Citrus Sinensis ID: 027471

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAMM
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccEEEEEcccccEEEEEEcccccccccHHHHccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHcccEEEEEEcccccEEEEEEEcccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEHEEcHcccHHHHHHHHcccEEEEEEEcccccccccEEEccccEEEEcccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccEEEEEEEcccccEEEEEEEEEEcccccccccEEEc
Coil and Loop (DISEMBL)
mhkvpvdkskrgsrwplqwplrlekppywlnseagvygkaapedftadyQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNvvpiespdtlpiiyERGLFGLYHDwcesfntyprtydLLHADHLFSTIKKRCSLKAVVAEVDRilrpdgnlilrddaETIVEVEDLVKSLHWDVRMIYtndnqgmlcvhktywrpkeTETILSAMM
Flexible Loop (DISEMBL)
mhkvpvdkskrgsrwplqwplrlekppyWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEvdrilrpdgnlilrddaetIVEVEDLVKSLHWDVRMIYtndnqgmlcvHKTYWRPKETETILSAMM
Low Complexity Region (SEG)
MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAMM
Disordered region (IsUnstruct)
**************WPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRP***********
Disordered Region (DISOPRED)
*HKVP***************LRLEKPPYWLNSE****GKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWR**********M*
Disordered Region (DISEMBL)
************SRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAMM
Disordered Region (DISPRO)
*************RWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETET******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAMM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q8L7V3	829	Probable methyltransferas	yes	no	0.995	0.267	0.721	1e-99
Q6NPR7	770	Probable methyltransferas	no	no	0.995	0.288	0.720	3e-97
Q0WT31	770	Probable methyltransferas	no	no	0.995	0.288	0.711	7e-97
Q9SD39	895	Probable methyltransferas	no	no	0.968	0.241	0.672	9e-91
Q9LN50	724	Probable methyltransferas	no	no	0.910	0.280	0.535	9e-67
Q9SIZ3	589	Probable methyltransferas	no	no	0.852	0.322	0.487	2e-50
Q9LYN3	610	Probable methyltransferas	no	no	0.852	0.311	0.477	9e-48
Q9FG39	682	Probable methyltransferas	no	no	0.780	0.255	0.468	1e-42
B9DFI7	616	Probable methyltransferas	no	no	0.874	0.316	0.427	2e-41
O22285	694	Probable methyltransferas	no	no	0.834	0.268	0.436	2e-41

>sp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1

 Score =  362 bits (929), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 161/223 (72%), Positives = 196/223 (87%), Gaps = 1/223 (0%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNS-EAGVYGKAAPEDFTADYQHWKNVVSKS 59
           MH  P DK++RGS+WP QWP RLEK P+WL+S + GVYGKAAPEDF+ADY+HWK VV+KS
Sbjct: 606 MHTAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTKS 665

Query: 60  YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
           YLNG+GINW+ VRNVMDMRAVYGGFAAAL+DLKVWVMNVVPI+SPDTL IIYERGLFG+Y
Sbjct: 666 YLNGLGINWASVRNVMDMRAVYGGFAAALRDLKVWVMNVVPIDSPDTLAIIYERGLFGIY 725

Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVE 179
           HDWCESF+TYPR+YDLLHADHLFS +K+RC+L AV+AEVDR+LRP+G LI+RDDAETI +
Sbjct: 726 HDWCESFSTYPRSYDLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAETIQQ 785

Query: 180 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 222
           VE +VK++ W+VRM Y+ + +G+L V K+ WRP E ET+  A+
Sbjct: 786 VEGMVKAMKWEVRMTYSKEKEGLLSVQKSIWRPSEVETLTYAI 828

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q6NPR7|PMTO_ARATH Probable methyltransferase PMT24 OS=Arabidopsis thaliana GN=At1g29470 PE=1 SV=1

 Score =  354 bits (908), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 160/222 (72%), Positives = 190/222 (85%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
           +HKV  D SKRG+ WP  WP R+E  P WL+S+ GVYGK A EDFTAD++ WK +VSKSY
Sbjct: 548 IHKVTEDSSKRGAVWPESWPERVETVPQWLDSQEGVYGKPAQEDFTADHERWKTIVSKSY 607

Query: 61  LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
           LNGMGI+WS+VRNVMDMRAVYGGFAAALKDLK+WVMNVVPI+SPDTLPIIYERGLFG+YH
Sbjct: 608 LNGMGIDWSYVRNVMDMRAVYGGFAAALKDLKLWVMNVVPIDSPDTLPIIYERGLFGIYH 667

Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEV 180
           DWCESF+TYPRTYDLLHADHLFS++KKRC+L  V+AEVDRILRP G  I+RDD ETI E+
Sbjct: 668 DWCESFSTYPRTYDLLHADHLFSSLKKRCNLVGVMAEVDRILRPQGTFIVRDDMETIGEI 727

Query: 181 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 222
           E +VKS+ W+VRM ++ D +G+L V K++WRP E ETI SA+
Sbjct: 728 EKMVKSMKWNVRMTHSKDGEGLLSVQKSWWRPTEAETIQSAI 769

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana GN=At2g34300 PE=1 SV=2

 Score =  353 bits (905), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 158/222 (71%), Positives = 190/222 (85%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
           MHKV  D SKRG+ WP  WP R+E  P WL+S+ GVYGK APEDFTAD + WK +VSK+Y
Sbjct: 548 MHKVTEDSSKRGAVWPNMWPERVETAPEWLDSQEGVYGKPAPEDFTADQEKWKTIVSKAY 607

Query: 61  LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
           LN MGI+WS VRNVMDMRAVYGGFAAALKDLK+WVMNVVP+++PDTLPIIYERGLFG+YH
Sbjct: 608 LNDMGIDWSNVRNVMDMRAVYGGFAAALKDLKLWVMNVVPVDAPDTLPIIYERGLFGIYH 667

Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEV 180
           DWCESFNTYPRTYDLLHADHLFST++KRC+L +V+AE+DRILRP G  I+RDD ET+ EV
Sbjct: 668 DWCESFNTYPRTYDLLHADHLFSTLRKRCNLVSVMAEIDRILRPQGTFIIRDDMETLGEV 727

Query: 181 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 222
           E +VKS+ W V+M  + DN+G+L + K++WRP+ETETI SA+
Sbjct: 728 EKMVKSMKWKVKMTQSKDNEGLLSIEKSWWRPEETETIKSAI 769

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1

 Score =  332 bits (852), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 146/217 (67%), Positives = 182/217 (83%), Gaps = 1/217 (0%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNS-EAGVYGKAAPEDFTADYQHWKNVVSKS 59
           MHKVP +  +RGS+WP+ WP RL+ PPYWLNS + G+YGK AP DFT DY+HWK+VVSK 
Sbjct: 679 MHKVPTNVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRDFTTDYEHWKHVVSKV 738

Query: 60  YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
           Y+N +GI+WS VRNVMDMRAVYGGFAAALKDL+VWVMNVV I SPDTLPIIYERGLFG+Y
Sbjct: 739 YMNEIGISWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNINSPDTLPIIYERGLFGIY 798

Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVE 179
           HDWCESF+TYPR+YDLLHADHLFS ++ RC+L  V+AEVDRI+RP G LI+RD++  I E
Sbjct: 799 HDWCESFSTYPRSYDLLHADHLFSKLRTRCNLVPVMAEVDRIVRPGGKLIVRDESNVIRE 858

Query: 180 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETE 216
           VE+++KSLHWDV + ++   +G+L   K +WRP+ ++
Sbjct: 859 VENMLKSLHWDVHLTFSKHQEGILSAQKGFWRPETSQ 895

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LN50|PMTS_ARATH Probable methyltransferase PMT28 OS=Arabidopsis thaliana GN=At1g19430 PE=1 SV=1

 Score =  253 bits (645), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 114/213 (53%), Positives = 148/213 (69%), Gaps = 10/213 (4%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
           ++++P    + G+ WP +WP RLE  P WL S+         E    D  HW  +V+KSY
Sbjct: 521 IYEIPSAIEQHGAEWPEEWPKRLETYPEWLTSK---------EKAMEDTNHWNAMVNKSY 571

Query: 61  LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
           L G+GI+W  +RNVMDM A+YGGF A+L    VWVMNVVP+ SPDTLP IYERGL G+YH
Sbjct: 572 LTGLGIDWLHIRNVMDMTAIYGGFGASLVKQNVWVMNVVPVHSPDTLPFIYERGLLGIYH 631

Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKKRCSLKA-VVAEVDRILRPDGNLILRDDAETIVE 179
           DWCE F TYPR+YDLLHADHLFS +K RC   A +V E+DR+ RP G +++RD  E +  
Sbjct: 632 DWCEPFGTYPRSYDLLHADHLFSRLKNRCKQPASIVVEMDRLTRPGGWVVVRDKVEILEP 691

Query: 180 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRP 212
           +E++++SLHW++RM Y  D +GMLC  KT WRP
Sbjct: 692 LEEILRSLHWEIRMTYAQDKEGMLCAQKTLWRP 724

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SIZ3|PMTN_ARATH Probable methyltransferase PMT23 OS=Arabidopsis thaliana GN=At2g40280 PE=1 SV=2

 Score =  199 bits (505), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 133/203 (65%), Gaps = 13/203 (6%)

Query: 15  WPLQWPLRL-EKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRN 73
           WP  WP RL    P  ++ +A        E    D + W   VS  YL  + +NWS VRN
Sbjct: 397 WPELWPKRLVSVKPQSISVKA--------ETLKKDTEKWSASVSDVYLKHLAVNWSTVRN 448

Query: 74  VMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTY 133
           VMDM A +GGFAAAL +L +WVMNVVP++ PDTL ++Y+RGL G+YHDWCES NTYPRTY
Sbjct: 449 VMDMNAGFGGFAAALINLPLWVMNVVPVDKPDTLSVVYDRGLIGVYHDWCESVNTYPRTY 508

Query: 134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM 193
           DLLH+  L   + +RC +  VVAE+DRI+RP G L+++D+ ETI+++E ++ SLHW  + 
Sbjct: 509 DLLHSSFLLGDLTQRCEIVQVVAEIDRIVRPGGYLVVQDNMETIMKLESILGSLHWSTK- 567

Query: 194 IYTNDNQGMLCVHKTYWRPKETE 216
           IY +     L   K +WRP + E
Sbjct: 568 IYEDR---FLVGRKGFWRPAKPE 587

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LYN3|PMTM_ARATH Probable methyltransferase PMT22 OS=Arabidopsis thaliana GN=At3g56080 PE=3 SV=1

 Score =  189 bits (481), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 127/201 (63%), Gaps = 11/201 (5%)

Query: 13  SRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVR 72
            +WP  WP RL + P  L  E     + + E F  D + W  V+S  YL  + INW+ + 
Sbjct: 420 GKWPSGWPERLTETPVSLFRE-----QRSEESFREDSKLWSGVMSNIYLYSLAINWTRIH 474

Query: 73  NVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRT 132
           NVMDM A YGGFAAAL +  +WVMNV+P+E  DTL  I++RGL G+YHDWCESFNTYPR+
Sbjct: 475 NVMDMNAGYGGFAAALINKPLWVMNVIPVEGEDTLSTIFDRGLIGIYHDWCESFNTYPRS 534

Query: 133 YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 192
           YDLLH+  LF+ + +RC L  VV E+DRILRP G L ++D  E + ++  ++ SL W   
Sbjct: 535 YDLLHSSFLFTNLSQRCDLMEVVVEIDRILRPGGYLAVQDTVEMLKKLNPILLSLRWS-- 592

Query: 193 MIYTNDNQGMLCVH-KTYWRP 212
              TN  +G   V  K+ WRP
Sbjct: 593 ---TNLYRGKFLVGLKSSWRP 610

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 119/177 (67%), Gaps = 3/177 (1%)

Query: 19  WPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMR 78
           WP RL  PP  L +       A  E F A+ ++WK ++S +Y+N +      +RNV+DMR
Sbjct: 468 WPARLLTPPDRLQTIQIDSYIARKELFVAESKYWKEIIS-NYVNALHWKQIGLRNVLDMR 526

Query: 79  AVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLL 136
           A +GGFAAAL +LKV  WV+NV+P+  P+TLP+IY+RGL G+ HDWCE F+TYPRTYDLL
Sbjct: 527 AGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLL 586

Query: 137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM 193
           HA  LFS  +KRC++  ++ E+DRILRP G + +RD      E++++  ++ W   +
Sbjct: 587 HAAGLFSIERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSL 643

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 132/206 (64%), Gaps = 11/206 (5%)

Query: 19  WPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY--LNGMGINWSFVRNVMD 76
           +P RL   P  ++S  G       + +  D + WK  V K+Y  +N + ++    RN+MD
Sbjct: 414 FPDRLNAVPPRISS--GSISGVTVDAYEDDNRQWKKHV-KAYKRINSL-LDTGRYRNIMD 469

Query: 77  MRAVYGGFAAALKDLKVWVMNVVP-IESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDL 135
           M A +GGFAAAL+  K+WVMNVVP I   + L ++YERGL G+YHDWCE+F+TYPRTYDL
Sbjct: 470 MNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDL 529

Query: 136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY 195
           +HA+HLFS  K +C+   ++ E+DRILRP+G +I+RDD +T+++V+ ++  + WD +++ 
Sbjct: 530 IHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVD 589

Query: 196 TNDN----QGMLCVHKTYWRPKETET 217
             D     + +L   K YW    T T
Sbjct: 590 HEDGPLVPEKVLIAVKQYWVTNSTST 615

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/190 (43%), Positives = 119/190 (62%), Gaps = 4/190 (2%)

Query: 12  GSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFV 71
           G   PL WP RL  PP  L +       A  E F A+ ++W  ++   Y+  +      +
Sbjct: 490 GGNVPL-WPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIG-GYVRALKWKKMKL 547

Query: 72  RNVMDMRAVYGGFAAALKD--LKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY 129
           RNV+DMRA +GGFAAAL D  L  WV++VVP+  P+TLP+IY+RGL G+ HDWCE F+TY
Sbjct: 548 RNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTY 607

Query: 130 PRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW 189
           PRTYD LHA  LFS  +KRC +  ++ E+DRILRP G   +RD  + + E++++ K++ W
Sbjct: 608 PRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGW 667

Query: 190 DVRMIYTNDN 199
              +  T++ 
Sbjct: 668 HTSLRDTSEG 677

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
224085019	381	predicted protein [Populus trichocarpa]	1.0	0.585	0.816	1e-107
118485999	817	unknown [Populus trichocarpa]	1.0	0.272	0.784	1e-106
255558498	802	ATP binding protein, putative [Ricinus c	1.0	0.278	0.784	1e-106
224062976	421	predicted protein [Populus trichocarpa]	1.0	0.529	0.784	1e-104
359492139	844	PREDICTED: probable methyltransferase PM	0.995	0.263	0.748	1e-100
356509359	802	PREDICTED: probable methyltransferase PM	0.995	0.276	0.718	3e-99
356518587	835	PREDICTED: probable methyltransferase PM	0.995	0.265	0.723	5e-99
297793997	821	hypothetical protein ARALYDRAFT_496597 [	0.995	0.270	0.726	9e-99
225431685	825	PREDICTED: probable methyltransferase PM	0.995	0.269	0.721	2e-98
296088518	761	unnamed protein product [Vitis vinifera]	0.995	0.291	0.721	2e-98

>gi|224085019|ref|XP_002307464.1| predicted protein [Populus trichocarpa] gi|222856913|gb|EEE94460.1| predicted protein [Populus trichocarpa]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/223 (81%), Positives = 201/223 (90%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
           MHKVP D S RGSRWP QWP RLEKPPYWLNS+ GVYGKAAPEDF ADY HWKNVVSKSY
Sbjct: 159 MHKVPEDASVRGSRWPEQWPQRLEKPPYWLNSQVGVYGKAAPEDFAADYGHWKNVVSKSY 218

Query: 61  LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
           LNGMGINWS VRN+MDMRAVYGGFAAALKDLKVWVMNVVPI+S DTLPIIYERGLFG+YH
Sbjct: 219 LNGMGINWSSVRNIMDMRAVYGGFAAALKDLKVWVMNVVPIDSADTLPIIYERGLFGMYH 278

Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEV 180
           DWCESFNTYPRTYDLLHADHLFS++ KRC+L AV+AEVDRILRP+GNLI+RD+ E I E+
Sbjct: 279 DWCESFNTYPRTYDLLHADHLFSSLTKRCNLVAVIAEVDRILRPEGNLIVRDNVEIIGEI 338

Query: 181 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAMM 223
           E L KSL+WD+RMIY+ DN+G+LCVHKT WRP E ETI SA++
Sbjct: 339 ESLAKSLNWDIRMIYSKDNEGLLCVHKTMWRPTEPETITSAII 381

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485999|gb|ABK94843.1| unknown [Populus trichocarpa]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 175/223 (78%), Positives = 200/223 (89%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
           MHKVPVD S RGS WP QWP RLEKPPYWLNS+ GVYGKAA EDF ADY+HWKNVVS+SY
Sbjct: 593 MHKVPVDASVRGSHWPEQWPKRLEKPPYWLNSQVGVYGKAAAEDFAADYKHWKNVVSQSY 652

Query: 61  LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
           LNG+GINWS VRN+MDMRAVYGGFAAALKDLKVWVMN+VPI+S DTLP+IYERGLFG+YH
Sbjct: 653 LNGIGINWSSVRNIMDMRAVYGGFAAALKDLKVWVMNIVPIDSADTLPMIYERGLFGMYH 712

Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEV 180
           DWCESFNTYPRTYDLLHADHLFS++KKRC+L AV+AEVDRILRP+G LI+RD+ E I E+
Sbjct: 713 DWCESFNTYPRTYDLLHADHLFSSLKKRCNLVAVIAEVDRILRPEGKLIVRDNVEIIGEI 772

Query: 181 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAMM 223
           E L KSL W++RMIY+ DN+G+LCV KT WRP E+ETI SA++
Sbjct: 773 ESLAKSLKWEIRMIYSKDNEGLLCVQKTTWRPTESETITSAII 815

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558498|ref|XP_002520274.1| ATP binding protein, putative [Ricinus communis] gi|223540493|gb|EEF42060.1| ATP binding protein, putative [Ricinus communis]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 175/223 (78%), Positives = 198/223 (88%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
           MHKVP D S+RGS+WP QWP RLE PPYWL S+ GVYGKAAPEDFTADY HWK+VVS+SY
Sbjct: 580 MHKVPEDSSERGSQWPEQWPQRLETPPYWLKSQVGVYGKAAPEDFTADYNHWKHVVSQSY 639

Query: 61  LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
           LNGMGI+WS VRN MDMRAVYGGFAAALKDLKVWVMN VPI+SPDTLPIIYERGLFG+YH
Sbjct: 640 LNGMGIDWSTVRNAMDMRAVYGGFAAALKDLKVWVMNTVPIDSPDTLPIIYERGLFGMYH 699

Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEV 180
           DWCESFNTYPRTYDLLHADHLFS++KKRC+L AVVAEVDRILRP+G LI+RD+ + I E+
Sbjct: 700 DWCESFNTYPRTYDLLHADHLFSSLKKRCNLVAVVAEVDRILRPEGKLIVRDNVDIIGEI 759

Query: 181 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAMM 223
           E + KSL W++RMIYT D++G+LCV KT WRP E ETI SA+M
Sbjct: 760 ESMAKSLKWEIRMIYTKDDEGLLCVRKTMWRPTEAETIKSAIM 802

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062976|ref|XP_002300957.1| predicted protein [Populus trichocarpa] gi|222842683|gb|EEE80230.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 175/223 (78%), Positives = 200/223 (89%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
           MHKVPVD S RGS WP QWP RLEKPPYWLNS+ GVYGKAA EDF ADY+HWKNVVS+SY
Sbjct: 197 MHKVPVDASVRGSHWPEQWPKRLEKPPYWLNSQVGVYGKAAAEDFAADYKHWKNVVSQSY 256

Query: 61  LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
           LNG+GINWS VRN+MDMRAVYGGFAAALKDLKVWVMN+VPI+S DTLP+IYERGLFG+YH
Sbjct: 257 LNGIGINWSSVRNIMDMRAVYGGFAAALKDLKVWVMNIVPIDSADTLPMIYERGLFGMYH 316

Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEV 180
           DWCESFNTYPRTYDLLHADHLFS++KKRC+L AV+AEVDRILRP+G LI+RD+ E I E+
Sbjct: 317 DWCESFNTYPRTYDLLHADHLFSSLKKRCNLVAVIAEVDRILRPEGKLIVRDNVEIIGEI 376

Query: 181 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAMM 223
           E L KSL W++RMIY+ DN+G+LCV KT WRP E+ETI SA++
Sbjct: 377 ESLAKSLKWEIRMIYSKDNEGLLCVQKTTWRPTESETITSAII 419

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492139|ref|XP_002285889.2| PREDICTED: probable methyltransferase PMT26-like [Vitis vinifera]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 167/223 (74%), Positives = 195/223 (87%), Gaps = 1/223 (0%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWL-NSEAGVYGKAAPEDFTADYQHWKNVVSKS 59
           MHKVPV  S+RGS+WP QWPLR+EK P WL +S+ GVYGKAAPEDFT+DY+HWK VVS S
Sbjct: 621 MHKVPVLTSERGSQWPEQWPLRVEKAPNWLKSSQVGVYGKAAPEDFTSDYEHWKTVVSSS 680

Query: 60  YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
           YL GMGI WS VRNVMDM+AVYGGFAAALKDLKVWVMNVVPI SPDTLPII+ERGLFG+Y
Sbjct: 681 YLKGMGIKWSSVRNVMDMKAVYGGFAAALKDLKVWVMNVVPINSPDTLPIIFERGLFGIY 740

Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVE 179
           HDWCESF+TYPR+YDL+HADHLFS +KKRC L AV+AEVDRILRP+G LI+RD+ ET+ E
Sbjct: 741 HDWCESFSTYPRSYDLVHADHLFSDLKKRCQLTAVIAEVDRILRPEGMLIVRDNVETVSE 800

Query: 180 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 222
           VE + KSL W+VR+ Y+ D +G+LCV KT+WRP ET+TI SA+
Sbjct: 801 VESMAKSLQWEVRLTYSKDKEGLLCVKKTFWRPTETQTIKSAI 843

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509359|ref|XP_003523417.1| PREDICTED: probable methyltransferase PMT25-like [Glycine max]

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 161/224 (71%), Positives = 198/224 (88%), Gaps = 2/224 (0%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
           MHKVPVD S+RGS WP QWPLRLEKPPYW++S+AGVYG+AA  +FTADY+HWKNV+S SY
Sbjct: 578 MHKVPVDASERGSIWPEQWPLRLEKPPYWIDSQAGVYGRAASVEFTADYKHWKNVISHSY 637

Query: 61  LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYERGLFGL 118
           LNGMGINWS VRNVMDM+AVYGGFAAAL+ LKV  WVMNVVPI+SPDTLPIIYERGLFG+
Sbjct: 638 LNGMGINWSSVRNVMDMKAVYGGFAAALRALKVNVWVMNVVPIDSPDTLPIIYERGLFGI 697

Query: 119 YHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIV 178
           YHDWCES NTYPR+YDLLHAD +FST+K++C++ AV+AEVDRILRP+G L++RD+ ETI 
Sbjct: 698 YHDWCESLNTYPRSYDLLHADSIFSTLKEKCNILAVIAEVDRILRPEGYLVIRDNVETIG 757

Query: 179 EVEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 222
           E+E + KSLHWD+++ Y+ + +G LC+ KT+WRP + ET+ SA+
Sbjct: 758 EIESMAKSLHWDIQLTYSKNGEGFLCIQKTFWRPTKVETVASAI 801

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518587|ref|XP_003527960.1| PREDICTED: probable methyltransferase PMT26-like [Glycine max]

 Score =  366 bits (939), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 162/224 (72%), Positives = 197/224 (87%), Gaps = 2/224 (0%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
           MHKVPVD S+RGS WP QWPLRLEKPPYW++S+AGVYG+AA  +FTADY+HWKNV+S  Y
Sbjct: 611 MHKVPVDASERGSIWPEQWPLRLEKPPYWIDSQAGVYGRAASVEFTADYKHWKNVISHLY 670

Query: 61  LNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGL 118
           LNGMGINWS VRNVMDM+AVYGGFAAAL+ LK  VWVMNVVPI+SPDTLPIIYERGLFG+
Sbjct: 671 LNGMGINWSSVRNVMDMKAVYGGFAAALRALKLNVWVMNVVPIDSPDTLPIIYERGLFGI 730

Query: 119 YHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIV 178
           YHDWCESFNTYPR+YDLLHAD +FST+K++C+  AV+AEVDRILRP+G L++RD+ ETI 
Sbjct: 731 YHDWCESFNTYPRSYDLLHADSIFSTLKEKCNKVAVIAEVDRILRPEGYLVIRDNVETIG 790

Query: 179 EVEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 222
           E+E L KSL WD+R+ Y+ + +G+LC+ KT+WRP + ET+ SA+
Sbjct: 791 EIESLAKSLQWDIRLTYSKNGEGLLCIQKTFWRPTKVETVASAI 834

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793997|ref|XP_002864883.1| hypothetical protein ARALYDRAFT_496597 [Arabidopsis lyrata subsp. lyrata] gi|297310718|gb|EFH41142.1| hypothetical protein ARALYDRAFT_496597 [Arabidopsis lyrata subsp. lyrata]

 Score =  365 bits (936), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 162/223 (72%), Positives = 197/223 (88%), Gaps = 1/223 (0%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNS-EAGVYGKAAPEDFTADYQHWKNVVSKS 59
           MH  P DK++RGS+WP QWP RLEKPP+WL+S + GVYGKAAPEDF+ADY+HWK VVSKS
Sbjct: 598 MHTAPEDKTQRGSQWPEQWPARLEKPPFWLSSSQTGVYGKAAPEDFSADYEHWKRVVSKS 657

Query: 60  YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
           YL G+GINW+ VRNVMDMRAVYGGFAAAL++LKVWVMNVVPI+SPDTL IIYERGLFG+Y
Sbjct: 658 YLKGLGINWASVRNVMDMRAVYGGFAAALRELKVWVMNVVPIDSPDTLAIIYERGLFGIY 717

Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVE 179
           HDWCESF+TYPR+YDLLHADHLFS +K+RC+L AV+AEVDR+LRP+G LI+RDDAETI E
Sbjct: 718 HDWCESFSTYPRSYDLLHADHLFSRLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAETIQE 777

Query: 180 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 222
           VE +VK++ W+VRM Y+ + +G+L V K++WRP E ET+  A+
Sbjct: 778 VEAMVKAMKWEVRMTYSREKEGLLSVQKSFWRPNEVETLTYAI 820

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431685|ref|XP_002266357.1| PREDICTED: probable methyltransferase PMT26-like [Vitis vinifera]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 161/223 (72%), Positives = 196/223 (87%), Gaps = 1/223 (0%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWL-NSEAGVYGKAAPEDFTADYQHWKNVVSKS 59
           MHKVPVD SKRGS+WP  WP RL+K PYWL +S+ GVYG+AAPEDFTADY+HWK VV++S
Sbjct: 602 MHKVPVDASKRGSQWPELWPARLDKSPYWLTSSQVGVYGRAAPEDFTADYEHWKRVVAQS 661

Query: 60  YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
           YLNG+GI+WS VRNVMDMRAVYGGFAAAL+DL VWVMNVV I+SPDTLPIIYERGLFG+Y
Sbjct: 662 YLNGIGISWSSVRNVMDMRAVYGGFAAALRDLNVWVMNVVSIDSPDTLPIIYERGLFGIY 721

Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVE 179
           H+WCESFNTYPR+YDLLHADH+FS  KK+C+L AV+AE DRILRP+G LI+RDD ET+ +
Sbjct: 722 HNWCESFNTYPRSYDLLHADHIFSKTKKKCNLVAVIAEADRILRPEGKLIVRDDVETLGQ 781

Query: 180 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 222
           VE++++S+HW++RM Y+ + +G+LC  KT WRPKE E I SA+
Sbjct: 782 VENMLRSMHWEIRMTYSKEKEGLLCAQKTMWRPKEMEIIKSAI 824

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088518|emb|CBI37509.3| unnamed protein product [Vitis vinifera]

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 161/223 (72%), Positives = 196/223 (87%), Gaps = 1/223 (0%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWL-NSEAGVYGKAAPEDFTADYQHWKNVVSKS 59
           MHKVPVD SKRGS+WP  WP RL+K PYWL +S+ GVYG+AAPEDFTADY+HWK VV++S
Sbjct: 538 MHKVPVDASKRGSQWPELWPARLDKSPYWLTSSQVGVYGRAAPEDFTADYEHWKRVVAQS 597

Query: 60  YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
           YLNG+GI+WS VRNVMDMRAVYGGFAAAL+DL VWVMNVV I+SPDTLPIIYERGLFG+Y
Sbjct: 598 YLNGIGISWSSVRNVMDMRAVYGGFAAALRDLNVWVMNVVSIDSPDTLPIIYERGLFGIY 657

Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVE 179
           H+WCESFNTYPR+YDLLHADH+FS  KK+C+L AV+AE DRILRP+G LI+RDD ET+ +
Sbjct: 658 HNWCESFNTYPRSYDLLHADHIFSKTKKKCNLVAVIAEADRILRPEGKLIVRDDVETLGQ 717

Query: 180 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 222
           VE++++S+HW++RM Y+ + +G+LC  KT WRPKE E I SA+
Sbjct: 718 VENMLRSMHWEIRMTYSKEKEGLLCAQKTMWRPKEMEIIKSAI 760

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2160806	829	AT5G64030 [Arabidopsis thalian	0.995	0.267	0.721	1.1e-92
TAIR|locus:2013628	770	AT1G29470 [Arabidopsis thalian	0.995	0.288	0.720	2.5e-90
TAIR|locus:2040864	770	AT2G34300 [Arabidopsis thalian	0.995	0.288	0.711	4e-90
TAIR|locus:2080823	895	AT3G51070 [Arabidopsis thalian	0.968	0.241	0.672	2.7e-84
TAIR|locus:2016392	724	AT1G19430 [Arabidopsis thalian	0.910	0.280	0.535	7.6e-64
TAIR|locus:2063078	589	AT2G40280 [Arabidopsis thalian	0.852	0.322	0.492	3.2e-49
TAIR|locus:2153704	682	AT5G06050 [Arabidopsis thalian	0.748	0.244	0.482	2.6e-43
TAIR|locus:2202805	616	AT1G26850 [Arabidopsis thalian	0.874	0.316	0.427	2.5e-42
TAIR|locus:2063947	694	AT2G39750 [Arabidopsis thalian	0.829	0.266	0.439	1.8e-40
TAIR|locus:2195955	655	AT1G77260 [Arabidopsis thalian	0.748	0.254	0.471	5.9e-40

TAIR|locus:2160806 AT5G64030 [Arabidopsis thaliana (taxid:3702)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 161/223 (72%), Positives = 196/223 (87%)

Query:     1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNS-EAGVYGKAAPEDFTADYQHWKNVVSKS 59
             MH  P DK++RGS+WP QWP RLEK P+WL+S + GVYGKAAPEDF+ADY+HWK VV+KS
Sbjct:   606 MHTAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTKS 665

Query:    60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
             YLNG+GINW+ VRNVMDMRAVYGGFAAAL+DLKVWVMNVVPI+SPDTL IIYERGLFG+Y
Sbjct:   666 YLNGLGINWASVRNVMDMRAVYGGFAAALRDLKVWVMNVVPIDSPDTLAIIYERGLFGIY 725

Query:   120 HDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVE 179
             HDWCESF+TYPR+YDLLHADHLFS +K+RC+L AV+AEVDR+LRP+G LI+RDDAETI +
Sbjct:   726 HDWCESFSTYPRSYDLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAETIQQ 785

Query:   180 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 222
             VE +VK++ W+VRM Y+ + +G+L V K+ WRP E ET+  A+
Sbjct:   786 VEGMVKAMKWEVRMTYSKEKEGLLSVQKSIWRPSEVETLTYAI 828

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2013628 AT1G29470 [Arabidopsis thaliana (taxid:3702)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 160/222 (72%), Positives = 190/222 (85%)

Query:     1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
             +HKV  D SKRG+ WP  WP R+E  P WL+S+ GVYGK A EDFTAD++ WK +VSKSY
Sbjct:   548 IHKVTEDSSKRGAVWPESWPERVETVPQWLDSQEGVYGKPAQEDFTADHERWKTIVSKSY 607

Query:    61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
             LNGMGI+WS+VRNVMDMRAVYGGFAAALKDLK+WVMNVVPI+SPDTLPIIYERGLFG+YH
Sbjct:   608 LNGMGIDWSYVRNVMDMRAVYGGFAAALKDLKLWVMNVVPIDSPDTLPIIYERGLFGIYH 667

Query:   121 DWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEV 180
             DWCESF+TYPRTYDLLHADHLFS++KKRC+L  V+AEVDRILRP G  I+RDD ETI E+
Sbjct:   668 DWCESFSTYPRTYDLLHADHLFSSLKKRCNLVGVMAEVDRILRPQGTFIVRDDMETIGEI 727

Query:   181 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 222
             E +VKS+ W+VRM ++ D +G+L V K++WRP E ETI SA+
Sbjct:   728 EKMVKSMKWNVRMTHSKDGEGLLSVQKSWWRPTEAETIQSAI 769

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2040864 AT2G34300 [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 158/222 (71%), Positives = 190/222 (85%)

Query:     1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
             MHKV  D SKRG+ WP  WP R+E  P WL+S+ GVYGK APEDFTAD + WK +VSK+Y
Sbjct:   548 MHKVTEDSSKRGAVWPNMWPERVETAPEWLDSQEGVYGKPAPEDFTADQEKWKTIVSKAY 607

Query:    61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
             LN MGI+WS VRNVMDMRAVYGGFAAALKDLK+WVMNVVP+++PDTLPIIYERGLFG+YH
Sbjct:   608 LNDMGIDWSNVRNVMDMRAVYGGFAAALKDLKLWVMNVVPVDAPDTLPIIYERGLFGIYH 667

Query:   121 DWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEV 180
             DWCESFNTYPRTYDLLHADHLFST++KRC+L +V+AE+DRILRP G  I+RDD ET+ EV
Sbjct:   668 DWCESFNTYPRTYDLLHADHLFSTLRKRCNLVSVMAEIDRILRPQGTFIIRDDMETLGEV 727

Query:   181 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 222
             E +VKS+ W V+M  + DN+G+L + K++WRP+ETETI SA+
Sbjct:   728 EKMVKSMKWKVKMTQSKDNEGLLSIEKSWWRPEETETIKSAI 769

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2080823 AT3G51070 [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
 Identities = 146/217 (67%), Positives = 182/217 (83%)

Query:     1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNS-EAGVYGKAAPEDFTADYQHWKNVVSKS 59
             MHKVP +  +RGS+WP+ WP RL+ PPYWLNS + G+YGK AP DFT DY+HWK+VVSK 
Sbjct:   679 MHKVPTNVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRDFTTDYEHWKHVVSKV 738

Query:    60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
             Y+N +GI+WS VRNVMDMRAVYGGFAAALKDL+VWVMNVV I SPDTLPIIYERGLFG+Y
Sbjct:   739 YMNEIGISWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNINSPDTLPIIYERGLFGIY 798

Query:   120 HDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVE 179
             HDWCESF+TYPR+YDLLHADHLFS ++ RC+L  V+AEVDRI+RP G LI+RD++  I E
Sbjct:   799 HDWCESFSTYPRSYDLLHADHLFSKLRTRCNLVPVMAEVDRIVRPGGKLIVRDESNVIRE 858

Query:   180 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETE 216
             VE+++KSLHWDV + ++   +G+L   K +WRP+ ++
Sbjct:   859 VENMLKSLHWDVHLTFSKHQEGILSAQKGFWRPETSQ 895

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2016392 AT1G19430 [Arabidopsis thaliana (taxid:3702)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 114/213 (53%), Positives = 148/213 (69%)

Query:     1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
             ++++P    + G+ WP +WP RLE  P WL S+         E    D  HW  +V+KSY
Sbjct:   521 IYEIPSAIEQHGAEWPEEWPKRLETYPEWLTSK---------EKAMEDTNHWNAMVNKSY 571

Query:    61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
             L G+GI+W  +RNVMDM A+YGGF A+L    VWVMNVVP+ SPDTLP IYERGL G+YH
Sbjct:   572 LTGLGIDWLHIRNVMDMTAIYGGFGASLVKQNVWVMNVVPVHSPDTLPFIYERGLLGIYH 631

Query:   121 DWCESFNTYPRTYDLLHADHLFSTIKKRCSLKA-VVAEVDRILRPDGNLILRDDAETIVE 179
             DWCE F TYPR+YDLLHADHLFS +K RC   A +V E+DR+ RP G +++RD  E +  
Sbjct:   632 DWCEPFGTYPRSYDLLHADHLFSRLKNRCKQPASIVVEMDRLTRPGGWVVVRDKVEILEP 691

Query:   180 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRP 212
             +E++++SLHW++RM Y  D +GMLC  KT WRP
Sbjct:   692 LEEILRSLHWEIRMTYAQDKEGMLCAQKTLWRP 724

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2063078 AT2G40280 [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 100/203 (49%), Positives = 133/203 (65%)

Query:    15 WPLQWPLRLEK-PPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRN 73
             WP  WP RL    P  ++ +A        E    D + W   VS  YL  + +NWS VRN
Sbjct:   397 WPELWPKRLVSVKPQSISVKA--------ETLKKDTEKWSASVSDVYLKHLAVNWSTVRN 448

Query:    74 VMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTY 133
             VMDM A +GGFAAAL +L +WVMNVVP++ PDTL ++Y+RGL G+YHDWCES NTYPRTY
Sbjct:   449 VMDMNAGFGGFAAALINLPLWVMNVVPVDKPDTLSVVYDRGLIGVYHDWCESVNTYPRTY 508

Query:   134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM 193
             DLLH+  L   + +RC +  VVAE+DRI+RP G L+++D+ ETI+++E ++ SLHW  + 
Sbjct:   509 DLLHSSFLLGDLTQRCEIVQVVAEIDRIVRPGGYLVVQDNMETIMKLESILGSLHWSTK- 567

Query:   194 IYTNDNQGMLCVHKTYWRPKETE 216
             IY  D    L   K +WRP + E
Sbjct:   568 IY-EDR--FLVGRKGFWRPAKPE 587

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 2.6e-43, Sum P(2) = 2.6e-43
 Identities = 85/176 (48%), Positives = 122/176 (69%)

Query:    19 WPLRLEKPPYWLNS-EAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFV--RNVM 75
             WP RL  PP  L + +   Y  A  E F A+ ++WK ++S +Y+N +  +W  +  RNV+
Sbjct:   468 WPARLLTPPDRLQTIQIDSY-IARKELFVAESKYWKEIIS-NYVNAL--HWKQIGLRNVL 523

Query:    76 DMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTY 133
             DMRA +GGFAAAL +LKV  WV+NV+P+  P+TLP+IY+RGL G+ HDWCE F+TYPRTY
Sbjct:   524 DMRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTY 583

Query:   134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW 189
             DLLHA  LFS  +KRC++  ++ E+DRILRP G + +RD      E++++  ++ W
Sbjct:   584 DLLHAAGLFSIERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRW 639

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 88/206 (42%), Positives = 132/206 (64%)

Query:    19 WPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY--LNGMGINWSFVRNVMD 76
             +P RL   P  ++S  G       + +  D + WK  V K+Y  +N + ++    RN+MD
Sbjct:   414 FPDRLNAVPPRISS--GSISGVTVDAYEDDNRQWKKHV-KAYKRINSL-LDTGRYRNIMD 469

Query:    77 MRAVYGGFAAALKDLKVWVMNVVP-IESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDL 135
             M A +GGFAAAL+  K+WVMNVVP I   + L ++YERGL G+YHDWCE+F+TYPRTYDL
Sbjct:   470 MNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDL 529

Query:   136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY 195
             +HA+HLFS  K +C+   ++ E+DRILRP+G +I+RDD +T+++V+ ++  + WD +++ 
Sbjct:   530 IHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVD 589

Query:   196 TNDN----QGMLCVHKTYWRPKETET 217
               D     + +L   K YW    T T
Sbjct:   590 HEDGPLVPEKVLIAVKQYWVTNSTST 615

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 1.8e-40, P = 1.8e-40
 Identities = 83/189 (43%), Positives = 120/189 (63%)

Query:    12 GSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFV 71
             G   PL WP RL  PP  L +       A  E F A+ ++W  ++   Y+  +      +
Sbjct:   490 GGNVPL-WPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIG-GYVRALKWKKMKL 547

Query:    72 RNVMDMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY 129
             RNV+DMRA +GGFAAAL D K+  WV++VVP+  P+TLP+IY+RGL G+ HDWCE F+TY
Sbjct:   548 RNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTY 607

Query:   130 PRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW 189
             PRTYD LHA  LFS  +KRC +  ++ E+DRILRP G   +RD  + + E++++ K++ W
Sbjct:   608 PRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGW 667

Query:   190 DVRMIYTND 198
                +  T++
Sbjct:   668 HTSLRDTSE 676

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 5.9e-40, Sum P(2) = 5.9e-40
 Identities = 83/176 (47%), Positives = 116/176 (65%)

Query:    19 WPLRLEKPPYWLNS-EAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWS-F-VRNVM 75
             WP RL  PP  L S +   Y  +  E   A+ + W  VV +SY+      W  F +RNV+
Sbjct:   460 WPARLHDPPERLQSIQMDAY-ISRKEIMKAESRFWLEVV-ESYVRVF--RWKEFKLRNVL 515

Query:    76 DMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTY 133
             DMRA +GGFAAAL DL +  WVMN+VP+   +TLP+IY+RGL G  HDWCE F+TYPRTY
Sbjct:   516 DMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTY 575

Query:   134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW 189
             DL+HA  LFS  KKRC++  ++ E+DR+LRP G++ +RD    + +++ + K++ W
Sbjct:   576 DLIHAAFLFSVEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAIGW 631

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7V3	PMTQ_ARATH	2, ., 1, ., 1, ., -	0.7219	0.9955	0.2677	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0002019401 hypothetical protein (382 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
pfam03141	506	pfam03141, Methyltransf_29, Putative S-adenosyl-L-	1e-106

>gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score =  315 bits (810), Expect = e-106
 Identities = 111/222 (50%), Positives = 143/222 (64%), Gaps = 15/222 (6%)

Query: 1   MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
           +  +P    + G  W  +WP RL   P  L S  G  G  + E F AD + WK  VSK  
Sbjct: 297 ITPLPEVSHEVGGGWLEKWPERLTAVPPRLAS--GQIGGVSAEAFKADTELWKRRVSKYK 354

Query: 61  -LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
            L  + I+   VRNVMDM A +GGFAAAL D  VWVMNVVP++SPDTLP+IY+RGL G+Y
Sbjct: 355 RLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYDRGLIGIY 414

Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVE 179
           HDWCE F+TYPRTYDLLHADHLFS  KKRC+L+ ++ E+DRILRP G +I+RDD + + +
Sbjct: 415 HDWCEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRDDVDVLDK 474

Query: 180 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSA 221
           V+ + K++ W+VR+  T D             P + E IL A
Sbjct: 475 VKKIAKAMRWEVRITDTEDG------------PHDPEKILIA 504

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	100.0
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	100.0
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.37
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.14
PLN02244	340	tocopherol O-methyltransferase	99.14
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.09
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.07
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.05
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.04
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.03
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.0
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.99
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.98
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.97
PRK11207	197	tellurite resistance protein TehB; Provisional	98.96
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.96
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.96
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.91
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.9
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.85
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.85
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.84
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.82
PRK12335	287	tellurite resistance protein TehB; Provisional	98.82
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.79
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.77
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.77
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.77
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.76
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.76
PRK08317	241	hypothetical protein; Provisional	98.75
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.75
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.75
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.74
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.74
PLN02336	475	phosphoethanolamine N-methyltransferase	98.72
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.7
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.7
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.68
PRK05785	226	hypothetical protein; Provisional	98.67
TIGR00438	188	rrmJ cell division protein FtsJ.	98.67
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.65
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.63
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.62
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.6
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.58
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.58
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.56
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.56
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.55
PLN02336	475	phosphoethanolamine N-methyltransferase	98.53
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.51
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.5
PRK14967	223	putative methyltransferase; Provisional	98.5
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.47
PRK04266	226	fibrillarin; Provisional	98.47
PRK07402	196	precorrin-6B methylase; Provisional	98.47
PLN02490	340	MPBQ/MSBQ methyltransferase	98.47
PRK06922	677	hypothetical protein; Provisional	98.47
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.46
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.46
PTZ00146	293	fibrillarin; Provisional	98.45
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.43
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.43
PRK14968	188	putative methyltransferase; Provisional	98.42
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.41
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.39
PRK06202	232	hypothetical protein; Provisional	98.39
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.37
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.37
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.36
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.35
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.33
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.33
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.32
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.32
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.29
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.28
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.27
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.27
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.26
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.25
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.24
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.23
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.22
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.21
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.21
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.2
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.2
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.19
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.14
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.11
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.1
KOG3010	261	consensus Methyltransferase [General function pred	98.09
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.07
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.06
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.01
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.99
PRK04457	262	spermidine synthase; Provisional	97.95
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.95
COG2890	280	HemK Methylase of polypeptide chain release factor	97.94
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.85
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.85
TIGR03438	301	probable methyltransferase. This model represents	97.82
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.82
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.78
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.76
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.7
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.7
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.69
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.69
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	97.69
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	97.67
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.63
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.62
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.6
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.58
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.56
COG4123	248	Predicted O-methyltransferase [General function pr	97.51
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.49
KOG4300	252	consensus Predicted methyltransferase [General fun	97.44
PRK00811	283	spermidine synthase; Provisional	97.43
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.41
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.37
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.32
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.31
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.3
PLN03075	296	nicotianamine synthase; Provisional	97.25
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.22
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.21
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.13
KOG2361	264	consensus Predicted methyltransferase [General fun	97.08
KOG2904	328	consensus Predicted methyltransferase [General fun	97.03
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.02
PLN02476	278	O-methyltransferase	97.01
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	96.99
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.96
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.93
PRK01581	374	speE spermidine synthase; Validated	96.93
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	96.92
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	96.84
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	96.83
PLN02366	308	spermidine synthase	96.83
COG4122	219	Predicted O-methyltransferase [General function pr	96.79
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	96.73
KOG1271	227	consensus Methyltransferases [General function pre	96.68
PHA03411	279	putative methyltransferase; Provisional	96.64
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.6
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	96.59
PRK03612	521	spermidine synthase; Provisional	96.57
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	96.4
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	96.35
PHA03412	241	putative methyltransferase; Provisional	96.1
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	96.04
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	95.82
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	95.8
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	95.78
COG2521	287	Predicted archaeal methyltransferase [General func	95.71
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	95.7
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	95.57
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	95.49
PRK04148	134	hypothetical protein; Provisional	95.46
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	95.37
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	95.35
PRK13256	226	thiopurine S-methyltransferase; Reviewed	95.13
PLN02589	247	caffeoyl-CoA O-methyltransferase	94.88
PLN02672	1082	methionine S-methyltransferase	94.82
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	94.54
PRK00536	262	speE spermidine synthase; Provisional	94.46
KOG3115	249	consensus Methyltransferase-like protein [General	94.45
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	94.43
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	94.31
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	94.0
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	93.59
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	93.44
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	93.4
PLN02823	336	spermine synthase	93.05
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	92.82
KOG2940	325	consensus Predicted methyltransferase [General fun	92.44
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	92.08
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	91.5
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	91.47
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	91.4
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	91.03
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	90.83
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	90.75
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	90.6
PRK13699	227	putative methylase; Provisional	90.36
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	90.33
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	90.26
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	89.95
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	89.87
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	89.61
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	88.86
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	88.72
KOG2899	288	consensus Predicted methyltransferase [General fun	88.21
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	87.78
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	87.11
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	86.82
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	86.59
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	86.2
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	84.0
PF03269	177	DUF268: Caenorhabditis protein of unknown function	83.08
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	82.63
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	81.46
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	81.45
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	80.76

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=100.00  E-value=1.3e-75  Score=557.14  Aligned_cols=204  Identities=51%  Similarity=0.949  Sum_probs=193.9

Q ss_pred             CccCCCCCCCCCCcCCCCCCCCCCCCCcccccccCccCCCCccchhHhhhhHHHHHhhhhhhccC--CCCCCceEEEeeC
Q 027471            1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMG--INWSFVRNVMDMR   78 (223)
Q Consensus         1 ~~~~p~~~~~~g~~~p~~WP~rl~~~p~rl~~~~g~~~~~~~~~f~~D~~~W~~~v~~~Y~~~l~--i~~~~iRnvLDmg   78 (223)
                      ||++|++++..+.+++++||+||+++|+||++.  .+.+.++|.|++|+++|+++|++ |++.++  ++++++|||||||
T Consensus       297 it~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~--~~~g~~~e~F~~Dt~~Wk~~V~~-Y~~l~~~~i~~~~iRNVMDMn  373 (506)
T PF03141_consen  297 ITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSG--SIPGISPEEFKEDTKHWKKRVSH-YKKLLGLAIKWGRIRNVMDMN  373 (506)
T ss_pred             cCcCCcccccccccCCCCChhhhccCchhhhcC--CcCCCCHHHHHHHHHHHHHHHHH-HHHhhcccccccceeeeeeec
Confidence            688999988889999999999999999999971  13347899999999999999998 887776  8999999999999


Q ss_pred             CchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcccccccchhHHHHhh
Q 027471           79 AVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEV  158 (223)
Q Consensus        79 aG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~  158 (223)
                      ||||||||||.+++||||||+|..+++||++||||||||+||||||+||||||||||||+++|||.+++||++++||+||
T Consensus       374 Ag~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEm  453 (506)
T PF03141_consen  374 AGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEM  453 (506)
T ss_pred             ccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEeecCC----CeeEEEEEe
Q 027471          159 DRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTND----NQGMLCVHK  207 (223)
Q Consensus       159 DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~~~~----~e~~L~~~K  207 (223)
                      ||||||||++||||+.+++.+|++|+++|||++.+.++++    +|++|+|||
T Consensus       454 DRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K  506 (506)
T PF03141_consen  454 DRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK  506 (506)
T ss_pred             HhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence            9999999999999999999999999999999999998765    799999998

; GO: 0008168 methyltransferase activity

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=100.00  E-value=1.8e-41  Score=323.51  Aligned_cols=188  Identities=22%  Similarity=0.371  Sum_probs=155.1

Q ss_pred             CCCCCcCCCCCCCCC------CCCCcccccccCc--cCCCCc--cchhHhhhhHHHHHhhhhhhccC----C--CCCCce
Q 027471            9 SKRGSRWPLQWPLRL------EKPPYWLNSEAGV--YGKAAP--EDFTADYQHWKNVVSKSYLNGMG----I--NWSFVR   72 (223)
Q Consensus         9 ~~~g~~~p~~WP~rl------~~~p~rl~~~~g~--~~~~~~--~~f~~D~~~W~~~v~~~Y~~~l~----i--~~~~iR   72 (223)
                      .++||+.|.+||+++      |+|+++|++.++.  |.....  =.|.....+|++++.+ |++.|+    +  ..|+||
T Consensus        41 ~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~-Yid~i~~~~~~~~~~g~iR  119 (506)
T PF03141_consen   41 PPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADH-YIDQIAEMIPLIKWGGGIR  119 (506)
T ss_pred             CCccCCCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHH-HHHHHHHHhhccccCCceE
Confidence            467999999999999      7889999886654  222222  2356677778999998 997664    3  558999


Q ss_pred             EEEeeCCchHHHHHHhhCCCeEEEEecCCCCCC-ChhhHHhhCcccccccc-cccCCCCCcchhhhhhhhhhcccccccc
Q 027471           73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGLFGLYHDW-CESFNTYPRTYDLLHADHLFSTIKKRCS  150 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~-~l~~i~eRGLi~~~~dw-ce~f~tyPrtyDllH~~~lfs~~~~rC~  150 (223)
                      ++||+|||+|+|||+|.+++|++|+++|.+++. +.||++|||+++++.-. .++|+++.++|||+||+        ||.
T Consensus       120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcs--------rc~  191 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCS--------RCL  191 (506)
T ss_pred             EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcc--------ccc
Confidence            999999999999999999999999999999874 99999999999887632 24666566999999999        666


Q ss_pred             hh------HHHHhhhhcccCCcEEEEecc----------HHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEecc
Q 027471          151 LK------AVVAEVDRILRPDGNLILRDD----------AETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKTY  209 (223)
Q Consensus       151 i~------~vl~E~DRILRPgG~~ii~D~----------~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K~~  209 (223)
                      +.      .+|+|+|||||||||||++.+          .+++.+|++++++|||+....    +..+.|.||+.
T Consensus       192 i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~----~~~~aIwqKp~  262 (506)
T PF03141_consen  192 IPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE----KGDTAIWQKPT  262 (506)
T ss_pred             ccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee----eCCEEEEeccC
Confidence            65      899999999999999999833          457899999999999998754    33489999975

; GO: 0008168 methyltransferase activity

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.37  E-value=6.6e-14  Score=100.70  Aligned_cols=89  Identities=21%  Similarity=0.325  Sum_probs=61.4

Q ss_pred             EeeCCchHHHHHHhhCC-C--eEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCCcchhhhhhhhhhcccccc
Q 027471           75 MDMRAVYGGFAAALKDL-K--VWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYPRTYDLLHADHLFSTIKKR  148 (223)
Q Consensus        75 LDmgaG~GgFAA~L~~~-~--V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyPrtyDllH~~~lfs~~~~r  148 (223)
                      ||+|||.|-+++.|.++ +  |+++.+++.    .++.+.++.-..   ..+.--+.++.-+++||+|+|.++|++..  
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~----~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--   74 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEE----MLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--   74 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HH----HHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHH----HHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--
Confidence            89999999999999888 4  455555443    444444444322   33322234433339999999999999883  


Q ss_pred             cchhHHHHhhhhcccCCcEEEE
Q 027471          149 CSLKAVVAEVDRILRPDGNLIL  170 (223)
Q Consensus       149 C~i~~vl~E~DRILRPgG~~ii  170 (223)
                       ....++.|+.|+|||||+++|
T Consensus        75 -~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   75 -DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             -HHHHHHHHHHHHEEEEEEEEE
T ss_pred             -CHHHHHHHHHHHcCcCeEEeC
Confidence             457999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.14  E-value=1.6e-11  Score=110.20  Aligned_cols=109  Identities=19%  Similarity=0.321  Sum_probs=77.1

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCC-C--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhh
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-K--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLL  136 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDll  136 (223)
                      +.+.++|++|.  +|||+|||.|+++.+++++ +  |+.+++++.+.....+.+.++||...+.=-|+.+..++.+||-|
T Consensus        54 ~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~I  131 (273)
T PF02353_consen   54 LCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRI  131 (273)
T ss_dssp             HHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEE
T ss_pred             HHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEE
Confidence            66778888774  8999999999999999998 5  45566665544445567789998764443345666677799999


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      -|-+.|.|..+ -..+.++..++|+|+|||.+++.
T Consensus       132 vSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen  132 VSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             EEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred             EEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence            99888988764 34678999999999999999986

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02244 tocopherol O-methyltransferase

Probab=99.14  E-value=5.2e-11  Score=108.97  Aligned_cols=98  Identities=17%  Similarity=0.290  Sum_probs=72.0

Q ss_pred             CceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCccc---cc-ccccccCCCCC-cchhhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFG---LY-HDWCESFNTYP-RTYDLLHADHL  141 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~---~~-~dwce~f~tyP-rtyDllH~~~l  141 (223)
                      ...+|||+|||.|+++..|.++   .|+.++++|.......+.+.++|+..   .. .|. +.++ |+ .+||+|.|...
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~-~~~~~FD~V~s~~~  195 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA-LNQP-FEDGQFDLVWSMES  195 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc-ccCC-CCCCCccEEEECCc
Confidence            4567999999999999999875   57777777664443444555667643   22 232 2233 44 89999999888


Q ss_pred             hcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +.+..+.   ..+|.|+-|+|||||.+++.+
T Consensus       196 ~~h~~d~---~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        196 GEHMPDK---RKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             hhccCCH---HHHHHHHHHHcCCCcEEEEEE
Confidence            8777653   589999999999999999964

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.09  E-value=1.5e-10  Score=102.33  Aligned_cols=95  Identities=16%  Similarity=0.193  Sum_probs=68.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh-------Cc--ccccccccccCCCCC-cchhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER-------GL--FGLYHDWCESFNTYP-RTYDL  135 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR-------GL--i~~~~dwce~f~tyP-rtyDl  135 (223)
                      -.+|||+|||+|.++..|.++     .|+.+.+++.    .++.+.+|       +.  +..+..-++.++ || ++||+
T Consensus        74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~----ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~  148 (261)
T PLN02233         74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSE----QLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDA  148 (261)
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHH----HHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeE
Confidence            357999999999999888764     4777777655    34433333       12  223333234454 45 89999


Q ss_pred             hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      |.+...+++..+   ...+|.|+-|+|||||.+++.|-
T Consensus       149 V~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d~  183 (261)
T PLN02233        149 ITMGYGLRNVVD---RLKAMQEMYRVLKPGSRVSILDF  183 (261)
T ss_pred             EEEecccccCCC---HHHHHHHHHHHcCcCcEEEEEEC
Confidence            999988887765   46899999999999999998753

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.07  E-value=4e-10  Score=96.02  Aligned_cols=147  Identities=19%  Similarity=0.243  Sum_probs=98.2

Q ss_pred             hhHHHHHhhh-hh-hccCCCCCCceEEEeeCCchHHHHHHhhC--C--CeEEEEecCCCCCCChhhHHhhCcc--ccccc
Q 027471           50 QHWKNVVSKS-YL-NGMGINWSFVRNVMDMRAVYGGFAAALKD--L--KVWVMNVVPIESPDTLPIIYERGLF--GLYHD  121 (223)
Q Consensus        50 ~~W~~~v~~~-Y~-~~l~i~~~~iRnvLDmgaG~GgFAA~L~~--~--~V~vmnv~p~~~~~~l~~i~eRGLi--~~~~d  121 (223)
                      +.|++++-.+ ++ ..  ++.  -.+|||+|||+|.++..++.  .  .|+.+..++.......+.+.+.|+.  -.++.
T Consensus        27 ~~~~~~~~d~l~l~~~--l~~--g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~  102 (187)
T PRK00107         27 ELWERHILDSLAIAPY--LPG--GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG  102 (187)
T ss_pred             HHHHHHHHHHHHHHhh--cCC--CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec
Confidence            4788777431 11 22  233  45799999999998887763  2  4666666554433344555666763  34444


Q ss_pred             ccccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEee--c---
Q 027471          122 WCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY--T---  196 (223)
Q Consensus       122 wce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~--~---  196 (223)
                      -.+.+.. +.+||+|-|..       -..++.++.++.|+|||||.+++-+.......++.+++.+-|.+....  +   
T Consensus       103 d~~~~~~-~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  174 (187)
T PRK00107        103 RAEEFGQ-EEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG  174 (187)
T ss_pred             cHhhCCC-CCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence            3334443 57999999863       234678999999999999999999888888899999999999865332  1   


Q ss_pred             -CCCeeEEEEEec
Q 027471          197 -NDNQGMLCVHKT  208 (223)
Q Consensus       197 -~~~e~~L~~~K~  208 (223)
                       ++...+.|.+|+
T Consensus       175 ~~~~~~~~~~~~~  187 (187)
T PRK00107        175 LDGERHLVIIRKK  187 (187)
T ss_pred             CCCcEEEEEEecC
Confidence             223445555653

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.05  E-value=3.9e-11  Score=105.29  Aligned_cols=115  Identities=17%  Similarity=0.279  Sum_probs=67.9

Q ss_pred             hhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCc--ccccccc
Q 027471           50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGL--FGLYHDW  122 (223)
Q Consensus        50 ~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGL--i~~~~dw  122 (223)
                      +.|++.+.+ .   ++...  -..|||++||+|-.+..|.++     .|..+.+++..-....+.+.+.|.  +-.+..-
T Consensus        33 ~~wr~~~~~-~---~~~~~--g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~d  106 (233)
T PF01209_consen   33 RRWRRKLIK-L---LGLRP--GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGD  106 (233)
T ss_dssp             ----SHHHH-H---HT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-B
T ss_pred             HHHHHHHHh-c---cCCCC--CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcC
Confidence            788887765 2   33333  348999999999999988764     466777766533222233333444  3344433


Q ss_pred             cccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          123 CESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       123 ce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      +|.++.-++|||.+-|+..+....+   .+..|.||-|||||||.+++-|-
T Consensus       107 a~~lp~~d~sfD~v~~~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile~  154 (233)
T PF01209_consen  107 AEDLPFPDNSFDAVTCSFGLRNFPD---RERALREMYRVLKPGGRLVILEF  154 (233)
T ss_dssp             TTB--S-TT-EEEEEEES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHhcCCCCceeEEEHHhhHHhhCC---HHHHHHHHHHHcCCCeEEEEeec
Confidence            5566644499999999877776654   46899999999999999988643

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.04  E-value=1.4e-10  Score=98.01  Aligned_cols=118  Identities=23%  Similarity=0.307  Sum_probs=78.2

Q ss_pred             eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCC--CCCcchhhhhhhhhhccc
Q 027471           72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN--TYPRTYDLLHADHLFSTI  145 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~--tyPrtyDllH~~~lfs~~  145 (223)
                      +.|||+|||.|+++..+.+.    .|+.+.++|.......+.+.+.|+-..+.--+..+.  .++.+||+|++..+|.+.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            36999999999999988764    355566644332223333445566432211112222  256899999999999887


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEeccHH----------------HHHHHHHHHHhCCCeeE
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~~~----------------~~~~i~~i~~~l~W~~~  192 (223)
                      .+   ...++.++.|+|||||++++.+...                ...++.+++..-.+++.
T Consensus        81 ~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~  140 (224)
T smart00828       81 KD---KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV  140 (224)
T ss_pred             CC---HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence            65   4689999999999999999986421                12445566666666654

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.03  E-value=3.1e-10  Score=98.81  Aligned_cols=93  Identities=14%  Similarity=0.165  Sum_probs=68.7

Q ss_pred             CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTI  145 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~  145 (223)
                      .-..|||+|||.|.++.+|.++    .|+.+.++|.    .++.+.++++--...| .+.+. .+.+||+|+|..+|.+.
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~----~~~~a~~~~~~~~~~d-~~~~~-~~~~fD~v~~~~~l~~~  102 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPE----MVAAARERGVDARTGD-VRDWK-PKPDTDVVVSNAALQWV  102 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHH----HHHHHHhcCCcEEEcC-hhhCC-CCCCceEEEEehhhhhC
Confidence            3478999999999999999876    4666666543    5566666664322222 22331 23899999999999877


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEe
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      .+   .+.++.|+-|+|||||.+++.
T Consensus       103 ~d---~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103        103 PE---HADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             CC---HHHHHHHHHHhCCCCcEEEEE
Confidence            64   368999999999999999997

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.00  E-value=3.1e-10  Score=100.85  Aligned_cols=116  Identities=16%  Similarity=0.261  Sum_probs=81.9

Q ss_pred             hhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc--cccccccc
Q 027471           50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL--FGLYHDWC  123 (223)
Q Consensus        50 ~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL--i~~~~dwc  123 (223)
                      ..|++..-.    .+++.  .--+|||++||+|-+|..+++.    .|+.+.+++.+-....+..-+.|.  +-.++.-.
T Consensus        37 ~~Wr~~~i~----~~~~~--~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA  110 (238)
T COG2226          37 RLWRRALIS----LLGIK--PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA  110 (238)
T ss_pred             HHHHHHHHH----hhCCC--CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEech
Confidence            678777654    34433  5678999999999999999887    467777755532223333333332  22345446


Q ss_pred             ccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          124 ESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       124 e~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      |.+|+-++|||++-++..+.+..+   ++.+|.||.|||+|||.+++-|..
T Consensus       111 e~LPf~D~sFD~vt~~fglrnv~d---~~~aL~E~~RVlKpgG~~~vle~~  158 (238)
T COG2226         111 ENLPFPDNSFDAVTISFGLRNVTD---IDKALKEMYRVLKPGGRLLVLEFS  158 (238)
T ss_pred             hhCCCCCCccCEEEeeehhhcCCC---HHHHHHHHHHhhcCCeEEEEEEcC
Confidence            788844499999999977776664   679999999999999999887543

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.99  E-value=3.1e-10  Score=89.33  Aligned_cols=97  Identities=21%  Similarity=0.326  Sum_probs=67.0

Q ss_pred             CCceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhccccc
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKK  147 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~~  147 (223)
                      ..-.+|||+|||+|.++..|.+.+..+.-+-+..  ..++.   +-.....++  +.....| ++||+|+|..+|++..+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~--~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~d   93 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISP--QMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLPD   93 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSH--HHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCH--HHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhccc
Confidence            3456899999999999999998866443331110  01111   111111111  1122234 99999999999999885


Q ss_pred             ccchhHHHHhhhhcccCCcEEEEeccHH
Q 027471          148 RCSLKAVVAEVDRILRPDGNLILRDDAE  175 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii~D~~~  175 (223)
                         ...+|.++-|+|||||++++++...
T Consensus        94 ---~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   94 ---PEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             ---HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             ---HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence               5799999999999999999997753

...

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.98  E-value=1.1e-09  Score=94.62  Aligned_cols=97  Identities=18%  Similarity=0.194  Sum_probs=66.7

Q ss_pred             CCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc-ccccccccccCCCCCcchhhhhhhhhhccc
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNTYPRTYDLLHADHLFSTI  145 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~tyPrtyDllH~~~lfs~~  145 (223)
                      ....+|||+|||+|.++..|.+++  |+.+.++|.    .++.+.+++- ...+..-.+.++..+++||+|.|...+...
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~----~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~  116 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPP----MLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWC  116 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHH----HHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhc
Confidence            346789999999999999998764  555665543    4555555532 122221123444334899999987666543


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEec
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      .+   ...+|.|+.|+|||||.++++.
T Consensus       117 ~d---~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        117 GN---LSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             CC---HHHHHHHHHHHcCCCeEEEEEe
Confidence            32   4689999999999999999983

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.97  E-value=2.6e-10  Score=100.93  Aligned_cols=95  Identities=17%  Similarity=0.301  Sum_probs=65.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhh----CcccccccccccCCC--CC-cchhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYER----GLFGLYHDWCESFNT--YP-RTYDLLHADH  140 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eR----GLi~~~~dwce~f~t--yP-rtyDllH~~~  140 (223)
                      -.+|||+|||+|+++..|++.   .|+.++++|.    .++.+.++    ..+....   ..+..  || .+||+|++..
T Consensus        53 ~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~----~~~~a~~~~~~~~~i~~~~---~D~~~~~~~~~~FD~V~s~~  125 (263)
T PTZ00098         53 NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEK----MVNIAKLRNSDKNKIEFEA---NDILKKDFPENTFDMIYSRD  125 (263)
T ss_pred             CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHH----HHHHHHHHcCcCCceEEEE---CCcccCCCCCCCeEEEEEhh
Confidence            357999999999999998654   5677777554    33333332    1122222   22222  66 8999999987


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      .|.+... .....++.|+.|+|||||.++++|.
T Consensus       126 ~l~h~~~-~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        126 AILHLSY-ADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             hHHhCCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            7766531 2346899999999999999999865

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.96  E-value=3e-10  Score=96.10  Aligned_cols=97  Identities=15%  Similarity=0.245  Sum_probs=68.1

Q ss_pred             eEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhccccc
Q 027471           72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFSTIKK  147 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~~~~  147 (223)
                      .+|||+|||.|.++..|+++  .|+.+.++|.......+.+.++|+.. ++--|..+..  ++.+||+|-|..+|.+.. 
T Consensus        32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~~~~~~~~~~-  109 (197)
T PRK11207         32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFILSTVVLMFLE-  109 (197)
T ss_pred             CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEEEecchhhCC-
Confidence            57999999999999999988  46777776654333334455666632 1111223333  457899999998876544 


Q ss_pred             ccchhHHHHhhhhcccCCcEEEE
Q 027471          148 RCSLKAVVAEVDRILRPDGNLIL  170 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii  170 (223)
                      ......++.++.|.|||||++++
T Consensus       110 ~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207        110 AKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEE
Confidence            33467999999999999999654

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.96  E-value=4.3e-10  Score=98.03  Aligned_cols=106  Identities=19%  Similarity=0.197  Sum_probs=72.6

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCC-Ccch
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTY-PRTY  133 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~ty-Prty  133 (223)
                      +++.++   ..-.+|||+|||.|.++..|++++  |+.+.++|.......+.+.+.|+..   +++.-.+.++.+ +++|
T Consensus        37 ~l~~l~---~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f  113 (255)
T PRK11036         37 LLAELP---PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV  113 (255)
T ss_pred             HHHhcC---CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence            455443   223589999999999999999885  5566665543332333344456532   222111223333 4899


Q ss_pred             hhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       134 DllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      |+|.|..++++..+.   ..++.++.|+|||||.+++.
T Consensus       114 D~V~~~~vl~~~~~~---~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        114 DLILFHAVLEWVADP---KSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             CEEEehhHHHhhCCH---HHHHHHHHHHcCCCeEEEEE
Confidence            999999999877653   58999999999999999876

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.96  E-value=6.8e-10  Score=94.27  Aligned_cols=114  Identities=15%  Similarity=0.291  Sum_probs=72.3

Q ss_pred             hhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc--ccccc
Q 027471           50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDW  122 (223)
Q Consensus        50 ~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dw  122 (223)
                      ..|.+.+-+    .+.++.+  .+|||+|||.|.++..|.+.     .|+.+.++|.......+...+.++..  .++.-
T Consensus        31 ~~~~~~~l~----~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d  104 (231)
T TIGR02752        31 KKWRKDTMK----RMNVQAG--TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGN  104 (231)
T ss_pred             HHHHHHHHH----hcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEec
Confidence            445544433    3444443  58999999999999988754     46667665543222222223334422  22221


Q ss_pred             cccCCCCC-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          123 CESFNTYP-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       123 ce~f~tyP-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      ++.++ +| .+||+|++...+.+..+   ...++.|+-|+|||||.+++.+.
T Consensus       105 ~~~~~-~~~~~fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       105 AMELP-FDDNSFDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             hhcCC-CCCCCccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEEEC
Confidence            22222 45 89999999877766554   35889999999999999998754

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.91  E-value=6.2e-10  Score=94.10  Aligned_cols=96  Identities=18%  Similarity=0.243  Sum_probs=65.6

Q ss_pred             eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhccccc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFSTIKK  147 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~~~~  147 (223)
                      .+|||+|||+|.++.+|++++  |+.+.++|..-....+.+.+.|+. +...-+ .+..  ++.+||+|.|..+|.+...
T Consensus        32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~-d~~~~~~~~~fD~I~~~~~~~~~~~  109 (195)
T TIGR00477        32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP-LRTDAY-DINAAALNEDYDFIFSTVVFMFLQA  109 (195)
T ss_pred             CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEec-cchhccccCCCCEEEEecccccCCH
Confidence            489999999999999998874  666776654332233344455653 111111 1222  4578999999888876542


Q ss_pred             ccchhHHHHhhhhcccCCcEEEE
Q 027471          148 RCSLKAVVAEVDRILRPDGNLIL  170 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii  170 (223)
                       -..+.++-++.|.|+|||++++
T Consensus       110 -~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477       110 -GRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             -HHHHHHHHHHHHHhCCCcEEEE
Confidence             3467899999999999998544

Part of a tellurite-reducing operon tehA and tehB

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.90  E-value=4e-10  Score=84.66  Aligned_cols=101  Identities=18%  Similarity=0.220  Sum_probs=65.2

Q ss_pred             eEEEeeCCchHHHHHHhhC--C--CeEEEEecCCCCCCChhhHHhhCcccccccccccC---CCCCcchhhhhhhh-hhc
Q 027471           72 RNVMDMRAVYGGFAAALKD--L--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF---NTYPRTYDLLHADH-LFS  143 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~--~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f---~tyPrtyDllH~~~-lfs  143 (223)
                      .+|||+|||+|.++.+|++  .  .|+.+..+|..-....+.+.+.++..-+.=-|+.+   ...+..||+|.+.. .+.
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~   82 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTLH   82 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSGG
T ss_pred             CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCccc
Confidence            4789999999999999988  5  45555555543332333333344433222112344   33556799999988 222


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      .+.+......+|-++.+.|||||++++++
T Consensus        83 ~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   83 FLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            23322344588999999999999999975

...

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.85  E-value=9.7e-09  Score=85.41  Aligned_cols=129  Identities=14%  Similarity=0.013  Sum_probs=81.1

Q ss_pred             HHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccC-CC
Q 027471           54 NVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF-NT  128 (223)
Q Consensus        54 ~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f-~t  128 (223)
                      ..+...-++.+.+..  -.+|||+|||.|.++.+++.+    .|+.+.+.|.......+.+...|+-. +.-.|+.. ..
T Consensus        17 ~~~r~~~~~~l~~~~--~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~   93 (187)
T PRK08287         17 EEVRALALSKLELHR--AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIE   93 (187)
T ss_pred             HHHHHHHHHhcCCCC--CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhh
Confidence            334432334455443  457999999999999888654    46666665543221222222334422 11111222 23


Q ss_pred             CCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec-cHHHHHHHHHHHHhCCCee
Q 027471          129 YPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       129 yPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D-~~~~~~~i~~i~~~l~W~~  191 (223)
                      ++..||++.+++..      ..+..++.++.|+|+|||.+++.+ ..+...++.++++...+..
T Consensus        94 ~~~~~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~  151 (187)
T PRK08287         94 LPGKADAIFIGGSG------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE  151 (187)
T ss_pred             cCcCCCEEEECCCc------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence            56789999886432      245688999999999999999976 4556677888888888853

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.85  E-value=5.5e-09  Score=96.08  Aligned_cols=95  Identities=13%  Similarity=0.159  Sum_probs=68.2

Q ss_pred             eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhh----Cc---ccccccccccCCCCCcchhhhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYER----GL---FGLYHDWCESFNTYPRTYDLLHADHLF  142 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eR----GL---i~~~~dwce~f~tyPrtyDllH~~~lf  142 (223)
                      .+|||+|||.|.++..|+..+  |+.+..++.    .++++.++    ++   +..++.-++.++..+++||+|-|..++
T Consensus       133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~----~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVDK----NVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHH----HHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            479999999999999998874  566655543    34444333    22   112222123344334899999999999


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      .|..+.   +.+|.|+-|+|||||.+++++.
T Consensus       209 eHv~d~---~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        209 EHVANP---AEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             HhcCCH---HHHHHHHHHHcCCCcEEEEEEC
Confidence            988763   6899999999999999999854

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.84  E-value=1.9e-09  Score=98.55  Aligned_cols=96  Identities=15%  Similarity=0.118  Sum_probs=62.7

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHh-hCc---ccccccccccCCCCCcchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYE-RGL---FGLYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~e-RGL---i~~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      -+.|||+|||.|.++.+|++.+   |+.+..++.... +.+.+.. .+.   +-+...=.+.++. +.+||+|+|.+++.
T Consensus       123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~-q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~  200 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLC-QFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY  200 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHH-HHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence            3789999999999999998864   555554332111 0011110 011   1122211123443 68999999998887


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      |..+   ...+|.++.|+|||||.+++.
T Consensus       201 H~~d---p~~~L~~l~~~LkpGG~lvl~  225 (322)
T PRK15068        201 HRRS---PLDHLKQLKDQLVPGGELVLE  225 (322)
T ss_pred             ccCC---HHHHHHHHHHhcCCCcEEEEE
Confidence            7543   468999999999999999986

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.82  E-value=2.1e-09  Score=80.01  Aligned_cols=91  Identities=22%  Similarity=0.345  Sum_probs=54.4

Q ss_pred             EeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccc-cccccCCCCC-cchhhhhhhhhhcccc
Q 027471           75 MDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYH-DWCESFNTYP-RTYDLLHADHLFSTIK  146 (223)
Q Consensus        75 LDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~-dwce~f~tyP-rtyDllH~~~lfs~~~  146 (223)
                      ||+|||+|.+..++.++    .++.+.++|..-....+...+.+...  ... +--+.+...+ ++||+|.+.+++++..
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            79999999999999776    56778888887654555555555422  111 1011222233 5999999999999984


Q ss_pred             cccchhHHHHhhhhcccCCcEE
Q 027471          147 KRCSLKAVVAEVDRILRPDGNL  168 (223)
Q Consensus       147 ~rC~i~~vl~E~DRILRPgG~~  168 (223)
                      +   ++.++..+.|+|||||.+
T Consensus        81 ~---~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   81 D---IEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ----HHHHHHHHTTT-TSS-EE
T ss_pred             h---HHHHHHHHHHHcCCCCCC
Confidence            3   569999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.82  E-value=1.7e-09  Score=96.43  Aligned_cols=117  Identities=15%  Similarity=0.240  Sum_probs=78.2

Q ss_pred             EEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhcccccc
Q 027471           73 NVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFSTIKKR  148 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~~~~r  148 (223)
                      +|||+|||.|.++.+|++++  |+.+.+++.......+.+.+.|+ . +.--|..+..  .+..||+|.|..+|.+.. +
T Consensus       123 ~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~-~  199 (287)
T PRK12335        123 KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMFLN-R  199 (287)
T ss_pred             CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhhCC-H
Confidence            79999999999999998875  55565554433323344556676 2 1111223333  368999999998887654 3


Q ss_pred             cchhHHHHhhhhcccCCcEEEEe---ccH--------H---HHHHHHHHHHhCCCeeEEe
Q 027471          149 CSLKAVVAEVDRILRPDGNLILR---DDA--------E---TIVEVEDLVKSLHWDVRMI  194 (223)
Q Consensus       149 C~i~~vl~E~DRILRPgG~~ii~---D~~--------~---~~~~i~~i~~~l~W~~~~~  194 (223)
                      -.+..++.+|.|+|+|||++++-   +..        .   .-.+++.+++.  |+....
T Consensus       200 ~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~  257 (287)
T PRK12335        200 ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY  257 (287)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence            45679999999999999996553   111        1   13567777776  887543

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.79  E-value=1.8e-08  Score=83.24  Aligned_cols=120  Identities=14%  Similarity=0.192  Sum_probs=77.5

Q ss_pred             eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCccc-cc-ccccccCCCCCcchhhhhhhhhhcccc-
Q 027471           72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFG-LY-HDWCESFNTYPRTYDLLHADHLFSTIK-  146 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~-~~-~dwce~f~tyPrtyDllH~~~lfs~~~-  146 (223)
                      .+|||+|||+|.++..+..++  |+.+.+.|.......+.+...|+-. ++ .|+   +...+.+||+|-++.-|.... 
T Consensus        21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~fD~Vi~n~p~~~~~~   97 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDL---FKGVRGKFDVILFNPPYLPLED   97 (179)
T ss_pred             CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccc---ccccCCcccEEEECCCCCCCcc
Confidence            469999999999999998874  4444554443221222222233311 22 232   223357999988775553221 


Q ss_pred             -----------------cccchhHHHHhhhhcccCCcEEEEeccHHH-HHHHHHHHHhCCCeeEEe
Q 027471          147 -----------------KRCSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVRMI  194 (223)
Q Consensus       147 -----------------~rC~i~~vl~E~DRILRPgG~~ii~D~~~~-~~~i~~i~~~l~W~~~~~  194 (223)
                                       .++.++.+|.++.|+|+|||.+++.+.... ...+.++++...++....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~  163 (179)
T TIGR00537        98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV  163 (179)
T ss_pred             hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence                             123467899999999999999999866554 667777788888887644

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.77  E-value=3.9e-09  Score=92.07  Aligned_cols=102  Identities=12%  Similarity=0.125  Sum_probs=69.2

Q ss_pred             ceEEEeeCCchHHHHHHhhC----C--CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKD----L--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~----~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs  143 (223)
                      -.+|||+|||+|..+.+|++    .  .|+.+..+|.......+.+.+.|+..-+.=-|..+...| ..||++-|...++
T Consensus        57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~  136 (247)
T PRK15451         57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ  136 (247)
T ss_pred             CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHH
Confidence            35799999999999887765    2  466666666543333333333454322222234555555 5699998887777


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      +..+ .....++.|+.|+|+|||.+++.|.
T Consensus       137 ~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        137 FLEP-SERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             hCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            6653 3356899999999999999999864

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.77  E-value=1.5e-09  Score=94.65  Aligned_cols=148  Identities=16%  Similarity=0.295  Sum_probs=93.9

Q ss_pred             hhHHHHHhhhhhhcc--CCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhh--Cccc--cccc
Q 027471           50 QHWKNVVSKSYLNGM--GINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYER--GLFG--LYHD  121 (223)
Q Consensus        50 ~~W~~~v~~~Y~~~l--~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eR--GLi~--~~~d  121 (223)
                      ..|.++.+  |-..|  .+....+++++++|||-|-|.+.|+.+  .++++.++|.    .++.+.+|  ++..  ..+ 
T Consensus        23 ~~~YE~~K--~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~----Al~~Ar~Rl~~~~~V~~~~-   95 (201)
T PF05401_consen   23 TSWYERRK--YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR----ALARARERLAGLPHVEWIQ-   95 (201)
T ss_dssp             T-HHHHHH--HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH----HHHHHHHHTTT-SSEEEEE-
T ss_pred             CCHHHHHH--HHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHH----HHHHHHHhcCCCCCeEEEE-
Confidence            35666654  33323  377899999999999999999999998  7899998776    44444433  3322  222 


Q ss_pred             ccccCCC-CC-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHH----------HHHHHHHHHhCCC
Q 027471          122 WCESFNT-YP-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAET----------IVEVEDLVKSLHW  189 (223)
Q Consensus       122 wce~f~t-yP-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~----------~~~i~~i~~~l~W  189 (223)
                        ..++. .| .+|||||++.++-.+.+.-.+..++-.+...|+|||.+|+-.-.+.          .+.|..++...-=
T Consensus        96 --~dvp~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~  173 (201)
T PF05401_consen   96 --ADVPEFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLT  173 (201)
T ss_dssp             --S-TTT---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSE
T ss_pred             --CcCCCCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhh
Confidence              34555 56 9999999999999888766678899999999999999999643331          2455555544443


Q ss_pred             eeEEe---ecCCCeeEEEEE
Q 027471          190 DVRMI---YTNDNQGMLCVH  206 (223)
Q Consensus       190 ~~~~~---~~~~~e~~L~~~  206 (223)
                      ++.-.   ....+|.-|+++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~  193 (201)
T PF05401_consen  174 EVERVECRGGSPNEDCLLAR  193 (201)
T ss_dssp             EEEEEEEE-SSTTSEEEEEE
T ss_pred             heeEEEEcCCCCCCceEeee
Confidence            43321   123456666664

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.77  E-value=9.6e-09  Score=96.12  Aligned_cols=102  Identities=19%  Similarity=0.293  Sum_probs=69.4

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC-C--eEEEEecCCCCCCChhhHHhh--CcccccccccccCCCCCcchhhh
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-K--VWVMNVVPIESPDTLPIIYER--GLFGLYHDWCESFNTYPRTYDLL  136 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-~--V~vmnv~p~~~~~~l~~i~eR--GLi~~~~dwce~f~tyPrtyDll  136 (223)
                      +.++++.+  .+|||+|||+|+++..++++ +  |+.+.++|.    +++.+.++  |+.  +.--+..+...+.+||.|
T Consensus       161 ~~l~l~~g--~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~----~l~~A~~~~~~l~--v~~~~~D~~~l~~~fD~I  232 (383)
T PRK11705        161 RKLQLKPG--MRVLDIGCGWGGLARYAAEHYGVSVVGVTISAE----QQKLAQERCAGLP--VEIRLQDYRDLNGQFDRI  232 (383)
T ss_pred             HHhCCCCC--CEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHhccCe--EEEEECchhhcCCCCCEE
Confidence            33445444  58999999999999999865 4  555665544    44444443  331  111122333346899999


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      .|..+|.+... ...+.++.++.|+|+|||.+++.+
T Consensus       233 vs~~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        233 VSVGMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             EEeCchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            99888877643 235689999999999999999963

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.76  E-value=5.9e-09  Score=87.94  Aligned_cols=125  Identities=14%  Similarity=0.191  Sum_probs=79.5

Q ss_pred             hhHHHHHhhhhhhccC-CCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccccc
Q 027471           50 QHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDW  122 (223)
Q Consensus        50 ~~W~~~v~~~Y~~~l~-i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dw  122 (223)
                      ..|++.+.. =+..+. ++   -.+|||+|||+|.++..|+..    .|+.+..++....-..+.+.+.|+-.  +++  
T Consensus        25 ~~~~~~~~d-~i~~~~~~~---~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~--   98 (181)
T TIGR00138        25 EIWERHILD-SLKLLEYLD---GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVN--   98 (181)
T ss_pred             HHHHHHHHH-HHHHHHhcC---CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEe--
Confidence            466666644 111111 22   468999999999877766532    47777665543222233344456532  333  


Q ss_pred             cccCCC--CCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCC
Q 027471          123 CESFNT--YPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLH  188 (223)
Q Consensus       123 ce~f~t--yPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~  188 (223)
                       .....  .+.+||+|-|.. +      ..++.++.++.|+|||||.+++........++..+.+++|
T Consensus        99 -~d~~~~~~~~~fD~I~s~~-~------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~  158 (181)
T TIGR00138        99 -GRAEDFQHEEQFDVITSRA-L------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQ  158 (181)
T ss_pred             -cchhhccccCCccEEEehh-h------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhh
Confidence             23333  348999998864 2      2356788899999999999999987777777777766644

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00740 methyltransferase, putative

Probab=98.76  E-value=3.9e-09  Score=90.94  Aligned_cols=102  Identities=13%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             ceEEEeeCCchHHHHHHhhCC------CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL------KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~------~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs  143 (223)
                      -.+|||+|||.|.++..|.++      .|+.+.++|.......+.+.+.+...-+.=-|..+..+| ..+|++.|..+++
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l~  133 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ  133 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecchh
Confidence            457999999999999888763      366677655432222222222233211111123555555 5799999888887


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      +..+. ....+|.|+.|+|+|||.++++|.
T Consensus       134 ~~~~~-~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       134 FLPPE-DRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             hCCHH-HHHHHHHHHHHhcCCCeEEEEeec
Confidence            66432 245899999999999999999975

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK08317 hypothetical protein; Provisional

Probab=98.75  E-value=1.2e-08  Score=84.91  Aligned_cols=95  Identities=23%  Similarity=0.343  Sum_probs=65.0

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh--CcccccccccccCCC--CC-cchhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER--GLFGLYHDWCESFNT--YP-RTYDLLHADH  140 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR--GLi~~~~dwce~f~t--yP-rtyDllH~~~  140 (223)
                      -.+|||+|||.|.++..++++     .|+.+.+.|.    .++.+.++  +....+.-.+..+..  ++ .+||+||+..
T Consensus        20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~----~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~   95 (241)
T PRK08317         20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEA----MLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR   95 (241)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHH----HHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence            457999999999999988764     3555555433    44444444  111111111122222  34 8999999999


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +|.+..+.   +.++.++-|+|+|||++++.+
T Consensus        96 ~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         96 VLQHLEDP---ARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             hhhccCCH---HHHHHHHHHHhcCCcEEEEEe
Confidence            99887663   589999999999999999864

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.75  E-value=3.6e-08  Score=86.32  Aligned_cols=126  Identities=21%  Similarity=0.192  Sum_probs=80.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK  147 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~  147 (223)
                      -.+|||+|||+|..+.++.+.   .|+.+.+.|.......+.+...|+-..++     +..-..+||+|.|.....    
T Consensus       120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~-----~~~~~~~fD~Vvani~~~----  190 (250)
T PRK00517        120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVY-----LPQGDLKADVIVANILAN----  190 (250)
T ss_pred             CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEE-----EccCCCCcCEEEEcCcHH----
Confidence            467999999999988887765   36667776654332223233334411111     111112799998752211    


Q ss_pred             ccchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471          148 RCSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK  207 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K  207 (223)
                        .+..++-++.|+|||||++++++... ....+...++...+........+.-..++++|
T Consensus       191 --~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~  249 (250)
T PRK00517        191 --PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKK  249 (250)
T ss_pred             --HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEe
Confidence              24477889999999999999997544 45677778888888876444444455556655

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.75  E-value=9.5e-09  Score=87.45  Aligned_cols=123  Identities=17%  Similarity=0.122  Sum_probs=79.1

Q ss_pred             CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccc-cccccCCC-CC-cchhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYH-DWCESFNT-YP-RTYDLLHADH  140 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~-dwce~f~t-yP-rtyDllH~~~  140 (223)
                      .-.+|||+|||+|.++..|+++    .|+.+.++|.......+.+.+.|+..  +++ |..+.++. ++ .+||++.+..
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            4578999999999999988664    46777776654332223233335422  222 32244543 54 8999987642


Q ss_pred             hhc-----ccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhCCCeeE
Q 027471          141 LFS-----TIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       141 lfs-----~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l~W~~~  192 (223)
                      ...     +...+...+.+|.++.|+|+|||.|++. +.......+.+.+..--|.+.
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV  177 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence            211     1122334568999999999999999996 556666677766666667665

>TIGR00452 methyltransferase, putative

Probab=98.74  E-value=7.3e-09  Score=95.05  Aligned_cols=97  Identities=9%  Similarity=-0.024  Sum_probs=60.7

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhh-CcccccccccccCCCCC--cchhhhhhhhhhcc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFNTYP--RTYDLLHADHLFST  144 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f~tyP--rtyDllH~~~lfs~  144 (223)
                      -++|||+|||.|.++.+|+..+   |+.+..++..-. +.+.+... +..+-++--+..+...|  .+||+|-|.+++.|
T Consensus       122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~-q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H  200 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLC-QFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYH  200 (314)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHH-HHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhc
Confidence            4799999999999999888775   333433332110 11111110 11111111111223333  68999999998887


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEe
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ..+   ...+|.|+.|+|||||.+++.
T Consensus       201 ~~d---p~~~L~el~r~LkpGG~Lvle  224 (314)
T TIGR00452       201 RKS---PLEHLKQLKHQLVIKGELVLE  224 (314)
T ss_pred             cCC---HHHHHHHHHHhcCCCCEEEEE
Confidence            653   468999999999999999986

Known examples to date are restricted to the proteobacteria.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.74  E-value=1.8e-08  Score=86.70  Aligned_cols=127  Identities=13%  Similarity=0.172  Sum_probs=71.8

Q ss_pred             eEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccCC-------CCC-cchhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN-------TYP-RTYDLLHA  138 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~-------tyP-rtyDllH~  138 (223)
                      .+|||+|||+|+|+..++++     .|..+.+.|....        .|+.-+..|. +..+       .++ .+||+|-|
T Consensus        53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~--------~~v~~i~~D~-~~~~~~~~i~~~~~~~~~D~V~S  123 (209)
T PRK11188         53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI--------VGVDFLQGDF-RDELVLKALLERVGDSKVQVVMS  123 (209)
T ss_pred             CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC--------CCcEEEecCC-CChHHHHHHHHHhCCCCCCEEec
Confidence            47999999999998888665     3666777663211        1221122221 1111       133 78999888


Q ss_pred             hhhhcccccc--------cchhHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCeeEEe-ecCCCeeEEE
Q 027471          139 DHLFSTIKKR--------CSLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMI-YTNDNQGMLC  204 (223)
Q Consensus       139 ~~lfs~~~~r--------C~i~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~~~~-~~~~~e~~L~  204 (223)
                      +.......+.        +..+.+|.|+-|+|+|||.|++..-     .+.+..+++.++....-.... -..+.|.+++
T Consensus       124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~  203 (209)
T PRK11188        124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV  203 (209)
T ss_pred             CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEEE
Confidence            6433221111        1235799999999999999999522     222333333233222211111 1246899999


Q ss_pred             EEe
Q 027471          205 VHK  207 (223)
Q Consensus       205 ~~K  207 (223)
                      |..
T Consensus       204 ~~~  206 (209)
T PRK11188        204 ATG  206 (209)
T ss_pred             eec
Confidence            974

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.72  E-value=5.7e-09  Score=98.35  Aligned_cols=94  Identities=20%  Similarity=0.338  Sum_probs=66.7

Q ss_pred             CceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhh--Cc---ccc-cccccccCCCCC-cchhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYER--GL---FGL-YHDWCESFNTYP-RTYDLLHAD  139 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eR--GL---i~~-~~dwce~f~tyP-rtyDllH~~  139 (223)
                      .-..|||+|||.|+++..|++.   .|+.+.+++.    .+..+.++  |+   +.. ..|+. .. .+| .+||+|.|.
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~----~l~~A~~~~~~~~~~v~~~~~d~~-~~-~~~~~~fD~I~s~  339 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVN----MISFALERAIGRKCSVEFEVADCT-KK-TYPDNSFDVIYSR  339 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHH----HHHHHHHHhhcCCCceEEEEcCcc-cC-CCCCCCEEEEEEC
Confidence            4568999999999999888765   4666676543    33333322  22   112 23322 12 255 789999999


Q ss_pred             hhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +++.+..+.   +.+|.|+.|+|||||.+++.|
T Consensus       340 ~~l~h~~d~---~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        340 DTILHIQDK---PALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             CcccccCCH---HHHHHHHHHHcCCCeEEEEEE
Confidence            888888764   589999999999999999985

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.70  E-value=1.5e-08  Score=87.75  Aligned_cols=92  Identities=17%  Similarity=0.222  Sum_probs=64.1

Q ss_pred             CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc-ccccccccccCCC--CCcchhhhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNT--YPRTYDLLHADHLF  142 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~t--yPrtyDllH~~~lf  142 (223)
                      ...+|||+|||.|.++..|+++    .|+.+.++|.    .++.+.++-- +.++.   ..+.+  .+.+||+|+|...|
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~----~i~~a~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~l  103 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPA----MLAEARSRLPDCQFVE---ADIASWQPPQALDLIFANASL  103 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHH----HHHHHHHhCCCCeEEE---CchhccCCCCCccEEEEccCh
Confidence            3578999999999999998764    4666666554    3333333210 11222   12222  23799999999888


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      .+..+   ...+|.++-|+|||||.+++.
T Consensus       104 ~~~~d---~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683        104 QWLPD---HLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             hhCCC---HHHHHHHHHHhcCCCcEEEEE
Confidence            76654   358999999999999999996

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.70  E-value=1.9e-08  Score=83.99  Aligned_cols=93  Identities=18%  Similarity=0.245  Sum_probs=63.9

Q ss_pred             eEEEeeCCchHHHHHHhhCCC----eEEEEecCCCCCCChhhHHhhC---cccccccccccCCCCCcchhhhhhhhhhcc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK----VWVMNVVPIESPDTLPIIYERG---LFGLYHDWCESFNTYPRTYDLLHADHLFST  144 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~----V~vmnv~p~~~~~~l~~i~eRG---Li~~~~dwce~f~tyPrtyDllH~~~lfs~  144 (223)
                      .+|||+|||.|.+...|.+..    |+.+.++|.    .++.+.++.   +.-+..| .+.++..+.+||+|.|..++++
T Consensus        36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~----~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~fD~vi~~~~l~~  110 (240)
T TIGR02072        36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAG----MLAQAKTKLSENVQFICGD-AEKLPLEDSSFDLIVSNLALQW  110 (240)
T ss_pred             CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHH----HHHHHHHhcCCCCeEEecc-hhhCCCCCCceeEEEEhhhhhh
Confidence            679999999999999998762    455555433    233333332   1112222 2233434489999999988876


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEec
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      ..+   ...++.++.|+|+|||.+++..
T Consensus       111 ~~~---~~~~l~~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       111 CDD---LSQALSELARVLKPGGLLAFST  135 (240)
T ss_pred             ccC---HHHHHHHHHHHcCCCcEEEEEe
Confidence            544   4689999999999999999974

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.68  E-value=3e-08  Score=88.85  Aligned_cols=114  Identities=20%  Similarity=0.182  Sum_probs=72.9

Q ss_pred             eEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCC-Ccchhhhhhhhhhccccc
Q 027471           72 RNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY-PRTYDLLHADHLFSTIKK  147 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~ty-PrtyDllH~~~lfs~~~~  147 (223)
                      .+|||+|||+|.++.++++.   .|+.+.+.|.......+.+...|+-..+..-+.....+ +..||+|.|..+..    
T Consensus       161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~----  236 (288)
T TIGR00406       161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE----  236 (288)
T ss_pred             CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH----
Confidence            68999999999988777665   46667665553322222222334432233323323333 47899999864322    


Q ss_pred             ccchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCeeE
Q 027471          148 RCSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~~~  192 (223)
                        .+..++-++.|+|||||+++++.... ....+.+.+++- |+..
T Consensus       237 --~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~  279 (288)
T TIGR00406       237 --VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVV  279 (288)
T ss_pred             --HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Ccee
Confidence              23578899999999999999986543 345666666665 7654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK05785 hypothetical protein; Provisional

Probab=98.67  E-value=2.5e-08  Score=86.64  Aligned_cols=104  Identities=15%  Similarity=0.225  Sum_probs=69.5

Q ss_pred             hhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccC
Q 027471           50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF  126 (223)
Q Consensus        50 ~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f  126 (223)
                      ..|++.+-+ .+... +..  -.+|||+|||+|-++..|.++   .|+.+.+++.    .++.+.+++  ..++..++.+
T Consensus        35 ~~wr~~~~~-~l~~~-~~~--~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~----Ml~~a~~~~--~~~~~d~~~l  104 (226)
T PRK05785         35 VRWRAELVK-TILKY-CGR--PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAEN----MLKMNLVAD--DKVVGSFEAL  104 (226)
T ss_pred             HHHHHHHHH-HHHHh-cCC--CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHH----HHHHHHhcc--ceEEechhhC
Confidence            568776654 33221 112  358999999999999999877   3555554333    455555543  2233334566


Q ss_pred             CCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCc
Q 027471          127 NTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDG  166 (223)
Q Consensus       127 ~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG  166 (223)
                      +.-+++||+|.|...+.+..+   .+.+|.||.|||||.+
T Consensus       105 p~~d~sfD~v~~~~~l~~~~d---~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        105 PFRDKSFDVVMSSFALHASDN---IEKVIAEFTRVSRKQV  141 (226)
T ss_pred             CCCCCCEEEEEecChhhccCC---HHHHHHHHHHHhcCce
Confidence            544499999999887765544   5699999999999954

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.67  E-value=6.4e-08  Score=80.69  Aligned_cols=129  Identities=15%  Similarity=0.254  Sum_probs=72.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccC------CCCC-cchhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF------NTYP-RTYDLLHA  138 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f------~tyP-rtyDllH~  138 (223)
                      -.+|||+|||+|+++..+.++     .|+.+.++|...        ..++--+..|..+..      ..++ .+||+|=|
T Consensus        33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~--------~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~  104 (188)
T TIGR00438        33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKP--------IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS  104 (188)
T ss_pred             CCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccccc--------CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence            358999999999998877554     377777776420        012211222322210      1144 67898777


Q ss_pred             hhhh--------cccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhCCCeeEEe-e----cCCCeeEEE
Q 027471          139 DHLF--------STIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHWDVRMI-Y----TNDNQGMLC  204 (223)
Q Consensus       139 ~~lf--------s~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l~W~~~~~-~----~~~~e~~L~  204 (223)
                      +...        .+....+.++.+|.++.|+|||||.+++. .....+.++-..++..-|.+... +    ..+.|++++
T Consensus       105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  184 (188)
T TIGR00438       105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIV  184 (188)
T ss_pred             CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEE
Confidence            4321        11112233568999999999999999994 22222222222222222444322 2    235799999


Q ss_pred             EEe
Q 027471          205 VHK  207 (223)
Q Consensus       205 ~~K  207 (223)
                      |..
T Consensus       185 ~~~  187 (188)
T TIGR00438       185 AKR  187 (188)
T ss_pred             Eec
Confidence            963

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.65  E-value=1.4e-08  Score=81.52  Aligned_cols=98  Identities=16%  Similarity=0.279  Sum_probs=67.6

Q ss_pred             ceEEEeeCCchHHHHHHhhC-----CCeEEEEecCCCCCCChhhHHhhCcc--cccccccccCCC----CCcchhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKD-----LKVWVMNVVPIESPDTLPIIYERGLF--GLYHDWCESFNT----YPRTYDLLHAD  139 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~-----~~V~vmnv~p~~~~~~l~~i~eRGLi--~~~~dwce~f~t----yPrtyDllH~~  139 (223)
                      --+|||+|||+|.++-.|++     ..|+.+.++|..-....+.+.+.|+.  -.++   +.+..    |+..||+|.+.
T Consensus         4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~---~d~~~l~~~~~~~~D~I~~~   80 (152)
T PF13847_consen    4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQ---GDIEDLPQELEEKFDIIISN   80 (152)
T ss_dssp             TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEE---SBTTCGCGCSSTTEEEEEEE
T ss_pred             CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEE---eehhccccccCCCeeEEEEc
Confidence            35799999999999999983     24566666554333233333345664  2332   23333    34789999999


Q ss_pred             hhhcccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      .++.+..+.   ..+|.++-|.|+|||.+++.+..
T Consensus        81 ~~l~~~~~~---~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   81 GVLHHFPDP---EKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             STGGGTSHH---HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CchhhccCH---HHHHHHHHHHcCCCcEEEEEECC
Confidence            888665543   48899999999999999999776

...

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.63  E-value=5.6e-08  Score=82.84  Aligned_cols=118  Identities=19%  Similarity=0.302  Sum_probs=75.5

Q ss_pred             eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCC-cchhhhhhhhhhcc
Q 027471           72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYP-RTYDLLHADHLFST  144 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyP-rtyDllH~~~lfs~  144 (223)
                      .+|||+|||.|.++.++++.    .|+.+.+.+.......+.+...|+..  +++  +..+..++ .+||+|.|.--|..
T Consensus        89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534        89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQ--SDWFEPLPGGKFDLIVSNPPYIP  166 (251)
T ss_pred             CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE--CchhccCcCCceeEEEECCCCCc
Confidence            47999999999999999875    45555554443322333333456532  222  12334455 88999987533321


Q ss_pred             ------ccccc-----------------chhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCee
Q 027471          145 ------IKKRC-----------------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       145 ------~~~rC-----------------~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~  191 (223)
                            ....+                 ....++.++-|+|+|||.+++.........+++++++..+..
T Consensus       167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~  236 (251)
T TIGR03534       167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD  236 (251)
T ss_pred             hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence                  11111                 023678899999999999999866666677888888877764

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.62  E-value=6.7e-08  Score=81.48  Aligned_cols=144  Identities=13%  Similarity=0.136  Sum_probs=85.1

Q ss_pred             ccchhH--hhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhC-----CCeEEEEecCCCCCCChhhHHhhC
Q 027471           42 PEDFTA--DYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKD-----LKVWVMNVVPIESPDTLPIIYERG  114 (223)
Q Consensus        42 ~~~f~~--D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~-----~~V~vmnv~p~~~~~~l~~i~eRG  114 (223)
                      .+.|..  +...+++.+...=+..+++..  -..|||+|||.|.++..++.     ..|+++.+.|.......+.+..-|
T Consensus        12 d~~~~~~~~~~~t~~~~r~~~l~~l~~~~--~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g   89 (198)
T PRK00377         12 DEEFERDEEIPMTKEEIRALALSKLRLRK--GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG   89 (198)
T ss_pred             hHHHccCCCCCCCHHHHHHHHHHHcCCCC--cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC
Confidence            344544  345777766652223344443  34799999999999876543     247777775553322222233335


Q ss_pred             cccccc----cccccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhCCC
Q 027471          115 LFGLYH----DWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHW  189 (223)
Q Consensus       115 Li~~~~----dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l~W  189 (223)
                      +..-+.    |..+.++..+..||.+.+..      ....+..++.++.|+|+|||.+++. -..+.+.++...++.+.+
T Consensus        90 ~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~  163 (198)
T PRK00377         90 VLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF  163 (198)
T ss_pred             CCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC
Confidence            322122    22222223346788877641      1234678999999999999999984 344556777777777777


Q ss_pred             eeEE
Q 027471          190 DVRM  193 (223)
Q Consensus       190 ~~~~  193 (223)
                      +..+
T Consensus       164 ~~~~  167 (198)
T PRK00377        164 NLEI  167 (198)
T ss_pred             CeEE
Confidence            6543

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.60  E-value=4.6e-08  Score=82.52  Aligned_cols=116  Identities=9%  Similarity=0.113  Sum_probs=71.3

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCC--CCC-cchhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFN--TYP-RTYDLLHADHL  141 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~--tyP-rtyDllH~~~l  141 (223)
                      -+.+||+|||.|.|+.+|+.+    .|+.+.+.+.........+...|+-.  +++.-...+.  .+| .++|.+++..-
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p   96 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP   96 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence            357999999999999999876    46666665443222333344555532  2221111111  155 68998876421


Q ss_pred             h-----cccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHh
Q 027471          142 F-----STIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKS  186 (223)
Q Consensus       142 f-----s~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~  186 (223)
                      .     .+.+.|+..+.+|.++-|+|||||.+++. |.......+...+..
T Consensus        97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~  147 (194)
T TIGR00091        97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE  147 (194)
T ss_pred             CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            1     12234566678999999999999999886 556555555544333

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.58  E-value=2.5e-08  Score=87.33  Aligned_cols=97  Identities=16%  Similarity=0.189  Sum_probs=62.3

Q ss_pred             ceEEEeeCCchHHHHHHhhC---C--CeEEEEecCCCCCCChhhHHhhCccc--cc-ccccccCCCCC-cchhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKD---L--KVWVMNVVPIESPDTLPIIYERGLFG--LY-HDWCESFNTYP-RTYDLLHADHL  141 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~---~--~V~vmnv~p~~~~~~l~~i~eRGLi~--~~-~dwce~f~tyP-rtyDllH~~~l  141 (223)
                      -.+|||+|||.|..+..+.+   .  .|+.+.+.|..-....+.+.+.|+..  .+ .|. +.++ ++ ++||+|++..+
T Consensus        78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~-~~~~~fD~Vi~~~v  155 (272)
T PRK11873         78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALP-VADNSVDVIISNCV  155 (272)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCC-CCCCceeEEEEcCc
Confidence            45999999999975543332   2  37777665543222222233345422  11 121 2223 44 79999999888


Q ss_pred             hcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +.+..+   ...++-|+-|+|||||.+++.|
T Consensus       156 ~~~~~d---~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        156 INLSPD---KERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             ccCCCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence            776554   3589999999999999999974

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.58  E-value=1.7e-08  Score=87.21  Aligned_cols=117  Identities=16%  Similarity=0.311  Sum_probs=81.0

Q ss_pred             eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhccccc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFSTIKK  147 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~~~~  147 (223)
                      -.+||+|||-|.-|-+|+++|  |+.+..++..-....+++.++||.  ++-+|..+.+  +|..||+|-|..+|.... 
T Consensus        32 g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~-  108 (192)
T PF03848_consen   32 GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQ-  108 (192)
T ss_dssp             SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS--
T ss_pred             CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccCC-
Confidence            479999999999999999996  555666655444456667778886  5555566666  558999999877776665 


Q ss_pred             ccchhHHHHhhhhcccCCcEEEEe---cc--------HHHH---HHHHHHHHhCCCeeEE
Q 027471          148 RCSLKAVVAEVDRILRPDGNLILR---DD--------AETI---VEVEDLVKSLHWDVRM  193 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii~---D~--------~~~~---~~i~~i~~~l~W~~~~  193 (223)
                      +-.++.++..|..-++|||++++-   +.        .+..   .++...+.  .|++..
T Consensus       109 ~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~  166 (192)
T PF03848_consen  109 RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILK  166 (192)
T ss_dssp             GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEE
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEE
Confidence            456889999999999999998873   11        1222   45666655  498854

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.56  E-value=4.4e-08  Score=87.58  Aligned_cols=103  Identities=16%  Similarity=0.190  Sum_probs=69.2

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHL  141 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~l  141 (223)
                      ....+.|||+|||+|.++.++.++    .|+++.. |.......+.+.+.|+-.-+.-.+..|-+  +|. +|++-++++
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-~D~v~~~~~  224 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFCRI  224 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC-CCEEEeEhh
Confidence            455679999999999999999876    3555654 22111133445566775433323344432  554 799877777


Q ss_pred             hcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      ++.+.+. ....+|.++-|.|||||.+++.|.
T Consensus       225 lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       225 LYSANEQ-LSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             hhcCChH-HHHHHHHHHHHhcCCCCEEEEEEe
Confidence            7776542 235789999999999999999853

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.56  E-value=9.2e-08  Score=86.90  Aligned_cols=118  Identities=14%  Similarity=0.142  Sum_probs=77.1

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCC----------CeEEEEecCCCCCCChhhHHhhCcccc-----cccccccCCCCC
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDL----------KVWVMNVVPIESPDTLPIIYERGLFGL-----YHDWCESFNTYP  130 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~----------~V~vmnv~p~~~~~~l~~i~eRGLi~~-----~~dwce~f~tyP  130 (223)
                      +..+..-++|||+||+|-.|=.+.+.          +|+|..+.|-+-.-..|...+|||-.-     +-.-.|.+| ||
T Consensus        96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fd  174 (296)
T KOG1540|consen   96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FD  174 (296)
T ss_pred             cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CC
Confidence            34555688999999999877666543          688888765543223344455666432     221246777 77


Q ss_pred             -cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHHH-HHHHHHHHhC
Q 027471          131 -RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETI-VEVEDLVKSL  187 (223)
Q Consensus       131 -rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~-~~i~~i~~~l  187 (223)
                       .+||+...+.=.-.+.+   ++..|.|+.|||+|||.|.+-+-.++- +.++.++..-
T Consensus       175 d~s~D~yTiafGIRN~th---~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~y  230 (296)
T KOG1540|consen  175 DDSFDAYTIAFGIRNVTH---IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQY  230 (296)
T ss_pred             CCcceeEEEecceecCCC---HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhh
Confidence             99999877632223333   679999999999999999876544432 4455554443

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.55  E-value=1.5e-07  Score=87.17  Aligned_cols=131  Identities=14%  Similarity=0.141  Sum_probs=82.4

Q ss_pred             EEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccccc-
Q 027471           73 NVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK-  147 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~-  147 (223)
                      .|||+|||+|.+++++.++    .|+.+.+.+..-....+.+.+.|+-+.+. ++..++..++.||+|-|.-.|+.... 
T Consensus       199 ~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~~~  277 (342)
T PRK09489        199 KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGIQT  277 (342)
T ss_pred             eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCccc
Confidence            5999999999999999876    35556664432222222233345443322 23345545689999999888864321 


Q ss_pred             -ccchhHHHHhhhhcccCCcEEEEecc--HHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEec
Q 027471          148 -RCSLKAVVAEVDRILRPDGNLILRDD--AETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT  208 (223)
Q Consensus       148 -rC~i~~vl~E~DRILRPgG~~ii~D~--~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K~  208 (223)
                       ....+.++.++-|.|+|||.++|-.+  ..+-..+++....    +......++-+++-|+|.
T Consensus       278 ~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~----~~~la~~~~f~v~~a~~~  337 (342)
T PRK09489        278 SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS----HEVLAQTGRFKVYRAIMT  337 (342)
T ss_pred             cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC----eEEEEeCCCEEEEEEEcc
Confidence             22356899999999999999988643  2333445544433    222224456778877763

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.53  E-value=1.3e-07  Score=89.31  Aligned_cols=97  Identities=14%  Similarity=0.309  Sum_probs=65.8

Q ss_pred             ceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhh-CcccccccccccCC----CCC-cchhhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFN----TYP-RTYDLLHADHLF  142 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f~----tyP-rtyDllH~~~lf  142 (223)
                      -.+|||+|||.|.++..|.++  .|+.+.+++.    .++.+.++ +...-+.-.|..+.    .+| .+||+|-|...+
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~----~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l  113 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKKAGQVIALDFIES----VIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL  113 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHH----HHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence            348999999999999999877  4555655443    33333221 22111111112221    245 899999999888


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      .+..+. .+..+|.|+.|+|+|||++++.|
T Consensus       114 ~~l~~~-~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        114 MYLSDK-EVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             HhCCHH-HHHHHHHHHHHhcCCCeEEEEEe
Confidence            877653 35689999999999999999974

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.51  E-value=7.9e-08  Score=84.88  Aligned_cols=91  Identities=13%  Similarity=0.190  Sum_probs=57.9

Q ss_pred             CceEEEeeCCchHHHHHHhhCC-------CeEEEEecCCCCCCChhhHHhhCc-cc-ccccccccCCCCCcchhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL-------KVWVMNVVPIESPDTLPIIYERGL-FG-LYHDWCESFNTYPRTYDLLHADH  140 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~-------~V~vmnv~p~~~~~~l~~i~eRGL-i~-~~~dwce~f~tyPrtyDllH~~~  140 (223)
                      .-.+|||+|||.|.+++.|.+.       .|+.+.+++    +.++.+.++.- +. ...|. +.++.-+.+||+|.+. 
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~----~~l~~A~~~~~~~~~~~~d~-~~lp~~~~sfD~I~~~-  158 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK----VAIKYAAKRYPQVTFCVASS-HRLPFADQSLDAIIRI-  158 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH----HHHHHHHHhCCCCeEEEeec-ccCCCcCCceeEEEEe-
Confidence            3467999999999999988754       134444433    35555555531 11 22221 2333223899999864 


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEeccHH
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE  175 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~  175 (223)
                       |+        +..+.|+.|+|+|||++++..+..
T Consensus       159 -~~--------~~~~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        159 -YA--------PCKAEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             -cC--------CCCHHHHHhhccCCCEEEEEeCCC
Confidence             22        235689999999999999985543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.50  E-value=1.2e-07  Score=71.56  Aligned_cols=100  Identities=17%  Similarity=0.161  Sum_probs=59.7

Q ss_pred             cCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--cc-ccccccCCCCCcchhhh
Q 027471           64 MGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LY-HDWCESFNTYPRTYDLL  136 (223)
Q Consensus        64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~-~dwce~f~tyPrtyDll  136 (223)
                      +.+..+  .+|||+|||.|.++.+++++    .|+.+.+++.......+.+.+.|+..  ++ .|.-+.+...+.+||.+
T Consensus        15 ~~~~~~--~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   92 (124)
T TIGR02469        15 LRLRPG--DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRV   92 (124)
T ss_pred             cCCCCC--CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEE
Confidence            344443  48999999999999999775    35555554432221222233344432  11 11101122233689988


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      -+....+      .++.++-++-|.|+|||++++.
T Consensus        93 ~~~~~~~------~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        93 FIGGSGG------LLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             EECCcch------hHHHHHHHHHHHcCCCCEEEEE
Confidence            6653221      2358999999999999999985

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK14967 putative methyltransferase; Provisional

Probab=98.50  E-value=5.5e-07  Score=77.26  Aligned_cols=153  Identities=18%  Similarity=0.225  Sum_probs=82.9

Q ss_pred             CCCcccccccCccCCCCccchhHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCC
Q 027471           25 KPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPI  101 (223)
Q Consensus        25 ~~p~rl~~~~g~~~~~~~~~f~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~  101 (223)
                      ++|--|...+|+|.      ...|++...+.+.     .+++..+  ..|||+|||.|.++..+++.   .|+.+.+.|.
T Consensus         4 ~~~~~~~~~~g~~~------p~~ds~~l~~~l~-----~~~~~~~--~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~   70 (223)
T PRK14967          4 TPPDALLRAPGVYR------PQEDTQLLADALA-----AEGLGPG--RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRR   70 (223)
T ss_pred             CCCceeecCCCCcC------CCCcHHHHHHHHH-----hcccCCC--CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHH
Confidence            44544544455442      2346655433333     2344443  47999999999999988775   3555666553


Q ss_pred             CCCCChhhHHhhCcccccccccccCCC-CC-cchhhhhhhhhhccc------------------ccccchhHHHHhhhhc
Q 027471          102 ESPDTLPIIYERGLFGLYHDWCESFNT-YP-RTYDLLHADHLFSTI------------------KKRCSLKAVVAEVDRI  161 (223)
Q Consensus       102 ~~~~~l~~i~eRGLi~~~~dwce~f~t-yP-rtyDllH~~~lfs~~------------------~~rC~i~~vl~E~DRI  161 (223)
                      ......+.+...|+--.++  +..+.. .+ ..||+|.|+--|...                  ...+.++.++.++-|+
T Consensus        71 ~l~~a~~n~~~~~~~~~~~--~~d~~~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  148 (223)
T PRK14967         71 AVRSARLNALLAGVDVDVR--RGDWARAVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPAL  148 (223)
T ss_pred             HHHHHHHHHHHhCCeeEEE--ECchhhhccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHh
Confidence            2211111222234421111  122222 34 789999886333211                  0112356788899999


Q ss_pred             ccCCcEEEEec-cHHHHHHHHHHHHhCCCeeE
Q 027471          162 LRPDGNLILRD-DAETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       162 LRPgG~~ii~D-~~~~~~~i~~i~~~l~W~~~  192 (223)
                      |+|||.+++-. ......++.+.+++-.++..
T Consensus       149 Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~  180 (223)
T PRK14967        149 LAPGGSLLLVQSELSGVERTLTRLSEAGLDAE  180 (223)
T ss_pred             cCCCcEEEEEEecccCHHHHHHHHHHCCCCeE
Confidence            99999999842 22233344455555555543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.47  E-value=1.8e-07  Score=77.71  Aligned_cols=93  Identities=16%  Similarity=0.312  Sum_probs=62.2

Q ss_pred             CceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCc----ccccccccccCCC--CC-cchhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGL----FGLYHDWCESFNT--YP-RTYDLLH  137 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGL----i~~~~dwce~f~t--yP-rtyDllH  137 (223)
                      .-.+|||+|||.|.++.++.+.     .++++.+.|.    .++.+.++.-    +-.++   ..+..  ++ .+||+++
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~----~~~~~~~~~~~~~~i~~~~---~d~~~~~~~~~~~D~i~  111 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE----MLEVAKKKSELPLNIEFIQ---ADAEALPFEDNSFDAVT  111 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH----HHHHHHHHhccCCCceEEe---cchhcCCCCCCcEEEEE
Confidence            3468999999999999988765     3444554332    3334444321    11222   22222  33 7899999


Q ss_pred             hhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          138 ADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       138 ~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +...+++..+   ...++.++.++|+|||.+++.+
T Consensus       112 ~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       112 IAFGLRNVTD---IQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             EeeeeCCccc---HHHHHHHHHHHcCCCcEEEEEE
Confidence            9877765443   5689999999999999999864

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK04266 fibrillarin; Provisional

Probab=98.47  E-value=6.9e-07  Score=78.30  Aligned_cols=102  Identities=17%  Similarity=0.268  Sum_probs=60.4

Q ss_pred             ccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh-CcccccccccccCC--CCCcchhh
Q 027471           63 GMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFN--TYPRTYDL  135 (223)
Q Consensus        63 ~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f~--tyPrtyDl  135 (223)
                      .++++.+  -.|||+|||+|+++..|.+.    .|+.+.+.|..-....+.+.++ ++..+..|-.+...  ..+.+||+
T Consensus        67 ~l~i~~g--~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~  144 (226)
T PRK04266         67 NFPIKKG--SKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV  144 (226)
T ss_pred             hCCCCCC--CEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence            3566665  47999999999999999876    4777777654222222233333 22323334222111  13466888


Q ss_pred             hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      +-+.     ..+.-....+|.|+.|+|||||.++++
T Consensus       145 i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        145 IYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             EEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            5432     111001134688999999999999993

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.47  E-value=3.8e-07  Score=76.53  Aligned_cols=127  Identities=13%  Similarity=0.091  Sum_probs=69.8

Q ss_pred             HHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccc-cccccC
Q 027471           54 NVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYH-DWCESF  126 (223)
Q Consensus        54 ~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~-dwce~f  126 (223)
                      ..++..-...+.+..  -.+|||+|||+|.++..++..    .|+.+...|.......+.+.+.|+..  +++ |-.+.+
T Consensus        26 ~~v~~~l~~~l~~~~--~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~  103 (196)
T PRK07402         26 REVRLLLISQLRLEP--DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECL  103 (196)
T ss_pred             HHHHHHHHHhcCCCC--CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHH
Confidence            344432234444444  357999999999998877532    46667665543321122222345422  221 111111


Q ss_pred             CCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH-HHHHHHHHHHHhCCC
Q 027471          127 NTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHW  189 (223)
Q Consensus       127 ~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~-~~~~~i~~i~~~l~W  189 (223)
                      ......+|.++..       ....++.++.++.|+|+|||.+++.... +....+.+.++.+..
T Consensus       104 ~~~~~~~d~v~~~-------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~  160 (196)
T PRK07402        104 AQLAPAPDRVCIE-------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA  160 (196)
T ss_pred             hhCCCCCCEEEEE-------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence            1112234544332       1234679999999999999999987543 344556666665543

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.47  E-value=2e-07  Score=86.71  Aligned_cols=115  Identities=12%  Similarity=0.039  Sum_probs=75.0

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhC---cccccccccccCCCCCcchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERG---LFGLYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRG---Li~~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      -.+|||+|||+|.++..+.+.    .|+.+.+++.    .++.+.++.   -+.+++.-.+.++.-+.+||+|-+.+.+.
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~----mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~  189 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH----QLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIE  189 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHH----HHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhh
Confidence            357999999999988877653    4666665443    333333321   12223322223333348999999988887


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEeccHH-----------------HHHHHHHHHHhCCCeeE
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDAE-----------------TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~-----------------~~~~i~~i~~~l~W~~~  192 (223)
                      ++.+.   +.+|.|+.|+|||||.+++.+...                 ..+++.++++...++..
T Consensus       190 ~~~d~---~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V  252 (340)
T PLN02490        190 YWPDP---QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV  252 (340)
T ss_pred             hCCCH---HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence            77654   579999999999999998864321                 13556667777777654

>PRK06922 hypothetical protein; Provisional

Probab=98.47  E-value=6.9e-08  Score=96.59  Aligned_cols=103  Identities=12%  Similarity=0.223  Sum_probs=66.7

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc-ccccccccccCCC-CC-cchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNT-YP-RTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~t-yP-rtyDllH~~~lfs  143 (223)
                      -.+|||+|||+|.++.+|+.+    .|+.+.+++..-....+.....|. +.+++.-+..++. ++ ++||++.++.+++
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH  498 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH  498 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence            468999999999998888653    577777766432211111111222 1122222334553 54 8999999887776


Q ss_pred             ccc----------cccchhHHHHhhhhcccCCcEEEEecc
Q 027471          144 TIK----------KRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       144 ~~~----------~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      ++-          +...+..+|.|+.|+|||||.+++.|.
T Consensus       499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            431          123456999999999999999999864

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.46  E-value=9.4e-08  Score=80.49  Aligned_cols=100  Identities=14%  Similarity=0.154  Sum_probs=62.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc--ccccccccccCCC-CCcchhhhhhhhhhccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL--FGLYHDWCESFNT-YPRTYDLLHADHLFSTI  145 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL--i~~~~dwce~f~t-yPrtyDllH~~~lfs~~  145 (223)
                      -.+|||+|||.|.++..+.+.+  |+...+.+.......+...+-|+  +.....-.+.++. .+.+||+|.+.+++.+.
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~  125 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV  125 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence            4589999999999999887764  33333322211111111112233  2222211112222 35799999999888776


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      .+   ...+|.++.|+|+|||.+++++.
T Consensus       126 ~~---~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       126 PD---PQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             CC---HHHHHHHHHHhcCCCcEEEEEec
Confidence            54   35899999999999999999753

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.46  E-value=6.2e-07  Score=74.09  Aligned_cols=140  Identities=16%  Similarity=0.213  Sum_probs=77.4

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCCC-----eEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCCcchhhhh
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDLK-----VWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYPRTYDLLH  137 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~~-----V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyPrtyDllH  137 (223)
                      ++.+...+|||+||+.|||..++.++.     |+.+.+.|.........+  +|=+-   ......+.++.-.+.||+|-
T Consensus        19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~   96 (181)
T PF01728_consen   19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL   96 (181)
T ss_dssp             S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred             CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence            567788999999999999999999886     556777666332222222  22110   11111112221126899999


Q ss_pred             hhhhhcccccc---c--chh---HHHHhhhhcccCCcEEEEe-----ccHHHHHHHHHHHHhCCCeeEEe-ecCCCeeEE
Q 027471          138 ADHLFSTIKKR---C--SLK---AVVAEVDRILRPDGNLILR-----DDAETIVEVEDLVKSLHWDVRMI-YTNDNQGML  203 (223)
Q Consensus       138 ~~~lfs~~~~r---C--~i~---~vl~E~DRILRPgG~~ii~-----D~~~~~~~i~~i~~~l~W~~~~~-~~~~~e~~L  203 (223)
                      |+..+....++   .  .+.   ..|.=+-..|||||.+|+-     +..+.+..++...+.+++-.-.. ..++.|.+|
T Consensus        97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Yl  176 (181)
T PF01728_consen   97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSESSEEYL  176 (181)
T ss_dssp             E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTCBEEEE
T ss_pred             cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCccEEEE
Confidence            98755432210   1  111   2223334679999988874     33456677777777766554322 235689999


Q ss_pred             EEEe
Q 027471          204 CVHK  207 (223)
Q Consensus       204 ~~~K  207 (223)
                      +|++
T Consensus       177 v~~~  180 (181)
T PF01728_consen  177 VCRG  180 (181)
T ss_dssp             ESEE
T ss_pred             EEcC
Confidence            9975

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PTZ00146 fibrillarin; Provisional

Probab=98.45  E-value=9.4e-07  Score=80.99  Aligned_cols=103  Identities=17%  Similarity=0.207  Sum_probs=68.0

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh-CcccccccccccCC--CCCcch
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFN--TYPRTY  133 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f~--tyPrty  133 (223)
                      +.|.|+.+  .+|||+|||+|+|+..|.+.     .|.++.++|....+.+.++.+| ++..+..|-+....  ....++
T Consensus       126 ~~l~IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~v  203 (293)
T PTZ00146        126 ANIPIKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMV  203 (293)
T ss_pred             ceeccCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCC
Confidence            33446666  48999999999999999876     3788887654433445555443 56666666443211  122678


Q ss_pred             hhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       134 DllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      |+|-++...   .+  ....++.|+.|+|||||+|+|.
T Consensus       204 DvV~~Dva~---pd--q~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        204 DVIFADVAQ---PD--QARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CEEEEeCCC---cc--hHHHHHHHHHHhccCCCEEEEE
Confidence            988665321   11  1235677999999999999995

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.43  E-value=1.2e-07  Score=80.87  Aligned_cols=98  Identities=15%  Similarity=0.225  Sum_probs=63.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhh----Cccccc--ccccccCCCCCcchhhhhhhhhhcc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLFGLY--HDWCESFNTYPRTYDLLHADHLFST  144 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eR----GLi~~~--~dwce~f~tyPrtyDllH~~~lfs~  144 (223)
                      -..|||+|||.|.++..|.+.+.-+.-+-+  ++..+..+.++    |+...+  .++.+.....+.+||+|.|..+|.+
T Consensus        49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~--s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~  126 (233)
T PRK05134         49 GKRVLDVGCGGGILSESMARLGADVTGIDA--SEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH  126 (233)
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCCeEEEEcC--CHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence            446999999999999999887543322211  11223333222    332212  2222111123488999999988887


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      ..+.   ..+|.++.|+|+|||.+++.+.
T Consensus       127 ~~~~---~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        127 VPDP---ASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             cCCH---HHHHHHHHHHcCCCcEEEEEec
Confidence            7654   4889999999999999999854

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.43  E-value=1.4e-07  Score=86.11  Aligned_cols=103  Identities=20%  Similarity=0.349  Sum_probs=80.0

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC-CeEEEEe--cCCCCCCChhhHHhhCccc----ccccccccCCCCCcchh
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNV--VPIESPDTLPIIYERGLFG----LYHDWCESFNTYPRTYD  134 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv--~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyPrtyD  134 (223)
                      +.|++++|  -+|||+|||.|+.+.+++++ +|.|+-+  ++.+-....+.+.++||..    ..+||    .+++..||
T Consensus        66 ~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~----rd~~e~fD  139 (283)
T COG2230          66 EKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY----RDFEEPFD  139 (283)
T ss_pred             HhcCCCCC--CEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc----cccccccc
Confidence            45566665  57999999999999999888 7777554  5544444667799999974    34543    44555599


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      =|-+-+.|.+... -..++++.=++++|+|||.+++-
T Consensus       140 rIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh  175 (283)
T COG2230         140 RIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH  175 (283)
T ss_pred             eeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence            9999999998875 35779999999999999999885

>PRK14968 putative methyltransferase; Provisional

Probab=98.42  E-value=6.5e-07  Score=72.79  Aligned_cols=119  Identities=16%  Similarity=0.193  Sum_probs=72.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc-----ccccccccccCCCCC-cchhhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL-----FGLYHDWCESFNTYP-RTYDLLHADHLF  142 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL-----i~~~~dwce~f~tyP-rtyDllH~~~lf  142 (223)
                      -..|||+|||.|.++..|++++  |+.+.++|.......+.+...|+     .-..+|+.+   .++ ..||+|=+..-|
T Consensus        24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~d~vi~n~p~  100 (188)
T PRK14968         24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---PFRGDKFDVILFNPPY  100 (188)
T ss_pred             CCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc---cccccCceEEEECCCc
Confidence            4579999999999999998774  44455544322212222222233     224444433   334 578987544332


Q ss_pred             ccc------------------ccccchhHHHHhhhhcccCCcEEEEecc-HHHHHHHHHHHHhCCCeeE
Q 027471          143 STI------------------KKRCSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       143 s~~------------------~~rC~i~~vl~E~DRILRPgG~~ii~D~-~~~~~~i~~i~~~l~W~~~  192 (223)
                      ...                  .....++.++.++.|+|+|||.+++-.. ......+.+.+....++..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~  169 (188)
T PRK14968        101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAE  169 (188)
T ss_pred             CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeee
Confidence            210                  0123356899999999999999877532 2234567777887788754

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.41  E-value=2.5e-07  Score=78.85  Aligned_cols=100  Identities=17%  Similarity=0.202  Sum_probs=62.4

Q ss_pred             hhccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---ccc-cccccCCCCCc
Q 027471           61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---LYH-DWCESFNTYPR  131 (223)
Q Consensus        61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~-dwce~f~tyPr  131 (223)
                      ++.+.+..+  .+|||+|||+|.+++.|.+.     .|+.+.+.|.......+.+...|+..   +++ |-.+.++ -..
T Consensus        65 ~~~l~~~~~--~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~  141 (205)
T PRK13944         65 CELIEPRPG--MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHA  141 (205)
T ss_pred             HHhcCCCCC--CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCC
Confidence            344554443  57999999999999887643     46777776554332333344556532   232 3222221 127


Q ss_pred             chhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          132 TYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       132 tyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +||.|.+...+         ..+.-|+-|+|+|||.+++..
T Consensus       142 ~fD~Ii~~~~~---------~~~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        142 PFDAIIVTAAA---------STIPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             CccEEEEccCc---------chhhHHHHHhcCcCcEEEEEE
Confidence            89999987443         234457889999999999853

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.39  E-value=9.2e-07  Score=76.83  Aligned_cols=133  Identities=19%  Similarity=0.254  Sum_probs=78.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCCCC-cchhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTYP-RTYDLLHADHL  141 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyP-rtyDllH~~~l  141 (223)
                      -.+|||+|||.|.++.+|++.    .|+.+.+++.... ..+.+.+.+...    ...|+   +..++ .+||+|-|.--
T Consensus       109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~-~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~npP  184 (275)
T PRK09328        109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALA-VARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNPP  184 (275)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECCC
Confidence            347999999999999999765    3555555443211 111122212211    22232   33333 78999876422


Q ss_pred             hccc------c-----------------cccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE-E-eec
Q 027471          142 FSTI------K-----------------KRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR-M-IYT  196 (223)
Q Consensus       142 fs~~------~-----------------~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~-~-~~~  196 (223)
                      +...      .                 .--.+..++.++.++|+|||++++.-....-..++.+++...+... . .|-
T Consensus       185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~  264 (275)
T PRK09328        185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDL  264 (275)
T ss_pred             cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCC
Confidence            2110      0                 0011347888899999999999997444445567777776666522 2 344


Q ss_pred             CCCeeEEEEEe
Q 027471          197 NDNQGMLCVHK  207 (223)
Q Consensus       197 ~~~e~~L~~~K  207 (223)
                      .+.+++++++|
T Consensus       265 ~~~~r~~~~~~  275 (275)
T PRK09328        265 AGRDRVVLGRR  275 (275)
T ss_pred             CCCceEEEEEC
Confidence            57888888865

>PRK06202 hypothetical protein; Provisional

Probab=98.39  E-value=1.2e-07  Score=81.27  Aligned_cols=97  Identities=12%  Similarity=0.210  Sum_probs=64.6

Q ss_pred             CCceEEEeeCCchHHHHHHhhC----C----CeEEEEecCCCCCCChhhHHhh----CcccccccccccCCCCCcchhhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKD----L----KVWVMNVVPIESPDTLPIIYER----GLFGLYHDWCESFNTYPRTYDLL  136 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~----~----~V~vmnv~p~~~~~~l~~i~eR----GLi~~~~dwce~f~tyPrtyDll  136 (223)
                      ..-.+|||+|||+|.++..|.+    .    .|+.+.++|.    .++.+.++    ++. ....-++.++.-+.+||+|
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~----~l~~a~~~~~~~~~~-~~~~~~~~l~~~~~~fD~V  133 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR----AVAFARANPRRPGVT-FRQAVSDELVAEGERFDVV  133 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH----HHHHHHhccccCCCe-EEEEecccccccCCCccEE
Confidence            4557899999999999888763    2    3555555443    44444443    221 1111134555545899999


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      -|..+|++..+. .+..+|.||-|++|  |.+++.|.
T Consensus       134 ~~~~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~dl  167 (232)
T PRK06202        134 TSNHFLHHLDDA-EVVRLLADSAALAR--RLVLHNDL  167 (232)
T ss_pred             EECCeeecCChH-HHHHHHHHHHHhcC--eeEEEecc
Confidence            999999888753 34589999999999  56666554

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.37  E-value=2.2e-07  Score=79.79  Aligned_cols=97  Identities=13%  Similarity=0.169  Sum_probs=60.0

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCC--cc
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYP--RT  132 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyP--rt  132 (223)
                      +.+.+..+  .+|||+|||+|.+++.|.+.     .|+.+.+.|.......+.+...|+-.  +.+  +..+..++  ..
T Consensus        70 ~~l~~~~g--~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~--gd~~~~~~~~~~  145 (212)
T PRK13942         70 ELLDLKEG--MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV--GDGTLGYEENAP  145 (212)
T ss_pred             HHcCCCCc--CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE--CCcccCCCcCCC
Confidence            34444443  58999999999999877653     46666665543322222333335422  222  22333343  78


Q ss_pred             hhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          133 YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       133 yDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ||.|.+...         .+.+..++-+.|||||.+++-
T Consensus       146 fD~I~~~~~---------~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        146 YDRIYVTAA---------GPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             cCEEEECCC---------cccchHHHHHhhCCCcEEEEE
Confidence            999998733         334455667789999999985

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.37  E-value=3.1e-07  Score=78.36  Aligned_cols=100  Identities=14%  Similarity=0.122  Sum_probs=63.1

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCC--C---eEEEEecCCCCCCChhhHHhhCcccccccccccCCC-CC--c
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL--K---VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT-YP--R  131 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~---V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t-yP--r  131 (223)
                      .++.+.+..+  ..|||+|||+|.+++.|.+.  .   |+.+.+.|.......+.+.+.|+-. ++-.|..... ++  .
T Consensus        69 ~~~~l~~~~~--~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d~~~~~~~~~  145 (215)
T TIGR00080        69 MTELLELKPG--MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGDGTQGWEPLA  145 (215)
T ss_pred             HHHHhCCCCc--CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECCcccCCcccC
Confidence            3345555444  48999999999999998765  2   6777666554333334444556522 1111222222 22  6


Q ss_pred             chhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          132 TYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       132 tyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      .||+|+++..         ...+..++-|.|+|||.+++.
T Consensus       146 ~fD~Ii~~~~---------~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       146 PYDRIYVTAA---------GPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCCEEEEcCC---------cccccHHHHHhcCcCcEEEEE
Confidence            8999988632         344556778899999999985

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.36  E-value=9.4e-07  Score=75.07  Aligned_cols=115  Identities=8%  Similarity=0.075  Sum_probs=72.3

Q ss_pred             hhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhh----Cccccccccc
Q 027471           50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYER----GLFGLYHDWC  123 (223)
Q Consensus        50 ~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eR----GLi~~~~dwc  123 (223)
                      +.|.+.+-+ |+..   ....-.+|||+|||.|.++.+|++++  |+.+.++|.    .+..+.++    ++..-+.=.+
T Consensus        39 ~~~~~~~~~-~l~~---~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~----~i~~a~~~~~~~~~~~~i~~~~  110 (219)
T TIGR02021        39 AAMRRKLLD-WLPK---DPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQ----MVQMARNRAQGRDVAGNVEFEV  110 (219)
T ss_pred             HHHHHHHHH-HHhc---CCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCCCceEEEE
Confidence            344554544 4442   12235789999999999999998875  444544433    34333333    2211111112


Q ss_pred             ccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          124 ESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       124 e~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      ..+...+.+||+|-+..++.+... ..+..++.++.|+++||+++.+...
T Consensus       111 ~d~~~~~~~fD~ii~~~~l~~~~~-~~~~~~l~~i~~~~~~~~~i~~~~~  159 (219)
T TIGR02021       111 NDLLSLCGEFDIVVCMDVLIHYPA-SDMAKALGHLASLTKERVIFTFAPK  159 (219)
T ss_pred             CChhhCCCCcCEEEEhhHHHhCCH-HHHHHHHHHHHHHhCCCEEEEECCC
Confidence            344445589999988877766643 3467899999999999988887644

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.35  E-value=8.5e-07  Score=79.69  Aligned_cols=123  Identities=19%  Similarity=0.248  Sum_probs=73.7

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCC-cchhhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYP-RTYDLLHADHLF  142 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyP-rtyDllH~~~lf  142 (223)
                      -.+|||+|||+|.++.+|+++    .|+.+.+++....-..+-+...|+..   .++.  ..+...| .+||+|-|.-=+
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~--D~~~~~~~~~fD~Iv~NPPy  199 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS--DLFAALPGRKYDLIVSNPPY  199 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC--chhhccCCCCccEEEECCCC
Confidence            357999999999999999865    46666665443322233333446532   2221  1233345 589998774111


Q ss_pred             -------------cccc--------ccc-chhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEeec
Q 027471          143 -------------STIK--------KRC-SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYT  196 (223)
Q Consensus       143 -------------s~~~--------~rC-~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~~  196 (223)
                                   .+..        +.. ....++.++-+.|+|||.+++.-..+. ..+++++....|.....++
T Consensus       200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~  274 (284)
T TIGR03533       200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN  274 (284)
T ss_pred             CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence                         0000        111 134789999999999999998754433 6788887766554433333

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.33  E-value=8.3e-08  Score=72.09  Aligned_cols=88  Identities=20%  Similarity=0.309  Sum_probs=57.1

Q ss_pred             EEeeCCchHHHHHHhhCC-------CeEEEEecCCCCCCChhhHHhhC----cc-cccccccccCCCCCcchhhhhhhhh
Q 027471           74 VMDMRAVYGGFAAALKDL-------KVWVMNVVPIESPDTLPIIYERG----LF-GLYHDWCESFNTYPRTYDLLHADHL  141 (223)
Q Consensus        74 vLDmgaG~GgFAA~L~~~-------~V~vmnv~p~~~~~~l~~i~eRG----Li-~~~~dwce~f~tyPrtyDllH~~~l  141 (223)
                      |||+|||.|....++.+.       .++.+.+++.    .+..+.++.    +- -.++.-++.++...++||+|-|.+.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~----~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPE----MLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HH----HHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHH----HHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCC
Confidence            799999999999988754       4555666544    455555554    31 1333222233334479999999655


Q ss_pred             -hcccccccchhHHHHhhhhcccCCc
Q 027471          142 -FSTIKKRCSLKAVVAEVDRILRPDG  166 (223)
Q Consensus       142 -fs~~~~rC~i~~vl~E~DRILRPgG  166 (223)
                       |.+.. .-.++.++-++-|+|||||
T Consensus        77 ~~~~~~-~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHHLS-PEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGGSS-HHHHHHHHHHHHHTEEEEE
T ss_pred             ccCCCC-HHHHHHHHHHHHHHhCCCC
Confidence             77644 3457899999999999998

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.33  E-value=8.1e-07  Score=83.68  Aligned_cols=129  Identities=14%  Similarity=0.161  Sum_probs=79.9

Q ss_pred             eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh-Cc-----ccccccccccCCCCC-cchhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER-GL-----FGLYHDWCESFNTYP-RTYDLLHADH  140 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR-GL-----i~~~~dwce~f~tyP-rtyDllH~~~  140 (223)
                      ..|||+|||+|-.+.+|.++    .|+.+.+++.... ..+.+.++ +.     +.++.  +..++..+ .+||+|-|.-
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~-~A~~N~~~n~~~~~~~v~~~~--~D~l~~~~~~~fDlIlsNP  306 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVA-SSRLNVETNMPEALDRCEFMI--NNALSGVEPFRFNAVLCNP  306 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHH-HHHHHHHHcCcccCceEEEEE--ccccccCCCCCEEEEEECc
Confidence            48999999999999998776    4666666543221 11111111 11     22222  23455554 6899999977


Q ss_pred             hhcccc--cccchhHHHHhhhhcccCCcEEEEec--cHHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471          141 LFSTIK--KRCSLKAVVAEVDRILRPDGNLILRD--DAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK  207 (223)
Q Consensus       141 lfs~~~--~rC~i~~vl~E~DRILRPgG~~ii~D--~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K  207 (223)
                      -|+...  ..-....++.++-|+|+|||.+++--  ..++..++++++.    ++....++.+=+|+-++|
T Consensus       307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~~kf~vl~a~k  373 (378)
T PRK15001        307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATNNKFVVLKAVK  373 (378)
T ss_pred             CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccCCCEEEEEEEe
Confidence            775322  11123578999999999999999873  2334455655443    344444555677777777

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.32  E-value=5.3e-07  Score=76.06  Aligned_cols=101  Identities=12%  Similarity=0.086  Sum_probs=63.8

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcccccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKR  148 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~r  148 (223)
                      -.+|||+|||.|.++.+|.+.+  |+.+.+++.......+...+.|+...++--+..++..+.+||+|.|..+|.++.+ 
T Consensus        64 ~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~~~-  142 (230)
T PRK07580         64 GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHYPQ-  142 (230)
T ss_pred             CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcCCH-
Confidence            4689999999999999998774  5555554432221222222334311111112345555689999999988877653 


Q ss_pred             cchhHHHHhhhhcccCCcEEEEec
Q 027471          149 CSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       149 C~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      ..+..++.++-|++++|+.+.+..
T Consensus       143 ~~~~~~l~~l~~~~~~~~~i~~~~  166 (230)
T PRK07580        143 EDAARMLAHLASLTRGSLIFTFAP  166 (230)
T ss_pred             HHHHHHHHHHHhhcCCeEEEEECC
Confidence            246788899999887666555443

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.32  E-value=3.6e-07  Score=76.66  Aligned_cols=97  Identities=19%  Similarity=0.327  Sum_probs=59.9

Q ss_pred             eEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCc---ccccccccccCCCCC-cchhhhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGL---FGLYHDWCESFNTYP-RTYDLLHADHLF  142 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGL---i~~~~dwce~f~tyP-rtyDllH~~~lf  142 (223)
                      ..|||+|||.|.++..+.+.     .|+++.+.+.......+....+++   +-.++.=.+.++ ++ .+||+|.+...+
T Consensus        53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~~l  131 (239)
T PRK00216         53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAFGL  131 (239)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEeccc
Confidence            57999999999998888654     355555544322111111112222   222221011122 33 789999988766


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      .+..   ....+|.++.++|+|||.+++.+
T Consensus       132 ~~~~---~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        132 RNVP---DIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             ccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence            5443   45789999999999999998863

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.29  E-value=8.8e-07  Score=83.97  Aligned_cols=119  Identities=15%  Similarity=0.108  Sum_probs=76.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--cc-ccccccCCCCC-cchhhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LY-HDWCESFNTYP-RTYDLLHADHLF  142 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~-~dwce~f~tyP-rtyDllH~~~lf  142 (223)
                      -..+||+|||.|.|..+|+.+    .+..+-+.+.........+.++|+-.  ++ .|.-+-+..+| .++|.|++.  |
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln--F  200 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH--F  200 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe--C
Confidence            357999999999999999865    56667665544444556667778743  22 22111123456 899999875  3


Q ss_pred             c-ccc---c-ccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHH-hCCCee
Q 027471          143 S-TIK---K-RCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVK-SLHWDV  191 (223)
Q Consensus       143 s-~~~---~-rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~-~l~W~~  191 (223)
                      . -|.   + |=..+.+|.|+-|+|+|||.+.++ |..+....+.+.+. .-+++.
T Consensus       201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~  256 (390)
T PRK14121        201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI  256 (390)
T ss_pred             CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence            2 121   1 112258999999999999999885 66666555444433 334443

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.28  E-value=2.2e-06  Score=76.47  Aligned_cols=133  Identities=14%  Similarity=0.157  Sum_probs=82.1

Q ss_pred             eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcc---c-ccccccccCCCCC-cchhhhhhhh--
Q 027471           72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLF---G-LYHDWCESFNTYP-RTYDLLHADH--  140 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi---~-~~~dwce~f~tyP-rtyDllH~~~--  140 (223)
                      .+|||+|||+|.++.+|++.    .|+.+.+++....-..+-+...|+-   - ...||++.+   + ..||+|-|.-  
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~---~~~~fDlIvsNPPy  192 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL---AGQKIDIIVSNPPY  192 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC---cCCCccEEEECCCC
Confidence            47999999999999999864    4666666544322112222223442   2 234555443   3 3788876631  


Q ss_pred             -----------hhccccccc---------chhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHH-hCCCee-E-EeecC
Q 027471          141 -----------LFSTIKKRC---------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVK-SLHWDV-R-MIYTN  197 (223)
Q Consensus       141 -----------lfs~~~~rC---------~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~-~l~W~~-~-~~~~~  197 (223)
                                 ++.+....+         .+..++.++-+.|+|||++++--.......+..++. ...|.. . ..|-.
T Consensus       193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~~  272 (284)
T TIGR00536       193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDLN  272 (284)
T ss_pred             CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCCC
Confidence                       111111111         244789999999999999999766666667777765 456643 2 33456


Q ss_pred             CCeeEEEEEe
Q 027471          198 DNQGMLCVHK  207 (223)
Q Consensus       198 ~~e~~L~~~K  207 (223)
                      +.++++++++
T Consensus       273 g~~R~~~~~~  282 (284)
T TIGR00536       273 GKERVVLGFY  282 (284)
T ss_pred             CCceEEEEEe
Confidence            7889998875

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.27  E-value=1.5e-06  Score=84.24  Aligned_cols=134  Identities=12%  Similarity=0.219  Sum_probs=83.8

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc---cc-ccccccCCCCC-cchhhhhhhh-
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG---LY-HDWCESFNTYP-RTYDLLHADH-  140 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~-~dwce~f~tyP-rtyDllH~~~-  140 (223)
                      -.+|||+|||+|.++.+|+..    .|+.+.++|....-..+-+...|+-.   ++ .|+   +...+ +.||+|-|.- 
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~---~~~~~~~~fDlIvsNPP  215 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW---FENIEKQKFDFIVSNPP  215 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch---hhhCcCCCccEEEECCC
Confidence            357999999999999887643    57777776543222222223335532   22 332   33344 6899988732 


Q ss_pred             ----------------------hhcccccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE--Eeec
Q 027471          141 ----------------------LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR--MIYT  196 (223)
Q Consensus       141 ----------------------lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~--~~~~  196 (223)
                                            +|........+..++.++.++|+|||.+++.-....-..+..++....|...  ..|-
T Consensus       216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~D~  295 (506)
T PRK01544        216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKDL  295 (506)
T ss_pred             CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEecC
Confidence                                  1111111122346888999999999999997555556778888777777643  3455


Q ss_pred             CCCeeEEEEEe
Q 027471          197 NDNQGMLCVHK  207 (223)
Q Consensus       197 ~~~e~~L~~~K  207 (223)
                      .+.++++++.-
T Consensus       296 ~g~~R~v~~~~  306 (506)
T PRK01544        296 QGHSRVILISP  306 (506)
T ss_pred             CCCceEEEecc
Confidence            66788887753

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.27  E-value=2.2e-06  Score=70.94  Aligned_cols=139  Identities=19%  Similarity=0.237  Sum_probs=81.0

Q ss_pred             ccCccCCCCccchhHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC--C--eEEEEecCCCCCCChh
Q 027471           33 EAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL--K--VWVMNVVPIESPDTLP  108 (223)
Q Consensus        33 ~~g~~~~~~~~~f~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~--V~vmnv~p~~~~~~l~  108 (223)
                      .+|++   +...+..++..-.+.+.. .         .-.+|||+|||+|-.+..++.+  .  |+...+.|.... ..+
T Consensus         7 ~~gvF---s~~~~d~~t~lL~~~l~~-~---------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~-~a~   72 (170)
T PF05175_consen    7 HPGVF---SPPRLDAGTRLLLDNLPK-H---------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALE-LAK   72 (170)
T ss_dssp             ETTST---TTTSHHHHHHHHHHHHHH-H---------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHH-HHH
T ss_pred             CCCee---CCCCCCHHHHHHHHHHhh-c---------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHH-HHH
Confidence            35553   344456777766666654 2         3456999999999999988876  3  555555433222 222


Q ss_pred             hHH-hhCcccccccccccCCCCC-cchhhhhhhhhhcccc--cccchhHHHHhhhhcccCCcEEEE--eccHHHHHHHHH
Q 027471          109 IIY-ERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIK--KRCSLKAVVAEVDRILRPDGNLIL--RDDAETIVEVED  182 (223)
Q Consensus       109 ~i~-eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~--~rC~i~~vl~E~DRILRPgG~~ii--~D~~~~~~~i~~  182 (223)
                      .+. ..|+-.+.--+|..|...+ ..||+|=|.-=|..-.  ..+.+..++.+.-|+|+|||.+++  +.....-..+++
T Consensus        73 ~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~  152 (170)
T PF05175_consen   73 RNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKE  152 (170)
T ss_dssp             HHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHH
T ss_pred             HHHHhcCccccccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHH
Confidence            222 2343212122234455555 9999987764443222  234567999999999999998854  444444444555


Q ss_pred             HHH
Q 027471          183 LVK  185 (223)
Q Consensus       183 i~~  185 (223)
                      ++.
T Consensus       153 ~f~  155 (170)
T PF05175_consen  153 LFG  155 (170)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.26  E-value=5.6e-07  Score=63.02  Aligned_cols=96  Identities=21%  Similarity=0.298  Sum_probs=57.8

Q ss_pred             EEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCc---ccccccccccCCC-CCcchhhhhhhhhhccc
Q 027471           73 NVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGL---FGLYHDWCESFNT-YPRTYDLLHADHLFSTI  145 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGL---i~~~~dwce~f~t-yPrtyDllH~~~lfs~~  145 (223)
                      +++|+|||.|+++..+.+.   .++++.+.+.... ..+...+.+.   +-.++.=+..+.. -+..||++.+...++..
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALE-LARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHH-HHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            4899999999999999873   3444443322111 1110111121   1122211112222 34789999998877763


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEe
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                        .-....++..+.+.|||||.+++.
T Consensus        80 --~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 --VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence              113458899999999999999986

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.25  E-value=4.3e-06  Score=73.94  Aligned_cols=132  Identities=13%  Similarity=0.119  Sum_probs=70.7

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhh
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHA  138 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~  138 (223)
                      +++.|. +....-.|=|||||-|-.|+++.+. .|.-.++++.+..             +...-....|--+.+.|++-+
T Consensus        63 iI~~l~-~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~-------------Vtacdia~vPL~~~svDv~Vf  128 (219)
T PF05148_consen   63 IIEWLK-KRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR-------------VTACDIANVPLEDESVDVAVF  128 (219)
T ss_dssp             HHHHHC-TS-TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTT-------------EEES-TTS-S--TT-EEEEEE
T ss_pred             HHHHHH-hcCCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCC-------------EEEecCccCcCCCCceeEEEE
Confidence            444443 2233457999999999999887643 4666666665322             222111233334488998544


Q ss_pred             hhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHHH---HHHHHHHHhCCCeeEEeecCCC-eeEEEEEecc
Q 027471          139 DHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETI---VEVEDLVKSLHWDVRMIYTNDN-QGMLCVHKTY  209 (223)
Q Consensus       139 ~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~---~~i~~i~~~l~W~~~~~~~~~~-e~~L~~~K~~  209 (223)
                      .  +|.-  .-+..+++.|..|||||||.++|-+-....   +..-+.++++-.+....|..++ =.++..+|.-
T Consensus       129 c--LSLM--GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~  199 (219)
T PF05148_consen  129 C--LSLM--GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR  199 (219)
T ss_dssp             E--S-----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred             E--hhhh--CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence            3  1211  124569999999999999999999776654   4444567888888876664333 3334445543

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.24  E-value=9.5e-07  Score=74.00  Aligned_cols=85  Identities=19%  Similarity=0.330  Sum_probs=58.1

Q ss_pred             EEEeeCCchHHHHHHhhCC-C--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhcccccc
Q 027471           73 NVMDMRAVYGGFAAALKDL-K--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKR  148 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~-~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~~r  148 (223)
                      +|||+|||.|.++.+|.+. +  ++.+.+++    +.+..+.++|+--...|..+.++.++ ++||+|-|.+.|++..+ 
T Consensus        16 ~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~----~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d-   90 (194)
T TIGR02081        16 RVLDLGCGDGELLALLRDEKQVRGYGIEIDQ----DGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN-   90 (194)
T ss_pred             EEEEeCCCCCHHHHHHHhccCCcEEEEeCCH----HHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC-
Confidence            7999999999999999764 3  33343322    24555556675434444333344455 89999999999987765 


Q ss_pred             cchhHHHHhhhhcccC
Q 027471          149 CSLKAVVAEVDRILRP  164 (223)
Q Consensus       149 C~i~~vl~E~DRILRP  164 (223)
                        ...+|.||-|++++
T Consensus        91 --~~~~l~e~~r~~~~  104 (194)
T TIGR02081        91 --PEEILDEMLRVGRH  104 (194)
T ss_pred             --HHHHHHHHHHhCCe
Confidence              35788888777665

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.23  E-value=2e-06  Score=78.30  Aligned_cols=131  Identities=21%  Similarity=0.306  Sum_probs=76.1

Q ss_pred             eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcc---cccc-cccccCCCCC-cchhhhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLF---GLYH-DWCESFNTYP-RTYDLLHADHLF  142 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi---~~~~-dwce~f~tyP-rtyDllH~~~lf  142 (223)
                      .+|||+|||+|.++.+|+..    .|+.+.++|..-.-..+-+...|+-   -+++ |+   +...| .+||+|-|.-=+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~---~~~l~~~~fDlIvsNPPy  211 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL---FAALPGRRYDLIVSNPPY  211 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch---hhhCCCCCccEEEECCCC
Confidence            57999999999999999765    4666666554333233333444652   2232 32   23344 689998875111


Q ss_pred             -------------ccccc--------c-cchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEeecCCCe
Q 027471          143 -------------STIKK--------R-CSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQ  200 (223)
Q Consensus       143 -------------s~~~~--------r-C~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~~~~~e  200 (223)
                                   .+...        . -....++.++.+.|+|||.+++.-..+ ...+.+++....+.- ...+...+
T Consensus       212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~-~~~~~~~~  289 (307)
T PRK11805        212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTW-LEFENGGD  289 (307)
T ss_pred             CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEE-EEecCCCc
Confidence                         11110        0 113478999999999999999963333 345777766543221 12233455


Q ss_pred             eEEEEEe
Q 027471          201 GMLCVHK  207 (223)
Q Consensus       201 ~~L~~~K  207 (223)
                      +++++.+
T Consensus       290 ~~~~~~~  296 (307)
T PRK11805        290 GVFLLTR  296 (307)
T ss_pred             eEEEEEH
Confidence            6666554

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.22  E-value=8.9e-07  Score=78.80  Aligned_cols=125  Identities=15%  Similarity=0.226  Sum_probs=75.9

Q ss_pred             ccchhHhhhhHHHHHhhhhhhcc-C-CCCCCceEEEeeCCchHH----HHHHhhCC---------CeEEEEecCCCCCCC
Q 027471           42 PEDFTADYQHWKNVVSKSYLNGM-G-INWSFVRNVMDMRAVYGG----FAAALKDL---------KVWVMNVVPIESPDT  106 (223)
Q Consensus        42 ~~~f~~D~~~W~~~v~~~Y~~~l-~-i~~~~iRnvLDmgaG~Gg----FAA~L~~~---------~V~vmnv~p~~~~~~  106 (223)
                      ...|-.|..+|..-... .+..| . ...+.--+|+|+|||+|-    .|-.|.+.         .|+...+++.    .
T Consensus        70 ~T~FfR~~~~~~~l~~~-vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~----~  144 (264)
T smart00138       70 ETRFFRESKHFEALEEK-VLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK----A  144 (264)
T ss_pred             CCcccCCcHHHHHHHHH-HhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH----H
Confidence            44566777778776654 33222 1 122334689999999994    55555432         3555555543    2


Q ss_pred             hhhHHh--------hCccc--------------------------ccccccccCCCCC-cchhhhhhhhhhcccccccch
Q 027471          107 LPIIYE--------RGLFG--------------------------LYHDWCESFNTYP-RTYDLLHADHLFSTIKKRCSL  151 (223)
Q Consensus       107 l~~i~e--------RGLi~--------------------------~~~dwce~f~tyP-rtyDllH~~~lfs~~~~rC~i  151 (223)
                      ++.+.+        |+++.                          ..||.++.  .+| +.||+|.|.++|.+..+ -..
T Consensus       145 L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~--~~~~~~fD~I~crnvl~yf~~-~~~  221 (264)
T smart00138      145 LEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAE--SPPLGDFDLIFCRNVLIYFDE-PTQ  221 (264)
T ss_pred             HHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCC--CCccCCCCEEEechhHHhCCH-HHH
Confidence            222211        22211                          22332221  133 89999999999887753 234


Q ss_pred             hHHHHhhhhcccCCcEEEEeccH
Q 027471          152 KAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       152 ~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      ..++.++.|+|+|||++++-...
T Consensus       222 ~~~l~~l~~~L~pGG~L~lg~~E  244 (264)
T smart00138      222 RKLLNRFAEALKPGGYLFLGHSE  244 (264)
T ss_pred             HHHHHHHHHHhCCCeEEEEECcc
Confidence            58999999999999999997543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.21  E-value=2.2e-06  Score=75.73  Aligned_cols=146  Identities=16%  Similarity=0.136  Sum_probs=85.1

Q ss_pred             HhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHh-hCccccccc
Q 027471           47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYE-RGLFGLYHD  121 (223)
Q Consensus        47 ~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~e-RGLi~~~~d  121 (223)
                      .+|+...+.+.+ ..+.    ...-.+|||+|||+|.++-.|.+.    .|+.+.+.|.... ..+.+++ .|.--...|
T Consensus        68 ~~Te~Lv~~~l~-~~~~----~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~-~A~~N~~~~~~~~~~~D  141 (251)
T TIGR03704        68 RRTEFLVDEAAA-LARP----RSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVR-CARRNLADAGGTVHEGD  141 (251)
T ss_pred             ccHHHHHHHHHH-hhcc----cCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHH-HHHHHHHHcCCEEEEee
Confidence            466666655543 2221    122347999999999999887643    4666666544322 1122222 232113334


Q ss_pred             ccccCCC-CCcchhhhhhhhhhcc-------------cccccc----------hhHHHHhhhhcccCCcEEEEeccHHHH
Q 027471          122 WCESFNT-YPRTYDLLHADHLFST-------------IKKRCS----------LKAVVAEVDRILRPDGNLILRDDAETI  177 (223)
Q Consensus       122 wce~f~t-yPrtyDllH~~~lfs~-------------~~~rC~----------i~~vl~E~DRILRPgG~~ii~D~~~~~  177 (223)
                      +.+.++. +...||+|=++--+..             +..++.          +..++..+.++|+|||.+++.-..+..
T Consensus       142 ~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~  221 (251)
T TIGR03704       142 LYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQA  221 (251)
T ss_pred             chhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchH
Confidence            4333322 2356888765432210             001111          347888899999999999997655666


Q ss_pred             HHHHHHHHhCCCeeEEeecCC
Q 027471          178 VEVEDLVKSLHWDVRMIYTND  198 (223)
Q Consensus       178 ~~i~~i~~~l~W~~~~~~~~~  198 (223)
                      ..+..+++...|+..+..+++
T Consensus       222 ~~v~~~l~~~g~~~~~~~~~~  242 (251)
T TIGR03704       222 PLAVEAFARAGLIARVASSEE  242 (251)
T ss_pred             HHHHHHHHHCCCCceeeEccc
Confidence            788888888888877655443

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.21  E-value=3.6e-06  Score=80.65  Aligned_cols=134  Identities=11%  Similarity=0.133  Sum_probs=84.2

Q ss_pred             EEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc-cc-ccccccccCCCCC--cchhhhhhhhhhcc
Q 027471           73 NVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL-FG-LYHDWCESFNTYP--RTYDLLHADHLFST  144 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL-i~-~~~dwce~f~tyP--rtyDllH~~~lfs~  144 (223)
                      +|||+|||+|.++.+|+.+    .|+.+.++|..-....+-+...|+ +- ...|+.+.  .+|  ..||+|-|+-=+..
T Consensus       254 rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~--~l~~~~~FDLIVSNPPYI~  331 (423)
T PRK14966        254 RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDT--DMPSEGKWDIIVSNPPYIE  331 (423)
T ss_pred             EEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcc--ccccCCCccEEEECCCCCC
Confidence            7999999999999888643    466777765543322222223343 22 22343322  122  57999877432210


Q ss_pred             ---------------------cccc-cchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE--EeecCCCe
Q 027471          145 ---------------------IKKR-CSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR--MIYTNDNQ  200 (223)
Q Consensus       145 ---------------------~~~r-C~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~--~~~~~~~e  200 (223)
                                           ..+. -.+..++-+..+.|+|||++++--..+.-+.++++++...|...  ..|-.+.+
T Consensus       332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~d  411 (423)
T PRK14966        332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLD  411 (423)
T ss_pred             cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCCc
Confidence                                 0011 11337788888999999999986555666788888888878643  34556789


Q ss_pred             eEEEEEec
Q 027471          201 GMLCVHKT  208 (223)
Q Consensus       201 ~~L~~~K~  208 (223)
                      +++++++.
T Consensus       412 R~v~~~~~  419 (423)
T PRK14966        412 RVTLGKYM  419 (423)
T ss_pred             EEEEEEEh
Confidence            99998753

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.20  E-value=1.5e-06  Score=75.46  Aligned_cols=95  Identities=16%  Similarity=0.116  Sum_probs=60.5

Q ss_pred             eEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcccc--------------cccccccCCCCC----c
Q 027471           72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFGL--------------YHDWCESFNTYP----R  131 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~--------------~~dwce~f~tyP----r  131 (223)
                      .+|||+|||.|-.|.+|+++  .|+.+.++|..-.   .+..+.|+...              +.-.|..|-.++    .
T Consensus        36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~  112 (213)
T TIGR03840        36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVE---QFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG  112 (213)
T ss_pred             CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHH---HHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence            58999999999999999999  6777888776322   11233444211              111333443322    3


Q ss_pred             chhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEE
Q 027471          132 TYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLIL  170 (223)
Q Consensus       132 tyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii  170 (223)
                      +||++-...+|.+.. ....+.++..|-|.|||||.+++
T Consensus       113 ~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll  150 (213)
T TIGR03840       113 PVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLL  150 (213)
T ss_pred             CcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence            566655554554442 33446899999999999997444

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.20  E-value=1.6e-06  Score=75.44  Aligned_cols=91  Identities=24%  Similarity=0.377  Sum_probs=74.1

Q ss_pred             eEEEeeCCchHHHHHHhhC-CCeEEEEecCCCC-CCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhcccccc
Q 027471           72 RNVMDMRAVYGGFAAALKD-LKVWVMNVVPIES-PDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKR  148 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~-~~V~vmnv~p~~~-~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~~r  148 (223)
                      ..|||+|||.|.+-++|.+ ++|.+.-+   +- ++.+..+.+||+.=+-+|.-+.++.|| .+||.+=++..+.+..+ 
T Consensus        15 srVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~-   90 (193)
T PF07021_consen   15 SRVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR-   90 (193)
T ss_pred             CEEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH-
Confidence            6899999999999999988 57877665   32 346888999999988888888899999 99999888866665543 


Q ss_pred             cchhHHHHhhhhcccCCcEEEEe
Q 027471          149 CSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       149 C~i~~vl~E~DRILRPgG~~ii~  171 (223)
                        -+.+|.||=||   |...|++
T Consensus        91 --P~~vL~EmlRV---gr~~IVs  108 (193)
T PF07021_consen   91 --PDEVLEEMLRV---GRRAIVS  108 (193)
T ss_pred             --HHHHHHHHHHh---cCeEEEE
Confidence              24899999655   7788888

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.19  E-value=9e-07  Score=76.24  Aligned_cols=98  Identities=20%  Similarity=0.341  Sum_probs=69.8

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc-ccccccccCCCCCcchhhhhhhh
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADH  140 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~tyPrtyDllH~~~  140 (223)
                      .++...++|+|+|+|.|.++++++++    .++++.+     |..++.+.+..-+- +-+|   -|.++|. +|++...+
T Consensus        96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-----p~v~~~~~~~~rv~~~~gd---~f~~~P~-~D~~~l~~  166 (241)
T PF00891_consen   96 FDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-----PEVIEQAKEADRVEFVPGD---FFDPLPV-ADVYLLRH  166 (241)
T ss_dssp             STTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE------HHHHCCHHHTTTEEEEES----TTTCCSS-ESEEEEES
T ss_pred             ccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-----Hhhhhcccccccccccccc---HHhhhcc-ccceeeeh
Confidence            56778899999999999999999876    4555555     22233333322222 3332   4567889 99999999


Q ss_pred             hhcccccccchhHHHHhhhhcccCC--cEEEEecc
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPD--GNLILRDD  173 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPg--G~~ii~D~  173 (223)
                      +++.|.+. ....+|.-+-+.|+||  |.++|-|.
T Consensus       167 vLh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~  200 (241)
T PF00891_consen  167 VLHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEM  200 (241)
T ss_dssp             SGGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred             hhhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence            99999862 2368999999999999  99999744

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.14  E-value=4.6e-06  Score=72.60  Aligned_cols=95  Identities=13%  Similarity=0.065  Sum_probs=62.1

Q ss_pred             eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccc--------------cccccccCCCC---C-c
Q 027471           72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGL--------------YHDWCESFNTY---P-R  131 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~--------------~~dwce~f~ty---P-r  131 (223)
                      .+|||.|||.|--|.+|++++  |+.+.++|.--.   .+..++|+...              +.-+|..|-.+   + .
T Consensus        39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~---~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~  115 (218)
T PRK13255         39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVE---QFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA  115 (218)
T ss_pred             CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHH---HHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence            489999999999999999995  566666655222   12346676432              12233333332   2 4


Q ss_pred             chhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEE
Q 027471          132 TYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLIL  170 (223)
Q Consensus       132 tyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii  170 (223)
                      +||++-...+|.+.. ...-..++..+.++|+|||.+++
T Consensus       116 ~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        116 DVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence            677776666666553 23346899999999999996443

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.11  E-value=3.2e-06  Score=72.63  Aligned_cols=92  Identities=15%  Similarity=0.251  Sum_probs=63.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc-cccc-ccccccCCCCC-cchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL-FGLY-HDWCESFNTYP-RTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL-i~~~-~dwce~f~tyP-rtyDllH~~~lfs  143 (223)
                      ...|||+|||+|.+...|.+.    .|+.+.++|.    .++.+.++-- +.++ .|   .+..++ ++||+|-|.+++.
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~----~l~~A~~~~~~~~~~~~d---~~~~~~~~sfD~V~~~~vL~  116 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEY----AVEKAKAYLPNINIIQGS---LFDPFKDNFFDLVLTKGVLI  116 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHH----HHHHHHhhCCCCcEEEee---ccCCCCCCCEEEEEECChhh
Confidence            457999999999999999765    3555665544    4444444311 1122 22   222355 8999999999998


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      |.. .-.+..++.|+.|++  ++++++.+
T Consensus       117 hl~-p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587       117 HIN-PDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             hCC-HHHHHHHHHHHHhhc--CcEEEEEE
Confidence            875 335679999999998  57888864

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.10  E-value=1e-06  Score=79.43  Aligned_cols=120  Identities=22%  Similarity=0.334  Sum_probs=89.6

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc-ccccccccCC--CCCcchhhhhhhh
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFN--TYPRTYDLLHADH  140 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~--tyPrtyDllH~~~  140 (223)
                      .+.+..|.+||+|||+|-++-+|+++  .++-+.++    .|.+..+.|+|+-- +++-=...|.  .=+.-||||-+..
T Consensus       121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS----~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD  196 (287)
T COG4976         121 ADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDIS----ENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD  196 (287)
T ss_pred             ccCCccceeeecccCcCcccHhHHHHHhhccCCchh----HHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh
Confidence            45667999999999999999999887  44444442    35889999999843 4443222355  3558899999999


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEe-----ccH-------H----HHHHHHHHHHhCCCeeE
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILR-----DDA-------E----TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~-----D~~-------~----~~~~i~~i~~~l~W~~~  192 (223)
                      +|....+   ++.++.=+++.|.|||.|.|+     |.-       +    -...|...+.+--.++.
T Consensus       197 Vl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i  261 (287)
T COG4976         197 VLPYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVI  261 (287)
T ss_pred             HHHhhcc---hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEE
Confidence            9998876   579999999999999999998     111       1    12467777777777765

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.09  E-value=1.8e-06  Score=77.71  Aligned_cols=113  Identities=20%  Similarity=0.140  Sum_probs=74.6

Q ss_pred             CCceEEEeeCCchHHHHHHh-hCC--CeEEEEecCCCCCCChhhHHhhCcccccccccccCC--------CCCcchhhhh
Q 027471           69 SFVRNVMDMRAVYGGFAAAL-KDL--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN--------TYPRTYDLLH  137 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L-~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~--------tyPrtyDllH  137 (223)
                      ..-|.++|+|||.| +|+.. ++.  .|....+++.    +|++ ...+-.-.|++=--+++        -=+++.|||-
T Consensus        32 ~~h~~a~DvG~G~G-qa~~~iae~~k~VIatD~s~~----mL~~-a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~  105 (261)
T KOG3010|consen   32 EGHRLAWDVGTGNG-QAARGIAEHYKEVIATDVSEA----MLKV-AKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLIT  105 (261)
T ss_pred             CCcceEEEeccCCC-cchHHHHHhhhhheeecCCHH----HHHH-hhcCCCcccccCCccccccccccccCCCcceeeeh
Confidence            34569999999999 65555 444  6777666544    4442 23333334443222222        2379999999


Q ss_pred             hhhhhcccccccchhHHHHhhhhcccCCc-EE---EEeccHHHHHHHHHHHHhCCCee
Q 027471          138 ADHLFSTIKKRCSLKAVVAEVDRILRPDG-NL---ILRDDAETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       138 ~~~lfs~~~~rC~i~~vl~E~DRILRPgG-~~---ii~D~~~~~~~i~~i~~~l~W~~  191 (223)
                      |+..|+    .|.++.++-++-|||||.| .+   ..+|+.....++.+++.+++|+.
T Consensus       106 ~Aqa~H----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~~  159 (261)
T KOG3010|consen  106 AAQAVH----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDST  159 (261)
T ss_pred             hhhhHH----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhcc
Confidence            986554    7889999999999999888 22   22455555677777777777764

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.07  E-value=1.8e-06  Score=73.94  Aligned_cols=112  Identities=17%  Similarity=0.222  Sum_probs=72.5

Q ss_pred             EEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC----CC-cchhhhhhhhhhc
Q 027471           73 NVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT----YP-RTYDLLHADHLFS  143 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t----yP-rtyDllH~~~lfs  143 (223)
                      .+||+|||.|.|..+|+.+    ++..+-+...-.......+..+||-.+..=.|++...    ++ .+.|-||..  |.
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~--FP   97 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN--FP   97 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE--S-
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe--CC
Confidence            8999999999999999765    3444444332223467778888986644433344432    44 788887753  43


Q ss_pred             -------ccccccch-hHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhC
Q 027471          144 -------TIKKRCSL-KAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSL  187 (223)
Q Consensus       144 -------~~~~rC~i-~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l  187 (223)
                             |.+ |..+ +.+|.++.|+|+|||.+.+. |..+..+.+.+.+...
T Consensus        98 DPWpK~rH~k-rRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~  149 (195)
T PF02390_consen   98 DPWPKKRHHK-RRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES  149 (195)
T ss_dssp             ----SGGGGG-GSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred             CCCcccchhh-hhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence                   222 3333 38899999999999999885 7777777777666554

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.06  E-value=5.6e-06  Score=75.70  Aligned_cols=128  Identities=21%  Similarity=0.204  Sum_probs=78.5

Q ss_pred             eEEEeeCCchHHH--HHHhhC-CCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhccccc
Q 027471           72 RNVMDMRAVYGGF--AAALKD-LKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKK  147 (223)
Q Consensus        72 RnvLDmgaG~GgF--AA~L~~-~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~~  147 (223)
                      .+|||+|||+|=.  ||++.. +.|..+.+-|.-...+.+-+..-|+-.-+. .+ .....+ ..||+|=|.-+..    
T Consensus       163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~-v~-~~~~~~~~~~dlvvANI~~~----  236 (295)
T PF06325_consen  163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIE-VS-LSEDLVEGKFDLVVANILAD----  236 (295)
T ss_dssp             SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEE-ES-CTSCTCCS-EEEEEEES-HH----
T ss_pred             CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEE-EE-EecccccccCCEEEECCCHH----
Confidence            5899999999964  344433 368888886664444445455556544221 11 222344 8999987752221    


Q ss_pred             ccchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCeeEEeecCCCeeEEEEEec
Q 027471          148 RCSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT  208 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K~  208 (223)
                        .+..++-++.+.|+|||++|++--.. ..+.+.+.++. .++......++.=.-|+++|+
T Consensus       237 --vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~Kk  295 (295)
T PF06325_consen  237 --VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEGEWVALVFKKK  295 (295)
T ss_dssp             --HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE-
T ss_pred             --HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEECCEEEEEEEeC
Confidence              23356777899999999999994433 34566666676 777755545566677777774

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.01  E-value=4.5e-06  Score=70.74  Aligned_cols=98  Identities=15%  Similarity=0.217  Sum_probs=57.3

Q ss_pred             hhccCCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCC--cchh
Q 027471           61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYP--RTYD  134 (223)
Q Consensus        61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyP--rtyD  134 (223)
                      +..+.+..  -.+|||+|||+|.+++.|.+.  .|..+...|.......+.....|+-.  +.+.  ..+..++  ..||
T Consensus        71 ~~~l~~~~--~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD  146 (212)
T PRK00312         71 TELLELKP--GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFD  146 (212)
T ss_pred             HHhcCCCC--CCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcC
Confidence            33444433  357999999999999877665  35555443222111111122225532  2221  1233444  7899


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      +|.++..+         ..+.-++-+.|+|||.+++.
T Consensus       147 ~I~~~~~~---------~~~~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        147 RILVTAAA---------PEIPRALLEQLKEGGILVAP  174 (212)
T ss_pred             EEEEccCc---------hhhhHHHHHhcCCCcEEEEE
Confidence            99887433         34455677899999999986

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=2.4e-05  Score=72.10  Aligned_cols=129  Identities=19%  Similarity=0.209  Sum_probs=77.7

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC--cchhhhhhhhhhcc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP--RTYDLLHADHLFST  144 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP--rtyDllH~~~lfs~  144 (223)
                      .-++|||+|||+|=+|-+.++.+   |....+-|.--.-..+-+.--|+..+.+.=+-...+.+  +.||+|-|.= +. 
T Consensus       162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-LA-  239 (300)
T COG2264         162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-LA-  239 (300)
T ss_pred             CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-hH-
Confidence            57899999999999887777774   55566644322112221222222222222122333355  5999988751 11 


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEeccHHH-HHHHHHHHHhCCCeeEEeecCCCeeEEEE
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVRMIYTNDNQGMLCV  205 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~-~~~i~~i~~~l~W~~~~~~~~~~e~~L~~  205 (223)
                          -.+..+.-++-|.|||||++|++--... .+.+..-+.+-.|++...... .|.+.+.
T Consensus       240 ----~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~-~eW~~i~  296 (300)
T COG2264         240 ----EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER-EEWVAIV  296 (300)
T ss_pred             ----HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec-CCEEEEE
Confidence                1233677788999999999999965443 466777787778887644333 4444433

>PRK04457 spermidine synthase; Provisional

Probab=97.95  E-value=4.7e-05  Score=67.85  Aligned_cols=135  Identities=13%  Similarity=0.137  Sum_probs=76.0

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh-Ccc------ccc-ccccccCCCCCcchhhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER-GLF------GLY-HDWCESFNTYPRTYDLL  136 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR-GLi------~~~-~dwce~f~tyPrtyDll  136 (223)
                      ...++|||+|||.|.++.++.+.    .|+++-+.|.    .++.+.+. ++.      -++ .|.-+-+...+.+||+|
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~----vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I  140 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQ----VIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVI  140 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHH----HHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEE
Confidence            34678999999999999988765    3555554333    33333332 211      122 22111233456789998


Q ss_pred             hhhhhhcccc--cccchhHHHHhhhhcccCCcEEEEe---ccHHHHHHHHHHHHhCCCeeEEee-cCCCeeEEEEEec
Q 027471          137 HADHLFSTIK--KRCSLKAVVAEVDRILRPDGNLILR---DDAETIVEVEDLVKSLHWDVRMIY-TNDNQGMLCVHKT  208 (223)
Q Consensus       137 H~~~lfs~~~--~rC~i~~vl~E~DRILRPgG~~ii~---D~~~~~~~i~~i~~~l~W~~~~~~-~~~~e~~L~~~K~  208 (223)
                      =++ .|+...  .......++.++-++|+|||.+++-   .+......++.+-+.+.-.+.... .++...+++|.|.
T Consensus       141 ~~D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~~  217 (262)
T PRK04457        141 LVD-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESHGNVAVFAFKS  217 (262)
T ss_pred             EEe-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCCccEEEEEECC
Confidence            765 454221  1222468999999999999999983   222222333444333332222222 2334678888773

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.95  E-value=5.4e-06  Score=74.33  Aligned_cols=96  Identities=14%  Similarity=0.214  Sum_probs=66.7

Q ss_pred             eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCccc-ccccccccCCC----CC-cchhhhhhhhhhc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNT----YP-RTYDLLHADHLFS  143 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~t----yP-rtyDllH~~~lfs  143 (223)
                      -.|||+|||-|.++..|+..|  |+....++.    .++++-.+.+-. +..|+- .+..    .. .+||+|-|..+..
T Consensus        61 ~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~----~I~~Ak~ha~e~gv~i~y~-~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          61 LRVLDVGCGGGILSEPLARLGASVTGIDASEK----PIEVAKLHALESGVNIDYR-QATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CeEEEecCCccHhhHHHHHCCCeeEEecCChH----HHHHHHHhhhhccccccch-hhhHHHHHhcCCCccEEEEhhHHH
Confidence            369999999999999999987  333444332    455554333322 222210 1111    22 6899999999999


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEeccHH
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDAE  175 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~  175 (223)
                      |..+-   +.++.+..+.|||||.+++++...
T Consensus       136 Hv~dp---~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         136 HVPDP---ESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             ccCCH---HHHHHHHHHHcCCCcEEEEecccc
Confidence            98874   479999999999999999995543

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=97.94  E-value=4.8e-05  Score=68.67  Aligned_cols=155  Identities=16%  Similarity=0.183  Sum_probs=93.1

Q ss_pred             hHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccccccc
Q 027471           46 TADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHD  121 (223)
Q Consensus        46 ~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~d  121 (223)
                      ..||..+...+.. -....    ..  +|+|+|||+|.-|.+|+..    .|+...++|.--.-...-+...|+..++.-
T Consensus        93 r~dTe~Lve~~l~-~~~~~----~~--~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~  165 (280)
T COG2890          93 RPDTELLVEAALA-LLLQL----DK--RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVV  165 (280)
T ss_pred             CCchHHHHHHHHH-hhhhc----CC--cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEE
Confidence            5788888777642 12211    11  8999999999999999877    356666655321112222233354221111


Q ss_pred             ccccCCCCCcchhhhhhh----------------------hhhcccccccchhHHHHhhhhcccCCcEEEEeccHHHHHH
Q 027471          122 WCESFNTYPRTYDLLHAD----------------------HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVE  179 (223)
Q Consensus       122 wce~f~tyPrtyDllH~~----------------------~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~  179 (223)
                      -+.-|+..+..||+|=|.                      .+++.....--+..++-+..++|+|||++++.-.......
T Consensus       166 ~~dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~  245 (280)
T COG2890         166 QSDLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEA  245 (280)
T ss_pred             eeecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHH
Confidence            012355555678875442                      1222221112344889999999999999999877777788


Q ss_pred             HHHHHHhCCC-ee--EEeecCCCeeEEEEEe
Q 027471          180 VEDLVKSLHW-DV--RMIYTNDNQGMLCVHK  207 (223)
Q Consensus       180 i~~i~~~l~W-~~--~~~~~~~~e~~L~~~K  207 (223)
                      +++++....+ ..  ...+-.+.+++.++++
T Consensus       246 v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~  276 (280)
T COG2890         246 VKALFEDTGFFEIVETLKDLFGRDRVVLAKL  276 (280)
T ss_pred             HHHHHHhcCCceEEEEEecCCCceEEEEEEe
Confidence            8888888884 32  1223345677777665

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.85  E-value=1.4e-05  Score=72.87  Aligned_cols=117  Identities=13%  Similarity=0.115  Sum_probs=66.8

Q ss_pred             ceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCCcchhhhhhhhhhccc-
Q 027471           71 VRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHADHLFSTI-  145 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDllH~~~lfs~~-  145 (223)
                      -..|||.+||+|+|...+...  .|....+.+........-+...|+..  +++.-...++..+.+||+|-++--|... 
T Consensus       183 g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~  262 (329)
T TIGR01177       183 GDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRST  262 (329)
T ss_pred             cCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcc
Confidence            347999999999996544443  45555554432221222222335543  2221111222223789998886333221 


Q ss_pred             --c---cccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCC
Q 027471          146 --K---KRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW  189 (223)
Q Consensus       146 --~---~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W  189 (223)
                        .   ..+....+|.|+.|+|+|||++++--+...  .++++++.--|
T Consensus       263 ~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~  309 (329)
T TIGR01177       263 TAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR  309 (329)
T ss_pred             cccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc
Confidence              1   113356899999999999999987644332  34456677666

This family is found exclusively in the Archaea.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.85  E-value=2.1e-05  Score=74.45  Aligned_cols=117  Identities=16%  Similarity=0.190  Sum_probs=65.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc--c-cccccccCCCCCcchhhhhhhh--
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG--L-YHDWCESFNTYPRTYDLLHADH--  140 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~--~-~~dwce~f~tyPrtyDllH~~~--  140 (223)
                      -.+|||+|||.|+++.++++.     .|+++.+.+.......+.+...|+-.  + ..|..+....++++||+|-++-  
T Consensus       251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc  330 (444)
T PRK14902        251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPC  330 (444)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCC
Confidence            357999999999999887653     35666664432221222233345532  2 2332221223457899976542  


Q ss_pred             ----hhcccc------cccc-------hhHHHHhhhhcccCCcEEEEec----cHHHHHHHHHHHHhC
Q 027471          141 ----LFSTIK------KRCS-------LKAVVAEVDRILRPDGNLILRD----DAETIVEVEDLVKSL  187 (223)
Q Consensus       141 ----lfs~~~------~rC~-------i~~vl~E~DRILRPgG~~ii~D----~~~~~~~i~~i~~~l  187 (223)
                          ++.+..      ....       -..+|.++-|+|||||.++++.    ..+.-..++.+++..
T Consensus       331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~  398 (444)
T PRK14902        331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEH  398 (444)
T ss_pred             CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhC
Confidence                221100      0001       1268999999999999999862    223344556655543

>TIGR03438 probable methyltransferase

Probab=97.82  E-value=1e-05  Score=73.00  Aligned_cols=94  Identities=11%  Similarity=0.142  Sum_probs=58.4

Q ss_pred             eEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh---Cccc-----ccccccccCCCCCcc-----h
Q 027471           72 RNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER---GLFG-----LYHDWCESFNTYPRT-----Y  133 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR---GLi~-----~~~dwce~f~tyPrt-----y  133 (223)
                      .+|||+|||+|.++..|.+.     .|+.+.+++.    .|+.+.++   ..++     +..|-++.++ ++..     .
T Consensus        65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~----mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~  139 (301)
T TIGR03438        65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISAD----ALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRR  139 (301)
T ss_pred             CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHH----HHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCe
Confidence            57999999999999888765     3555666554    33333332   2222     2333332222 2322     2


Q ss_pred             hhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       134 DllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      +++.++..|.+.. +-....+|-++-+.|+|||.|+|.
T Consensus       140 ~~~~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       140 LGFFPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             EEEEecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence            3455555666554 233468999999999999999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.82  E-value=0.00011  Score=67.53  Aligned_cols=108  Identities=18%  Similarity=0.264  Sum_probs=72.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccc--cCCCCCcchhhhh-hhhhhccccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCE--SFNTYPRTYDLLH-ADHLFSTIKK  147 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce--~f~tyPrtyDllH-~~~lfs~~~~  147 (223)
                      --.|-|||||-|-.|. =...+|..|.+++++..             +..  |.  ..|--++|.|++- |-.|.     
T Consensus       181 ~~vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~-------------V~~--cDm~~vPl~d~svDvaV~CLSLM-----  239 (325)
T KOG3045|consen  181 NIVIADFGCGEAKIAS-SERHKVHSFDLVAVNER-------------VIA--CDMRNVPLEDESVDVAVFCLSLM-----  239 (325)
T ss_pred             ceEEEecccchhhhhh-ccccceeeeeeecCCCc-------------eee--ccccCCcCccCcccEEEeeHhhh-----
Confidence            3458899999887765 23348999999888664             111  11  2333458999854 32221     


Q ss_pred             ccchhHHHHhhhhcccCCcEEEEeccHHHHH---HHHHHHHhCCCeeEEeecCCC
Q 027471          148 RCSLKAVVAEVDRILRPDGNLILRDDAETIV---EVEDLVKSLHWDVRMIYTNDN  199 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~---~i~~i~~~l~W~~~~~~~~~~  199 (223)
                      .-++.+++.|..|||+|||.++|-+-.....   .+.+-+++|..+....+-.++
T Consensus       240 gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~  294 (325)
T KOG3045|consen  240 GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNK  294 (325)
T ss_pred             cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcc
Confidence            2356799999999999999999986655433   344457888888766554333

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.78  E-value=3.8e-05  Score=71.16  Aligned_cols=97  Identities=15%  Similarity=0.220  Sum_probs=71.1

Q ss_pred             CceEEEeeCCchHHHHHHhhCCCe-EEEEecCCCCCCChhhHHhhCcccc---cccc---cccCCCCCcchhhhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLKV-WVMNVVPIESPDTLPIIYERGLFGL---YHDW---CESFNTYPRTYDLLHADHLF  142 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~V-~vmnv~p~~~~~~l~~i~eRGLi~~---~~dw---ce~f~tyPrtyDllH~~~lf  142 (223)
                      +-|.|||+|||-|-+.=.|+.++- .|+-+-|..-. ..|+-+-+-++|.   ++-.   =|.++. .++||+|-|.+++
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf-~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL  192 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF-YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL  192 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH-HHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence            578999999999999999998865 56666554332 5666666666541   1100   123344 5899999999998


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      =|-.+-   -..|.++-..|||||.+|+.
T Consensus       193 YHrr~P---l~~L~~Lk~~L~~gGeLvLE  218 (315)
T PF08003_consen  193 YHRRSP---LDHLKQLKDSLRPGGELVLE  218 (315)
T ss_pred             hccCCH---HHHHHHHHHhhCCCCEEEEE
Confidence            775542   48899999999999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.76  E-value=3.7e-05  Score=72.52  Aligned_cols=119  Identities=13%  Similarity=0.163  Sum_probs=66.9

Q ss_pred             cCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHh-hCccccc--ccccccC--CC--CCcc
Q 027471           64 MGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYE-RGLFGLY--HDWCESF--NT--YPRT  132 (223)
Q Consensus        64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~e-RGLi~~~--~dwce~f--~t--yPrt  132 (223)
                      |++..+  .+|||||||.|+++.++++.    .|+.+.+.+..-. .++...+ .|+-..+  .+ +..+  +.  -+.+
T Consensus       234 L~~~~g--~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~-~~~~n~~r~g~~~~v~~~~-~d~~~~~~~~~~~~  309 (426)
T TIGR00563       234 LAPQNE--ETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLK-RVYENLKRLGLTIKAETKD-GDGRGPSQWAENEQ  309 (426)
T ss_pred             hCCCCC--CeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHH-HHHHHHHHcCCCeEEEEec-cccccccccccccc
Confidence            444444  68999999999999887754    4666666444222 2222333 3553111  11 1122  11  1378


Q ss_pred             hhhhhhh------hhhccccc--c----------c-chhHHHHhhhhcccCCcEEEEe----ccHHHHHHHHHHHHh
Q 027471          133 YDLLHAD------HLFSTIKK--R----------C-SLKAVVAEVDRILRPDGNLILR----DDAETIVEVEDLVKS  186 (223)
Q Consensus       133 yDllH~~------~lfs~~~~--r----------C-~i~~vl~E~DRILRPgG~~ii~----D~~~~~~~i~~i~~~  186 (223)
                      ||.|-++      +++....+  .          . .-..+|.++-|+|||||.++++    .+.+.-..|+.++++
T Consensus       310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~  386 (426)
T TIGR00563       310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE  386 (426)
T ss_pred             cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence            9998753      33332111  0          0 0137999999999999999997    233334445555443

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.70  E-value=7e-06  Score=62.14  Aligned_cols=100  Identities=18%  Similarity=0.223  Sum_probs=58.5

Q ss_pred             eEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCc---ccccccccccCC-CCC-cchhhhhhhhhhc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGL---FGLYHDWCESFN-TYP-RTYDLLHADHLFS  143 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGL---i~~~~dwce~f~-tyP-rtyDllH~~~lfs  143 (223)
                      -+|||+|||.|.|+.++.+..   +..+.+.|.-..-....+-..|+   +.+++.-...+. .++ +.||+|=++--|.
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~   81 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG   81 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred             CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence            369999999999998887654   55555544322111111222222   223332112222 244 8899988877776


Q ss_pred             ccc-----cccchhHHHHhhhhcccCCcEEEEe
Q 027471          144 TIK-----KRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       144 ~~~-----~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ...     .+-....++.++.|+|||||.+++-
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI  114 (117)
T ss_dssp             SBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            331     1224558899999999999999874

...

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.70  E-value=4.6e-05  Score=72.14  Aligned_cols=134  Identities=15%  Similarity=0.273  Sum_probs=72.9

Q ss_pred             eEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC-------CCcchhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT-------YPRTYDLLHAD  139 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t-------yPrtyDllH~~  139 (223)
                      -+|||+|||.|+++.+|++.     .|+++.+.+.......+.+..-|+-. +.--|.....       .+.+||.|=++
T Consensus       254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~Vl~D  332 (434)
T PRK14901        254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRILLD  332 (434)
T ss_pred             CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEEEEe
Confidence            57999999999999887654     35555554432221222222335422 1111222222       23689986643


Q ss_pred             ------hhhccccc------ccc-------hhHHHHhhhhcccCCcEEEEe----ccHHHHHHHHHHHHhC-CCeeEE--
Q 027471          140 ------HLFSTIKK------RCS-------LKAVVAEVDRILRPDGNLILR----DDAETIVEVEDLVKSL-HWDVRM--  193 (223)
Q Consensus       140 ------~lfs~~~~------rC~-------i~~vl~E~DRILRPgG~~ii~----D~~~~~~~i~~i~~~l-~W~~~~--  193 (223)
                            +.+.+..+      ...       -..+|.++-|+|||||.++++    .+.+....++.++++. .|+...  
T Consensus       333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~~  412 (434)
T PRK14901        333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPPK  412 (434)
T ss_pred             CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCCC
Confidence                  22221110      001       238899999999999999987    3334556676666654 344321  


Q ss_pred             ----eecCCCeeEEEEE
Q 027471          194 ----IYTNDNQGMLCVH  206 (223)
Q Consensus       194 ----~~~~~~e~~L~~~  206 (223)
                          .+..+.+.+++|+
T Consensus       413 ~~~~P~~~~~dGfF~a~  429 (434)
T PRK14901        413 QKIWPHRQDGDGFFMAV  429 (434)
T ss_pred             CccCCCCCCCCcEEEEE
Confidence                0112346777764

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.69  E-value=5.3e-05  Score=71.62  Aligned_cols=120  Identities=17%  Similarity=0.239  Sum_probs=67.2

Q ss_pred             cCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh-Ccc-c-ccccccccCCCCC-cchhh
Q 027471           64 MGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER-GLF-G-LYHDWCESFNTYP-RTYDL  135 (223)
Q Consensus        64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR-GLi-~-~~~dwce~f~tyP-rtyDl  135 (223)
                      |++..+  ..|||+|||.|+++..+.++    .|+.+.+.+.... .++-.+++ |+- - +.+|-++....++ .+||.
T Consensus       240 l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~-~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~  316 (427)
T PRK10901        240 LAPQNG--ERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLE-RVRENLQRLGLKATVIVGDARDPAQWWDGQPFDR  316 (427)
T ss_pred             cCCCCC--CEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHH-HHHHHHHHcCCCeEEEEcCcccchhhcccCCCCE
Confidence            344443  57999999999999888765    3555655544322 22223333 432 1 2223222111233 78999


Q ss_pred             hhhhhhhccc-----------c-cc-------cchhHHHHhhhhcccCCcEEEEec----cHHHHHHHHHHHHh
Q 027471          136 LHADHLFSTI-----------K-KR-------CSLKAVVAEVDRILRPDGNLILRD----DAETIVEVEDLVKS  186 (223)
Q Consensus       136 lH~~~lfs~~-----------~-~r-------C~i~~vl~E~DRILRPgG~~ii~D----~~~~~~~i~~i~~~  186 (223)
                      |=++--++..           . ..       .....+|.++-|+|||||.++++.    ..+....++.++++
T Consensus       317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~  390 (427)
T PRK10901        317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR  390 (427)
T ss_pred             EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence            8743222211           0 00       112378999999999999999873    33444555555544

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.69  E-value=7.5e-05  Score=70.93  Aligned_cols=115  Identities=17%  Similarity=0.258  Sum_probs=66.8

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCC-C-cchhhhhhh----
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY-P-RTYDLLHAD----  139 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~ty-P-rtyDllH~~----  139 (223)
                      -..|||+|||.|+++.+|.+.     .|+.+.+.+.......+.+...|+-. +.--|....++ + .+||.|=++    
T Consensus       251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~~~~~~fD~Vl~D~Pcs  329 (445)
T PRK14904        251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSFSPEEQPDAILLDAPCT  329 (445)
T ss_pred             CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCcccccccCCCCCEEEEcCCCC
Confidence            367999999999987766542     46667665554332333344456521 11112233332 3 679997642    


Q ss_pred             --hhhccc-----c-cccch-------hHHHHhhhhcccCCcEEEEec----cHHHHHHHHHHHHh
Q 027471          140 --HLFSTI-----K-KRCSL-------KAVVAEVDRILRPDGNLILRD----DAETIVEVEDLVKS  186 (223)
Q Consensus       140 --~lfs~~-----~-~rC~i-------~~vl~E~DRILRPgG~~ii~D----~~~~~~~i~~i~~~  186 (223)
                        +.+...     . ....+       ..+|.++-|+|||||.++++.    +.+.-..++.++++
T Consensus       330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~  395 (445)
T PRK14904        330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR  395 (445)
T ss_pred             CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence              222111     0 00111       268999999999999999983    33445566666664

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=97.69  E-value=4.3e-05  Score=67.81  Aligned_cols=115  Identities=18%  Similarity=0.204  Sum_probs=61.6

Q ss_pred             eEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCCcchhhhhhhhhhcc
Q 027471           72 RNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHADHLFST  144 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDllH~~~lfs~  144 (223)
                      .+|||++||.|+++..|++.     .|+.+.+.+.......+-+...|+..  +++.-...++.....||.|-++--.|.
T Consensus        73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg  152 (264)
T TIGR00446        73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSG  152 (264)
T ss_pred             CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCC
Confidence            56999999999998776543     35555444332221222222335422  232212223333356998765422221


Q ss_pred             c------cc------cc-------chhHHHHhhhhcccCCcEEEEe----ccHHHHHHHHHHHHh
Q 027471          145 I------KK------RC-------SLKAVVAEVDRILRPDGNLILR----DDAETIVEVEDLVKS  186 (223)
Q Consensus       145 ~------~~------rC-------~i~~vl~E~DRILRPgG~~ii~----D~~~~~~~i~~i~~~  186 (223)
                      .      .+      .-       .-..+|.++-|+|||||.++++    ...+.-..++.+++.
T Consensus       153 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~  217 (264)
T TIGR00446       153 EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK  217 (264)
T ss_pred             CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence            1      00      00       0126999999999999999998    233333444555443

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=0.00015  Score=66.84  Aligned_cols=127  Identities=20%  Similarity=0.343  Sum_probs=77.6

Q ss_pred             EEEeeCCchHHHHHHhhCCC----eEEEEec--CCCCC-CChhhHHhhCccc--ccccccccCCCCCcchhhhhhhhhhc
Q 027471           73 NVMDMRAVYGGFAAALKDLK----VWVMNVV--PIESP-DTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~~----V~vmnv~--p~~~~-~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      +|+|+|||||-.++.|+++.    |+...+.  .++.. .++..   -++-+  ++++  ..++.-...||+|=|.-=|+
T Consensus       161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~---N~~~~~~v~~s--~~~~~v~~kfd~IisNPPfh  235 (300)
T COG2813         161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA---NGVENTEVWAS--NLYEPVEGKFDLIISNPPFH  235 (300)
T ss_pred             cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH---cCCCccEEEEe--cccccccccccEEEeCCCcc
Confidence            89999999999999998873    3332321  11111 12222   33333  3332  23333335899976666665


Q ss_pred             ccccc--cchhHHHHhhhhcccCCcEEEEecc--HHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEec
Q 027471          144 TIKKR--CSLKAVVAEVDRILRPDGNLILRDD--AETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT  208 (223)
Q Consensus       144 ~~~~r--C~i~~vl~E~DRILRPgG~~ii~D~--~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K~  208 (223)
                      .-+.-  -..+.++.+.-+-|++||.++|--+  ..+-.+++++..    ++...-.+++-+||-++|.
T Consensus       236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~~gf~Vl~a~k~  300 (300)
T COG2813         236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKNGGFKVLRAKKA  300 (300)
T ss_pred             CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeCCCEEEEEEecC
Confidence            43321  1123789999999999999988644  334556666555    5555555667788877763

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.63  E-value=6.3e-05  Score=73.05  Aligned_cols=111  Identities=17%  Similarity=0.180  Sum_probs=73.4

Q ss_pred             CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccC----CCCC-cchhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF----NTYP-RTYDLLHADH  140 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f----~tyP-rtyDllH~~~  140 (223)
                      .-..+||+|||.|.|.+.++.+    ++..+-+.....-..+..+.++||-.+.. .|..+    ..|| ++.|-+|.. 
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~-~~~~~~~~~~~~~~~sv~~i~i~-  424 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLL-FPNNLDLILNDLPNNSLDGIYIL-  424 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEE-EcCCHHHHHHhcCcccccEEEEE-
Confidence            5788999999999999999876    44555543322223556677788754322 33333    2266 888887764 


Q ss_pred             hhc-------ccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHH
Q 027471          141 LFS-------TIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDL  183 (223)
Q Consensus       141 lfs-------~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i  183 (223)
                       |.       |.+.|=--+..|.++.|+|+|||.+.+. |..+..+.+...
T Consensus       425 -FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~  474 (506)
T PRK01544        425 -FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIEL  474 (506)
T ss_pred             -CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH
Confidence             54       2233333348999999999999999875 666665554444

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.62  E-value=5.1e-05  Score=70.08  Aligned_cols=98  Identities=14%  Similarity=0.083  Sum_probs=58.0

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC---CCcch
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT---YPRTY  133 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t---yPrty  133 (223)
                      +.+.++.+  .+|||+|||+|.+++.|.+.     .|+.+.+.|.......+.+.+.|+-. ++-.++....   ....|
T Consensus        74 ~~L~i~~g--~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~~~~f  150 (322)
T PRK13943         74 EWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYGVPEFAPY  150 (322)
T ss_pred             HhcCCCCC--CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhcccccCCc
Confidence            44555544  47999999999999988753     25656555432221223333445522 1212233222   12679


Q ss_pred             hhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       134 DllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      |+|.++.         .+..+...+-|.|+|||.+++-
T Consensus       151 D~Ii~~~---------g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        151 DVIFVTV---------GVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             cEEEECC---------chHHhHHHHHHhcCCCCEEEEE
Confidence            9988762         2234445567899999998885

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.60  E-value=5.7e-05  Score=71.85  Aligned_cols=119  Identities=18%  Similarity=0.197  Sum_probs=68.3

Q ss_pred             cCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCC-Ccchh
Q 027471           64 MGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTY-PRTYD  134 (223)
Q Consensus        64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~ty-PrtyD  134 (223)
                      +++..+  .+||||+||.||.+.++++.     .|+.+.+.+..-....+.+...|+-.   ...|.. .++.+ +.+||
T Consensus       233 l~~~~g--~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD  309 (431)
T PRK14903        233 MELEPG--LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFD  309 (431)
T ss_pred             hCCCCC--CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCC
Confidence            344444  57999999999988776643     46777665543332333333446532   223322 23323 37899


Q ss_pred             hhhhhhhhccccc---c--------------c--chhHHHHhhhhcccCCcEEEEe----ccHHHHHHHHHHHH
Q 027471          135 LLHADHLFSTIKK---R--------------C--SLKAVVAEVDRILRPDGNLILR----DDAETIVEVEDLVK  185 (223)
Q Consensus       135 llH~~~lfs~~~~---r--------------C--~i~~vl~E~DRILRPgG~~ii~----D~~~~~~~i~~i~~  185 (223)
                      .|=++---|....   +              +  .-..+|.+.-+.|||||.++++    .+.+.-..|+.+++
T Consensus       310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~  383 (431)
T PRK14903        310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY  383 (431)
T ss_pred             EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence            9765322221110   0              0  0126788999999999999997    33444455666554

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.58  E-value=9.7e-05  Score=66.51  Aligned_cols=126  Identities=17%  Similarity=0.206  Sum_probs=84.8

Q ss_pred             hhccCCCCCCceEEEeeCCchHHHHHHhhCCC-eEE-EEecCCCCCCChhhHHhhCccc--ccccccccCCCCCcchhhh
Q 027471           61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLK-VWV-MNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYPRTYDLL  136 (223)
Q Consensus        61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~-V~v-mnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDll  136 (223)
                      +++|.+..+.-+-+||+|||+|--++.|.+.+ +|+ |.++|.    .|.++.||-+=|  +..|-.|-+++=|.|||-+
T Consensus        41 LELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSps----ML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~  116 (270)
T KOG1541|consen   41 LELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPS----MLEQAVERELEGDLILCDMGEGLPFRPGTFDGV  116 (270)
T ss_pred             HHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHH----HHHHHHHhhhhcCeeeeecCCCCCCCCCccceE
Confidence            45667777788999999999999999999985 555 777766    666677655544  6677778899899999974


Q ss_pred             hhhhhhc---ccccccc-----hhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCe
Q 027471          137 HADHLFS---TIKKRCS-----LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWD  190 (223)
Q Consensus       137 H~~~lfs---~~~~rC~-----i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~  190 (223)
                      -+-+...   +-...|.     +-.++--.-..|.+|+..++.=-.+..+.++.|...=.|.
T Consensus       117 ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~a  178 (270)
T KOG1541|consen  117 ISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKA  178 (270)
T ss_pred             EEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhh
Confidence            3322111   0011122     2355666889999999999995444444444444444443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.56  E-value=0.00012  Score=64.24  Aligned_cols=97  Identities=12%  Similarity=0.151  Sum_probs=58.3

Q ss_pred             CCceEEEeeCCchHHH----HHHhhCC-CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCC----C-Ccchh
Q 027471           69 SFVRNVMDMRAVYGGF----AAALKDL-KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNT----Y-PRTYD  134 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgF----AA~L~~~-~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~t----y-PrtyD  134 (223)
                      ..-++|||+|||+|.-    |+++... .|+.+-..|.......+.+.+-|+-.    ...|..+.++.    . ..+||
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD  146 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD  146 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence            4467899999988863    3343322 56666665543332444445556532    22333333332    2 36899


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      +|-++.-      .-....++.++-|.|||||.+++.
T Consensus       147 ~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        147 FAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             EEEECCC------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9877521      123446788889999999999986

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.51  E-value=0.00018  Score=64.79  Aligned_cols=123  Identities=15%  Similarity=0.241  Sum_probs=82.0

Q ss_pred             CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCC---CChhhHHhhCcccccccccccCCC-CC-cchhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESP---DTLPIIYERGLFGLYHDWCESFNT-YP-RTYDLLHADH  140 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~---~~l~~i~eRGLi~~~~dwce~f~t-yP-rtyDllH~~~  140 (223)
                      ....|||+|||.|..+=+|+++    .|..+-+.+..+.   ++++.+-=..-+-++++-=..|.. .+ .+||+|-|.-
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP  123 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP  123 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence            3889999999999988888887    3444444333321   122221111113344431111211 23 4689977753


Q ss_pred             hhc---------------ccccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE
Q 027471          141 LFS---------------TIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       141 lfs---------------~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~  192 (223)
                      =|-               ++.-.|.+++++.=.-++|+|||++.+--..+.+..+-.++++++|...
T Consensus       124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k  190 (248)
T COG4123         124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK  190 (248)
T ss_pred             CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence            332               2234588889999999999999999999999999999999999999875

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.49  E-value=0.00031  Score=49.06  Aligned_cols=93  Identities=24%  Similarity=0.306  Sum_probs=54.4

Q ss_pred             EEeeCCchHH--HHHHhhCCCeEEEE--ecCCCCCCChhhHHh----hCc---cccccccccc-CCCCC-cchhhhhhhh
Q 027471           74 VMDMRAVYGG--FAAALKDLKVWVMN--VVPIESPDTLPIIYE----RGL---FGLYHDWCES-FNTYP-RTYDLLHADH  140 (223)
Q Consensus        74 vLDmgaG~Gg--FAA~L~~~~V~vmn--v~p~~~~~~l~~i~e----RGL---i~~~~dwce~-f~tyP-rtyDllH~~~  140 (223)
                      ++|+|||.|.  +.+.+...+..+..  ..+.    .+.....    .++   -....+.... ++.-+ .+||++ +..
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~  126 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPE----MLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISL  126 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEEEeCCHH----HHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eee
Confidence            9999999998  56666665433333  2222    2222111    111   2233332221 22222 389998 664


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      ...++..   ...++.++.|+|+|+|.+++.+..
T Consensus       127 ~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         127 LVLHLLP---PAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             eehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence            3333332   579999999999999999998554

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.44  E-value=6.8e-05  Score=66.93  Aligned_cols=98  Identities=19%  Similarity=0.220  Sum_probs=62.5

Q ss_pred             ceEEEeeCCchHHHHHHhhC-CCeEEEEecCCCCCC--ChhhHHhhCc--cc-ccccccccCCCCC-cchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKD-LKVWVMNVVPIESPD--TLPIIYERGL--FG-LYHDWCESFNTYP-RTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~-~~V~vmnv~p~~~~~--~l~~i~eRGL--i~-~~~dwce~f~tyP-rtyDllH~~~lfs  143 (223)
                      =--||.+|||+|.-=-++-. .++.|--+-|..+-+  +..-+.|.--  +. .++.-.|.++.-+ .+||.|-|..++ 
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL-  155 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL-  155 (252)
T ss_pred             ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE-
Confidence            33589999999986555554 355555555543311  2222222211  11 3444456777655 999998887443 


Q ss_pred             ccccccchh---HHHHhhhhcccCCcEEEEeccH
Q 027471          144 TIKKRCSLK---AVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       144 ~~~~rC~i~---~vl~E~DRILRPgG~~ii~D~~  174 (223)
                           |+.+   ..|-|+-|+|||||.+|+-+..
T Consensus       156 -----CSve~~~k~L~e~~rlLRpgG~iifiEHv  184 (252)
T KOG4300|consen  156 -----CSVEDPVKQLNEVRRLLRPGGRIIFIEHV  184 (252)
T ss_pred             -----eccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence                 3333   8999999999999999998553

>PRK00811 spermidine synthase; Provisional

Probab=97.43  E-value=0.00017  Score=64.83  Aligned_cols=101  Identities=15%  Similarity=0.160  Sum_probs=57.0

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHh------hCc-----cccccccccc-CCCCCcchhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYE------RGL-----FGLYHDWCES-FNTYPRTYDL  135 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~e------RGL-----i~~~~dwce~-f~tyPrtyDl  135 (223)
                      ..-++|||+|||.|+.++.+.++ ++.-+-++..+.. .++++.+      .|+     +-+++.-+.. +.+-+++||+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~-vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  153 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDER-VVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV  153 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHH-HHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence            45679999999999999999887 4432222222221 2222222      122     1122221111 2223478999


Q ss_pred             hhhhhhhccccc--ccchhHHHHhhhhcccCCcEEEEe
Q 027471          136 LHADHLFSTIKK--RCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       136 lH~~~lfs~~~~--rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      |=++ ++..+..  .---+.++.++.|+|+|||.+++.
T Consensus       154 Ii~D-~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        154 IIVD-STDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             EEEC-CCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            8765 2222210  001136778899999999999985

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.41  E-value=0.00015  Score=64.15  Aligned_cols=111  Identities=20%  Similarity=0.245  Sum_probs=73.1

Q ss_pred             eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc--cccc-ccccccCCCCC--cchhhhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL--FGLY-HDWCESFNTYP--RTYDLLHADHLF  142 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL--i~~~-~dwce~f~tyP--rtyDllH~~~lf  142 (223)
                      ..+|++|||.|.|-+.|+.+    ++.-|-+-....-..+..+-+.||  +.++ +|--+-|..++  ++.|-|+-.  |
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--F  127 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--F  127 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE--C
Confidence            57999999999999999987    333333322222237788899999  3333 33223444444  488887754  5


Q ss_pred             c-------ccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHH-HHHHH
Q 027471          143 S-------TIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVE-VEDLV  184 (223)
Q Consensus       143 s-------~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~-i~~i~  184 (223)
                      .       |.+.|=.-+..|.++.|+|+|||.+.+. |.....+. +....
T Consensus       128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~  178 (227)
T COG0220         128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVL  178 (227)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHH
Confidence            5       3334433348999999999999999985 55555555 55443

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.37  E-value=0.00019  Score=65.18  Aligned_cols=90  Identities=22%  Similarity=0.425  Sum_probs=67.5

Q ss_pred             CceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc-ccccccccCCCCCcchhhhhhhhhhcccc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADHLFSTIK  146 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~tyPrtyDllH~~~lfs~~~  146 (223)
                      +..++||+|||-|+--+.|+..  .|.+=-+++.    .+-...+||.-- -..||-+    =+..||+|-|-+|+.   
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~----Mr~rL~~kg~~vl~~~~w~~----~~~~fDvIscLNvLD---  162 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPP----MRWRLSKKGFTVLDIDDWQQ----TDFKFDVISCLNVLD---  162 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHH----HHHHHHhCCCeEEehhhhhc----cCCceEEEeehhhhh---
Confidence            5778999999999999999775  5555444333    455567788842 2333432    256799999987775   


Q ss_pred             cccchh-HHHHhhhhcccCCcEEEEe
Q 027471          147 KRCSLK-AVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       147 ~rC~i~-~vl~E~DRILRPgG~~ii~  171 (223)
                       ||.-+ .+|-+|.+.|+|+|.+|+.
T Consensus       163 -Rc~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  163 -RCDRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             -ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence             88766 7889999999999999997

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00417 speE spermidine synthase

Probab=97.32  E-value=0.0011  Score=58.84  Aligned_cols=135  Identities=14%  Similarity=0.097  Sum_probs=69.9

Q ss_pred             CCceEEEeeCCchHHHHHHhhCCC----eEEEEecCCCCCCChhhHHhh-----C-c----ccccc-cccccCCCCCcch
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDLK----VWVMNVVPIESPDTLPIIYER-----G-L----FGLYH-DWCESFNTYPRTY  133 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~~----V~vmnv~p~~~~~~l~~i~eR-----G-L----i~~~~-dwce~f~tyPrty  133 (223)
                      .+-++||++|||.|+++..+.+++    |+++-+.|.    .++.+.+.     | +    +-+++ |--+-+...+++|
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~----vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~y  146 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEK----VIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTF  146 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHH----HHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCc
Confidence            345699999999999999887764    333333222    22222111     1 0    11111 1111112246889


Q ss_pred             hhhhhhhhhccc-ccccchhHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCeeEEee------cCCCee
Q 027471          134 DLLHADHLFSTI-KKRCSLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMIY------TNDNQG  201 (223)
Q Consensus       134 DllH~~~lfs~~-~~rC~i~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~~~~~------~~~~e~  201 (223)
                      |+|=++...... ....-...++..+-|+|+|||.+++...     .+....+.+.++..=-.+....      ..+.-.
T Consensus       147 DvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~  226 (270)
T TIGR00417       147 DVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWT  226 (270)
T ss_pred             cEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhE
Confidence            998665321111 1111124677889999999999998622     2223333333333222222111      124467


Q ss_pred             EEEEEe
Q 027471          202 MLCVHK  207 (223)
Q Consensus       202 ~L~~~K  207 (223)
                      +++|.|
T Consensus       227 ~~~as~  232 (270)
T TIGR00417       227 FTIGSK  232 (270)
T ss_pred             EEEEEC
Confidence            889988

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.31  E-value=0.00013  Score=60.00  Aligned_cols=54  Identities=13%  Similarity=0.135  Sum_probs=40.9

Q ss_pred             ccccccccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          118 LYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       118 ~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      .++.-++.++.-+++||+|-+...+.+..++   ..+|.|+.|+|||||.+++.|-.
T Consensus        30 ~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~---~~~l~ei~rvLkpGG~l~i~d~~   83 (160)
T PLN02232         30 WIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR---LRAMKEMYRVLKPGSRVSILDFN   83 (160)
T ss_pred             EEEechhhCCCCCCCeeEEEecchhhcCCCH---HHHHHHHHHHcCcCeEEEEEECC
Confidence            3333345665444899999998877777654   58999999999999999987543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.30  E-value=0.00014  Score=73.10  Aligned_cols=123  Identities=17%  Similarity=0.181  Sum_probs=70.5

Q ss_pred             eEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCcc----c-ccccccccCCCCCcchhhhhhhhh-h
Q 027471           72 RNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLF----G-LYHDWCESFNTYPRTYDLLHADHL-F  142 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi----~-~~~dwce~f~tyPrtyDllH~~~l-f  142 (223)
                      ++|||++||+|+|+-+++..+   |+.+.+++..-....+-+..-|+-    - +..|..+-+..+.++||+|=++-= |
T Consensus       540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f  619 (702)
T PRK11783        540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTF  619 (702)
T ss_pred             CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCC
Confidence            689999999999999998875   444444333222122222223442    1 222322222224678999876411 1


Q ss_pred             ccccc-------ccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEe
Q 027471          143 STIKK-------RCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMI  194 (223)
Q Consensus       143 s~~~~-------rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~  194 (223)
                      .....       .-....++...-|+|+|||.+++...........+.+..-.+.+...
T Consensus       620 ~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i  678 (702)
T PRK11783        620 SNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI  678 (702)
T ss_pred             CCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence            11000       11234678888999999999999755554444455666667776543

>PLN03075 nicotianamine synthase; Provisional

Probab=97.25  E-value=0.00025  Score=65.23  Aligned_cols=133  Identities=11%  Similarity=0.135  Sum_probs=76.8

Q ss_pred             CceEEEeeCCchHHHHHHhhC----CC--eEEEEecCCCCCCChhhHH-hhCccc----ccccccccCCCC--Ccchhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKD----LK--VWVMNVVPIESPDTLPIIY-ERGLFG----LYHDWCESFNTY--PRTYDLL  136 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~----~~--V~vmnv~p~~~~~~l~~i~-eRGLi~----~~~dwce~f~ty--PrtyDll  136 (223)
                      .-++|+|+|||-|++.+.+..    .+  ++.+...|.......+.+. +.|+-.    ..+|.   +...  ...||+|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da---~~~~~~l~~FDlV  199 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV---MDVTESLKEYDVV  199 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch---hhcccccCCcCEE
Confidence            568999999998877554332    23  4444444443332333332 355522    22332   2223  2789999


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH---HHH-HHHHH-HHHhCCCeeEEeecCC---CeeEEEEEec
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA---ETI-VEVED-LVKSLHWDVRMIYTND---NQGMLCVHKT  208 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~---~~~-~~i~~-i~~~l~W~~~~~~~~~---~e~~L~~~K~  208 (223)
                      -|. ++..+. +-.-+.++..+-|.|||||+++++--.   ..+ ..+.. ..+  .|++....+..   -.-+++++|.
T Consensus       200 F~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~v~Nsvi~~r~~  275 (296)
T PLN03075        200 FLA-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDEVINSVIIARKP  275 (296)
T ss_pred             EEe-cccccc-cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCCceeeEEEEEee
Confidence            998 554442 122359999999999999999999421   111 11111 122  77765443322   3678899996


Q ss_pred             c
Q 027471          209 Y  209 (223)
Q Consensus       209 ~  209 (223)
                      -
T Consensus       276 ~  276 (296)
T PLN03075        276 G  276 (296)
T ss_pred             c
Confidence            5

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.22  E-value=0.00047  Score=63.99  Aligned_cols=130  Identities=14%  Similarity=0.235  Sum_probs=67.1

Q ss_pred             hhHHHHH-hhhhhhccCCCCCCceEEEeeCCchHHH-HHHhhCC--CeEEEEecCCCCCCChhhHH-------hhC----
Q 027471           50 QHWKNVV-SKSYLNGMGINWSFVRNVMDMRAVYGGF-AAALKDL--KVWVMNVVPIESPDTLPIIY-------ERG----  114 (223)
Q Consensus        50 ~~W~~~v-~~~Y~~~l~i~~~~iRnvLDmgaG~GgF-AA~L~~~--~V~vmnv~p~~~~~~l~~i~-------eRG----  114 (223)
                      +.|.+.+ .+-|.+.+.- ...-.+||||+||=||= --+...+  .++...+++..-.+..+...       .+.    
T Consensus        42 NNwvKs~LI~~~~~~~~~-~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~  120 (331)
T PF03291_consen   42 NNWVKSVLIQKYAKKVKQ-NRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD  120 (331)
T ss_dssp             HHHHHHHHHHHHCHCCCC-TTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC
T ss_pred             hHHHHHHHHHHHHHhhhc-cCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc
Confidence            4464432 2225554432 22678999999999993 3333322  34445665543222222110       011    


Q ss_pred             ccc-ccccccccCCC-----CC---cchhhhhhhhhhccc-ccccchhHHHHhhhhcccCCcEEEEecc--HHHHHHHHH
Q 027471          115 LFG-LYHDWCESFNT-----YP---RTYDLLHADHLFSTI-KKRCSLKAVVAEVDRILRPDGNLILRDD--AETIVEVED  182 (223)
Q Consensus       115 Li~-~~~dwce~f~t-----yP---rtyDllH~~~lfs~~-~~rC~i~~vl~E~DRILRPgG~~ii~D~--~~~~~~i~~  182 (223)
                      ... .+.  +..|+.     |+   +.||+|-|...|+.. ...-....+|.-+..-|||||+||.+-+  ..++.++++
T Consensus       121 f~a~f~~--~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~  198 (331)
T PF03291_consen  121 FIAEFIA--ADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE  198 (331)
T ss_dssp             CEEEEEE--STTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred             chhheec--cccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence            122 111  223433     33   599999988666533 2333445799999999999999999933  334344443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.21  E-value=0.00032  Score=64.57  Aligned_cols=92  Identities=12%  Similarity=0.126  Sum_probs=56.1

Q ss_pred             eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhh----Ccc---cccccc-cccCCCCCcchhhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYER----GLF---GLYHDW-CESFNTYPRTYDLLHADHL  141 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eR----GLi---~~~~dw-ce~f~tyPrtyDllH~~~l  141 (223)
                      .+|||+|||+|.++..|.+++  |+.+.+++..    ++.+.+|    +.-   ....++ |..+...+.+||+|-|..+
T Consensus       146 ~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~m----l~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v  221 (315)
T PLN02585        146 VTVCDAGCGTGSLAIPLALEGAIVSASDISAAM----VAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV  221 (315)
T ss_pred             CEEEEecCCCCHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence            489999999999999999875  6666666553    3333332    110   011111 2234445789999999888


Q ss_pred             hcccccccchhHHHHhhhhcccCCcEEE
Q 027471          142 FSTIKKRCSLKAVVAEVDRILRPDGNLI  169 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~DRILRPgG~~i  169 (223)
                      +.|+.+. .+..++..+.++ .+||.+|
T Consensus       222 L~H~p~~-~~~~ll~~l~~l-~~g~liI  247 (315)
T PLN02585        222 LIHYPQD-KADGMIAHLASL-AEKRLII  247 (315)
T ss_pred             EEecCHH-HHHHHHHHHHhh-cCCEEEE
Confidence            8776542 233455666654 4555544

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.13  E-value=0.00058  Score=64.81  Aligned_cols=113  Identities=18%  Similarity=0.214  Sum_probs=64.8

Q ss_pred             eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCccc---ccccccccCCC--CC-cchhhhhhhhhhc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNT--YP-RTYDLLHADHLFS  143 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~t--yP-rtyDllH~~~lfs  143 (223)
                      ..|||+|||+|.|+.+|+++.  |..+.+++.......+-+...|+-.   ...|+-+.+..  ++ .+||+|-++    
T Consensus       299 ~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d----  374 (443)
T PRK13168        299 DRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD----  374 (443)
T ss_pred             CEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC----
Confidence            579999999999999998874  4445544443222222222335422   22232222222  32 678987665    


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEeccHHH-HHHHHHHHHhCCCeeE
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVR  192 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~-~~~i~~i~~~l~W~~~  192 (223)
                        .+|..+..++..+-+ |.|++.++++=+... ...++.+.+ --|++.
T Consensus       375 --PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~  420 (443)
T PRK13168        375 --PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLK  420 (443)
T ss_pred             --cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEE
Confidence              234444566655555 599999999955554 455665543 236553

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.08  E-value=0.00031  Score=63.61  Aligned_cols=101  Identities=16%  Similarity=0.231  Sum_probs=68.8

Q ss_pred             EEEeeCCchHHHHHHhhCC----CeEEE--EecCCCC---CCChhhHHhhCcccccccccccCCC---CCcchhhhhhhh
Q 027471           73 NVMDMRAVYGGFAAALKDL----KVWVM--NVVPIES---PDTLPIIYERGLFGLYHDWCESFNT---YPRTYDLLHADH  140 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~----~V~vm--nv~p~~~---~~~l~~i~eRGLi~~~~dwce~f~t---yPrtyDllH~~~  140 (223)
                      .+|.+|||.|.---=|.+-    ++.++  ..+|..-   ..+.+..-.|. -+.++|.|.+=..   .+.++|++-+-.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~-~afv~Dlt~~~~~~~~~~~svD~it~IF  152 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRV-EAFVWDLTSPSLKEPPEEGSVDIITLIF  152 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhh-cccceeccchhccCCCCcCccceEEEEE
Confidence            8999999999865555443    24444  3444422   11222222333 3367777665433   349999999998


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEeccHH
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE  175 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~  175 (223)
                      +||...+ -.+..+|-.+.|+|+|||.+++||--.
T Consensus       153 vLSAi~p-ek~~~a~~nl~~llKPGG~llfrDYg~  186 (264)
T KOG2361|consen  153 VLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRDYGR  186 (264)
T ss_pred             EEeccCh-HHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence            9998764 357899999999999999999996543

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.03  E-value=0.0032  Score=58.33  Aligned_cols=158  Identities=15%  Similarity=0.130  Sum_probs=95.0

Q ss_pred             HhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCC---CCChhhHHhhCccccc
Q 027471           47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIES---PDTLPIIYERGLFGLY  119 (223)
Q Consensus        47 ~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~---~~~l~~i~eRGLi~~~  119 (223)
                      -+|+.|.+.|-. -++...  +..-..++|+|||.|..+-.|...    -|+++.++++--   .++.+..--.|-+.+.
T Consensus       128 pETEE~V~~Vid-~~~~~~--~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~  204 (328)
T KOG2904|consen  128 PETEEWVEAVID-ALNNSE--HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI  204 (328)
T ss_pred             ccHHHHHHHHHH-HHhhhh--hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence            467888887765 232222  222228999999999998888765    456677776642   3466667777888877


Q ss_pred             cc--ccccCCCCC---cchhhhhhh--hhhcc-----------cc--------cccc--hhHHHHhhhhcccCCcEEEEe
Q 027471          120 HD--WCESFNTYP---RTYDLLHAD--HLFST-----------IK--------KRCS--LKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       120 ~d--wce~f~tyP---rtyDllH~~--~lfs~-----------~~--------~rC~--i~~vl~E~DRILRPgG~~ii~  171 (223)
                      |.  =.+.+.++|   ..+|++-|.  .+++.           +.        ..|.  +-.+..=.-|.|+|||++++.
T Consensus       205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le  284 (328)
T KOG2904|consen  205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE  284 (328)
T ss_pred             ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence            54  123555566   888987663  12221           00        1111  115666678999999999997


Q ss_pred             cc-----HHHHHHHHHH-HHhCCCeeEEe-ecCCCeeEEEEEe
Q 027471          172 DD-----AETIVEVEDL-VKSLHWDVRMI-YTNDNQGMLCVHK  207 (223)
Q Consensus       172 D~-----~~~~~~i~~i-~~~l~W~~~~~-~~~~~e~~L~~~K  207 (223)
                      -.     ...+..+... .+.--|.+.+. |-.+.+++++..+
T Consensus       285 ~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i~r  327 (328)
T KOG2904|consen  285 LVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVIIHR  327 (328)
T ss_pred             ecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEEEe
Confidence            22     2233443333 33334444433 3346788887665

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.02  E-value=0.0007  Score=60.02  Aligned_cols=122  Identities=16%  Similarity=0.233  Sum_probs=73.1

Q ss_pred             CCceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHH-----hhCcccccccccccCCC-CC--cchhhhhhhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIY-----ERGLFGLYHDWCESFNT-YP--RTYDLLHADH  140 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~-----eRGLi~~~~dwce~f~t-yP--rtyDllH~~~  140 (223)
                      .....+||.|||.|-....|+-.-.-.+.++....+ .++.+.     +.+-++.+.  |..+.. -|  ..||+|++.-
T Consensus        54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~-Fl~~a~~~l~~~~~~v~~~~--~~gLQ~f~P~~~~YDlIW~QW  130 (218)
T PF05891_consen   54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEK-FLEQAKEYLGKDNPRVGEFY--CVGLQDFTPEEGKYDLIWIQW  130 (218)
T ss_dssp             ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HH-HHHHHHHHTCCGGCCEEEEE--ES-GGG----TT-EEEEEEES
T ss_pred             CCcceEEecccccchhHHHHHHHhcCEeEEeccCHH-HHHHHHHHhcccCCCcceEE--ecCHhhccCCCCcEeEEEehH
Confidence            468899999999999998886664444555433332 555555     333344222  334444 34  7999999997


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEeccHH----------------HHHHHHHHHHhCCCeeEEe
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVRMI  194 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~----------------~~~~i~~i~~~l~W~~~~~  194 (223)
                      +..|+.+. .+..+|.-.-.-|||+|.+++-|+..                ....+.+|.+.=...+...
T Consensus       131 ~lghLTD~-dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~  199 (218)
T PF05891_consen  131 CLGHLTDE-DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE  199 (218)
T ss_dssp             -GGGS-HH-HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred             hhccCCHH-HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence            77777763 34466777778899999999973321                1467777877777776543

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PLN02476 O-methyltransferase

Probab=97.01  E-value=0.0011  Score=60.48  Aligned_cols=132  Identities=11%  Similarity=0.071  Sum_probs=78.7

Q ss_pred             CCceEEEeeCCchHHHHHHhhC----C-CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCCC-----Ccchh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKD----L-KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTY-----PRTYD  134 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~----~-~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~ty-----PrtyD  134 (223)
                      ..-++||++|+++|..+.+|+.    . .|+++-..|.......+.+.+-|+-.    ...|-.+.++.+     +.+||
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD  196 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD  196 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence            3468999999999999888865    2 35666554433333556666677742    222222333333     36899


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc---------H---HHHHHHHHH----HHhCCCeeEEeecCC
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD---------A---ETIVEVEDL----VKSLHWDVRMIYTND  198 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~---------~---~~~~~i~~i----~~~l~W~~~~~~~~~  198 (223)
                      ++-.+.      ++-....++...-+.|||||.+++.+.         .   .....++++    .+.=+++..+..  -
T Consensus       197 ~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llP--i  268 (278)
T PLN02476        197 FAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVP--I  268 (278)
T ss_pred             EEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEE--e
Confidence            876652      122345777788899999999999722         1   011233333    334445554332  2


Q ss_pred             CeeEEEEEec
Q 027471          199 NQGMLCVHKT  208 (223)
Q Consensus       199 ~e~~L~~~K~  208 (223)
                      .+++++++|+
T Consensus       269 gDGl~i~~K~  278 (278)
T PLN02476        269 GDGMTICRKR  278 (278)
T ss_pred             CCeeEEEEEC
Confidence            4678888874

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=96.99  E-value=0.00025  Score=64.82  Aligned_cols=103  Identities=13%  Similarity=0.157  Sum_probs=67.3

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCC-----CCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIES-----PDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~-----~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      -++|||+|||.|-..--|+..+  |..+.+++..-     +....-..+++..=.+---|...+..-..||.|-|+.++.
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevle  169 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVLE  169 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHHH
Confidence            3789999999999988888875  34344332211     1112222333321111122344444555599999999999


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEeccHHH
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDAET  176 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~  176 (223)
                      |..+-   +.++.-+-+.|+|||.+++++-...
T Consensus       170 HV~dp---~~~l~~l~~~lkP~G~lfittinrt  199 (282)
T KOG1270|consen  170 HVKDP---QEFLNCLSALLKPNGRLFITTINRT  199 (282)
T ss_pred             HHhCH---HHHHHHHHHHhCCCCceEeeehhhh
Confidence            98864   4788889999999999999966544

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.96  E-value=0.0002  Score=62.39  Aligned_cols=99  Identities=16%  Similarity=0.223  Sum_probs=53.3

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCC----C-eEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCC--
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----K-VWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYP--  130 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~-V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyP--  130 (223)
                      -++.|.+++|  -+|||+|||+|=++|.|...    + |..+-..|.-.....+.+.+.|+-.  +++.  ....-+|  
T Consensus        64 ~l~~L~l~pg--~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g--dg~~g~~~~  139 (209)
T PF01135_consen   64 MLEALDLKPG--DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVG--DGSEGWPEE  139 (209)
T ss_dssp             HHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES---GGGTTGGG
T ss_pred             HHHHHhcCCC--CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEc--chhhccccC
Confidence            4456667766  48999999999999888753    2 3333332221122233333345532  2331  1222354  


Q ss_pred             cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          131 RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       131 rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ..||.||++.         ..+.+-.++=.-|||||.+|+-
T Consensus       140 apfD~I~v~~---------a~~~ip~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  140 APFDRIIVTA---------AVPEIPEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             -SEEEEEESS---------BBSS--HHHHHTEEEEEEEEEE
T ss_pred             CCcCEEEEee---------ccchHHHHHHHhcCCCcEEEEE
Confidence            6799999972         2233334444559999999984

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.93  E-value=0.0032  Score=55.32  Aligned_cols=132  Identities=22%  Similarity=0.276  Sum_probs=86.0

Q ss_pred             EEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCC-C----hhhHHhhCccc----cccccccc-------CCCCCcchhh
Q 027471           73 NVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPD-T----LPIIYERGLFG----LYHDWCES-------FNTYPRTYDL  135 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~-~----l~~i~eRGLi~----~~~dwce~-------f~tyPrtyDl  135 (223)
                      .||.+|||+|--|++++.. +-.  .--|.|... .    ..-+.+.|+..    +.-|-+..       -+.++.+||.
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l--~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~  105 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHL--TWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA  105 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCC--EEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence            8999999999988888776 321  234555432 2    22345667643    33333322       2235689999


Q ss_pred             hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe------------------------cc---HHHHHHHHHHHHhCC
Q 027471          136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR------------------------DD---AETIVEVEDLVKSLH  188 (223)
Q Consensus       136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~------------------------D~---~~~~~~i~~i~~~l~  188 (223)
                      |-|.++++...-.| .+-++.+..|+|+|||.+++-                        |+   ..-++.|..++.+-.
T Consensus       106 i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G  184 (204)
T PF06080_consen  106 IFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG  184 (204)
T ss_pred             eeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence            99998887666444 579999999999999999986                        11   001356778888777


Q ss_pred             CeeEE-eecCCCeeEEEEEe
Q 027471          189 WDVRM-IYTNDNQGMLCVHK  207 (223)
Q Consensus       189 W~~~~-~~~~~~e~~L~~~K  207 (223)
                      ..... .+=--..++||.+|
T Consensus       185 L~l~~~~~MPANN~~Lvfrk  204 (204)
T PF06080_consen  185 LELEEDIDMPANNLLLVFRK  204 (204)
T ss_pred             CccCcccccCCCCeEEEEeC
Confidence            76531 11123568888876

The function of this family is unknown.

>PRK01581 speE spermidine synthase; Validated

Probab=96.93  E-value=0.004  Score=59.17  Aligned_cols=141  Identities=11%  Similarity=0.150  Sum_probs=75.4

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCCC-eEEEEecCCCCCCChhhHHh--------hC-c----cc-ccccccccCCCCCcc
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESPDTLPIIYE--------RG-L----FG-LYHDWCESFNTYPRT  132 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~~-V~vmnv~p~~~~~~l~~i~e--------RG-L----i~-~~~dwce~f~tyPrt  132 (223)
                      ...-++||++|||.|+.++.+.+.+ +--+-++..+. +.++++.+        +| +    +- .+.|--+-+..-++.
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp-eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~  226 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG-SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL  226 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence            3456799999999999999888763 32222233222 13333332        11 1    11 122222222233478


Q ss_pred             hhhhhhhhhhcccc---cccchhHHHHhhhhcccCCcEEEEeccHH-----HHHHHHHHHHhCCCeeEEee----c-CCC
Q 027471          133 YDLLHADHLFSTIK---KRCSLKAVVAEVDRILRPDGNLILRDDAE-----TIVEVEDLVKSLHWDVRMIY----T-NDN  199 (223)
Q Consensus       133 yDllH~~~lfs~~~---~rC~i~~vl~E~DRILRPgG~~ii~D~~~-----~~~~i~~i~~~l~W~~~~~~----~-~~~  199 (223)
                      ||+|=++. +....   .+.--..++..+.|.|+|||.++......     ....+.+.++...-.+....    + ...
T Consensus       227 YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~  305 (374)
T PRK01581        227 YDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTD  305 (374)
T ss_pred             ccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCc
Confidence            99988762 21111   11111367889999999999998874422     22233444444444443221    1 123


Q ss_pred             eeEEEEEeccc
Q 027471          200 QGMLCVHKTYW  210 (223)
Q Consensus       200 e~~L~~~K~~w  210 (223)
                      -.+.+|.|.-.
T Consensus       306 WgF~~as~~~~  316 (374)
T PRK01581        306 WGFHIAANSAY  316 (374)
T ss_pred             eEEEEEeCCcc
Confidence            67888887644

>TIGR00478 tly hemolysin TlyA family protein

Probab=96.92  E-value=0.00058  Score=60.41  Aligned_cols=110  Identities=19%  Similarity=0.258  Sum_probs=61.2

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCC---ChhhHHhhCcccc-cccccccCCCCCcchhhhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPD---TLPIIYERGLFGL-YHDWCESFNTYPRTYDLLHADHLF  142 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~---~l~~i~eRGLi~~-~~dwce~f~tyPrtyDllH~~~lf  142 (223)
                      .-.+|||+|||+|+|+..|.+++   |+.+.+.+.+-..   .-+.+-..+...+ +.+|.+..+.+ -+||+.-++   
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~-~~~DvsfiS---  150 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF-ATFDVSFIS---  150 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc-eeeeEEEee---
Confidence            45689999999999999998884   6667765532110   0000000122111 23444432222 256654443   


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEe-------------------ccHH---HHHHHHHHHHhCCCeeE
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILR-------------------DDAE---TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~-------------------D~~~---~~~~i~~i~~~l~W~~~  192 (223)
                           .+   .+|-.+.+.|+| |.+++-                   |...   .+.++...+..+.|.+.
T Consensus       151 -----~~---~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~  213 (228)
T TIGR00478       151 -----LI---SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK  213 (228)
T ss_pred             -----hH---hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence                 22   467778888888 776654                   3222   24455555677777764

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=96.84  E-value=0.0009  Score=58.13  Aligned_cols=132  Identities=15%  Similarity=0.201  Sum_probs=77.3

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCCC-----Ccchh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTY-----PRTYD  134 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~ty-----PrtyD  134 (223)
                      .+-++||.+|+++|--|.+|++-     .|+++...|....-..+.+..-|+-.    ...|..+.+++.     +++||
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            35789999999999877777632     56777665544433555556667733    334444555542     26899


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHH------------HHHHHHHH----HHhCCCeeEEeecCC
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE------------TIVEVEDL----VKSLHWDVRMIYTND  198 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~------------~~~~i~~i----~~~l~W~~~~~~~~~  198 (223)
                      +|-.+.-      +-....++..+-+.|||||.+|+++..-            ....++++    .+.=+.+..+.  .-
T Consensus       124 ~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~ll--pi  195 (205)
T PF01596_consen  124 FVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLL--PI  195 (205)
T ss_dssp             EEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEE--CS
T ss_pred             EEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEE--Ee
Confidence            9876621      2223356666669999999999983311            11123333    33334444332  23


Q ss_pred             CeeEEEEEec
Q 027471          199 NQGMLCVHKT  208 (223)
Q Consensus       199 ~e~~L~~~K~  208 (223)
                      .+++++++|+
T Consensus       196 gdGl~l~~K~  205 (205)
T PF01596_consen  196 GDGLTLARKR  205 (205)
T ss_dssp             TTEEEEEEE-
T ss_pred             CCeeEEEEEC
Confidence            5788899884

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=96.83  E-value=0.0008  Score=56.24  Aligned_cols=119  Identities=20%  Similarity=0.316  Sum_probs=62.5

Q ss_pred             hhhhHHHH--Hhhhhhhcc-----CCCCCCceEEEeeCCchH--HHHHHhh--CCCeEEEEecCCCCCCChhhHHhhCc-
Q 027471           48 DYQHWKNV--VSKSYLNGM-----GINWSFVRNVMDMRAVYG--GFAAALK--DLKVWVMNVVPIESPDTLPIIYERGL-  115 (223)
Q Consensus        48 D~~~W~~~--v~~~Y~~~l-----~i~~~~iRnvLDmgaG~G--gFAA~L~--~~~V~vmnv~p~~~~~~l~~i~eRGL-  115 (223)
                      ....|...  ..+ |+...     ......-++||++|||.|  |.+++..  ...|++-..-+  .-+.++.+.++-. 
T Consensus        17 G~~vW~aa~~La~-~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~   93 (173)
T PF10294_consen   17 GGKVWPAALVLAR-YLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGS   93 (173)
T ss_dssp             ------HHHHHHH-HHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--
T ss_pred             cEEEechHHHHHH-HHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccc
Confidence            45677543  233 56442     223446779999999888  6666666  44566555433  2223444444422 


Q ss_pred             ------ccccccccccCCC--C-CcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          116 ------FGLYHDWCESFNT--Y-PRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       116 ------i~~~~dwce~f~t--y-PrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                            --...||.+..+.  . ++.||+|-++.++-..   -..+.++.=++++|.|+|.+++..
T Consensus        94 ~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen   94 LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             ------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             cccccccCcEEEecCcccccccccccCCEEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEe
Confidence                  2266789886522  3 3789999998666432   234577778899999999988873

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02366 spermidine synthase

Probab=96.83  E-value=0.0011  Score=60.82  Aligned_cols=101  Identities=20%  Similarity=0.246  Sum_probs=57.1

Q ss_pred             CCceEEEeeCCchHHHHHHhhCCC-eEEEEecCCCCC------CChhhHHhhCc----cccccccccc-CCCCC-cchhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP------DTLPIIYERGL----FGLYHDWCES-FNTYP-RTYDL  135 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~~-V~vmnv~p~~~~------~~l~~i~eRGL----i~~~~dwce~-f~tyP-rtyDl  135 (223)
                      ..-++|||+|||.|+.++.+.+.+ |.-+-++..+..      +.++.+ ..|+    +-++..-+.. +...+ +.||+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhh-ccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            447899999999999999998873 433333333321      111111 1122    1122211111 22343 78999


Q ss_pred             hhhhhhhcccccc--cchhHHHHhhhhcccCCcEEEEe
Q 027471          136 LHADHLFSTIKKR--CSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       136 lH~~~lfs~~~~r--C~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      |-++. +......  ---..++..+-|.|+|||.++..
T Consensus       169 Ii~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        169 IIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             EEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            88752 3222111  01236788999999999999874

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=96.79  E-value=0.0015  Score=57.84  Aligned_cols=142  Identities=17%  Similarity=0.171  Sum_probs=91.8

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---ccc--cccccCCC-
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---LYH--DWCESFNT-  128 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~--dwce~f~t-  128 (223)
                      |+..| +....-++||.+|.+.|--|..|+.-     .++++-.-|.......+...+-|+-.   ++.  |+-+.++. 
T Consensus        50 ~L~~L-~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~  128 (219)
T COG4122          50 LLRLL-ARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL  128 (219)
T ss_pred             HHHHH-HHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence            55544 33446889999999988766666533     26666665555555777777778754   333  77777775 


Q ss_pred             CCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe---------cc-----HHHHHHHHHHHHhCCCeeEEe
Q 027471          129 YPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR---------DD-----AETIVEVEDLVKSLHWDVRMI  194 (223)
Q Consensus       129 yPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~---------D~-----~~~~~~i~~i~~~l~W~~~~~  194 (223)
                      ...+||+|-.+      .+.-.-+.++-+.=+.|||||.+|+.         ++     ......+..+..-+.++-+..
T Consensus       129 ~~~~fDliFID------adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (219)
T COG4122         129 LDGSFDLVFID------ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYD  202 (219)
T ss_pred             cCCCccEEEEe------CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCce
Confidence            67999997765      11334558888888999999999998         12     123344555555555543211


Q ss_pred             e--cCCCeeEEEEEec
Q 027471          195 Y--TNDNQGMLCVHKT  208 (223)
Q Consensus       195 ~--~~~~e~~L~~~K~  208 (223)
                      .  -.-.+.++++.|.
T Consensus       203 t~~lP~gDGl~v~~k~  218 (219)
T COG4122         203 TVLLPLGDGLLLSRKR  218 (219)
T ss_pred             eEEEecCCceEEEeec
Confidence            1  1134788888885

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=96.73  E-value=0.0036  Score=58.91  Aligned_cols=114  Identities=17%  Similarity=0.160  Sum_probs=65.1

Q ss_pred             eEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCC---Ccchhhhhhhhhhc
Q 027471           72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTY---PRTYDLLHADHLFS  143 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~ty---PrtyDllH~~~lfs  143 (223)
                      .+|||+|||+|.|+..|++.  .|+.+...+.......+-+...|+-.   +..|..+.++.+   +.+||+|-.+    
T Consensus       294 ~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d----  369 (431)
T TIGR00479       294 ELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD----  369 (431)
T ss_pred             CEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC----
Confidence            47999999999999999876  45555554443222222222334422   223332223332   2468876654    


Q ss_pred             ccccccc-hhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE
Q 027471          144 TIKKRCS-LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       144 ~~~~rC~-i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~  192 (223)
                        .+|-. ...++.++.+ |+|++.++++-+..++.+--+.+..-.|+..
T Consensus       370 --PPr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~  416 (431)
T TIGR00479       370 --PPRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT  416 (431)
T ss_pred             --cCCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence              12222 2355556555 8999999999777766444444444456543

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=96.68  E-value=0.0011  Score=58.54  Aligned_cols=114  Identities=15%  Similarity=0.162  Sum_probs=67.8

Q ss_pred             EEEeeCCchHHHHHHhhCCCe----EEEEecCCCCCCChhhHHhhCccc----ccccccccCCCCCcchhhhhhhhhhcc
Q 027471           73 NVMDMRAVYGGFAAALKDLKV----WVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTYPRTYDLLHADHLFST  144 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~~V----~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyPrtyDllH~~~lfs~  144 (223)
                      +|||+|||-|.+-..|++.+.    +-+.-++....=...++..+|+..    ...|.-.+ ...+.-||+||--+-|..
T Consensus        70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~DA  148 (227)
T KOG1271|consen   70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLDA  148 (227)
T ss_pred             ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCceee
Confidence            899999999999999998853    222222221111222334455543    22221111 225578888887665543


Q ss_pred             cc---c--ccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhC
Q 027471          145 IK---K--RCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSL  187 (223)
Q Consensus       145 ~~---~--rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l  187 (223)
                      ..   +  .-.+..++=-++++|+|||.|+|+.-.-+.+++.+....-
T Consensus       149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~  196 (227)
T KOG1271|consen  149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENF  196 (227)
T ss_pred             eecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcC
Confidence            22   1  1112467777899999999999997666665555554433

>PHA03411 putative methyltransferase; Provisional

Probab=96.64  E-value=0.002  Score=59.00  Aligned_cols=94  Identities=17%  Similarity=0.214  Sum_probs=60.3

Q ss_pred             eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC--cchhhhhhhhhhccc
Q 027471           72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP--RTYDLLHADHLFSTI  145 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP--rtyDllH~~~lfs~~  145 (223)
                      .+|||+|||.|.++..+.++    .|+.+.+.|.    .++.+.++ +..+ .=.|..+..++  ++||+|=++--|.+.
T Consensus        66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~----al~~Ar~n-~~~v-~~v~~D~~e~~~~~kFDlIIsNPPF~~l  139 (279)
T PHA03411         66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPE----FARIGKRL-LPEA-EWITSDVFEFESNEKFDVVISNPPFGKI  139 (279)
T ss_pred             CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHH----HHHHHHHh-CcCC-EEEECchhhhcccCCCcEEEEcCCcccc
Confidence            47999999999998887653    4666666553    44444332 2111 11123444443  789998886666542


Q ss_pred             c-----c-----------cc-chhHHHHhhhhcccCCcEEEEe
Q 027471          146 K-----K-----------RC-SLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       146 ~-----~-----------rC-~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      .     +           .| .+...+.+.-++|.|+|.+++-
T Consensus       140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            1     1           12 2468899999999999988775

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.60  E-value=0.014  Score=50.79  Aligned_cols=140  Identities=16%  Similarity=0.139  Sum_probs=83.0

Q ss_pred             ccchhHh--hhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhh--CC--CeEEEEecCCCCCCChhhHHhh-C
Q 027471           42 PEDFTAD--YQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALK--DL--KVWVMNVVPIESPDTLPIIYER-G  114 (223)
Q Consensus        42 ~~~f~~D--~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~--~~--~V~vmnv~p~~~~~~l~~i~eR-G  114 (223)
                      .+.|..|  ...=|+-|+..=+..|.+.++.  .++|+|||+|+-+-.+.  ..  .|..+---+. .-++.+.+.+| |
T Consensus         6 D~~F~~~~~~p~TK~EIRal~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~-a~~~~~~N~~~fg   82 (187)
T COG2242           6 DELFERDEGGPMTKEEIRALTLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDEE-ALELIERNAARFG   82 (187)
T ss_pred             chhhccCCCCCCcHHHHHHHHHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEEecCHH-HHHHHHHHHHHhC
Confidence            3456555  3333455554335667666665  89999999999765554  33  3444432111 11244444443 3


Q ss_pred             ccc--ccc-cccccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhCCC-
Q 027471          115 LFG--LYH-DWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHW-  189 (223)
Q Consensus       115 Li~--~~~-dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l~W-  189 (223)
                      +.+  ++. +==+.|+..| +||-+--+     -  .-.++.+|.-...-|||||.+|.. -+.+....+-+.++.+.+ 
T Consensus        83 ~~n~~vv~g~Ap~~L~~~~-~~daiFIG-----G--g~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~  154 (187)
T COG2242          83 VDNLEVVEGDAPEALPDLP-SPDAIFIG-----G--GGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR  154 (187)
T ss_pred             CCcEEEEeccchHhhcCCC-CCCEEEEC-----C--CCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence            322  111 1112333344 67755544     2  245789999999999999999997 566677777777888888 


Q ss_pred             eeE
Q 027471          190 DVR  192 (223)
Q Consensus       190 ~~~  192 (223)
                      ++.
T Consensus       155 ei~  157 (187)
T COG2242         155 EIV  157 (187)
T ss_pred             eEE
Confidence            543

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=96.59  E-value=0.0034  Score=59.57  Aligned_cols=123  Identities=17%  Similarity=0.101  Sum_probs=65.0

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcc----ccc-ccccccCCCC---Ccchhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLF----GLY-HDWCESFNTY---PRTYDLLHAD  139 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi----~~~-~dwce~f~ty---PrtyDllH~~  139 (223)
                      -.+|||++||+|+|+-+.+..   .|+.+.+++....-..+-+..-|+-    -++ .|..+.+..+   .++||+|=++
T Consensus       221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD  300 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD  300 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence            368999999999998654433   3565555444322122222223552    122 2222222222   2579998776


Q ss_pred             hhh-cccc-----cccchhHHHHhhhhcccCCcEEEEecc------HHHHHHHHHHHHhCCCeeEE
Q 027471          140 HLF-STIK-----KRCSLKAVVAEVDRILRPDGNLILRDD------AETIVEVEDLVKSLHWDVRM  193 (223)
Q Consensus       140 ~lf-s~~~-----~rC~i~~vl~E~DRILRPgG~~ii~D~------~~~~~~i~~i~~~l~W~~~~  193 (223)
                      --+ ...+     ..+....++.-.-++|+|||.++....      ....+.+.+-+..-.-++.+
T Consensus       301 PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~  366 (396)
T PRK15128        301 PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQF  366 (396)
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence            222 1111     112345666777899999999998532      22344444445544445443

>PRK03612 spermidine synthase; Provisional

Probab=96.57  E-value=0.0049  Score=60.13  Aligned_cols=120  Identities=13%  Similarity=0.150  Sum_probs=65.5

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC-eEEEEecCCCCCCChhhHHhh---------Cc----cccccccccc-CCCCCcchh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESPDTLPIIYER---------GL----FGLYHDWCES-FNTYPRTYD  134 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~-V~vmnv~p~~~~~~l~~i~eR---------GL----i~~~~dwce~-f~tyPrtyD  134 (223)
                      +-++|||+|||.|+.++.+.+++ |--+-++..+.. .++.+.+.         ++    +-+++.-+.. +...++.||
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~-vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPA-MTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHH-HHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            45789999999999999888763 222222222221 33333221         11    1122221111 223568899


Q ss_pred             hhhhhhhhccccc---ccchhHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCee
Q 027471          135 LLHADHLFSTIKK---RCSLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       135 llH~~~lfs~~~~---rC~i~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~  191 (223)
                      +|-++. ......   +=--+.++.++-|.|+|||.+++...     .+....+.+.+++....+
T Consensus       376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v  439 (521)
T PRK03612        376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT  439 (521)
T ss_pred             EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence            998862 221111   00012577889999999999999532     333445555566654543

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=96.40  E-value=0.013  Score=50.25  Aligned_cols=134  Identities=21%  Similarity=0.251  Sum_probs=79.2

Q ss_pred             HhhhhHHHHHhhhhhhccC-CCCCCceEEEeeCCchHH----HHHHhhCCCeEEEEecCCCCCCChhhHHhhCccc--cc
Q 027471           47 ADYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGG----FAAALKDLKVWVMNVVPIESPDTLPIIYERGLFG--LY  119 (223)
Q Consensus        47 ~D~~~W~~~v~~~Y~~~l~-i~~~~iRnvLDmgaG~Gg----FAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~--~~  119 (223)
                      ...+.|.+++-.+ +..+. +..... +++|+|+|-|-    +|.++-+..|+.+.-+..-..--..++.+=||-.  ++
T Consensus        26 ~~~~~~~~Hi~DS-L~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~  103 (184)
T PF02527_consen   26 DPEEIWERHILDS-LALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVI  103 (184)
T ss_dssp             SHHHHHHHHHHHH-HGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEE
T ss_pred             CHHHHHHHHHHHH-HHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEE
Confidence            3457887776552 22222 222222 69999999874    3444444455544322211111445667778864  45


Q ss_pred             ccccccCCC--CCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec---cHHHHHHHHHHHHhCCCeeE
Q 027471          120 HDWCESFNT--YPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD---DAETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       120 ~dwce~f~t--yPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D---~~~~~~~i~~i~~~l~W~~~  192 (223)
                      +   ++.+.  ++..||++-|-       .-+.+..++.-+-+.|+|||.+++--   ..+.+...++-.+.+.++..
T Consensus       104 ~---~R~E~~~~~~~fd~v~aR-------Av~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~  171 (184)
T PF02527_consen  104 N---GRAEEPEYRESFDVVTAR-------AVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL  171 (184)
T ss_dssp             E---S-HHHTTTTT-EEEEEEE-------SSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred             E---eeecccccCCCccEEEee-------hhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence            5   45555  88999998873       23567788888899999999999973   34455666666777777654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=96.35  E-value=0.0025  Score=52.33  Aligned_cols=91  Identities=14%  Similarity=0.174  Sum_probs=51.3

Q ss_pred             ceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhh----CcccccccccccCCCC--C-cchhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYER----GLFGLYHDWCESFNTY--P-RTYDLLHADHL  141 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eR----GLi~~~~dwce~f~ty--P-rtyDllH~~~l  141 (223)
                      -.+|||+|||.|.++..|+++  .|+.+.+.+.    .++.+.++    +=+-+++   +.+..+  + ..||.+=+.--
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~----~~~~~~~~~~~~~~v~ii~---~D~~~~~~~~~~~d~vi~n~P   86 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLERAARVTAIEIDPR----LAPRLREKFAAADNLTVIH---GDALKFDLPKLQPYKVVGNLP   86 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhcCCeEEEEECCHH----HHHHHHHHhccCCCEEEEE---CchhcCCccccCCCEEEECCC
Confidence            358999999999999999987  4555655443    23333222    1122333   233333  3 45787655433


Q ss_pred             hcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      |+..  ...+..++.+ . -+.++|.+++..
T Consensus        87 y~~~--~~~i~~~l~~-~-~~~~~~~l~~q~  113 (169)
T smart00650       87 YNIS--TPILFKLLEE-P-PAFRDAVLMVQK  113 (169)
T ss_pred             cccH--HHHHHHHHhc-C-CCcceEEEEEEH
Confidence            3321  2223344332 2 266999999974

>PHA03412 putative methyltransferase; Provisional

Probab=96.10  E-value=0.01  Score=53.48  Aligned_cols=92  Identities=17%  Similarity=0.180  Sum_probs=51.7

Q ss_pred             eEEEeeCCchHHHHHHhhCC-------CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCC--Ccchhhhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDL-------KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY--PRTYDLLHADHLF  142 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~-------~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~ty--PrtyDllH~~~lf  142 (223)
                      .+|||+|||+|.++.+++++       .|+.+-+.|.    .++.+. +.+.. ++=.+..|-.+  +.+||+|=|.==|
T Consensus        51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~----Al~~Ar-~n~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY  124 (241)
T PHA03412         51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT----YYKLGK-RIVPE-ATWINADALTTEFDTLFDMAISNPPF  124 (241)
T ss_pred             CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH----HHHHHH-hhccC-CEEEEcchhcccccCCccEEEECCCC
Confidence            47999999999999987643       3555544333    222222 22211 11112344333  4689997665444


Q ss_pred             cccc-----c---ccchh-HHHHhhhhcccCCcEEEE
Q 027471          143 STIK-----K---RCSLK-AVVAEVDRILRPDGNLIL  170 (223)
Q Consensus       143 s~~~-----~---rC~i~-~vl~E~DRILRPgG~~ii  170 (223)
                      ....     .   ...+. .++...-|+||||++ |+
T Consensus       125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL  160 (241)
T PHA03412        125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II  160 (241)
T ss_pred             CCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence            3211     1   12333 477777888888887 54

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=96.04  E-value=0.0053  Score=58.02  Aligned_cols=113  Identities=12%  Similarity=0.172  Sum_probs=63.6

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCC----ChhhHHhhC---ccc-ccccccccCCC-------CC
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPD----TLPIIYERG---LFG-LYHDWCESFNT-------YP  130 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~----~l~~i~eRG---Li~-~~~dwce~f~t-------yP  130 (223)
                      ..++.++|+|||-||=.-.--+-   .+....++.+.-.+    ..++-.-+-   +.. .+.  |..|..       ++
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~--~Dc~~~~l~d~~e~~  193 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIA--ADCFKERLMDLLEFK  193 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEE--eccchhHHHHhccCC
Confidence            35777999999999954333332   34556666554321    111111111   001 111  122222       34


Q ss_pred             -cchhhhhhhhhhccc-ccccchhHHHHhhhhcccCCcEEEEecc--HHHHHHHHHH
Q 027471          131 -RTYDLLHADHLFSTI-KKRCSLKAVVAEVDRILRPDGNLILRDD--AETIVEVEDL  183 (223)
Q Consensus       131 -rtyDllH~~~lfs~~-~~rC~i~~vl~E~DRILRPgG~~ii~D~--~~~~~~i~~i  183 (223)
                       ..||++-|...|+.. ..-......|.-+-+-|||||+||-|-+  ..++.+++..
T Consensus       194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG  250 (389)
T ss_pred             CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence             449999998777632 2222233678889999999999999943  4455665544

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=95.82  E-value=0.017  Score=52.14  Aligned_cols=136  Identities=19%  Similarity=0.185  Sum_probs=87.3

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCC-CCChhhHHhhCcc-----cccccccccCCCCCcchhhhhh
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIES-PDTLPIIYERGLF-----GLYHDWCESFNTYPRTYDLLHA  138 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~-~~~l~~i~eRGLi-----~~~~dwce~f~tyPrtyDllH~  138 (223)
                      |.....++|.|+|||.|..-+.|..| +.-++.-  .++ ++.+..+.+|+.-     |-+++||-     ++..||+-+
T Consensus        26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~G--iDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p-----~~~~dllfa   98 (257)
T COG4106          26 VPLERPRRVVDLGCGPGNSTELLARRWPDAVITG--IDSSPAMLAKAAQRLPDATFEEADLRTWKP-----EQPTDLLFA   98 (257)
T ss_pred             CCccccceeeecCCCCCHHHHHHHHhCCCCeEee--ccCCHHHHHHHHHhCCCCceecccHhhcCC-----CCccchhhh
Confidence            66778999999999999999999988 4333221  133 3477777777652     45667763     277899999


Q ss_pred             hhhhccccc-ccchhHHHHhhhhcccCCcEEEEe--ccHHH--HHHHHHHHHhCCCeeEEee------------------
Q 027471          139 DHLFSTIKK-RCSLKAVVAEVDRILRPDGNLILR--DDAET--IVEVEDLVKSLHWDVRMIY------------------  195 (223)
Q Consensus       139 ~~lfs~~~~-rC~i~~vl~E~DRILRPgG~~ii~--D~~~~--~~~i~~i~~~l~W~~~~~~------------------  195 (223)
                      .-+|.-..+ --.++.+|-    -|+|||.+-+.  |+.+.  -.-+.+.++..-|.....+                  
T Consensus        99 NAvlqWlpdH~~ll~rL~~----~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL  174 (257)
T COG4106          99 NAVLQWLPDHPELLPRLVS----QLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL  174 (257)
T ss_pred             hhhhhhccccHHHHHHHHH----hhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence            988886554 333334443    48999999987  44332  2345555665566543221                  


Q ss_pred             cCCCeeEEEEEecccCC
Q 027471          196 TNDNQGMLCVHKTYWRP  212 (223)
Q Consensus       196 ~~~~e~~L~~~K~~w~~  212 (223)
                      .....+|=|+.+.|-.+
T Consensus       175 a~~~~rvDiW~T~Y~h~  191 (257)
T COG4106         175 APLACRVDIWHTTYYHQ  191 (257)
T ss_pred             Ccccceeeeeeeecccc
Confidence            12246677777777665

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=95.80  E-value=0.0085  Score=55.66  Aligned_cols=125  Identities=20%  Similarity=0.304  Sum_probs=86.5

Q ss_pred             CCceEEEeeCCchHHHHH-HhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccc-cccccCCC--CC---cchhhh
Q 027471           69 SFVRNVMDMRAVYGGFAA-ALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYH-DWCESFNT--YP---RTYDLL  136 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA-~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~-dwce~f~t--yP---rtyDll  136 (223)
                      ++--.||||-||.|-.-= +|.+.     .|..-..+|.+...-.+.|.+|||-.+.. .=..+|..  |-   -.++|+
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            555569999999986321 12222     23334555555555778999999976421 00123433  33   457888


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEec--cHHHHHHHHHHHHhC----CCeeEE
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD--DAETIVEVEDLVKSL----HWDVRM  193 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D--~~~~~~~i~~i~~~l----~W~~~~  193 (223)
                      =.++||....+.-.+..-|.=+.++|.|||++|.+-  -+..++.|.+.+++.    -|-++-
T Consensus       214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRr  276 (311)
T PF12147_consen  214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRR  276 (311)
T ss_pred             EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEe
Confidence            899999999887677788889999999999999996  456778888888774    587764

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=95.78  E-value=0.0039  Score=56.60  Aligned_cols=111  Identities=14%  Similarity=0.121  Sum_probs=63.6

Q ss_pred             eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCC----Ccchhhhhhhhhhccc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY----PRTYDLLHADHLFSTI  145 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~ty----PrtyDllH~~~lfs~~  145 (223)
                      ..|||+|||+|.|+..|++++  |+.+.+.+.......+-+.+.|+.. +.=.|..+..+    +..||+|-++      
T Consensus       175 ~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~-v~~~~~D~~~~~~~~~~~~D~Vv~d------  247 (315)
T PRK03522        175 RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTN-VQFQALDSTQFATAQGEVPDLVLVN------  247 (315)
T ss_pred             CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCHHHHHHhcCCCCeEEEEC------
Confidence            679999999999999999874  5555554443333333344456521 11122233222    2468887765      


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEeccHHHH-HHHHHHHHhCCCeeE
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILRDDAETI-VEVEDLVKSLHWDVR  192 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~-~~i~~i~~~l~W~~~  192 (223)
                      .+|..+..-+.++=.-++|++.++++-+..++ ..++.+ .  -|++.
T Consensus       248 PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~  292 (315)
T PRK03522        248 PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIE  292 (315)
T ss_pred             CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEE
Confidence            33443333333333337899999999665553 445444 2  46554

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=95.71  E-value=0.0089  Score=54.48  Aligned_cols=152  Identities=18%  Similarity=0.241  Sum_probs=88.7

Q ss_pred             HhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCCCe-EEEEecCCCCCCChhhH----HhhCcc----c
Q 027471           47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKV-WVMNVVPIESPDTLPII----YERGLF----G  117 (223)
Q Consensus        47 ~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~V-~vmnv~p~~~~~~l~~i----~eRGLi----~  117 (223)
                      +.+.-|..-..+  .+..  +...--+|||.=.|.|-+|..-.+++. .|+++- + .|+-++.+    +.|||.    -
T Consensus       115 ~~tdP~~Dt~~K--v~~V--~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvE-k-dp~VLeLa~lNPwSr~l~~~~i~  188 (287)
T COG2521         115 KGTDPLEDTLAK--VELV--KVKRGERVLDTCTGLGYTAIEALERGAIHVITVE-K-DPNVLELAKLNPWSRELFEIAIK  188 (287)
T ss_pred             cCcCcHHHHHhh--hhee--ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEe-e-CCCeEEeeccCCCCccccccccE
Confidence            444555555443  3322  334456899999999999999999976 555441 0 11111111    234442    2


Q ss_pred             -ccccccccCCCCC-cchhh-hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe--cc------HHHHHHHHHHHHh
Q 027471          118 -LYHDWCESFNTYP-RTYDL-LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR--DD------AETIVEVEDLVKS  186 (223)
Q Consensus       118 -~~~dwce~f~tyP-rtyDl-lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~--D~------~~~~~~i~~i~~~  186 (223)
                       +..|--|...+|+ .+||. ||=--=||+...- =-+.+-.|+.|||||||.+.--  .+      .+....+.+-+++
T Consensus       189 iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeL-YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~  267 (287)
T COG2521         189 IILGDAYEVVKDFDDESFDAIIHDPPRFSLAGEL-YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRR  267 (287)
T ss_pred             EecccHHHHHhcCCccccceEeeCCCccchhhhH-hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHh
Confidence             3445445666788 78997 5765555544311 1136778999999999998753  11      2234556666777


Q ss_pred             CCCeeEEeecCCCeeE-EEEEec
Q 027471          187 LHWDVRMIYTNDNQGM-LCVHKT  208 (223)
Q Consensus       187 l~W~~~~~~~~~~e~~-L~~~K~  208 (223)
                      .-..+....   .|.. ++|+|+
T Consensus       268 vGF~~v~~~---~~~~gv~A~k~  287 (287)
T COG2521         268 VGFEVVKKV---REALGVVAVKP  287 (287)
T ss_pred             cCceeeeee---hhccceEEecC
Confidence            777643221   3334 666663

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=95.70  E-value=0.022  Score=55.42  Aligned_cols=101  Identities=19%  Similarity=0.238  Sum_probs=57.1

Q ss_pred             CceEEEeeCCchHHHHHHhh----CCCeEE-EEecCCCCCCChhhHHhh-Cccc--ccccccccCC-CCCcchhhhh---
Q 027471           70 FVRNVMDMRAVYGGFAAALK----DLKVWV-MNVVPIESPDTLPIIYER-GLFG--LYHDWCESFN-TYPRTYDLLH---  137 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~----~~~V~v-mnv~p~~~~~~l~~i~eR-GLi~--~~~dwce~f~-tyPrtyDllH---  137 (223)
                      .--.||||.|+.||=..+|+    +++..+ ..+.+.-. ..++-+.+| |+..  +.+.-...++ .+|..||.|-   
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa  191 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA  191 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence            34579999999999555443    345333 33432222 244555555 6533  2221111222 3667899977   


Q ss_pred             -hhh--hhccc-------c----cccc-h-hHHHHhhhhcccCCcEEEEe
Q 027471          138 -ADH--LFSTI-------K----KRCS-L-KAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       138 -~~~--lfs~~-------~----~rC~-i-~~vl~E~DRILRPgG~~ii~  171 (223)
                       |++  +|..-       .    .+|. + ..+|...-+.|||||.+|.+
T Consensus       192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS  241 (470)
T PRK11933        192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS  241 (470)
T ss_pred             CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence             542  23211       1    0111 1 17888999999999999998

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=95.57  E-value=0.059  Score=49.18  Aligned_cols=43  Identities=19%  Similarity=0.473  Sum_probs=34.0

Q ss_pred             hhHHHHhhhhcccCCcEEEEe--------cc-------HH-HHHHHHHHHHhCCCeeEE
Q 027471          151 LKAVVAEVDRILRPDGNLILR--------DD-------AE-TIVEVEDLVKSLHWDVRM  193 (223)
Q Consensus       151 i~~vl~E~DRILRPgG~~ii~--------D~-------~~-~~~~i~~i~~~l~W~~~~  193 (223)
                      +-++|..+.++|||||+||=-        +.       .+ .+++|..+++++-|+...
T Consensus       181 i~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~  239 (270)
T PF07942_consen  181 IIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK  239 (270)
T ss_pred             HHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence            448999999999999977743        32       22 378999999999999863

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=95.49  E-value=0.0058  Score=57.71  Aligned_cols=96  Identities=19%  Similarity=0.178  Sum_probs=58.5

Q ss_pred             EEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCCcchhhhhhhhhhcccc
Q 027471           73 NVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYPRTYDLLHADHLFSTIK  146 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyPrtyDllH~~~lfs~~~  146 (223)
                      -++|+|||+|+...+...-   ++.-+|..+.+....-+...-.++--   .+..|+.--++=++|||.+-+-.+--+.+
T Consensus       113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~  192 (364)
T KOG1269|consen  113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAP  192 (364)
T ss_pred             cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCC
Confidence            6789999999988877543   55555554443322222222222210   12233433344449999977653333333


Q ss_pred             cccchhHHHHhhhhcccCCcEEEEe
Q 027471          147 KRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       147 ~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      +   ...++.|+-|+|+|||+++.-
T Consensus       193 ~---~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  193 D---LEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             c---HHHHHHHHhcccCCCceEEeH
Confidence            2   358999999999999999986

>PRK04148 hypothetical protein; Provisional

Probab=95.46  E-value=0.028  Score=46.39  Aligned_cols=48  Identities=15%  Similarity=0.131  Sum_probs=35.4

Q ss_pred             CceEEEeeCCchHH-HHHHhhCCCeEE--EEecCCCCCCChhhHHhhCccccccc
Q 027471           70 FVRNVMDMRAVYGG-FAAALKDLKVWV--MNVVPIESPDTLPIIYERGLFGLYHD  121 (223)
Q Consensus        70 ~iRnvLDmgaG~Gg-FAA~L~~~~V~v--mnv~p~~~~~~l~~i~eRGLi~~~~d  121 (223)
                      +-+.++|+|||+|. +|..|.+.+..|  +.+.|.    .++.+.++|+-.+..|
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~----aV~~a~~~~~~~v~dD   66 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEK----AVEKAKKLGLNAFVDD   66 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHH----HHHHHHHhCCeEEECc
Confidence            34679999999996 999999886544  444433    5777888887666665

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=0.013  Score=51.68  Aligned_cols=100  Identities=16%  Similarity=0.191  Sum_probs=59.6

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC-CC--cchh
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT-YP--RTYD  134 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t-yP--rtyD  134 (223)
                      -.+.|.++.+  -.||++|||+|=-||-|.+.  .|..+-..+.-.....+-...-|+-. ++--|..-+. ||  .-||
T Consensus        64 m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD  140 (209)
T COG2518          64 MLQLLELKPG--DRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYD  140 (209)
T ss_pred             HHHHhCCCCC--CeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcC
Confidence            4455655555  78999999999888888776  34444332221111222234456633 2211234444 77  7899


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      .|.....+..      ++.-|+|   =|+|||.+++=
T Consensus       141 ~I~Vtaaa~~------vP~~Ll~---QL~~gGrlv~P  168 (209)
T COG2518         141 RIIVTAAAPE------VPEALLD---QLKPGGRLVIP  168 (209)
T ss_pred             EEEEeeccCC------CCHHHHH---hcccCCEEEEE
Confidence            9988733332      3344554   59999999985

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=95.35  E-value=0.011  Score=57.05  Aligned_cols=142  Identities=20%  Similarity=0.225  Sum_probs=67.8

Q ss_pred             CCCCCCCCcccccccCccCCCCccchhHhhhhHHH---HHhhhhhhccCCCCC----CceEEEeeCCchHHHHHHh----
Q 027471           20 PLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKN---VVSKSYLNGMGINWS----FVRNVMDMRAVYGGFAAAL----   88 (223)
Q Consensus        20 P~rl~~~p~rl~~~~g~~~~~~~~~f~~D~~~W~~---~v~~~Y~~~l~i~~~----~iRnvLDmgaG~GgFAA~L----   88 (223)
                      ..+|..|..=|....   .+.+.|.|++|.-+-..   -+.+ .+... ....    +--+|||+|||.|-.+.+-    
T Consensus       134 ~d~Lq~PLqPl~dnL---~s~tYe~fE~D~vKY~~Ye~AI~~-al~D~-~~~~~~~~~~~vVldVGAGrGpL~~~al~A~  208 (448)
T PF05185_consen  134 EDYLQAPLQPLMDNL---ESQTYEVFEKDPVKYDQYERAIEE-ALKDR-VRKNSYSSKDKVVLDVGAGRGPLSMFALQAG  208 (448)
T ss_dssp             ---EE----TTTS------HHHHHHHCC-HHHHHHHHHHHHH-HHHHH-HTTS-SEETT-EEEEES-TTSHHHHHHHHTT
T ss_pred             hhhccCCCCCchhhh---ccccHhhHhcCHHHHHHHHHHHHH-HHHhh-hhhccccccceEEEEeCCCccHHHHHHHHHH
Confidence            345555533344311   12357899999876643   2322 22222 1222    2467999999999874221    


Q ss_pred             --hCCCeEEEEecCCCC--CCChh-hHHhhCc---ccccccccccCCCC--CcchhhhhhhhhhcccccccchhHHHHhh
Q 027471           89 --KDLKVWVMNVVPIES--PDTLP-IIYERGL---FGLYHDWCESFNTY--PRTYDLLHADHLFSTIKKRCSLKAVVAEV  158 (223)
Q Consensus        89 --~~~~V~vmnv~p~~~--~~~l~-~i~eRGL---i~~~~dwce~f~ty--PrtyDllH~~~lfs~~~~rC~i~~vl~E~  158 (223)
                        ....+-|--| ..+.  -.+++ .+.+.|+   |-+++   +.....  |.-.|+|=+- ++........+...|.-.
T Consensus       209 ~~~~~a~~VyAV-Ekn~~A~~~l~~~v~~n~w~~~V~vi~---~d~r~v~lpekvDIIVSE-lLGsfg~nEl~pE~Lda~  283 (448)
T PF05185_consen  209 ARAGGAVKVYAV-EKNPNAVVTLQKRVNANGWGDKVTVIH---GDMREVELPEKVDIIVSE-LLGSFGDNELSPECLDAA  283 (448)
T ss_dssp             HHHCCESEEEEE-ESSTHHHHHHHHHHHHTTTTTTEEEEE---S-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHG
T ss_pred             HHhCCCeEEEEE-cCCHhHHHHHHHHHHhcCCCCeEEEEe---CcccCCCCCCceeEEEEe-ccCCccccccCHHHHHHH
Confidence              1222333323 1111  12443 3355565   43555   354543  4678887663 222222334566788999


Q ss_pred             hhcccCCcEEEEe
Q 027471          159 DRILRPDGNLILR  171 (223)
Q Consensus       159 DRILRPgG~~ii~  171 (223)
                      ||.|+|||.+|=+
T Consensus       284 ~rfLkp~Gi~IP~  296 (448)
T PF05185_consen  284 DRFLKPDGIMIPS  296 (448)
T ss_dssp             GGGEEEEEEEESS
T ss_pred             HhhcCCCCEEeCc
Confidence            9999999987743

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=95.13  E-value=0.047  Score=48.43  Aligned_cols=106  Identities=6%  Similarity=-0.037  Sum_probs=63.8

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcc--------------ccccccc
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLF--------------GLYHDWC  123 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi--------------~~~~dwc  123 (223)
                      |+..+.+..  -..||+.|||-|-=+.+|+++|  |+.+.++|.-...   +..|.|+.              +-+.=+|
T Consensus        35 ~~~~l~~~~--~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~---~~~e~~~~~~~~~~~~~~~~~~~~i~~~~  109 (226)
T PRK13256         35 HFSKLNIND--SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLS---FFSQNTINYEVIHGNDYKLYKGDDIEIYV  109 (226)
T ss_pred             HHHhcCCCC--CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHH---HHHHcCCCcceecccccceeccCceEEEE
Confidence            444444433  3589999999999999999995  5556666653221   11112211              1122234


Q ss_pred             ccCCCCC------cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          124 ESFNTYP------RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       124 e~f~tyP------rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ..|=+.+      +.||+|-=...|-.... -.-..+..-|.++|||||.+++-
T Consensus       110 gD~f~l~~~~~~~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~llll  162 (226)
T PRK13256        110 ADIFNLPKIANNLPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILLL  162 (226)
T ss_pred             ccCcCCCccccccCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence            4444433      36787655555555532 12248999999999999988763

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=94.88  E-value=0.014  Score=52.23  Aligned_cols=98  Identities=16%  Similarity=0.126  Sum_probs=58.8

Q ss_pred             CCCceEEEeeCCchHHHHHHhhC----C-CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCC------CCcc
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKD----L-KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNT------YPRT  132 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~----~-~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~t------yPrt  132 (223)
                      ...-++||.+|+++|--|.+|+.    . .|+++-.-|....-..+.+..-|+..    ...+..+.++.      ++.+
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence            34577999999988866555543    2 46666554432223555666777643    22333344433      3568


Q ss_pred             hhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          133 YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       133 yDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ||+|-.+.-    +  -....++...=+.|||||.+++.
T Consensus       157 fD~iFiDad----K--~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        157 FDFIFVDAD----K--DNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             ccEEEecCC----H--HHhHHHHHHHHHhcCCCeEEEEc
Confidence            999877622    1  11234444445899999999987

>PLN02672 methionine S-methyltransferase

Probab=94.82  E-value=0.054  Score=57.68  Aligned_cols=40  Identities=18%  Similarity=0.210  Sum_probs=30.0

Q ss_pred             hHHHHhhhhcccCCcEEEEeccHHHHHHHH-HHHHhCCCee
Q 027471          152 KAVVAEVDRILRPDGNLILRDDAETIVEVE-DLVKSLHWDV  191 (223)
Q Consensus       152 ~~vl~E~DRILRPgG~~ii~D~~~~~~~i~-~i~~~l~W~~  191 (223)
                      ..++.|.-++|+|||++++--....-+.+. +++++..|..
T Consensus       258 r~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~  298 (1082)
T PLN02672        258 ARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRI  298 (1082)
T ss_pred             HHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCe
Confidence            478999999999999999975544455666 5777655654

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.54  E-value=0.071  Score=47.00  Aligned_cols=131  Identities=15%  Similarity=0.224  Sum_probs=72.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCC-cchhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYP-RTYDLLHADHL  141 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyP-rtyDllH~~~l  141 (223)
                      .-.|+|+||--||+.-.+.++     .|..+.+.|.+....+.++  +|=+-   +..+.-+.   .+ ...|+|=|+..
T Consensus        46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~i--q~d~~~~~~~~~l~~~---l~~~~~DvV~sD~a  120 (205)
T COG0293          46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFL--QGDITDEDTLEKLLEA---LGGAPVDVVLSDMA  120 (205)
T ss_pred             CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEE--eeeccCccHHHHHHHH---cCCCCcceEEecCC
Confidence            467999999999997766554     3788888888765332211  11110   00000011   22 11344333211


Q ss_pred             hc--------ccccccchhHHHHhhhh-cccCCcEEEEe-----ccHHHHHHHHHHHHhCCCeeEEe-ecCCCeeEEEEE
Q 027471          142 FS--------TIKKRCSLKAVVAEVDR-ILRPDGNLILR-----DDAETIVEVEDLVKSLHWDVRMI-YTNDNQGMLCVH  206 (223)
Q Consensus       142 fs--------~~~~rC~i~~vl~E~DR-ILRPgG~~ii~-----D~~~~~~~i~~i~~~l~W~~~~~-~~~~~e~~L~~~  206 (223)
                      =.        +... -.+..+.+|+-. +|+|||-|+.-     +..+.+..+++.++.++=..-.. -.+..|-+++|.
T Consensus       121 p~~~g~~~~Dh~r~-~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~  199 (205)
T COG0293         121 PNTSGNRSVDHARS-MYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAK  199 (205)
T ss_pred             CCcCCCccccHHHH-HHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCccccCCCceEEEEEe
Confidence            10        0000 112255666654 99999999986     55667788888877765443211 134579999987


Q ss_pred             e
Q 027471          207 K  207 (223)
Q Consensus       207 K  207 (223)
                      +
T Consensus       200 ~  200 (205)
T COG0293         200 G  200 (205)
T ss_pred             c
Confidence            5

>PRK00536 speE spermidine synthase; Provisional

Probab=94.46  E-value=0.11  Score=47.03  Aligned_cols=96  Identities=15%  Similarity=0.062  Sum_probs=59.1

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCC---CCChhhHHhhCc----ccccccccccCCCCCcchhhh
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIES---PDTLPIIYERGL----FGLYHDWCESFNTYPRTYDLL  136 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~---~~~l~~i~eRGL----i~~~~dwce~f~tyPrtyDll  136 (223)
                      +...+-++||=+|.|-||.++.+.+.+  |+.+.+-+.--   ...++.+. .++    +.++- +  ......++||+|
T Consensus        68 ~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~-~~~~DpRv~l~~-~--~~~~~~~~fDVI  143 (262)
T PRK00536         68 CTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFH-EVKNNKNFTHAK-Q--LLDLDIKKYDLI  143 (262)
T ss_pred             hhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHH-HhhcCCCEEEee-h--hhhccCCcCCEE
Confidence            345678999999999999999999986  44333311100   01222211 122    11111 1  111134789998


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      =++.+|+        +.....+.|.|+|||.++..-.
T Consensus       144 IvDs~~~--------~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        144 ICLQEPD--------IHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             EEcCCCC--------hHHHHHHHHhcCCCcEEEECCC
Confidence            8886655        2455678999999999999743

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=94.45  E-value=0.047  Score=48.96  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=18.4

Q ss_pred             HHHHhhhhcccCCcEEEEeccH
Q 027471          153 AVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       153 ~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      .+|.|..=+||+||.++...+.
T Consensus       164 ~l~~eyay~l~~gg~~ytitDv  185 (249)
T KOG3115|consen  164 TLLSEYAYVLREGGILYTITDV  185 (249)
T ss_pred             hHHHHHHhhhhcCceEEEEeeH
Confidence            7899999999999999775443

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=94.43  E-value=0.034  Score=52.01  Aligned_cols=108  Identities=12%  Similarity=0.121  Sum_probs=59.6

Q ss_pred             eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcc--cccccccccCCCC----Ccchhhhhhhhhhc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLF--GLYHDWCESFNTY----PRTYDLLHADHLFS  143 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi--~~~~dwce~f~ty----PrtyDllH~~~lfs  143 (223)
                      ++|||++||+|.|+..|+.++  |+.+-+.|.......+-+...|+-  -.+.   ..+..+    ...||+|-++    
T Consensus       235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~---~d~~~~~~~~~~~~D~vi~D----  307 (374)
T TIGR02085       235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAA---LDSAKFATAQMSAPELVLVN----  307 (374)
T ss_pred             CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEE---CCHHHHHHhcCCCCCEEEEC----
Confidence            589999999999999998774  444444433222122222233431  1121   121111    1347776665    


Q ss_pred             ccccccchh-HHHHhhhhcccCCcEEEEeccHHHH-HHHHHHHHhCCCeeE
Q 027471          144 TIKKRCSLK-AVVAEVDRILRPDGNLILRDDAETI-VEVEDLVKSLHWDVR  192 (223)
Q Consensus       144 ~~~~rC~i~-~vl~E~DRILRPgG~~ii~D~~~~~-~~i~~i~~~l~W~~~  192 (223)
                        .+|..+. .++..+. -++|++.++++-+..++ ..++.+   -.|++.
T Consensus       308 --PPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~  352 (374)
T TIGR02085       308 --PPRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIE  352 (374)
T ss_pred             --CCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence              2343322 4434443 37999999999666654 556665   246654

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=94.31  E-value=0.063  Score=46.99  Aligned_cols=126  Identities=17%  Similarity=0.242  Sum_probs=72.7

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhH-HhhCccccc--------------ccc
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPII-YERGLFGLY--------------HDW  122 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i-~eRGLi~~~--------------~dw  122 (223)
                      |++.++.  ..-..||+-|||.|--+.+|+++|  |+.+.++|.    .++.. .++++-...              .=+
T Consensus        29 ~~~~l~~--~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~----Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~  102 (218)
T PF05724_consen   29 YLDSLAL--KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPT----AIEQAFEENNLEPTVTSVGGFKRYQAGRITIY  102 (218)
T ss_dssp             HHHHHTT--STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HH----HHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred             HHHhcCC--CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHH----HHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence            5555443  334579999999999999999996  444555554    33333 345541111              112


Q ss_pred             cccCCCCC----cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEE-Ee-c-------cHH---HHHHHHHHHHh
Q 027471          123 CESFNTYP----RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLI-LR-D-------DAE---TIVEVEDLVKS  186 (223)
Q Consensus       123 ce~f~tyP----rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~i-i~-D-------~~~---~~~~i~~i~~~  186 (223)
                      |..|=.++    +.||+|.=-..|..+. ...-+.+..=|.++|+|||.++ ++ +       -..   ..++|+.++. 
T Consensus       103 ~gDfF~l~~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-  180 (218)
T PF05724_consen  103 CGDFFELPPEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-  180 (218)
T ss_dssp             ES-TTTGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-
T ss_pred             EcccccCChhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-
Confidence            33333322    3577765444443332 1233588999999999999943 33 1       011   2467888877 


Q ss_pred             CCCeeEE
Q 027471          187 LHWDVRM  193 (223)
Q Consensus       187 l~W~~~~  193 (223)
                      -.|++..
T Consensus       181 ~~f~i~~  187 (218)
T PF05724_consen  181 PGFEIEE  187 (218)
T ss_dssp             TTEEEEE
T ss_pred             CCcEEEE
Confidence            7777653

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=94.00  E-value=0.028  Score=48.54  Aligned_cols=120  Identities=8%  Similarity=0.035  Sum_probs=57.3

Q ss_pred             hhHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHh-hCc--ccc
Q 027471           45 FTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYE-RGL--FGL  118 (223)
Q Consensus        45 f~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~e-RGL--i~~  118 (223)
                      +...+..-++.+-+ ++...  ..+  .+|||++||+|.++..++.++   |..+-..|.-.. .++.+++ -|+  +-+
T Consensus        33 ~Rp~~d~v~e~l~~-~l~~~--~~~--~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~-~a~~Nl~~~~~~~v~~  106 (199)
T PRK10909         33 LRPTTDRVRETLFN-WLAPV--IVD--ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQ-QLIKNLATLKAGNARV  106 (199)
T ss_pred             cCcCCHHHHHHHHH-HHhhh--cCC--CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHH-HHHHHHHHhCCCcEEE
Confidence            44455555555554 33211  122  379999999999997544342   333322222111 1111111 233  112


Q ss_pred             c-ccccccCCCCCcchhhhhhhhhhcccccccchhHHHHhh--hhcccCCcEEEEeccH
Q 027471          119 Y-HDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEV--DRILRPDGNLILRDDA  174 (223)
Q Consensus       119 ~-~dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~--DRILRPgG~~ii~D~~  174 (223)
                      + .|..+.++.....||+|=++-=|..   .+ .+.++.-+  ..+|.|+|.+++.-..
T Consensus       107 ~~~D~~~~l~~~~~~fDlV~~DPPy~~---g~-~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        107 VNTNALSFLAQPGTPHNVVFVDPPFRK---GL-LEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             EEchHHHHHhhcCCCceEEEECCCCCC---Ch-HHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            2 2322222222256898877644321   11 12232222  3568999999998544

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=93.59  E-value=0.023  Score=42.79  Aligned_cols=94  Identities=17%  Similarity=0.123  Sum_probs=32.9

Q ss_pred             EeeCCchHHHHHHhhCC----C-eEEEEecCCCC-CCChhhHHhhCcccccccccccCCC----CC-cchhhhhhhhhhc
Q 027471           75 MDMRAVYGGFAAALKDL----K-VWVMNVVPIES-PDTLPIIYERGLFGLYHDWCESFNT----YP-RTYDLLHADHLFS  143 (223)
Q Consensus        75 LDmgaG~GgFAA~L~~~----~-V~vmnv~p~~~-~~~l~~i~eRGLi~~~~dwce~f~t----yP-rtyDllH~~~lfs  143 (223)
                      |.+|+..|..+..|.+-    + ..+..+-+... +...+.+.+.|+...++=.+..++.    ++ +.||++|-++-  
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~--   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD--   78 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence            46788888877776542    3 13344433331 2233344445665544433344433    66 88999887621  


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      |.  ......-+..+-+.|+|||.+++.|
T Consensus        79 H~--~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   79 HS--YEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            11  1223355666777899999999976

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=93.44  E-value=0.11  Score=46.41  Aligned_cols=38  Identities=18%  Similarity=0.235  Sum_probs=27.8

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCC
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPI  101 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~  101 (223)
                      +.+.+..+  .+|||+|||+|.++.+|+++  .|+++.+.+.
T Consensus        36 ~~l~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~   75 (272)
T PRK00274         36 DAAGPQPG--DNVLEIGPGLGALTEPLLERAAKVTAVEIDRD   75 (272)
T ss_pred             HhcCCCCc--CeEEEeCCCccHHHHHHHHhCCcEEEEECCHH
Confidence            34444443  57999999999999999887  4666666544

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=93.40  E-value=0.26  Score=44.96  Aligned_cols=115  Identities=17%  Similarity=0.177  Sum_probs=66.7

Q ss_pred             cCCCCCCceEEEeeCCchHHHHHHhh----CC-CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCCCCcchh
Q 027471           64 MGINWSFVRNVMDMRAVYGGFAAALK----DL-KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTYPRTYD  134 (223)
Q Consensus        64 l~i~~~~iRnvLDmgaG~GgFAA~L~----~~-~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyPrtyD  134 (223)
                      ++|..|  -.|||.|.|.|.++++|+    +. .|+..-.-+....-.++-+-+-||.-    ...|-|+..  ++..||
T Consensus        90 ~gi~pg--~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~--~~~~vD  165 (256)
T COG2519          90 LGISPG--SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI--DEEDVD  165 (256)
T ss_pred             cCCCCC--CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc--cccccC
Confidence            345554  579999999999999998    33 46666553332221222222226654    223433332  334666


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhCCCe
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHWD  190 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l~W~  190 (223)
                      .+-.+     ..+   --.+|--++.+|+|||.+++= -..+.+.+.-.-++..+|.
T Consensus       166 av~LD-----mp~---PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~  214 (256)
T COG2519         166 AVFLD-----LPD---PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV  214 (256)
T ss_pred             EEEEc-----CCC---hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence            55443     221   128889999999999999775 4444444444444444664

>PLN02823 spermine synthase

Probab=93.05  E-value=0.13  Score=48.11  Aligned_cols=101  Identities=17%  Similarity=0.216  Sum_probs=54.5

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHhh------Cc----ccccc-cccccCCCCCcchhhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYER------GL----FGLYH-DWCESFNTYPRTYDLL  136 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~eR------GL----i~~~~-dwce~f~tyPrtyDll  136 (223)
                      ..-++||-+|+|.|+.++.+.+. ++--+.++..+.. -++++.+.      ++    +-++. |=-+-+..-++.||+|
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~-vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI  180 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE-VVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI  180 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH-HHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence            35689999999999999988775 3433333333332 22222211      11    11111 1011112234789998


Q ss_pred             hhhhhhccccc-ccc---hhHHHH-hhhhcccCCcEEEEe
Q 027471          137 HADHLFSTIKK-RCS---LKAVVA-EVDRILRPDGNLILR  171 (223)
Q Consensus       137 H~~~lfs~~~~-rC~---i~~vl~-E~DRILRPgG~~ii~  171 (223)
                      =++ ++..... .|.   -..++. .+.|.|+|||.+++.
T Consensus       181 i~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        181 IGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             Eec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            876 3332111 120   114455 689999999999875

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=92.82  E-value=0.11  Score=48.34  Aligned_cols=110  Identities=15%  Similarity=0.214  Sum_probs=56.9

Q ss_pred             EEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcc--cccc-c---ccccCCC---CC---------cc
Q 027471           73 NVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLF--GLYH-D---WCESFNT---YP---------RT  132 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi--~~~~-d---wce~f~t---yP---------rt  132 (223)
                      .|||++||+|.|+-+|.+.  .|+.+-..+.......+-+...|+-  .++. |   +...+..   ++         ..
T Consensus       200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (353)
T TIGR02143       200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYN  279 (353)
T ss_pred             cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccCC
Confidence            3999999999999999875  4555555443322222222223431  1111 1   1100000   00         01


Q ss_pred             hhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHH-HHHHHHHHHhCCCeeE
Q 027471          133 YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVR  192 (223)
Q Consensus       133 yDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~-~~~i~~i~~~l~W~~~  192 (223)
                      ||+|-.+      .+|..+..-++  +.|++|++.++++=+..+ ...++.+.+.  |++.
T Consensus       280 ~d~v~lD------PPR~G~~~~~l--~~l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~  330 (353)
T TIGR02143       280 CSTIFVD------PPRAGLDPDTC--KLVQAYERILYISCNPETLKANLEQLSET--HRVE  330 (353)
T ss_pred             CCEEEEC------CCCCCCcHHHH--HHHHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEE
Confidence            4444333      23544332222  345669999999955555 4567766655  7654

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=92.44  E-value=0.14  Score=47.06  Aligned_cols=97  Identities=16%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             CceEEEeeCCchHHHHHHhhCCCe---EEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCCcchhhhhhhhhhcc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLKV---WVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHADHLFST  144 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~V---~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDllH~~~lfs~  144 (223)
                      ..-.++|+||+.|..++.|+..+|   +.|..+--... .-+-+.+-++.-  .+.| -|-+++-.+++|||-++ +=.|
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~-s~~~~qdp~i~~~~~v~D-EE~Ldf~ens~DLiisS-lslH  148 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIK-SCRDAQDPSIETSYFVGD-EEFLDFKENSVDLIISS-LSLH  148 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHH-HhhccCCCceEEEEEecc-hhcccccccchhhhhhh-hhhh
Confidence            467899999999999999999976   33443222111 111122234433  2333 13334344999998876 3335


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEe
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      |.+.  ++.-|.-.--+|+|.|.||-+
T Consensus       149 W~Nd--LPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  149 WTND--LPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hhcc--CchHHHHHHHhcCCCccchhH
Confidence            6653  456677888899999999987

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.08  E-value=0.11  Score=44.85  Aligned_cols=41  Identities=24%  Similarity=0.424  Sum_probs=35.1

Q ss_pred             CcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          130 PRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       130 PrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      |++.|+|-|.++..|..-+. -...+.|-.|+|||||++-+.
T Consensus        45 dns~d~iyaeHvlEHlt~~E-g~~alkechr~Lrp~G~LriA   85 (185)
T COG4627          45 DNSVDAIYAEHVLEHLTYDE-GTSALKECHRFLRPGGKLRIA   85 (185)
T ss_pred             CcchHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCcCcEEEEE
Confidence            49999999999999877532 337899999999999999887

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=91.50  E-value=1  Score=40.23  Aligned_cols=126  Identities=12%  Similarity=0.145  Sum_probs=75.4

Q ss_pred             eEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhccccccc
Q 027471           72 RNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKRC  149 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~~rC  149 (223)
                      =++||+||=....+..-..- +|+.+.+-|.+..-.-|=-++|           ++|+=+ ..||+|.|+.|+....+--
T Consensus        53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~r-----------plp~~~~e~FdvIs~SLVLNfVP~p~  121 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMER-----------PLPKNESEKFDVISLSLVLNFVPDPK  121 (219)
T ss_pred             ceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccC-----------CCCCCcccceeEEEEEEEEeeCCCHH
Confidence            46999999844433322211 5777777663322111111222           233333 6899999998887655321


Q ss_pred             chhHHHHhhhhcccCCcE-----EEEeccHH--------HHHHHHHHHHhCCCeeEEeecCCCeeEEEEEec
Q 027471          150 SLKAVVAEVDRILRPDGN-----LILRDDAE--------TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT  208 (223)
Q Consensus       150 ~i~~vl~E~DRILRPgG~-----~ii~D~~~--------~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K~  208 (223)
                      .--..+.=..+.|||+|.     +.|--+..        ..+.++.|+.+|...........+=.+..++|+
T Consensus       122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~~  193 (219)
T PF11968_consen  122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRKS  193 (219)
T ss_pred             HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEeec
Confidence            223667778899999999     55542222        136888999999999865544445555556653

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=91.47  E-value=0.15  Score=45.91  Aligned_cols=119  Identities=15%  Similarity=0.240  Sum_probs=63.6

Q ss_pred             ccCCCCCCceEEEeeCCchHHHHHHhhC----C-CeEEEEecCCCCCCChhhHHhhCccc----ccccccc-cCCC-CCc
Q 027471           63 GMGINWSFVRNVMDMRAVYGGFAAALKD----L-KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCE-SFNT-YPR  131 (223)
Q Consensus        63 ~l~i~~~~iRnvLDmgaG~GgFAA~L~~----~-~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce-~f~t-yPr  131 (223)
                      .|+|.+|  ..|++-|.|.|++..+|+.    . .|...-+-+.-.....+-+.+-||..    ...|.|+ -|.. ...
T Consensus        35 ~l~i~pG--~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~  112 (247)
T PF08704_consen   35 RLDIRPG--SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELES  112 (247)
T ss_dssp             HTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TT
T ss_pred             HcCCCCC--CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccC
Confidence            4456665  5799999999999988874    3 35555442111111233334556643    3557773 3532 335


Q ss_pred             chhhhhhhhhhcccccccchhHHHHhhhhcc-cCCcEEEE-eccHHHHHHHHHHHHhCCCee
Q 027471          132 TYDLLHADHLFSTIKKRCSLKAVVAEVDRIL-RPDGNLIL-RDDAETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       132 tyDllH~~~lfs~~~~rC~i~~vl~E~DRIL-RPgG~~ii-~D~~~~~~~i~~i~~~l~W~~  191 (223)
                      .+|.+..     ...+-   -.++--+.++| ||||.+.. +-..+.+.+.-.-++...|.-
T Consensus       113 ~~DavfL-----Dlp~P---w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~  166 (247)
T PF08704_consen  113 DFDAVFL-----DLPDP---WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD  166 (247)
T ss_dssp             SEEEEEE-----ESSSG---GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred             cccEEEE-----eCCCH---HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence            6664433     33321   26777888999 99999855 555555544444455566754

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=91.40  E-value=2  Score=41.01  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=52.5

Q ss_pred             CceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCC--Ccchhhhhhhhhhccccc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY--PRTYDLLHADHLFSTIKK  147 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~ty--PrtyDllH~~~lfs~~~~  147 (223)
                      .-.++||+||..|||.-.|.+++.-|..|   |....-+.+.+-+.+-.+..  ..|..-  ++.+|++-|+-       
T Consensus       211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AV---D~g~l~~~L~~~~~V~h~~~--d~fr~~p~~~~vDwvVcDm-------  278 (357)
T PRK11760        211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAV---DNGPMAQSLMDTGQVEHLRA--DGFKFRPPRKNVDWLVCDM-------  278 (357)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCEEEEE---echhcCHhhhCCCCEEEEec--cCcccCCCCCCCCEEEEec-------
Confidence            45689999999999999999998554444   21111122233333221111  133333  36789888872       


Q ss_pred             ccchhHHHHhhhhcccCC--cEEEEe
Q 027471          148 RCSLKAVVAEVDRILRPD--GNLILR  171 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPg--G~~ii~  171 (223)
                      .|.-..+..=|-+-|..|  ..+|+.
T Consensus       279 ve~P~rva~lm~~Wl~~g~cr~aIfn  304 (357)
T PRK11760        279 VEKPARVAELMAQWLVNGWCREAIFN  304 (357)
T ss_pred             ccCHHHHHHHHHHHHhcCcccEEEEE
Confidence            233335555566666655  578887

>TIGR00755 ksgA dimethyladenosine transferase

Probab=91.03  E-value=0.22  Score=43.67  Aligned_cols=30  Identities=17%  Similarity=0.165  Sum_probs=23.5

Q ss_pred             CceEEEeeCCchHHHHHHhhCC--CeEEEEec
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL--KVWVMNVV   99 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~   99 (223)
                      .-.+|||+|||.|.+++.|.++  .|+++.+.
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d   60 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRAKKVTAIEID   60 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECC
Confidence            3568999999999999999887  44555443

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=90.83  E-value=0.16  Score=46.57  Aligned_cols=42  Identities=17%  Similarity=0.369  Sum_probs=35.0

Q ss_pred             cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          131 RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       131 rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      ..||+|-|-++|.+... -....++..+.+.|+|||++++-..
T Consensus       222 ~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG~L~lG~s  263 (287)
T PRK10611        222 GPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDGLLFAGHS  263 (287)
T ss_pred             CCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            88999999999877643 2346999999999999999988643

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=90.75  E-value=1.3  Score=39.15  Aligned_cols=137  Identities=15%  Similarity=0.178  Sum_probs=81.0

Q ss_pred             HhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHH--HhhCCCeEEEEecCCCCCC---ChhhHHhhCccc--cc
Q 027471           47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAA--ALKDLKVWVMNVVPIESPD---TLPIIYERGLFG--LY  119 (223)
Q Consensus        47 ~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA--~L~~~~V~vmnv~p~~~~~---~l~~i~eRGLi~--~~  119 (223)
                      ...+.|.+++-. =+.........-.+++|+|+|-|-=+-  |+...++- +.++.....+   -.+++.|=||..  ++
T Consensus        45 ~~~e~~~rHilD-Sl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~-vtLles~~Kk~~FL~~~~~eL~L~nv~i~  122 (215)
T COG0357          45 DPEELWQRHILD-SLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLK-VTLLESLGKKIAFLREVKKELGLENVEIV  122 (215)
T ss_pred             CHHHHHHHHHHH-HhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCc-EEEEccCchHHHHHHHHHHHhCCCCeEEe
Confidence            456788877754 121111111114789999999885222  23333333 3344444432   445667778863  55


Q ss_pred             ccccccCCCCC--cc-hhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEE---eccHHHHHHHHHHHHhCCCeeEE
Q 027471          120 HDWCESFNTYP--RT-YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLIL---RDDAETIVEVEDLVKSLHWDVRM  193 (223)
Q Consensus       120 ~dwce~f~tyP--rt-yDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii---~D~~~~~~~i~~i~~~l~W~~~~  193 (223)
                      |   ++-++|.  .. ||++-|-       .-+++..++.=.-..|++||.++.   .--.+.+.++++-.....+.+..
T Consensus       123 ~---~RaE~~~~~~~~~D~vtsR-------Ava~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~  192 (215)
T COG0357         123 H---GRAEEFGQEKKQYDVVTSR-------AVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEK  192 (215)
T ss_pred             h---hhHhhcccccccCcEEEee-------hccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEE
Confidence            5   5666666  23 9998873       124455555556788999998753   34455667777777888787764


Q ss_pred             ee
Q 027471          194 IY  195 (223)
Q Consensus       194 ~~  195 (223)
                      ..
T Consensus       193 ~~  194 (215)
T COG0357         193 VF  194 (215)
T ss_pred             EE
Confidence            43

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=90.60  E-value=0.14  Score=48.53  Aligned_cols=91  Identities=16%  Similarity=0.219  Sum_probs=51.8

Q ss_pred             eEEEeeCCchHHHHHHhhCC-C---eEEEEecCCCCCCChhhHHh-hCccc--cccccccc-CCCCCcchhhhhhhhhhc
Q 027471           72 RNVMDMRAVYGGFAAALKDL-K---VWVMNVVPIESPDTLPIIYE-RGLFG--LYHDWCES-FNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~-~---V~vmnv~p~~~~~~l~~i~e-RGLi~--~~~dwce~-f~tyPrtyDllH~~~lfs  143 (223)
                      .+|||+.||+|.|+..++.. +   |+...+.|.-.. ..+.+.+ -|+-.  +++.-++. ++. ...||+|..+- | 
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~-~a~~N~~~N~~~~~~v~~~Da~~~l~~-~~~fD~V~lDP-~-  134 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVE-LIKKNLELNGLENEKVFNKDANALLHE-ERKFDVVDIDP-F-  134 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHH-HHHHHHHHhCCCceEEEhhhHHHHHhh-cCCCCEEEECC-C-
Confidence            36999999999999998543 4   565555443222 2222222 23322  22211111 111 45699988862 3 


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                          .+. ..++-..-+.+||||.+.++
T Consensus       135 ----Gs~-~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 ----GSP-APFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             ----CCc-HHHHHHHHHHhcCCCEEEEE
Confidence                222 24444445778999999998

>PRK13699 putative methylase; Provisional

Probab=90.36  E-value=0.73  Score=40.45  Aligned_cols=58  Identities=14%  Similarity=0.141  Sum_probs=34.2

Q ss_pred             hhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE--Ee-e----------cCCCeeEEEEEec
Q 027471          151 LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR--MI-Y----------TNDNQGMLCVHKT  208 (223)
Q Consensus       151 i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~--~~-~----------~~~~e~~L~~~K~  208 (223)
                      ++.++.|+.|||+|||.+++--....+..+...++...|...  +. +          +...|-++++.|.
T Consensus        51 ~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~~~IiW~K~~~~~~~~~~~~~E~i~~~~k~  121 (227)
T PRK13699         51 LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYILAKG  121 (227)
T ss_pred             HHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEeeEEEEECCCCCCCCCCccceeEEEEEECC
Confidence            357899999999999999863222223334444444444432  10 0          1234777777775

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=90.33  E-value=0.13  Score=44.57  Aligned_cols=121  Identities=18%  Similarity=0.264  Sum_probs=62.5

Q ss_pred             hhHhhhhHHHHHhhhhh-hccC-CCCCCceEEEeeCCchH----HHHHHhhC-----C----CeEEEEecCCCCCCChhh
Q 027471           45 FTADYQHWKNVVSKSYL-NGMG-INWSFVRNVMDMRAVYG----GFAAALKD-----L----KVWVMNVVPIESPDTLPI  109 (223)
Q Consensus        45 f~~D~~~W~~~v~~~Y~-~~l~-i~~~~iRnvLDmgaG~G----gFAA~L~~-----~----~V~vmnv~p~~~~~~l~~  109 (223)
                      |=-|..+|..-..+ .+ ..+. ...+.-=+|...||++|    +.|-.|.+     .    .|+...+.+.    .++.
T Consensus         5 FFRd~~~f~~l~~~-vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~----~L~~   79 (196)
T PF01739_consen    5 FFRDPEQFEALRDE-VLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPS----ALEK   79 (196)
T ss_dssp             TTTTTTHHHHHHHH-HH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HH----HHHH
T ss_pred             ccCCHHHHHHHHHH-HHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHH----HHHH
Confidence            55667778777665 44 2332 23345667999999999    45555555     1    2233333221    1221


Q ss_pred             HHh---------hCccc---------------------------ccccccccCCCCCcchhhhhhhhhhcccccccchhH
Q 027471          110 IYE---------RGLFG---------------------------LYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKA  153 (223)
Q Consensus       110 i~e---------RGLi~---------------------------~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~~  153 (223)
                       +.         |+++.                           ..||.++ ....+.-||+|-|-+++-.... -....
T Consensus        80 -Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~-~~~~~  156 (196)
T PF01739_consen   80 -ARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDP-ETQQR  156 (196)
T ss_dssp             -HHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-H-HHHHH
T ss_pred             -HHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCH-HHHHH
Confidence             11         12211                           2344443 2223488999999999886653 23468


Q ss_pred             HHHhhhhcccCCcEEEEecc
Q 027471          154 VVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       154 vl~E~DRILRPgG~~ii~D~  173 (223)
                      ++--+.+.|+|||++++-..
T Consensus       157 vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  157 VLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             HHHHHGGGEEEEEEEEE-TT
T ss_pred             HHHHHHHHcCCCCEEEEecC
Confidence            99999999999999999744

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.26  E-value=1.1  Score=40.58  Aligned_cols=112  Identities=28%  Similarity=0.402  Sum_probs=69.5

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCC-----CCChhhHHhhCcccccccccccCCCCCcchhhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIES-----PDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHL  141 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~-----~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~l  141 (223)
                      +-+++||+|+-+|||--.|.+++   |.++.|.--+-     .+-+-+.+||==+--+..  +.   +..-.|++-|+-.
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~--~~---~~~~~d~~v~DvS  153 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTP--ED---FTEKPDLIVIDVS  153 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCH--HH---cccCCCeEEEEee
Confidence            47899999999999999999984   66666633111     111112222211100000  00   1224567777644


Q ss_pred             hcccccccchhHHHHhhhhcccCCcEEEEe-------------------cc---HHHHHHHHHHHHhCCCeeE
Q 027471          142 FSTIKKRCSLKAVVAEVDRILRPDGNLILR-------------------DD---AETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~-------------------D~---~~~~~~i~~i~~~l~W~~~  192 (223)
                      |-      ++..+|-.+..+|.|+|.++.-                   |+   ..++.++++.++...|.+.
T Consensus       154 FI------SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~  220 (245)
T COG1189         154 FI------SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK  220 (245)
T ss_pred             hh------hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence            42      2347888999999999988876                   33   2346788889999999986

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=89.95  E-value=0.39  Score=42.40  Aligned_cols=30  Identities=17%  Similarity=0.326  Sum_probs=23.8

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecC
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVP  100 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p  100 (223)
                      -.+|||+|||.|.++..|.+++  |+++.+.+
T Consensus        30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~   61 (258)
T PRK14896         30 GDPVLEIGPGKGALTDELAKRAKKVYAIELDP   61 (258)
T ss_pred             cCeEEEEeCccCHHHHHHHHhCCEEEEEECCH
Confidence            4689999999999999999874  55555543

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=89.87  E-value=0.84  Score=43.24  Aligned_cols=97  Identities=16%  Similarity=0.219  Sum_probs=68.1

Q ss_pred             CceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccccc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK  147 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~  147 (223)
                      .+...+|+|+|.|.-...+..+  .|-.+|+.....-.+.+...    +|+=|--|.-|-.-| .=|+|.+.-+.++|.+
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtD  251 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTD  251 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc----CCcceecccccccCC-CcCeEEEEeecccCCh
Confidence            6899999999999999988776  46667774332222222222    334444455676644 3459999999999986


Q ss_pred             c-cchhHHHHhhhhcccCCcEEEEecc
Q 027471          148 R-CSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       148 r-C~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      . |  ..+|.=.---|+|||.+|+-|.
T Consensus       252 edc--vkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  252 EDC--VKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             HHH--HHHHHHHHHhCCCCCEEEEEec
Confidence            3 4  6777777788999999999755

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=89.61  E-value=0.76  Score=41.32  Aligned_cols=98  Identities=20%  Similarity=0.365  Sum_probs=65.9

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhC-cccccccccccCCCCCcchhhh--hhhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERG-LFGLYHDWCESFNTYPRTYDLL--HADH  140 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRG-Li~~~~dwce~f~tyPrtyDll--H~~~  140 (223)
                      ..-..||-+||..|+...++.|-     -|.++-++|....+.+.++-.|- +++++.|=     ++|..|-++  ..+-
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DA-----r~P~~Y~~lv~~VDv  146 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDA-----RHPEKYRMLVEMVDV  146 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-T-----TSGGGGTTTS--EEE
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccC-----CChHHhhcccccccE
Confidence            34578999999999998888653     47788998887777777777764 56788772     244333221  2233


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      +|.....+-..+-++.-++.-||+||++++.
T Consensus       147 I~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  147 IFQDVAQPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             EEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence            4444444444557888888999999999997

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=88.86  E-value=0.25  Score=46.80  Aligned_cols=106  Identities=21%  Similarity=0.208  Sum_probs=62.5

Q ss_pred             hhhccCCCC--CCceEEEeeCCchHH---HHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CC-c
Q 027471           60 YLNGMGINW--SFVRNVMDMRAVYGG---FAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YP-R  131 (223)
Q Consensus        60 Y~~~l~i~~--~~iRnvLDmgaG~Gg---FAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yP-r  131 (223)
                      |-+.+--++  -+-++|||+|||+|=   |||.--.+.|..+-.+..- .-..+++.+-|+-.++..--+....  -| .
T Consensus        48 Yr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~e  126 (346)
T KOG1499|consen   48 YRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVE  126 (346)
T ss_pred             HHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCcc
Confidence            665542222  256789999999996   5554444556655333222 2267788888884433321122222  45 6


Q ss_pred             chhhhhhhhhhcccccccch-----hHHHHhhhhcccCCcEEEEe
Q 027471          132 TYDLLHADHLFSTIKKRCSL-----KAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       132 tyDllH~~~lfs~~~~rC~i-----~~vl~E~DRILRPgG~~ii~  171 (223)
                      -.|+|=+.     |..-|++     +-||.-=||-|.|||.++=+
T Consensus       127 KVDiIvSE-----WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~  166 (346)
T KOG1499|consen  127 KVDIIVSE-----WMGYFLLYESMLDSVLYARDKWLKEGGLIYPD  166 (346)
T ss_pred             ceeEEeeh-----hhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence            67776542     3333433     36777789999999987744

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.72  E-value=0.29  Score=44.14  Aligned_cols=96  Identities=19%  Similarity=0.225  Sum_probs=62.5

Q ss_pred             CceEEEeeCC--chHHHHHHhh--CC-CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCC----CC-cchhh
Q 027471           70 FVRNVMDMRA--VYGGFAAALK--DL-KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNT----YP-RTYDL  135 (223)
Q Consensus        70 ~iRnvLDmga--G~GgFAA~L~--~~-~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~t----yP-rtyDl  135 (223)
                      .-++.||+|.  ||+.+|-||+  +. .|.++.+-+....-..+++--.|..-    +..+=||++..    ++ .|||+
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf  152 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF  152 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence            3567889884  6666555553  44 46666653332233677777777632    33444555544    55 99998


Q ss_pred             hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      +-.+    +++..|.  ....+.=|.|||||.+++.
T Consensus       153 aFvD----adK~nY~--~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  153 AFVD----ADKDNYS--NYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             EEEc----cchHHHH--HHHHHHHhhcccccEEEEe
Confidence            7654    5565554  7888888999999999998

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=88.21  E-value=0.76  Score=42.32  Aligned_cols=40  Identities=15%  Similarity=0.334  Sum_probs=28.8

Q ss_pred             cchhhhhhhhhhcccc----cccchhHHHHhhhhcccCCcEEEEe
Q 027471          131 RTYDLLHADHLFSTIK----KRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       131 rtyDllH~~~lfs~~~----~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      +-||+|-|- ..+.|.    +.-.+..++--+-|.|+|||++|+-
T Consensus       165 ~~fDiIlcL-SiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  165 PEFDIILCL-SITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             ccccEEEEE-EeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence            447776664 223333    2345678999999999999999997

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=87.78  E-value=1.8  Score=39.69  Aligned_cols=138  Identities=14%  Similarity=0.130  Sum_probs=77.3

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCCC-eEEEEecCCCCCCChhhHHhhCcccccccccc-------------cCCCCCc
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESPDTLPIIYERGLFGLYHDWCE-------------SFNTYPR  131 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~~-V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce-------------~f~tyPr  131 (223)
                      +..+.-|.||=+|.|-||.++.+.+.+ |-=+-+|..+.. -  +.+.|..++..+.++.             -+..++.
T Consensus        72 ~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~-V--i~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~  148 (282)
T COG0421          72 LAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPA-V--IELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE  148 (282)
T ss_pred             hhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHH-H--HHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC
Confidence            345666899999999999999999985 322222333221 1  2234555554442221             1122667


Q ss_pred             chhhhhhhhhhccccc--ccchhHHHHhhhhcccCCcEEEEeccH-----HHHHHHHHHHHhCCCeeEEe------ecCC
Q 027471          132 TYDLLHADHLFSTIKK--RCSLKAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMI------YTND  198 (223)
Q Consensus       132 tyDllH~~~lfs~~~~--rC~i~~vl~E~DRILRPgG~~ii~D~~-----~~~~~i~~i~~~l~W~~~~~------~~~~  198 (223)
                      +||+|=++ .......  .=.-..+.-...|.|+|+|.++.....     +.+..+.+-.+++.+.....      ...+
T Consensus       149 ~fDvIi~D-~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g  227 (282)
T COG0421         149 KFDVIIVD-STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSG  227 (282)
T ss_pred             cCCEEEEc-CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccccceeccceecCC
Confidence            89997665 1111110  001126777889999999999998211     22344555566664443221      1223


Q ss_pred             CeeEEEEEe
Q 027471          199 NQGMLCVHK  207 (223)
Q Consensus       199 ~e~~L~~~K  207 (223)
                      -..+.++.+
T Consensus       228 ~~~f~~~s~  236 (282)
T COG0421         228 FWGFIVASF  236 (282)
T ss_pred             ceEEEEeec
Confidence            367777773

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=87.11  E-value=0.43  Score=42.05  Aligned_cols=75  Identities=19%  Similarity=0.197  Sum_probs=46.4

Q ss_pred             CceEEEeeCCchHHH--HHHhhC-CCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcccc
Q 027471           70 FVRNVMDMRAVYGGF--AAALKD-LKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIK  146 (223)
Q Consensus        70 ~iRnvLDmgaG~GgF--AA~L~~-~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~  146 (223)
                      .-+.|+|.|||+|-+  ||+|.. .-|.++.+-|.... ...-+.++ |.|-+---|...+.+..-+|.+=.+-=|..+.
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~e-i~r~N~~~-l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~  122 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALE-IARANAEE-LLGDVEFVVADVSDFRGKFDTVIMNPPFGSQR  122 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHH-HHHHHHHh-hCCceEEEEcchhhcCCccceEEECCCCcccc
Confidence            356799999999975  455554 57888887554333 34445555 44433333456777888888655554554444

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=86.82  E-value=0.24  Score=45.22  Aligned_cols=30  Identities=23%  Similarity=0.395  Sum_probs=23.4

Q ss_pred             eEEEeeCCchHHHHHHhhCC--CeEEEEecCC
Q 027471           72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPI  101 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~  101 (223)
                      .+|||+|||.|.+..+|.++  .|+++-+.+.
T Consensus        38 ~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~   69 (294)
T PTZ00338         38 DTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPR   69 (294)
T ss_pred             CEEEEecCchHHHHHHHHHhCCcEEEEECCHH
Confidence            47999999999999999877  4566555443

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=86.59  E-value=0.14  Score=44.59  Aligned_cols=107  Identities=13%  Similarity=0.185  Sum_probs=52.9

Q ss_pred             hhHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhC--CC--eEEEEecCCCCCCChhhHHh----hCcc
Q 027471           45 FTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKD--LK--VWVMNVVPIESPDTLPIIYE----RGLF  116 (223)
Q Consensus        45 f~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~--~~--V~vmnv~p~~~~~~l~~i~e----RGLi  116 (223)
                      |......-++++.+ .     +..  -.+|+||-||.|.|+-.+++  +.  |++..+-|..-. .+..+.+    .+.+
T Consensus        84 fs~rl~~Er~Ri~~-~-----v~~--~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~-~L~~Ni~lNkv~~~i  154 (200)
T PF02475_consen   84 FSPRLSTERRRIAN-L-----VKP--GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVE-YLKENIRLNKVENRI  154 (200)
T ss_dssp             --GGGHHHHHHHHT-C-------T--T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHH-HHHHHHHHTT-TTTE
T ss_pred             EccccHHHHHHHHh-c-----CCc--ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHH-HHHHHHHHcCCCCeE
Confidence            34444444555543 1     233  36899999999999988877  44  555444332211 2222222    2223


Q ss_pred             cccccccccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEE
Q 027471          117 GLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNL  168 (223)
Q Consensus       117 ~~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~  168 (223)
                      -.++.-|..|.. ...||-+.+.     +.+.+  ..+|-+.-+++|+||.+
T Consensus       155 ~~~~~D~~~~~~-~~~~drvim~-----lp~~~--~~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  155 EVINGDAREFLP-EGKFDRVIMN-----LPESS--LEFLDAALSLLKEGGII  198 (200)
T ss_dssp             EEEES-GGG----TT-EEEEEE-------TSSG--GGGHHHHHHHEEEEEEE
T ss_pred             EEEcCCHHHhcC-ccccCEEEEC-----ChHHH--HHHHHHHHHHhcCCcEE
Confidence            233433444433 5777744443     33322  36788888999999976

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=86.20  E-value=0.57  Score=42.53  Aligned_cols=79  Identities=22%  Similarity=0.390  Sum_probs=50.7

Q ss_pred             ceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCC----------CCcc---hhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT----------YPRT---YDLLH  137 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t----------yPrt---yDllH  137 (223)
                      --++||+|||-|-..-.|+.               +.+-+|.--|.-...+   +++-          .-.|   ||+|-
T Consensus       113 ~~~lLDlGAGdGeit~~m~p---------------~feevyATElS~tMr~---rL~kk~ynVl~~~ew~~t~~k~dli~  174 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAP---------------TFEEVYATELSWTMRD---RLKKKNYNVLTEIEWLQTDVKLDLIL  174 (288)
T ss_pred             CeeEEeccCCCcchhhhhcc---------------hHHHHHHHHhhHHHHH---HHhhcCCceeeehhhhhcCceeehHH
Confidence            46799999999965443332               3333444333222211   1111          1244   99999


Q ss_pred             hhhhhcccccccchh-HHHHhhhhcccC-CcEEEEe
Q 027471          138 ADHLFSTIKKRCSLK-AVVAEVDRILRP-DGNLILR  171 (223)
Q Consensus       138 ~~~lfs~~~~rC~i~-~vl~E~DRILRP-gG~~ii~  171 (223)
                      |-+++.    ||.-+ .+|.++.-+|+| .|.+|+.
T Consensus       175 clNlLD----Rc~~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  175 CLNLLD----RCFDPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             HHHHHH----hhcChHHHHHHHHHHhccCCCcEEEE
Confidence            987765    77655 788899999999 9999987

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=84.00  E-value=2.2  Score=37.78  Aligned_cols=139  Identities=18%  Similarity=0.189  Sum_probs=76.1

Q ss_pred             CCceEEEeeCCchHHHHHHhhCCC-eEEEEecCCCCCCChhhHHh------hC----ccccccccc-ccCCCCCc-chhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESPDTLPIIYE------RG----LFGLYHDWC-ESFNTYPR-TYDL  135 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~~-V~vmnv~p~~~~~~l~~i~e------RG----Li~~~~dwc-e~f~tyPr-tyDl  135 (223)
                      .+-++||=+|.|-|+.++.+.+.+ +--+.++..+.. -++++.+      .+    -+-++++-+ +-+...++ +||+
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~-Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv  153 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPE-VVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV  153 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HH-HHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChH-HHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence            368999999999999999999875 333333333321 2222111      01    111222211 11233676 9999


Q ss_pred             hhhhhhhcccc--cccchhHHHHhhhhcccCCcEEEEec-----cHHHHHHHHHHHHhCCCeeEEee----c--CCCeeE
Q 027471          136 LHADHLFSTIK--KRCSLKAVVAEVDRILRPDGNLILRD-----DAETIVEVEDLVKSLHWDVRMIY----T--NDNQGM  202 (223)
Q Consensus       136 lH~~~lfs~~~--~rC~i~~vl~E~DRILRPgG~~ii~D-----~~~~~~~i~~i~~~l~W~~~~~~----~--~~~e~~  202 (223)
                      |=.+ ++....  ...--..++..+.|.|+|||.+++.-     ..+....+.+.+++..-.+....    +  +..-.+
T Consensus       154 Ii~D-~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~  232 (246)
T PF01564_consen  154 IIVD-LTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSF  232 (246)
T ss_dssp             EEEE-SSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEE
T ss_pred             EEEe-CCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeE
Confidence            7654 222111  01112378889999999999999862     23445666666777766665432    1  122356


Q ss_pred             EEEEecc
Q 027471          203 LCVHKTY  209 (223)
Q Consensus       203 L~~~K~~  209 (223)
                      .+|.|..
T Consensus       233 ~~~s~~~  239 (246)
T PF01564_consen  233 ASASKDI  239 (246)
T ss_dssp             EEEESST
T ss_pred             EEEeCCC
Confidence            7777654

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=83.08  E-value=1.1  Score=38.96  Aligned_cols=47  Identities=17%  Similarity=0.299  Sum_probs=34.7

Q ss_pred             CCCCcchhhhhhhhhhcccc-----c-ccch--hHHHHhhhhcccCCcEEEEecc
Q 027471          127 NTYPRTYDLLHADHLFSTIK-----K-RCSL--KAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       127 ~tyPrtyDllH~~~lfs~~~-----~-rC~i--~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      ..|.++||.+-|-+.+.|..     + -+.+  ..-|.++-|+|||||.+++.-+
T Consensus        58 ~~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP  112 (177)
T PF03269_consen   58 QKYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP  112 (177)
T ss_pred             HHhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence            35999999988877776432     1 1111  2678999999999999999833

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=82.63  E-value=4.6  Score=36.35  Aligned_cols=130  Identities=17%  Similarity=0.348  Sum_probs=85.8

Q ss_pred             cCCCCccchhHhhhhHHHHHhh---hhhhccC-CCCCCceEEEeeCCchHHHHHHhhCC---C-eEEEEecCCCCCCChh
Q 027471           37 YGKAAPEDFTADYQHWKNVVSK---SYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDL---K-VWVMNVVPIESPDTLP  108 (223)
Q Consensus        37 ~~~~~~~~f~~D~~~W~~~v~~---~Y~~~l~-i~~~~iRnvLDmgaG~GgFAA~L~~~---~-V~vmnv~p~~~~~~l~  108 (223)
                      ||..-.....+..+.|.-+-++   .-++.|. +.-..-..||=+||-.|+-+.++.+-   | |.++-++|....+.+.
T Consensus        39 YGE~ii~~~~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~  118 (231)
T COG1889          39 YGERIIKVEGEEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLD  118 (231)
T ss_pred             cCceeEEecCcceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHH
Confidence            6532223334456677433322   2444443 33445678999999999999888664   5 7889999998888888


Q ss_pred             hHHhhC-cccccccccccCCCCCcchhhh--hhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          109 IIYERG-LFGLYHDWCESFNTYPRTYDLL--HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       109 ~i~eRG-Li~~~~dwce~f~tyPrtyDll--H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ++.+|- +++++.|     .++|.+|=.+  |.+-+|.....+-..+-+..-++.-|++||++++.
T Consensus       119 ~a~~R~Ni~PIL~D-----A~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~  179 (231)
T COG1889         119 VAEKRPNIIPILED-----ARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIA  179 (231)
T ss_pred             HHHhCCCceeeecc-----cCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence            888874 5777777     2355444332  33444554544555667788899999999999886

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=81.46  E-value=1.2  Score=39.99  Aligned_cols=118  Identities=17%  Similarity=0.160  Sum_probs=57.9

Q ss_pred             CceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCC-CC--hhhHHhhCccccccc-ccccCCC--CC-cchhhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DT--LPIIYERGLFGLYHD-WCESFNT--YP-RTYDLLHADHL  141 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~-~~--l~~i~eRGLi~~~~d-wce~f~t--yP-rtyDllH~~~l  141 (223)
                      .-++|||+|||.|...-+..+. + -.-.+.-++.. ..  +.....++....-+. |-+.+-.  -+ ...|||=++++
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~  111 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV  111 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence            4678999999999765555432 1 11111112221 11  211222333332221 1111211  11 23499999999


Q ss_pred             hcccccccchhHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCee
Q 027471          142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~  191 (223)
                      ++...+ -....++..+=+-+.+  ++||-++     -+.+.++.+.+....+.+
T Consensus       112 L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v  163 (274)
T PF09243_consen  112 LNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHV  163 (274)
T ss_pred             hhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCce
Confidence            987766 3334555444333444  7777644     224556666554444444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=81.45  E-value=0.84  Score=37.51  Aligned_cols=21  Identities=24%  Similarity=0.583  Sum_probs=19.0

Q ss_pred             hhHHHHhhhhcccCCcEEEEe
Q 027471          151 LKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       151 i~~vl~E~DRILRPgG~~ii~  171 (223)
                      +..++.|+.|||+|||.+++-
T Consensus        35 ~~~~~~~~~rvLk~~g~~~i~   55 (231)
T PF01555_consen   35 MEEWLKECYRVLKPGGSIFIF   55 (231)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCeeEEEE
Confidence            458999999999999999886

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=80.76  E-value=14  Score=32.95  Aligned_cols=124  Identities=15%  Similarity=0.192  Sum_probs=66.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEe--cCCCCCCChhhHHhhC-ccc-ccccccccCCC-----------C-Cc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNV--VPIESPDTLPIIYERG-LFG-LYHDWCESFNT-----------Y-PR  131 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv--~p~~~~~~l~~i~eRG-Li~-~~~dwce~f~t-----------y-Pr  131 (223)
                      .-.+|++|||.|--.++|++.   ++..|..  -|.-..-|++-+.-.+ .+- +..|.-..+..           | |-
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt  123 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT  123 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence            677999999999988888876   5665543  2321111333222222 111 11111111111           1 12


Q ss_pred             chhhhhhhhhhcccc----cccchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCeeEEe
Q 027471          132 TYDLLHADHLFSTIK----KRCSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMI  194 (223)
Q Consensus       132 tyDllH~~~lfs~~~----~rC~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~~~~~  194 (223)
                      +.+=+-..++-+.|.    .|.-++.++--++-||-|-|.|++---.. ...+|-++++.-.|.+...
T Consensus       124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~  191 (209)
T KOG3191|consen  124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA  191 (209)
T ss_pred             CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEE
Confidence            222232333333332    24446678888899999999998853322 2334555777788877643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.27
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.24
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.2
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.2
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.19
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.17
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.17
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.17
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.16
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.16
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.14
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.14
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.14
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.13
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.13
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.12
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.12
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.12
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.12
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.12
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.12
3ocj_A	305	Putative exported protein; structural genomics, PS	99.11
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.11
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.11
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.11
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.1
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.09
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.08
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.08
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.08
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.07
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.07
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.07
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.07
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.06
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.04
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.04
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.03
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.03
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.03
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.02
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.02
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.02
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.01
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.01
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.01
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.01
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.01
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.01
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.0
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.99
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.99
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.98
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.97
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.97
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.97
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.96
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.96
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.96
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.96
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.96
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.96
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.95
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.95
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.94
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.94
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.94
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.92
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.92
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.92
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.92
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.91
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.91
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.91
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.9
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.9
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.9
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.89
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.89
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.89
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.88
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.88
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.88
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.88
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.87
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.87
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.87
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.87
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.87
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.87
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.86
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.86
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.86
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.85
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.85
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.85
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.85
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.84
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.84
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.84
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.83
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.83
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.83
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.83
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.82
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.82
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.82
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.81
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.81
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.81
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.81
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.8
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.8
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.79
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.78
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.78
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.77
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.77
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.77
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.77
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.75
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.74
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.74
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.74
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.74
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.74
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.73
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.71
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.71
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.71
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.7
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.69
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.68
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.66
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.66
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.66
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.66
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.65
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.65
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.65
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.63
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.63
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.63
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.61
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.61
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.59
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.58
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.58
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.58
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.57
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.56
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.56
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.55
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.55
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.55
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.54
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.54
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.54
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.54
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.53
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.52
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.52
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.51
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.51
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.51
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.51
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.49
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.48
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.47
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.47
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.46
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.46
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.46
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.45
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.45
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.43
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.43
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.42
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.41
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.4
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.39
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.38
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.37
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.36
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.36
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.35
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.35
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.34
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.34
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.32
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.32
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.32
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.29
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.29
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.29
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.28
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.28
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.27
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.24
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.23
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.22
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.21
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.21
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.19
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.19
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.19
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.17
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.17
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.16
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.16
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.14
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.14
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.12
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.1
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.06
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.05
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.05
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.04
2o07_A	304	Spermidine synthase; structural genomics, structur	98.04
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.03
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.02
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.02
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.0
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	97.99
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.98
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.94
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.94
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.93
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.91
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.9
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.88
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.87
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.86
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.81
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.76
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	97.73
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	97.73
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	97.73
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	97.7
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	97.68
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.67
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	97.65
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.62
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	97.56
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.5
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.43
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	97.4
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.39
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.38
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.33
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	97.25
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.19
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.07
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.03
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	97.01
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	96.9
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	96.87
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.52
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	96.39
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	96.33
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.25
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	96.16
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	96.02
3cvo_A	202	Methyltransferase-like protein of unknown functio;	95.97
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	95.73
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	95.37
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	95.31
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	95.08
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	94.8
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	94.73
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	94.73
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	94.7
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	94.32
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	93.97
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	93.96
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	93.96
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	93.54
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	93.34
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	93.17
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	92.82
3ll7_A	410	Putative methyltransferase; methytransferase, stru	92.73
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	92.65
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	92.31
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	91.93
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	90.53
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	90.29
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	89.82
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	87.59
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	87.36
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	86.52
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	86.49
2zig_A	297	TTHA0409, putative modification methylase; methylt	86.41
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	85.86
3khk_A	544	Type I restriction-modification system methylation	84.18
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	83.99
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	83.5
3lkd_A	542	Type I restriction-modification system methyltrans	81.26

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.27  E-value=3.3e-12  Score=102.53  Aligned_cols=132  Identities=14%  Similarity=0.167  Sum_probs=85.1

Q ss_pred             EEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCC-cchhhhhhhhhhccc
Q 027471           73 NVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYP-RTYDLLHADHLFSTI  145 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyP-rtyDllH~~~lfs~~  145 (223)
                      +|||+|||.|.++..|.++   .|+.+.++|.......+.+.+.|+..   .++.-.+.++ ++ ++||+|.|..++.+.
T Consensus        46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~  124 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP-IEDNYADLIVSRGSVFFW  124 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS-SCTTCEEEEEEESCGGGC
T ss_pred             EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC-CCcccccEEEECchHhhc
Confidence            8999999999999999886   34555554432222222333335532   2222122233 44 899999999998887


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEeccH------------------------------HHHHHHHHHHHhCCCeeEEee
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILRDDA------------------------------ETIVEVEDLVKSLHWDVRMIY  195 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~~------------------------------~~~~~i~~i~~~l~W~~~~~~  195 (223)
                      .+   ...+|.|+.|+|||||.+++.+..                              ...+.++++++.-.++.....
T Consensus       125 ~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  201 (219)
T 3dlc_A          125 ED---VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEII  201 (219)
T ss_dssp             SC---HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred             cC---HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence            54   468999999999999999997421                              012566777777777654333


Q ss_pred             cCCCeeEEEEEec
Q 027471          196 TNDNQGMLCVHKT  208 (223)
Q Consensus       196 ~~~~e~~L~~~K~  208 (223)
                      .......+++.|+
T Consensus       202 ~~~~~~~~~~~k~  214 (219)
T 3dlc_A          202 LGDEGFWIIISKT  214 (219)
T ss_dssp             EETTEEEEEEBCC
T ss_pred             ecCCceEEEEecc
Confidence            3344455555553

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.24  E-value=3e-12  Score=104.11  Aligned_cols=135  Identities=15%  Similarity=0.099  Sum_probs=91.8

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCCcchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      -.+|||+|||.|.++.+|++.     .|+.+.+++.......+.+.+.|+..  .+..-.+.++.-+.+||+|.|..++.
T Consensus        38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  117 (219)
T 3dh0_A           38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFH  117 (219)
T ss_dssp             TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCGG
T ss_pred             CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhhh
Confidence            458999999999999998765     46666665543222233333445432  22211122332238999999999998


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEeccH-------------HHHHHHHHHHHhCCCeeEE-eecCCCeeEEEEEec
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDA-------------ETIVEVEDLVKSLHWDVRM-IYTNDNQGMLCVHKT  208 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~-------------~~~~~i~~i~~~l~W~~~~-~~~~~~e~~L~~~K~  208 (223)
                      +..+   ...+|.|+.|+|||||.+++.+..             ...+.+.++++...++... .+......+++++|+
T Consensus       118 ~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~  193 (219)
T 3dh0_A          118 ELSE---PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMIV  193 (219)
T ss_dssp             GCSS---HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTEEEEEEECC
T ss_pred             hcCC---HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCceEEEEEEec
Confidence            8764   368999999999999999998421             1257888899999998653 333456777888875

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.20  E-value=2e-11  Score=102.58  Aligned_cols=134  Identities=16%  Similarity=0.132  Sum_probs=93.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc-ccccccccccCCCCCcchhhhhhhh-hhcccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNTYPRTYDLLHADH-LFSTIK  146 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~tyPrtyDllH~~~-lfs~~~  146 (223)
                      -.+|||+|||.|.++..|.+++  |+.+.++|.    .++.+.++-- +..+..-.+.++. +.+||+|.|.. +|.+..
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~----~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~  125 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADSFGTVEGLELSAD----MLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLA  125 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTTSSEEEEEESCHH----HHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSC
T ss_pred             CCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHH----HHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcC
Confidence            4689999999999999999985  455554332    5555555521 1122211122222 69999999987 888876


Q ss_pred             cccchhHHHHhhhhcccCCcEEEEecc-----------------------------------------------------
Q 027471          147 KRCSLKAVVAEVDRILRPDGNLILRDD-----------------------------------------------------  173 (223)
Q Consensus       147 ~rC~i~~vl~E~DRILRPgG~~ii~D~-----------------------------------------------------  173 (223)
                      +.-....+|.++.|+|||||.+++.+.                                                     
T Consensus       126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (263)
T 3pfg_A          126 GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITH  205 (263)
T ss_dssp             HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEE
Confidence            545567899999999999999999520                                                     


Q ss_pred             ------H--HHHHHHHHHHHhCCCeeEEee-cCCCeeEEEEEecc
Q 027471          174 ------A--ETIVEVEDLVKSLHWDVRMIY-TNDNQGMLCVHKTY  209 (223)
Q Consensus       174 ------~--~~~~~i~~i~~~l~W~~~~~~-~~~~e~~L~~~K~~  209 (223)
                            .  -..++++++++.--+++.... ......+++|+|+-
T Consensus       206 ~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a  250 (263)
T 3pfg_A          206 HEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGA  250 (263)
T ss_dssp             EEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC
T ss_pred             EEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCC
Confidence                  0  025788899999888876433 33567789999963

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.20  E-value=1.1e-11  Score=105.45  Aligned_cols=109  Identities=12%  Similarity=0.167  Sum_probs=73.2

Q ss_pred             hhccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhh
Q 027471           61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLH  137 (223)
Q Consensus        61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH  137 (223)
                      ++.+++..  -.+|||+|||.|+++.+|+++   .|+.+.++|.......+.+.+.|+..-+.--+..+..+|.+||+|.
T Consensus        57 ~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~  134 (287)
T 1kpg_A           57 LGKLGLQP--GMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIV  134 (287)
T ss_dssp             HTTTTCCT--TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEE
T ss_pred             HHHcCCCC--cCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEE
Confidence            34454444  358999999999999998843   4566666544222122223333653322222334455679999999


Q ss_pred             hhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          138 ADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       138 ~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      |..+|.+..+ .....+|.|+.|+|||||.+++.+
T Consensus       135 ~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          135 SIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             EESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9999988853 235689999999999999999974

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.19  E-value=4.5e-12  Score=105.36  Aligned_cols=106  Identities=8%  Similarity=0.075  Sum_probs=72.1

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcc---cccccccccCCCCCcchhh
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLF---GLYHDWCESFNTYPRTYDL  135 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi---~~~~dwce~f~tyPrtyDl  135 (223)
                      +.+++..  -.+|||+|||.|.++.+|+++   .|+.+.++|.......+.+.+.|+.   -.++.-.+.++. +.+||+
T Consensus        30 ~~~~~~~--~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~  106 (256)
T 1nkv_A           30 RVLRMKP--GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDV  106 (256)
T ss_dssp             HHTCCCT--TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEE
T ss_pred             HhcCCCC--CCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCE
Confidence            3344444  358999999999999988764   5666666554333233334455663   222211122332 689999


Q ss_pred             hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      |.|..++.+..+   ...+|.|+.|+|||||.+++.+.
T Consensus       107 V~~~~~~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A          107 AACVGATWIAGG---FAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             EEEESCGGGTSS---SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             EEECCChHhcCC---HHHHHHHHHHHcCCCeEEEEecC
Confidence            999888877654   46899999999999999999853

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.17  E-value=9.5e-12  Score=107.21  Aligned_cols=110  Identities=9%  Similarity=0.090  Sum_probs=75.1

Q ss_pred             hhccCCCCCCceEEEeeCCchHHHHHHhhCC-C--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhh
Q 027471           61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDL-K--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLH  137 (223)
Q Consensus        61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH  137 (223)
                      ++.+++..  -.+|||+|||.|.++..|+++ +  |+.+.++|.......+.+.+.|+..-+.-.+..+..++.+||+|.
T Consensus        65 ~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~  142 (302)
T 3hem_A           65 LDKLNLEP--GMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIV  142 (302)
T ss_dssp             HHTTCCCT--TCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEE
T ss_pred             HHHcCCCC--cCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccEEE
Confidence            34444444  468999999999999999876 4  555666544322233334445664322222233333489999999


Q ss_pred             hhhhhcccccc------cchhHHHHhhhhcccCCcEEEEec
Q 027471          138 ADHLFSTIKKR------CSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       138 ~~~lfs~~~~r------C~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      |..+|.+..+.      -....+|.|+.|+|||||.+++.+
T Consensus       143 ~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          143 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  183 (302)
T ss_dssp             EESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             EcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            99999888542      345699999999999999999974

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.17  E-value=4.3e-11  Score=96.49  Aligned_cols=129  Identities=12%  Similarity=0.149  Sum_probs=89.6

Q ss_pred             eEEEeeCCchHHHHHHhhCCCe--EEEEecCCCCCCChhhHHhhCcccccccccccC---CCCC-cchhhhhhhhhhccc
Q 027471           72 RNVMDMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYERGLFGLYHDWCESF---NTYP-RTYDLLHADHLFSTI  145 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~V--~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f---~tyP-rtyDllH~~~lfs~~  145 (223)
                      .+|||+|||.|.++.+|.+++.  +.+.+++    ..++.+.+++.+.....-.+.+   +..+ .+||+|.|..++. .
T Consensus        54 ~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~  128 (227)
T 3e8s_A           54 ERVLDLGCGEGWLLRALADRGIEAVGVDGDR----TLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-H  128 (227)
T ss_dssp             SEEEEETCTTCHHHHHHHTTTCEEEEEESCH----HHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-S
T ss_pred             CEEEEeCCCCCHHHHHHHHCCCEEEEEcCCH----HHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-h
Confidence            7899999999999999998864  4444433    3667777775544333222233   3344 5699999998887 3


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEeccHH--------------------------------HHHHHHHHHHhCCCeeEE
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILRDDAE--------------------------------TIVEVEDLVKSLHWDVRM  193 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~~~--------------------------------~~~~i~~i~~~l~W~~~~  193 (223)
                      .   ....+|.++.|+|||||++++.+...                                ..+.+.++++.-.++...
T Consensus       129 ~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  205 (227)
T 3e8s_A          129 Q---DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS  205 (227)
T ss_dssp             S---CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred             h---hHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence            2   34699999999999999999985311                                357788888888888763


Q ss_pred             eec----C---CCeeEEEEEec
Q 027471          194 IYT----N---DNQGMLCVHKT  208 (223)
Q Consensus       194 ~~~----~---~~e~~L~~~K~  208 (223)
                      ...    +   ....+++++|+
T Consensus       206 ~~~~~~~~~~~~~~~~~va~k~  227 (227)
T 3e8s_A          206 LQEPQHPQSAVPQSLLMVAERH  227 (227)
T ss_dssp             EECCCCTTCSSCSCEEEEEEEC
T ss_pred             EecCCCCCCCCceeEEEEeecC
Confidence            321    1   12567777763

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.17  E-value=2.3e-10  Score=93.10  Aligned_cols=121  Identities=14%  Similarity=0.100  Sum_probs=87.2

Q ss_pred             CceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccccccc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRC  149 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC  149 (223)
                      .-.+|||+|||.|.++..|. ..|+.+.+++.    .         +.++..-.+.++.-+.+||+|.|..+++ ..   
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~----~---------~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~---  128 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR-NPVHCFDLASL----D---------PRVTVCDMAQVPLEDESVDVAVFCLSLM-GT---  128 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC-SCEEEEESSCS----S---------TTEEESCTTSCSCCTTCEEEEEEESCCC-SS---
T ss_pred             CCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC----C---------ceEEEeccccCCCCCCCEeEEEEehhcc-cc---
Confidence            34689999999999999985 67888888766    1         1111111122332238999999988885 22   


Q ss_pred             chhHHHHhhhhcccCCcEEEEeccHH---HHHHHHHHHHhCCCeeEEee-cCCCeeEEEEEec
Q 027471          150 SLKAVVAEVDRILRPDGNLILRDDAE---TIVEVEDLVKSLHWDVRMIY-TNDNQGMLCVHKT  208 (223)
Q Consensus       150 ~i~~vl~E~DRILRPgG~~ii~D~~~---~~~~i~~i~~~l~W~~~~~~-~~~~e~~L~~~K~  208 (223)
                      ....+|.|+.|+|+|||.+++.+...   ....+..+++...++....+ ....-.+++++|.
T Consensus       129 ~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~  191 (215)
T 2zfu_A          129 NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKT  191 (215)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEEC
T ss_pred             CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEec
Confidence            35699999999999999999987655   45788888888888875443 2334578888886

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.16  E-value=7.1e-11  Score=95.14  Aligned_cols=96  Identities=17%  Similarity=0.220  Sum_probs=69.4

Q ss_pred             eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCC-CC-cchhhhhhhhhhccccc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT-YP-RTYDLLHADHLFSTIKK  147 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t-yP-rtyDllH~~~lfs~~~~  147 (223)
                      .+|||+|||.|.++..|.+++  |+.+.++|.    .++.+.++|+..+-. .|..+.. ++ .+||+|.|..++.+..+
T Consensus        48 ~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~----~~~~a~~~~~~~~~~-~~~d~~~~~~~~~~D~v~~~~~l~~~~~  122 (218)
T 3ou2_A           48 GDVLELASGTGYWTRHLSGLADRVTALDGSAE----MIAEAGRHGLDNVEF-RQQDLFDWTPDRQWDAVFFAHWLAHVPD  122 (218)
T ss_dssp             SEEEEESCTTSHHHHHHHHHSSEEEEEESCHH----HHHHHGGGCCTTEEE-EECCTTSCCCSSCEEEEEEESCGGGSCH
T ss_pred             CeEEEECCCCCHHHHHHHhcCCeEEEEeCCHH----HHHHHHhcCCCCeEE-EecccccCCCCCceeEEEEechhhcCCH
Confidence            489999999999999998774  455555433    566666666533111 1122222 44 99999999999988775


Q ss_pred             ccchhHHHHhhhhcccCCcEEEEecc
Q 027471          148 RCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                       ..+..+|.|+-|+|||||.+++.+.
T Consensus       123 -~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          123 -DRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             -HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence             2356899999999999999999854

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.16  E-value=1.5e-11  Score=97.85  Aligned_cols=119  Identities=13%  Similarity=0.141  Sum_probs=77.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCCcchhhhhhhhhhcccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHADHLFSTIK  146 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDllH~~~lfs~~~  146 (223)
                      -.+|||+|||.|.++..|++++  |+.+.++|.......+.+.+.|+..  .+..-.+.++. +.+||+|.|..+|.+..
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~  111 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMFLE  111 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGGSC
T ss_pred             CCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhhCC
Confidence            3489999999999999998775  4555554432222222333445522  22211122333 78999999998888765


Q ss_pred             cccchhHHHHhhhhcccCCcEEEEeccHH--------------HHHHHHHHHHhCCCeeEE
Q 027471          147 KRCSLKAVVAEVDRILRPDGNLILRDDAE--------------TIVEVEDLVKSLHWDVRM  193 (223)
Q Consensus       147 ~rC~i~~vl~E~DRILRPgG~~ii~D~~~--------------~~~~i~~i~~~l~W~~~~  193 (223)
                      . -....+|.++.|+|||||.+++.+...              ..++++++++.  |+...
T Consensus       112 ~-~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~  169 (199)
T 2xvm_A          112 A-KTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVK  169 (199)
T ss_dssp             G-GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEE
T ss_pred             H-HHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEE
Confidence            2 245689999999999999987753211              23577777776  87653

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.14  E-value=1.1e-11  Score=105.91  Aligned_cols=101  Identities=23%  Similarity=0.309  Sum_probs=70.5

Q ss_pred             CceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CC-cchhhhhhhhhhc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YP-RTYDLLHADHLFS  143 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yP-rtyDllH~~~lfs  143 (223)
                      .-.+|||+|||.|.++..|+++   .|+.+.+++.......+.+.+.|+..-+.--+..+..  ++ .+||+|.|..++.
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  161 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFL  161 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGG
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhh
Confidence            3468999999999999999876   4566666544222223334445663211111223332  33 8999999999998


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      +..+   ...+|.|+.|+|||||.+++.+.
T Consensus       162 ~~~~---~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          162 HSPD---KLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             GCSC---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hcCC---HHHHHHHHHHHcCCCeEEEEEEe
Confidence            8876   46999999999999999999853

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.14  E-value=2.3e-11  Score=105.59  Aligned_cols=92  Identities=15%  Similarity=0.116  Sum_probs=63.7

Q ss_pred             eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccccccc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRC  149 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC  149 (223)
                      .+|||+|||+|.++..|++++  |+.+.+++.    .++.+.++.=+...+.-.|.++.-+++||+|.|..+|+.. +  
T Consensus        41 ~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~----ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~-~--  113 (257)
T 4hg2_A           41 GDALDCGCGSGQASLGLAEFFERVHAVDPGEA----QIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF-D--  113 (257)
T ss_dssp             SEEEEESCTTTTTHHHHHTTCSEEEEEESCHH----HHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTC-C--
T ss_pred             CCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHH----hhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHh-h--
Confidence            479999999999999999984  555665543    2222222222223332234444334999999999888543 3  


Q ss_pred             chhHHHHhhhhcccCCcEEEEe
Q 027471          150 SLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       150 ~i~~vl~E~DRILRPgG~~ii~  171 (223)
                       .+.++.|+.|||||||.|++-
T Consensus       114 -~~~~~~e~~rvLkpgG~l~~~  134 (257)
T 4hg2_A          114 -LDRFWAELRRVARPGAVFAAV  134 (257)
T ss_dssp             -HHHHHHHHHHHEEEEEEEEEE
T ss_pred             -HHHHHHHHHHHcCCCCEEEEE
Confidence             468999999999999999775

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.14  E-value=7.8e-12  Score=101.66  Aligned_cols=103  Identities=16%  Similarity=0.295  Sum_probs=72.6

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhC----cccccccccccCCCCCcchhhhhhh
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERG----LFGLYHDWCESFNTYPRTYDLLHAD  139 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRG----Li~~~~dwce~f~tyPrtyDllH~~  139 (223)
                      +....-.+|||+|||.|.++..|.+++  |+.+.+++.    .++.+.++.    -+-.+..-.+.++ .+.+||+|.|.
T Consensus        47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~  121 (216)
T 3ofk_A           47 LSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPR----AIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVA  121 (216)
T ss_dssp             TTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHH----HHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEE
T ss_pred             cccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHH----HHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEc
Confidence            344567899999999999999999884  445555433    444444432    2223332112222 24999999999


Q ss_pred             hhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      .+|.+..+.-.+..+|.++.|+|||||.+++.+.
T Consensus       122 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          122 EVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             SCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            9999888655566889999999999999999753

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.13  E-value=2.6e-11  Score=98.81  Aligned_cols=94  Identities=19%  Similarity=0.312  Sum_probs=67.8

Q ss_pred             eEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCc--ccccccccccCCCCCcchhhhhhhhhhccccc
Q 027471           72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGL--FGLYHDWCESFNTYPRTYDLLHADHLFSTIKK  147 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGL--i~~~~dwce~f~tyPrtyDllH~~~lfs~~~~  147 (223)
                      .+|||+|||.|.++..|.++  .|+.+.+++.    .++.+.++--  +..++.-.+.+ ..+.+||+|+|.+++.+..+
T Consensus        44 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~----~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~  118 (250)
T 2p7i_A           44 GNLLELGSFKGDFTSRLQEHFNDITCVEASEE----AISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDD  118 (250)
T ss_dssp             SCEEEESCTTSHHHHHHTTTCSCEEEEESCHH----HHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSS
T ss_pred             CcEEEECCCCCHHHHHHHHhCCcEEEEeCCHH----HHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcC
Confidence            36999999999999999887  4566665443    4444544421  22222212223 23489999999999998865


Q ss_pred             ccchhHHHHhhh-hcccCCcEEEEecc
Q 027471          148 RCSLKAVVAEVD-RILRPDGNLILRDD  173 (223)
Q Consensus       148 rC~i~~vl~E~D-RILRPgG~~ii~D~  173 (223)
                      .   +.+|.|+. |+|||||++++.+.
T Consensus       119 ~---~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          119 P---VALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             H---HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             H---HHHHHHHHHHhcCCCCEEEEEcC
Confidence            3   68999999 99999999999853

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.13  E-value=2.7e-11  Score=104.90  Aligned_cols=108  Identities=7%  Similarity=0.101  Sum_probs=73.3

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhh
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHA  138 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~  138 (223)
                      +.+++..  -.+|||+|||.|.++..|+++   .|+.+.++|.......+.+.+.|+..-+.-.+..+..+|.+||+|.|
T Consensus        84 ~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~  161 (318)
T 2fk8_A           84 DKLDLKP--GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVS  161 (318)
T ss_dssp             TTSCCCT--TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEE
T ss_pred             HhcCCCC--cCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEE
Confidence            3444443  458999999999999999866   45566665442221222233336543222223445556799999999


Q ss_pred             hhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          139 DHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       139 ~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      ..+|.+..+ -....+|.|+.|+|||||.+++.+
T Consensus       162 ~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          162 IEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             ESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999988743 235689999999999999999974

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.12  E-value=2.6e-10  Score=92.60  Aligned_cols=131  Identities=15%  Similarity=0.183  Sum_probs=88.6

Q ss_pred             CceEEEeeCCchHHHHHHhhCCCeE--EEEecCCCCCCChhhHHhhCc--ccccccccccCCC--CCcchhhhhhhhhhc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLKVW--VMNVVPIESPDTLPIIYERGL--FGLYHDWCESFNT--YPRTYDLLHADHLFS  143 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~V~--vmnv~p~~~~~~l~~i~eRGL--i~~~~dwce~f~t--yPrtyDllH~~~lfs  143 (223)
                      .-.+|||+|||.|.++..|.+++.-  .+.++|    ..++.+.++--  +-.+.   ..+..  ++.+||+|.|..+|.
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~----~~~~~a~~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~l~  117 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSR----EMRMIAKEKLPKEFSITE---GDFLSFEVPTSIDTIVSTYAFH  117 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCH----HHHHHHHHHSCTTCCEES---CCSSSCCCCSCCSEEEEESCGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCH----HHHHHHHHhCCCceEEEe---CChhhcCCCCCeEEEEECcchh
Confidence            4568999999999999999987543  343332    24555555422  22222   23333  338999999999998


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEeccH----H---------------------------HHHHHHHHHHhCCCeeE
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDA----E---------------------------TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~----~---------------------------~~~~i~~i~~~l~W~~~  192 (223)
                      +..+.- ...+|.|+.|+|||||.+++.+..    .                           ..+.++++++.-.+++.
T Consensus       118 ~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~  196 (220)
T 3hnr_A          118 HLTDDE-KNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVT  196 (220)
T ss_dssp             GSCHHH-HHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEE
T ss_pred             cCChHH-HHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEE
Confidence            876531 234899999999999999998521    1                           12567777888888776


Q ss_pred             EeecCCCeeEEEEEec
Q 027471          193 MIYTNDNQGMLCVHKT  208 (223)
Q Consensus       193 ~~~~~~~e~~L~~~K~  208 (223)
                      .....+-.-++.++|+
T Consensus       197 ~~~~~~~~w~~~~~~~  212 (220)
T 3hnr_A          197 FTRLNHFVWVMEATKQ  212 (220)
T ss_dssp             EEECSSSEEEEEEEEC
T ss_pred             EeeccceEEEEeehhh
Confidence            5544555667777764

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.12  E-value=2.2e-11  Score=101.20  Aligned_cols=96  Identities=15%  Similarity=0.230  Sum_probs=69.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCccccc-ccccccCCCCC-cchhhhhhhhhhcccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLY-HDWCESFNTYP-RTYDLLHADHLFSTIK  146 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~-~dwce~f~tyP-rtyDllH~~~lfs~~~  146 (223)
                      -.+|||+|||.|.++.+|.+++  |+.+.+++    ..++.+.++  +..+ .|..+.+..++ ++||+|.|.+++.+..
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~----~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~  115 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEEGIESIGVDINE----DMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLD  115 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHHTCCEEEECSCH----HHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSC
T ss_pred             CCeEEEEeCCCCHHHHHHHhCCCcEEEEECCH----HHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCC
Confidence            3689999999999999998875  44444432    356666666  3322 23222222455 9999999999998886


Q ss_pred             cccchhHHHHhhhhcccCCcEEEEecc
Q 027471          147 KRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       147 ~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      + -.+..+|.|+.|+|||||++++...
T Consensus       116 ~-~~~~~~l~~~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A          116 P-ERLFELLSLCYSKMKYSSYIVIESP  141 (240)
T ss_dssp             G-GGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred             c-HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            3 2457999999999999999999843

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.12  E-value=4e-11  Score=101.16  Aligned_cols=99  Identities=14%  Similarity=0.081  Sum_probs=70.3

Q ss_pred             CceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCCcchhhhhhhhhhc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      .-.+|||+|||.|.++..|++.   .|+.+.++|.......+.+.+.|+..   ++..-.+.++.-+.+||+|+|.++|.
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~  125 (267)
T 3kkz_A           46 EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIY  125 (267)
T ss_dssp             TTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGG
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCce
Confidence            4568999999999999999987   45666665543322333344556643   22221123332238999999999988


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +.    ....+|.++.|+|||||++++.+
T Consensus       126 ~~----~~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          126 NI----GFERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             GT----CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ec----CHHHHHHHHHHHcCCCCEEEEEE
Confidence            77    35789999999999999999985

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.12  E-value=1.1e-11  Score=103.88  Aligned_cols=99  Identities=18%  Similarity=0.203  Sum_probs=69.0

Q ss_pred             CceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCC-cchhhhhhhhhhcc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYP-RTYDLLHADHLFST  144 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyP-rtyDllH~~~lfs~  144 (223)
                      .-.+|||+|||.|.++..|.++  .|+.+.++|.......+.+.++|+..  .+..-.+.++ +| .+||+|.|..++.+
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~~~fD~V~~~~~l~~  115 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFHIVTCRIAAHH  115 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTCEEEEEEESCGGG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC-CCCCCEEEEEEhhhhHh
Confidence            4568999999999999999887  45666665442222223334446532  2221112333 44 89999999988888


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEec
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +.+   .+.+|.|+.|+|||||.+++.+
T Consensus       116 ~~d---~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          116 FPN---PASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             CSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCC---HHHHHHHHHHHcCCCCEEEEEE
Confidence            765   3689999999999999999974

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.12  E-value=9.6e-11  Score=95.76  Aligned_cols=111  Identities=17%  Similarity=0.246  Sum_probs=72.5

Q ss_pred             hhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCCCe--EEEEecCCCCCCChhhHHh----hCc-ccccccc
Q 027471           50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYE----RGL-FGLYHDW  122 (223)
Q Consensus        50 ~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~V--~vmnv~p~~~~~~l~~i~e----RGL-i~~~~dw  122 (223)
                      +.|.+.+.+ ++....   ..-.+|||+|||.|.++..|.+++.  +.+.++|.    .++.+.+    .|+ +..+.  
T Consensus        21 ~~~~~~~~~-~l~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~----~~~~a~~~~~~~~~~~~~~~--   90 (246)
T 1y8c_A           21 KKWSDFIIE-KCVENN---LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQE----MLSEAENKFRSQGLKPRLAC--   90 (246)
T ss_dssp             HHHHHHHHH-HHHTTT---CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHH----HHHHHHHHHHHTTCCCEEEC--
T ss_pred             HHHHHHHHH-HHHHhC---CCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHH----HHHHHHHHHhhcCCCeEEEe--
Confidence            445555554 444321   1345899999999999999988854  34443332    3333333    333 22222  


Q ss_pred             cccCCC--CCcchhhhhhhh-hhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          123 CESFNT--YPRTYDLLHADH-LFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       123 ce~f~t--yPrtyDllH~~~-lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                       ..+..  ++.+||+|.|.. +|.+..+.-....+|.++.|+|+|||.++++
T Consensus        91 -~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           91 -QDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             -CCGGGCCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -cccccCCccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence             22222  448999999998 9988754334679999999999999999985

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.12  E-value=1.8e-11  Score=102.90  Aligned_cols=107  Identities=17%  Similarity=0.198  Sum_probs=72.0

Q ss_pred             hhccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CC-cchh
Q 027471           61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YP-RTYD  134 (223)
Q Consensus        61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yP-rtyD  134 (223)
                      ++.+++..  -.+|||+|||.|.++..|+++   .|+.+.+++.......+.+.+.|+..-+.--+..+..  ++ .+||
T Consensus        54 ~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD  131 (273)
T 3bus_A           54 IALLDVRS--GDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFD  131 (273)
T ss_dssp             HHHSCCCT--TCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEE
T ss_pred             HHhcCCCC--CCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCcc
Confidence            34455443  458999999999999999763   4666666544222222333344663211111223322  44 8999


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +|.|..+|.+..+.   ..+|.|+.|+|||||.+++.+
T Consensus       132 ~v~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          132 AVWALESLHHMPDR---GRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             EEEEESCTTTSSCH---HHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEEechhhhCCCH---HHHHHHHHHHcCCCeEEEEEE
Confidence            99999999887653   689999999999999999985

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.11  E-value=3.8e-11  Score=104.01  Aligned_cols=138  Identities=12%  Similarity=0.025  Sum_probs=92.2

Q ss_pred             ceEEEeeCCchHHHHHHhh--CC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALK--DL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~--~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs  143 (223)
                      -.+|||+|||.|.++..|+  ..   .|+.+.++|.......+.+.+.|+..-+.-.|..+..  ++.+||+|.|..++.
T Consensus       119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  198 (305)
T 3ocj_A          119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGLNI  198 (305)
T ss_dssp             TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCSSGG
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECChhh
Confidence            4579999999999999994  22   4666666554322233333444553211111223333  459999999998888


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEeccH---------------------------------------HHHHHHHHHH
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDA---------------------------------------ETIVEVEDLV  184 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~---------------------------------------~~~~~i~~i~  184 (223)
                      +..+......++.|+-|+|||||.+++.+..                                       ...+.+.+++
T Consensus       199 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  278 (305)
T 3ocj_A          199 YEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQL  278 (305)
T ss_dssp             GCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHH
Confidence            8766544456899999999999999998611                                       1256778888


Q ss_pred             HhCCCeeEEee--cCCCeeEEEEEec
Q 027471          185 KSLHWDVRMIY--TNDNQGMLCVHKT  208 (223)
Q Consensus       185 ~~l~W~~~~~~--~~~~e~~L~~~K~  208 (223)
                      +.-.++.....  ....-..++++|+
T Consensus       279 ~~aGF~~v~~~~~~~~~~~~v~a~Kp  304 (305)
T 3ocj_A          279 EEAGFTDLRFEDDRARLFPTVIARKP  304 (305)
T ss_dssp             HHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred             HHCCCEEEEEEcccCceeeEEEEecC
Confidence            88888875433  2334567888885

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.11  E-value=2.4e-11  Score=100.63  Aligned_cols=120  Identities=14%  Similarity=0.122  Sum_probs=82.3

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhC----cccccccccccCCCCCcchhhhhhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERG----LFGLYHDWCESFNTYPRTYDLLHADH  140 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRG----Li~~~~dwce~f~tyPrtyDllH~~~  140 (223)
                      ...-.+|||+|||.|.++..|+++   .|+.+.++|.    .++.+.++-    -+-.++.-.+.++.-+.+||+|.|..
T Consensus        91 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  166 (254)
T 1xtp_A           91 GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKH----MLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW  166 (254)
T ss_dssp             TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHH----HHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEES
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHH----HHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcc
Confidence            334678999999999999998766   3666665443    444444442    22222221223332338999999999


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEeccHH----------------HHHHHHHHHHhCCCeeE
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~----------------~~~~i~~i~~~l~W~~~  192 (223)
                      ++.+..+ -....+|.++.|+|||||.+++.+...                ..+.+.++++.-.++..
T Consensus       167 ~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  233 (254)
T 1xtp_A          167 TAIYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV  233 (254)
T ss_dssp             CGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred             hhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEE
Confidence            9888754 235689999999999999999987411                23677778777777764

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.11  E-value=9.3e-11  Score=96.89  Aligned_cols=117  Identities=16%  Similarity=0.162  Sum_probs=80.3

Q ss_pred             eEEEeeCCchHHHHHHhhCCCeEEEE--ecCCCCCCChhhHHhh----CcccccccccccCCCC--Ccchhhhhhhhhhc
Q 027471           72 RNVMDMRAVYGGFAAALKDLKVWVMN--VVPIESPDTLPIIYER----GLFGLYHDWCESFNTY--PRTYDLLHADHLFS  143 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~V~vmn--v~p~~~~~~l~~i~eR----GLi~~~~dwce~f~ty--PrtyDllH~~~lfs  143 (223)
                      .+|||+|||.|.++..|++.+..|.-  ++|.    .++.+.++    |+..-+.-.|..+..+  +.+||+|.|..+|.
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~----~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~  143 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPERFVVGLDISES----ALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFC  143 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTEEEEEECSCHH----HHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTT
T ss_pred             CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHH----HHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhh
Confidence            48999999999999999988654443  3332    33333333    3322222222334333  37999999998888


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEeccHH-----------HHHHHHHHHHhCCCeeEE
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDAE-----------TIVEVEDLVKSLHWDVRM  193 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~-----------~~~~i~~i~~~l~W~~~~  193 (223)
                      +... .....+|.++.|+|||||.+++.+...           ..+.++++++.-.|+...
T Consensus       144 ~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  203 (235)
T 3lcc_A          144 AIEP-EMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVS  203 (235)
T ss_dssp             TSCG-GGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEE
T ss_pred             cCCH-HHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEE
Confidence            7752 345689999999999999999863211           257888889988888753

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.11  E-value=1.1e-11  Score=103.00  Aligned_cols=98  Identities=12%  Similarity=0.101  Sum_probs=69.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCCcchhhhhhhhhhcc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYPRTYDLLHADHLFST  144 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyPrtyDllH~~~lfs~  144 (223)
                      -.+|||+|||.|.++..|+++   .|+.+.++|.......+.+.+.|+..   .++.-.+.++.-+.+||+|+|.+++.+
T Consensus        47 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  126 (257)
T 3f4k_A           47 DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYN  126 (257)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCC
T ss_pred             CCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHhh
Confidence            348999999999999999876   46666665543322333344556643   222111333322389999999998887


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEec
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      .    ..+.+|.++.|+|||||.+++.+
T Consensus       127 ~----~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          127 I----GFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             C----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             c----CHHHHHHHHHHHcCCCcEEEEEE
Confidence            6    35689999999999999999986

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.10  E-value=2.2e-10  Score=93.51  Aligned_cols=134  Identities=14%  Similarity=0.145  Sum_probs=86.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc-------ccccccccccCCC---CCcchhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL-------FGLYHDWCESFNT---YPRTYDLL  136 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL-------i~~~~dwce~f~t---yPrtyDll  136 (223)
                      -.+|||+|||.|.++.+|+++    .|+.+.++|.......+.+...|+       +-++.   ..+..   .+.+||+|
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~fD~V  106 (219)
T 3jwg_A           30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQ---SSLVYRDKRFSGYDAA  106 (219)
T ss_dssp             CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEE---CCSSSCCGGGTTCSEE
T ss_pred             CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEe---CcccccccccCCCCEE
Confidence            468999999999999999886    355566654422212222222232       22222   23333   23799999


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHH----------------------HHHHH----HHHHhCCCe
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAET----------------------IVEVE----DLVKSLHWD  190 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~----------------------~~~i~----~i~~~l~W~  190 (223)
                      .|..++.+..+. .+..+|.++.|+|||||.++.+...+.                      ...++    ++++.-.++
T Consensus       107 ~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~  185 (219)
T 3jwg_A          107 TVIEVIEHLDEN-RLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYS  185 (219)
T ss_dssp             EEESCGGGCCHH-HHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEE
T ss_pred             EEHHHHHhCCHH-HHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcE
Confidence            999999988642 346899999999999998887643321                      23334    777777787


Q ss_pred             eEEee---c----CCCeeEEEEEec
Q 027471          191 VRMIY---T----NDNQGMLCVHKT  208 (223)
Q Consensus       191 ~~~~~---~----~~~e~~L~~~K~  208 (223)
                      +....   .    ....++.+++|.
T Consensus       186 v~~~~~g~~~~~~g~~~qi~~~~~~  210 (219)
T 3jwg_A          186 VRFLQIGEIDDEFGSPTQMGVFTLG  210 (219)
T ss_dssp             EEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred             EEEEecCCccccCCCCeEEEEEecc
Confidence            75432   1    235788999885

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.09  E-value=5.3e-11  Score=98.64  Aligned_cols=97  Identities=14%  Similarity=0.209  Sum_probs=68.6

Q ss_pred             CceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhC----cccc-cccccccCCCCCcchhhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERG----LFGL-YHDWCESFNTYPRTYDLLHADHL  141 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRG----Li~~-~~dwce~f~tyPrtyDllH~~~l  141 (223)
                      .-.+|||+|||.|.++..|+++   .|+.+.++|.    .++.+.++.    -+-. ..|.. .++.-+++||+|+|..+
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~  129 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSN----IVNMANERVSGNNKIIFEANDIL-TKEFPENNFDLIYSRDA  129 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH----HHHHHHHTCCSCTTEEEEECCTT-TCCCCTTCEEEEEEESC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHHhhcCCCeEEEECccc-cCCCCCCcEEEEeHHHH
Confidence            4568999999999999999876   4556666443    455555543    1222 22322 23322499999999999


Q ss_pred             hcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +.+... -....+|.|+.|+|||||.+++.+
T Consensus       130 l~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          130 ILALSL-ENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHhcCh-HHHHHHHHHHHHHcCCCCEEEEEE
Confidence            988832 234699999999999999999985

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.08  E-value=1.4e-10  Score=90.91  Aligned_cols=134  Identities=14%  Similarity=0.158  Sum_probs=88.8

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccccc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK  147 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~  147 (223)
                      .-.+|||+|||.|.++.+|.++.  |+.+.+.    +..++.+.++ ... +.-.+..++.-+.+||+|.|..++.+..+
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s----~~~~~~a~~~-~~~-v~~~~~d~~~~~~~~D~v~~~~~l~~~~~   90 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDIN----VIALKEVKEK-FDS-VITLSDPKEIPDNSVDFILFANSFHDMDD   90 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEEEEEEECSC----HHHHHHHHHH-CTT-SEEESSGGGSCTTCEEEEEEESCSTTCSC
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCC----HHHHHHHHHh-CCC-cEEEeCCCCCCCCceEEEEEccchhcccC
Confidence            35789999999999999999985  3333332    2356666665 111 11112233323389999999999988754


Q ss_pred             ccchhHHHHhhhhcccCCcEEEEeccHH-------------HHHHHHHHHHhCCCeeEEe-ecCCCeeEEEEEecccCCC
Q 027471          148 RCSLKAVVAEVDRILRPDGNLILRDDAE-------------TIVEVEDLVKSLHWDVRMI-YTNDNQGMLCVHKTYWRPK  213 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii~D~~~-------------~~~~i~~i~~~l~W~~~~~-~~~~~e~~L~~~K~~w~~~  213 (223)
                         ...+|.|+-|+|||||.+++.+...             ....++++++  .|+.... +.....-.+++.|+-=++.
T Consensus        91 ---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~~~~~~~  165 (170)
T 3i9f_A           91 ---KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLKRKTSEGH  165 (170)
T ss_dssp             ---HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEEECCCCSC
T ss_pred             ---HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEecCCCCcc
Confidence               4689999999999999999984321             1456777766  6765433 2334567777777654443


Q ss_pred             c
Q 027471          214 E  214 (223)
Q Consensus       214 ~  214 (223)
                      .
T Consensus       166 ~  166 (170)
T 3i9f_A          166 H  166 (170)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.08  E-value=2.3e-11  Score=101.50  Aligned_cols=108  Identities=19%  Similarity=0.222  Sum_probs=73.8

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCCcchhh
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYPRTYDL  135 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDl  135 (223)
                      +++.+++..  -.+|||+|||.|.++..|.+..  |+.+.++|.......+.+.+.|+..  .+..-.+.++.-+++||+
T Consensus        13 ~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~   90 (239)
T 1xxl_A           13 MIKTAECRA--EHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI   90 (239)
T ss_dssp             HHHHHTCCT--TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred             HHHHhCcCC--CCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEE
Confidence            456666554  4589999999999999998874  5555554432222223333446532  233222334433389999


Q ss_pred             hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      |.|..++.++.+   ...+|.|+.|+|||||.+++.+
T Consensus        91 v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           91 ITCRYAAHHFSD---VRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             EEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCchhhccC---HHHHHHHHHHHcCCCcEEEEEE
Confidence            999988888764   4689999999999999999974

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.08  E-value=9.7e-11  Score=94.90  Aligned_cols=129  Identities=16%  Similarity=0.163  Sum_probs=83.3

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC-CCcchhhhhhhhhhcccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT-YPRTYDLLHADHLFSTIK  146 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t-yPrtyDllH~~~lfs~~~  146 (223)
                      -.+|||+|||.|.++..|.+.   .|+.+.++|.......+.+.+.|+.. +.--+..+.. .+.+||+|.|...+..  
T Consensus        61 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~fD~i~~~~~~~~--  137 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADVDGKFDLIVANILAEI--  137 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTCCSCEEEEEEESCHHH--
T ss_pred             CCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccCCCCceEEEECCcHHH--
Confidence            358999999999999999876   35556665442222223333346543 1111223333 4599999999865543  


Q ss_pred             cccchhHHHHhhhhcccCCcEEEEecc-HHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEE
Q 027471          147 KRCSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVH  206 (223)
Q Consensus       147 ~rC~i~~vl~E~DRILRPgG~~ii~D~-~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~  206 (223)
                          +..++.++.|+|||||.+++.+. ......+.++++...++.......+.-..++.+
T Consensus       138 ----~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~w~~~~~~  194 (205)
T 3grz_A          138 ----LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRAGRWIGLAIS  194 (205)
T ss_dssp             ----HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEETTEEEEEEE
T ss_pred             ----HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeeccCCEEEEEEe
Confidence                45889999999999999999753 334677888888888877544333333333333

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.07  E-value=1.4e-10  Score=90.86  Aligned_cols=112  Identities=14%  Similarity=0.106  Sum_probs=76.2

Q ss_pred             CceEEEeeCCchHHHHHHhhCC--C--eEEEEecCCCCCCChhhHH----hhCcc---cccccccccCCCCCcchhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL--K--VWVMNVVPIESPDTLPIIY----ERGLF---GLYHDWCESFNTYPRTYDLLHA  138 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~--~--V~vmnv~p~~~~~~l~~i~----eRGLi---~~~~dwce~f~tyPrtyDllH~  138 (223)
                      .-.+|||+|||.|.++..+++.  +  |+.+.+.|.    .++.+.    +.|+.   -+..|..+.|+..+.+||+|.+
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~----~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~  100 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEE----RRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFI  100 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHH----HHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHH----HHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEE
Confidence            3468999999999999999887  3  444444332    333333    33554   2223333444444478999998


Q ss_pred             hhhhcccccccchhHHHHhhhhcccCCcEEEEecc-HHHHHHHHHHHHhCCCeeE
Q 027471          139 DHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       139 ~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~-~~~~~~i~~i~~~l~W~~~  192 (223)
                      ...+.+       ..++.++.|+|||||.+++.+. .+....+.++++....+..
T Consensus       101 ~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~  148 (178)
T 3hm2_A          101 GGGLTA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS  148 (178)
T ss_dssp             CC-TTC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred             CCcccH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence            866654       4799999999999999999865 4456667777777766654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.07  E-value=1.5e-10  Score=94.71  Aligned_cols=97  Identities=15%  Similarity=0.122  Sum_probs=66.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc-ccccccccccCCCCCcchhhhhh-hhhhcccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNTYPRTYDLLHA-DHLFSTIK  146 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~tyPrtyDllH~-~~lfs~~~  146 (223)
                      -.+|||+|||.|.++..|.++.  |+.+.++|.    .++.+.++.- +..+..-.+.++ ++.+||+|.| .++|.+..
T Consensus        41 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~----~~~~a~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~  115 (239)
T 3bxo_A           41 ASSLLDVACGTGTHLEHFTKEFGDTAGLELSED----MLTHARKRLPDATLHQGDMRDFR-LGRKFSAVVSMFSSVGYLK  115 (239)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHHSEEEEEESCHH----HHHHHHHHCTTCEEEECCTTTCC-CSSCEEEEEECTTGGGGCC
T ss_pred             CCeEEEecccCCHHHHHHHHhCCcEEEEeCCHH----HHHHHHHhCCCCEEEECCHHHcc-cCCCCcEEEEcCchHhhcC
Confidence            4689999999999999998773  555555433    4555555421 222221111222 2689999996 44777765


Q ss_pred             cccchhHHHHhhhhcccCCcEEEEec
Q 027471          147 KRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       147 ~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +.-....+|.++.|+|||||.+++++
T Consensus       116 ~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          116 TTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             SHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            44456799999999999999999974

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.07  E-value=1.5e-10  Score=92.12  Aligned_cols=121  Identities=18%  Similarity=0.143  Sum_probs=75.3

Q ss_pred             eEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCc--ccccccccccCCCCC-cchhhhhhh-hhhccc
Q 027471           72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGL--FGLYHDWCESFNTYP-RTYDLLHAD-HLFSTI  145 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGL--i~~~~dwce~f~tyP-rtyDllH~~-~lfs~~  145 (223)
                      .+|||+|||+|.++..|+++  .|+.+.++|..-....+.+.+.|+  +-++++-.+.+..++ .+||+|.++ +.+...
T Consensus        24 ~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~~  103 (185)
T 3mti_A           24 SIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSA  103 (185)
T ss_dssp             CEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-----
T ss_pred             CEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCCc
Confidence            57999999999999999987  456666655433323333444566  334444444444455 889999665 222210


Q ss_pred             c-----cccchhHHHHhhhhcccCCcEEEEecc------HHHHHHHHHHHHhCC---CeeE
Q 027471          146 K-----KRCSLKAVVAEVDRILRPDGNLILRDD------AETIVEVEDLVKSLH---WDVR  192 (223)
Q Consensus       146 ~-----~rC~i~~vl~E~DRILRPgG~~ii~D~------~~~~~~i~~i~~~l~---W~~~  192 (223)
                      .     ..-....+|.|+-|+|||||.+++..-      .+....+.+.++.+.   |.+.
T Consensus       104 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (185)
T 3mti_A          104 DKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAM  164 (185)
T ss_dssp             ------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEE
T ss_pred             chhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEE
Confidence            0     111234778999999999999998732      223456666676665   5554

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.07  E-value=2.3e-11  Score=105.45  Aligned_cols=101  Identities=11%  Similarity=0.132  Sum_probs=70.4

Q ss_pred             eEEEeeCCchHHHHHHhhCC----C--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhcc
Q 027471           72 RNVMDMRAVYGGFAAALKDL----K--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFST  144 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~----~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~  144 (223)
                      .+|||+|||+|.++.+|+++    +  |+.+.++|..-....+.+.+.|+..-+.=.|+.+..+| ..||++.|..++++
T Consensus        72 ~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~~  151 (261)
T 4gek_A           72 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQF  151 (261)
T ss_dssp             CEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGGG
T ss_pred             CEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeeeee
Confidence            47999999999999888754    3  56666655432222233334466443333355677777 78999999877776


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      ..+ -....+|.|+.|+|||||.|+++|.
T Consensus       152 ~~~-~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          152 LEP-SERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             SCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCc-hhHhHHHHHHHHHcCCCcEEEEEec
Confidence            543 1235789999999999999999854

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.06  E-value=1.8e-10  Score=92.01  Aligned_cols=157  Identities=13%  Similarity=0.044  Sum_probs=91.1

Q ss_pred             HhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc-cc-ccc
Q 027471           47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL-FG-LYH  120 (223)
Q Consensus        47 ~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL-i~-~~~  120 (223)
                      .+++.+.+.+.+ ++..+    ..-.+|||+|||.|.++.+|++.    .|+.+.+.|.......+.+...|+ +- ...
T Consensus        12 ~~~~~~~~~~~~-~l~~~----~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~   86 (215)
T 4dzr_A           12 PDTEVLVEEAIR-FLKRM----PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAA   86 (215)
T ss_dssp             HHHHHHHHHHHH-HHTTC----CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHH
T ss_pred             ccHHHHHHHHHH-Hhhhc----CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEc
Confidence            567777776665 44321    33578999999999999998876    466677766654333333333343 11 334


Q ss_pred             cccccCCC---CCcchhhhhhhhhhccccc-------------ccc----------hhHHHHhhhhcccCCcE-EEEecc
Q 027471          121 DWCESFNT---YPRTYDLLHADHLFSTIKK-------------RCS----------LKAVVAEVDRILRPDGN-LILRDD  173 (223)
Q Consensus       121 dwce~f~t---yPrtyDllH~~~lfs~~~~-------------rC~----------i~~vl~E~DRILRPgG~-~ii~D~  173 (223)
                      |..+.++.   .+.+||+|.|+.-|.....             ...          +..++.++.|+|||||. +++.-.
T Consensus        87 d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A           87 DGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             HHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             chHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            44443332   2378999988544322110             011          16889999999999999 777655


Q ss_pred             HHHHHHHHHHHH--hCCCeeE--EeecCCCeeEEEEEec
Q 027471          174 AETIVEVEDLVK--SLHWDVR--MIYTNDNQGMLCVHKT  208 (223)
Q Consensus       174 ~~~~~~i~~i~~--~l~W~~~--~~~~~~~e~~L~~~K~  208 (223)
                      ......+..+++  .-.|...  ..+..+.+++++++|.
T Consensus       167 ~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~  205 (215)
T 4dzr_A          167 HNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTRE  205 (215)
T ss_dssp             TSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEEC
T ss_pred             CccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEc
Confidence            555667777777  5666542  2344567899999874

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.04  E-value=3.5e-10  Score=91.01  Aligned_cols=132  Identities=11%  Similarity=0.108  Sum_probs=89.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc-ccccccccccCCCCCcchhhhhhhhhhccccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNTYPRTYDLLHADHLFSTIKK  147 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~tyPrtyDllH~~~lfs~~~~  147 (223)
                      -.+|||+|||.|.++..|.+++  |+.+.+++    ..++.+.++.- +..+..-.+.++.-+++||+|.|..+|.+...
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  117 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPAT----RLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGP  117 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCH----HHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCT
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCH----HHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCH
Confidence            4579999999999999998885  44444432    25566666521 11222111233323489999999998888752


Q ss_pred             ccchhHHHHhhhhcccCCcEEEEeccHH----------------HHHHHHHHHHhCCCeeEEee--cCCCeeEEEEEe
Q 027471          148 RCSLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVRMIY--TNDNQGMLCVHK  207 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii~D~~~----------------~~~~i~~i~~~l~W~~~~~~--~~~~e~~L~~~K  207 (223)
                       -....+|.++.|+|||||.+++.+...                ....+.++++...++.....  .......|...|
T Consensus       118 -~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~~l~~~~  194 (203)
T 3h2b_A          118 -GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTAEA  194 (203)
T ss_dssp             -TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTTSSEEEEEEEE
T ss_pred             -HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCCCcchhhhhhh
Confidence             245799999999999999999985321                25788899999999876443  223455555544

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.04  E-value=2.6e-11  Score=102.46  Aligned_cols=116  Identities=14%  Similarity=0.175  Sum_probs=72.9

Q ss_pred             hhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHh----hCccc--ccc
Q 027471           50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYE----RGLFG--LYH  120 (223)
Q Consensus        50 ~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~e----RGLi~--~~~  120 (223)
                      +.|...+.+.-.+.+   ...-..|||+|||.|.++.+|.++.   |+.+.+.|.    .++.+.+    .|.--  ...
T Consensus        43 ~~we~~~m~~~a~~~---~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~----~~~~a~~~~~~~~~~~~~~~~  115 (236)
T 3orh_A           43 ERWETPYMHALAAAA---SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDG----VFQRLRDWAPRQTHKVIPLKG  115 (236)
T ss_dssp             EGGGHHHHHHHHHHH---TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHH----HHHHHHHHGGGCSSEEEEEES
T ss_pred             HHHHHHHHHHHHHhh---ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHH----HHHHHHHHHhhCCCceEEEee
Confidence            357555443122222   2234689999999999999998873   566666554    4444433    33321  234


Q ss_pred             cccccCCCCC-cchhhhhhhhhhccccc--ccchhHHHHhhhhcccCCcEEEEec
Q 027471          121 DWCESFNTYP-RTYDLLHADHLFSTIKK--RCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       121 dwce~f~tyP-rtyDllH~~~lfs~~~~--rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      ||.+....+| .+||.|..+.+.+....  .-..+.++.|+-|+|||||.|++-+
T Consensus       116 ~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          116 LWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             hHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            4544455566 88998876544443321  2234589999999999999999863

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.03  E-value=3.1e-11  Score=98.01  Aligned_cols=99  Identities=15%  Similarity=0.219  Sum_probs=68.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHh----hCc-------ccccccccccCCCCCcchhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYE----RGL-------FGLYHDWCESFNTYPRTYDLLH  137 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~e----RGL-------i~~~~dwce~f~tyPrtyDllH  137 (223)
                      -.+|||+|||.|.++.+|++++  |+.+.++|.    .++.+.+    .|+       +-.+..-.+.++.-+.+||+|.
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  106 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASKGYSVTGIDINSE----AIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV  106 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH----HHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHhCCCeEEEEECCHH----HHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence            4589999999999999998885  444554433    3333333    344       2222211122322238999999


Q ss_pred             hhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          138 ADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       138 ~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      |..++.+..+.-....+|.++.|+|||||.+++.+.
T Consensus       107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            999998887654455899999999999999999853

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.03  E-value=1.2e-10  Score=94.41  Aligned_cols=122  Identities=11%  Similarity=0.055  Sum_probs=80.3

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCCC----eEEEEecCCCCCCChhhHHhhCcccccccccccC-CCCC--cchh
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDLK----VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF-NTYP--RTYD  134 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~----V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f-~tyP--rtyD  134 (223)
                      ..+++..  -.+|||+|||.|.++..|++..    |+.+.++|.......+.+...|+.. +.-.+..+ ...+  .+||
T Consensus        34 ~~l~~~~--~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~D  110 (204)
T 3e05_A           34 SKLRLQD--DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARN-VTLVEAFAPEGLDDLPDPD  110 (204)
T ss_dssp             HHTTCCT--TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTT-EEEEECCTTTTCTTSCCCS
T ss_pred             HHcCCCC--CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeCChhhhhhcCCCCC
Confidence            3444444  4689999999999999998763    6666665543222223333346521 11112233 2222  6799


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc-HHHHHHHHHHHHhCCCeeE
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~-~~~~~~i~~i~~~l~W~~~  192 (223)
                      +|-+...+.      ....++.++.|+|||||.+++... .+....+.++++...|+..
T Consensus       111 ~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~  163 (204)
T 3e05_A          111 RVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVE  163 (204)
T ss_dssp             EEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEE
T ss_pred             EEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCcee
Confidence            998875443      456899999999999999999854 4567788888888888644

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.03  E-value=6.7e-11  Score=101.47  Aligned_cols=101  Identities=10%  Similarity=0.105  Sum_probs=69.0

Q ss_pred             CceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCc-ccccccccccCCCCCcchhhhhhhhhhc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      .-.+|||+|||+|.++..|++.     .|+.+.++|.......+.+.+.|+ +-.+..-++.++ ++.+||+|+|..++.
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~  100 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-LNDKYDIAICHAFLL  100 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-CSSCEEEEEEESCGG
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC-cCCCeeEEEECChhh
Confidence            4568999999999999999876     356666655422211112222232 222222222333 468999999999988


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      +..+.   +.+|.++-|+|||||++++.+..
T Consensus       101 ~~~~~---~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A          101 HMTTP---ETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             GCSSH---HHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCCH---HHHHHHHHHHcCCCCEEEEEecc
Confidence            87653   59999999999999999988654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.02  E-value=1.2e-10  Score=101.17  Aligned_cols=99  Identities=10%  Similarity=0.020  Sum_probs=69.6

Q ss_pred             CceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CC-cchhhhhhhhhhc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YP-RTYDLLHADHLFS  143 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yP-rtyDllH~~~lfs  143 (223)
                      .-.+|||+|||.|.++..|+++   .|+.+.+++.......+.+.+.|+..-+.-.|..+..  ++ .+||+|.|..++.
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  196 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTM  196 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGG
T ss_pred             CCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchh
Confidence            4568999999999999999876   4556666554322233334445664322212223333  44 8999999998888


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +. +   ...+|.|+.|+|||||.+++.+
T Consensus       197 ~~-~---~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          197 YV-D---LHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             GS-C---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hC-C---HHHHHHHHHHHcCCCcEEEEEE
Confidence            77 3   6799999999999999999974

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.02  E-value=5.4e-11  Score=101.23  Aligned_cols=99  Identities=16%  Similarity=0.158  Sum_probs=68.6

Q ss_pred             eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCC-Ccchhhhhhhhhhccc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTY-PRTYDLLHADHLFSTI  145 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~ty-PrtyDllH~~~lfs~~  145 (223)
                      .+|||+|||.|.++..|.+.+  |+.+.++|.......+.+.+.|+..   .++.-.+.++.+ +.+||+|.|.+++.+.
T Consensus        70 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~  149 (285)
T 4htf_A           70 LRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEWV  149 (285)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGGC
T ss_pred             CEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhcc
Confidence            589999999999999998885  4445554432221222233346522   333223344433 4999999999999887


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      .+.   ..+|.|+.|+|||||.+++.+.
T Consensus       150 ~~~---~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          150 ADP---RSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             SCH---HHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCH---HHHHHHHHHHcCCCeEEEEEEe
Confidence            653   6899999999999999999854

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.02  E-value=4.8e-11  Score=107.55  Aligned_cols=142  Identities=12%  Similarity=0.163  Sum_probs=98.2

Q ss_pred             chhHhhhhHHHHHhhhhhhcc-C-CCCCCceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCccccccc
Q 027471           44 DFTADYQHWKNVVSKSYLNGM-G-INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHD  121 (223)
Q Consensus        44 ~f~~D~~~W~~~v~~~Y~~~l-~-i~~~~iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~d  121 (223)
                      .+...+..|.+.... +.+.+ . +....-.+|||+|||.|.++.+|.+++..|.-+-+  +++.++.+.++|+......
T Consensus        80 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~--s~~~~~~a~~~~~~~~~~~  156 (416)
T 4e2x_A           80 YHSSGSSVMREHFAM-LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEP--SSGVAAKAREKGIRVRTDF  156 (416)
T ss_dssp             CCGGGCHHHHHHHHH-HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECC--CHHHHHHHHTTTCCEECSC
T ss_pred             CcCcCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECC--CHHHHHHHHHcCCCcceee
Confidence            345566678777665 54433 1 22334568999999999999999988665444422  1236777888876543321


Q ss_pred             c----cccCCCCC-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHH--------------------H
Q 027471          122 W----CESFNTYP-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE--------------------T  176 (223)
Q Consensus       122 w----ce~f~tyP-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~--------------------~  176 (223)
                      +    .+.++ ++ ++||+|.|.++|.+..+   ...+|.|+.|+|||||.+++..+..                    .
T Consensus       157 ~~~~~~~~l~-~~~~~fD~I~~~~vl~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s  232 (416)
T 4e2x_A          157 FEKATADDVR-RTEGPANVIYAANTLCHIPY---VQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFS  232 (416)
T ss_dssp             CSHHHHHHHH-HHHCCEEEEEEESCGGGCTT---HHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECC
T ss_pred             echhhHhhcc-cCCCCEEEEEECChHHhcCC---HHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCC
Confidence            1    11222 33 89999999999999874   5699999999999999999984321                    1


Q ss_pred             HHHHHHHHHhCCCeeE
Q 027471          177 IVEVEDLVKSLHWDVR  192 (223)
Q Consensus       177 ~~~i~~i~~~l~W~~~  192 (223)
                      ...+++++++-.++..
T Consensus       233 ~~~l~~ll~~aGf~~~  248 (416)
T 4e2x_A          233 ATSVQGMAQRCGFELV  248 (416)
T ss_dssp             HHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHcCCEEE
Confidence            2578888888888765

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.01  E-value=5.8e-11  Score=102.17  Aligned_cols=99  Identities=15%  Similarity=0.193  Sum_probs=64.0

Q ss_pred             EEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc-----ccccccccccCCCCCcchhhhhhh-hhhcc
Q 027471           73 NVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL-----FGLYHDWCESFNTYPRTYDLLHAD-HLFST  144 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL-----i~~~~dwce~f~tyPrtyDllH~~-~lfs~  144 (223)
                      +|||+|||.|.++..|++++  |+.+.++|.......+.+.+.|+     +-++..-.+.++ ++.+||+|.|. .++.+
T Consensus        85 ~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~  163 (299)
T 3g2m_A           85 PVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA-LDKRFGTVVISSGSINE  163 (299)
T ss_dssp             CEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC-CSCCEEEEEECHHHHTT
T ss_pred             cEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC-cCCCcCEEEECCccccc
Confidence            79999999999999999884  55566654322212222222232     222322122233 36999998865 44544


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      . +......+|.|+.|+|||||.+++...
T Consensus       164 ~-~~~~~~~~l~~~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          164 L-DEADRRGLYASVREHLEPGGKFLLSLA  191 (299)
T ss_dssp             S-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C-CHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence            3 333457999999999999999999843

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.01  E-value=2.3e-10  Score=89.81  Aligned_cols=134  Identities=16%  Similarity=0.165  Sum_probs=80.1

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcc----cc-cccccccCCCCCcchhhhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLF----GL-YHDWCESFNTYPRTYDLLHADHLF  142 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi----~~-~~dwce~f~tyPrtyDllH~~~lf  142 (223)
                      .-.+|||+|||.|.++..+.+.+  |+.+.+.|.......+.+.+.|+.    -+ ..|+.+.++  +.+||+|.|...|
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~  129 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITNPPI  129 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEECCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEECCCc
Confidence            34689999999999999998763  444554433221122222233543    22 233222211  4799999998766


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK  207 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K  207 (223)
                      .+..  -....++.++.|+|+|||.+++.+... ....+.+.++..-.++......+.-.++.++|
T Consensus       130 ~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k  193 (194)
T 1dus_A          130 RAGK--EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             TTCH--HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEETTEEEEEEEC
T ss_pred             ccch--hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecCCcEEEEEEee
Confidence            5421  234689999999999999999986543 34445555555433444433344455555554

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.01  E-value=3.8e-11  Score=101.30  Aligned_cols=100  Identities=10%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCCcchhhhhhhhhhc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      .-.+|||+|||.|.++..|.++    .|+.+.++|.......+...+.|+..  .+..-.+.++.-+.+||+|+|..++.
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  116 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLE  116 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGG
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechhh
Confidence            3568999999999999999866    35555554432222222233345532  22221223343348999999999998


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +..+.   +.+|.++.|+|||||++++.+
T Consensus       117 ~~~~~---~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          117 HLQSP---EEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             GCSCH---HHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcCCH---HHHHHHHHHHcCCCcEEEEEE
Confidence            87653   589999999999999999975

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.01  E-value=9.2e-11  Score=95.83  Aligned_cols=100  Identities=16%  Similarity=0.106  Sum_probs=68.7

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHh----hCccc----ccccccccCCC--CC-cchhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYE----RGLFG----LYHDWCESFNT--YP-RTYDL  135 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~e----RGLi~----~~~dwce~f~t--yP-rtyDl  135 (223)
                      -.+|||+|||.|.++.+|+++    .|+.+.++|.    .++.+.+    .|+..    -+.-.+..+..  ++ .+||+
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~----~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  105 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYR----SLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDA  105 (217)
T ss_dssp             CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHH----HHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSE
T ss_pred             CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHH----HHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCE
Confidence            458999999999999999875    4666666544    3333333    33321    11111233333  22 79999


Q ss_pred             hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHH
Q 027471          136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE  175 (223)
Q Consensus       136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~  175 (223)
                      |.|..+|.+..+ ..+..+|.++.|+|||||.+++++...
T Consensus       106 v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~~  144 (217)
T 3jwh_A          106 ATVIEVIEHLDL-SRLGAFERVLFEFAQPKIVIVTTPNIE  144 (217)
T ss_dssp             EEEESCGGGCCH-HHHHHHHHHHHTTTCCSEEEEEEEBHH
T ss_pred             EeeHHHHHcCCH-HHHHHHHHHHHHHcCCCEEEEEccCcc
Confidence            999999988753 345689999999999999998886643

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.01  E-value=3.5e-10  Score=93.81  Aligned_cols=103  Identities=18%  Similarity=0.116  Sum_probs=71.5

Q ss_pred             hhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc-ccccccccccCCCCCcchhh
Q 027471           61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNTYPRTYDL  135 (223)
Q Consensus        61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~tyPrtyDl  135 (223)
                      ++.+++.  .-.+|||+|||.|.++..|.++    .|+.+.++|.    .++.+.++.- +-.++.-.+.++ .+.+||+
T Consensus        26 ~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~----~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~   98 (259)
T 2p35_A           26 LAQVPLE--RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDD----MLEKAADRLPNTNFGKADLATWK-PAQKADL   98 (259)
T ss_dssp             HTTCCCS--CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHH----HHHHHHHHSTTSEEEECCTTTCC-CSSCEEE
T ss_pred             HHhcCCC--CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHH----HHHHHHHhCCCcEEEECChhhcC-ccCCcCE
Confidence            3444433  3458999999999999998765    5676766543    4555555511 112222123344 3489999


Q ss_pred             hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      |+|..++.+..+   ...+|.|+.|+|||||.+++...
T Consensus        99 v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           99 LYANAVFQWVPD---HLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             EEEESCGGGSTT---HHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EEEeCchhhCCC---HHHHHHHHHHhcCCCeEEEEEeC
Confidence            999988887754   46899999999999999999853

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.01  E-value=1.8e-10  Score=92.92  Aligned_cols=98  Identities=15%  Similarity=0.158  Sum_probs=67.8

Q ss_pred             CCceEEEeeCCchHHHHHHhhCCCe--EEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhccc
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTI  145 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~~V--~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~  145 (223)
                      ..-.+|||+|||.|.++.+|.+++.  +.+.+++.    .++.+.++..--...|.++....++ .+||+|.|.+++.+.
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~  106 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPE----AAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHL  106 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHH----HHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGS
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHH----HHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhc
Confidence            3456899999999999999998853  33443322    4444444432112233222112355 899999999999887


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      .+.   ..+|.++.|+|+|||.+++..+
T Consensus       107 ~~~---~~~l~~~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A          107 FDP---WAVIEKVKPYIKQNGVILASIP  131 (230)
T ss_dssp             SCH---HHHHHHTGGGEEEEEEEEEEEE
T ss_pred             CCH---HHHHHHHHHHcCCCCEEEEEeC
Confidence            653   5899999999999999999853

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.00  E-value=6.7e-11  Score=97.21  Aligned_cols=115  Identities=17%  Similarity=0.097  Sum_probs=79.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCCCe--EEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCCcchhhhhhhhhhccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYPRTYDLLHADHLFSTI  145 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~V--~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyPrtyDllH~~~lfs~~  145 (223)
                      -.+|||+|||.|.++.+|.+++.  +.+.++|    ..++.+.+++...   .+..-.+.++.-+.+||+|.|.++|.+.
T Consensus        54 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~----~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  129 (242)
T 3l8d_A           54 EAEVLDVGCGDGYGTYKLSRTGYKAVGVDISE----VMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT  129 (242)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCEEEEEESCH----HHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHcCCeEEEEECCH----HHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence            35899999999999999998854  4444433    2556666653221   2221122333224899999999999887


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEeccHH----------------------HHHHHHHHHHhCCCeeE
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILRDDAE----------------------TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~~~----------------------~~~~i~~i~~~l~W~~~  192 (223)
                      .+.   ..+|.++.|+|||||.+++.+...                      ....++++++...++..
T Consensus       130 ~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  195 (242)
T 3l8d_A          130 EEP---LRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVV  195 (242)
T ss_dssp             SCH---HHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEE
T ss_pred             cCH---HHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEE
Confidence            543   589999999999999999984211                      12467777888777764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.99  E-value=6.1e-10  Score=90.10  Aligned_cols=96  Identities=17%  Similarity=0.212  Sum_probs=67.2

Q ss_pred             CceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHhhC-cccccccccccCCCCCcchhhhhhhhhhccccc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERG-LFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK  147 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~eRG-Li~~~~dwce~f~tyPrtyDllH~~~lfs~~~~  147 (223)
                      .-.+|||+|||.|.++..| .. .|+.+.+++.    .++.+.++. -+..++.-.+.++.-+++||+|.|.+++.+..+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  110 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEA----MLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED  110 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-CCSEEEEECCCHH----HHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred             CCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHH----HHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence            4468999999999999999 44 5566555432    455555552 122222212233322379999999998888764


Q ss_pred             ccchhHHHHhhhhcccCCcEEEEecc
Q 027471          148 RCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                         ...+|.|+.|+|||||.+++.+.
T Consensus       111 ---~~~~l~~~~~~L~pgG~l~i~~~  133 (211)
T 2gs9_A          111 ---VERVLLEARRVLRPGGALVVGVL  133 (211)
T ss_dssp             ---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---HHHHHHHHHHHcCCCCEEEEEec
Confidence               46899999999999999999854

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.99  E-value=1.1e-10  Score=96.12  Aligned_cols=125  Identities=10%  Similarity=0.131  Sum_probs=79.9

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhh-Cc--------------ccccccc
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYER-GL--------------FGLYHDW  122 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eR-GL--------------i~~~~dw  122 (223)
                      |++.+++..+  .+|||+|||.|.++.+|++++  |+.+.+++.    .++.+.++ ++              ..-+.=.
T Consensus        14 ~~~~l~~~~~--~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~----~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~   87 (203)
T 1pjz_A           14 YWSSLNVVPG--ARVLVPLCGKSQDMSWLSGQGYHVVGAELSEA----AVERYFTERGEQPHITSQGDFKVYAAPGIEIW   87 (203)
T ss_dssp             HHHHHCCCTT--CEEEETTTCCSHHHHHHHHHCCEEEEEEECHH----HHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred             HHHhcccCCC--CEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHH----HHHHHHHHccCCcccccccccccccCCccEEE
Confidence            5555555443  579999999999999998875  666666655    44555444 11              0111112


Q ss_pred             cccCCCCC----cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcE-EEEe-ccHH----------HHHHHHHHHHh
Q 027471          123 CESFNTYP----RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGN-LILR-DDAE----------TIVEVEDLVKS  186 (223)
Q Consensus       123 ce~f~tyP----rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~-~ii~-D~~~----------~~~~i~~i~~~  186 (223)
                      |..+...|    .+||+|-|..+|.+... .....++.|+.|+|||||. ++++ +..+          ..++++.++..
T Consensus        88 ~~d~~~l~~~~~~~fD~v~~~~~l~~l~~-~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~  166 (203)
T 1pjz_A           88 CGDFFALTARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG  166 (203)
T ss_dssp             EECCSSSTHHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS
T ss_pred             ECccccCCcccCCCEEEEEECcchhhCCH-HHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC
Confidence            34444444    68999998877776542 3345789999999999998 3333 2110          24567777666


Q ss_pred             CCCeeE
Q 027471          187 LHWDVR  192 (223)
Q Consensus       187 l~W~~~  192 (223)
                       .|++.
T Consensus       167 -gf~i~  171 (203)
T 1pjz_A          167 -NWEVT  171 (203)
T ss_dssp             -SEEEE
T ss_pred             -CcEEE
Confidence             67654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.98  E-value=3.5e-10  Score=93.76  Aligned_cols=93  Identities=17%  Similarity=0.201  Sum_probs=65.9

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhh---Cc--cc-ccccccccCCCCC-cchhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYER---GL--FG-LYHDWCESFNTYP-RTYDLLHADH  140 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eR---GL--i~-~~~dwce~f~tyP-rtyDllH~~~  140 (223)
                      .-.+|||+|||.|.++..|.+++  |+.+.++|.    .++.+.++   +.  +- ...|. +.++ ++ .+||+|+|..
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~  112 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIARGYRYIALDADAA----MLEVFRQKIAGVDRKVQVVQADA-RAIP-LPDESVHGVIVVH  112 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHH----HHHHHHHHTTTSCTTEEEEESCT-TSCC-SCTTCEEEEEEES
T ss_pred             CCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHH----HHHHHHHHhhccCCceEEEEccc-ccCC-CCCCCeeEEEECC
Confidence            34689999999999999999885  444444332    44444444   11  11 22222 2333 44 8999999998


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      +|.+..+   ...++.|+.|+|||||.+++.
T Consensus       113 ~l~~~~~---~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          113 LWHLVPD---WPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             CGGGCTT---HHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhcCC---HHHHHHHHHHHCCCCcEEEEE
Confidence            8887764   468999999999999999986

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.97  E-value=2.3e-10  Score=94.47  Aligned_cols=128  Identities=13%  Similarity=0.143  Sum_probs=75.0

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCC-------CC----cchhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT-------YP----RTYDLLH  137 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t-------yP----rtyDllH  137 (223)
                      -.+|||+|||+|+++.+|++++  |+.+.+.|.....        |+--+..|..+ .++       ++    .+||+|-
T Consensus        26 g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~~--------~v~~~~~D~~~-~~~~~~~~~~~~~~~~~~~D~Vl   96 (191)
T 3dou_A           26 GDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIA--------GVRFIRCDIFK-ETIFDDIDRALREEGIEKVDDVV   96 (191)
T ss_dssp             TCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCCT--------TCEEEECCTTS-SSHHHHHHHHHHHHTCSSEEEEE
T ss_pred             CCEEEEEeecCCHHHHHHHHcCCcEEEEeccccccCC--------CeEEEEccccC-HHHHHHHHHHhhcccCCcceEEe
Confidence            4689999999999999999874  6667777753221        22112222111 111       11    4899988


Q ss_pred             hhhhhcc--------cccccchhHHHHhhhhcccCCcEEEEecc-HHHHHHHHHHHHhCCCeeE-Ee-e----cCCCeeE
Q 027471          138 ADHLFST--------IKKRCSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDVR-MI-Y----TNDNQGM  202 (223)
Q Consensus       138 ~~~lfs~--------~~~rC~i~~vl~E~DRILRPgG~~ii~D~-~~~~~~i~~i~~~l~W~~~-~~-~----~~~~e~~  202 (223)
                      |+.....        .......+.++.++-|+|||||.|++.-- .+....+...++.. +... .. .    .++.|.+
T Consensus        97 sd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y  175 (191)
T 3dou_A           97 SDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKISKPPASRGSSSEIY  175 (191)
T ss_dssp             ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEEECC------CCEEE
T ss_pred             cCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEEECCCCccCCCceEE
Confidence            7643221        11112235788999999999999998522 22233444444442 3322 21 1    2468999


Q ss_pred             EEEEec
Q 027471          203 LCVHKT  208 (223)
Q Consensus       203 L~~~K~  208 (223)
                      ++|++.
T Consensus       176 ~v~~~~  181 (191)
T 3dou_A          176 IMFFGF  181 (191)
T ss_dssp             EEEEEE
T ss_pred             EEEeee
Confidence            999873

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.97  E-value=2.6e-10  Score=91.60  Aligned_cols=137  Identities=15%  Similarity=0.145  Sum_probs=83.5

Q ss_pred             eEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCc---ccccccccccCCC-CCcchhhhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGL---FGLYHDWCESFNT-YPRTYDLLHADHLF  142 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGL---i~~~~dwce~f~t-yPrtyDllH~~~lf  142 (223)
                      .+|||+|||.|.++.+|+++     .|+.+.+.|.......+.+.+.|+   +-+++.-.+.++. .+.+||+|-+...|
T Consensus        24 ~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~  103 (197)
T 3eey_A           24 DTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGY  103 (197)
T ss_dssp             CEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEESB
T ss_pred             CEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCCc
Confidence            48999999999999988765     466666544322223333444465   2233322233443 44899999887544


Q ss_pred             cccc------cccchhHHHHhhhhcccCCcEEEEecc------HHHHHHHHHHHHhCC---CeeEEee---c-CCCeeEE
Q 027471          143 STIK------KRCSLKAVVAEVDRILRPDGNLILRDD------AETIVEVEDLVKSLH---WDVRMIY---T-NDNQGML  203 (223)
Q Consensus       143 s~~~------~rC~i~~vl~E~DRILRPgG~~ii~D~------~~~~~~i~~i~~~l~---W~~~~~~---~-~~~e~~L  203 (223)
                      -...      ..-....++.++-|+|||||.+++.+-      .+....+.+.++.+.   |.+....   . +....++
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp~~~  183 (197)
T 3eey_A          104 LPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPPILV  183 (197)
T ss_dssp             CTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCCEEE
T ss_pred             ccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCCeEE
Confidence            1100      111224699999999999999998742      224566677776665   6665332   1 2355677


Q ss_pred             EEEec
Q 027471          204 CVHKT  208 (223)
Q Consensus       204 ~~~K~  208 (223)
                      +.+|.
T Consensus       184 ~~~~~  188 (197)
T 3eey_A          184 CIEKI  188 (197)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            77764

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.97  E-value=5.6e-10  Score=94.87  Aligned_cols=95  Identities=13%  Similarity=0.158  Sum_probs=67.7

Q ss_pred             CCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhC--cccccccccccCCCCCcchhhhhhhhhhcc
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERG--LFGLYHDWCESFNTYPRTYDLLHADHLFST  144 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRG--Li~~~~dwce~f~tyPrtyDllH~~~lfs~  144 (223)
                      ..-.+|||+|||.|.++..|.+.+  |+.+.++|.    .++.+.++.  +--...|. +.++ ++.+||+|+|..++.+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~----~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~  129 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAAT----MIEKARQNYPHLHFDVADA-RNFR-VDKPLDAVFSNAMLHW  129 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH----HHHHHHHHCTTSCEEECCT-TTCC-CSSCEEEEEEESCGGG
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHH----HHHHHHhhCCCCEEEECCh-hhCC-cCCCcCEEEEcchhhh
Confidence            345689999999999999998764  445555433    455555442  21122222 2343 4689999999988887


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEec
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      ..+   .+.+|.|+.|+|||||++++..
T Consensus       130 ~~d---~~~~l~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          130 VKE---PEAAIASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             CSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcC---HHHHHHHHHHhcCCCcEEEEEe
Confidence            664   4689999999999999999973

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.96  E-value=2.2e-10  Score=96.90  Aligned_cols=95  Identities=18%  Similarity=0.256  Sum_probs=65.7

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccccc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK  147 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~  147 (223)
                      .-.+|||+|||+|.++..|.+.+  |+.+.++|.    .++.+.++.-+-.++.-++.++.-+++||+|||.+++.+..+
T Consensus        34 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~----~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  109 (261)
T 3ege_A           34 KGSVIADIGAGTGGYSVALANQGLFVYAVEPSIV----MRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSH  109 (261)
T ss_dssp             TTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHH----HHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSS
T ss_pred             CCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHH----HHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhccC
Confidence            34689999999999999999875  444555442    222222222222333323445533499999999999988754


Q ss_pred             ccchhHHHHhhhhcccCCcEEEEec
Q 027471          148 RCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                         ...+|.|+.|+|| ||++++.+
T Consensus       110 ---~~~~l~~~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A          110 ---LEKSFQEMQRIIR-DGTIVLLT  130 (261)
T ss_dssp             ---HHHHHHHHHHHBC-SSCEEEEE
T ss_pred             ---HHHHHHHHHHHhC-CcEEEEEE
Confidence               4699999999999 99777763

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.96  E-value=2.6e-10  Score=92.51  Aligned_cols=115  Identities=15%  Similarity=0.096  Sum_probs=82.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhh-CcccccccccccCCCCCcchhhhhhhhhhccccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK  147 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~  147 (223)
                      -.+|||+|||.|.++..|++++  |+.+.++|.    .++.+.++ ++--...|. +.++ .+.+||+|.|..++.+...
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~~  117 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAAGFDVDATDGSPE----LAAEASRRLGRPVRTMLF-HQLD-AIDAYDAVWAHACLLHVPR  117 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHTSCCEECCG-GGCC-CCSCEEEEEECSCGGGSCH
T ss_pred             CCcEEEECCCCCHHHHHHHHcCCeEEEECCCHH----HHHHHHHhcCCceEEeee-ccCC-CCCcEEEEEecCchhhcCH
Confidence            4589999999999999999885  444444332    55555555 433233332 2334 4499999999998888762


Q ss_pred             ccchhHHHHhhhhcccCCcEEEEeccH---------------HHHHHHHHHHHhCC-CeeE
Q 027471          148 RCSLKAVVAEVDRILRPDGNLILRDDA---------------ETIVEVEDLVKSLH-WDVR  192 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii~D~~---------------~~~~~i~~i~~~l~-W~~~  192 (223)
                       -....+|.|+.|+|||||.+++....               -..+.+.++++.-. ++..
T Consensus       118 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~  177 (211)
T 3e23_A          118 -DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASV  177 (211)
T ss_dssp             -HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEE
T ss_pred             -HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEE
Confidence             23568999999999999999998321               13577888888887 8765

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.96  E-value=1.5e-10  Score=98.34  Aligned_cols=99  Identities=12%  Similarity=0.194  Sum_probs=68.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCCCe--EEEEecCCCCCCChhhHHhh----Cccc-------ccccccccCC---CCCcchh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYER----GLFG-------LYHDWCESFN---TYPRTYD  134 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~V--~vmnv~p~~~~~~l~~i~eR----GLi~-------~~~dwce~f~---tyPrtyD  134 (223)
                      -.+|||+|||+|.++..|++.+.  +.+.++|.    .++.+.++    +...       ...|+. .++   .-+.+||
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~----~l~~a~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~fD  132 (293)
T 3thr_A           58 CHRVLDVACGTGVDSIMLVEEGFSVTSVDASDK----MLKYALKERWNRRKEPAFDKWVIEEANWL-TLDKDVPAGDGFD  132 (293)
T ss_dssp             CCEEEETTCTTSHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTTSHHHHTCEEEECCGG-GHHHHSCCTTCEE
T ss_pred             CCEEEEecCCCCHHHHHHHHCCCeEEEEECCHH----HHHHHHHhhhhcccccccceeeEeecChh-hCccccccCCCeE
Confidence            46899999999999999998854  44555443    44444332    2211       112211 122   2238999


Q ss_pred             hhhhh-hhhccccc----ccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          135 LLHAD-HLFSTIKK----RCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       135 llH~~-~lfs~~~~----rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      +|+|. .+|.+..+    .-....+|.|+.|+|||||++++....
T Consensus       133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            99997 78888776    344569999999999999999998543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.96  E-value=3.6e-10  Score=97.21  Aligned_cols=93  Identities=10%  Similarity=0.085  Sum_probs=64.8

Q ss_pred             CceEEEeeCCchHHHHHHhh---CC--CeEEEEecCCCCCCChhhHHhh-----Cccc---ccccccccCCCCC------
Q 027471           70 FVRNVMDMRAVYGGFAAALK---DL--KVWVMNVVPIESPDTLPIIYER-----GLFG---LYHDWCESFNTYP------  130 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~---~~--~V~vmnv~p~~~~~~l~~i~eR-----GLi~---~~~dwce~f~tyP------  130 (223)
                      .-.+|||+|||.|.++..|+   ..  .|+.+.++|.    .++.+.++     |...   .++.-.+.++.-+      
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~----~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  111 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSAT----MIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDK  111 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHH----HHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHH----HHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccC
Confidence            46789999999999999998   44  4555666544    34444333     3322   2222122233222      


Q ss_pred             cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEE
Q 027471          131 RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLIL  170 (223)
Q Consensus       131 rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii  170 (223)
                      ++||+|+|..++++.    ....+|.|+.|+|||||.+++
T Consensus       112 ~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          112 QKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             SCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence            699999999988877    457999999999999999998

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.96  E-value=4.3e-10  Score=93.64  Aligned_cols=97  Identities=13%  Similarity=0.181  Sum_probs=69.1

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCc---ccccccccccCCCCCcchhhhhhhhhhc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGL---FGLYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGL---i~~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      .-.+|||+|||.|.++..|++++   |+.+.++|.    .++.+.++.-   +-.+..-.+.++.-+.+||+|.|..+|.
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  119 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSER----MLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALH  119 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHH----HHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHH----HHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhh
Confidence            45789999999999999998874   455555432    5555555532   1222211223442348999999999998


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      +..+   ...+|.|+.|+|||||.++++..
T Consensus       120 ~~~~---~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          120 YIAS---FDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             GCSC---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhh---HHHHHHHHHHHcCCCcEEEEEeC
Confidence            8754   46999999999999999999743

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.96  E-value=2e-10  Score=95.30  Aligned_cols=120  Identities=13%  Similarity=0.066  Sum_probs=76.4

Q ss_pred             CCceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhh----C---------------------------
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYER----G---------------------------  114 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eR----G---------------------------  114 (223)
                      ..-.+|||+|||.|.++..|++++   |+.+.++|.    .++.+.++    +                           
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~----~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQ----NLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE  130 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHH----HHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHH----HHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence            346789999999999999988774   444554433    23322221    1                           


Q ss_pred             ----cc-c-ccccccccCCCCC---cchhhhhhhhhhccccc-ccchhHHHHhhhhcccCCcEEEEeccHH---------
Q 027471          115 ----LF-G-LYHDWCESFNTYP---RTYDLLHADHLFSTIKK-RCSLKAVVAEVDRILRPDGNLILRDDAE---------  175 (223)
Q Consensus       115 ----Li-~-~~~dwce~f~tyP---rtyDllH~~~lfs~~~~-rC~i~~vl~E~DRILRPgG~~ii~D~~~---------  175 (223)
                          -+ . ...|..+..+.-+   .+||+|.|..++++... .-....+|.++-|+|||||++++.+...         
T Consensus       131 ~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~  210 (265)
T 2i62_A          131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQ  210 (265)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred             HhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCc
Confidence                02 2 2222222111123   79999999888874322 1234589999999999999999985221         


Q ss_pred             -------HHHHHHHHHHhCCCeeE
Q 027471          176 -------TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       176 -------~~~~i~~i~~~l~W~~~  192 (223)
                             ..+.+.++++...++..
T Consensus       211 ~~~~~~~~~~~~~~~l~~aGf~~~  234 (265)
T 2i62_A          211 KFSSLPLGWETVRDAVEEAGYTIE  234 (265)
T ss_dssp             EEECCCCCHHHHHHHHHHTTCEEE
T ss_pred             cccccccCHHHHHHHHHHCCCEEE
Confidence                   23478888888888765

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.95  E-value=1.5e-09  Score=90.90  Aligned_cols=135  Identities=16%  Similarity=0.198  Sum_probs=85.1

Q ss_pred             ceEEEeeCCchHHHHHHhh--CC--CeEEEEecCCCCCCChhhHHhhCc--ccccccccccCCC---CCcchhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALK--DL--KVWVMNVVPIESPDTLPIIYERGL--FGLYHDWCESFNT---YPRTYDLLHADHL  141 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~--~~--~V~vmnv~p~~~~~~l~~i~eRGL--i~~~~dwce~f~t---yPrtyDllH~~~l  141 (223)
                      -.+|||+|||.|.++..|+  ..  .|+.+.+++.......+.+...|+  +-+++.-.+.++.   .+.+||+|.|..+
T Consensus        71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~  150 (240)
T 1xdz_A           71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV  150 (240)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEecc
Confidence            4689999999999888887  33  466666655322212233334466  3334322233432   2578999998642


Q ss_pred             hcccccccchhHHHHhhhhcccCCcEEEEecc---HHHHHHHHHHHHhCCCeeEEee----c--CCCeeEEEEEecccCC
Q 027471          142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRDD---AETIVEVEDLVKSLHWDVRMIY----T--NDNQGMLCVHKTYWRP  212 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~---~~~~~~i~~i~~~l~W~~~~~~----~--~~~e~~L~~~K~~w~~  212 (223)
                             ..+..++.++.|+|||||.+++.+.   .+.+..+.+.++...+......    .  .....+++++|.-..|
T Consensus       151 -------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~~~~~  223 (240)
T 1xdz_A          151 -------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIKNTP  223 (240)
T ss_dssp             -------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECSCCC
T ss_pred             -------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEecCCCC
Confidence                   3467999999999999999999753   3345566667777777764221    1  2334566777764443

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.95  E-value=5.1e-10  Score=97.97  Aligned_cols=139  Identities=15%  Similarity=0.197  Sum_probs=89.1

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccC-CCCCcchhhhhhhh
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF-NTYPRTYDLLHADH  140 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f-~tyPrtyDllH~~~  140 (223)
                      +++....+|||+|||.|.++..|.++    .++++.+ |.......+.+.+.|+-.-+.--+..| ..+|..||++.|.+
T Consensus       165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~  243 (332)
T 3i53_A          165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSA  243 (332)
T ss_dssp             SCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEES
T ss_pred             CCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEeh
Confidence            34556789999999999999999764    3555555 432222333344456633121111233 44666899999999


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEeccHH----------------------HHHHHHHHHHhCCCeeEEee-cC
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE----------------------TIVEVEDLVKSLHWDVRMIY-TN  197 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~----------------------~~~~i~~i~~~l~W~~~~~~-~~  197 (223)
                      +++++.+. ....+|.++-|+|||||++++.|...                      ..++++++++.--++..... ..
T Consensus       244 vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~  322 (332)
T 3i53_A          244 VLHDWDDL-SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPIS  322 (332)
T ss_dssp             CGGGSCHH-HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEECS
T ss_pred             hhccCCHH-HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEECC
Confidence            99988763 23689999999999999999975410                      12456666666666654222 22


Q ss_pred             CCeeEEEEEe
Q 027471          198 DNQGMLCVHK  207 (223)
Q Consensus       198 ~~e~~L~~~K  207 (223)
                      . ..++.|+|
T Consensus       323 ~-~~vie~r~  331 (332)
T 3i53_A          323 Y-VSIVEMTA  331 (332)
T ss_dssp             S-SEEEEEEE
T ss_pred             C-cEEEEEee
Confidence            3 56666665

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.94  E-value=7e-11  Score=97.12  Aligned_cols=98  Identities=17%  Similarity=0.171  Sum_probs=67.2

Q ss_pred             CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc-ccccccccccCCCCC--cchhhhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNTYP--RTYDLLHADHLF  142 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~tyP--rtyDllH~~~lf  142 (223)
                      .-.+|||+|||.|.++..|++.    .|+.+.++|.    .++.+.++-- .+-+.-.|..+..+|  .+||+|.|..++
T Consensus        44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l  119 (234)
T 3dtn_A           44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEK----MLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSI  119 (234)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHH----HHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCG
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHH----HHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCcc
Confidence            3478999999999999999876    4555666443    3444443310 001111223444433  899999999999


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      .+..+. ....+|.|+.|+|||||.+++.+
T Consensus       120 ~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          120 HHLEDE-DKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             GGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCHH-HHHHHHHHHHHhcCCCcEEEEEE
Confidence            888542 23469999999999999999985

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.94  E-value=2.1e-09  Score=84.38  Aligned_cols=130  Identities=11%  Similarity=0.145  Sum_probs=84.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCCCe--EEEEecCCCCCCChhhHHhhCc-ccccccccccCCC--CC-cchhhhhhh-hhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNT--YP-RTYDLLHAD-HLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~V--~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~t--yP-rtyDllH~~-~lfs  143 (223)
                      -.+|||+|||.|.++..|.+.+.  +.+.+.|.    .++.+.++.- +..++   ..+..  ++ .+||+|.|. .+++
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~----~~~~a~~~~~~~~~~~---~d~~~~~~~~~~~D~i~~~~~~~~  119 (195)
T 3cgg_A           47 GAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPI----LIDYAKQDFPEARWVV---GDLSVDQISETDFDLIVSAGNVMG  119 (195)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEESCHH----HHHHHHHHCTTSEEEE---CCTTTSCCCCCCEEEEEECCCCGG
T ss_pred             CCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHH----HHHHHHHhCCCCcEEE---cccccCCCCCCceeEEEECCcHHh
Confidence            45899999999999999988754  44444332    3444443321 22222   22322  33 899999997 6676


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEeccHH---HHHHHHHHHHhCCCeeEEeec---------CCCeeEEEEEec
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDAE---TIVEVEDLVKSLHWDVRMIYT---------NDNQGMLCVHKT  208 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~---~~~~i~~i~~~l~W~~~~~~~---------~~~e~~L~~~K~  208 (223)
                      +... -....+|.++.|+|+|||.+++.....   ....+.++++...++......         ...-.+++++|+
T Consensus       120 ~~~~-~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~  195 (195)
T 3cgg_A          120 FLAE-DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK  195 (195)
T ss_dssp             GSCH-HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred             hcCh-HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence            6532 234689999999999999999975433   356777888877777653321         124556677763

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.94  E-value=4.8e-10  Score=93.12  Aligned_cols=119  Identities=15%  Similarity=0.181  Sum_probs=81.1

Q ss_pred             CceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCc------ccccccccccCCCCCcchhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGL------FGLYHDWCESFNTYPRTYDLLHADH  140 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGL------i~~~~dwce~f~tyPrtyDllH~~~  140 (223)
                      .-.+|||+|||.|.++..|+++   .|+.+.++|.    .++.+.++.-      +-.+..-.+.++.-+.+||+|.|..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITED----FLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHH----HHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHH----HHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcc
Confidence            3578999999999999999877   4556665443    3333333321      1122211222332336899999998


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEeccHH---------------HHHHHHHHHHhCCCeeEE
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE---------------TIVEVEDLVKSLHWDVRM  193 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~---------------~~~~i~~i~~~l~W~~~~  193 (223)
                      ++.+..+. .+..+|.|+.|+|||||.+++.+...               ....+.++++...++...
T Consensus       155 ~l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  221 (241)
T 2ex4_A          155 VIGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA  221 (241)
T ss_dssp             CGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred             hhhhCCHH-HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEE
Confidence            88887652 24589999999999999999976421               356788888888887653

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.92  E-value=2.2e-10  Score=101.20  Aligned_cols=104  Identities=6%  Similarity=-0.025  Sum_probs=64.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcc--------ccccccc------ccCC-CCC-c
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLF--------GLYHDWC------ESFN-TYP-R  131 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi--------~~~~dwc------e~f~-tyP-r  131 (223)
                      -.+|||+|||.|+....+...   .|+.+.+++..-....+...+.|+-        ......+      +.++ .+| +
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~  128 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFG  128 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSS
T ss_pred             CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCC
Confidence            467999999999866655433   3666777655322222222223421        0111111      2332 245 8


Q ss_pred             chhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          132 TYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       132 tyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      +||+|-|..+++..-+.-....+|.|+.|+|||||+|+++...
T Consensus       129 ~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          129 KFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             CEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            9999999877654322123469999999999999999998654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.92  E-value=1.6e-09  Score=84.49  Aligned_cols=112  Identities=9%  Similarity=0.096  Sum_probs=76.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCC-cchhhhhhhhhhcc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYP-RTYDLLHADHLFST  144 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyP-rtyDllH~~~lfs~  144 (223)
                      -.+|||+|||.|.++..|.+.+  |+.+.+.|.......+.+.+.|+..   ...|+.+   .+| .+||+|.|...   
T Consensus        36 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~i~~~~~---  109 (183)
T 2yxd_A           36 DDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VLDKLEFNKAFIGGT---  109 (183)
T ss_dssp             TCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HGGGCCCSEEEECSC---
T ss_pred             CCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cccCCCCcEEEECCc---
Confidence            3589999999999999998864  4555554432221222233335422   2233322   244 68999999855   


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEec-cHHHHHHHHHHHHhCCCeeEEe
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVKSLHWDVRMI  194 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D-~~~~~~~i~~i~~~l~W~~~~~  194 (223)
                          .....++.++.|+  |||.+++.+ ..+...++.+.++...|++...
T Consensus       110 ----~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          110 ----KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             ----SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ----ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence                3467899999999  999999987 5556778888888888887643

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.92  E-value=4.7e-09  Score=93.88  Aligned_cols=134  Identities=13%  Similarity=0.163  Sum_probs=85.5

Q ss_pred             hhccCCCCCCceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhh--Cccc----ccccccccCCCCC-
Q 027471           61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYER--GLFG----LYHDWCESFNTYP-  130 (223)
Q Consensus        61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eR--GLi~----~~~dwce~f~tyP-  130 (223)
                      ++.+++.. .-++|||+|||+|+|+..|++++   |+.+.+++.+    +.....+  .+..    -+...  ....+| 
T Consensus        77 l~~~~~~~-~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~m----L~~a~r~~~rv~~~~~~ni~~l--~~~~l~~  149 (291)
T 3hp7_A           77 LAVFNLSV-EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQ----LVWKLRQDDRVRSMEQYNFRYA--EPVDFTE  149 (291)
T ss_dssp             HHHTTCCC-TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSC----SCHHHHTCTTEEEECSCCGGGC--CGGGCTT
T ss_pred             HHhcCCCc-cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHH----HHHHHHhCcccceecccCceec--chhhCCC
Confidence            34444433 35689999999999999998774   6777776653    3332221  1110    01110  112245 


Q ss_pred             cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH----------------------HHHHHHHHHHHhCC
Q 027471          131 RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA----------------------ETIVEVEDLVKSLH  188 (223)
Q Consensus       131 rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~----------------------~~~~~i~~i~~~l~  188 (223)
                      .+||++-|+..|..      +..+|-|+.|+|||||.+++...+                      ...+++..++...-
T Consensus       150 ~~fD~v~~d~sf~s------l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~G  223 (291)
T 3hp7_A          150 GLPSFASIDVSFIS------LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYG  223 (291)
T ss_dssp             CCCSEEEECCSSSC------GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEeeHhh------HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCC
Confidence            56999999877763      368999999999999999886111                      13467778888899


Q ss_pred             CeeEEee-c------CCCeeEEEEEe
Q 027471          189 WDVRMIY-T------NDNQGMLCVHK  207 (223)
Q Consensus       189 W~~~~~~-~------~~~e~~L~~~K  207 (223)
                      |.+.... +      .+.|=++.++|
T Consensus       224 f~v~~~~~spi~g~~gn~e~l~~~~~  249 (291)
T 3hp7_A          224 FSVKGLDFSPIQGGHGNIEFLAHLEK  249 (291)
T ss_dssp             EEEEEEEECSSCCGGGCCCEEEEEEE
T ss_pred             CEEEEEEECCCCCCCcCHHHHHHhhh
Confidence            9876332 2      24566666666

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.92  E-value=1.2e-09  Score=87.75  Aligned_cols=126  Identities=9%  Similarity=0.167  Sum_probs=74.2

Q ss_pred             eEEEeeCCchHHHHHHhhCC------CeEEEEecCCCCCCChhhHHhhCcccccccccccCC------------------
Q 027471           72 RNVMDMRAVYGGFAAALKDL------KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN------------------  127 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~------~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~------------------  127 (223)
                      .+|||+|||.|+++.+|+++      .|+.+.++|.....        ++.-+..|.. .+.                  
T Consensus        24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~--------~v~~~~~d~~-~~~~~~~~~~~~i~~~~~~~~   94 (201)
T 2plw_A           24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIP--------NVYFIQGEIG-KDNMNNIKNINYIDNMNNNSV   94 (201)
T ss_dssp             EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCT--------TCEEEECCTT-TTSSCCC-----------CHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCC--------CceEEEcccc-chhhhhhccccccccccchhh
Confidence            68999999999999998754      37778887742211        1111112221 111                  


Q ss_pred             ------CCC-cchhhhhhhhhhcccc----cc----cchhHHHHhhhhcccCCcEEEEeccH-HHHHHHHHHHHhCCCee
Q 027471          128 ------TYP-RTYDLLHADHLFSTIK----KR----CSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       128 ------tyP-rtyDllH~~~lfs~~~----~r----C~i~~vl~E~DRILRPgG~~ii~D~~-~~~~~i~~i~~~l~W~~  191 (223)
                            .++ .+||+|.|+..++...    +.    -....++.++-|+|||||.+++.... +....+...++.. +..
T Consensus        95 ~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~~  173 (201)
T 2plw_A           95 DYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQL  173 (201)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT-EEE
T ss_pred             HHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH-Hhe
Confidence                  034 7899999876554321    10    01125889999999999999996322 2233444444443 332


Q ss_pred             -EEe-e----cCCCeeEEEEEe
Q 027471          192 -RMI-Y----TNDNQGMLCVHK  207 (223)
Q Consensus       192 -~~~-~----~~~~e~~L~~~K  207 (223)
                       ... .    ..+.|.+++|++
T Consensus       174 v~~~~~~~~r~~s~e~y~v~~~  195 (201)
T 2plw_A          174 VHTTKPKASRNESREIYLVCKN  195 (201)
T ss_dssp             EEECCCC-----CCEEEEEEEE
T ss_pred             EEEECCcccCCcCceEEEEEec
Confidence             221 1    235799999987

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.91  E-value=8.5e-10  Score=90.41  Aligned_cols=97  Identities=12%  Similarity=0.193  Sum_probs=67.5

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCc---ccccccccccCCCCCcchhhhhhhhhhc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGL---FGLYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGL---i~~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      .-.+|||+|||.|.++..|.+++   |+.+.+++.    .++.+.++.-   +..++.-.+.++.-+.+||+|.|..++.
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  118 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEK----MLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALH  118 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHH----HHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHH----HHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecccc
Confidence            34689999999999999998774   444544332    4444444432   2222221223332248999999998888


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      +..+   ...+|.++-|+|||||.+++.+.
T Consensus       119 ~~~~---~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          119 YVED---VARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             GCSC---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccch---HHHHHHHHHHhcCcCcEEEEEeC
Confidence            7754   46899999999999999999754

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.91  E-value=1.8e-09  Score=91.94  Aligned_cols=123  Identities=14%  Similarity=0.093  Sum_probs=75.1

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCC-------------C---ChhhHHh---------------hCc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESP-------------D---TLPIIYE---------------RGL  115 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~-------------~---~l~~i~e---------------RGL  115 (223)
                      .-.+|||+|||+|.++..++..+   |+.+.++|..-.             +   ....+.+               |.-
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  134 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence            45789999999998888776664   666777653111             0   0000000               000


Q ss_pred             c--cccccccc--cCCCC-Ccchhhhhhhhhhccc-ccccchhHHHHhhhhcccCCcEEEEeccHH--------------
Q 027471          116 F--GLYHDWCE--SFNTY-PRTYDLLHADHLFSTI-KKRCSLKAVVAEVDRILRPDGNLILRDDAE--------------  175 (223)
Q Consensus       116 i--~~~~dwce--~f~ty-PrtyDllH~~~lfs~~-~~rC~i~~vl~E~DRILRPgG~~ii~D~~~--------------  175 (223)
                      +  -...|-.+  .|+.. ..+||+|.|..++++. .+.-.+..+|.++.|+|||||.|++++...              
T Consensus       135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~  214 (263)
T 2a14_A          135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV  214 (263)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred             hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeecc
Confidence            1  01222222  12222 3689999999888874 333345689999999999999999995211              


Q ss_pred             --HHHHHHHHHHhCCCeeE
Q 027471          176 --TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       176 --~~~~i~~i~~~l~W~~~  192 (223)
                        ..+.+.+++..--.+..
T Consensus       215 ~~~~~~l~~~l~~aGF~i~  233 (263)
T 2a14_A          215 ALEKGEVEQAVLDAGFDIE  233 (263)
T ss_dssp             CCCHHHHHHHHHHTTEEEE
T ss_pred             ccCHHHHHHHHHHCCCEEE
Confidence              24567777776666553

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.91  E-value=5.5e-09  Score=91.08  Aligned_cols=134  Identities=12%  Similarity=0.131  Sum_probs=86.1

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc---cc-ccccccccCCCCCcchhhhhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL---FG-LYHDWCESFNTYPRTYDLLHAD  139 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL---i~-~~~dwce~f~tyPrtyDllH~~  139 (223)
                      ... .+|||+|||.|.++..|.++    .++++.+ |.......+.+.+.|+   +- ..+|   .+..+|..||++.+.
T Consensus       166 ~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~D~v~~~  240 (334)
T 2ip2_A          166 FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGD---MLQEVPSNGDIYLLS  240 (334)
T ss_dssp             CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESC---TTTCCCSSCSEEEEE
T ss_pred             CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCC---CCCCCCCCCCEEEEc
Confidence            344 89999999999999999765    4666666 5433222222223343   22 2333   233467889999999


Q ss_pred             hhhcccccccchhHHHHhhhhcccCCcEEEEeccH-------H------------------HHHHHHHHHHhCCCeeEE-
Q 027471          140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA-------E------------------TIVEVEDLVKSLHWDVRM-  193 (223)
Q Consensus       140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~-------~------------------~~~~i~~i~~~l~W~~~~-  193 (223)
                      ++++++.+. ....+|.++.|+|||||.+++.|..       .                  ..++++++++.-.++... 
T Consensus       241 ~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~  319 (334)
T 2ip2_A          241 RIIGDLDEA-ASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERI  319 (334)
T ss_dssp             SCGGGCCHH-HHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred             hhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEE
Confidence            999888642 2368999999999999999998421       0                  123455566666665432 


Q ss_pred             eecCCCeeEEEEEe
Q 027471          194 IYTNDNQGMLCVHK  207 (223)
Q Consensus       194 ~~~~~~e~~L~~~K  207 (223)
                      ........++.++|
T Consensus       320 ~~~~~~~~~i~~~~  333 (334)
T 2ip2_A          320 VDLPMETRMIVAAR  333 (334)
T ss_dssp             EEETTTEEEEEEEE
T ss_pred             EECCCCCEEEEEEe
Confidence            22234466777766

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.90  E-value=5e-10  Score=90.38  Aligned_cols=127  Identities=11%  Similarity=0.097  Sum_probs=79.8

Q ss_pred             eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC--cchhhhhhhhhhccc
Q 027471           72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP--RTYDLLHADHLFSTI  145 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP--rtyDllH~~~lfs~~  145 (223)
                      .+|||+|||.|.++..|+..    .|+.+.++|.......+.+...|+.. +.-.+..+..++  .+||+|.|..+    
T Consensus        67 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~i~~~~~----  141 (207)
T 1jsx_A           67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPSEPPFDGVISRAF----  141 (207)
T ss_dssp             SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCCCSCEEEEECSCS----
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCccCCcCEEEEecc----
Confidence            58999999999999888753    46666665442221222233346532 111123443333  78999988532    


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEE----e--ecCCCeeEEEEEec
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM----I--YTNDNQGMLCVHKT  208 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~----~--~~~~~e~~L~~~K~  208 (223)
                         .....++.++.|+|+|||++++.......+.++.+.+  .|+...    .  +......+++++|+
T Consensus       142 ---~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~  205 (207)
T 1jsx_A          142 ---ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN  205 (207)
T ss_dssp             ---SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred             ---CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence               2356899999999999999999865555556666655  676542    1  12345677777764

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.90  E-value=1.2e-09  Score=89.62  Aligned_cols=112  Identities=20%  Similarity=0.205  Sum_probs=79.0

Q ss_pred             ceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcccccccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCS  150 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC~  150 (223)
                      -.+|||+|||.|.++..|.++  +.+.+++.    .++.+.++++--...| .+.++.-+.+||+|.|..++.+..+   
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~----~~~~a~~~~~~~~~~d-~~~~~~~~~~fD~v~~~~~l~~~~~---  117 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK--IGVEPSER----MAEIARKRGVFVLKGT-AENLPLKDESFDFALMVTTICFVDD---  117 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC--EEEESCHH----HHHHHHHTTCEEEECB-TTBCCSCTTCEEEEEEESCGGGSSC---
T ss_pred             CCcEEEeCCCCCHHHHHHHHH--hccCCCHH----HHHHHHhcCCEEEEcc-cccCCCCCCCeeEEEEcchHhhccC---
Confidence            458999999999999999988  55555332    5666666654322222 2233322379999999998887754   


Q ss_pred             hhHHHHhhhhcccCCcEEEEeccHH------------------------HHHHHHHHHHhCCCeeE
Q 027471          151 LKAVVAEVDRILRPDGNLILRDDAE------------------------TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       151 i~~vl~E~DRILRPgG~~ii~D~~~------------------------~~~~i~~i~~~l~W~~~  192 (223)
                      ...+|.++.|+|+|||.+++.+...                        ..+.+.++++...++..
T Consensus       118 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~  183 (219)
T 1vlm_A          118 PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF  183 (219)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEE
Confidence            3689999999999999999984321                        23567777777777754

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.90  E-value=1.7e-09  Score=88.84  Aligned_cols=137  Identities=14%  Similarity=0.045  Sum_probs=86.1

Q ss_pred             ceEEEeeCCc-hHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCc-ccccccccccCCCCC-cchhhhhhhhhhcc
Q 027471           71 VRNVMDMRAV-YGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNTYP-RTYDLLHADHLFST  144 (223)
Q Consensus        71 iRnvLDmgaG-~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~tyP-rtyDllH~~~lfs~  144 (223)
                      -.+|||+||| .|.++..|++.   .|+.+.+.|.......+.+...|+ +-+++.-.+.+..++ .+||+|-|.-.|..
T Consensus        56 ~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~  135 (230)
T 3evz_A           56 GEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYYD  135 (230)
T ss_dssp             SCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC-
T ss_pred             CCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCcC
Confidence            3689999999 99999888765   466666655432223333344465 223332112355565 89999998755543


Q ss_pred             ccc----------------ccchhHHHHhhhhcccCCcEEEEe--ccHHHHHHHHHHHHhCCCeeEEeecC---CCeeEE
Q 027471          145 IKK----------------RCSLKAVVAEVDRILRPDGNLILR--DDAETIVEVEDLVKSLHWDVRMIYTN---DNQGML  203 (223)
Q Consensus       145 ~~~----------------rC~i~~vl~E~DRILRPgG~~ii~--D~~~~~~~i~~i~~~l~W~~~~~~~~---~~e~~L  203 (223)
                      ..+                ...+..++.++.|+|||||.+++.  ........+.+.++...|++......   .--.+|
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l  215 (230)
T 3evz_A          136 KPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGTRWRHSL  215 (230)
T ss_dssp             --------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC-CEEEE
T ss_pred             CccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCCeEEEEE
Confidence            221                112368999999999999999985  33456778888888889987644322   234455


Q ss_pred             EEEe
Q 027471          204 CVHK  207 (223)
Q Consensus       204 ~~~K  207 (223)
                      ..+|
T Consensus       216 ~f~~  219 (230)
T 3evz_A          216 IFFK  219 (230)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            5554

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.89  E-value=9.3e-10  Score=92.80  Aligned_cols=98  Identities=20%  Similarity=0.278  Sum_probs=67.3

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhcccc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIK  146 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~  146 (223)
                      .-.+|||+|||.|.++..|.+++  |+.+.++|.    .++.+.++.....+..-.+.++ ++ .+||+|.|.+.+.++.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~----~l~~a~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~~  128 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKE----MLEVAREKGVKNVVEAKAEDLP-FPSGAFEAVLALGDVLSYV  128 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHH----HHHHHHHHTCSCEEECCTTSCC-SCTTCEEEEEECSSHHHHC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHH----HHHHHHhhcCCCEEECcHHHCC-CCCCCEEEEEEcchhhhcc
Confidence            34689999999999999999885  444544332    5556666543112221112233 44 8999999977555553


Q ss_pred             cccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          147 KRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       147 ~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      ..  ...+|.|+.|+|||||.+++....
T Consensus       129 ~~--~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          129 EN--KDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             SC--HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cc--HHHHHHHHHHHcCCCeEEEEEeCC
Confidence            22  579999999999999999998543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.89  E-value=1.3e-09  Score=95.69  Aligned_cols=139  Identities=13%  Similarity=0.154  Sum_probs=89.3

Q ss_pred             CCCC-ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC----CCcchhhhh
Q 027471           67 NWSF-VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT----YPRTYDLLH  137 (223)
Q Consensus        67 ~~~~-iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t----yPrtyDllH  137 (223)
                      +... ..+|||+|||.|.++..|.++    .++++.+ |.......+.+.+.|+..-+.--+..|..    .|..||++.
T Consensus       175 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~  253 (352)
T 3mcz_A          175 GVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVM  253 (352)
T ss_dssp             GGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEE
T ss_pred             CCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEE
Confidence            3444 789999999999999999765    3445554 32111122333344653312111222222    457899999


Q ss_pred             hhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH-------H--------------------HHHHHHHHHHhCCCe
Q 027471          138 ADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA-------E--------------------TIVEVEDLVKSLHWD  190 (223)
Q Consensus       138 ~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~-------~--------------------~~~~i~~i~~~l~W~  190 (223)
                      |.++++++.+. ....+|.++.|+|||||.+++.|..       .                    ....++++++.-.++
T Consensus       254 ~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  332 (352)
T 3mcz_A          254 LNDCLHYFDAR-EAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLA  332 (352)
T ss_dssp             EESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCE
T ss_pred             EecccccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCc
Confidence            99999988752 2368999999999999999997420       0                    023456666666676


Q ss_pred             eEEeecCCCeeEEEEEec
Q 027471          191 VRMIYTNDNQGMLCVHKT  208 (223)
Q Consensus       191 ~~~~~~~~~e~~L~~~K~  208 (223)
                      ... ...+...+++++|+
T Consensus       333 ~~~-~~~g~~~l~~a~kp  349 (352)
T 3mcz_A          333 VGE-RSIGRYTLLIGQRS  349 (352)
T ss_dssp             EEE-EEETTEEEEEEECC
T ss_pred             eee-eccCceEEEEEecC
Confidence            543 23345778888885

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.89  E-value=1.1e-09  Score=93.50  Aligned_cols=127  Identities=17%  Similarity=0.206  Sum_probs=82.8

Q ss_pred             eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc-ccccccccccCCC-CC-cchhhhhhhhhhcccc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNT-YP-RTYDLLHADHLFSTIK  146 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~t-yP-rtyDllH~~~lfs~~~  146 (223)
                      .+|||+|||.|.++.++++.+  |+.+.+.|.......+.+...|+ +.+++   ..+.. +| .+||+|.|..++..  
T Consensus       122 ~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~---~d~~~~~~~~~fD~Vv~n~~~~~--  196 (254)
T 2nxc_A          122 DKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLE---GSLEAALPFGPFDLLVANLYAEL--  196 (254)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEE---SCHHHHGGGCCEEEEEEECCHHH--
T ss_pred             CEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEE---CChhhcCcCCCCCEEEECCcHHH--
Confidence            589999999999999888774  55566555432222222223354 22222   22222 44 78999988644332  


Q ss_pred             cccchhHHHHhhhhcccCCcEEEEeccH-HHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471          147 KRCSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK  207 (223)
Q Consensus       147 ~rC~i~~vl~E~DRILRPgG~~ii~D~~-~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K  207 (223)
                          +..++.++.|+|||||.+++++.. .....+.+.++...++.......+.-..|+++|
T Consensus       197 ----~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~l~~~k  254 (254)
T 2nxc_A          197 ----HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR  254 (254)
T ss_dssp             ----HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEC
T ss_pred             ----HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEeccCCeEEEEEEC
Confidence                458899999999999999998543 346778888888888875443444445555554

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.88  E-value=5.4e-10  Score=89.53  Aligned_cols=130  Identities=14%  Similarity=0.200  Sum_probs=79.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhC----ccc-ccccccccCCCCC-cchhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERG----LFG-LYHDWCESFNTYP-RTYDLLHADHL  141 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRG----Li~-~~~dwce~f~tyP-rtyDllH~~~l  141 (223)
                      -.+|||+|||.|.++..|.+.   .|+.+.++|.    .++.+.++.    -+- ...|. ..++ ++ .+||+|.|...
T Consensus        43 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~----~~~~a~~~~~~~~~i~~~~~d~-~~~~-~~~~~fD~v~~~~~  116 (215)
T 2pxx_A           43 EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSV----VVAAMQACYAHVPQLRWETMDV-RKLD-FPSASFDVVLEKGT  116 (215)
T ss_dssp             TCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHH----HHHHHHHHTTTCTTCEEEECCT-TSCC-SCSSCEEEEEEESH
T ss_pred             CCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHH----HHHHHHHhcccCCCcEEEEcch-hcCC-CCCCcccEEEECcc
Confidence            357999999999999999876   4566665443    333333331    122 22222 2232 44 89999999877


Q ss_pred             hcccc------------cccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHH--HhCCCeeEEeecCC--CeeEEEE
Q 027471          142 FSTIK------------KRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLV--KSLHWDVRMIYTND--NQGMLCV  205 (223)
Q Consensus       142 fs~~~------------~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~--~~l~W~~~~~~~~~--~e~~L~~  205 (223)
                      |++..            +......+|.|+.|+|||||.+++.+....-. ...++  ....|......-.+  .--+.++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (215)
T 2pxx_A          117 LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHF-RTRHYAQAYYGWSLRHATYGSGFHFHLYLM  195 (215)
T ss_dssp             HHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHH-HHHHHCCGGGCEEEEEEEESGGGCEEEEEE
T ss_pred             hhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHH-HHHHHhccccCcEEEEEEecCcceEEEEEE
Confidence            76543            12245699999999999999999987654321 22333  33467754322121  2335556


Q ss_pred             Ee
Q 027471          206 HK  207 (223)
Q Consensus       206 ~K  207 (223)
                      +|
T Consensus       196 ~~  197 (215)
T 2pxx_A          196 HK  197 (215)
T ss_dssp             EE
T ss_pred             Ee
Confidence            55

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.88  E-value=2e-10  Score=96.89  Aligned_cols=104  Identities=14%  Similarity=0.162  Sum_probs=66.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCc---ccccccccccCCC-CCcchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGL---FGLYHDWCESFNT-YPRTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGL---i~~~~dwce~f~t-yPrtyDllH~~~lfs  143 (223)
                      -.+|||+|||.|.++..|.+.   .|+.+.+++.......+...+.|+   +..++.-++.++. -+.+||+|.|..+++
T Consensus        65 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~  144 (298)
T 1ri5_A           65 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFH  144 (298)
T ss_dssp             TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGG
T ss_pred             CCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchhh
Confidence            358999999999999888765   455566544422212222223344   2233321222232 248999999988876


Q ss_pred             cc-ccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          144 TI-KKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       144 ~~-~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      +. .+.-....+|.|+.|+|||||.+++....
T Consensus       145 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          145 YAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             GGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             hhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            52 22334568999999999999999998654

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.88  E-value=6.6e-10  Score=89.33  Aligned_cols=110  Identities=15%  Similarity=0.163  Sum_probs=70.5

Q ss_pred             EEEeeCCchHHHHHHhhCCCeEE--EEecCCCCCCChhhHHhh----Cc-ccccccccccCCCCC-cchhhhhhhhhhcc
Q 027471           73 NVMDMRAVYGGFAAALKDLKVWV--MNVVPIESPDTLPIIYER----GL-FGLYHDWCESFNTYP-RTYDLLHADHLFST  144 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~~V~v--mnv~p~~~~~~l~~i~eR----GL-i~~~~dwce~f~tyP-rtyDllH~~~lfs~  144 (223)
                      +|||+|||.|.++.+|.+.+.-+  +.+++.    .++.+.++    |+ +..+..-.+.++ ++ .+||+|.|.  |.+
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~--~~~  104 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLGYEVTAVDQSSV----GLAKAKQLAQEKGVKITTVQSNLADFD-IVADAWEGIVSI--FCH  104 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTTCEEEEECSSHH----HHHHHHHHHHHHTCCEEEECCBTTTBS-CCTTTCSEEEEE--CCC
T ss_pred             CEEEECCCCCHhHHHHHhCCCeEEEEECCHH----HHHHHHHHHHhcCCceEEEEcChhhcC-CCcCCccEEEEE--hhc
Confidence            89999999999999999886533  333322    33333333    44 222221112222 44 899999984  334


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEeccH-----------------HHHHHHHHHHHhCCCeeE
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRDDA-----------------ETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~~-----------------~~~~~i~~i~~~l~W~~~  192 (223)
                      + +......+|.++.|+|||||.+++.+..                 -..+++.++++  .|++.
T Consensus       105 ~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~  166 (202)
T 2kw5_A          105 L-PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWL  166 (202)
T ss_dssp             C-CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEE
T ss_pred             C-CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEE
Confidence            3 2234568999999999999999998321                 12366777776  67664

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.88  E-value=5.8e-10  Score=100.56  Aligned_cols=115  Identities=18%  Similarity=0.230  Sum_probs=79.7

Q ss_pred             CceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh---------C-c----ccccccccccCC---
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER---------G-L----FGLYHDWCESFN---  127 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR---------G-L----i~~~~dwce~f~---  127 (223)
                      .-.+|||+|||+|.++..|++.     .|+.+.++|.    .++.+.++         | +    +-.++.-.+.+.   
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~----~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~  158 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDN----QLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE  158 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHH----HHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHH----HHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc
Confidence            3468999999999998888664     4666776554    44444444         5 2    222322222331   


Q ss_pred             --CCC-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH-----------------------HHHHHHH
Q 027471          128 --TYP-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA-----------------------ETIVEVE  181 (223)
Q Consensus       128 --tyP-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~-----------------------~~~~~i~  181 (223)
                        .+| .+||+|+|..++.+..+   ...+|.|+.|+|||||++++.+..                       -....+.
T Consensus       159 ~~~~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (383)
T 4fsd_A          159 PEGVPDSSVDIVISNCVCNLSTN---KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFR  235 (383)
T ss_dssp             SCCCCTTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHH
T ss_pred             cCCCCCCCEEEEEEccchhcCCC---HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHH
Confidence              344 89999999999988765   369999999999999999998421                       1126677


Q ss_pred             HHHHhCCCee
Q 027471          182 DLVKSLHWDV  191 (223)
Q Consensus       182 ~i~~~l~W~~  191 (223)
                      ++++.-.++.
T Consensus       236 ~ll~~aGF~~  245 (383)
T 4fsd_A          236 RLVAEAGFRD  245 (383)
T ss_dssp             HHHHHTTCCC
T ss_pred             HHHHHCCCce
Confidence            8888777764

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.87  E-value=9.9e-10  Score=86.01  Aligned_cols=115  Identities=21%  Similarity=0.245  Sum_probs=73.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc---ccc-cccccccCCCCCcchhhhhhhhhhcc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL---FGL-YHDWCESFNTYPRTYDLLHADHLFST  144 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL---i~~-~~dwce~f~tyPrtyDllH~~~lfs~  144 (223)
                      -.+|||+|||.|.++..|.+..  |+.+.+.|.......+.+...|+   +-+ ..|+.+.++.. .+||+|.+...+.+
T Consensus        34 ~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~~~  112 (192)
T 1l3i_A           34 NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDIDIAVVGGSGGE  112 (192)
T ss_dssp             TCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEEEEEESCCTTC
T ss_pred             CCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCCEEEECCchHH
Confidence            3589999999999999998875  44455433211111222223344   112 22222222211 58999988765532


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEecc-HHHHHHHHHHHHhCCCeeE
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~-~~~~~~i~~i~~~l~W~~~  192 (223)
                            +..++.++.|+|+|||.+++.+. .+...++.++++...|++.
T Consensus       113 ------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~  155 (192)
T 1l3i_A          113 ------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN  155 (192)
T ss_dssp             ------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred             ------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceE
Confidence                  46899999999999999999764 4556777888887777554

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.87  E-value=3.7e-10  Score=96.07  Aligned_cols=118  Identities=13%  Similarity=0.120  Sum_probs=77.7

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc-ccccccccccCCC--CCcchhhhhhhhhhcc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNT--YPRTYDLLHADHLFST  144 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~t--yPrtyDllH~~~lfs~  144 (223)
                      .-.+|||+|||.|.++.+|++++  |+.+.+++.......+.+.+.|+ +-.+.   ..+..  ++.+||+|.|..+|.+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~fD~i~~~~~~~~  196 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTAL---YDINAANIQENYDFIVSTVVFMF  196 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE---CCGGGCCCCSCEEEEEECSSGGG
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEE---eccccccccCCccEEEEccchhh
Confidence            35689999999999999998885  44455544322222333344465 11222   23322  2689999999999987


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEeccHH--------------HHHHHHHHHHhCCCeeEE
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRDDAE--------------TIVEVEDLVKSLHWDVRM  193 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~--------------~~~~i~~i~~~l~W~~~~  193 (223)
                      ... -.+..+|.++.|+|||||.+++.....              ....+++++..  |++..
T Consensus       197 ~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~  256 (286)
T 3m70_A          197 LNR-ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLE  256 (286)
T ss_dssp             SCG-GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEE
T ss_pred             CCH-HHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEE
Confidence            743 346789999999999999987752110              13567777666  87653

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.87  E-value=1.1e-09  Score=90.98  Aligned_cols=101  Identities=17%  Similarity=0.156  Sum_probs=61.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc-ccccccccccCCCCCcchhhhhhh-hhhcccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNTYPRTYDLLHAD-HLFSTIK  146 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~tyPrtyDllH~~-~lfs~~~  146 (223)
                      -.+|||+|||.|.++..|++++  |+.+.++|.......+...+.|+ +-.++.-...++ ++.+||+|.|. ..+.+. 
T Consensus        42 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~-  119 (252)
T 1wzn_A           42 VRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-FKNEFDAVTMFFSTIMYF-  119 (252)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-CCSCEEEEEECSSGGGGS-
T ss_pred             CCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc-cCCCccEEEEcCCchhcC-
Confidence            4689999999999999998875  44455444322111222223344 222221111222 45889999875 233332 


Q ss_pred             cccchhHHHHhhhhcccCCcEEEEecc
Q 027471          147 KRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       147 ~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      +.-....+|.++.|+|+|||.+++.-+
T Consensus       120 ~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          120 DEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            222356899999999999999998643

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.87  E-value=1.9e-09  Score=95.22  Aligned_cols=141  Identities=21%  Similarity=0.234  Sum_probs=88.5

Q ss_pred             CCCCceEEEeeCCchHHHHHHhhCC--C--eEEEEecCCCCCCChhhHHhhCcccccccccccC-CCCCcchhhhhhhhh
Q 027471           67 NWSFVRNVMDMRAVYGGFAAALKDL--K--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF-NTYPRTYDLLHADHL  141 (223)
Q Consensus        67 ~~~~iRnvLDmgaG~GgFAA~L~~~--~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f-~tyPrtyDllH~~~l  141 (223)
                      +.....+|||+|||.|.++..|.++  +  ++++.+ |.......+.+.+.|+..-+.--+..+ ..+|..||++.|.++
T Consensus       179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~v  257 (374)
T 1qzz_A          179 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFV  257 (374)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESC
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEecc
Confidence            3445679999999999999999765  3  444554 332111222333346532111112232 346666999999999


Q ss_pred             hcccccccchhHHHHhhhhcccCCcEEEEecc--H--H-----------------------HHHHHHHHHHhCCCeeEE-
Q 027471          142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRDD--A--E-----------------------TIVEVEDLVKSLHWDVRM-  193 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~--~--~-----------------------~~~~i~~i~~~l~W~~~~-  193 (223)
                      ++++.+. ....+|.++.|+|||||++++.|.  .  +                       ..++++++++.-.++... 
T Consensus       258 l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~  336 (374)
T 1qzz_A          258 LLNWSDE-DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE  336 (374)
T ss_dssp             GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred             ccCCCHH-HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence            9887652 125899999999999999998766  2  1                       123556667776776542 


Q ss_pred             eecCCCe-----eEEEEEecc
Q 027471          194 IYTNDNQ-----GMLCVHKTY  209 (223)
Q Consensus       194 ~~~~~~e-----~~L~~~K~~  209 (223)
                      .......     .++.|+|.=
T Consensus       337 ~~~~~~~~~~~~~~i~~~~~~  357 (374)
T 1qzz_A          337 RTSGSTTLPFDFSILEFTAVS  357 (374)
T ss_dssp             EEECCSSCSSCEEEEEEEECC
T ss_pred             EECCCCcccCCcEEEEEEECc
Confidence            2223334     788888864

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.87  E-value=3.8e-10  Score=100.94  Aligned_cols=102  Identities=10%  Similarity=0.202  Sum_probs=69.2

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC----CCcchhhhhhhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT----YPRTYDLLHADH  140 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t----yPrtyDllH~~~  140 (223)
                      ...++|||+|||.|.++.+|+++    .|+++.+ |.......+.+.+.|+.+-+.--+..|..    +|.+||++.+..
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~  256 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ  256 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence            45689999999999999999763    3566665 43212122333334653211111123332    678999999999


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +++++.+. ....+|.++-|+|||||.+++.|
T Consensus       257 vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          257 FLDCFSEE-EVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             CSTTSCHH-HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             hhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEe
Confidence            99888753 23588999999999999999964

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.87  E-value=3e-09  Score=81.46  Aligned_cols=127  Identities=13%  Similarity=0.145  Sum_probs=77.0

Q ss_pred             eEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccCC------C-CC-cchhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN------T-YP-RTYDLLHA  138 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~------t-yP-rtyDllH~  138 (223)
                      .+|||+|||.|.++.+|.++     .|+.+.+.+ ...-       ..+--...|.. .++      . ++ ++||+|.+
T Consensus        24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-------~~~~~~~~d~~-~~~~~~~~~~~~~~~~~D~i~~   94 (180)
T 1ej0_A           24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-------VGVDFLQGDFR-DELVMKALLERVGDSKVQVVMS   94 (180)
T ss_dssp             CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-------TTEEEEESCTT-SHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-------CcEEEEEcccc-cchhhhhhhccCCCCceeEEEE
Confidence            48999999999999988654     466777776 3221       11111222221 111      0 44 78999999


Q ss_pred             hhhhcccccc--c------chhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCeeEEee------cCCCeeEE
Q 027471          139 DHLFSTIKKR--C------SLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIY------TNDNQGML  203 (223)
Q Consensus       139 ~~lfs~~~~r--C------~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~~~~~~------~~~~e~~L  203 (223)
                      ...++.....  .      ....++.++.|+|||||.+++..... ....+.+.++. .|......      ....|.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  173 (180)
T 1ej0_A           95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVYI  173 (180)
T ss_dssp             CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCEEEE
T ss_pred             CCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCceEEE
Confidence            7666543321  0      11588999999999999999974322 23344444444 35543211      23478999


Q ss_pred             EEEec
Q 027471          204 CVHKT  208 (223)
Q Consensus       204 ~~~K~  208 (223)
                      +|++.
T Consensus       174 ~~~~~  178 (180)
T 1ej0_A          174 VATGR  178 (180)
T ss_dssp             EEEEE
T ss_pred             EEccC
Confidence            98763

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.86  E-value=6.5e-10  Score=92.47  Aligned_cols=100  Identities=13%  Similarity=0.127  Sum_probs=62.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhh----Cc-ccc-cccccccCCCCC-cchhhhhh-h
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYER----GL-FGL-YHDWCESFNTYP-RTYDLLHA-D  139 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eR----GL-i~~-~~dwce~f~tyP-rtyDllH~-~  139 (223)
                      -.+|||+|||+|.++..|.+.+   |+.+.++|.    .++.+.++    |. +-+ ..|+.+-...++ ++||+|.| .
T Consensus        61 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~----~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~  136 (236)
T 1zx0_A           61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDG----VFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT  136 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHH----HHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHH----HHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECC
Confidence            4689999999999999998863   455555443    44444333    21 112 223322222355 89999988 3


Q ss_pred             hhhc-ccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          140 HLFS-TIKKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       140 ~lfs-~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      ..++ ...+.-..+.++.|+.|+|||||.+++.+..
T Consensus       137 ~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             cccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            2211 1111222347899999999999999987543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.86  E-value=5.1e-09  Score=89.77  Aligned_cols=137  Identities=14%  Similarity=0.082  Sum_probs=87.1

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcc--cccccccccCCC---CCcchhhhhhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLF--GLYHDWCESFNT---YPRTYDLLHAD  139 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi--~~~~dwce~f~t---yPrtyDllH~~  139 (223)
                      ..-.+|||+|||.|..+..|+..    .|+.+..++.......+.+.+-|+-  -+++.-.+.++.   ++.+||+|-|.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            34568999999999988777643    5677766554332233344445763  344432333332   34899999885


Q ss_pred             hhhcccccccchhHHHHhhhhcccCCcEEEEec---cHHHHHHHHHHHHhCCCeeEEee------cCCCeeEEEEEeccc
Q 027471          140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD---DAETIVEVEDLVKSLHWDVRMIY------TNDNQGMLCVHKTYW  210 (223)
Q Consensus       140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D---~~~~~~~i~~i~~~l~W~~~~~~------~~~~e~~L~~~K~~w  210 (223)
                      .+       ..++.++.++.|+|||||.+++-.   ..+.+..+++.++.+.+......      .+..-.+++.+|.-.
T Consensus       159 a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~~~  231 (249)
T 3g89_A          159 AV-------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAP  231 (249)
T ss_dssp             SS-------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEECSC
T ss_pred             Cc-------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeCCC
Confidence            22       345789999999999999998864   35566677777788888764221      122345566677544


Q ss_pred             CC
Q 027471          211 RP  212 (223)
Q Consensus       211 ~~  212 (223)
                      ++
T Consensus       232 t~  233 (249)
T 3g89_A          232 TP  233 (249)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.86  E-value=1.8e-09  Score=92.39  Aligned_cols=135  Identities=12%  Similarity=0.120  Sum_probs=85.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcc--c-ccccccccCCCCCcchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLF--G-LYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi--~-~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      -.+|||+|||.|.++.+|++.    .|+.+.++|..-....+.+...|+.  - ...|+.+.++  +.+||+|-|..-|.
T Consensus       110 ~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npPy~  187 (276)
T 2b3t_A          110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPPYI  187 (276)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCCCB
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCCCC
Confidence            357999999999999998743    4565655443211111222223542  2 2234333221  47899998863222


Q ss_pred             -------------ccccc---------cchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE--EeecCCC
Q 027471          144 -------------TIKKR---------CSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR--MIYTNDN  199 (223)
Q Consensus       144 -------------~~~~r---------C~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~--~~~~~~~  199 (223)
                                   +....         ..+..++.++-|+|+|||++++.........++++++...|+..  ..|..+.
T Consensus       188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d~~g~  267 (276)
T 2b3t_A          188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGDN  267 (276)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTTSS
T ss_pred             CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence                         11110         12357899999999999999998766666778888777777532  3455678


Q ss_pred             eeEEEEEe
Q 027471          200 QGMLCVHK  207 (223)
Q Consensus       200 e~~L~~~K  207 (223)
                      +++++++|
T Consensus       268 ~r~~~~~~  275 (276)
T 2b3t_A          268 ERVTLGRY  275 (276)
T ss_dssp             EEEEEEEC
T ss_pred             CcEEEEEE
Confidence            99999875

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.85  E-value=1.4e-09  Score=94.89  Aligned_cols=134  Identities=11%  Similarity=0.117  Sum_probs=73.7

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCC-ChhhH-HhhCc-ccccccccccCCCCC-cchhhhhhhhhhccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPD-TLPII-YERGL-FGLYHDWCESFNTYP-RTYDLLHADHLFSTI  145 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~-~l~~i-~eRGL-i~~~~dwce~f~tyP-rtyDllH~~~lfs~~  145 (223)
                      ..+|||+|||.|+|+..|+++ .|+.+.++|..... ..+.. ...|. +-.+++ +..+..+| .+||+|-|+..+. .
T Consensus        75 g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~-~~D~~~l~~~~fD~V~sd~~~~-~  152 (265)
T 2oxt_A           75 TGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKS-RVDIHTLPVERTDVIMCDVGES-S  152 (265)
T ss_dssp             CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEEC-SCCTTTSCCCCCSEEEECCCCC-C
T ss_pred             CCEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEec-ccCHhHCCCCCCcEEEEeCccc-C
Confidence            468999999999999999886 68888888841110 00000 00111 111210 12333344 8999999975421 1


Q ss_pred             ccc----cchhHHHHhhhhcccCCc--EEEEec----cHHHHHHHHHHHHhCCCeeEEe-e---cCCCeeEEEEEe
Q 027471          146 KKR----CSLKAVVAEVDRILRPDG--NLILRD----DAETIVEVEDLVKSLHWDVRMI-Y---TNDNQGMLCVHK  207 (223)
Q Consensus       146 ~~r----C~i~~vl~E~DRILRPgG--~~ii~D----~~~~~~~i~~i~~~l~W~~~~~-~---~~~~e~~L~~~K  207 (223)
                      .+.    -....+|.++.|+|||||  .|++..    ..++++.++.+.+.+. .+... .   .+..|.+++|.+
T Consensus       153 ~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~~~  227 (265)
T 2oxt_A          153 PKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTSRA  227 (265)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEESSC
T ss_pred             CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEecC
Confidence            110    000137889999999999  999863    2322233333322221 11111 1   245788888854

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.85  E-value=3.5e-09  Score=89.80  Aligned_cols=132  Identities=10%  Similarity=0.049  Sum_probs=82.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCCCC--cchhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTYP--RTYDLLHAD  139 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyP--rtyDllH~~  139 (223)
                      -++|||+|||.|.++.+|++.     .|+.+.+.|.......+.+.+.|+..    ...|..+.++..+  .+||+|.++
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d  143 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID  143 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence            478999999999999999876     35666665442222233333446642    2334333344444  499999876


Q ss_pred             hhhcccccccchhHHHHhhhhcccCCcEEEEeccHH------------HHHHHHHH----HHhCCCeeEEee---cCCCe
Q 027471          140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE------------TIVEVEDL----VKSLHWDVRMIY---TNDNQ  200 (223)
Q Consensus       140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~------------~~~~i~~i----~~~l~W~~~~~~---~~~~e  200 (223)
                      .-      ......++.++-|+|||||++++.+...            ....++++    .+.-++......   ....+
T Consensus       144 ~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~D  217 (248)
T 3tfw_A          144 AD------KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVGTKGWD  217 (248)
T ss_dssp             SC------GGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEECSTTCSE
T ss_pred             Cc------hHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecCCCCCCC
Confidence            31      1224578999999999999999974421            12233333    344456654331   13458


Q ss_pred             eEEEEEec
Q 027471          201 GMLCVHKT  208 (223)
Q Consensus       201 ~~L~~~K~  208 (223)
                      .+.+++|+
T Consensus       218 G~~i~~~~  225 (248)
T 3tfw_A          218 GFTLAWVN  225 (248)
T ss_dssp             EEEEEEEC
T ss_pred             eeEEEEEe
Confidence            89999985

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.85  E-value=1.6e-09  Score=88.90  Aligned_cols=122  Identities=13%  Similarity=0.109  Sum_probs=76.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcc--cccccccccCCC-CC-cchhhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLF--GLYHDWCESFNT-YP-RTYDLLHADHLF  142 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi--~~~~dwce~f~t-yP-rtyDllH~~~lf  142 (223)
                      -..|||+|||.|.++..|+++    .|+.+.+++.......+.+...|+.  -+++.-...++. ++ .+||+|.+....
T Consensus        42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~  121 (214)
T 1yzh_A           42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD  121 (214)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred             CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCC
Confidence            457999999999999988764    4666666554322223333345652  233221222332 54 789999887322


Q ss_pred             cc-----cccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhCCCeeE
Q 027471          143 ST-----IKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       143 s~-----~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l~W~~~  192 (223)
                      ..     ...+-....++.++.|+|+|||.+++. |..+....+.++++...|...
T Consensus       122 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~  177 (214)
T 1yzh_A          122 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN  177 (214)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred             CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeee
Confidence            11     111112357999999999999999997 455566677777666677654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.85  E-value=7.5e-10  Score=95.27  Aligned_cols=95  Identities=12%  Similarity=0.239  Sum_probs=61.3

Q ss_pred             CceEEEeeCCchHHHHH----HhhC--CCe----EEEEecCCCCCCChhhHHhh-----Ccccccccc----cccCC---
Q 027471           70 FVRNVMDMRAVYGGFAA----ALKD--LKV----WVMNVVPIESPDTLPIIYER-----GLFGLYHDW----CESFN---  127 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA----~L~~--~~V----~vmnv~p~~~~~~l~~i~eR-----GLi~~~~dw----ce~f~---  127 (223)
                      .-.+|||+|||.|.++.    .+..  .++    +.+..++    +.++.+.++     |+..+-..|    .+.++   
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~----~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  127 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSA----EQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRM  127 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCH----HHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCH----HHHHHHHHHHHhccCCCcceEEEEecchhhhhhhh
Confidence            34689999999998654    3332  244    3333322    234444433     443221111    11232   


Q ss_pred             --CCC-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          128 --TYP-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       128 --tyP-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                        .|+ .+||+|+|..++.+..+   .+..|.|+.|+|||||.+++.
T Consensus       128 ~~~~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          128 LEKKELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             HTTTCCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccCCCceeEEEEeeeeeecCC---HHHHHHHHHHHcCCCcEEEEE
Confidence              133 89999999999999876   368999999999999999986

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.84  E-value=2.6e-09  Score=89.14  Aligned_cols=101  Identities=16%  Similarity=0.303  Sum_probs=60.7

Q ss_pred             cCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhC-ccccccccccc--CCCCCcchhhh
Q 027471           64 MGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERG-LFGLYHDWCES--FNTYPRTYDLL  136 (223)
Q Consensus        64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRG-Li~~~~dwce~--f~tyPrtyDll  136 (223)
                      ++++.+  .+|||+|||+|.++..|++.    .|+.+.++|......++.+..+. +..+..|..+.  +..++.+||+|
T Consensus        53 ~~~~~g--~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V  130 (210)
T 1nt2_A           53 LKLRGD--ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLI  130 (210)
T ss_dssp             CCCCSS--CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred             cCCCCC--CEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEE
Confidence            344443  47999999999999887653    46777665542111222222221 22223332221  12245899999


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      .|+.  .   +.-....++.|+.|+|||||.+++.
T Consensus       131 ~~~~--~---~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          131 YQDI--A---QKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             EECC--C---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEec--c---ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            8862  1   1111235689999999999999997

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.84  E-value=2.9e-09  Score=94.31  Aligned_cols=103  Identities=14%  Similarity=0.138  Sum_probs=68.3

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLF  142 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lf  142 (223)
                      .....+|||+|||.|.++.+|.++    .|+++.+ |.......+.+.+.|+.+-+.--+..+...| ..+|++.+..++
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl  266 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRIL  266 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCG
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechh
Confidence            445679999999999999999865    4555655 4322222222333466431211123333323 334999999999


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +++.+. ....+|.++-|+|||||.+++.|
T Consensus       267 h~~~d~-~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          267 YSANEQ-LSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             GGSCHH-HHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             ccCCHH-HHHHHHHHHHHhcCCCCEEEEEe
Confidence            988752 24689999999999999998875

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.84  E-value=6.5e-09  Score=88.67  Aligned_cols=123  Identities=15%  Similarity=0.200  Sum_probs=76.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCc-cc-----cccccc-ccCCC--CC-cchhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGL-FG-----LYHDWC-ESFNT--YP-RTYDLLH  137 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGL-i~-----~~~dwc-e~f~t--yP-rtyDllH  137 (223)
                      -.+|||+|||+|+|+..|++++   |+.+.++|..-    +.+..+.- ..     -+...+ +.++.  |+ .+||++-
T Consensus        38 g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~  113 (232)
T 3opn_A           38 GKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQL----AWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSF  113 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCC----CHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSS
T ss_pred             CCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHH----HHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEh
Confidence            4589999999999999998774   56677766543    33222210 00     011111 33443  34 5666654


Q ss_pred             hhhhhcccccccchhHHHHhhhhcccCCcEEEEec-------------------cH---HHHHHHHHHHHhCCCeeEEee
Q 027471          138 ADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD-------------------DA---ETIVEVEDLVKSLHWDVRMIY  195 (223)
Q Consensus       138 ~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D-------------------~~---~~~~~i~~i~~~l~W~~~~~~  195 (223)
                      ++           +..+|.|+.|+|||||.+++..                   +.   ....++..+++...|++...+
T Consensus       114 ~~-----------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~  182 (232)
T 3opn_A          114 IS-----------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT  182 (232)
T ss_dssp             SC-----------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             hh-----------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence            43           2689999999999999999861                   11   124567777888888875432


Q ss_pred             -c------CCCeeEEEEEec
Q 027471          196 -T------NDNQGMLCVHKT  208 (223)
Q Consensus       196 -~------~~~e~~L~~~K~  208 (223)
                       +      .+-|-++.++|.
T Consensus       183 ~~pi~g~~gn~e~l~~~~~~  202 (232)
T 3opn_A          183 FSPIKGGAGNVEFLVHLLKD  202 (232)
T ss_dssp             ECSSCBTTTBCCEEEEEEES
T ss_pred             EccCCCCCCCHHHHHHHhhc
Confidence             1      235667777773

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.83  E-value=7.2e-10  Score=90.86  Aligned_cols=93  Identities=16%  Similarity=0.267  Sum_probs=65.0

Q ss_pred             eEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHhh----Cc-ccccccccccCCC--CCcchhhhhhhh-hh
Q 027471           72 RNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYER----GL-FGLYHDWCESFNT--YPRTYDLLHADH-LF  142 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~eR----GL-i~~~~dwce~f~t--yPrtyDllH~~~-lf  142 (223)
                      .+|||+|||.|.++..|.+. .|+.+.++|.    .++.+.++    |. +..++   ..+..  ++.+||+|.|.. ++
T Consensus        35 ~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~~~  107 (243)
T 3d2l_A           35 KRIADIGCGTGTATLLLADHYEVTGVDLSEE----MLEIAQEKAMETNRHVDFWV---QDMRELELPEPVDAITILCDSL  107 (243)
T ss_dssp             CEEEEESCTTCHHHHHHTTTSEEEEEESCHH----HHHHHHHHHHHTTCCCEEEE---CCGGGCCCSSCEEEEEECTTGG
T ss_pred             CeEEEecCCCCHHHHHHhhCCeEEEEECCHH----HHHHHHHhhhhcCCceEEEE---cChhhcCCCCCcCEEEEeCCch
Confidence            68999999999999999887 4455555443    33333332    32 22222   22222  458999999875 77


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      .+..+......+|.++.|+|||||.++++
T Consensus       108 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A          108 NYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             GGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            77755555678999999999999999995

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.83  E-value=9.4e-10  Score=97.47  Aligned_cols=99  Identities=12%  Similarity=0.196  Sum_probs=67.8

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCC--C--eEEEEecCCCCCCChhhHHhhCccc----ccccccccCCCCCcchhhhh
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDL--K--VWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTYPRTYDLLH  137 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~--~--V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyPrtyDllH  137 (223)
                      ++.....+|||+|||.|.++.+|+++  +  ++++++.+....   +.+.+.|+..    ..+|   .|...| +||++.
T Consensus       180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~---~~~~~~~~~~~v~~~~~d---~~~~~p-~~D~v~  252 (348)
T 3lst_A          180 GDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVAR---HRLDAPDVAGRWKVVEGD---FLREVP-HADVHV  252 (348)
T ss_dssp             SCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTT---CCCCCGGGTTSEEEEECC---TTTCCC-CCSEEE
T ss_pred             CCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhc---ccccccCCCCCeEEEecC---CCCCCC-CCcEEE
Confidence            34556789999999999999999774  3  444554222111   1111233322    2333   234567 999999


Q ss_pred             hhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          138 ADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       138 ~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +.++++++.+. ....+|.|+-|+|||||.+++.|
T Consensus       253 ~~~vlh~~~d~-~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          253 LKRILHNWGDE-DSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             EESCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             EehhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence            99999988753 23589999999999999999975

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.83  E-value=9.6e-10  Score=91.26  Aligned_cols=120  Identities=7%  Similarity=0.052  Sum_probs=73.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--cc-ccccccCCC-CC-cchhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LY-HDWCESFNT-YP-RTYDLLHADHL  141 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~-~dwce~f~t-yP-rtyDllH~~~l  141 (223)
                      -..|||+|||.|.++.+|+++    .|+.+.+++.......+.+.+.|+..  ++ .|.. .++. ++ .+||.|++...
T Consensus        39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~-~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDAD-TLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGG-GHHHHCCTTSCCEEEEESC
T ss_pred             CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHH-HHHhhcCcCCcCEEEEECC
Confidence            346999999999999998764    45555554432222223333456632  33 2322 2332 44 88998876311


Q ss_pred             hc-----ccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhCCCee
Q 027471          142 FS-----TIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       142 fs-----~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l~W~~  191 (223)
                      ..     +...+.....+|.++.|+|+|||.+++. |.......+...+....|..
T Consensus       118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~  173 (213)
T 2fca_A          118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL  173 (213)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred             CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence            10     1122322468999999999999999986 56556666666655556654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.83  E-value=4.6e-10  Score=90.25  Aligned_cols=101  Identities=10%  Similarity=0.143  Sum_probs=63.5

Q ss_pred             ceEEEeeCCchHHH-HHHhhCCC--eEEEEecCCCCCCChhhHHhhCc-ccccccccccCCCCC-cchhhhhhhhhhccc
Q 027471           71 VRNVMDMRAVYGGF-AAALKDLK--VWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNTYP-RTYDLLHADHLFSTI  145 (223)
Q Consensus        71 iRnvLDmgaG~GgF-AA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~tyP-rtyDllH~~~lfs~~  145 (223)
                      -.+|||+|||.|.+ .+.+...+  |+.+.+++.......+.+.+.|. +..++.-.+.++ ++ .+||+|.|.+++.+.
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~  102 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP-FKDESMSFVYSYGTIFHM  102 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC-SCTTCEEEEEECSCGGGS
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC-CCCCceeEEEEcChHHhC
Confidence            35899999999997 45555554  55555544322212222222342 222221112233 44 899999998888776


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      . .-....++.|+.|+|||||.+++.+.
T Consensus       103 ~-~~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A          103 R-KNDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             C-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            3 23356899999999999999999853

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.82  E-value=1.8e-09  Score=93.54  Aligned_cols=112  Identities=12%  Similarity=0.095  Sum_probs=71.0

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhh-----------Cc--cccccccc
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYER-----------GL--FGLYHDWC  123 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eR-----------GL--i~~~~dwc  123 (223)
                      +.+.+......-.+|||+|||.|.++..|.+.   .|+.+.+++.    .++.+.++           +.  +..+..-+
T Consensus        24 ~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~----~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~   99 (313)
T 3bgv_A           24 FLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADV----SVKQCQQRYEDMKNRRDSEYIFSAEFITADS   99 (313)
T ss_dssp             HHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHH----HHHHHHHHHHHHHSSSCC-CCCEEEEEECCT
T ss_pred             HHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHH----HHHHHHHHHHHhhhcccccccceEEEEEecc
Confidence            45544322224568999999999999999865   4556665543    33333332           11  12233223


Q ss_pred             ccCC---CC---Ccchhhhhhhhhhccc-ccccchhHHHHhhhhcccCCcEEEEeccHH
Q 027471          124 ESFN---TY---PRTYDLLHADHLFSTI-KKRCSLKAVVAEVDRILRPDGNLILRDDAE  175 (223)
Q Consensus       124 e~f~---ty---PrtyDllH~~~lfs~~-~~rC~i~~vl~E~DRILRPgG~~ii~D~~~  175 (223)
                      +.++   .+   +.+||+|.|..+++.. .+.-....+|.++.|+|||||.++++....
T Consensus       100 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          100 SKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             TTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             cccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            3433   14   2599999998877654 333345689999999999999999986543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.82  E-value=1.9e-09  Score=88.26  Aligned_cols=132  Identities=11%  Similarity=0.084  Sum_probs=78.3

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---c-cccccccCCCCC----cchhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---L-YHDWCESFNTYP----RTYDLLH  137 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~-~~dwce~f~tyP----rtyDllH  137 (223)
                      -.+|||+|||.|.++.+|++.     .|+.+.+.|.......+.+.+.|+..   + ..|..+.++.++    .+||+|.
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~  138 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF  138 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence            468999999999999999876     35556654432222233333446633   2 223222222222    5799998


Q ss_pred             hhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHH------------HHHHHHHHH----HhCCCeeEEee---cCC
Q 027471          138 ADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE------------TIVEVEDLV----KSLHWDVRMIY---TND  198 (223)
Q Consensus       138 ~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~------------~~~~i~~i~----~~l~W~~~~~~---~~~  198 (223)
                      ++...+      ....++.++-|+|||||.+++.+...            ....++++.    ..=++......   ..+
T Consensus       139 ~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~  212 (223)
T 3duw_A          139 IDADKQ------NNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTVGSKG  212 (223)
T ss_dssp             ECSCGG------GHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETTE
T ss_pred             EcCCcH------HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEeccCCCC
Confidence            763321      23578999999999999999974322            122333333    33355554322   234


Q ss_pred             CeeEEEEEec
Q 027471          199 NQGMLCVHKT  208 (223)
Q Consensus       199 ~e~~L~~~K~  208 (223)
                      .+.+++++++
T Consensus       213 ~dG~~~~~~~  222 (223)
T 3duw_A          213 YDGFIMAVVK  222 (223)
T ss_dssp             EEEEEEEEEC
T ss_pred             CCeeEEEEEe
Confidence            6788888764

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.82  E-value=3e-09  Score=86.27  Aligned_cols=97  Identities=22%  Similarity=0.300  Sum_probs=63.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhh----Cc-ccc-cccccccCCCCC-cchhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYER----GL-FGL-YHDWCESFNTYP-RTYDLLHADHL  141 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eR----GL-i~~-~~dwce~f~tyP-rtyDllH~~~l  141 (223)
                      -.+|||+|||.|.++..|.+++  |+.+.++|.    .++.+.++    |. +-. ..|.. .++ ++ .+||+|.|..+
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~~~d~~-~~~-~~~~~~D~v~~~~~  112 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISED----MIRKAREYAKSRESNVEFIVGDAR-KLS-FEDKTFDYVIFIDS  112 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCCEEEECCTT-SCC-SCTTCEEEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHH----HHHHHHHHHHhcCCCceEEECchh-cCC-CCCCcEEEEEEcCc
Confidence            4589999999999999998874  555555443    33333322    21 222 22221 222 34 79999999877


Q ss_pred             hcccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      +..... -....++.++.|+|||||.+++.+..
T Consensus       113 ~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          113 IVHFEP-LELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             GGGCCH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hHhCCH-HHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            443321 23468999999999999999998654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.81  E-value=4.3e-09  Score=94.22  Aligned_cols=137  Identities=18%  Similarity=0.284  Sum_probs=91.1

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCCCCcchhhhh
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTYPRTYDLLH  137 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyPrtyDllH  137 (223)
                      ++.....+|||+|||.|.++..|+++    .++++.+ |.......+.+.+.|+..    ..+|   .|..+|..||++.
T Consensus       198 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d---~~~~~p~~~D~v~  273 (369)
T 3gwz_A          198 YDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGD---FFETIPDGADVYL  273 (369)
T ss_dssp             SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECC---TTTCCCSSCSEEE
T ss_pred             CCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccC---CCCCCCCCceEEE
Confidence            34556789999999999999999775    3555555 432222333344456533    2233   2334666899999


Q ss_pred             hhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH------------H------------HHHHHHHHHHhCCCeeEE
Q 027471          138 ADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA------------E------------TIVEVEDLVKSLHWDVRM  193 (223)
Q Consensus       138 ~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~------------~------------~~~~i~~i~~~l~W~~~~  193 (223)
                      |.++++++.+. ....+|.++-|+|||||++++.|..            +            ..++++++++.-.++...
T Consensus       274 ~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~  352 (369)
T 3gwz_A          274 IKHVLHDWDDD-DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVER  352 (369)
T ss_dssp             EESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEE
T ss_pred             hhhhhccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEE
Confidence            99999888752 2247999999999999999996421            0            134566777777777653


Q ss_pred             ee--cCCCeeEEEEEe
Q 027471          194 IY--TNDNQGMLCVHK  207 (223)
Q Consensus       194 ~~--~~~~e~~L~~~K  207 (223)
                      ..  ......++.|+|
T Consensus       353 ~~~~~~~~~svie~~~  368 (369)
T 3gwz_A          353 SLPCGAGPVRIVEIRR  368 (369)
T ss_dssp             EEECSSSSEEEEEEEE
T ss_pred             EEECCCCCcEEEEEEe
Confidence            32  345567777776

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.81  E-value=1e-09  Score=92.33  Aligned_cols=117  Identities=15%  Similarity=0.094  Sum_probs=72.8

Q ss_pred             CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--c-cccccccCCC-CC-cchhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--L-YHDWCESFNT-YP-RTYDLLHADH  140 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~-~~dwce~f~t-yP-rtyDllH~~~  140 (223)
                      .-..|||+|||.|.++..|+++    .|+.+.+++..-....+.+.+.|+-.  + ..|-.+.++. +| .+||.|++..
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            3468999999999999999754    36666665543332344455567643  2 2232222332 55 8999988752


Q ss_pred             hhcccc-----cccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHh
Q 027471          141 LFSTIK-----KRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKS  186 (223)
Q Consensus       141 lfs~~~-----~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~  186 (223)
                      ......     .|-.-..++.++.|+|||||.+++. |.......+..++..
T Consensus       114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~  165 (218)
T 3dxy_A          114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS  165 (218)
T ss_dssp             CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence            111111     1111236999999999999999886 555566666665544

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.81  E-value=4.6e-09  Score=91.03  Aligned_cols=138  Identities=17%  Similarity=0.189  Sum_probs=85.5

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCC--CCCcchhhhhhhhhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN--TYPRTYDLLHADHLF  142 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~--tyPrtyDllH~~~lf  142 (223)
                      ....+|||+|||.|.++..|.++    .++++.+. .......+.+.+.|+..-+.--+..+.  .+|..||+|.|.+++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l  242 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFL  242 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchh
Confidence            45678999999999999999865    35555553 211112223333465431211123333  256669999999999


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEeccHH---------------------------HHHHHHHHHHhCCCeeEEe-
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRDDAE---------------------------TIVEVEDLVKSLHWDVRMI-  194 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~---------------------------~~~~i~~i~~~l~W~~~~~-  194 (223)
                      +++.+. ....+|.++-|+|+|||++++.|...                           ..++++++++.-.++.... 
T Consensus       243 ~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~  321 (335)
T 2r3s_A          243 HHFDVA-TCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH  321 (335)
T ss_dssp             GGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred             ccCCHH-HHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence            887532 23689999999999999998864310                           0345666677666765422 


Q ss_pred             ecCCCeeEEEEEec
Q 027471          195 YTNDNQGMLCVHKT  208 (223)
Q Consensus       195 ~~~~~e~~L~~~K~  208 (223)
                      +......+++++++
T Consensus       322 ~~~~~~~~i~~~~~  335 (335)
T 2r3s_A          322 SLPTTQQQVIVAYK  335 (335)
T ss_dssp             CCTTSSSEEEEEEC
T ss_pred             ECCCCceeEEEecC
Confidence            22334456666653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.81  E-value=2.7e-09  Score=88.15  Aligned_cols=121  Identities=8%  Similarity=-0.060  Sum_probs=76.5

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC-CC--cchhhh
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT-YP--RTYDLL  136 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t-yP--rtyDll  136 (223)
                      ..+.+..  -.+|||+|||+|.++.+|+++  .|+.+.+.|.......+.+.+.|+..-+.-.+..+.. .+  ..||+|
T Consensus        49 ~~l~~~~--~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v  126 (204)
T 3njr_A           49 AALAPRR--GELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAV  126 (204)
T ss_dssp             HHHCCCT--TCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEE
T ss_pred             HhcCCCC--CCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEE
Confidence            3444444  368999999999999888876  4555665544222222333344665211111223333 22  479998


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEec-cHHHHHHHHHHHHhCCCeeE
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D-~~~~~~~i~~i~~~l~W~~~  192 (223)
                      -+...+       ..+ ++.++.|+|||||.+++.. ..+...++.+.++...+++.
T Consensus       127 ~~~~~~-------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~  175 (204)
T 3njr_A          127 FIGGGG-------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLL  175 (204)
T ss_dssp             EECSCC-------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEE
T ss_pred             EECCcc-------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEE
Confidence            776321       345 9999999999999999985 45567777777777777654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.80  E-value=1.3e-09  Score=94.55  Aligned_cols=44  Identities=27%  Similarity=0.364  Sum_probs=35.7

Q ss_pred             CCcchhhhhhhhhhcccc---cccchhHHHHhhhhcccCCcEEEEec
Q 027471          129 YPRTYDLLHADHLFSTIK---KRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       129 yPrtyDllH~~~lfs~~~---~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      .+.+||+|.|..++.+..   +...+..++.++.|+|||||+||+..
T Consensus       174 ~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          174 QTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             CCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            348999999988875432   34456799999999999999999973

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.80  E-value=4.7e-09  Score=92.44  Aligned_cols=136  Identities=20%  Similarity=0.312  Sum_probs=86.0

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC--CeEE--EEecCCCCCCChhhHHhhCccc----ccccccccCCCCCcchhhhhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL--KVWV--MNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTYPRTYDLLHAD  139 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~--~V~v--mnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyPrtyDllH~~  139 (223)
                      .....+|||+|||.|.++.+|.++  ++.+  +++ |.......+.+.+.|+.+    ..+|   .+..+|..||++.+.
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~D~v~~~  256 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGD---FFEPLPRKADAIILS  256 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECC---TTSCCSSCEEEEEEE
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCC---CCCCCCCCccEEEEc
Confidence            345678999999999999999765  3444  444 321111222233345532    2233   233466669999999


Q ss_pred             hhhcccccccchhHHHHhhhhcccCCcEEEEeccH--H------------------------HHHHHHHHHHhCCCeeEE
Q 027471          140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA--E------------------------TIVEVEDLVKSLHWDVRM  193 (223)
Q Consensus       140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~--~------------------------~~~~i~~i~~~l~W~~~~  193 (223)
                      ++++++.+. ....+|.++-|+|+|||.+++.|..  .                        ..++++++++.-.++...
T Consensus       257 ~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~  335 (360)
T 1tw3_A          257 FVLLNWPDH-DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE  335 (360)
T ss_dssp             SCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred             ccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEE
Confidence            999887642 2258999999999999999987643  1                        123456666666676542


Q ss_pred             ee-cCCC-----eeEEEEEec
Q 027471          194 IY-TNDN-----QGMLCVHKT  208 (223)
Q Consensus       194 ~~-~~~~-----e~~L~~~K~  208 (223)
                      .. ....     ..++.|+|+
T Consensus       336 ~~~~~~~~~~~~~~~i~~~~~  356 (360)
T 1tw3_A          336 VRQLPSPTIPYDLSLLVLAPA  356 (360)
T ss_dssp             EEEEECSSSSCEEEEEEEEEC
T ss_pred             EEeCCCCcccCccEEEEEEeC
Confidence            22 2222     567888874

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.79  E-value=5.5e-09  Score=88.58  Aligned_cols=122  Identities=11%  Similarity=0.185  Sum_probs=79.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCcc---cccc-cccccCCCCC-cchhhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLF---GLYH-DWCESFNTYP-RTYDLLHADHLF  142 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi---~~~~-dwce~f~tyP-rtyDllH~~~lf  142 (223)
                      -.+|||+|||.|.++..|++++   |+.+.+.|.......+.+...|+-   -+++ |..+....++ .+||+|-|+--|
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy  129 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPY  129 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC
T ss_pred             CCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCC
Confidence            4589999999999999998873   444444333222122223334553   2333 3322222354 899999986444


Q ss_pred             ccc-----------------ccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE
Q 027471          143 STI-----------------KKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       143 s~~-----------------~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~  192 (223)
                      ...                 ...+.++.++.++-|+|||||.+++.-..+....+...++...|...
T Consensus       130 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~  196 (259)
T 3lpm_A          130 FATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPK  196 (259)
T ss_dssp             -----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEE
T ss_pred             CCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceE
Confidence            221                 12356778999999999999999998777777788888888888764

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.78  E-value=9.2e-09  Score=87.53  Aligned_cols=130  Identities=14%  Similarity=0.158  Sum_probs=85.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---cc-ccccccCCCC-----Ccchhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---LY-HDWCESFNTY-----PRTYDLL  136 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~-~dwce~f~ty-----PrtyDll  136 (223)
                      -++|||+|||.|.++.+|++.     .|+.+.+.|.......+.+...|+..   ++ .|..+.++.+     +.+||+|
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V  140 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI  140 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence            468999999999999988762     57788888877666677777777743   22 2322223333     5789999


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH------------HHHHHHHHHHHhCC----CeeEEeecCCCe
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA------------ETIVEVEDLVKSLH----WDVRMIYTNDNQ  200 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~------------~~~~~i~~i~~~l~----W~~~~~~~~~~e  200 (223)
                      .++..      .-....++.++-|+|||||.+++.|..            .....++++.+.+.    ++..+.  .-.+
T Consensus       141 ~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l--p~~d  212 (242)
T 3r3h_A          141 FIDAD------KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLL--AIAD  212 (242)
T ss_dssp             EEESC------GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEE--SSSS
T ss_pred             EEcCC------hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEE--EccC
Confidence            87632      122446888999999999999997432            12234555544443    333322  2356


Q ss_pred             eEEEEEec
Q 027471          201 GMLCVHKT  208 (223)
Q Consensus       201 ~~L~~~K~  208 (223)
                      ++++++|+
T Consensus       213 G~~~~~k~  220 (242)
T 3r3h_A          213 GMFLVQPI  220 (242)
T ss_dssp             CEEEEEEC
T ss_pred             ceEEEEEc
Confidence            78888874

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.78  E-value=5.1e-09  Score=87.60  Aligned_cols=95  Identities=14%  Similarity=0.158  Sum_probs=64.2

Q ss_pred             ceEEEeeCCchHHHHHHhhC--C--CeEEEEecCCCCCCChhhHHhhCcc---c-ccccccccCC-CCCcchhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKD--L--KVWVMNVVPIESPDTLPIIYERGLF---G-LYHDWCESFN-TYPRTYDLLHADHL  141 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~--~--~V~vmnv~p~~~~~~l~~i~eRGLi---~-~~~dwce~f~-tyPrtyDllH~~~l  141 (223)
                      -.+|||+|||.|.++.+|++  .  .|+.+.+.|.......+.+.+.|+.   - ...|..+.++ ..+.+||+|.+..-
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~  151 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA  151 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc
Confidence            46899999999999999988  3  4566666554332233344445653   2 2333333344 44689999987622


Q ss_pred             hcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          142 FSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                            ......++.++-|+|||||.+++.
T Consensus       152 ------~~~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          152 ------KAQSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             ------SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ------HHHHHHHHHHHHHhcCCCeEEEEe
Confidence                  223567899999999999999994

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.77  E-value=2e-09  Score=96.36  Aligned_cols=100  Identities=17%  Similarity=0.151  Sum_probs=68.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CC-cchhhhhhhhhhcc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YP-RTYDLLHADHLFST  144 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yP-rtyDllH~~~lfs~  144 (223)
                      -.+|||+|||.|.++..+++.   .|+.+.+++ ......+.+.+.|+...+.=.+..+..  +| .+||+|.|..+...
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~  145 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC  145 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred             CCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence            468999999999999999887   456666653 222244455566774322212223333  55 89999999765554


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEe
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ......++.++.+++|+|||||.++..
T Consensus       146 l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          146 LFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             BTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             ccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            444445678999999999999999765

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.77  E-value=1.4e-08  Score=85.32  Aligned_cols=104  Identities=12%  Similarity=0.103  Sum_probs=65.8

Q ss_pred             ccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCC--CCCCChhhHH----hhCccc---ccc-c-c-ccc
Q 027471           63 GMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPI--ESPDTLPIIY----ERGLFG---LYH-D-W-CES  125 (223)
Q Consensus        63 ~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~--~~~~~l~~i~----eRGLi~---~~~-d-w-ce~  125 (223)
                      .+++..+  .+|||+|||.|.++..|+++     .|+.+.+++.  .++..++.+.    +.|+..   ++. | . .+.
T Consensus        38 ~~~~~~~--~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  115 (275)
T 3bkx_A           38 AWQVKPG--EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDL  115 (275)
T ss_dssp             HHTCCTT--CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCC
T ss_pred             HcCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhcc
Confidence            3444443  58999999999999998765     3555666554  1223444443    334422   222 1 1 111


Q ss_pred             CCCCC-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          126 FNTYP-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       126 f~tyP-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      ++ ++ .+||+|+|.+++.+..+.   +.++..+.++++|||++++.+
T Consensus       116 ~~-~~~~~fD~v~~~~~l~~~~~~---~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          116 GP-IADQHFDRVVLAHSLWYFASA---NALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             GG-GTTCCCSEEEEESCGGGSSCH---HHHHHHHHHHTTTCSEEEEEE
T ss_pred             CC-CCCCCEEEEEEccchhhCCCH---HHHHHHHHHHhCCCCEEEEEE
Confidence            22 34 899999999999887654   355666677777799999974

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.77  E-value=2.5e-09  Score=87.53  Aligned_cols=130  Identities=16%  Similarity=0.140  Sum_probs=78.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---c-cccccccCCCCC-----cchhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---L-YHDWCESFNTYP-----RTYDLL  136 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~-~~dwce~f~tyP-----rtyDll  136 (223)
                      -.+|||+|||.|.++.+|++.     .|+.+.+.|.......+.+.+.|+..   + ..|..+.++.++     .+||+|
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v  144 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI  144 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence            358999999999999999875     35666665442222333344446533   2 223333333333     789999


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHH------------HHHHHHHHHH----hCCCeeEEeecCCCe
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE------------TIVEVEDLVK----SLHWDVRMIYTNDNQ  200 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~------------~~~~i~~i~~----~l~W~~~~~~~~~~e  200 (223)
                      .+...      ......++.++-|+|||||++++.|...            ....++.+.+    .-++.....  .-.+
T Consensus       145 ~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l--p~~d  216 (225)
T 3tr6_A          145 YIDAD------KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILI--PIGD  216 (225)
T ss_dssp             EECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE--CSTT
T ss_pred             EECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEE--EcCC
Confidence            86531      2234578999999999999999985421            1223444433    334554433  2346


Q ss_pred             eEEEEEec
Q 027471          201 GMLCVHKT  208 (223)
Q Consensus       201 ~~L~~~K~  208 (223)
                      .+++++|+
T Consensus       217 G~~~~~k~  224 (225)
T 3tr6_A          217 GLTLARKK  224 (225)
T ss_dssp             CEEEEEEC
T ss_pred             ccEEEEEC
Confidence            78888774

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.77  E-value=1.1e-09  Score=90.43  Aligned_cols=134  Identities=15%  Similarity=0.112  Sum_probs=80.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCCCC-----cchhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTYP-----RTYDLL  136 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyP-----rtyDll  136 (223)
                      -.+|||+|||.|.++.+|++.     .|+.+.+.|.......+.+...|+-.    +..|..+.++.++     .+||+|
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V  138 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  138 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence            468999999999999999873     46666665543222333333456632    2334334455555     699999


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHH-HHH-HHHHHHhCCCeeEEee-----cCCCeeEEEEEec
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAET-IVE-VEDLVKSLHWDVRMIY-----TNDNQGMLCVHKT  208 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~-~~~-i~~i~~~l~W~~~~~~-----~~~~e~~L~~~K~  208 (223)
                      .++...+++.+   ...++.++ |+|||||.+++.|.... ... ++.+.+.=.++.....     ....+.+.+++++
T Consensus       139 ~~d~~~~~~~~---~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~  213 (221)
T 3u81_A          139 FLDHWKDRYLP---DTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  213 (221)
T ss_dssp             EECSCGGGHHH---HHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred             EEcCCcccchH---HHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence            88755544432   12566677 99999999999865321 122 2222333345554322     1235678888765

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.75  E-value=4.4e-09  Score=90.60  Aligned_cols=116  Identities=12%  Similarity=0.071  Sum_probs=75.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCCCe--EEEEecCCCCCCChhhHHhh-Cc-------------------ccccccccccCCC
Q 027471           71 VRNVMDMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYER-GL-------------------FGLYHDWCESFNT  128 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~V--~vmnv~p~~~~~~l~~i~eR-GL-------------------i~~~~dwce~f~t  128 (223)
                      -..|||+|||.|.++.+|++++.  +.+.++|.    .++.+.++ ++                   ..-+.-.|..+..
T Consensus        69 ~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~----~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           69 GLRVFFPLCGKAIEMKWFADRGHTVVGVEISEI----GIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             SCEEEETTCTTCTHHHHHHHTTCEEEEECSCHH----HHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHH----HHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            45799999999999999999864  44444443    44444332 11                   0111222344444


Q ss_pred             CC----cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEE-ecc--------H---HHHHHHHHHHHhCCCeeE
Q 027471          129 YP----RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLIL-RDD--------A---ETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       129 yP----rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii-~D~--------~---~~~~~i~~i~~~l~W~~~  192 (223)
                      .|    .+||+|-+..+|.+.. ....+.++.|+.|+|||||.+++ +-.        .   -..+++..++.. .|++.
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~  222 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQ  222 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred             CCcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEE
Confidence            32    7899999888887664 33456899999999999999964 310        0   124677777776 47764

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.74  E-value=4.4e-09  Score=87.09  Aligned_cols=108  Identities=13%  Similarity=0.162  Sum_probs=71.8

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc-cc-ccccccccCCCC-Ccchhhhhhhhhhccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL-FG-LYHDWCESFNTY-PRTYDLLHADHLFSTI  145 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL-i~-~~~dwce~f~ty-PrtyDllH~~~lfs~~  145 (223)
                      -.+|||+|||.|.++..|++.+  |+.+.++|.    .++.+.++.- +. ...|+.+.++.- +.+||+|.|.      
T Consensus        49 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------  118 (226)
T 3m33_A           49 QTRVLEAGCGHGPDAARFGPQAARWAAYDFSPE----LLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------  118 (226)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHH----HHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHH----HHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence            3579999999999999999875  444554332    5666666521 11 334444455543 5899999886      


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCee
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~  191 (223)
                         -....+|.|+.|+|||||.++..........+.+.+....+..
T Consensus       119 ---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~  161 (226)
T 3m33_A          119 ---RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDI  161 (226)
T ss_dssp             ---SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEE
T ss_pred             ---CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeE
Confidence               1345889999999999999994432223345566666655554

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.74  E-value=3.2e-09  Score=84.73  Aligned_cols=129  Identities=15%  Similarity=0.172  Sum_probs=69.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-------------CeEEEEecCCCCCCChhhHHhhCccccccccccc-C-----CCCC-
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-------------KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCES-F-----NTYP-  130 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-------------~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~-f-----~tyP-  130 (223)
                      -.+|||+|||.|.++.+|+++             .|+.+.++|........++ .      ..|..+. +     ..++ 
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~-~------~~d~~~~~~~~~~~~~~~~   95 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL-C------PADVTDPRTSQRILEVLPG   95 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEE-C------SCCTTSHHHHHHHHHHSGG
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEE-E------eccCCCHHHHHHHHHhcCC
Confidence            368999999999999998764             3677777764321111111 0      1111000 0     0134 


Q ss_pred             cchhhhhhhhhhcccc----c----ccchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCe-eEEe-e----
Q 027471          131 RTYDLLHADHLFSTIK----K----RCSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWD-VRMI-Y----  195 (223)
Q Consensus       131 rtyDllH~~~lfs~~~----~----rC~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~-~~~~-~----  195 (223)
                      ++||+|-|+..++...    +    ......++.|+-|+|||||.+++.+... ....+...++.. +. +... .    
T Consensus        96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~-f~~v~~~~~~~~~  174 (196)
T 2nyu_A           96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEE-FQNVRIIKPEASR  174 (196)
T ss_dssp             GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHH-EEEEEEECCC---
T ss_pred             CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHH-hcceEEECCcccC
Confidence            6899998864333211    1    1112478999999999999999984321 223333333332 22 2211 1    


Q ss_pred             cCCCeeEEEEEe
Q 027471          196 TNDNQGMLCVHK  207 (223)
Q Consensus       196 ~~~~e~~L~~~K  207 (223)
                      ....|.++++..
T Consensus       175 ~~~~e~~~v~~g  186 (196)
T 2nyu_A          175 KESSEVYFLATQ  186 (196)
T ss_dssp             -----EEEEEEE
T ss_pred             ccCceEEEEeee
Confidence            234688888875

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.74  E-value=8e-09  Score=90.63  Aligned_cols=103  Identities=11%  Similarity=-0.031  Sum_probs=68.6

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcc-ccccccccc-C---CCCCcchh
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLF-GLYHDWCES-F---NTYPRTYD  134 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi-~~~~dwce~-f---~tyPrtyD  134 (223)
                      +.+++..  -.+|||+|||+|.++..|++++  |+.+.++|.    .++.+.++--- .+-.+|.+. +   ...+.+||
T Consensus        39 ~~l~l~~--g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~----ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD  112 (261)
T 3iv6_A           39 FLENIVP--GSTVAVIGASTRFLIEKALERGASVTVFDFSQR----MCDDLAEALADRCVTIDLLDITAEIPKELAGHFD  112 (261)
T ss_dssp             HTTTCCT--TCEEEEECTTCHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCS
T ss_pred             HhcCCCC--cCEEEEEeCcchHHHHHHHhcCCEEEEEECCHH----HHHHHHHHHHhccceeeeeecccccccccCCCcc
Confidence            3444433  4689999999999999998874  555665443    44444443211 122233221 1   12357999


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +|.|..++.++... ....++.++.|+| |||.++++-
T Consensus       113 ~Vv~~~~l~~~~~~-~~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          113 FVLNDRLINRFTTE-EARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             EEEEESCGGGSCHH-HHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             EEEEhhhhHhCCHH-HHHHHHHHHHHhC-cCcEEEEEe
Confidence            99999888876532 3568999999999 999999983

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.74  E-value=1.3e-09  Score=93.34  Aligned_cols=64  Identities=20%  Similarity=0.315  Sum_probs=47.3

Q ss_pred             CC-cchhhhhhhhhhcccccc-cchhHHHHhhhhcccCCcEEEEeccH----------------HHHHHHHHHHHhCCCe
Q 027471          129 YP-RTYDLLHADHLFSTIKKR-CSLKAVVAEVDRILRPDGNLILRDDA----------------ETIVEVEDLVKSLHWD  190 (223)
Q Consensus       129 yP-rtyDllH~~~lfs~~~~r-C~i~~vl~E~DRILRPgG~~ii~D~~----------------~~~~~i~~i~~~l~W~  190 (223)
                      +| .+||+|.|..+|.+.... .....+|.|+.|+|||||+|++.+..                -..+.+.++++.-.++
T Consensus       170 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~  249 (289)
T 2g72_A          170 PAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYK  249 (289)
T ss_dssp             SSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEE
T ss_pred             cCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCe
Confidence            44 789999999888774332 24568999999999999999997311                1246778887777776


Q ss_pred             eE
Q 027471          191 VR  192 (223)
Q Consensus       191 ~~  192 (223)
                      ..
T Consensus       250 ~~  251 (289)
T 2g72_A          250 VR  251 (289)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.74  E-value=4.3e-09  Score=95.29  Aligned_cols=101  Identities=15%  Similarity=0.181  Sum_probs=66.9

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhcc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFST  144 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~  144 (223)
                      .-.+|||+|||+|.++..|++.+   |+.+..+ .......+.+.+.|+...+.=.|..+..  +|..||+|.|..+...
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~~  141 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYF  141 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBTT
T ss_pred             CCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhhc
Confidence            34689999999999999998874   5555554 2222244455566764322111223333  4589999999654443


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEe
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ..+.-.++.++.+++|+|+|||.++++
T Consensus       142 l~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          142 LLRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             BTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             ccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            333334668999999999999999886

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.73  E-value=8.2e-09  Score=91.75  Aligned_cols=100  Identities=16%  Similarity=0.083  Sum_probs=59.3

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhh--HHhhCcccccccccc-cCCCCC-cchhhhhhhhhhc--
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPI--IYERGLFGLYHDWCE-SFNTYP-RTYDLLHADHLFS--  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~--i~eRGLi~~~~dwce-~f~tyP-rtyDllH~~~lfs--  143 (223)
                      ..+|||+|||.|+|+..|+++ .|..+.+....++..+..  +...|...+ .--+. .+-..| .+||+|.|+..++  
T Consensus        83 g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~D~~~l~~~~fD~V~sd~~~~~g  161 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLV-RLQSGVDVFFIPPERCDTLLCDIGESSP  161 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGE-EEECSCCTTTSCCCCCSEEEECCCCCCS
T ss_pred             CCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCe-EEEeccccccCCcCCCCEEEECCccccC
Confidence            468999999999999999987 477777622211111110  011122211 10112 222334 7999999986664  


Q ss_pred             cc-ccccchhHHHHhhhhcccCCcEEEEe
Q 027471          144 TI-KKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       144 ~~-~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ++ .+.-....+|.++.|+|||||.|++.
T Consensus       162 ~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          162 NPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            11 11110114789999999999999996

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.71  E-value=3.9e-09  Score=87.44  Aligned_cols=99  Identities=12%  Similarity=-0.019  Sum_probs=66.0

Q ss_pred             CceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC------CC--cchhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT------YP--RTYDLLHAD  139 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t------yP--rtyDllH~~  139 (223)
                      .-.+|||+|||+|.++..|+++  .|+.+.++|.    .++.+.++--..-+.--|..+..      |+  ..||+|.|.
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~----~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~  131 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKS----ALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR  131 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHH----HHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHH----HHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence            3457999999999999999876  4666666443    44444444211111111223322      22  348999999


Q ss_pred             hhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      .++++... -....+|.|+.|+|||||++++.+.
T Consensus       132 ~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~  164 (245)
T 3ggd_A          132 TGFHHIPV-EKRELLGQSLRILLGKQGAMYLIEL  164 (245)
T ss_dssp             SSSTTSCG-GGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             chhhcCCH-HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            88888763 2356999999999999999888743

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.71  E-value=1.9e-09  Score=97.02  Aligned_cols=130  Identities=14%  Similarity=0.088  Sum_probs=79.8

Q ss_pred             CceEEEeeCCchHHHHHHhh----CCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhcc
Q 027471           70 FVRNVMDMRAVYGGFAAALK----DLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFST  144 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~----~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~  144 (223)
                      .-.+|||+|||.|++++.+.    .-.|+.+.+.|.......+.+.+.|+ .-+.--|+....+| ++||+|.+..+   
T Consensus       122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~---  197 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAAL---  197 (298)
T ss_dssp             TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTT---
T ss_pred             CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCC---
Confidence            34689999999998876543    22567777766544334444555587 32222234444466 89999987543   


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEeccHHHH----HHHH-HHHHhCCCeeEEee--cC-CCeeEEEEEec
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRDDAETI----VEVE-DLVKSLHWDVRMIY--TN-DNQGMLCVHKT  208 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~----~~i~-~i~~~l~W~~~~~~--~~-~~e~~L~~~K~  208 (223)
                      .   -..+.++.|+-|+|||||.+++++....-    ..+. ...+  .|+.....  .+ -...+.+++|.
T Consensus       198 ~---~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~p~~~v~N~vv~a~k~  264 (298)
T 3fpf_A          198 A---EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVLPSGKVNNTSVLVFKC  264 (298)
T ss_dssp             C---SCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEECCCTTCCCEEEEEEEC
T ss_pred             c---cCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEECCCCCcCcEEEEEEcc
Confidence            1   23458999999999999999999643221    1111 1122  56654332  22 25668888774

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.71  E-value=7.5e-09  Score=90.95  Aligned_cols=100  Identities=13%  Similarity=0.121  Sum_probs=58.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCC-ChhhH-HhhCc-ccccccccccCCCC-Ccchhhhhhhhhhccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPD-TLPII-YERGL-FGLYHDWCESFNTY-PRTYDLLHADHLFSTI  145 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~-~l~~i-~eRGL-i~~~~dwce~f~ty-PrtyDllH~~~lfs~~  145 (223)
                      ..+|||+|||+|+|+..|+++ .|+.+.++|....- ..+.. ...|. +-.+.+ +..+..+ +.+||+|-|+..+...
T Consensus        83 g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~-~~D~~~l~~~~fD~Vvsd~~~~~~  161 (276)
T 2wa2_A           83 KGTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKS-KVDVTKMEPFQADTVLCDIGESNP  161 (276)
T ss_dssp             CEEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEEC-SCCGGGCCCCCCSEEEECCCCCCS
T ss_pred             CCEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEec-cCcHhhCCCCCcCEEEECCCcCCC
Confidence            468999999999999999886 68888888831100 00000 00111 111200 1122224 4899999987542110


Q ss_pred             c---cccchhHHHHhhhhcccCCc--EEEEe
Q 027471          146 K---KRCSLKAVVAEVDRILRPDG--NLILR  171 (223)
Q Consensus       146 ~---~rC~i~~vl~E~DRILRPgG--~~ii~  171 (223)
                      .   +.-....+|.++.|+|||||  .|++.
T Consensus       162 ~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~  192 (276)
T 2wa2_A          162 TAAVEASRTLTVLNVISRWLEYNQGCGFCVK  192 (276)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred             chhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence            0   10000137899999999999  99886

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.70  E-value=4e-09  Score=91.37  Aligned_cols=116  Identities=12%  Similarity=0.081  Sum_probs=76.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCcccccccccccCCCC--Ccchhhhhhhhhhccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY--PRTYDLLHADHLFSTI  145 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~ty--PrtyDllH~~~lfs~~  145 (223)
                      -.+|||+|||+|+|+..+++.+   |+.+.++|..-....+-+...|+-..+.-.|.....+  +.+||+|.++..    
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p----  201 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV----  201 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC----
T ss_pred             CCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc----
Confidence            3589999999999999887652   6666555442221222233346643222222333333  489999988633    


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEeccH-------HHHHHHHHHHHhCCCeeEE
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILRDDA-------ETIVEVEDLVKSLHWDVRM  193 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~~-------~~~~~i~~i~~~l~W~~~~  193 (223)
                         +....++.++-|+|||||.+++.+..       +....+.+.++...|++..
T Consensus       202 ---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          202 ---VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             ---SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             ---hhHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence               23357889999999999999996443       3467888889999998765

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.69  E-value=1.5e-09  Score=94.17  Aligned_cols=101  Identities=18%  Similarity=0.232  Sum_probs=67.9

Q ss_pred             ccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc-ccccccccCCCCC---cch
Q 027471           63 GMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYP---RTY  133 (223)
Q Consensus        63 ~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~tyP---rty  133 (223)
                      .|+|++|  -+|||+|||.|.|+.+|++.     .|..+.++|.......+.+.+++-+- +..|-+. ...||   .++
T Consensus        72 ~l~ikpG--~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~-p~~~~~~~~~v  148 (233)
T 4df3_A           72 ELPVKEG--DRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARF-PEKYRHLVEGV  148 (233)
T ss_dssp             CCCCCTT--CEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTC-GGGGTTTCCCE
T ss_pred             hcCCCCC--CEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccC-ccccccccceE
Confidence            3446665  48999999999999999864     48888887765443444445555433 4444322 22233   788


Q ss_pred             hhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       134 DllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      |++.+..  .+..   ..+.++.|+.|+|||||.+++.
T Consensus       149 DvVf~d~--~~~~---~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          149 DGLYADV--AQPE---QAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEEECC--CCTT---HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEec--cCCh---hHHHHHHHHHHhccCCCEEEEE
Confidence            9877642  2111   2347899999999999999986

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.68  E-value=2.7e-08  Score=84.31  Aligned_cols=111  Identities=13%  Similarity=0.119  Sum_probs=70.6

Q ss_pred             eEEEeeCCchHHHHHHhhCC--------CeEEEEecCCCCCCChhhHHhhCccc-cccccccc--CCCCC-cchhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDL--------KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCES--FNTYP-RTYDLLHAD  139 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~--------~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~--f~tyP-rtyDllH~~  139 (223)
                      .+|||+|||+|..++.|++.        .|+.+.++|.......+  .... +- +..|..+.  ++..+ .+||+|+++
T Consensus        83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~--~~~~-v~~~~gD~~~~~~l~~~~~~~fD~I~~d  159 (236)
T 2bm8_A           83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--DMEN-ITLHQGDCSDLTTFEHLREMAHPLIFID  159 (236)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--GCTT-EEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred             CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc--cCCc-eEEEECcchhHHHHHhhccCCCCEEEEC
Confidence            58999999999999998653        47777777765432211  0111 22 22332221  23233 379999976


Q ss_pred             hhhcccccccchhHHHHhhhh-cccCCcEEEEeccHHH-----HHHHHHHHHhC--CCee
Q 027471          140 HLFSTIKKRCSLKAVVAEVDR-ILRPDGNLILRDDAET-----IVEVEDLVKSL--HWDV  191 (223)
Q Consensus       140 ~lfs~~~~rC~i~~vl~E~DR-ILRPgG~~ii~D~~~~-----~~~i~~i~~~l--~W~~  191 (223)
                      ..  +    .....+|.|+.| +|||||++++.|....     ...+.++++..  .++.
T Consensus       160 ~~--~----~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~  213 (236)
T 2bm8_A          160 NA--H----ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM  213 (236)
T ss_dssp             SS--C----SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred             Cc--h----HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence            43  1    145689999998 9999999999874221     23677777776  4554

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.66  E-value=5.4e-09  Score=88.24  Aligned_cols=99  Identities=12%  Similarity=0.075  Sum_probs=55.0

Q ss_pred             ceEEEeeCCchHHHHHHhh--CCC--eEEEEecCCCC----CCChhhHHhhCcccccccccccCCCCC----cchhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALK--DLK--VWVMNVVPIES----PDTLPIIYERGLFGLYHDWCESFNTYP----RTYDLLHA  138 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~--~~~--V~vmnv~p~~~----~~~l~~i~eRGLi~~~~dwce~f~tyP----rtyDllH~  138 (223)
                      -..|||+|||.|.++.+|+  ..+  |+.+.++|...    ....+.+.++|+..+-. -+.....+|    ..+|.+++
T Consensus        25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~-~~~d~~~l~~~~~d~v~~i~~  103 (225)
T 3p2e_A           25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVF-VIAAAESLPFELKNIADSISI  103 (225)
T ss_dssp             SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEE-ECCBTTBCCGGGTTCEEEEEE
T ss_pred             CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEE-EEcCHHHhhhhccCeEEEEEE
Confidence            4689999999999999998  444  45555553321    10122234556643111 122333334    33444443


Q ss_pred             hhhhcc--cccccchhHHHHhhhhcccCCcEEEE
Q 027471          139 DHLFST--IKKRCSLKAVVAEVDRILRPDGNLIL  170 (223)
Q Consensus       139 ~~lfs~--~~~rC~i~~vl~E~DRILRPgG~~ii  170 (223)
                      ...+..  ...+-....+|.|+.|+|||||.+++
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            211110  00111234789999999999999999

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.66  E-value=1e-07  Score=76.17  Aligned_cols=126  Identities=13%  Similarity=0.088  Sum_probs=81.2

Q ss_pred             eEEEeeCCchHHHHHHhhCCC-eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhcccccc-
Q 027471           72 RNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKR-  148 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~-V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~~r-  148 (223)
                      .+|||+|||+|.++.+|+++. |+.+.++|.    .++.  ...+--...|   .+..++ .+||+|-|+..|....+. 
T Consensus        25 ~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~----~~~~--~~~~~~~~~d---~~~~~~~~~fD~i~~n~~~~~~~~~~   95 (170)
T 3q87_B           25 KIVLDLGTSTGVITEQLRKRNTVVSTDLNIR----ALES--HRGGNLVRAD---LLCSINQESVDVVVFNPPYVPDTDDP   95 (170)
T ss_dssp             CEEEEETCTTCHHHHHHTTTSEEEEEESCHH----HHHT--CSSSCEEECS---TTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred             CeEEEeccCccHHHHHHHhcCcEEEEECCHH----HHhc--ccCCeEEECC---hhhhcccCCCCEEEECCCCccCCccc
Confidence            389999999999999999986 334444332    2222  1121112233   223345 899999998766643221 


Q ss_pred             -----cchhHHHHhhhhcccCCcEEEEeccH-HHHHHHHHHHHhCCCeeEEee--cCCCeeEEEEEe
Q 027471          149 -----CSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVRMIY--TNDNQGMLCVHK  207 (223)
Q Consensus       149 -----C~i~~vl~E~DRILRPgG~~ii~D~~-~~~~~i~~i~~~l~W~~~~~~--~~~~e~~L~~~K  207 (223)
                           .....++.++-|.| |||.+++.... .....+.++++...|+.....  ....|++++.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~~  161 (170)
T 3q87_B           96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGETVYIIKG  161 (170)
T ss_dssp             TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEEE
T ss_pred             cccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEEE
Confidence                 12236788888888 99999997543 456788888888889875432  344566666543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.66  E-value=5.5e-09  Score=85.20  Aligned_cols=95  Identities=16%  Similarity=0.083  Sum_probs=62.7

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---cc-ccccccCCCCCcchhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---LY-HDWCESFNTYPRTYDLLHADHL  141 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~-~dwce~f~tyPrtyDllH~~~l  141 (223)
                      -.+|||+|||.|.++.+|++.     .|+.+.+.|.......+.+...|+..   ++ .|..+.++..+. ||+|.++. 
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~-  134 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC-  134 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET-
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC-
Confidence            458999999999999999865     45666654442222223333446532   22 233333344567 99998762 


Q ss_pred             hcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                           .......++.++-|+|||||.+++.+
T Consensus       135 -----~~~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          135 -----DVFNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             -----TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             -----ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence                 12345689999999999999999965

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.66  E-value=1.3e-08  Score=87.86  Aligned_cols=133  Identities=14%  Similarity=0.169  Sum_probs=75.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh-CcccccccccccC--CCCCcchhhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESF--NTYPRTYDLLHADHLF  142 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f--~tyPrtyDllH~~~lf  142 (223)
                      -.+|||+|||+|+++..|++.     .|+.+.++|....+.++.+.+| .+..+..|-....  ...+.+||+|.++..+
T Consensus        77 g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~  156 (232)
T 3id6_C           77 GTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ  156 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC
T ss_pred             CCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCCC
Confidence            468999999999999888764     4777887665321123333343 2222344422211  1124789999887332


Q ss_pred             cccccccchhHHHH-hhhhcccCCcEEEEecc----------HHHHHHHHHHHHhCCCeeEE-eec---CCCeeEEEEEe
Q 027471          143 STIKKRCSLKAVVA-EVDRILRPDGNLILRDD----------AETIVEVEDLVKSLHWDVRM-IYT---NDNQGMLCVHK  207 (223)
Q Consensus       143 s~~~~rC~i~~vl~-E~DRILRPgG~~ii~D~----------~~~~~~i~~i~~~l~W~~~~-~~~---~~~e~~L~~~K  207 (223)
                            +....++. .+.|+|||||.++++-.          .++...+...++.-..+... .+-   +.+.-+++++|
T Consensus       157 ------~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~  230 (232)
T 3id6_C          157 ------PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKY  230 (232)
T ss_dssp             ------TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEE
T ss_pred             ------hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEEe
Confidence                  22234444 56679999999998721          11222333344443444332 121   34678888888


Q ss_pred             cc
Q 027471          208 TY  209 (223)
Q Consensus       208 ~~  209 (223)
                      ++
T Consensus       231 ~~  232 (232)
T 3id6_C          231 KG  232 (232)
T ss_dssp             C-
T ss_pred             CC
Confidence            63

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.65  E-value=1.9e-08  Score=84.59  Aligned_cols=132  Identities=15%  Similarity=0.140  Sum_probs=82.9

Q ss_pred             eEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcc-c----ccccccccCCCC-Ccchhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLF-G----LYHDWCESFNTY-PRTYDLLHADH  140 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi-~----~~~dwce~f~ty-PrtyDllH~~~  140 (223)
                      .+|||+|||.|.++.+|++.     .|+.+.+.|.......+.+.+.|+- .    ...|..+.++.+ +.+||+|.++.
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~  137 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV  137 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence            38999999999999888752     4666666544332233444445654 2    222323344456 48999997763


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEeccH------------HHHHHHHHHHHhCCCeeE--EeecCCCeeEEEEE
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA------------ETIVEVEDLVKSLHWDVR--MIYTNDNQGMLCVH  206 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~------------~~~~~i~~i~~~l~W~~~--~~~~~~~e~~L~~~  206 (223)
                      ..      -....++.++-|+|||||.+++.|..            .....+.++.+.++..-.  ...-.-.+.+++++
T Consensus       138 ~~------~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~~~~  211 (221)
T 3dr5_A          138 SP------MDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTVVT  211 (221)
T ss_dssp             CT------TTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTCEEEEE
T ss_pred             cH------HHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccchHHHHH
Confidence            21      22356899999999999999997432            123355666666666532  11123467899999


Q ss_pred             ecc
Q 027471          207 KTY  209 (223)
Q Consensus       207 K~~  209 (223)
                      |.+
T Consensus       212 ~~~  214 (221)
T 3dr5_A          212 KAL  214 (221)
T ss_dssp             ECC
T ss_pred             HHH
Confidence            875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.65  E-value=2e-08  Score=91.54  Aligned_cols=114  Identities=11%  Similarity=0.110  Sum_probs=71.8

Q ss_pred             eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCC-cchhhhhhhhhhc
Q 027471           72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYP-RTYDLLHADHLFS  143 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyP-rtyDllH~~~lfs  143 (223)
                      .+|||+|||+|.++..|+++    .|+.+.+++.......+.+.+.|+..   +-..++..+..++ .+||+|-|...|+
T Consensus       224 ~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~nppfh  303 (375)
T 4dcm_A          224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFH  303 (375)
T ss_dssp             SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECCCC-
T ss_pred             CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECCCcc
Confidence            68999999999999999776    46666665543332333344456432   2111223444456 7999999988886


Q ss_pred             ccc--cccchhHHHHhhhhcccCCcEEEEecc--HHHHHHHHHHHH
Q 027471          144 TIK--KRCSLKAVVAEVDRILRPDGNLILRDD--AETIVEVEDLVK  185 (223)
Q Consensus       144 ~~~--~rC~i~~vl~E~DRILRPgG~~ii~D~--~~~~~~i~~i~~  185 (223)
                      ...  .+-....++.++-|+|||||.+++..+  ......+++++.
T Consensus       304 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg  349 (375)
T 4dcm_A          304 QQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG  349 (375)
T ss_dssp             ------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred             cCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence            432  222334789999999999999999643  224445555444

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.65  E-value=2.7e-08  Score=84.59  Aligned_cols=112  Identities=15%  Similarity=0.115  Sum_probs=68.0

Q ss_pred             CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHh----------hCccc--ccc-cccccCCC-CC-
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYE----------RGLFG--LYH-DWCESFNT-YP-  130 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~e----------RGLi~--~~~-dwce~f~t-yP-  130 (223)
                      .-..|||+|||+|.++..|++.    .|+.+.+++.    .++.+.+          .|+..  +++ |..+.++. ++ 
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~----~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~  121 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVK----VSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYK  121 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHH----HHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCT
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHH----HHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCC
Confidence            3467999999999999999865    4666666543    2222211          23422  222 22112332 44 


Q ss_pred             cchhhhhhhhhhc-------ccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhC
Q 027471          131 RTYDLLHADHLFS-------TIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSL  187 (223)
Q Consensus       131 rtyDllH~~~lfs-------~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l  187 (223)
                      .+||.|.+.  |.       +.+.|...+.+|.|+.|+|||||.|++. |.......+...+...
T Consensus       122 ~~~D~v~~~--~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~  184 (235)
T 3ckk_A          122 GQLTKMFFL--FPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEH  184 (235)
T ss_dssp             TCEEEEEEE--SCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred             cCeeEEEEe--CCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence            899998653  21       1223333468999999999999999985 6666666665555444

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.63  E-value=1.9e-08  Score=82.67  Aligned_cols=139  Identities=17%  Similarity=0.285  Sum_probs=75.5

Q ss_pred             hhccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh-Cccccccccccc--CCCCCcc
Q 027471           61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER-GLFGLYHDWCES--FNTYPRT  132 (223)
Q Consensus        61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~--f~tyPrt  132 (223)
                      ++.+.+..+  .+|||+|||.|.++..|+++     .|+.+.++|.......+.+.++ ++--...|..+.  +...+.+
T Consensus        66 l~~~~~~~~--~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (227)
T 1g8a_A           66 LKNFPIKPG--KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCCCCCTT--CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCC
T ss_pred             HHhcCCCCC--CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCC
Confidence            333444443  48999999999999988754     4666666553111111111111 221122332221  1223578


Q ss_pred             hhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH---------H-H-HHHHHHHHHhCCCeeEEe-ec---C
Q 027471          133 YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA---------E-T-IVEVEDLVKSLHWDVRMI-YT---N  197 (223)
Q Consensus       133 yDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~---------~-~-~~~i~~i~~~l~W~~~~~-~~---~  197 (223)
                      ||+|.++..     .......++.++.|+|||||.+++.-..         . . ...++.+ ..- ++.... +-   +
T Consensus       144 ~D~v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~~~~  216 (227)
T 1g8a_A          144 VDVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLEPYE  216 (227)
T ss_dssp             EEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECTTTS
T ss_pred             ceEEEECCC-----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccCccc
Confidence            999887632     1111235599999999999999996111         1 1 2456666 333 765422 21   2


Q ss_pred             CCeeEEEEEec
Q 027471          198 DNQGMLCVHKT  208 (223)
Q Consensus       198 ~~e~~L~~~K~  208 (223)
                      .+.-+++++|+
T Consensus       217 ~~~~~~~~~~~  227 (227)
T 1g8a_A          217 KDHALFVVRKT  227 (227)
T ss_dssp             SSEEEEEEECC
T ss_pred             CCCEEEEEEeC
Confidence            33556777763

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.63  E-value=6.6e-09  Score=92.34  Aligned_cols=131  Identities=12%  Similarity=0.109  Sum_probs=81.3

Q ss_pred             eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcccc-
Q 027471           72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIK-  146 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~-  146 (223)
                      .+|||+|||+|.++..|.++    .|+.+.+++..-....+.+.+.|+-..+. ++..++..+.+||+|.|...|+... 
T Consensus       198 ~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~-~~d~~~~~~~~fD~Iv~~~~~~~g~~  276 (343)
T 2pjd_A          198 GKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVF-ASNVFSEVKGRFDMIISNPPFHDGMQ  276 (343)
T ss_dssp             SBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEE-ECSTTTTCCSCEEEEEECCCCCSSSH
T ss_pred             CeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEE-EccccccccCCeeEEEECCCcccCcc
Confidence            47999999999999998754    47777765543222222333345532221 2223333358999999988887432 


Q ss_pred             -cccchhHHHHhhhhcccCCcEEEEeccHH--HHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471          147 -KRCSLKAVVAEVDRILRPDGNLILRDDAE--TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK  207 (223)
Q Consensus       147 -~rC~i~~vl~E~DRILRPgG~~ii~D~~~--~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K  207 (223)
                       +......++.|+.|+|||||.+++.....  .-..++++...    +.....+.+=+++.++|
T Consensus       277 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~~----~~~~~~~~gf~v~~~~k  336 (343)
T 2pjd_A          277 TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGF----HEVIAQTGRFKVYRAIM  336 (343)
T ss_dssp             HHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHSC----CEEEEECSSEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcCc----eEEEeeCCCEEEEEEEe
Confidence             12234689999999999999999974432  33444444442    22222345666777766

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.63  E-value=1.8e-09  Score=85.31  Aligned_cols=100  Identities=14%  Similarity=0.116  Sum_probs=62.3

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCccc----ccccccccCCCCCcchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      -.+|||+|||.|.++.+|++++   |+.+.+.+.......+.+...|+..    ...|+.+.++..+..||+|.++..|.
T Consensus        32 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~  111 (177)
T 2esr_A           32 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYA  111 (177)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSH
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCCC
Confidence            3589999999999999888764   4555544332222222333345432    23333333344557899999876553


Q ss_pred             ccccccchhHHHHhhh--hcccCCcEEEEeccH
Q 027471          144 TIKKRCSLKAVVAEVD--RILRPDGNLILRDDA  174 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~D--RILRPgG~~ii~D~~  174 (223)
                      .    ...+.++.++.  |+|+|||.+++....
T Consensus       112 ~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          112 K----ETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             H----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             c----chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            2    12345666665  999999999998544

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.61  E-value=4.4e-09  Score=84.44  Aligned_cols=125  Identities=13%  Similarity=0.048  Sum_probs=74.3

Q ss_pred             hhHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCc--cccc
Q 027471           45 FTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGL--FGLY  119 (223)
Q Consensus        45 f~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGL--i~~~  119 (223)
                      +...++...+.+-+ ++....  ...-.+|||+|||+|.++.++++++   |+.+.+.|.......+.+.+.|+  +-++
T Consensus        22 ~rp~~~~~~~~l~~-~l~~~~--~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~   98 (189)
T 3p9n_A           22 TRPTTDRVRESLFN-IVTARR--DLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLR   98 (189)
T ss_dssp             C---CHHHHHHHHH-HHHHHS--CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEE
T ss_pred             CccCcHHHHHHHHH-HHHhcc--CCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence            33444555555544 443321  1224579999999999999776653   66666655433222333334465  2222


Q ss_pred             c-cccccCCCC-CcchhhhhhhhhhcccccccchhHHHHhhhh--cccCCcEEEEeccH
Q 027471          120 H-DWCESFNTY-PRTYDLLHADHLFSTIKKRCSLKAVVAEVDR--ILRPDGNLILRDDA  174 (223)
Q Consensus       120 ~-dwce~f~ty-PrtyDllH~~~lfs~~~~rC~i~~vl~E~DR--ILRPgG~~ii~D~~  174 (223)
                      + |..+....+ +.+||+|-++..|....  ...+.++.++.|  +|+|||.+++....
T Consensus        99 ~~d~~~~~~~~~~~~fD~i~~~~p~~~~~--~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A           99 RGAVAAVVAAGTTSPVDLVLADPPYNVDS--ADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             ESCHHHHHHHCCSSCCSEEEECCCTTSCH--HHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             EccHHHHHhhccCCCccEEEECCCCCcch--hhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            2 222222224 48999999987666532  235689999998  99999999997543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.61  E-value=2.4e-08  Score=89.17  Aligned_cols=97  Identities=15%  Similarity=0.117  Sum_probs=62.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCcc---cccccccccCCCCC-cchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLF---GLYHDWCESFNTYP-RTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi---~~~~dwce~f~tyP-rtyDllH~~~lfs  143 (223)
                      -.+|||+|||+|.++..+++.+   |+.+.+++ ......+.+.+.|+-   -+++.-.+.+ .+| .+||+|-|..+..
T Consensus        65 ~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~~~  142 (340)
T 2fyt_A           65 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV-HLPVEKVDVIISEWMGY  142 (340)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSCSCEEEEEECCCBT
T ss_pred             CCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh-cCCCCcEEEEEEcCchh
Confidence            4589999999999999988764   55566543 222233334445652   2333212222 255 8999999875322


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEE
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLI  169 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~i  169 (223)
                      ...+.-.++.+|.++.|+|||||.++
T Consensus       143 ~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          143 FLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            22222335679999999999999998

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.59  E-value=1.8e-08  Score=84.10  Aligned_cols=107  Identities=13%  Similarity=0.139  Sum_probs=69.3

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---C--eEEEEecCCCCCCChhhHHhhCccc----ccccccccCCCCC-cchhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---K--VWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTYP-RTYDLLHADH  140 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~--V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyP-rtyDllH~~~  140 (223)
                      -.+|||+|||.|.++.+|++.   +  |+.+.+.|.......+.+.+.|+..    ...|..+   .++ .+||+|-++ 
T Consensus        94 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~D~v~~~-  169 (255)
T 3mb5_A           94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE---GIEEENVDHVILD-  169 (255)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG---CCCCCSEEEEEEC-
T ss_pred             CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh---ccCCCCcCEEEEC-
Confidence            457999999999999998766   3  4455443332111222333347644    2333332   255 789998774 


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEecc-HHHHHHHHHHHHhCC
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLH  188 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~-~~~~~~i~~i~~~l~  188 (223)
                             -.....++.++.|+|||||.+++..+ .+...++.+.++...
T Consensus       170 -------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g  211 (255)
T 3mb5_A          170 -------LPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK  211 (255)
T ss_dssp             -------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred             -------CCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence                   22235789999999999999998754 445666666666665

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.58  E-value=1.6e-08  Score=89.62  Aligned_cols=98  Identities=13%  Similarity=0.107  Sum_probs=64.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCC-cchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYP-RTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyP-rtyDllH~~~lfs  143 (223)
                      -.+|||+|||.|.++..+++.+   |+.+..++ ......+.+.+.|+-.   +++.-.+.++ +| ..||+|.|..+..
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~~  116 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMGY  116 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCBT
T ss_pred             CCEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCchh
Confidence            3589999999999999888764   55565542 1112333444557633   3332122222 45 8999999976544


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEE
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLIL  170 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii  170 (223)
                      ...+.-.++.++.+++|+|+|||.++.
T Consensus       117 ~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          117 FLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            444444567899999999999999984

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.58  E-value=6.9e-09  Score=86.09  Aligned_cols=97  Identities=15%  Similarity=0.242  Sum_probs=59.0

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh-Cccccccccccc--CCCCCcchhhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER-GLFGLYHDWCES--FNTYPRTYDLLHADHLF  142 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~--f~tyPrtyDllH~~~lf  142 (223)
                      -.+|||+|||+|.++..|+++     .|+.+.++|......++.+.++ ++--...|..+.  ++..+.+||+|.|+.. 
T Consensus        78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~-  156 (233)
T 2ipx_A           78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA-  156 (233)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC-
T ss_pred             CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC-
Confidence            458999999999999998764     4666666543212233333332 222123332221  2223478999998532 


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                        ..+  ....++.++-|+|||||.++++-
T Consensus       157 --~~~--~~~~~~~~~~~~LkpgG~l~i~~  182 (233)
T 2ipx_A          157 --QPD--QTRIVALNAHTFLRNGGHFVISI  182 (233)
T ss_dssp             --CTT--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --Ccc--HHHHHHHHHHHHcCCCeEEEEEE
Confidence              111  11355778999999999999973

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.58  E-value=1.3e-08  Score=88.38  Aligned_cols=101  Identities=10%  Similarity=0.099  Sum_probs=67.9

Q ss_pred             CCceEEEeeCCch---HHHHHHhhC----CCeEEEEecCCCCCCChhhHHhh----Cccccc-cccccc-----C----C
Q 027471           69 SFVRNVMDMRAVY---GGFAAALKD----LKVWVMNVVPIESPDTLPIIYER----GLFGLY-HDWCES-----F----N  127 (223)
Q Consensus        69 ~~iRnvLDmgaG~---GgFAA~L~~----~~V~vmnv~p~~~~~~l~~i~eR----GLi~~~-~dwce~-----f----~  127 (223)
                      ..++.|||+|||+   |.++..+..    ..|+.+.++|.    .++.+.++    +-+..+ .|..+.     .    .
T Consensus        76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~----~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~  151 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPM----VLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRR  151 (274)
T ss_dssp             TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHH----HHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHH
T ss_pred             cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChH----HHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhc
Confidence            3578999999999   988766543    35777777654    33333222    222222 221110     0    1


Q ss_pred             CCC-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          128 TYP-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       128 tyP-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      ++| .+||++-+..+|+++.+. ....+|.|+-|+|||||+|++++..
T Consensus       152 ~~d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          152 MIDFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             HCCTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             cCCCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEec
Confidence            355 589999999999988764 5679999999999999999998543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.57  E-value=2.9e-08  Score=88.61  Aligned_cols=99  Identities=10%  Similarity=0.137  Sum_probs=65.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFSTI  145 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~~  145 (223)
                      -.+|||+|||.|.++..+++.+   |+.+..++ ......+.+.+.|+..-+.=.+..+..  .|..||+|-|..++.++
T Consensus        51 ~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~~  129 (348)
T 2y1w_A           51 DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYML  129 (348)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBTTB
T ss_pred             cCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchhcC
Confidence            4589999999999999887764   55555543 221133333444663211111233333  45789999998777766


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEe
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      .+. .+...+.++.|+|+|||.+++.
T Consensus       130 ~~~-~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          130 FNE-RMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             TTT-SHHHHHHHGGGGEEEEEEEESC
T ss_pred             ChH-HHHHHHHHHHhhcCCCeEEEEe
Confidence            532 3457788999999999999965

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.56  E-value=6.3e-08  Score=82.86  Aligned_cols=118  Identities=10%  Similarity=0.084  Sum_probs=72.6

Q ss_pred             CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHh---hCcc---cccccccccCCC---------CC
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYE---RGLF---GLYHDWCESFNT---------YP  130 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~e---RGLi---~~~~dwce~f~t---------yP  130 (223)
                      .-.+|||+|||.|.++..|+++    .|+.+.+.|.......+.+..   .|+-   -+++   ..+..         ++
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~---~D~~~~~~~~~~~~~~  112 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLE---ADVTLRAKARVEAGLP  112 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEE---CCTTCCHHHHHHTTCC
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEe---CCHHHHhhhhhhhccC
Confidence            3468999999999999888765    355555544322111111111   3442   2333   23332         33


Q ss_pred             -cchhhhhhhhhhccc---------------ccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCee
Q 027471          131 -RTYDLLHADHLFSTI---------------KKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       131 -rtyDllH~~~lfs~~---------------~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~  191 (223)
                       .+||+|-|.--|...               ...+.++.++.++-|+|||||.+++--..+....+...++.- +..
T Consensus       113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~  188 (260)
T 2ozv_A          113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG  188 (260)
T ss_dssp             TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred             CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence             789999987333221               234567899999999999999999876666666666666653 653

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.56  E-value=2.1e-08  Score=82.13  Aligned_cols=130  Identities=18%  Similarity=0.141  Sum_probs=76.7

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---cc-ccccccCCCCC-----cchhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---LY-HDWCESFNTYP-----RTYDLL  136 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~-~dwce~f~tyP-----rtyDll  136 (223)
                      -.+|||+|||.|.++.+|++.     .|+++.+.|.......+.+.+.|+..   ++ .|..+.++..+     .+||+|
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v  149 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  149 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence            468999999999999999874     46666665442222233333446522   22 22222222222     689998


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH------------HHHHHHHHHH----HhCCCeeEEeecCCCe
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA------------ETIVEVEDLV----KSLHWDVRMIYTNDNQ  200 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~------------~~~~~i~~i~----~~l~W~~~~~~~~~~e  200 (223)
                      .++..      ......++.++-|+|||||.+++.+..            +....++++.    +.=+++.....  -.+
T Consensus       150 ~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp--~~d  221 (229)
T 2avd_A          150 VVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLP--LGD  221 (229)
T ss_dssp             EECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEEC--STT
T ss_pred             EECCC------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEe--cCC
Confidence            88622      233457899999999999999996421            1223334433    33344443332  246


Q ss_pred             eEEEEEec
Q 027471          201 GMLCVHKT  208 (223)
Q Consensus       201 ~~L~~~K~  208 (223)
                      .+++++|.
T Consensus       222 Gl~~~~k~  229 (229)
T 2avd_A          222 GLTLAFKI  229 (229)
T ss_dssp             CEEEEEEC
T ss_pred             ceEEEEEC
Confidence            78888873

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.55  E-value=7.7e-10  Score=91.70  Aligned_cols=97  Identities=15%  Similarity=0.133  Sum_probs=64.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcc---cccc-cccccCCCCCcchhhhhhhhhhcc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLF---GLYH-DWCESFNTYPRTYDLLHADHLFST  144 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi---~~~~-dwce~f~tyPrtyDllH~~~lfs~  144 (223)
                      -.+|||+|||.|+++..|++.+  |+.+.++|.......+.+...|+.   -+++ |.. .++ -+.+||+|.++..|++
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~D~v~~~~~~~~  156 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFL-LLA-SFLKADVVFLSPPWGG  156 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH-HHG-GGCCCSEEEECCCCSS
T ss_pred             CCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChH-Hhc-ccCCCCEEEECCCcCC
Confidence            4589999999999999998875  555555544322233334444652   2222 221 222 2389999999988876


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEec
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      ....   ...+.|+.|+|+|||.+++..
T Consensus       157 ~~~~---~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          157 PDYA---TAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             GGGG---GSSSBCTTTSCSSCHHHHHHH
T ss_pred             cchh---hhHHHHHHhhcCCcceeHHHH
Confidence            5543   246779999999999988764

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.55  E-value=1e-08  Score=82.98  Aligned_cols=96  Identities=15%  Similarity=0.112  Sum_probs=61.7

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHh----hCccc--ccccccccCCCC--Cc
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYE----RGLFG--LYHDWCESFNTY--PR  131 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~e----RGLi~--~~~dwce~f~ty--Pr  131 (223)
                      +.+.+.  .-.+|||+|||.|.+++.|.+.+  |+.+.+.|.    .++.+.+    .|+..  +++.  ..+...  +.
T Consensus        71 ~~l~~~--~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~----~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~  142 (210)
T 3lbf_A           71 ELLELT--PQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKG----LQWQARRRLKNLDLHNVSTRHG--DGWQGWQARA  142 (210)
T ss_dssp             HHTTCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHH----HHHHHHHHHHHTTCCSEEEEES--CGGGCCGGGC
T ss_pred             HhcCCC--CCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHH----HHHHHHHHHHHcCCCceEEEEC--CcccCCccCC
Confidence            344443  34689999999999999998764  555555443    3333333    35532  2221  122222  37


Q ss_pred             chhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          132 TYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       132 tyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      +||+|.+...+.+..+         ++-|+|||||.+++.-..
T Consensus       143 ~~D~i~~~~~~~~~~~---------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          143 PFDAIIVTAAPPEIPT---------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CEEEEEESSBCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred             CccEEEEccchhhhhH---------HHHHhcccCcEEEEEEcC
Confidence            9999999866655443         678999999999997543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.55  E-value=3.3e-08  Score=81.13  Aligned_cols=97  Identities=12%  Similarity=0.138  Sum_probs=61.6

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhh----Cccc-ccccccccCCCCCcchh
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYER----GLFG-LYHDWCESFNTYPRTYD  134 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eR----GLi~-~~~dwce~f~tyPrtyD  134 (223)
                      +.+.+..  -.+|||+|||.|.++..|.+..  |+.+.+.|.    .++.+.++    |-+- ...|..+.++ .+.+||
T Consensus        64 ~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~----~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD  136 (231)
T 1vbf_A           64 DELDLHK--GQKVLEIGTGIGYYTALIAEIVDKVVSVEINEK----MYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYD  136 (231)
T ss_dssp             HHTTCCT--TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHH----HHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEE
T ss_pred             HhcCCCC--CCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHH----HHHHHHHHHhhcCCeEEEECCcccccc-cCCCcc
Confidence            3444433  3489999999999999998764  555555433    34444333    2122 2233222111 237899


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      +|.+...+.+..         -++-|+|||||.+++....
T Consensus       137 ~v~~~~~~~~~~---------~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          137 RVVVWATAPTLL---------CKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             EEEESSBBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred             EEEECCcHHHHH---------HHHHHHcCCCcEEEEEEcC
Confidence            999987665443         4789999999999998543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.54  E-value=8.3e-09  Score=84.68  Aligned_cols=127  Identities=9%  Similarity=0.055  Sum_probs=72.0

Q ss_pred             eEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCc----ccccc-cccccCCCC-Ccc-hhhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGL----FGLYH-DWCESFNTY-PRT-YDLLHADHL  141 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGL----i~~~~-dwce~f~ty-Prt-yDllH~~~l  141 (223)
                      .+|||+|||+|.++..++.++   |+.+.++|.......+.+...|+    +-++. |..+.++.. +.+ ||+|-++..
T Consensus        55 ~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  134 (201)
T 2ift_A           55 SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPP  134 (201)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCC
T ss_pred             CeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECCC
Confidence            479999999999998765553   55555544322212222233454    22222 322222333 478 999998766


Q ss_pred             hcccccccchhHHHHhh--hhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471          142 FSTIKKRCSLKAVVAEV--DRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK  207 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~--DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K  207 (223)
                      |.    .-..+.++.++  -|+|||||.+++.......   ...  .-.|.......-+...+.+.+|
T Consensus       135 ~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~~---~~~--~~~~~~~~~~~yG~~~~~~~~~  193 (201)
T 2ift_A          135 FH----FNLAEQAISLLCENNWLKPNALIYVETEKDKP---LIT--PENWTLLKEKTTGIVSYRLYQN  193 (201)
T ss_dssp             SS----SCHHHHHHHHHHHTTCEEEEEEEEEEEESSSC---CCC--CTTEEEEEEEEETTEEEEEEEE
T ss_pred             CC----CccHHHHHHHHHhcCccCCCcEEEEEECCCCC---ccc--cchhHHHHHHhcCCEEEEEEec
Confidence            54    12345778888  7899999999998554431   110  1235543322334556666555

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.54  E-value=3.2e-08  Score=83.20  Aligned_cols=113  Identities=12%  Similarity=0.143  Sum_probs=67.5

Q ss_pred             CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh------------Cccc--c-cccccccCCC-C
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER------------GLFG--L-YHDWCESFNT-Y  129 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR------------GLi~--~-~~dwce~f~t-y  129 (223)
                      .-..|||+|||+|+|+..|++.    .|+.+.+++.    .++.+.++            |+..  + ..|..+.++. +
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~----~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQ----VTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHH----HHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHH----HHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc
Confidence            3468999999999999988764    4666666544    22222221            5532  2 2232222332 4


Q ss_pred             C-cchhhhhhhhhhcc-c------ccccchhHHHHhhhhcccCCcEEEE-eccHHHHHHHHHHHHhCC
Q 027471          130 P-RTYDLLHADHLFST-I------KKRCSLKAVVAEVDRILRPDGNLIL-RDDAETIVEVEDLVKSLH  188 (223)
Q Consensus       130 P-rtyDllH~~~lfs~-~------~~rC~i~~vl~E~DRILRPgG~~ii-~D~~~~~~~i~~i~~~l~  188 (223)
                      + .++|.|...  |.. +      ..|-....++.++.|+|+|||.+++ +|.....+.+.+.+..-.
T Consensus       125 ~~~~~d~v~~~--~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  190 (246)
T 2vdv_E          125 EKGQLSKMFFC--FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP  190 (246)
T ss_dssp             CTTCEEEEEEE--SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHST
T ss_pred             cccccCEEEEE--CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCc
Confidence            4 777776532  211 1      1121225899999999999999988 566666666665554443

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.54  E-value=3.1e-08  Score=82.99  Aligned_cols=130  Identities=14%  Similarity=0.148  Sum_probs=76.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---c-cccccccCCCCC-----cchhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---L-YHDWCESFNTYP-----RTYDLL  136 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~-~~dwce~f~tyP-----rtyDll  136 (223)
                      -++|||+|||.|.++.+|++.     .|+.+.+.|.......+.+.+.|+..   + ..|..+.++.++     .+||+|
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V  152 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI  152 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence            358999999999999999875     35666654432222223333346632   2 222222223332     789999


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH------------HHHHHHHHHHHhC----CCeeEEeecCCCe
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA------------ETIVEVEDLVKSL----HWDVRMIYTNDNQ  200 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~------------~~~~~i~~i~~~l----~W~~~~~~~~~~e  200 (223)
                      .++..      .-....++.++-|+|||||.+++.+..            .....++++.+.+    ++......  -.+
T Consensus       153 ~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp--~~d  224 (232)
T 3cbg_A          153 FIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIP--LGD  224 (232)
T ss_dssp             EECSC------GGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEEC--SBT
T ss_pred             EECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEE--cCC
Confidence            87632      123457899999999999999997332            1233444444433    44443322  245


Q ss_pred             eEEEEEec
Q 027471          201 GMLCVHKT  208 (223)
Q Consensus       201 ~~L~~~K~  208 (223)
                      .+.+++|+
T Consensus       225 G~~~~~~~  232 (232)
T 3cbg_A          225 GMTLALKK  232 (232)
T ss_dssp             CEEEEEEC
T ss_pred             eEEEEEeC
Confidence            68888774

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.54  E-value=9e-09  Score=81.07  Aligned_cols=100  Identities=12%  Similarity=0.101  Sum_probs=62.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcc---ccc-ccccccCCCC---Ccchhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLF---GLY-HDWCESFNTY---PRTYDLLHADH  140 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi---~~~-~dwce~f~ty---PrtyDllH~~~  140 (223)
                      -.+|||+|||.|.++.+++++   .|+.+.+.|.......+.+...|+.   -++ .|+.+.++..   +.+||+|-++.
T Consensus        45 ~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~  124 (187)
T 2fhp_A           45 GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP  124 (187)
T ss_dssp             SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECC
Confidence            358999999999999877665   3666666554332223333344552   222 3333322222   57899999876


Q ss_pred             hhcccccccchhHHHHhh--hhcccCCcEEEEeccH
Q 027471          141 LFSTIKKRCSLKAVVAEV--DRILRPDGNLILRDDA  174 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~--DRILRPgG~~ii~D~~  174 (223)
                      .|...    ..+.++.++  .|+|+|||.+++....
T Consensus       125 ~~~~~----~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          125 PYAKQ----EIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             CGGGC----CHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCch----hHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            65521    234555555  9999999999997443

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.53  E-value=2.4e-08  Score=91.44  Aligned_cols=150  Identities=15%  Similarity=0.097  Sum_probs=85.8

Q ss_pred             HhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcc-ccccccc
Q 027471           47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLF-GLYHDWC  123 (223)
Q Consensus        47 ~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi-~~~~dwc  123 (223)
                      ..++...+.+.+ +..   .....-.+|||+|||+|.++..|.+++  |+.+.+.+..-....+.+.+.|+- -+++.  
T Consensus       214 ~~t~~ll~~l~~-~l~---~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~--  287 (381)
T 3dmg_A          214 PASLLLLEALQE-RLG---PEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHS--  287 (381)
T ss_dssp             HHHHHHHHHHHH-HHC---TTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEEC--
T ss_pred             HHHHHHHHHHHH-hhc---ccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEc--
Confidence            445555555543 321   111234589999999999999998875  455555443222122223334432 22222  


Q ss_pred             ccCCC-CC-cchhhhhhhhhhccccc--ccchhHHHHhhhhcccCCcEEEEeccHH--HHHHHHHHHHhCCCeeEEeecC
Q 027471          124 ESFNT-YP-RTYDLLHADHLFSTIKK--RCSLKAVVAEVDRILRPDGNLILRDDAE--TIVEVEDLVKSLHWDVRMIYTN  197 (223)
Q Consensus       124 e~f~t-yP-rtyDllH~~~lfs~~~~--rC~i~~vl~E~DRILRPgG~~ii~D~~~--~~~~i~~i~~~l~W~~~~~~~~  197 (223)
                      ..+.. .+ .+||+|-|...|+....  .-....++.++-|+|||||.+++.....  ....+++.+.    ++... .+
T Consensus       288 D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~----~v~~l-~~  362 (381)
T 3dmg_A          288 DVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFG----AFQTL-KV  362 (381)
T ss_dssp             STTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHS----CCEEE-EE
T ss_pred             chhhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhc----cEEEE-eC
Confidence            12222 23 79999999888875332  2234589999999999999999974433  3344444443    23332 33


Q ss_pred             CCeeEEEEEe
Q 027471          198 DNQGMLCVHK  207 (223)
Q Consensus       198 ~~e~~L~~~K  207 (223)
                      .+=+|+-+.|
T Consensus       363 ~gF~Vl~a~~  372 (381)
T 3dmg_A          363 AEYKVLFAEK  372 (381)
T ss_dssp             SSSEEEEEEC
T ss_pred             CCEEEEEEEE
Confidence            4445555544

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.52  E-value=4.6e-09  Score=81.38  Aligned_cols=99  Identities=11%  Similarity=0.052  Sum_probs=59.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc-cccc-ccccccCCCCC---cchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL-FGLY-HDWCESFNTYP---RTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL-i~~~-~dwce~f~tyP---rtyDllH~~~lfs  143 (223)
                      -.+|||+|||+|.++.+|.+++  |+.+.+.|.......+.+...|+ +-++ .|+.+.++.++   .+||+|.+...|.
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~  121 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA  121 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred             CCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence            3579999999999999998774  44444433221112222233443 1122 22222222222   3899999987776


Q ss_pred             ccccccchhHHHHhhh--hcccCCcEEEEeccH
Q 027471          144 TIKKRCSLKAVVAEVD--RILRPDGNLILRDDA  174 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~D--RILRPgG~~ii~D~~  174 (223)
                        .   ..+.++.++-  |+|+|||.+++....
T Consensus       122 --~---~~~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          122 --M---DLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             --S---CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             --h---hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence              2   2335566666  999999999997543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.52  E-value=1.1e-08  Score=83.42  Aligned_cols=118  Identities=10%  Similarity=0.080  Sum_probs=68.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCC----ChhhHHhhCccc--ccccccccCCCCCcchhhhhhh-
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPD----TLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHAD-  139 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~----~l~~i~eRGLi~--~~~dwce~f~tyPrtyDllH~~-  139 (223)
                      -.+|||+|||+|.++..|+++    .|+.+.+++..-..    ..+....+|+..  .++.-.+.++..+.+ |.+... 
T Consensus        28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~~  106 (218)
T 3mq2_A           28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVLM  106 (218)
T ss_dssp             SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEES
T ss_pred             CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEEc
Confidence            467999999999999999876    35666665541110    011122355532  222222234432244 655421 


Q ss_pred             --hhhc--ccccccchhHHHHhhhhcccCCcEEEEecc------------------HHH-HHHHHHHHHhCCCeeE
Q 027471          140 --HLFS--TIKKRCSLKAVVAEVDRILRPDGNLILRDD------------------AET-IVEVEDLVKSLHWDVR  192 (223)
Q Consensus       140 --~lfs--~~~~rC~i~~vl~E~DRILRPgG~~ii~D~------------------~~~-~~~i~~i~~~l~W~~~  192 (223)
                        ....  +..+   ...+|.|+.|+|||||.++++..                  ... .+.+.+++..--|++.
T Consensus       107 ~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~  179 (218)
T 3mq2_A          107 PWGSLLRGVLGS---SPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLA  179 (218)
T ss_dssp             CCHHHHHHHHTS---SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEE
T ss_pred             cchhhhhhhhcc---HHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCce
Confidence              1110  1111   15899999999999999999621                  111 2347778888888765

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.51  E-value=2.1e-08  Score=89.47  Aligned_cols=95  Identities=13%  Similarity=0.198  Sum_probs=64.1

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC--CeEE--EEecCCCCCCChhhHHh-hCcccccccccccCCCCCcchhhhhhhhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL--KVWV--MNVVPIESPDTLPIIYE-RGLFGLYHDWCESFNTYPRTYDLLHADHLF  142 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~--~V~v--mnv~p~~~~~~l~~i~e-RGLi~~~~dwce~f~tyPrtyDllH~~~lf  142 (223)
                      .....+|||+|||.|.++.+|.++  ++.+  +.+ |..    ++.+.+ .++--+.+|   .|..+|. ||++.+.+++
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~----~~~a~~~~~v~~~~~d---~~~~~~~-~D~v~~~~~l  277 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQV----IENAPPLSGIEHVGGD---MFASVPQ-GDAMILKAVC  277 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHH----HTTCCCCTTEEEEECC---TTTCCCC-EEEEEEESSG
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHH----HHhhhhcCCCEEEeCC---cccCCCC-CCEEEEeccc
Confidence            345689999999999999999875  3444  454 321    111111 122113333   2233555 9999999999


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +++.+. ....+|.++-|+|||||.+++.|
T Consensus       278 h~~~d~-~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          278 HNWSDE-KCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             GGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence            988753 23589999999999999999974

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.51  E-value=1.7e-08  Score=83.48  Aligned_cols=92  Identities=13%  Similarity=0.160  Sum_probs=60.7

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh----Ccc---c-ccccccccCCCC--Ccchhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER----GLF---G-LYHDWCESFNTY--PRTYDLL  136 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR----GLi---~-~~~dwce~f~ty--PrtyDll  136 (223)
                      -.+|||+|||.|.++.+|++.    .|+++.+.|.    .++.+.++    |+.   . ...|..+.++..  +.+||+|
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~----~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  130 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDER----RYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVL  130 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHH----HHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHH----HHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEE
Confidence            358999999999999998765    3555544333    33333333    652   2 222322222223  5789999


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      .+...++      ....++.++-|+|||||.+++.+
T Consensus       131 ~~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          131 FIDAAKG------QYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             EEEGGGS------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred             EECCCHH------HHHHHHHHHHHHcCCCeEEEEEc
Confidence            8864432      34688999999999999999985

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.51  E-value=7.4e-08  Score=86.47  Aligned_cols=95  Identities=13%  Similarity=0.169  Sum_probs=64.8

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc-ccccccccCCCCCcchhhhhhhhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADHLF  142 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~tyPrtyDllH~~~lf  142 (223)
                      ....++|||+|||.|.++..|+++    .++++.+ |..    ++.+.++.-+- +.+|   .|..+|.. |++.+..++
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~d---~~~~~p~~-D~v~~~~vl  271 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHV----IQDAPAFSGVEHLGGD---MFDGVPKG-DAIFIKWIC  271 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHH----HTTCCCCTTEEEEECC---TTTCCCCC-SEEEEESCG
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHH----HHhhhhcCCCEEEecC---CCCCCCCC-CEEEEechh
Confidence            456789999999999999999764    3455554 221    11111111122 3333   33346654 999999999


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +++.+. ....+|.++-|+|||||.+++.|
T Consensus       272 h~~~~~-~~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          272 HDWSDE-HCLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             GGBCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hcCCHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence            988753 23589999999999999999974

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.51  E-value=7.8e-09  Score=97.18  Aligned_cols=110  Identities=12%  Similarity=0.184  Sum_probs=72.7

Q ss_pred             ceEEEeeCCc------hHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCC------Ccch
Q 027471           71 VRNVMDMRAV------YGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY------PRTY  133 (223)
Q Consensus        71 iRnvLDmgaG------~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~ty------Prty  133 (223)
                      -.+|||+|||      +||.+..|.++     .|+.+.++|....      .... +-++..-++.+++-      +.+|
T Consensus       217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~------~~~r-I~fv~GDa~dlpf~~~l~~~d~sF  289 (419)
T 3sso_A          217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV------DELR-IRTIQGDQNDAEFLDRIARRYGPF  289 (419)
T ss_dssp             CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG------CBTT-EEEEECCTTCHHHHHHHHHHHCCE
T ss_pred             CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh------cCCC-cEEEEecccccchhhhhhcccCCc
Confidence            4789999999      67776666543     5777888776421      0111 22222212232222      4899


Q ss_pred             hhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH------------------HHHHHHHHHHHhCCCee
Q 027471          134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA------------------ETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       134 DllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~------------------~~~~~i~~i~~~l~W~~  191 (223)
                      |+|.|+..  +..  ......|.|+-|+|||||.+++.|..                  ..++.+++++..++|.-
T Consensus       290 DlVisdgs--H~~--~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~~~  361 (419)
T 3sso_A          290 DIVIDDGS--HIN--AHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQE  361 (419)
T ss_dssp             EEEEECSC--CCH--HHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTGGG
T ss_pred             cEEEECCc--ccc--hhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhcccc
Confidence            99998643  221  23468899999999999999997443                  24788889988888764

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.49  E-value=4.8e-08  Score=81.01  Aligned_cols=107  Identities=16%  Similarity=0.122  Sum_probs=68.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh-----Ccc--cc-cccccccCCCCC-cchhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER-----GLF--GL-YHDWCESFNTYP-RTYDLL  136 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR-----GLi--~~-~~dwce~f~tyP-rtyDll  136 (223)
                      -.+|||+|||.|.++.+|++.     .|+.+.+.|.    .++.+.++     |..  -+ ..|..+.  .++ .+||+|
T Consensus        97 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~----~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~~~D~v  170 (258)
T 2pwy_A           97 GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPH----HLAQAERNVRAFWQVENVRFHLGKLEEA--ELEEAAYDGV  170 (258)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHH----HHHHHHHHHHHHCCCCCEEEEESCGGGC--CCCTTCEEEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHH----HHHHHHHHHHHhcCCCCEEEEECchhhc--CCCCCCcCEE
Confidence            458999999999999988765     3555555433    33333333     531  12 2232221  144 789998


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCee
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDV  191 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~~  191 (223)
                      -++        --....++.++.|+|||||.+++..... ...++.+.++...|..
T Consensus       171 ~~~--------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~  218 (258)
T 2pwy_A          171 ALD--------LMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRL  218 (258)
T ss_dssp             EEE--------SSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEE
T ss_pred             EEC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence            774        1223488999999999999999986654 4555555565555553

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.48  E-value=3.1e-08  Score=83.27  Aligned_cols=90  Identities=14%  Similarity=0.177  Sum_probs=60.2

Q ss_pred             CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc-ccc-cccccccCCCCCcchhhhhhhhhhc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL-FGL-YHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL-i~~-~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      .-.+|||+|||.|.++..|.+.    .|+.+.+++.    .++.+.+++- +.. ..|. +.++.-+.+||+|.|...  
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~--  157 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKV----AIKAAAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYA--  157 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHH----HHHHHHHHCTTSEEEECCT-TSCSBCTTCEEEEEEESC--
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHH----HHHHHHHhCCCcEEEEcch-hhCCCCCCceeEEEEeCC--
Confidence            3457999999999999999875    3555555433    5566666652 111 2221 223323389999987522  


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                              ...+.|+.|+|||||.+++.+..
T Consensus       158 --------~~~l~~~~~~L~pgG~l~~~~~~  180 (269)
T 1p91_A          158 --------PCKAEELARVVKPGGWVITATPG  180 (269)
T ss_dssp             --------CCCHHHHHHHEEEEEEEEEEEEC
T ss_pred             --------hhhHHHHHHhcCCCcEEEEEEcC
Confidence                    24689999999999999998543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.47  E-value=5.3e-08  Score=85.09  Aligned_cols=131  Identities=10%  Similarity=0.122  Sum_probs=81.8

Q ss_pred             eEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcc---c-ccccccccCCCCCcch---hhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLF---G-LYHDWCESFNTYPRTY---DLLHADHL  141 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi---~-~~~dwce~f~tyPrty---DllH~~~l  141 (223)
                      .+|||+|||.|.++.+|++.   .|+.+.+++..-....+.+...|+-   - ...||.+.   .+.+|   |+|-|.--
T Consensus       125 ~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~---~~~~f~~~D~IvsnPP  201 (284)
T 1nv8_A          125 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---FKEKFASIEMILSNPP  201 (284)
T ss_dssp             CEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---GGGGTTTCCEEEECCC
T ss_pred             CEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh---cccccCCCCEEEEcCC
Confidence            47999999999999999765   4666666554322122223334653   2 23344332   34678   99877521


Q ss_pred             hcc-----------ccc-----ccchhHHHHhhh-hcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEeecCCCeeEEE
Q 027471          142 FST-----------IKK-----RCSLKAVVAEVD-RILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLC  204 (223)
Q Consensus       142 fs~-----------~~~-----rC~i~~vl~E~D-RILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~  204 (223)
                      +..           ...     .+.-..++.++- |.|+|||++++.-.......+.++++..   ....|-.+.+++++
T Consensus       202 yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~---~~~~D~~g~~R~~~  278 (284)
T 1nv8_A          202 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT---VFLKDSAGKYRFLL  278 (284)
T ss_dssp             CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC---EEEECTTSSEEEEE
T ss_pred             CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC---CeecccCCCceEEE
Confidence            111           100     011127888999 9999999999985555556677666554   33445567889988


Q ss_pred             EEec
Q 027471          205 VHKT  208 (223)
Q Consensus       205 ~~K~  208 (223)
                      ++++
T Consensus       279 ~~~k  282 (284)
T 1nv8_A          279 LNRR  282 (284)
T ss_dssp             EECC
T ss_pred             EEEc
Confidence            8775

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.47  E-value=4.3e-08  Score=79.57  Aligned_cols=99  Identities=16%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc--c-cccccccCCCC--Cc
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG--L-YHDWCESFNTY--PR  131 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~--~-~~dwce~f~ty--Pr  131 (223)
                      +.+.+..  -.+|||+|||.|.+++.|.+.     .|+.+.+.|.......+...+.|+..  . ..|.   ...+  +.
T Consensus        71 ~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~  145 (215)
T 2yxe_A           71 ELLDLKP--GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDG---TLGYEPLA  145 (215)
T ss_dssp             HHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCG---GGCCGGGC
T ss_pred             HhhCCCC--CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc---ccCCCCCC
Confidence            3444433  358999999999999988764     46666654432211222222234432  1 1222   2223  37


Q ss_pred             chhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          132 TYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       132 tyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      +||+|.+...+.+..         -++-|+|||||.+++.-..
T Consensus       146 ~fD~v~~~~~~~~~~---------~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          146 PYDRIYTTAAGPKIP---------EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             CEEEEEESSBBSSCC---------HHHHHTEEEEEEEEEEESS
T ss_pred             CeeEEEECCchHHHH---------HHHHHHcCCCcEEEEEECC
Confidence            899999986665443         3889999999999998543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.46  E-value=4.5e-08  Score=83.81  Aligned_cols=107  Identities=10%  Similarity=0.035  Sum_probs=68.7

Q ss_pred             CceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh-----Cccc---ccccccccCCCCC-cchhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER-----GLFG---LYHDWCESFNTYP-RTYDL  135 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR-----GLi~---~~~dwce~f~tyP-rtyDl  135 (223)
                      .-.+|||+|||.|+++..|++.     .|+.+.+.|.    .++.+.++     |+..   ...|..   ..++ .+||+
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~----~~~~a~~~~~~~~g~~~v~~~~~d~~---~~~~~~~fD~  182 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDED----NLKKAMDNLSEFYDIGNVRTSRSDIA---DFISDQMYDA  182 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHH----HHHHHHHHHHTTSCCTTEEEECSCTT---TCCCSCCEEE
T ss_pred             CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHH----HHHHHHHHHHhcCCCCcEEEEECchh---ccCcCCCccE
Confidence            3468999999999999998765     3555544332    33333333     5422   222322   2344 78999


Q ss_pred             hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCee
Q 027471          136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDV  191 (223)
Q Consensus       136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~~  191 (223)
                      |-+.     ..   ....+|.++-|+|||||.+++.+... ...++.+.++...|..
T Consensus       183 Vi~~-----~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~  231 (275)
T 1yb2_A          183 VIAD-----IP---DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH  231 (275)
T ss_dssp             EEEC-----CS---CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred             EEEc-----Cc---CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence            8773     11   23588999999999999999987654 4556655555555554

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.46  E-value=1e-08  Score=84.12  Aligned_cols=93  Identities=18%  Similarity=0.180  Sum_probs=57.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCc-------cc-ccccccccCCCCCcchhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGL-------FG-LYHDWCESFNTYPRTYDLLH  137 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGL-------i~-~~~dwce~f~tyPrtyDllH  137 (223)
                      -.+|||+|||.|.+++.|++.     .|+.+.+.|.......+.+.+.|+       +- ...|..+. ..-+.+||+|+
T Consensus        78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~i~  156 (226)
T 1i1n_A           78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG-YAEEAPYDAIH  156 (226)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC-CGGGCCEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC-cccCCCcCEEE
Confidence            358999999999999988753     466666654322211122222232       22 22232211 11237899999


Q ss_pred             hhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          138 ADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       138 ~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      +...+         ..++.++-|+|||||.+++...
T Consensus       157 ~~~~~---------~~~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          157 VGAAA---------PVVPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             ECSBB---------SSCCHHHHHTEEEEEEEEEEES
T ss_pred             ECCch---------HHHHHHHHHhcCCCcEEEEEEe
Confidence            87443         3456788999999999999743

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.46  E-value=1.1e-07  Score=85.36  Aligned_cols=95  Identities=14%  Similarity=0.168  Sum_probs=64.9

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc-ccccccccCCCCCcchhhhhhhhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADHLF  142 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~tyPrtyDllH~~~lf  142 (223)
                      .....+|||+|||.|.++.+|+++    .++++.+ |.    .++.+.++.-+- +.+|   .|..+|.. |++.+..++
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~D---~~~~~p~~-D~v~~~~vl  269 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PH----VISEAPQFPGVTHVGGD---MFKEVPSG-DTILMKWIL  269 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HH----HHTTCCCCTTEEEEECC---TTTCCCCC-SEEEEESCG
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HH----HHHhhhhcCCeEEEeCC---cCCCCCCC-CEEEehHHh
Confidence            456789999999999999999764    3555555 22    111111111122 3343   33346654 999999999


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +++.+. ....+|.++-|+|||||.+++.|
T Consensus       270 h~~~d~-~~~~~L~~~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          270 HDWSDQ-HCATLLKNCYDALPAHGKVVLVQ  298 (364)
T ss_dssp             GGSCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccCCHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence            988642 23689999999999999999974

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.45  E-value=9.4e-08  Score=79.68  Aligned_cols=131  Identities=17%  Similarity=0.194  Sum_probs=75.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---c-cccccccCCCC------------
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---L-YHDWCESFNTY------------  129 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~-~~dwce~f~ty------------  129 (223)
                      -.+|||+|||.|.++..|++.     .|+.+.+.|.......+.+.+.|+..   + ..|..+.++.+            
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  140 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD  140 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence            458999999999999998754     45666654432221222233335532   1 11211111111            


Q ss_pred             ---C-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc------------HHHHHHHHHH----HHhCCC
Q 027471          130 ---P-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD------------AETIVEVEDL----VKSLHW  189 (223)
Q Consensus       130 ---P-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~------------~~~~~~i~~i----~~~l~W  189 (223)
                         + .+||+|.+...      .-....++.++-|+|||||.+++.+.            ......++++    .+.-++
T Consensus       141 f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (239)
T 2hnk_A          141 FAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLV  214 (239)
T ss_dssp             TCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTE
T ss_pred             ccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCe
Confidence               2 68999987622      12345789999999999999999851            1122233333    344445


Q ss_pred             eeEEeecCCCeeEEEEEecc
Q 027471          190 DVRMIYTNDNQGMLCVHKTY  209 (223)
Q Consensus       190 ~~~~~~~~~~e~~L~~~K~~  209 (223)
                      .+....  -.+.+.+++|++
T Consensus       215 ~~~~~p--~~~g~~~~~~~~  232 (239)
T 2hnk_A          215 DVSLVP--IADGVSLVRKRL  232 (239)
T ss_dssp             EEEEEC--STTCEEEEEECC
T ss_pred             EEEEEE--cCCceEeeeehh
Confidence            544332  245688888875

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.45  E-value=7.8e-08  Score=85.04  Aligned_cols=95  Identities=14%  Similarity=0.175  Sum_probs=65.2

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcc
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFST  144 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~  144 (223)
                      ....+|||+|||.|.++.+|.++    .++++.+ |.......+  + .++--..+|   .|..+|. ||++.+.+++++
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~-~~v~~~~~d---~~~~~p~-~D~v~~~~~lh~  258 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG--S-NNLTYVGGD---MFTSIPN-ADAVLLKYILHN  258 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--B-TTEEEEECC---TTTCCCC-CSEEEEESCGGG
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc--C-CCcEEEecc---ccCCCCC-ccEEEeehhhcc
Confidence            34579999999999999999854    4666666 432111111  0 122113333   2334554 999999999998


Q ss_pred             cccccchhHHHHhhhhcccC---CcEEEEec
Q 027471          145 IKKRCSLKAVVAEVDRILRP---DGNLILRD  172 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRP---gG~~ii~D  172 (223)
                      +.+. ....+|.++-|+|||   ||.+++.|
T Consensus       259 ~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          259 WTDK-DCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             SCHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             CCHH-HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            8753 235899999999999   99999974

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.43  E-value=2.6e-08  Score=83.61  Aligned_cols=45  Identities=9%  Similarity=0.170  Sum_probs=33.0

Q ss_pred             cchhhhhhhhhhccccc------ccchhHHHHhhhhcccCCcEEEEeccHH
Q 027471          131 RTYDLLHADHLFSTIKK------RCSLKAVVAEVDRILRPDGNLILRDDAE  175 (223)
Q Consensus       131 rtyDllH~~~lfs~~~~------rC~i~~vl~E~DRILRPgG~~ii~D~~~  175 (223)
                      ..||+|-|...|....+      .-....++.++.|+|+|||++++.+...
T Consensus       167 ~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  217 (250)
T 1o9g_A          167 SAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRSR  217 (250)
T ss_dssp             CCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcch
Confidence            48999998765543322      1234588999999999999999975543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.43  E-value=5.2e-08  Score=85.47  Aligned_cols=101  Identities=13%  Similarity=0.075  Sum_probs=64.4

Q ss_pred             hhccCCCCCCceEEEeeCCchHHHHHHhhCC--C---eEEEEecCCCCCCChhhHHhhCcccccccccccCCC---CCcc
Q 027471           61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDL--K---VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT---YPRT  132 (223)
Q Consensus        61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~---V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t---yPrt  132 (223)
                      ++.+++..+  .+|||+|||.|.++..|++.  .   |+.+.++|.......+.+.+.|+.. +.--+..+..   .+..
T Consensus        68 ~~~l~~~~~--~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~~~~~  144 (317)
T 1dl5_A           68 MEWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEFSP  144 (317)
T ss_dssp             HHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGCC
T ss_pred             HHhcCCCCc--CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccccCCC
Confidence            344555444  58999999999999998765  2   7777765543222223333446643 1111122222   2378


Q ss_pred             hhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          133 YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       133 yDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      ||+|.+...+.+..         .++.|+|||||.+++...
T Consensus       145 fD~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          145 YDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             EEEEEECSBBSCCC---------HHHHHHEEEEEEEEEEBC
T ss_pred             eEEEEEcCCHHHHH---------HHHHHhcCCCcEEEEEEC
Confidence            99999987776543         467899999999999754

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.42  E-value=1.7e-07  Score=74.08  Aligned_cols=82  Identities=18%  Similarity=0.268  Sum_probs=57.5

Q ss_pred             Ccchhhhhhhhhhccc-ccccchhHHHHhhhhcccCCcEEEEeccHH----------HHHHHHHHHHhCCCeeEEeecC-
Q 027471          130 PRTYDLLHADHLFSTI-KKRCSLKAVVAEVDRILRPDGNLILRDDAE----------TIVEVEDLVKSLHWDVRMIYTN-  197 (223)
Q Consensus       130 PrtyDllH~~~lfs~~-~~rC~i~~vl~E~DRILRPgG~~ii~D~~~----------~~~~i~~i~~~l~W~~~~~~~~-  197 (223)
                      +.+||+|.|..++++. .+   .+.+|.|+.|+|||||++++.++..          ....+.+.++.-.+ +...... 
T Consensus        61 ~~~fD~V~~~~~l~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~  136 (176)
T 2ld4_A           61 ESSFDIILSGLVPGSTTLH---SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQR  136 (176)
T ss_dssp             SSCEEEEEECCSTTCCCCC---CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEE
T ss_pred             CCCEeEEEECChhhhcccC---HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcc
Confidence            3899999998888876 44   3799999999999999999974421          14566666665555 3322100 


Q ss_pred             ------------------CC---eeEEEEEecccCCCcc
Q 027471          198 ------------------DN---QGMLCVHKTYWRPKET  215 (223)
Q Consensus       198 ------------------~~---e~~L~~~K~~w~~~~~  215 (223)
                                        ..   -.+++|+|+-|..+++
T Consensus       137 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~Kp~~~~gs~  175 (176)
T 2ld4_A          137 EPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSS  175 (176)
T ss_dssp             ECCCHHHHHHHHHHTCCCCSSEEEEEEEEECCCSSCCSC
T ss_pred             cCCCHHHHHHHHHHhcccCCceEEEEEeccCCcccccCC
Confidence                              01   4578999998876654

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.41  E-value=1.3e-07  Score=79.65  Aligned_cols=97  Identities=11%  Similarity=0.094  Sum_probs=63.2

Q ss_pred             CceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---c-cccccccCCCC------Ccchh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---L-YHDWCESFNTY------PRTYD  134 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~-~~dwce~f~ty------PrtyD  134 (223)
                      .-++|||+|||.|..+.+|++.     .|+.+.+.|.......+.+.+.|+-.   + ..|..+.++.+      +.+||
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  149 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD  149 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence            3468999999999998888643     46666665443222333344557632   2 23333333333      47899


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +|.++.-      .-....++.++-|+|||||.+++.+
T Consensus       150 ~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          150 FGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEECCc------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence            9887621      1134588999999999999999974

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.40  E-value=1.8e-07  Score=83.63  Aligned_cols=134  Identities=14%  Similarity=0.154  Sum_probs=88.2

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCC--Ce--EEEEecCCCCCCChhhHHh---hCc---cc-ccccccccCCCCCcchh
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDL--KV--WVMNVVPIESPDTLPIIYE---RGL---FG-LYHDWCESFNTYPRTYD  134 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~--~V--~vmnv~p~~~~~~l~~i~e---RGL---i~-~~~dwce~f~tyPrtyD  134 (223)
                      ++++..++|+|+|||.|.++.+|+++  ++  ++.++     |..++.+.+   .+.   +. +-+|   .|..-+..+|
T Consensus       175 ~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-----p~v~~~a~~~~~~~~~~rv~~~~gD---~~~~~~~~~D  246 (353)
T 4a6d_A          175 FDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-----PEVVWTAKQHFSFQEEEQIDFQEGD---FFKDPLPEAD  246 (353)
T ss_dssp             SCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-----HHHHHHHHHHSCC--CCSEEEEESC---TTTSCCCCCS
T ss_pred             cCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-----HHHHHHHHHhhhhcccCceeeecCc---cccCCCCCce
Confidence            45677889999999999999999876  33  34443     222222222   122   21 2333   2333235689


Q ss_pred             hhhhhhhhccccc-ccchhHHHHhhhhcccCCcEEEEeccH--------------H------------HHHHHHHHHHhC
Q 027471          135 LLHADHLFSTIKK-RCSLKAVVAEVDRILRPDGNLILRDDA--------------E------------TIVEVEDLVKSL  187 (223)
Q Consensus       135 llH~~~lfs~~~~-rC~i~~vl~E~DRILRPgG~~ii~D~~--------------~------------~~~~i~~i~~~l  187 (223)
                      ++.+.++++.|.+ .|  ..+|.++-|.|+|||.++|-|..              +            ...+.+++++.-
T Consensus       247 ~~~~~~vlh~~~d~~~--~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~A  324 (353)
T 4a6d_A          247 LYILARVLHDWADGKC--SHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSA  324 (353)
T ss_dssp             EEEEESSGGGSCHHHH--HHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHH
T ss_pred             EEEeeeecccCCHHHH--HHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHC
Confidence            9999999999875 34  68999999999999999987431              0            023566777777


Q ss_pred             CCeeE-EeecCCCeeEEEEEecc
Q 027471          188 HWDVR-MIYTNDNQGMLCVHKTY  209 (223)
Q Consensus       188 ~W~~~-~~~~~~~e~~L~~~K~~  209 (223)
                      -|+.. +........+++|+|..
T Consensus       325 Gf~~v~v~~~~~~~~~i~ArKgt  347 (353)
T 4a6d_A          325 GFRDFQFKKTGAIYDAILARKGT  347 (353)
T ss_dssp             TCEEEEEECCSSSCEEEEEECCC
T ss_pred             CCceEEEEEcCCceEEEEEEecC
Confidence            77754 33334456788999964

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.39  E-value=1.5e-07  Score=80.34  Aligned_cols=106  Identities=16%  Similarity=0.145  Sum_probs=68.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh----Cccc----ccccccccCCCCC-cchhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER----GLFG----LYHDWCESFNTYP-RTYDLL  136 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR----GLi~----~~~dwce~f~tyP-rtyDll  136 (223)
                      -.+|||+|||.|.++..|++.     .|+.+.+.|.    .++.+.++    |+..    ...|.++.   ++ .+||+|
T Consensus       113 ~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~D~V  185 (277)
T 1o54_A          113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREE----FAKLAESNLTKWGLIERVTIKVRDISEG---FDEKDVDAL  185 (277)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHH----HHHHHHHHHHHTTCGGGEEEECCCGGGC---CSCCSEEEE
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHH----HHHHHHHHHHHcCCCCCEEEEECCHHHc---ccCCccCEE
Confidence            348999999999999988765     3444444332    33333333    5522    22333222   55 789998


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH-HHHHHHHHHHHhCCCee
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~-~~~~~i~~i~~~l~W~~  191 (223)
                      -++        --....++.++.|+|+|||.+++.+.. +...++.+.++...|..
T Consensus       186 ~~~--------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~  233 (277)
T 1o54_A          186 FLD--------VPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR  233 (277)
T ss_dssp             EEC--------CSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred             EEC--------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence            774        112348899999999999999998763 45566666666666654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.38  E-value=6.8e-08  Score=82.39  Aligned_cols=97  Identities=14%  Similarity=0.138  Sum_probs=63.2

Q ss_pred             CceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---cc-ccccccCCCC------Ccchh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---LY-HDWCESFNTY------PRTYD  134 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~-~dwce~f~ty------PrtyD  134 (223)
                      .-++|||+|||.|.++..|++.     .|+.+.+.|.......+.+.+.|+-.   ++ .|..+.++.+      +.+||
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  158 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  158 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence            3468999999999999888653     46666665543322333444457632   22 2322223333      57899


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +|.++..      .-....++.++-|+|||||.+++.+
T Consensus       159 ~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          159 FIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             EEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             EEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence            9887622      1234688999999999999999974

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.37  E-value=8.9e-08  Score=79.64  Aligned_cols=100  Identities=16%  Similarity=0.192  Sum_probs=60.9

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCccccccccccc-CCCCC-c-chhh
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCES-FNTYP-R-TYDL  135 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~-f~tyP-r-tyDl  135 (223)
                      +.+.+..  -.+|||+|||.|.+++.|.+.   .|+.+.+.|.......+...+.|+..+ .--+.. ...++ . .||+
T Consensus        85 ~~l~~~~--~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~fD~  161 (235)
T 1jg1_A           85 EIANLKP--GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNV-HVILGDGSKGFPPKAPYDV  161 (235)
T ss_dssp             HHHTCCT--TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSE-EEEESCGGGCCGGGCCEEE
T ss_pred             HhcCCCC--CCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEECCcccCCCCCCCccE
Confidence            3444433  358999999999999999774   567776654422212222233454331 111122 22344 3 4999


Q ss_pred             hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      |.+...+.+.         .-++-|+|||||.+++.-.
T Consensus       162 Ii~~~~~~~~---------~~~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          162 IIVTAGAPKI---------PEPLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             EEECSBBSSC---------CHHHHHTEEEEEEEEEEEC
T ss_pred             EEECCcHHHH---------HHHHHHhcCCCcEEEEEEe
Confidence            9987555433         3478899999999999754

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.36  E-value=2.4e-07  Score=76.98  Aligned_cols=128  Identities=9%  Similarity=0.132  Sum_probs=70.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh-----CcccccccccccC--CCCCcchhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER-----GLFGLYHDWCESF--NTYPRTYDLLHAD  139 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR-----GLi~~~~dwce~f--~tyPrtyDllH~~  139 (223)
                      -.+|||+|||.|.++..|++.    .|+.+.++|..    ++.+.++     .+.-...|..+..  ..++.+||+|.+.
T Consensus        75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~----~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (230)
T 1fbn_A           75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRI----MRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHH----HHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHH----HHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe
Confidence            458999999999999988765    36667766532    2221111     1111222221110  1133789997632


Q ss_pred             hhhcccccccchhHHHHhhhhcccCCcEEEEe----cc-----HH--HHHHHHHHHHhCCCeeEEe-ec---CCCeeEEE
Q 027471          140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILR----DD-----AE--TIVEVEDLVKSLHWDVRMI-YT---NDNQGMLC  204 (223)
Q Consensus       140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~----D~-----~~--~~~~i~~i~~~l~W~~~~~-~~---~~~e~~L~  204 (223)
                           ..+.-....++.++.|+|||||.+++.    ..     ..  ....++ +++...++.... +-   +.+.-+++
T Consensus       151 -----~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~  224 (230)
T 1fbn_A          151 -----VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFV  224 (230)
T ss_dssp             -----CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEE
T ss_pred             -----cCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEE
Confidence                 111111357799999999999999994    11     01  124555 555555554322 11   23456778


Q ss_pred             EEec
Q 027471          205 VHKT  208 (223)
Q Consensus       205 ~~K~  208 (223)
                      ++|+
T Consensus       225 ~~k~  228 (230)
T 1fbn_A          225 GIWE  228 (230)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            8773

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.36  E-value=5.3e-08  Score=79.93  Aligned_cols=128  Identities=8%  Similarity=0.056  Sum_probs=71.2

Q ss_pred             eEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCc--cccc-ccccccCCCCCcchhhhhhhhhhccc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGL--FGLY-HDWCESFNTYPRTYDLLHADHLFSTI  145 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGL--i~~~-~dwce~f~tyPrtyDllH~~~lfs~~  145 (223)
                      .+|||+|||+|.++..++.++   |+.+.++|.......+.+.+.|+  +-++ .|..+.++..+.+||+|-++..|.. 
T Consensus        56 ~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~~-  134 (202)
T 2fpo_A           56 AQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR-  134 (202)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSST-
T ss_pred             CeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCCC-
Confidence            579999999999999766553   45555544322212222333454  2222 2322223333478999988755541 


Q ss_pred             ccccchhHHHHhhh--hcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471          146 KKRCSLKAVVAEVD--RILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK  207 (223)
Q Consensus       146 ~~rC~i~~vl~E~D--RILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K  207 (223)
                         -..+.++.++.  |+|+|||.+++.......  +..  ..-.|.......-+...+.+.+|
T Consensus       135 ---~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~--~~~--~~~~~~~~~~~~~g~~~~~~~~~  191 (202)
T 2fpo_A          135 ---GLLEETINLLEDNGWLADEALIYVESEVENG--LPT--VPANWSLHREKVAGQVAYRLYQR  191 (202)
T ss_dssp             ---TTHHHHHHHHHHTTCEEEEEEEEEEEEGGGC--SCC--CCTTEEEEEEEEETTEEEEEEEE
T ss_pred             ---CcHHHHHHHHHhcCccCCCcEEEEEECCCcc--ccc--cCCcceEEeeeccCCEEEEEEEE
Confidence               12346677774  579999999998554321  000  01246544332334556666554

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.35  E-value=4.7e-07  Score=79.67  Aligned_cols=134  Identities=16%  Similarity=0.133  Sum_probs=77.0

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh------Cc----cccc-ccccccCCC-CCcchh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER------GL----FGLY-HDWCESFNT-YPRTYD  134 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR------GL----i~~~-~dwce~f~t-yPrtyD  134 (223)
                      -.+|||+|||.|+++..|++.    .|+++.+.|.    .++.+.++      ++    +-++ .|..+-... -+++||
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~----~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD  171 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGE----VMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYD  171 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHH----HHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHH----HHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCcee
Confidence            478999999999999999876    3555555443    22322221      11    1222 222211111 248899


Q ss_pred             hhhhhhhhcccccccc-hhHHHHhhhhcccCCcEEEEeccH-----HHHHHHHHHHHhCCCeeE-Eee------cCCCee
Q 027471          135 LLHADHLFSTIKKRCS-LKAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVR-MIY------TNDNQG  201 (223)
Q Consensus       135 llH~~~lfs~~~~rC~-i~~vl~E~DRILRPgG~~ii~D~~-----~~~~~i~~i~~~l~W~~~-~~~------~~~~e~  201 (223)
                      +|-++.........-. -..++.++.|+|||||.+++....     .....+.+.++...+... ...      ..+.-.
T Consensus       172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~  251 (304)
T 3bwc_A          172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIG  251 (304)
T ss_dssp             EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCE
T ss_pred             EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceE
Confidence            9988643322211111 147899999999999999996332     344556666666555432 221      124557


Q ss_pred             EEEEEec
Q 027471          202 MLCVHKT  208 (223)
Q Consensus       202 ~L~~~K~  208 (223)
                      +++|.|.
T Consensus       252 f~~as~~  258 (304)
T 3bwc_A          252 TLVCSKK  258 (304)
T ss_dssp             EEEEESS
T ss_pred             EEEEeCC
Confidence            8889986

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.35  E-value=1.8e-07  Score=82.76  Aligned_cols=120  Identities=17%  Similarity=0.191  Sum_probs=69.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCCcchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      -.+|||+|||.|+++.+|++.     .|+.+.+.+.......+.+...|+..  +++.-...++.++.+||+|-++--.|
T Consensus       119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcs  198 (315)
T 1ixk_A          119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCT  198 (315)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTT
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCC
Confidence            357999999999999988753     36666554432221122222236632  33322223333457899988743222


Q ss_pred             cc------cc------cc-------chhHHHHhhhhcccCCcEEEEec----cHHHHHHHHHHHHhCCCe
Q 027471          144 TI------KK------RC-------SLKAVVAEVDRILRPDGNLILRD----DAETIVEVEDLVKSLHWD  190 (223)
Q Consensus       144 ~~------~~------rC-------~i~~vl~E~DRILRPgG~~ii~D----~~~~~~~i~~i~~~l~W~  190 (223)
                      ..      .+      ..       .-..+|.++-|+|||||.++++.    ..+....++.+++...++
T Consensus       199 g~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~  268 (315)
T 1ixk_A          199 GSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE  268 (315)
T ss_dssp             STTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred             CcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence            11      10      00       01388999999999999999962    233345566676665544

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.34  E-value=3.8e-07  Score=75.16  Aligned_cols=105  Identities=13%  Similarity=0.172  Sum_probs=65.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHh----hCcccccccccccCCC-C-C-cchhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYE----RGLFGLYHDWCESFNT-Y-P-RTYDLLHADHL  141 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~e----RGLi~~~~dwce~f~t-y-P-rtyDllH~~~l  141 (223)
                      -.+|||+|||.|.++..|++.  .|+.+.+.|.    .++.+.+    .|+..-+...+..+.. . + +.||+|-+.  
T Consensus        92 ~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~----~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~--  165 (248)
T 2yvl_A           92 EKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEE----FYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD--  165 (248)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSSEEEEECSCHH----HHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC--
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCEEEEEecCHH----HHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC--
Confidence            358999999999999998875  3444443332    3443333    3552211111222222 3 4 689998764  


Q ss_pred             hcccccccchhHHHHhhhhcccCCcEEEEecc-HHHHHHHHHHHHhC
Q 027471          142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSL  187 (223)
Q Consensus       142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~-~~~~~~i~~i~~~l  187 (223)
                            -.....++.++-|+|||||.+++... .+...++...++..
T Consensus       166 ------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  206 (248)
T 2yvl_A          166 ------VREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY  206 (248)
T ss_dssp             ------SSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred             ------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence                  12335889999999999999999876 44555555555444

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.34  E-value=3.7e-07  Score=92.70  Aligned_cols=97  Identities=14%  Similarity=0.188  Sum_probs=68.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC-----eEEEEecCCCCCCChhhHHh----------hCcc--cccccccccCCCCCcch
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK-----VWVMNVVPIESPDTLPIIYE----------RGLF--GLYHDWCESFNTYPRTY  133 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~-----V~vmnv~p~~~~~~l~~i~e----------RGLi--~~~~dwce~f~tyPrty  133 (223)
                      -.+|||+|||.|.++.+|++++     |+.+.+++.    .++.+.+          .|+.  -+++.-.+.++..+++|
T Consensus       722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~e----mLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sF  797 (950)
T 3htx_A          722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPK----GLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDV  797 (950)
T ss_dssp             CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHH----HHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSC
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHH----HHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCe
Confidence            4689999999999999999875     556666554    3444433          2553  23332222334344899


Q ss_pred             hhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       134 DllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      |+|.|..+|.+..+. ....++.|+-|+|||| .++++++
T Consensus       798 DlVV~~eVLeHL~dp-~l~~~L~eI~RvLKPG-~LIISTP  835 (950)
T 3htx_A          798 DIGTCLEVIEHMEED-QACEFGEKVLSLFHPK-LLIVSTP  835 (950)
T ss_dssp             CEEEEESCGGGSCHH-HHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred             eEEEEeCchhhCChH-HHHHHHHHHHHHcCCC-EEEEEec
Confidence            999999999988762 2346899999999999 8888753

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.32  E-value=2.7e-08  Score=82.16  Aligned_cols=90  Identities=14%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----------CeEEEEecCCCCCCChhhHHhhC-----c--cc-ccccccccCCCCC--
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----------KVWVMNVVPIESPDTLPIIYERG-----L--FG-LYHDWCESFNTYP--  130 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----------~V~vmnv~p~~~~~~l~~i~eRG-----L--i~-~~~dwce~f~tyP--  130 (223)
                      -.+|||+|||.|.+++.|.+.          .|+.+.+.|.......+.+.+.|     .  +- ...|..+   .++  
T Consensus        85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~  161 (227)
T 1r18_A           85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK---GYPPN  161 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG---CCGGG
T ss_pred             CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc---CCCcC
Confidence            348999999999999988763          46666665442221122222223     1  22 2223222   244  


Q ss_pred             cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          131 RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       131 rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      .+||+|++...+.         .++.++-|+|||||.+++.-
T Consensus       162 ~~fD~I~~~~~~~---------~~~~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          162 APYNAIHVGAAAP---------DTPTELINQLASGGRLIVPV  194 (227)
T ss_dssp             CSEEEEEECSCBS---------SCCHHHHHTEEEEEEEEEEE
T ss_pred             CCccEEEECCchH---------HHHHHHHHHhcCCCEEEEEE
Confidence            6899999875443         34578899999999999974

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.32  E-value=2.2e-08  Score=82.13  Aligned_cols=93  Identities=15%  Similarity=0.107  Sum_probs=57.0

Q ss_pred             eEEEeeCCchHHHHHHhhCC---------CeEEEEecCCCCCCChhhHHhhCc-------cccc-ccccccCC---CCCc
Q 027471           72 RNVMDMRAVYGGFAAALKDL---------KVWVMNVVPIESPDTLPIIYERGL-------FGLY-HDWCESFN---TYPR  131 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~---------~V~vmnv~p~~~~~~l~~i~eRGL-------i~~~-~dwce~f~---tyPr  131 (223)
                      .+|||+|||.|.+++.|.+.         .|+.+.+.|.......+.+.+.|+       +-++ .|..+.++   .-+.
T Consensus        82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  161 (227)
T 2pbf_A           82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELG  161 (227)
T ss_dssp             CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHC
T ss_pred             CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCC
Confidence            58999999999999988763         456666544322212222333352       2222 22211110   1127


Q ss_pred             chhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          132 TYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       132 tyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      .||+|++...+.         .++.++-|+|+|||.+++.-.
T Consensus       162 ~fD~I~~~~~~~---------~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          162 LFDAIHVGASAS---------ELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             CEEEEEECSBBS---------SCCHHHHHHEEEEEEEEEEEE
T ss_pred             CcCEEEECCchH---------HHHHHHHHhcCCCcEEEEEEc
Confidence            899999875443         356788999999999999743

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.32  E-value=6.6e-07  Score=77.72  Aligned_cols=132  Identities=15%  Similarity=0.108  Sum_probs=74.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhh-----Cc-----------ccccc-cccccCCCCC
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYER-----GL-----------FGLYH-DWCESFNTYP  130 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eR-----GL-----------i~~~~-dwce~f~tyP  130 (223)
                      -++|||+|||.|+++..+++++   |+++.+.|.    .++.+.++     |+           +-++. |-.+.+.. +
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~----~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~  150 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDED----VIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-N  150 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHH----HHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-C
T ss_pred             CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHH----HHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-c
Confidence            4689999999999999998874   455555433    22222221     32           11222 21111222 6


Q ss_pred             cchhhhhhhhhhcccccccc--hhHHHHhhhhcccCCcEEEEec-----cHHHHHHHHHHHHhCCCeeEEee----c-CC
Q 027471          131 RTYDLLHADHLFSTIKKRCS--LKAVVAEVDRILRPDGNLILRD-----DAETIVEVEDLVKSLHWDVRMIY----T-ND  198 (223)
Q Consensus       131 rtyDllH~~~lfs~~~~rC~--i~~vl~E~DRILRPgG~~ii~D-----~~~~~~~i~~i~~~l~W~~~~~~----~-~~  198 (223)
                      ++||+|-++.. ......-.  ...++.++.|+|+|||.+++..     ..+....+.+.++..--.+....    + .+
T Consensus       151 ~~fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g  229 (281)
T 1mjf_A          151 RGFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYAS  229 (281)
T ss_dssp             CCEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSS
T ss_pred             CCeeEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCc
Confidence            78999988633 22211111  2578999999999999999962     23334444444443322333221    1 34


Q ss_pred             CeeEEEEEec
Q 027471          199 NQGMLCVHKT  208 (223)
Q Consensus       199 ~e~~L~~~K~  208 (223)
                      ...+++|.|.
T Consensus       230 ~~~~~~as~~  239 (281)
T 1mjf_A          230 PWAFLVGVKG  239 (281)
T ss_dssp             SEEEEEEEES
T ss_pred             eEEEEEeeCC
Confidence            5778999987

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.29  E-value=3.3e-07  Score=77.40  Aligned_cols=106  Identities=16%  Similarity=0.164  Sum_probs=64.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh-----C-ccc---c-cccccccCCCC-Ccchh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER-----G-LFG---L-YHDWCESFNTY-PRTYD  134 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR-----G-Li~---~-~~dwce~f~ty-PrtyD  134 (223)
                      -.+|||+|||.|.++.+|++.     .|+.+.+.|.    .++.+.++     | +..   + ..|.++ ++ + +.+||
T Consensus       100 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~----~~~~a~~~~~~~~g~~~~~v~~~~~d~~~-~~-~~~~~~D  173 (280)
T 1i9g_A          100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRAD----HAEHARRNVSGCYGQPPDNWRLVVSDLAD-SE-LPDGSVD  173 (280)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHH----HHHHHHHHHHHHHTSCCTTEEEECSCGGG-CC-CCTTCEE
T ss_pred             CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHH----HHHHHHHHHHHhcCCCCCcEEEEECchHh-cC-CCCCcee
Confidence            347999999999999998764     3444444332    33333332     4 221   2 223222 11 3 37899


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH-HHHHHHHHHHHh-CCCe
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKS-LHWD  190 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~-~~~~~i~~i~~~-l~W~  190 (223)
                      +|-+.        -.....++.++.|+|||||.+++.... +.+.++...++. ..|.
T Consensus       174 ~v~~~--------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~  223 (280)
T 1i9g_A          174 RAVLD--------MLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT  223 (280)
T ss_dssp             EEEEE--------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred             EEEEC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence            98773        113348899999999999999997543 344444444333 5554

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.29  E-value=1.7e-07  Score=83.06  Aligned_cols=94  Identities=15%  Similarity=0.235  Sum_probs=63.1

Q ss_pred             CceEEEeeCCchHHHHHHhhCC--C--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL--K--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTI  145 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~--~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~  145 (223)
                      ...+|||+|||.|.++.+|.++  +  ++++.+ |.......+  + .++--+.+|.   |..+| .||++.+.++|+++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~-~~v~~~~~d~---~~~~~-~~D~v~~~~vlh~~  264 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG--N-ENLNFVGGDM---FKSIP-SADAVLLKWVLHDW  264 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC--C-SSEEEEECCT---TTCCC-CCSEEEEESCGGGS
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc--C-CCcEEEeCcc---CCCCC-CceEEEEcccccCC
Confidence            4579999999999999999765  3  455555 311111111  1 1221133332   23355 49999999999988


Q ss_pred             ccccchhHHHHhhhhcccC---CcEEEEec
Q 027471          146 KKRCSLKAVVAEVDRILRP---DGNLILRD  172 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRP---gG~~ii~D  172 (223)
                      .+. ....+|.++-|+|||   ||.+++.|
T Consensus       265 ~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          265 NDE-QSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             CHH-HHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             CHH-HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            753 125899999999999   99999864

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.29  E-value=2.3e-07  Score=80.10  Aligned_cols=113  Identities=12%  Similarity=0.049  Sum_probs=70.0

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCCcchhhhhhhhhhcc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHADHLFST  144 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDllH~~~lfs~  144 (223)
                      -.+|||+|||+|+|+..|+++    .|+.+.++|.......+-+...|+-.  ++..-++.+ ..+.+||+|-++...  
T Consensus       120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~Vi~d~p~--  196 (272)
T 3a27_A          120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRVIMGYVH--  196 (272)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEEEECCCS--
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEEEECCcc--
Confidence            358999999999999988765    46777665543222222233345422  222212222 125689998776322  


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEeccHH------HH-HHHHHHHHhCCCee
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRDDAE------TI-VEVEDLVKSLHWDV  191 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~------~~-~~i~~i~~~l~W~~  191 (223)
                           ....++.++-|+|+|||.+++++...      .. ..++.+.+.+.+++
T Consensus       197 -----~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (272)
T 3a27_A          197 -----KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKL  245 (272)
T ss_dssp             -----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEE
T ss_pred             -----cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCee
Confidence                 45688999999999999999984432      33 33444555555544

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.28  E-value=2.8e-07  Score=86.77  Aligned_cols=100  Identities=11%  Similarity=0.139  Sum_probs=66.1

Q ss_pred             CceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhcc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFST  144 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~  144 (223)
                      .-.+|||+|||.|.++..+++.   .|+.+.+++ ......+.+.+.|+-.-+.=.+..+..  +|..||+|-|..++.+
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~~  236 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYM  236 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHHH
T ss_pred             CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchHh
Confidence            3468999999999999988876   356666655 322234445556763211111223333  5688999999766655


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEe
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ..+. .+...+.++.|+|+|||.+++.
T Consensus       237 ~~~e-~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          237 LFNE-RMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             HTCH-HHHHHHHHGGGGEEEEEEEESC
T ss_pred             cCcH-HHHHHHHHHHHhcCCCCEEEEE
Confidence            5432 3456777999999999999863

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.27  E-value=1.3e-07  Score=83.16  Aligned_cols=95  Identities=13%  Similarity=0.041  Sum_probs=54.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhC----------c---ccc-cccccccCCCCC-
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERG----------L---FGL-YHDWCESFNTYP-  130 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRG----------L---i~~-~~dwce~f~tyP-  130 (223)
                      -.+|||+|||.|.++.+|++.     .|+.+.+.|.......+.+.+.|          +   +-+ ..|.++....++ 
T Consensus       106 g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~  185 (336)
T 2b25_A          106 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKS  185 (336)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCC
Confidence            458999999999999988764     35666654432111111111111          1   222 233333222344 


Q ss_pred             cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          131 RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       131 rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      .+||+|.++.        ..-..++.++.|+|||||.+++...
T Consensus       186 ~~fD~V~~~~--------~~~~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          186 LTFDAVALDM--------LNPHVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             --EEEEEECS--------SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             CCeeEEEECC--------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            6899988751        1123578999999999999998654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.24  E-value=4e-06  Score=74.64  Aligned_cols=130  Identities=11%  Similarity=0.127  Sum_probs=77.1

Q ss_pred             cCCCCCCceEEEeeCC------chHH-HHHHhhC--CCeEEEEecCCCCCCChhhHHhhCccc-ccccccccCCCCCcch
Q 027471           64 MGINWSFVRNVMDMRA------VYGG-FAAALKD--LKVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTY  133 (223)
Q Consensus        64 l~i~~~~iRnvLDmga------G~Gg-FAA~L~~--~~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~tyPrty  133 (223)
                      +.++.+  .+|||+||      |.|+ .+|.+..  -.|+.+.++|.     +     .++-- +..|+. .++ ++.+|
T Consensus        59 l~l~~g--~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-----v-----~~v~~~i~gD~~-~~~-~~~~f  124 (290)
T 2xyq_A           59 LAVPYN--MRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-----V-----SDADSTLIGDCA-TVH-TANKW  124 (290)
T ss_dssp             CCCCTT--CEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-----B-----CSSSEEEESCGG-GCC-CSSCE
T ss_pred             cCCCCC--CEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-----C-----CCCEEEEECccc-cCC-ccCcc
Confidence            344443  57999999      5586 3444443  35778888776     1     12221 233332 222 35889


Q ss_pred             hhhhhhhhhcc--------cccccchhHHHHhhhhcccCCcEEEEeccH-HHHHHHHHHHHhCCCe-eEEe--ecCCCee
Q 027471          134 DLLHADHLFST--------IKKRCSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWD-VRMI--YTNDNQG  201 (223)
Q Consensus       134 DllH~~~lfs~--------~~~rC~i~~vl~E~DRILRPgG~~ii~D~~-~~~~~i~~i~~~l~W~-~~~~--~~~~~e~  201 (223)
                      |+|.|+...+.        ......++.++.|+-|+|||||.|++.... .....+.++++...+. +...  ..++.|.
T Consensus       125 D~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~asr~~s~e~  204 (290)
T 2xyq_A          125 DLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEA  204 (290)
T ss_dssp             EEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGGGTTSSCE
T ss_pred             cEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEcCCCchhe
Confidence            99998633221        111122357899999999999999996422 1234666677776443 3333  1245789


Q ss_pred             EEEEEe
Q 027471          202 MLCVHK  207 (223)
Q Consensus       202 ~L~~~K  207 (223)
                      +|+|+.
T Consensus       205 ~lv~~~  210 (290)
T 2xyq_A          205 FLIGAN  210 (290)
T ss_dssp             EEEEEE
T ss_pred             EEecCC
Confidence            998886

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.23  E-value=4.4e-07  Score=85.13  Aligned_cols=106  Identities=11%  Similarity=0.015  Sum_probs=65.6

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCC-------hhhHHhhCcc-c---ccccccc
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDT-------LPIIYERGLF-G---LYHDWCE  124 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~-------l~~i~eRGLi-~---~~~dwce  124 (223)
                      .++.+++..  -.+|||+|||+|.+++.|++.    .|+.+.+++......       .+.+...|+- +   +++  +.
T Consensus       234 ml~~l~l~~--g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~--gD  309 (433)
T 1u2z_A          234 VYQQCQLKK--GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL--KK  309 (433)
T ss_dssp             HHHHTTCCT--TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE--SS
T ss_pred             HHHhcCCCC--CCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE--cC
Confidence            444454443  468999999999999998874    366676655421111       2223344631 2   222  12


Q ss_pred             cCCC---C---CcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          125 SFNT---Y---PRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       125 ~f~t---y---PrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      .+..   +   +.+||+|-+...+. .   -.+..+|.|+-|+|||||.+++.+.
T Consensus       310 ~~~~~~~~~~~~~~FDvIvvn~~l~-~---~d~~~~L~el~r~LKpGG~lVi~d~  360 (433)
T 1u2z_A          310 SFVDNNRVAELIPQCDVILVNNFLF-D---EDLNKKVEKILQTAKVGCKIISLKS  360 (433)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTC-C---HHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             ccccccccccccCCCCEEEEeCccc-c---ccHHHHHHHHHHhCCCCeEEEEeec
Confidence            3321   2   47899998864331 1   1345788999999999999999864

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.22  E-value=2e-06  Score=75.50  Aligned_cols=134  Identities=10%  Similarity=0.061  Sum_probs=74.7

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-C---eEEEEecCCCCCCChhhHHh------hCc----cccc-ccccccCCCCCcchhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-K---VWVMNVVPIESPDTLPIIYE------RGL----FGLY-HDWCESFNTYPRTYDL  135 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-~---V~vmnv~p~~~~~~l~~i~e------RGL----i~~~-~dwce~f~tyPrtyDl  135 (223)
                      -.+|||+|||.|+++..++++ +   |+++.+.|.    .++.+.+      .|+    +-++ .|..+.++..+++||+
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~----~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~  166 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGL----VIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDV  166 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHH----HHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHH----HHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceE
Confidence            378999999999999999887 3   455555443    2222222      122    1222 2222223334588999


Q ss_pred             hhhhhhhcc-ccc--ccchhHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCeeEEee------cCCCee
Q 027471          136 LHADHLFST-IKK--RCSLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMIY------TNDNQG  201 (223)
Q Consensus       136 lH~~~lfs~-~~~--rC~i~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~~~~~------~~~~e~  201 (223)
                      |-++ ++.. ...  .-....++.++.|+|+|||.+++...     .+....+.+.+++.--.+....      ..+...
T Consensus       167 Ii~d-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~  245 (296)
T 1inl_A          167 IIID-STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWS  245 (296)
T ss_dssp             EEEE-C----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEE
T ss_pred             EEEc-CCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceE
Confidence            9875 2222 111  00125789999999999999999722     2223333333333322333221      134567


Q ss_pred             EEEEEecc
Q 027471          202 MLCVHKTY  209 (223)
Q Consensus       202 ~L~~~K~~  209 (223)
                      +++|.|++
T Consensus       246 f~~as~~~  253 (296)
T 1inl_A          246 YTFASKGI  253 (296)
T ss_dssp             EEEEESSC
T ss_pred             EEEecCCC
Confidence            89999874

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.21  E-value=1.4e-06  Score=77.12  Aligned_cols=134  Identities=15%  Similarity=0.111  Sum_probs=77.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHh------hC-c----cccc-ccccccCCCCCcchh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYE------RG-L----FGLY-HDWCESFNTYPRTYD  134 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~e------RG-L----i~~~-~dwce~f~tyPrtyD  134 (223)
                      -++|||+|||.|+++..|+++    .|+++.+.|.    .++.+.+      +| +    +-++ .|-.+.++..+.+||
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~----~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD  153 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGE----LVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHH----HHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHH----HHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCcc
Confidence            478999999999999999887    3555555443    2222221      22 1    1222 221111222358899


Q ss_pred             hhhhhhhhccc---cc--ccchhHHHHhhhhcccCCcEEEEecc------HHHHHHHHHHHHhCCCeeEEee----c-CC
Q 027471          135 LLHADHLFSTI---KK--RCSLKAVVAEVDRILRPDGNLILRDD------AETIVEVEDLVKSLHWDVRMIY----T-ND  198 (223)
Q Consensus       135 llH~~~lfs~~---~~--rC~i~~vl~E~DRILRPgG~~ii~D~------~~~~~~i~~i~~~l~W~~~~~~----~-~~  198 (223)
                      +|-++.. ...   ..  .-....++.++.|+|+|||.+++...      .+....+.+.++..--.+....    + .+
T Consensus       154 ~Ii~d~~-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g  232 (314)
T 1uir_A          154 VVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFL  232 (314)
T ss_dssp             EEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTE
T ss_pred             EEEECCC-CcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCC
Confidence            9998633 332   11  11135889999999999999998621      2334445444555433333221    1 23


Q ss_pred             CeeEEEEEecc
Q 027471          199 NQGMLCVHKTY  209 (223)
Q Consensus       199 ~e~~L~~~K~~  209 (223)
                      .-.+++|.|.+
T Consensus       233 ~~~~~~as~~~  243 (314)
T 1uir_A          233 NFGFLLASDAF  243 (314)
T ss_dssp             EEEEEEEESSS
T ss_pred             eEEEEEEECCC
Confidence            45688899873

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.21  E-value=2.6e-06  Score=73.99  Aligned_cols=135  Identities=16%  Similarity=0.155  Sum_probs=78.5

Q ss_pred             CceEEEeeCCchHHHHHHhhCC-C---eEEEEecCCCCCCChhhHHhh------Cc----ccccc-cccccCCCCCcchh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL-K---VWVMNVVPIESPDTLPIIYER------GL----FGLYH-DWCESFNTYPRTYD  134 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~-~---V~vmnv~p~~~~~~l~~i~eR------GL----i~~~~-dwce~f~tyPrtyD  134 (223)
                      .-++|||+|||.|+++.+++++ +   |+++.+.|.    .++.+.+.      ++    +-+++ |-.+-+...+.+||
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~----~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD  150 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGK----VIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYD  150 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHH----HHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHH----HHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCee
Confidence            4578999999999999999887 4   455555333    22222221      22    22222 21111222358899


Q ss_pred             hhhhhhhhccccc--ccchhHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCeeEEee----c--CCCee
Q 027471          135 LLHADHLFSTIKK--RCSLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMIY----T--NDNQG  201 (223)
Q Consensus       135 llH~~~lfs~~~~--rC~i~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~~~~~----~--~~~e~  201 (223)
                      +|-++. +.....  ......++.++-|+|+|||.+++...     .+....+.+.+++.--.+....    +  .+.-.
T Consensus       151 ~Ii~d~-~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~  229 (275)
T 1iy9_A          151 VIMVDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWT  229 (275)
T ss_dssp             EEEESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEE
T ss_pred             EEEECC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceE
Confidence            998863 332211  11124789999999999999999732     2334444444444423333221    1  34567


Q ss_pred             EEEEEecc
Q 027471          202 MLCVHKTY  209 (223)
Q Consensus       202 ~L~~~K~~  209 (223)
                      +++|.|++
T Consensus       230 ~~~ask~~  237 (275)
T 1iy9_A          230 FTIGSKKY  237 (275)
T ss_dssp             EEEEESSC
T ss_pred             EEEeeCCC
Confidence            88999874

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.19  E-value=1.5e-07  Score=81.08  Aligned_cols=116  Identities=16%  Similarity=0.176  Sum_probs=65.7

Q ss_pred             ceEEEeeCCchHHHHHHhhC-----CCeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCC----Ccchhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKD-----LKVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTY----PRTYDLLHAD  139 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~-----~~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~ty----PrtyDllH~~  139 (223)
                      -.+|||+|||.|+++..|++     ..|+.+.+.+.......+.+...|+..  +++.-...+...    +..||+|-++
T Consensus        84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d  163 (274)
T 3ajd_A           84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLD  163 (274)
T ss_dssp             TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEE
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEc
Confidence            35899999999999988875     246667665442221122222236522  222111122221    5689998876


Q ss_pred             hhhcccc--------------c-ccchhHHHHhhhhcccCCcEEEEec----cHHHHHHHHHHHHh
Q 027471          140 HLFSTIK--------------K-RCSLKAVVAEVDRILRPDGNLILRD----DAETIVEVEDLVKS  186 (223)
Q Consensus       140 ~lfs~~~--------------~-rC~i~~vl~E~DRILRPgG~~ii~D----~~~~~~~i~~i~~~  186 (223)
                      --+|...              + .-....+|.++-|+|||||.++++.    ..+.-..++.+++.
T Consensus       164 ~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~  229 (274)
T 3ajd_A          164 APCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK  229 (274)
T ss_dssp             ECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHH
T ss_pred             CCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHh
Confidence            3333211              0 0122478999999999999999962    22334455665543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.19  E-value=1.4e-06  Score=70.19  Aligned_cols=116  Identities=15%  Similarity=0.080  Sum_probs=74.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCc-ccccccccccCCCCCcchhhhhhhhhhcccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNTYPRTYDLLHADHLFSTIK  146 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~tyPrtyDllH~~~lfs~~~  146 (223)
                      -.+|||+|||.|.++.+|.+.+   |+.+.+.|.......+.+...|+ +-+++   ..+..+|.+||+|-++.-|....
T Consensus        50 ~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~---~d~~~~~~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           50 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFI---GDVSEFNSRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEE---SCGGGCCCCCSEEEECCCCSSSS
T ss_pred             cCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEE---CchHHcCCCCCEEEEcCCCcccc
Confidence            4689999999999999998763   66666654322211222222343 22222   34444678999999987776554


Q ss_pred             cccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhCCCeeE
Q 027471          147 KRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       147 ~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l~W~~~  192 (223)
                      .. ....++.++-|+|  ||.+++. ......+.+.+++....+++.
T Consensus       127 ~~-~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  170 (207)
T 1wy7_A          127 KH-ADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVT  170 (207)
T ss_dssp             TT-TTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEE
T ss_pred             CC-chHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEE
Confidence            32 2346788889998  6655554 366667778888888777764

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.19  E-value=4.1e-08  Score=82.20  Aligned_cols=102  Identities=11%  Similarity=0.029  Sum_probs=54.1

Q ss_pred             CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcc---ccccccccc--CCCCC----cchhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLF---GLYHDWCES--FNTYP----RTYDLL  136 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi---~~~~dwce~--f~tyP----rtyDll  136 (223)
                      .-.+|||+|||+|.++..|+.+    .|+.+.++|.......+.+...|+-   -+++.-++.  +..++    .+||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            3458999999999998888654    5666776554332222333344653   333321111  22344    589999


Q ss_pred             hhhhhhccccc------------ccchhHHHHhhhhcccCCcEEEEe
Q 027471          137 HADHLFSTIKK------------RCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       137 H~~~lfs~~~~------------rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      -|.--|.....            ......++.++.|+|||||.+.+.
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            88744432210            011124566777888887766554

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.17  E-value=2.1e-07  Score=80.45  Aligned_cols=118  Identities=13%  Similarity=0.054  Sum_probs=69.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEe-cCCCCCCChhhHH------hhCc-------cc-ccccccccCCCC---
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNV-VPIESPDTLPIIY------ERGL-------FG-LYHDWCESFNTY---  129 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv-~p~~~~~~l~~i~------eRGL-------i~-~~~dwce~f~ty---  129 (223)
                      -.+|||+|||+|.++..|+..   .|+.+.+ .|.... ..+.+.      ..|+       +- ...+|++.....   
T Consensus        80 ~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~-~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  158 (281)
T 3bzb_A           80 GKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILN-SLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC  158 (281)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHH-HHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred             CCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHH-HHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence            358999999999999888776   3555666 343211 111111      2232       21 235576654432   


Q ss_pred             --CcchhhhhhhhhhcccccccchhHHHHhhhhccc---C--CcEEEEe-cc-HH----HHHHHHHHHHhCC-CeeE
Q 027471          130 --PRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILR---P--DGNLILR-DD-AE----TIVEVEDLVKSLH-WDVR  192 (223)
Q Consensus       130 --PrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILR---P--gG~~ii~-D~-~~----~~~~i~~i~~~l~-W~~~  192 (223)
                        +.+||+|-++.++.+..   ....++.++.|+|+   |  ||.+++. .. ..    ...++.+.++... +++.
T Consensus       159 ~~~~~fD~Ii~~dvl~~~~---~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~  232 (281)
T 3bzb_A          159 TGLQRFQVVLLADLLSFHQ---AHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAE  232 (281)
T ss_dssp             HSCSSBSEEEEESCCSCGG---GHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEE
T ss_pred             ccCCCCCEEEEeCcccChH---HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEE
Confidence              47899998876665433   25689999999999   9  9976553 22 11    1234444555555 6554

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.17  E-value=5.6e-07  Score=82.84  Aligned_cols=122  Identities=16%  Similarity=0.090  Sum_probs=69.8

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccc--cccccccCCCCCcchhhhhhhhh-hccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGL--YHDWCESFNTYPRTYDLLHADHL-FSTI  145 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~--~~dwce~f~tyPrtyDllH~~~l-fs~~  145 (223)
                      -.+|||+|||+|+|+.+++..+  |+.+.++|..-....+-+...|+-..  ..|..+.++.++..||+|.++-- |+..
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~  294 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVKR  294 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCSS
T ss_pred             CCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCCC
Confidence            3589999999999999998765  45555544422212222333455421  22222222334545999987522 2211


Q ss_pred             cc-----ccchhHHHHhhhhcccCCcEEEEecc------HHHHHHHHHHHHhCCCeeE
Q 027471          146 KK-----RCSLKAVVAEVDRILRPDGNLILRDD------AETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       146 ~~-----rC~i~~vl~E~DRILRPgG~~ii~D~------~~~~~~i~~i~~~l~W~~~  192 (223)
                      ..     ......++.++-|+|+|||.+++...      ......+++.+....-+..
T Consensus       295 ~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~  352 (393)
T 4dmg_A          295 PEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLR  352 (393)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEE
Confidence            10     11234788999999999999996522      2234556565555544443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.16  E-value=1.3e-06  Score=77.56  Aligned_cols=122  Identities=11%  Similarity=0.014  Sum_probs=73.6

Q ss_pred             CCCceEEEeeCCchHHHHHHhhC-----CCeEEEEecCCCCCCChhhHHhhCc--ccccccccccCCCCCcchhhhhhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKD-----LKVWVMNVVPIESPDTLPIIYERGL--FGLYHDWCESFNTYPRTYDLLHADH  140 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~-----~~V~vmnv~p~~~~~~l~~i~eRGL--i~~~~dwce~f~tyPrtyDllH~~~  140 (223)
                      +..-..|||+|||.|+++..++.     ..|+.+.+.|.......+-+...|+  +-+.+.-...++.....||+|-|+-
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~np  280 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANP  280 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECC
Confidence            33456899999999999776655     4577777765543323333444565  3333321222333336789999864


Q ss_pred             hhcccc-c----ccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE
Q 027471          141 LFSTIK-K----RCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       141 lfs~~~-~----rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~  192 (223)
                      -|..-. +    ......++.++.|+|||||.+++......  .++.+.+ ..|+..
T Consensus       281 Pyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~--~~~~~~~-~g~~~~  334 (354)
T 3tma_A          281 PHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPA--LLKRALP-PGFALR  334 (354)
T ss_dssp             CSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHH--HHHHHCC-TTEEEE
T ss_pred             CCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHH--HHHHHhh-cCcEEE
Confidence            443211 1    11125789999999999999988755442  2445555 667654

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.16  E-value=9.5e-07  Score=81.36  Aligned_cols=100  Identities=16%  Similarity=0.170  Sum_probs=65.8

Q ss_pred             ceEEEeeCCchHHHHHHhhC---CCeEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhccc
Q 027471           71 VRNVMDMRAVYGGFAAALKD---LKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFSTI  145 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~---~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~~  145 (223)
                      -..|||+|||+|-++-..++   +.|+.+..+| ......+.+.+.|+-..+.-.+.....  .|.-||+|=|.-+-+..
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l  162 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGL  162 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTB
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccccc
Confidence            34799999999986544443   4688877654 233366677778884432222234333  56889998774332333


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEe
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ..-..++.++...||.|+|||.+|-+
T Consensus       163 ~~e~~l~~~l~a~~r~Lkp~G~~iP~  188 (376)
T 4hc4_A          163 LHESMLSSVLHARTKWLKEGGLLLPA  188 (376)
T ss_dssp             TTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred             cccchhhhHHHHHHhhCCCCceECCc
Confidence            33334678999999999999998865

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.14  E-value=3.1e-06  Score=75.43  Aligned_cols=134  Identities=19%  Similarity=0.242  Sum_probs=76.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-C---eEEEEecCCCCCCChhhHHhh------Cc----cc-ccccccccCCCCCcchhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-K---VWVMNVVPIESPDTLPIIYER------GL----FG-LYHDWCESFNTYPRTYDL  135 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-~---V~vmnv~p~~~~~~l~~i~eR------GL----i~-~~~dwce~f~tyPrtyDl  135 (223)
                      -.+|||+|||.|+++..+.+. +   |+++.+.|.    .++.+.++      |+    +- ...|..+.++..+.+||+
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~----~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDv  192 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDET----VIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV  192 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHH----HHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHH----HHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceE
Confidence            378999999999999999877 2   455555433    33332221      22    11 222322222223588999


Q ss_pred             hhhhhhhccccc--ccchhHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCeeEEee------cCCCeeE
Q 027471          136 LHADHLFSTIKK--RCSLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMIY------TNDNQGM  202 (223)
Q Consensus       136 lH~~~lfs~~~~--rC~i~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~~~~~------~~~~e~~  202 (223)
                      |-++. +..+..  ...-..++.++.|+|+|||.+++...     .+....+.+.++..--.+....      ..+.-.+
T Consensus       193 Ii~d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f  271 (321)
T 2pt6_A          193 IIVDS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGI  271 (321)
T ss_dssp             EEEEC-CCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEE
T ss_pred             EEECC-cCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEE
Confidence            98753 222211  11115889999999999999999632     2333444444444433443221      1223458


Q ss_pred             EEEEecc
Q 027471          203 LCVHKTY  209 (223)
Q Consensus       203 L~~~K~~  209 (223)
                      ++|.|++
T Consensus       272 ~~as~~~  278 (321)
T 2pt6_A          272 LCCSKTD  278 (321)
T ss_dssp             EEEESST
T ss_pred             EEeeCCC
Confidence            8898874

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.14  E-value=6.5e-07  Score=80.26  Aligned_cols=122  Identities=12%  Similarity=-0.012  Sum_probs=66.0

Q ss_pred             ceEEEeeCCchHHHHHHhhCCCe--EEEEecCCCCCCChhhHHhhCcc----cccccccccCCC-C---Ccchhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYERGLF----GLYHDWCESFNT-Y---PRTYDLLHADH  140 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~V--~vmnv~p~~~~~~l~~i~eRGLi----~~~~dwce~f~t-y---PrtyDllH~~~  140 (223)
                      -.+|||+|||+|+|+.+++..+.  +.+.+++..-....+-+...|+-    -+++.-+..+.. .   ..+||+|-++-
T Consensus       154 ~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP  233 (332)
T 2igt_A          154 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP  233 (332)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred             CCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence            35799999999999999988764  33333332111111122223542    223221111111 1   35899987742


Q ss_pred             h-hccc------ccccchhHHHHhhhhcccCCcEEEEecc-------HHHHHHHHHHHHhCCCeeE
Q 027471          141 L-FSTI------KKRCSLKAVVAEVDRILRPDGNLILRDD-------AETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       141 l-fs~~------~~rC~i~~vl~E~DRILRPgG~~ii~D~-------~~~~~~i~~i~~~l~W~~~  192 (223)
                      - |...      ...-....++.++-|+|+|||.+++...       ......+++.++....++.
T Consensus       234 P~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          234 PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            2 1111      0011245889999999999999887622       1123344444556655553

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.12  E-value=2.4e-06  Score=76.18  Aligned_cols=133  Identities=16%  Similarity=0.206  Sum_probs=71.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh------Cc----ccc-cccccccCCCCCcchhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER------GL----FGL-YHDWCESFNTYPRTYDL  135 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR------GL----i~~-~~dwce~f~tyPrtyDl  135 (223)
                      -++|||+|||.|+++..|++.    .|+++.+.|.    .++.+.++      |+    +-+ ..|..+.+..-+++||+
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~----~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  184 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEM----VIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDV  184 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHH----HHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHH----HHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceE
Confidence            478999999999999999877    2444444332    33333222      32    112 22221112223578999


Q ss_pred             hhhhhhhccccc-ccch-hHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCeeEEee----cC-CCe-eE
Q 027471          136 LHADHLFSTIKK-RCSL-KAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMIY----TN-DNQ-GM  202 (223)
Q Consensus       136 lH~~~lfs~~~~-rC~i-~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~~~~~----~~-~~e-~~  202 (223)
                      |-++. +..... .-.. ..++.++.|+|||||.+++...     .+....+.+.++.+-=.+....    +- ... .+
T Consensus       185 Ii~d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~~g~  263 (314)
T 2b2c_A          185 IITDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGY  263 (314)
T ss_dssp             EEECC-C-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEE
T ss_pred             EEEcC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCcCCCceEE
Confidence            98753 332221 1111 5889999999999999999732     2233344444444332333221    11 123 68


Q ss_pred             EEEEec
Q 027471          203 LCVHKT  208 (223)
Q Consensus       203 L~~~K~  208 (223)
                      ++|.|.
T Consensus       264 ~~ask~  269 (314)
T 2b2c_A          264 LICAKN  269 (314)
T ss_dssp             EEEESS
T ss_pred             EEEeCC
Confidence            888886

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.10  E-value=4.6e-07  Score=77.84  Aligned_cols=131  Identities=11%  Similarity=0.037  Sum_probs=84.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc-ccccccccCCC-CCcchhhhhhhhhhcc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNT-YPRTYDLLHADHLFST  144 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~t-yPrtyDllH~~~lfs~  144 (223)
                      -.+|||+|||+|.+|..+...    .||...+.+..-.-..+.+..-|+-. +-+  |+.... .|.+||++=+..++++
T Consensus        50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~LHl  127 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKMLPV  127 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCHHH
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHHHh
Confidence            568999999999999999665    45666664442221222222335542 222  222222 5588999888777777


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEeccHH-----------HHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRDDAE-----------TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK  207 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~-----------~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K  207 (223)
                      ..++   +..+..+-+.|||||.||--++.+           .....+..+..=-|.+.... -+.|-+.+.+|
T Consensus       128 L~~~---~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~-~~nEl~y~~~~  197 (200)
T 3fzg_A          128 LKQQ---DVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKV-IGNELVYITSG  197 (200)
T ss_dssp             HHHT---TCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEE-ETTEEEEEECC
T ss_pred             hhhh---HHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeee-eCceEEEEEec
Confidence            7443   467779999999999999887322           34567777777777765432 24566666655

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.06  E-value=1.9e-06  Score=77.16  Aligned_cols=132  Identities=13%  Similarity=0.069  Sum_probs=74.6

Q ss_pred             eEEEeeCCchHHHHHHhhCC-CeE---EEEecCCCCCC-ChhhHHhhCccc-ccccccccCCCCC-cchhhhhhhhhhcc
Q 027471           72 RNVMDMRAVYGGFAAALKDL-KVW---VMNVVPIESPD-TLPIIYERGLFG-LYHDWCESFNTYP-RTYDLLHADHLFST  144 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~-~V~---vmnv~p~~~~~-~l~~i~eRGLi~-~~~dwce~f~tyP-rtyDllH~~~lfs~  144 (223)
                      .+|||+|||.|||.-..+++ ++-   ..-|. .+.+. .+.. ...|..- ...+=++.+. ++ ..||+|=|+...+ 
T Consensus        76 ~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVG-vDl~~~pi~~-~~~g~~ii~~~~~~dv~~-l~~~~~DlVlsD~apn-  151 (277)
T 3evf_A           76 GRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLG-RDGHEKPMNV-QSLGWNIITFKDKTDIHR-LEPVKCDTLLCDIGES-  151 (277)
T ss_dssp             EEEEEETCTTCHHHHHHHTSTTEEEEEEECCC-CTTCCCCCCC-CBTTGGGEEEECSCCTTT-SCCCCCSEEEECCCCC-
T ss_pred             CEEEEecCCCCHHHHHHHHhcCCCcceeEEEe-ccCccccccc-CcCCCCeEEEeccceehh-cCCCCccEEEecCccC-
Confidence            46999999999999977655 442   22222 12110 0000 0012100 1111111222 33 7899999987666 


Q ss_pred             ccc----ccchhHHHHhhhhcccCC-cEEEEe-------ccHHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471          145 IKK----RCSLKAVVAEVDRILRPD-GNLILR-------DDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK  207 (223)
Q Consensus       145 ~~~----rC~i~~vl~E~DRILRPg-G~~ii~-------D~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K  207 (223)
                      ...    .-....+|..+.++|+|| |.|++.       +..+.+..++..+++.+...-..-.++.|.+++|..
T Consensus       152 sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V~~~KPaSR~~S~E~Y~V~~~  226 (277)
T 3evf_A          152 SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPLSRNSTHEMYYVSGA  226 (277)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCTTSCTTCCCEEEESSC
T ss_pred             cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCEEEEeCCCCCCCCceEEEEec
Confidence            221    111124578889999999 999996       223345666766666665543112356899999976

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.05  E-value=1.4e-06  Score=78.45  Aligned_cols=97  Identities=18%  Similarity=0.215  Sum_probs=61.2

Q ss_pred             CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh------Cc----cc-ccccccccCCCCC-cch
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER------GL----FG-LYHDWCESFNTYP-RTY  133 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR------GL----i~-~~~dwce~f~tyP-rty  133 (223)
                      .-++|||+|||.|+++..|+++    .|+++.+.|.    .++++.++      |+    +- ...|..+.++.++ .+|
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~----~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~f  195 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKM----VVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY  195 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHH----HHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHH----HHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCc
Confidence            3479999999999999999887    3555555443    23322221      33    22 2333333333444 789


Q ss_pred             hhhhhhhhhcccc--cccchhHHHHhhhhcccCCcEEEEe
Q 027471          134 DLLHADHLFSTIK--KRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       134 DllH~~~lfs~~~--~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      |+|-++. +....  ..-....++.++.|+|+|||.+++.
T Consensus       196 DlIi~d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          196 DAVIVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EEEEECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEECC-CCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9998853 21111  1111358899999999999999996

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.05  E-value=2.8e-06  Score=80.32  Aligned_cols=141  Identities=10%  Similarity=0.098  Sum_probs=78.6

Q ss_pred             cCCCCccchhHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC---C-eEEEEecCCCCC---CCh--
Q 027471           37 YGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL---K-VWVMNVVPIESP---DTL--  107 (223)
Q Consensus        37 ~~~~~~~~f~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~-V~vmnv~p~~~~---~~l--  107 (223)
                      |...+.+.|.+-...   .+.+ -++.+++..+  .+|||+|||+|.++..++..   . |+.+.++|....   ...  
T Consensus       146 Ye~Fs~~vYGEt~~~---~i~~-il~~l~l~~g--d~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~  219 (438)
T 3uwp_A          146 YEPFSPEVYGETSFD---LVAQ-MIDEIKMTDD--DLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE  219 (438)
T ss_dssp             CSSSCGGGGGGTHHH---HHHH-HHHHHCCCTT--CEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             cccCCCcccCCCCHH---HHHH-HHHhcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            444455555544422   2322 3344555444  46999999999988777532   2 777777553211   011  


Q ss_pred             --hhHHhhCc----ccccccccccCCCCC-----cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHH
Q 027471          108 --PIIYERGL----FGLYHDWCESFNTYP-----RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAET  176 (223)
Q Consensus       108 --~~i~eRGL----i~~~~dwce~f~tyP-----rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~  176 (223)
                        +.+...|+    +-+++   +.|-..|     ..||+|-+...+- .   -.+...|.|+-|+|||||.||+.+...-
T Consensus       220 frkr~~~~Gl~~~rVefi~---GD~~~lp~~d~~~~aDVVf~Nn~~F-~---pdl~~aL~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          220 FRKWMKWYGKKHAEYTLER---GDFLSEEWRERIANTSVIFVNNFAF-G---PEVDHQLKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             HHHHHHHHTBCCCEEEEEE---CCTTSHHHHHHHHTCSEEEECCTTC-C---HHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred             HHHHHHHhCCCCCCeEEEE---CcccCCccccccCCccEEEEccccc-C---chHHHHHHHHHHcCCCCcEEEEeecccC
Confidence              11223355    22333   4444433     3678877654321 1   1345788999999999999999855332


Q ss_pred             ------HHHHHHHHHhCCCe
Q 027471          177 ------IVEVEDLVKSLHWD  190 (223)
Q Consensus       177 ------~~~i~~i~~~l~W~  190 (223)
                            ...++.+...+++.
T Consensus       293 ~d~~i~~rnl~di~~il~v~  312 (438)
T 3uwp_A          293 LNFRINSRNLSDIGTIMRVV  312 (438)
T ss_dssp             TTCCCCSSSTTSGGGSEEEE
T ss_pred             CCCCCCcccccChhhhheee
Confidence                  12344455555554

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.04  E-value=5.4e-06  Score=74.95  Aligned_cols=134  Identities=12%  Similarity=0.104  Sum_probs=75.2

Q ss_pred             ceEEEeeCCchHHHHHHhhC-C-C--eEEEEecCCCCCCChhhHHhh-Cc-----cccc-ccccccCCCCC-cchhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKD-L-K--VWVMNVVPIESPDTLPIIYER-GL-----FGLY-HDWCESFNTYP-RTYDLLHA  138 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~-~-~--V~vmnv~p~~~~~~l~~i~eR-GL-----i~~~-~dwce~f~tyP-rtyDllH~  138 (223)
                      -.+|||+|||.|+++++|.+ . +  |+++-+.|.    .++.+.++ ++     +-++ .|-.+-+..++ ++||+|-+
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~----vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~  165 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAE----LARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIR  165 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHH----HHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHH----HHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEE
Confidence            34899999999999999987 3 3  444444332    33333222 11     1122 22222223354 89999988


Q ss_pred             hhhhcccc--cccchhHHHHhhhhcccCCcEEEEecc--H--HHHHHH-HHHHHhCCCeeEEe-e------cCCCeeEEE
Q 027471          139 DHLFSTIK--KRCSLKAVVAEVDRILRPDGNLILRDD--A--ETIVEV-EDLVKSLHWDVRMI-Y------TNDNQGMLC  204 (223)
Q Consensus       139 ~~lfs~~~--~rC~i~~vl~E~DRILRPgG~~ii~D~--~--~~~~~i-~~i~~~l~W~~~~~-~------~~~~e~~L~  204 (223)
                      + +|....  ....-..++.++.|+|||||.+++.-.  .  +....+ +.+.+.+. .+... +      ......|++
T Consensus       166 D-~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~-~v~~~~~~~~~~g~~~gN~Vl~  243 (317)
T 3gjy_A          166 D-VFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFE-HVAVIADPPMLKGRRYGNIILM  243 (317)
T ss_dssp             C-CSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCS-EEEEEECHHHHTTSSCEEEEEE
T ss_pred             C-CCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCC-ceEEEEecCCCCCCcCceEEEE
Confidence            5 344322  111125789999999999999998622  1  222222 23333332 33322 1      123578899


Q ss_pred             EEeccc
Q 027471          205 VHKTYW  210 (223)
Q Consensus       205 ~~K~~w  210 (223)
                      |.|.-.
T Consensus       244 As~~pl  249 (317)
T 3gjy_A          244 GSDTEF  249 (317)
T ss_dssp             EESSCC
T ss_pred             EECCCC
Confidence            998755

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.04  E-value=2.2e-06  Score=75.78  Aligned_cols=134  Identities=17%  Similarity=0.169  Sum_probs=74.2

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC----eEEEEecCCCCCCChhhHHh------hCc----ccccc-cccccCCCCCcchh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK----VWVMNVVPIESPDTLPIIYE------RGL----FGLYH-DWCESFNTYPRTYD  134 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~----V~vmnv~p~~~~~~l~~i~e------RGL----i~~~~-dwce~f~tyPrtyD  134 (223)
                      .-++|||+|||.|+++..|+++.    |+++.+.|.    .++.+.+      .|+    +-++. |-.+.++..+.+||
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~----~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD  170 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDED----VIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD  170 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHH----HHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHH----HHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCce
Confidence            34789999999999999998872    455555433    2222222      233    22222 21111233458899


Q ss_pred             hhhhhhhhccccc--ccchhHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCeeEEe----ec--CCCee
Q 027471          135 LLHADHLFSTIKK--RCSLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMI----YT--NDNQG  201 (223)
Q Consensus       135 llH~~~lfs~~~~--rC~i~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~~~~----~~--~~~e~  201 (223)
                      +|-++.. .....  .-....++.++-|+|||||.+++...     .+....+.+.++.+-=.+...    .+  .+.-.
T Consensus       171 ~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g  249 (304)
T 2o07_A          171 VIITDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIG  249 (304)
T ss_dssp             EEEEECC------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEE
T ss_pred             EEEECCC-CCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCcceE
Confidence            9988532 22111  00123789999999999999999741     223344444444332233221    11  13356


Q ss_pred             EEEEEec
Q 027471          202 MLCVHKT  208 (223)
Q Consensus       202 ~L~~~K~  208 (223)
                      +++|.|.
T Consensus       250 ~~~as~~  256 (304)
T 2o07_A          250 FMLCSKN  256 (304)
T ss_dssp             EEEEESS
T ss_pred             EEEEeCC
Confidence            8889886

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.03  E-value=1.9e-06  Score=75.75  Aligned_cols=41  Identities=17%  Similarity=0.376  Sum_probs=34.3

Q ss_pred             cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          131 RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       131 rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      ..||+|-|.+++.+..+ -....++.++.|.|+|||++++..
T Consensus       212 ~~fDlI~crnvliyf~~-~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          212 GPFDAIFCRNVMIYFDK-TTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             CCEEEEEECSSGGGSCH-HHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             CCeeEEEECCchHhCCH-HHHHHHHHHHHHHhCCCcEEEEEe
Confidence            78999999988876643 234699999999999999999953

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.02  E-value=5.6e-06  Score=66.61  Aligned_cols=107  Identities=13%  Similarity=0.048  Sum_probs=64.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhC-cccccccccccCCCCCcchhhhhhhhhhcccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERG-LFGLYHDWCESFNTYPRTYDLLHADHLFSTIK  146 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRG-Li~~~~dwce~f~tyPrtyDllH~~~lfs~~~  146 (223)
                      -.+|||+|||.|.++.+|.+.+   |+.+.+.|.    .++.+.++- -+-+++   ..+..+|.+||+|-++..|.+..
T Consensus        52 ~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~----~~~~a~~~~~~~~~~~---~d~~~~~~~~D~v~~~~p~~~~~  124 (200)
T 1ne2_A           52 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPD----AIETAKRNCGGVNFMV---ADVSEISGKYDTWIMNPPFGSVV  124 (200)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHH----HHHHHHHHCTTSEEEE---CCGGGCCCCEEEEEECCCC----
T ss_pred             CCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHH----HHHHHHHhcCCCEEEE---CcHHHCCCCeeEEEECCCchhcc
Confidence            4589999999999999998773   555555433    344444331 122222   23334678999999988887765


Q ss_pred             cccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCC
Q 027471          147 KRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLH  188 (223)
Q Consensus       147 ~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~  188 (223)
                      +.. ...++.++-|+|  |+.+++. +......+.+++....
T Consensus       125 ~~~-~~~~l~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~g  162 (200)
T 1ne2_A          125 KHS-DRAFIDKAFETS--MWIYSIG-NAKARDFLRREFSARG  162 (200)
T ss_dssp             ----CHHHHHHHHHHE--EEEEEEE-EGGGHHHHHHHHHHHE
T ss_pred             Cch-hHHHHHHHHHhc--CcEEEEE-cCchHHHHHHHHHHCC
Confidence            422 236788888888  5544444 4455566777666554

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.02  E-value=1.7e-05  Score=68.75  Aligned_cols=128  Identities=12%  Similarity=0.085  Sum_probs=69.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCC---CCChhh---HHhhCcccccccccccCCCCCcchhhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIES---PDTLPI---IYERGLFGLYHDWCESFNTYPRTYDLLHADHLF  142 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~---~~~l~~---i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lf  142 (223)
                      -++|||+|||.|++++.+.+.+  |+++.+.|...   ...++.   .++..-+.++..   ....|..+||+|-++.  
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~---D~~~~~~~fD~Ii~d~--  147 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ---LLDLDIKKYDLIFCLQ--  147 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESS---GGGSCCCCEEEEEESS--
T ss_pred             CCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEec---hHHHHHhhCCEEEECC--
Confidence            4789999999999999998764  44443332211   111111   111111222221   1112337899988761  


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEeccH-----HHHHHHHHHHHhCCCeeEEeec----CCCeeEEEEEecc
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMIYT----NDNQGMLCVHKTY  209 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~-----~~~~~i~~i~~~l~W~~~~~~~----~~~e~~L~~~K~~  209 (223)
                         .+   -..++.++-|+|||||.+++....     +....+.+.++..--.+.....    .+.-.+++|.|.+
T Consensus       148 ---~d---p~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~vP~~g~~~~~~as~~~  217 (262)
T 2cmg_A          148 ---EP---DIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLRILSNKGYIYASFKT  217 (262)
T ss_dssp             ---CC---CHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEECCTTCTTCCEEEEEEESSC
T ss_pred             ---CC---hHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEEEccCCCcccEEEEeeCCC
Confidence               11   124788999999999999996221     2233333333333222222211    2345678898863

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.00  E-value=3.4e-06  Score=73.41  Aligned_cols=133  Identities=20%  Similarity=0.296  Sum_probs=73.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh------Cc----cccc-ccccccCCCCCcchhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER------GL----FGLY-HDWCESFNTYPRTYDL  135 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR------GL----i~~~-~dwce~f~tyPrtyDl  135 (223)
                      -++|||+|||.|+++..+.+.    .|+++.+.|.    .++.+.++      |+    +-++ .|..+.++..+++||+
T Consensus        79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~----~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~  154 (283)
T 2i7c_A           79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDET----VIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV  154 (283)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHH----HHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred             CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHH----HHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceE
Confidence            479999999999999999876    3455555432    22222221      11    1122 2211112223688999


Q ss_pred             hhhhhhhcccccccch--hHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCeeEEee----c--CCCeeE
Q 027471          136 LHADHLFSTIKKRCSL--KAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMIY----T--NDNQGM  202 (223)
Q Consensus       136 lH~~~lfs~~~~rC~i--~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~~~~~----~--~~~e~~  202 (223)
                      |-++. +......-.+  ..++.++.|+|||||.+++...     .+....+.+.+++.--.+....    +  .+.-.+
T Consensus       155 Ii~d~-~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~g~~g~  233 (283)
T 2i7c_A          155 IIVDS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGI  233 (283)
T ss_dssp             EEEEC-CCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEE
T ss_pred             EEEcC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCCCcEEE
Confidence            98853 2222211111  5889999999999999999732     2233333333443322332211    1  122368


Q ss_pred             EEEEec
Q 027471          203 LCVHKT  208 (223)
Q Consensus       203 L~~~K~  208 (223)
                      .+|.|.
T Consensus       234 ~~~s~~  239 (283)
T 2i7c_A          234 LCCSKT  239 (283)
T ss_dssp             EEEESS
T ss_pred             EEEeCC
Confidence            888876

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=97.99  E-value=3.9e-06  Score=72.39  Aligned_cols=128  Identities=10%  Similarity=0.053  Sum_probs=85.5

Q ss_pred             eEEEeeCCchHHHHHHhhCCC----eEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCC-c-chhhhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDLK----VWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYP-R-TYDLLHADHLF  142 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~----V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyP-r-tyDllH~~~lf  142 (223)
                      .+|+|+|||+|.++.+|++.+    |+.+.+.|..-....+-+...|+-.   +.+  +..|...| . .||+|-.++  
T Consensus        17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~--~d~l~~l~~~~~~D~IviaG--   92 (225)
T 3kr9_A           17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRL--ANGLAAFEETDQVSVITIAG--   92 (225)
T ss_dssp             EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEE--CSGGGGCCGGGCCCEEEEEE--
T ss_pred             CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEE--CchhhhcccCcCCCEEEEcC--
Confidence            579999999999999998863    6667775543333444445567643   222  22344455 3 699765431  


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEee--cCC--CeeEEEEEe
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY--TND--NQGMLCVHK  207 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~--~~~--~e~~L~~~K  207 (223)
                         .....+..+|-+.-..|+|+|++|++-. .-...+.+.+....|......  .++  --.++.+.+
T Consensus        93 ---~Gg~~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~~~  157 (225)
T 3kr9_A           93 ---MGGRLIARILEEGLGKLANVERLILQPN-NREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEA  157 (225)
T ss_dssp             ---ECHHHHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ---CChHHHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEe
Confidence               1234577999999999999999999766 457788888889999975332  112  245666665

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.98  E-value=1.9e-06  Score=77.73  Aligned_cols=123  Identities=17%  Similarity=0.104  Sum_probs=69.5

Q ss_pred             CceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc--ccccccccC-CCC---Ccchhhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESF-NTY---PRTYDLLHADHL  141 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f-~ty---PrtyDllH~~~l  141 (223)
                      .-.+|||+|||+|+|+.+++..  .|+.+.++|.......+-+...|+..  +++.-++.+ +..   +.+||+|.++--
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP  288 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  288 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence            3568999999999999988876  45555554432221222222335532  222111111 111   468999888532


Q ss_pred             hcccccc------cchhHHHHhhhhcccCCcEEEEeccHH------HHHHHHHHHHhCCCeeE
Q 027471          142 FSTIKKR------CSLKAVVAEVDRILRPDGNLILRDDAE------TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       142 fs~~~~r------C~i~~vl~E~DRILRPgG~~ii~D~~~------~~~~i~~i~~~l~W~~~  192 (223)
                      .......      -....++.++-|+|+|||.+++.....      ....+++.+.....+..
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~  351 (382)
T 1wxx_A          289 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLR  351 (382)
T ss_dssp             CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            1111000      123478999999999999999984322      23455555555554443

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.94  E-value=3e-06  Score=76.25  Aligned_cols=116  Identities=11%  Similarity=0.035  Sum_probs=71.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc--ccc-cccccccCCC-CCcchhhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL--FGL-YHDWCESFNT-YPRTYDLLHADHLF  142 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL--i~~-~~dwce~f~t-yPrtyDllH~~~lf  142 (223)
                      -.+|||+| |.|.++.+|+..    .|+.+.+.|..-....+.+.+.|+  +-+ ..|..+.++. ++.+||+|-++..|
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~  251 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE  251 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence            46899999 999999888754    355555544322112222223365  332 3343333443 34699999887666


Q ss_pred             cccccccchhHHHHhhhhcccCCc-EEEEecc-----HHHHHHHHHHHH-hCCCee
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDG-NLILRDD-----AETIVEVEDLVK-SLHWDV  191 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG-~~ii~D~-----~~~~~~i~~i~~-~l~W~~  191 (223)
                      +...    ...++.++-|+||||| .+++.-.     ......+++++. .+....
T Consensus       252 ~~~~----~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  303 (373)
T 2qm3_A          252 TLEA----IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI  303 (373)
T ss_dssp             SHHH----HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred             chHH----HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence            5432    4689999999999999 4455422     222366777766 666554

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.94  E-value=6.4e-06  Score=75.55  Aligned_cols=110  Identities=13%  Similarity=0.243  Sum_probs=65.8

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh----CcccccccccccCCC----CC-cchhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER----GLFGLYHDWCESFNT----YP-RTYDLLH  137 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR----GLi~~~~dwce~f~t----yP-rtyDllH  137 (223)
                      -.+|||+|||.|+++..|++.    .|+.+.+.+.    .++.+.++    |+.-  .-.|..+..    ++ ..||+|-
T Consensus       247 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~----~l~~~~~~~~~~g~~~--~~~~~D~~~~~~~~~~~~fD~Vl  320 (429)
T 1sqg_A          247 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQ----RLSRVYDNLKRLGMKA--TVKQGDGRYPSQWCGEQQFDRIL  320 (429)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTT----THHHHHHHHHHTTCCC--EEEECCTTCTHHHHTTCCEEEEE
T ss_pred             cCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHHHHHcCCCe--EEEeCchhhchhhcccCCCCEEE
Confidence            358999999999999888764    4666666554    33333332    6521  111223332    34 6899987


Q ss_pred             hh------hhhccccc------ccch-------hHHHHhhhhcccCCcEEEEec----cHHHHHHHHHHHHh
Q 027471          138 AD------HLFSTIKK------RCSL-------KAVVAEVDRILRPDGNLILRD----DAETIVEVEDLVKS  186 (223)
Q Consensus       138 ~~------~lfs~~~~------rC~i-------~~vl~E~DRILRPgG~~ii~D----~~~~~~~i~~i~~~  186 (223)
                      ++      +.+.+..+      ...+       ..+|.++-|+|||||.+++++    +.+....++.+++.
T Consensus       321 ~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~  392 (429)
T 1sqg_A          321 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR  392 (429)
T ss_dssp             EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             EeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHh
Confidence            53      22221110      0011       378999999999999999974    23334556666554

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.93  E-value=2.4e-06  Score=77.29  Aligned_cols=121  Identities=16%  Similarity=0.074  Sum_probs=68.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCc-cc---ccc-cccccCCCC---Ccchhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGL-FG---LYH-DWCESFNTY---PRTYDLLHAD  139 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGL-i~---~~~-dwce~f~ty---PrtyDllH~~  139 (223)
                      -.+|||+|||+|+|+.++++.+   |+.+.++|..-....+-+...|+ -.   ++. |..+.++.+   +..||+|.++
T Consensus       221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~d  300 (396)
T 3c0k_A          221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD  300 (396)
T ss_dssp             TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEEC
Confidence            3589999999999999998773   55565544322212222223355 21   222 211111111   3589999886


Q ss_pred             hhhccc------ccccchhHHHHhhhhcccCCcEEEEeccH------HHHHHHHHHHHhCCCee
Q 027471          140 HLFSTI------KKRCSLKAVVAEVDRILRPDGNLILRDDA------ETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       140 ~lfs~~------~~rC~i~~vl~E~DRILRPgG~~ii~D~~------~~~~~i~~i~~~l~W~~  191 (223)
                      --+...      ........++.++-|+|+|||.++++...      +....+++.+.....+.
T Consensus       301 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~  364 (396)
T 3c0k_A          301 PPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV  364 (396)
T ss_dssp             CSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence            322110      01133468899999999999999997432      22445555555554443

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.91  E-value=2.3e-06  Score=76.25  Aligned_cols=94  Identities=13%  Similarity=-0.003  Sum_probs=57.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcccccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKR  148 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~r  148 (223)
                      -.+|||+|||+|+|+.. ++..  |+.+.++|.......+-+...|+..-+.-.|.....++.+||+|-++.-.      
T Consensus       196 ~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~------  268 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK------  268 (336)
T ss_dssp             TCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT------
T ss_pred             CCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH------
Confidence            35899999999999999 7653  55555544322212222333455221111122333334889998875211      


Q ss_pred             cchhHHHHhhhhcccCCcEEEEec
Q 027471          149 CSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       149 C~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                       ....++.++-|+|+|||.+++.+
T Consensus       269 -~~~~~l~~~~~~L~~gG~l~~~~  291 (336)
T 2yx1_A          269 -FAHKFIDKALDIVEEGGVIHYYT  291 (336)
T ss_dssp             -TGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             -hHHHHHHHHHHHcCCCCEEEEEE
Confidence             12378889999999999998863

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.90  E-value=4e-06  Score=77.58  Aligned_cols=120  Identities=15%  Similarity=0.238  Sum_probs=69.5

Q ss_pred             cCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh----Cccc--cc-ccccccCCC-CC
Q 027471           64 MGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER----GLFG--LY-HDWCESFNT-YP  130 (223)
Q Consensus        64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR----GLi~--~~-~dwce~f~t-yP  130 (223)
                      +++..+  ..|||+|||.|+++..|++.     .|+.+.+.+.    .++.+.++    |+..  ++ .|.. .++. ++
T Consensus       255 l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~----~l~~~~~~~~~~g~~~v~~~~~D~~-~~~~~~~  327 (450)
T 2yxl_A          255 LDPKPG--ETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKM----RMKRLKDFVKRMGIKIVKPLVKDAR-KAPEIIG  327 (450)
T ss_dssp             HCCCTT--CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHH----HHHHHHHHHHHTTCCSEEEECSCTT-CCSSSSC
T ss_pred             cCCCCc--CEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHH----HHHHHHHHHHHcCCCcEEEEEcChh-hcchhhc
Confidence            344444  47999999999999888762     3555555433    33333332    6632  22 2222 2222 55


Q ss_pred             -cchhhhhhh------hhhccccc------ccch-------hHHHHhhhhcccCCcEEEEec----cHHHHHHHHHHHHh
Q 027471          131 -RTYDLLHAD------HLFSTIKK------RCSL-------KAVVAEVDRILRPDGNLILRD----DAETIVEVEDLVKS  186 (223)
Q Consensus       131 -rtyDllH~~------~lfs~~~~------rC~i-------~~vl~E~DRILRPgG~~ii~D----~~~~~~~i~~i~~~  186 (223)
                       .+||+|-++      +++....+      .-.+       ..+|.++-|+|||||.+++++    +.+....++.+++.
T Consensus       328 ~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~  407 (450)
T 2yxl_A          328 EEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNV  407 (450)
T ss_dssp             SSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence             789998853      22221110      0011       368999999999999999862    23344566666665


Q ss_pred             C-CCe
Q 027471          187 L-HWD  190 (223)
Q Consensus       187 l-~W~  190 (223)
                      . .++
T Consensus       408 ~~~~~  412 (450)
T 2yxl_A          408 HPEFK  412 (450)
T ss_dssp             CSSCE
T ss_pred             CCCCE
Confidence            4 344

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.88  E-value=3.6e-06  Score=76.04  Aligned_cols=122  Identities=13%  Similarity=0.004  Sum_probs=68.8

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCccc---ccc-cccccCCCC---Ccchhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLFG---LYH-DWCESFNTY---PRTYDLLHADH  140 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi~---~~~-dwce~f~ty---PrtyDllH~~~  140 (223)
                      -.+|||+|||+|+|+.++++.+   |+.+.++|..-....+-+...|+-.   .++ |..+.++.+   +.+||+|.++-
T Consensus       218 ~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp  297 (396)
T 2as0_A          218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP  297 (396)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence            4689999999999999998763   5556655443221222223335431   222 211111111   46899988853


Q ss_pred             hhccc-cc-----ccchhHHHHhhhhcccCCcEEEEeccH------HHHHHHHHHHHhCCCeeE
Q 027471          141 LFSTI-KK-----RCSLKAVVAEVDRILRPDGNLILRDDA------ETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       141 lfs~~-~~-----rC~i~~vl~E~DRILRPgG~~ii~D~~------~~~~~i~~i~~~l~W~~~  192 (223)
                      -+... ..     ......++.++-|+|+|||.+++....      .....+.+.+........
T Consensus       298 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  361 (396)
T 2as0_A          298 PAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLK  361 (396)
T ss_dssp             CCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            21110 00     022457899999999999999887332      123445555555544443

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.87  E-value=2.5e-06  Score=80.46  Aligned_cols=101  Identities=18%  Similarity=0.225  Sum_probs=59.2

Q ss_pred             CceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHh-hCccc--ccccccccCCC-CCcchhhhhhh-
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYE-RGLFG--LYHDWCESFNT-YPRTYDLLHAD-  139 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~e-RGLi~--~~~dwce~f~t-yPrtyDllH~~-  139 (223)
                      .-.+|||||||.|+.+..|++.     .|+.+.+.+.... .+.-..+ .|+..  +++.-...++. .+.+||.|-++ 
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~-~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~  195 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVK-VLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDA  195 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHH-HHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHH-HHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence            3458999999999998888753     3555555433222 2222222 36632  33321222333 45789998763 


Q ss_pred             -----hhhcccccc-----------c--chhHHHHhhhhcccCCcEEEEe
Q 027471          140 -----HLFSTIKKR-----------C--SLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       140 -----~lfs~~~~r-----------C--~i~~vl~E~DRILRPgG~~ii~  171 (223)
                           ++|....+.           |  .-..+|.++-|+|||||.++++
T Consensus       196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvys  245 (479)
T 2frx_A          196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYS  245 (479)
T ss_dssp             CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence                 233221110           0  0127899999999999999997

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.86  E-value=1.5e-05  Score=71.15  Aligned_cols=100  Identities=12%  Similarity=0.058  Sum_probs=58.0

Q ss_pred             CCceEEEeeCCch--HHHHH----HhhC-CCeEEEEecCCCCCCChhhHHhhC--cccccccccccCCCC---------C
Q 027471           69 SFVRNVMDMRAVY--GGFAA----ALKD-LKVWVMNVVPIESPDTLPIIYERG--LFGLYHDWCESFNTY---------P  130 (223)
Q Consensus        69 ~~iRnvLDmgaG~--GgFAA----~L~~-~~V~vmnv~p~~~~~~l~~i~eRG--Li~~~~dwce~f~ty---------P  130 (223)
                      ..+|.+||+|||.  +++-.    .+.. -.|+.+..+|..-....+...+.+  -+..++   ..+...         .
T Consensus        77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~---aD~~~~~~~l~~~~~~  153 (277)
T 3giw_A           77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVE---ADMLDPASILDAPELR  153 (277)
T ss_dssp             SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEE---CCTTCHHHHHTCHHHH
T ss_pred             cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEE---ecccChhhhhcccccc
Confidence            3589999999997  33323    2322 246666666653322222222211  111222   222221         2


Q ss_pred             cchhh-----hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          131 RTYDL-----LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       131 rtyDl-----lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ++||+     |-+..+|++..+.-....+|.++-|.|+|||+|+++
T Consensus       154 ~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls  199 (277)
T 3giw_A          154 DTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMS  199 (277)
T ss_dssp             TTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEE
T ss_pred             cccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEE
Confidence            45663     556777777766433457999999999999999998

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.81  E-value=2.9e-06  Score=80.12  Aligned_cols=117  Identities=19%  Similarity=0.207  Sum_probs=66.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcc-cccccccccCCC-CCcchhhhhhh----
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLF-GLYHDWCESFNT-YPRTYDLLHAD----  139 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi-~~~~dwce~f~t-yPrtyDllH~~----  139 (223)
                      -..|||+|||.|+.+.+|++.     .|+.+.+.+.......+.+...|+- -+++.-...++. ++.+||+|-++    
T Consensus       102 g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~PcS  181 (464)
T 3m6w_A          102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCS  181 (464)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCCC
T ss_pred             CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCCcC
Confidence            457999999999999888743     3555555443222112222223653 222211112332 46889998742    


Q ss_pred             --hhhcccccc-----------c--chhHHHHhhhhcccCCcEEEEe----ccHHHHHHHHHHHHhC
Q 027471          140 --HLFSTIKKR-----------C--SLKAVVAEVDRILRPDGNLILR----DDAETIVEVEDLVKSL  187 (223)
Q Consensus       140 --~lfs~~~~r-----------C--~i~~vl~E~DRILRPgG~~ii~----D~~~~~~~i~~i~~~l  187 (223)
                        ++|....+.           |  .-..+|.++-|+|||||.++++    ...+.-..++.+++..
T Consensus       182 g~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~  248 (464)
T 3m6w_A          182 GEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAH  248 (464)
T ss_dssp             CGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred             CccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHC
Confidence              233221110           0  0147899999999999999996    2233445566666554

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.76  E-value=5.7e-06  Score=75.21  Aligned_cols=119  Identities=15%  Similarity=0.100  Sum_probs=68.4

Q ss_pred             eEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCccc----ccc-cccccCCCC---Ccchhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLFG----LYH-DWCESFNTY---PRTYDLLHADH  140 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi~----~~~-dwce~f~ty---PrtyDllH~~~  140 (223)
                      .+|||+|||+|+|+.++++.+   |+.+.++|..-....+-+...|+-+    ++. |.-+.++..   ..+||+|-++-
T Consensus       214 ~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DP  293 (385)
T 2b78_A          214 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP  293 (385)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECC
Confidence            589999999999999998753   5666666553322222233345531    222 211111212   24899988753


Q ss_pred             hhcc-----ccc-ccchhHHHHhhhhcccCCcEEEEeccHH------HHHHHHHHHHhCCCe
Q 027471          141 LFST-----IKK-RCSLKAVVAEVDRILRPDGNLILRDDAE------TIVEVEDLVKSLHWD  190 (223)
Q Consensus       141 lfs~-----~~~-rC~i~~vl~E~DRILRPgG~~ii~D~~~------~~~~i~~i~~~l~W~  190 (223)
                      -...     ..+ ...+..++.++-|+|+|||.++++....      ....++..++....+
T Consensus       294 P~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          294 PSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             CCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred             CCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence            2211     111 1123357888899999999999984322      344555556666555

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=97.73  E-value=3.7e-06  Score=79.18  Aligned_cols=120  Identities=17%  Similarity=0.215  Sum_probs=68.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCC-CCcchhhhhhhh--
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNT-YPRTYDLLHADH--  140 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~t-yPrtyDllH~~~--  140 (223)
                      -..|||||||.|+.+.+|++.     .|+.+.+.+.......+-+...|+-.  +++.-...+.. ++.+||+|-++-  
T Consensus       106 g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPC  185 (456)
T 3m4x_A          106 GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPC  185 (456)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECCC
T ss_pred             CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCCC
Confidence            357999999999998877653     35555554432221222222346532  22221122332 468899987532  


Q ss_pred             ----hhccccc-----------cc--chhHHHHhhhhcccCCcEEEEe----ccHHHHHHHHHHHHhCCCe
Q 027471          141 ----LFSTIKK-----------RC--SLKAVVAEVDRILRPDGNLILR----DDAETIVEVEDLVKSLHWD  190 (223)
Q Consensus       141 ----lfs~~~~-----------rC--~i~~vl~E~DRILRPgG~~ii~----D~~~~~~~i~~i~~~l~W~  190 (223)
                          +|..-.+           .|  .-..+|.++-|+|||||.++++    ...+.-..|+.+++...++
T Consensus       186 Sg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~  256 (456)
T 3m4x_A          186 SGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVT  256 (456)
T ss_dssp             CCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred             CCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCE
Confidence                2221100           00  0127899999999999999996    2334455666776665433

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=97.73  E-value=2.3e-05  Score=69.30  Aligned_cols=139  Identities=12%  Similarity=0.057  Sum_probs=78.6

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC---------CeEEEEecCCCCCCChhhHHhhCccc-ccccccccCCCCC-cchhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL---------KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYP-RTYDLL  136 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~---------~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~tyP-rtyDll  136 (223)
                      .....+|||.|||+|+|+.++.++         .|..+.+.|....-...-+..+|+-. +++  +..|...+ ..||+|
T Consensus       128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~--~D~l~~~~~~~fD~I  205 (344)
T 2f8l_A          128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH--QDGLANLLVDPVDVV  205 (344)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE--SCTTSCCCCCCEEEE
T ss_pred             CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEE--CCCCCccccCCccEE
Confidence            345678999999999998877643         24444443332111111122346522 222  23455444 889999


Q ss_pred             hhhhhhcccccc-------------c-chh-HHHHhhhhcccCCcEEEEeccH-----HHHHHHHHHHHhCCCeeEEee-
Q 027471          137 HADHLFSTIKKR-------------C-SLK-AVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMIY-  195 (223)
Q Consensus       137 H~~~lfs~~~~r-------------C-~i~-~vl~E~DRILRPgG~~ii~D~~-----~~~~~i~~i~~~l~W~~~~~~-  195 (223)
                      -+.--|+.+...             . ... .++.++-+.|+|||.+++..+.     .....+.+.+..-.|-..+.. 
T Consensus       206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii~l  285 (344)
T 2f8l_A          206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKL  285 (344)
T ss_dssp             EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEEC
T ss_pred             EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEeeeC
Confidence            988777544211             0 011 4788999999999999887422     223566665544445322211 


Q ss_pred             -------cCCCeeEEEEEec
Q 027471          196 -------TNDNQGMLCVHKT  208 (223)
Q Consensus       196 -------~~~~e~~L~~~K~  208 (223)
                             +.-..-+++.+|.
T Consensus       286 p~~~F~~~~~~~~i~vl~k~  305 (344)
T 2f8l_A          286 PETLFKSEQARKSILILEKA  305 (344)
T ss_dssp             CGGGSCC-CCCEEEEEEEEC
T ss_pred             ChhhccCCCCceEEEEEECC
Confidence                   1224667777774

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=97.73  E-value=3.9e-05  Score=66.45  Aligned_cols=131  Identities=11%  Similarity=0.094  Sum_probs=85.3

Q ss_pred             eEEEeeCCchHHHHHHhhCCC----eEEEEecCCCCCCChhhHHhhCcccccccc-cccCCCC-Cc-chhhhhhhhhhcc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK----VWVMNVVPIESPDTLPIIYERGLFGLYHDW-CESFNTY-PR-TYDLLHADHLFST  144 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~----V~vmnv~p~~~~~~l~~i~eRGLi~~~~dw-ce~f~ty-Pr-tyDllH~~~lfs~  144 (223)
                      .+|+|+|||+|-++.+|++.+    |+.+.+.|.--....+-+...|+-.-+.-- +..|... |. .||+|-.++    
T Consensus        23 ~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG----   98 (230)
T 3lec_A           23 ARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG----   98 (230)
T ss_dssp             EEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE----
T ss_pred             CEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC----
Confidence            679999999999999998863    667777655333344444556763311111 1233333 33 699865431    


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEee----cCCCeeEEEEEec
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY----TNDNQGMLCVHKT  208 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~----~~~~e~~L~~~K~  208 (223)
                       .....|..+|-+.-+.|+|+|+||++-... .+.+.+.+....|......    ...--.++.+.+.
T Consensus        99 -mGg~lI~~IL~~~~~~l~~~~~lIlqp~~~-~~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~~~~  164 (230)
T 3lec_A           99 -MGGRLIADILNNDIDKLQHVKTLVLQPNNR-EDDLRKWLAANDFEIVAEDILTENDKRYEILVVKHG  164 (230)
T ss_dssp             -ECHHHHHHHHHHTGGGGTTCCEEEEEESSC-HHHHHHHHHHTTEEEEEEEEEEC--CEEEEEEEEEC
T ss_pred             -CchHHHHHHHHHHHHHhCcCCEEEEECCCC-hHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence             123456789999999999999999997543 6788888889999976332    2223456677664

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=97.70  E-value=7.8e-05  Score=66.47  Aligned_cols=108  Identities=15%  Similarity=0.237  Sum_probs=65.7

Q ss_pred             eEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCC-C-cchhhhhhhhhhcc
Q 027471           72 RNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY-P-RTYDLLHADHLFST  144 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~ty-P-rtyDllH~~~lfs~  144 (223)
                      .+|||+|||+|+|+.++.++     .|+.+.+.|....-.      .. +.+++   +.+-.+ + ..||+|-|.--|..
T Consensus        41 ~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------~~-~~~~~---~D~~~~~~~~~fD~Ii~NPPy~~  110 (421)
T 2ih2_A           41 GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------PW-AEGIL---ADFLLWEPGEAFDLILGNPPYGI  110 (421)
T ss_dssp             CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------TT-EEEEE---SCGGGCCCSSCEEEEEECCCCCC
T ss_pred             CEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------CC-CcEEe---CChhhcCccCCCCEEEECcCccC
Confidence            38999999999999998853     567777766544322      11 11222   222222 2 68999888432221


Q ss_pred             ccc------------c-------------c-chhHHHHhhhhcccCCcEEEEeccHH-----HHHHHHHHHHhCCC
Q 027471          145 IKK------------R-------------C-SLKAVVAEVDRILRPDGNLILRDDAE-----TIVEVEDLVKSLHW  189 (223)
Q Consensus       145 ~~~------------r-------------C-~i~~vl~E~DRILRPgG~~ii~D~~~-----~~~~i~~i~~~l~W  189 (223)
                      ...            +             - ....++..+-|+|+|||.+++--+..     ...++.+.+..-++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~  186 (421)
T 2ih2_A          111 VGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK  186 (421)
T ss_dssp             BSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred             cccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence            111            0             0 11266888999999999998864433     34567776555566

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=97.68  E-value=4.1e-05  Score=66.86  Aligned_cols=131  Identities=10%  Similarity=0.063  Sum_probs=83.7

Q ss_pred             eEEEeeCCchHHHHHHhhCCC----eEEEEecCCCCCCChhhHHhhCccccccc-ccccCCCCC-c-chhhhhhhhhhcc
Q 027471           72 RNVMDMRAVYGGFAAALKDLK----VWVMNVVPIESPDTLPIIYERGLFGLYHD-WCESFNTYP-R-TYDLLHADHLFST  144 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~----V~vmnv~p~~~~~~l~~i~eRGLi~~~~d-wce~f~tyP-r-tyDllH~~~lfs~  144 (223)
                      -+|+|+|||+|-++.+|++.+    |+.+.+.|.--....+-+...|+-..+.- -+..|...+ . .||+|-..+    
T Consensus        23 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag----   98 (244)
T 3gnl_A           23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG----   98 (244)
T ss_dssp             EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE----
T ss_pred             CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC----
Confidence            579999999999999998863    66677765533323333444577431111 112344333 4 599765431    


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEe----ecCCCeeEEEEEec
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMI----YTNDNQGMLCVHKT  208 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~----~~~~~e~~L~~~K~  208 (223)
                       .....+..+|-+.-+.|+|+|+||++-.. -.+.+.+.+....|.+...    +...--.+|.+.+.
T Consensus        99 -mGg~lI~~IL~~~~~~L~~~~~lIlq~~~-~~~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~~~~  164 (244)
T 3gnl_A           99 -MGGTLIRTILEEGAAKLAGVTKLILQPNI-AAWQLREWSEQNNWLITSEAILREDNKVYEIMVLAPS  164 (244)
T ss_dssp             -ECHHHHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHHHTEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             -CchHHHHHHHHHHHHHhCCCCEEEEEcCC-ChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence             12345678999999999999999999653 4677888888889987422    12223456666653

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.67  E-value=1.6e-05  Score=70.31  Aligned_cols=134  Identities=13%  Similarity=0.091  Sum_probs=77.9

Q ss_pred             chhHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHH-hhCccccc
Q 027471           44 DFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIY-ERGLFGLY  119 (223)
Q Consensus        44 ~f~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~-eRGLi~~~  119 (223)
                      .|..+....++++.+ +     ++.  -..||||+||+|+||-.++.+   .|+...+.|..-. .++.+. .-|+-..+
T Consensus       107 ~f~~~~~~er~ri~~-~-----~~~--g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~-~~~~N~~~N~v~~~v  177 (278)
T 3k6r_A          107 MFSPANVKERVRMAK-V-----AKP--DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFK-FLVENIHLNKVEDRM  177 (278)
T ss_dssp             CCCGGGHHHHHHHHH-H-----CCT--TCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHH-HHHHHHHHTTCTTTE
T ss_pred             EEcCCcHHHHHHHHH-h-----cCC--CCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHH-HHHHHHHHcCCCCcE
Confidence            355555555556554 2     223  357999999999998766554   4555555443222 222222 23553322


Q ss_pred             ccccccCCCCC--cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc-------HHHHHHHHHHHHhCCCe
Q 027471          120 HDWCESFNTYP--RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD-------AETIVEVEDLVKSLHWD  190 (223)
Q Consensus       120 ~dwce~f~tyP--rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~-------~~~~~~i~~i~~~l~W~  190 (223)
                      .-.|+....++  ..||.|-+....+       ....|-+.-++|+|||++.+-+.       ....+.++++++...++
T Consensus       178 ~~~~~D~~~~~~~~~~D~Vi~~~p~~-------~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~  250 (278)
T 3k6r_A          178 SAYNMDNRDFPGENIADRILMGYVVR-------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYD  250 (278)
T ss_dssp             EEECSCTTTCCCCSCEEEEEECCCSS-------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCE
T ss_pred             EEEeCcHHHhccccCCCEEEECCCCc-------HHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCc
Confidence            22223333343  7788766542222       23566677799999999876421       22357788888888888


Q ss_pred             eEE
Q 027471          191 VRM  193 (223)
Q Consensus       191 ~~~  193 (223)
                      +..
T Consensus       251 v~~  253 (278)
T 3k6r_A          251 VEK  253 (278)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            753

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=97.65  E-value=3.5e-06  Score=73.41  Aligned_cols=100  Identities=13%  Similarity=0.121  Sum_probs=52.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhc----
Q 027471           71 VRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFS----  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs----  143 (223)
                      -.+|||+|||.|.++.+|+++  .|+++.+.+.......+...+.|+..-+.=-|..+..++ .+||+|-|...++    
T Consensus        29 ~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD~vv~nlpy~~~~~  108 (285)
T 1zq9_A           29 TDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSP  108 (285)
T ss_dssp             TCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEEECCGGGHHH
T ss_pred             CCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhcEEEEecCcccchH
Confidence            458999999999999999876  466666644322211111222233111111123333333 4789888753222    


Q ss_pred             -------cccc-ccchhHHHHhh--hhcccCCcEEEE
Q 027471          144 -------TIKK-RCSLKAVVAEV--DRILRPDGNLIL  170 (223)
Q Consensus       144 -------~~~~-rC~i~~vl~E~--DRILRPgG~~ii  170 (223)
                             +... +..+..+=.|+  .|+|+|||.++.
T Consensus       109 ~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~  145 (285)
T 1zq9_A          109 FVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC  145 (285)
T ss_dssp             HHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred             HHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence                   1111 00000111355  379999998753

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.62  E-value=2.8e-05  Score=70.17  Aligned_cols=121  Identities=9%  Similarity=0.080  Sum_probs=74.0

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcc---cccccccccCCCCCcchhhhhhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLF---GLYHDWCESFNTYPRTYDLLHADH  140 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi---~~~~dwce~f~tyPrtyDllH~~~  140 (223)
                      +..-..|||+|||+|+++..++..    .|+.+.+.|.......+-+...|+-   -+.+.-...++..+.+||+|-|+-
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL  294 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence            334568999999999999888765    4666777655433233344455762   233321222332338999999975


Q ss_pred             hhcccc-cc----cchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE
Q 027471          141 LFSTIK-KR----CSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       141 lfs~~~-~r----C~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~  192 (223)
                      -|..-. ..    .....++.++-|+| +|+.++++...+.   +++.+....|+..
T Consensus       295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~~~~~---~~~~~~~~G~~~~  347 (373)
T 3tm4_A          295 PYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITTEKKA---IEEAIAENGFEII  347 (373)
T ss_dssp             CCC------CCHHHHHHHHHHHHHHHE-EEEEEEEESCHHH---HHHHHHHTTEEEE
T ss_pred             CCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEECCHHH---HHHHHHHcCCEEE
Confidence            554321 11    11257889999999 6666666665544   4456777888764

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=97.56  E-value=3.4e-05  Score=71.54  Aligned_cols=98  Identities=15%  Similarity=0.091  Sum_probs=59.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhccccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKK  147 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~~  147 (223)
                      -.+|||+|||+|.|+..|++.  .|+.+.+++.......+-+...|+-  +.-.|..+..++ .+||+|-++--      
T Consensus       291 ~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~~~fD~Vv~dPP------  362 (425)
T 2jjq_A          291 GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSVKGFDTVIVDPP------  362 (425)
T ss_dssp             SSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCCTTCSEEEECCC------
T ss_pred             CCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCccCCCEEEEcCC------
Confidence            458999999999999999877  4566666544322222222334552  221223333333 58998877522      


Q ss_pred             ccchh-HHHHhhhhcccCCcEEEEeccHHHH
Q 027471          148 RCSLK-AVVAEVDRILRPDGNLILRDDAETI  177 (223)
Q Consensus       148 rC~i~-~vl~E~DRILRPgG~~ii~D~~~~~  177 (223)
                      |..+. .++..+ +.|+|||.++++-....+
T Consensus       363 r~g~~~~~~~~l-~~l~p~givyvsc~p~tl  392 (425)
T 2jjq_A          363 RAGLHPRLVKRL-NREKPGVIVYVSCNPETF  392 (425)
T ss_dssp             TTCSCHHHHHHH-HHHCCSEEEEEESCHHHH
T ss_pred             ccchHHHHHHHH-HhcCCCcEEEEECChHHH
Confidence            22223 345455 459999999999777664

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.50  E-value=9.7e-06  Score=79.69  Aligned_cols=104  Identities=14%  Similarity=0.168  Sum_probs=62.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCcc----ccc-ccccccCCCCCcchhhhhhhhh-
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLF----GLY-HDWCESFNTYPRTYDLLHADHL-  141 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi----~~~-~dwce~f~tyPrtyDllH~~~l-  141 (223)
                      -.+|||+|||+|+|+-+++..+   |+.+.++|..-....+-+..-|+-    -.+ .|..+.++....+||+|-++-- 
T Consensus       540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~  619 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPT  619 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCS
T ss_pred             CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCcc
Confidence            3589999999999998887653   666666554322122222233553    122 2221112223478999887532 


Q ss_pred             hccc-------ccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          142 FSTI-------KKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       142 fs~~-------~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      |+..       ........++.++-|+|+|||.++++...
T Consensus       620 f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          620 FSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             BC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            2211       11123457899999999999999998554

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.43  E-value=0.0006  Score=62.69  Aligned_cols=115  Identities=16%  Similarity=0.186  Sum_probs=68.0

Q ss_pred             ceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcc--c-ccccccccCCC--CC-cchhhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLF--G-LYHDWCESFNT--YP-RTYDLLHADHLF  142 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi--~-~~~dwce~f~t--yP-rtyDllH~~~lf  142 (223)
                      -.+|||+|||.|.|+.+|+++  .|+.+.+++..-....+-+...|+-  - ...|+.+.++.  ++ .+||+|-++   
T Consensus       287 ~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d---  363 (433)
T 1uwv_A          287 EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD---  363 (433)
T ss_dssp             TCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC---
T ss_pred             CCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC---
Confidence            357999999999999999987  4555665544222122222334542  2 23344343433  23 689998775   


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~  192 (223)
                         .++-....++..+.+ ++|++.++++-+...+.+--.++..-.|...
T Consensus       364 ---PPr~g~~~~~~~l~~-~~p~~ivyvsc~p~tlard~~~l~~~Gy~~~  409 (433)
T 1uwv_A          364 ---PARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAGYTIA  409 (433)
T ss_dssp             ---CCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred             ---CCCccHHHHHHHHHh-cCCCeEEEEECChHHHHhhHHHHHHCCcEEE
Confidence               122222344444433 7899999999888876544444444456653

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=97.40  E-value=4.3e-05  Score=67.04  Aligned_cols=90  Identities=12%  Similarity=0.165  Sum_probs=50.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHh----hCcccccccccccCCCCC-cchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYE----RGLFGLYHDWCESFNTYP-RTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~e----RGLi~~~~dwce~f~tyP-rtyDllH~~~lfs  143 (223)
                      -.+|||+|||.|.++..|++++  |+.+.+.+.    .++.+.+    .|+.. +.=-|..+..+| .+||+|-|+-.+.
T Consensus        43 ~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~----~~~~a~~~~~~~~~~~-v~~~~~D~~~~~~~~~D~Vv~n~py~  117 (299)
T 2h1r_A           43 SDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSR----MISEVKKRCLYEGYNN-LEVYEGDAIKTVFPKFDVCTANIPYK  117 (299)
T ss_dssp             TCEEEEECCTTSTTHHHHTTTSSEEEEECSCHH----HHHHHHHHHHHTTCCC-EEC----CCSSCCCCCSEEEEECCGG
T ss_pred             cCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHH----HHHHHHHHHHHcCCCc-eEEEECchhhCCcccCCEEEEcCCcc
Confidence            4589999999999999999884  444444333    3333322    35422 111123444444 6899987753333


Q ss_pred             ccccccchhHHH---------------HhhhhcccCCcE
Q 027471          144 TIKKRCSLKAVV---------------AEVDRILRPDGN  167 (223)
Q Consensus       144 ~~~~rC~i~~vl---------------~E~DRILRPgG~  167 (223)
                      ...+  .+..++               .+.+|++.|+|.
T Consensus       118 ~~~~--~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~  154 (299)
T 2h1r_A          118 ISSP--LIFKLISHRPLFKCAVLMFQKEFAERMLANVGD  154 (299)
T ss_dssp             GHHH--HHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred             cccH--HHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence            2111  111222               447899999885

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.39  E-value=6.3e-05  Score=69.31  Aligned_cols=43  Identities=19%  Similarity=0.365  Sum_probs=33.7

Q ss_pred             CC-cchhhhhhhhhhccccc-cc----------------------------------chhHHHHhhhhcccCCcEEEEe
Q 027471          129 YP-RTYDLLHADHLFSTIKK-RC----------------------------------SLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       129 yP-rtyDllH~~~lfs~~~~-rC----------------------------------~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      || +|||++|++..|+-..+ .+                                  .+..+|....|.|+|||.++++
T Consensus       146 fP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~  224 (374)
T 3b5i_A          146 FPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLV  224 (374)
T ss_dssp             SCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            77 99999999988875442 12                                  2234688889999999999997

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.38  E-value=0.00011  Score=66.47  Aligned_cols=135  Identities=13%  Similarity=0.079  Sum_probs=75.2

Q ss_pred             CceEEEeeCCchHHHHHHhhCC-CeEE---EEecCCC--CCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL-KVWV---MNVVPIE--SPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~-~V~v---mnv~p~~--~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      ..++|||+||+.|||.-.+.++ +|.-   +.+....  .|...+. +.--++ ...+=++.+..-+..+|+|=|+...+
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~-~~~~iv-~~~~~~di~~l~~~~~DlVlsD~APn  158 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQT-LGWNIV-KFKDKSNVFTMPTEPSDTLLCDIGES  158 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCB-TTGGGE-EEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccc-cCCceE-EeecCceeeecCCCCcCEEeecCcCC
Confidence            4689999999999999999986 5432   2222110  1110000 000011 11111122221237899999887766


Q ss_pred             ccccc----cchhHHHHhhhhcccCC-cEEEEe-------ccHHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471          144 TIKKR----CSLKAVVAEVDRILRPD-GNLILR-------DDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK  207 (223)
Q Consensus       144 ~~~~r----C~i~~vl~E~DRILRPg-G~~ii~-------D~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K  207 (223)
                       ...+    -....+|.=+.++|+|| |.|++-       +..+.+..++..+++.+...-..-.++.|.|++|..
T Consensus       159 -sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~~V~~~KPaSR~~S~E~Y~V~~~  233 (300)
T 3eld_A          159 -SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVPFSRNSTHEMYYISGA  233 (300)
T ss_dssp             -CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHCCEEECCTTSCTTCCCEEEESSC
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCCcEEEEeCCCCCCChHHeeeccC
Confidence             3221    01113333347899999 999986       233456677777776665543112356899999876

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.33  E-value=8.2e-05  Score=66.79  Aligned_cols=133  Identities=12%  Similarity=0.010  Sum_probs=73.0

Q ss_pred             eEEEeeCCchHHHHHHhhC-CCeE---EEEecCCCCCC-ChhhHHhhCcc-cccccccccCCCCC-cchhhhhhhhhhcc
Q 027471           72 RNVMDMRAVYGGFAAALKD-LKVW---VMNVVPIESPD-TLPIIYERGLF-GLYHDWCESFNTYP-RTYDLLHADHLFST  144 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~-~~V~---vmnv~p~~~~~-~l~~i~eRGLi-~~~~dwce~f~tyP-rtyDllH~~~lfs~  144 (223)
                      .+|||+|||.|||..+..+ .++-   .+.+.. +.+. .+++. .-|-- -...+=++.+ .++ ..+|+|=|+...+ 
T Consensus        92 ~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~-d~~~~pi~~~-~~g~~ii~~~~~~dv~-~l~~~~~DvVLSDmApn-  167 (282)
T 3gcz_A           92 GIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGV-QGHEKPIMRT-TLGWNLIRFKDKTDVF-NMEVIPGDTLLCDIGES-  167 (282)
T ss_dssp             EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC-TTSCCCCCCC-BTTGGGEEEECSCCGG-GSCCCCCSEEEECCCCC-
T ss_pred             CEEEEeCCCCCHHHHHHHHhcCCCeeeeEEecc-Cccccccccc-cCCCceEEeeCCcchh-hcCCCCcCEEEecCccC-
Confidence            4799999999999997664 3543   222211 1110 11000 00100 0111111112 234 8899999988777 


Q ss_pred             cccc----cchhHHHHhhhhcccCC--cEEEEe-------ccHHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEec
Q 027471          145 IKKR----CSLKAVVAEVDRILRPD--GNLILR-------DDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT  208 (223)
Q Consensus       145 ~~~r----C~i~~vl~E~DRILRPg--G~~ii~-------D~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K~  208 (223)
                      ...+    -....+|.=+.++|+||  |.|++-       +..+.+..++..+++.+...-..-.++.|.+++|..+
T Consensus       168 sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V~~~KPaSR~~S~E~Y~V~~~r  244 (282)
T 3gcz_A          168 SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGLVRVPLSRNSTHEMYWVSGTR  244 (282)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCTTSCTTCCCEEEETTCC
T ss_pred             CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCEEEEcCCCcccCcceeEEEecC
Confidence            3221    11113444447899999  999986       2234456677777766655431123568999999763

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=97.25  E-value=7.2e-06  Score=69.16  Aligned_cols=32  Identities=13%  Similarity=0.152  Sum_probs=24.3

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCC
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIE  102 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~  102 (223)
                      -.+|||+|||.|.++..|++++  |+.+.+.+..
T Consensus        30 ~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~   63 (245)
T 1yub_A           30 TDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHL   63 (245)
T ss_dssp             SEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSS
T ss_pred             CCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHH
Confidence            4689999999999999998764  4555554443

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.19  E-value=0.0003  Score=63.15  Aligned_cols=134  Identities=9%  Similarity=0.015  Sum_probs=79.8

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh-CcccccccccccCC-CCCcchhhhhhhhhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFN-TYPRTYDLLHADHLF  142 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f~-tyPrtyDllH~~~lf  142 (223)
                      +.-.+|||+|||+|-||..+...    .||.+.+.+..-. ..+.++.+ |+...+. +++-.. ..|..||++=+.-+.
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le-~a~~~l~~~g~~~~~~-v~D~~~~~p~~~~DvaL~lkti  208 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVG-FVDEALTRLNVPHRTN-VADLLEDRLDEPADVTLLLKTL  208 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHH-HHHHHHHHTTCCEEEE-ECCTTTSCCCSCCSEEEETTCH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHH-HHHHHHHhcCCCceEE-EeeecccCCCCCcchHHHHHHH
Confidence            44789999999999999999666    6888888544222 22222233 6654221 222222 245888886444333


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEecc---------H--HHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRDD---------A--ETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK  207 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D~---------~--~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K  207 (223)
                      .+..+.-  ....+++=..|+|+|.||--++         +  .+....+..+..--|.+... .-..|-+.+.+|
T Consensus       209 ~~Le~q~--kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~-~~~nEl~y~i~k  281 (281)
T 3lcv_B          209 PCLETQQ--RGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRL-EIGNELIYVIQK  281 (281)
T ss_dssp             HHHHHHS--TTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEE-EETTEEEEEEC-
T ss_pred             HHhhhhh--hHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeee-eecCeeEEEecC
Confidence            3332210  1344488888999999998877         1  13466777777677765432 224566666554

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.07  E-value=0.00063  Score=62.52  Aligned_cols=121  Identities=14%  Similarity=0.136  Sum_probs=69.9

Q ss_pred             CceEEEeeCCchHHHHHHhhC-----------------CCeEEEEecCCCCCCChhhHHhhCcc----cccccccccCCC
Q 027471           70 FVRNVMDMRAVYGGFAAALKD-----------------LKVWVMNVVPIESPDTLPIIYERGLF----GLYHDWCESFNT  128 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~-----------------~~V~vmnv~p~~~~~~l~~i~eRGLi----~~~~dwce~f~t  128 (223)
                      .-.+|+|.+||+|+|..++.+                 ..+..+-+.|....-...-...+|+-    .+++  +..+..
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~--gD~l~~  248 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVC--EDSLEK  248 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEE--CCTTTS
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEee--CCCCCC
Confidence            345799999999999877653                 34566655443111111112335652    1222  234443


Q ss_pred             C-Ccchhhhhhhhhhccccccc------c--------hhHHHHhhhhcccCCcEEEEeccHHH------HHHHHH-HHHh
Q 027471          129 Y-PRTYDLLHADHLFSTIKKRC------S--------LKAVVAEVDRILRPDGNLILRDDAET------IVEVED-LVKS  186 (223)
Q Consensus       129 y-PrtyDllH~~~lfs~~~~rC------~--------i~~vl~E~DRILRPgG~~ii~D~~~~------~~~i~~-i~~~  186 (223)
                      - ...||+|-+.--|+.....-      .        -..++..+-|+|+|||.+.+--+...      -.++.+ |++.
T Consensus       249 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~~~  328 (445)
T 2okc_A          249 EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQD  328 (445)
T ss_dssp             CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHH
T ss_pred             cccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHHHhc
Confidence            2 25899998887776532210      0        02678889999999999977644332      234554 5666


Q ss_pred             CCCeeE
Q 027471          187 LHWDVR  192 (223)
Q Consensus       187 l~W~~~  192 (223)
                      ...+..
T Consensus       329 ~~l~~i  334 (445)
T 2okc_A          329 FNLHTI  334 (445)
T ss_dssp             EEEEEE
T ss_pred             CcEEEE
Confidence            555544

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.03  E-value=0.00091  Score=59.20  Aligned_cols=135  Identities=10%  Similarity=-0.041  Sum_probs=79.5

Q ss_pred             CCceEEEeeCCchHHHHHHhh-CCCeEEEEecCCCCCCChhhHHhh-CcccccccccccCC-CCCcchhhhhhhhhhccc
Q 027471           69 SFVRNVMDMRAVYGGFAAALK-DLKVWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFN-TYPRTYDLLHADHLFSTI  145 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~-~~~V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f~-tyPrtyDllH~~~lfs~~  145 (223)
                      +.-.+|||+|||+|-||.++. ...++.+.+.+..-. .++.+..+ |... --..|+... ..|.+||++=+.-+.++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~-~ar~~~~~~g~~~-~~~v~D~~~~~~~~~~DvvLllk~lh~L  181 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGD-VITPFAREKDWDF-TFALQDVLCAPPAEAGDLALIFKLLPLL  181 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHH-HHHHHHHHTTCEE-EEEECCTTTSCCCCBCSEEEEESCHHHH
T ss_pred             CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHH-HHHHHHHhcCCCc-eEEEeecccCCCCCCcchHHHHHHHHHh
Confidence            668899999999999999877 336888888655222 22223333 4322 222333443 366899997554333322


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEEeccHH-----------HHHHHHHHHHhCCCeeEEeecCCCeeEEEEEec
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLILRDDAE-----------TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT  208 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~~~-----------~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K~  208 (223)
                      .+.-  ....+++=.-|+|+|.||--++.+           ....++..+..--|.+... .-+.|-+.+.+|.
T Consensus       182 E~q~--~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~-~~~nEl~~~i~~~  252 (253)
T 3frh_A          182 EREQ--AGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKK-TIGTELIYLIKKN  252 (253)
T ss_dssp             HHHS--TTHHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEE-EETTEEEEEEEEC
T ss_pred             hhhc--hhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhhe-ecCceEEEEEecC
Confidence            2110  122334445899999988876322           2355666666677766533 2256778777773

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=97.01  E-value=0.00028  Score=59.86  Aligned_cols=28  Identities=18%  Similarity=0.268  Sum_probs=22.3

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEe
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNV   98 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv   98 (223)
                      -.+|||+|||+|.++..|++++  |+.+.+
T Consensus        31 ~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~   60 (244)
T 1qam_A           31 HDNIFEIGSGKGHFTLELVQRCNFVTAIEI   60 (244)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSSEEEEECS
T ss_pred             CCEEEEEeCCchHHHHHHHHcCCeEEEEEC
Confidence            4589999999999999998874  444444

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=96.90  E-value=9.1e-05  Score=70.44  Aligned_cols=98  Identities=15%  Similarity=0.127  Sum_probs=57.5

Q ss_pred             eEEEeeCCchHHHHHHhhCCCeEEE--EecCCCCCCChhhHHhhCccc-cc-ccccccCC-CC-Ccchhhhhhhhhhccc
Q 027471           72 RNVMDMRAVYGGFAAALKDLKVWVM--NVVPIESPDTLPIIYERGLFG-LY-HDWCESFN-TY-PRTYDLLHADHLFSTI  145 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~V~vm--nv~p~~~~~~l~~i~eRGLi~-~~-~dwce~f~-ty-PrtyDllH~~~lfs~~  145 (223)
                      -+|||+|||.|-++..|+.+|..|.  .+++..-.-...-+.++|... -| +.-.|.+. .+ ++.||+|-|..+|.|.
T Consensus        68 ~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv  147 (569)
T 4azs_A           68 LNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHI  147 (569)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHHH
T ss_pred             CeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchhcC
Confidence            3799999999999999999976554  443331111122234567532 12 22122331 24 4899999999999987


Q ss_pred             ccccchhHHHHhhhhcccCCcEEEE
Q 027471          146 KKRCSLKAVVAEVDRILRPDGNLIL  170 (223)
Q Consensus       146 ~~rC~i~~vl~E~DRILRPgG~~ii  170 (223)
                      .+-..+ .-+..+=+-|+++|..++
T Consensus       148 ~~~~~~-~~~~~~~~tl~~~~~~~~  171 (569)
T 4azs_A          148 VHLHGI-DEVKRLLSRLADVTQAVI  171 (569)
T ss_dssp             HHHHCH-HHHHHHHHHHHHHSSEEE
T ss_pred             CCHHHH-HHHHHHHHHhccccceee
Confidence            653211 122334455666665554

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=96.87  E-value=8.9e-05  Score=67.79  Aligned_cols=93  Identities=15%  Similarity=0.091  Sum_probs=57.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh----------------Cc--ccccc-cccccCC
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER----------------GL--FGLYH-DWCESFN  127 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR----------------GL--i~~~~-dwce~f~  127 (223)
                      -.+|||++||+|.++-.++++    .|+...+.|.... ..+.+.++                |+  +-+++ |..+.+.
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~-~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYE-LMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHH-HHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHH-HHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            357999999999998887664    3555555443221 22222222                54  22333 2211112


Q ss_pred             CCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          128 TYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       128 tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ..++.||+|.++       .-|....++-..-|.|||||.++++
T Consensus       127 ~~~~~fD~I~lD-------P~~~~~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          127 ERHRYFHFIDLD-------PFGSPMEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             HSTTCEEEEEEC-------CSSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             hccCCCCEEEeC-------CCCCHHHHHHHHHHhcCCCCEEEEE
Confidence            234679998876       2344567888888999999999887

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.52  E-value=0.0011  Score=61.29  Aligned_cols=20  Identities=15%  Similarity=0.014  Sum_probs=16.3

Q ss_pred             ceEEEeeCCchHHHHHHhhC
Q 027471           71 VRNVMDMRAVYGGFAAALKD   90 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~   90 (223)
                      .-+|+|+||+.|..+..+.+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~   72 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVR   72 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHH
T ss_pred             ceEEEecCCCCCchHHHHHH
Confidence            67799999999988776543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=96.33  E-value=0.0019  Score=63.51  Aligned_cols=125  Identities=18%  Similarity=0.182  Sum_probs=73.7

Q ss_pred             CCccchhHhhhhHHH---HHhhhhh-hccC--CCCCCceEEEeeCCchHHH------HHHhhCCC--eEEEEecCCCCCC
Q 027471           40 AAPEDFTADYQHWKN---VVSKSYL-NGMG--INWSFVRNVMDMRAVYGGF------AAALKDLK--VWVMNVVPIESPD  105 (223)
Q Consensus        40 ~~~~~f~~D~~~W~~---~v~~~Y~-~~l~--i~~~~iRnvLDmgaG~GgF------AA~L~~~~--V~vmnv~p~~~~~  105 (223)
                      .+.|.|++|.-+-..   -+.+ .+ +...  -+..+.-.|||+|||.|-.      |++-..++  |+++=-.| .+.-
T Consensus       322 ~tYevFEkD~vKy~~Ye~AI~~-Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~  399 (637)
T 4gqb_A          322 QTYEVFEKDPIKYSQYQQAIYK-CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVV  399 (637)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH-HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHH
T ss_pred             hhhhhhcCChhhHHHHHHHHHH-HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHH
Confidence            468899999866533   3332 22 2221  1234567899999999954      44444443  45543333 2334


Q ss_pred             ChhhHHhhCccc---ccccccccCCC--CCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEE
Q 027471          106 TLPIIYERGLFG---LYHDWCESFNT--YPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLIL  170 (223)
Q Consensus       106 ~l~~i~eRGLi~---~~~dwce~f~t--yPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii  170 (223)
                      +++.+.+.|+-.   +++   +....  -|.-.|+|=+- ++...-....+..+|.=.||.|||||.+|=
T Consensus       400 a~~~v~~N~~~dkVtVI~---gd~eev~LPEKVDIIVSE-wMG~fLl~E~mlevL~Ardr~LKPgGimiP  465 (637)
T 4gqb_A          400 TLENWQFEEWGSQVTVVS---SDMREWVAPEKADIIVSE-LLGSFADNELSPECLDGAQHFLKDDGVSIP  465 (637)
T ss_dssp             HHHHHHHHTTGGGEEEEE---SCTTTCCCSSCEEEEECC-CCBTTBGGGCHHHHHHHHGGGEEEEEEEES
T ss_pred             HHHHHHhccCCCeEEEEe---CcceeccCCcccCEEEEE-cCcccccccCCHHHHHHHHHhcCCCcEEcc
Confidence            888888888844   555   34444  56778887662 111111122344667778999999998763

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.25  E-value=0.02  Score=50.70  Aligned_cols=120  Identities=15%  Similarity=0.171  Sum_probs=76.1

Q ss_pred             CCceEEEeeCCchHHHHHHhh---------CCCeEEEEecC---CCCCC-----------------------ChhhHHhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALK---------DLKVWVMNVVP---IESPD-----------------------TLPIIYER  113 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~---------~~~V~vmnv~p---~~~~~-----------------------~l~~i~eR  113 (223)
                      +.-.+||.+|+..|..+..|+         ++.|+++....   ....+                       ..+.+..-
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            345689999999999776653         56788887532   11110                       12333334


Q ss_pred             Cc----ccccc-cccccCCCCC-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH---HHHHHHHHHH
Q 027471          114 GL----FGLYH-DWCESFNTYP-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA---ETIVEVEDLV  184 (223)
Q Consensus       114 GL----i~~~~-dwce~f~tyP-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~---~~~~~i~~i~  184 (223)
                      |+    +-++. +-.|.++..+ .+||+||.+.=  .+.   .....|..+-+.|+|||+++++|-.   .....+.++.
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD--~y~---~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~  259 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD--LYE---STWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYR  259 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC--SHH---HHHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHH
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC--ccc---cHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            55    22333 3345677776 89999999721  111   1236677788999999999999852   2445677777


Q ss_pred             HhCCCeeEE
Q 027471          185 KSLHWDVRM  193 (223)
Q Consensus       185 ~~l~W~~~~  193 (223)
                      +...+...+
T Consensus       260 ~~~~i~~~i  268 (282)
T 2wk1_A          260 AKFDIADEL  268 (282)
T ss_dssp             HHTTCCSCC
T ss_pred             HhcCCceEE
Confidence            777776543

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=96.16  E-value=0.00059  Score=63.05  Aligned_cols=93  Identities=11%  Similarity=0.022  Sum_probs=57.2

Q ss_pred             ceEEEeeCCchHHHHHHhhC--CC---eEEEEecCCCCCCChhhHHhh-Cccc----ccc-cccccCC-CCCcchhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKD--LK---VWVMNVVPIESPDTLPIIYER-GLFG----LYH-DWCESFN-TYPRTYDLLHA  138 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~--~~---V~vmnv~p~~~~~~l~~i~eR-GLi~----~~~-dwce~f~-tyPrtyDllH~  138 (223)
                      -.+|||++||+|+|+-.++.  ++   |+.+.+.|.-.. .++.+.++ |+-.    +++ |-.+.+. .++..||+|-+
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~-~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIE-IMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHH-HHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHH-HHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            36799999999999988776  34   444444333221 23333333 4422    222 2111222 34567999988


Q ss_pred             hhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          139 DHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       139 ~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      +-       -|....++...-+.|+|||.++++
T Consensus       132 DP-------~g~~~~~l~~a~~~Lk~gGll~~t  157 (392)
T 3axs_A          132 DP-------FGTPVPFIESVALSMKRGGILSLT  157 (392)
T ss_dssp             CC-------SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CC-------CcCHHHHHHHHHHHhCCCCEEEEE
Confidence            73       243457888888999999999997

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=96.02  E-value=0.0036  Score=56.10  Aligned_cols=30  Identities=17%  Similarity=0.309  Sum_probs=22.7

Q ss_pred             eEEEeeCCchHHHHHHhhCC--CeEEEEecCC
Q 027471           72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPI  101 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~  101 (223)
                      ..|||++||+|+|+.+|++.  .|+.+.++|.
T Consensus       215 ~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~  246 (369)
T 3bt7_A          215 GDLLELYCGNGNFSLALARNFDRVLATEIAKP  246 (369)
T ss_dssp             SEEEEESCTTSHHHHHHGGGSSEEEEECCCHH
T ss_pred             CEEEEccCCCCHHHHHHHhcCCEEEEEECCHH
Confidence            45999999999999999875  3555554443

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=95.97  E-value=0.002  Score=54.75  Aligned_cols=107  Identities=13%  Similarity=0.073  Sum_probs=55.7

Q ss_pred             ceEEEeeCCchHHHHHHhh-CCCeEEEEecCCCCCCChhhHHhhCc-----ccccccc-cc--------------cCCCC
Q 027471           71 VRNVMDMRAVYGGFAAALK-DLKVWVMNVVPIESPDTLPIIYERGL-----FGLYHDW-CE--------------SFNTY  129 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~-~~~V~vmnv~p~~~~~~l~~i~eRGL-----i~~~~dw-ce--------------~f~ty  129 (223)
                      -++||++||||.+...+.. +..|+++-.-+.-.....+.+.+.|+     +-+++.- .+              +|+.|
T Consensus        31 a~~VLEiGtGySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~  110 (202)
T 3cvo_A           31 AEVILEYGSGGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDY  110 (202)
T ss_dssp             CSEEEEESCSHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHH
T ss_pred             CCEEEEECchHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHH
Confidence            5799999999865333322 23444444333222223444555576     3333311 11              13322


Q ss_pred             -------C--cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHH--HHHHHHHHHH
Q 027471          130 -------P--RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE--TIVEVEDLVK  185 (223)
Q Consensus       130 -------P--rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~--~~~~i~~i~~  185 (223)
                             +  .+||+|-.++-+.   ..|     +.+.=+.|||||.+++.+-..  ....++++++
T Consensus       111 ~~~i~~~~~~~~fDlIfIDg~k~---~~~-----~~~~l~~l~~GG~Iv~DNv~~r~~y~~v~~~~~  169 (202)
T 3cvo_A          111 PLAVWRTEGFRHPDVVLVDGRFR---VGC-----ALATAFSITRPVTLLFDDYSQRRWQHQVEEFLG  169 (202)
T ss_dssp             HHGGGGCTTCCCCSEEEECSSSH---HHH-----HHHHHHHCSSCEEEEETTGGGCSSGGGGHHHHC
T ss_pred             hhhhhccccCCCCCEEEEeCCCc---hhH-----HHHHHHhcCCCeEEEEeCCcCCcchHHHHHHHh
Confidence                   3  6789887764322   123     333448899999998876322  2344555544

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=95.73  E-value=0.0046  Score=56.67  Aligned_cols=96  Identities=16%  Similarity=0.264  Sum_probs=57.3

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC------------------CeEE-EEecCCCCCCCh----h-------hHHhhCcccc
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL------------------KVWV-MNVVPIESPDTL----P-------IIYERGLFGL  118 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~------------------~V~v-mnv~p~~~~~~l----~-------~i~eRGLi~~  118 (223)
                      ...-+|+|+||+.|..+-.+.+.                  .+.| .|=.|.+--+++    +       -.+--|.+  
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvp--  127 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVP--  127 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEE--
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecc--
Confidence            34566899999999877655443                  2443 343343321111    1       11222223  


Q ss_pred             cccccccCCC--CC-cchhhhhhhhhhccccc-ccch-----------------------------hHHHHhhhhcccCC
Q 027471          119 YHDWCESFNT--YP-RTYDLLHADHLFSTIKK-RCSL-----------------------------KAVVAEVDRILRPD  165 (223)
Q Consensus       119 ~~dwce~f~t--yP-rtyDllH~~~lfs~~~~-rC~i-----------------------------~~vl~E~DRILRPg  165 (223)
                           ++|=.  || +++|++|++..++=..+ -+.+                             ..+|.-..|.|+||
T Consensus       128 -----gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pG  202 (359)
T 1m6e_X          128 -----GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPG  202 (359)
T ss_dssp             -----SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTT
T ss_pred             -----hhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                 34433  77 99999999987763332 1111                             13366679999999


Q ss_pred             cEEEEe
Q 027471          166 GNLILR  171 (223)
Q Consensus       166 G~~ii~  171 (223)
                      |.++++
T Consensus       203 G~mvl~  208 (359)
T 1m6e_X          203 GRMVLT  208 (359)
T ss_dssp             CEEEEE
T ss_pred             ceEEEE
Confidence            999997

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=95.37  E-value=0.011  Score=52.48  Aligned_cols=115  Identities=16%  Similarity=0.149  Sum_probs=59.7

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh-Cccc--ccccccccCCC-CC--cchhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER-GLFG--LYHDWCESFNT-YP--RTYDLLHAD  139 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR-GLi~--~~~dwce~f~t-yP--rtyDllH~~  139 (223)
                      -..|||++||.|+.+..|++.     .|+.+.+.+.... .++-..+| |+-.  +++.-...+.. .+  ..||.|-++
T Consensus       103 g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~-~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D  181 (309)
T 2b9e_A          103 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLA-SMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLD  181 (309)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHH-HHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEEC
T ss_pred             CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHH-HHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEc
Confidence            357999999999998887652     3666666443222 22222333 6532  22211112222 11  478987753


Q ss_pred             ------hhhccccc--------ccch-------hHHHHhhhhcccCCcEEEEe----ccHHHHHHHHHHHHhC
Q 027471          140 ------HLFSTIKK--------RCSL-------KAVVAEVDRILRPDGNLILR----DDAETIVEVEDLVKSL  187 (223)
Q Consensus       140 ------~lfs~~~~--------rC~i-------~~vl~E~DRILRPgG~~ii~----D~~~~~~~i~~i~~~l  187 (223)
                            +.+....+        .-.+       ..+|...-|.|+ ||.++++    ...+.-..|+.+++..
T Consensus       182 ~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~  253 (309)
T 2b9e_A          182 PSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQN  253 (309)
T ss_dssp             CCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTS
T ss_pred             CCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhC
Confidence                  23321000        0011       256777888886 9999986    2233445566665543

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=95.31  E-value=0.0033  Score=57.30  Aligned_cols=109  Identities=9%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             CCCceEEEeeCCchHHHHHHhhC------------------------------------------CCeEEEEecCCCCCC
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKD------------------------------------------LKVWVMNVVPIESPD  105 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~------------------------------------------~~V~vmnv~p~~~~~  105 (223)
                      +..-..|||.+||+|+|+..++.                                          ..|+.+.+.|..-.-
T Consensus       193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~  272 (385)
T 3ldu_A          193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI  272 (385)
T ss_dssp             CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence            33457899999999998754422                                          135666665443222


Q ss_pred             ChhhHHhhCcccccccccccCCCC--Ccchhhhhhhhhhcc-cccccchhHHHHhhhhcccC--CcEE-EEeccHHH
Q 027471          106 TLPIIYERGLFGLYHDWCESFNTY--PRTYDLLHADHLFST-IKKRCSLKAVVAEVDRILRP--DGNL-ILRDDAET  176 (223)
Q Consensus       106 ~l~~i~eRGLi~~~~dwce~f~ty--PrtyDllH~~~lfs~-~~~rC~i~~vl~E~DRILRP--gG~~-ii~D~~~~  176 (223)
                      ..+-+...|+-..++=-|..+..+  |..||+|-|+--|.. ..+.-.+..+..++-++||+  ||.+ +|+.+.+.
T Consensus       273 Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~l  349 (385)
T 3ldu_A          273 ARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYEDF  349 (385)
T ss_dssp             HHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCTTH
T ss_pred             HHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCHHH
Confidence            333344457643222222333333  478999888655432 22223456788888888887  6655 45554443

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=95.08  E-value=0.0048  Score=56.49  Aligned_cols=108  Identities=14%  Similarity=0.089  Sum_probs=58.6

Q ss_pred             CCCceEEEeeCCchHHHH--HHhhCC----------------------------------------CeEEEEecCCCCCC
Q 027471           68 WSFVRNVMDMRAVYGGFA--AALKDL----------------------------------------KVWVMNVVPIESPD  105 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFA--A~L~~~----------------------------------------~V~vmnv~p~~~~~  105 (223)
                      +..-..+||.+||+|+|+  |++...                                        .|+.+.+.|.....
T Consensus       199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~  278 (393)
T 3k0b_A          199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI  278 (393)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence            334578999999999995  333222                                        26666665543222


Q ss_pred             ChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhcc-cccccchhHHHHhhhhcccC--CcEE-EEeccHH
Q 027471          106 TLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFST-IKKRCSLKAVVAEVDRILRP--DGNL-ILRDDAE  175 (223)
Q Consensus       106 ~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~-~~~rC~i~~vl~E~DRILRP--gG~~-ii~D~~~  175 (223)
                      ..+-+...|+-..++=-+..+..  .+.+||+|-|+-=|.. ..+.-.+..+..++-++||+  ||.+ +|+.+.+
T Consensus       279 Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~  354 (393)
T 3k0b_A          279 AKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYEL  354 (393)
T ss_dssp             HHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCTT
T ss_pred             HHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            23333445664322111122222  3478999888644421 11122345677778888887  6655 4555444

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=94.80  E-value=0.014  Score=58.47  Aligned_cols=129  Identities=13%  Similarity=0.106  Sum_probs=69.1

Q ss_pred             CCccchhHhhhhHHHHHhhh--hhhccCCCCCCceEEEeeCCchHHHH------HHhhC---------C--CeEEEEecC
Q 027471           40 AAPEDFTADYQHWKNVVSKS--YLNGMGINWSFVRNVMDMRAVYGGFA------AALKD---------L--KVWVMNVVP  100 (223)
Q Consensus        40 ~~~~~f~~D~~~W~~~v~~~--Y~~~l~i~~~~iRnvLDmgaG~GgFA------A~L~~---------~--~V~vmnv~p  100 (223)
                      .+.|.|++|.-+-...-...  .++.+.-+.++.-.|||+|||.|-..      ++-++         .  .|+++--.|
T Consensus       377 ~tYe~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp  456 (745)
T 3ua3_A          377 GVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNP  456 (745)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCH
T ss_pred             HHHHHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCCh
Confidence            35788999976653322221  22112101234567999999999872      22222         2  455543222


Q ss_pred             CCCCCChhhHHhhCc---ccccccccccCCC-----CCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEE
Q 027471          101 IESPDTLPIIYERGL---FGLYHDWCESFNT-----YPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLIL  170 (223)
Q Consensus       101 ~~~~~~l~~i~eRGL---i~~~~dwce~f~t-----yPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii  170 (223)
                       .+-.+++.....|+   |-+++.-.+.+..     -|.-.|+|=|-- +........++..|.-+||.|+|||.+|=
T Consensus       457 -~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSEl-mGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP  532 (745)
T 3ua3_A          457 -NAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSEL-LGSFGDNELSPECLDGVTGFLKPTTISIP  532 (745)
T ss_dssp             -HHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECC-CBTTBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred             -HHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEec-cccccchhccHHHHHHHHHhCCCCcEEEC
Confidence             11125555555666   4455643333322     155677766531 11111233455677778999999998763

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=94.73  E-value=0.27  Score=45.52  Aligned_cols=128  Identities=16%  Similarity=0.228  Sum_probs=70.0

Q ss_pred             ceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC--cchhhhhhhhhhcccccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP--RTYDLLHADHLFSTIKKR  148 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP--rtyDllH~~~lfs~~~~r  148 (223)
                      -.+|+|+||..|||...|.+++.-|.-|-+..   .-+.+.+-+  ++.|-=+..|..-|  +.||+|=|+-.       
T Consensus       212 G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~---l~~~l~~~~--~V~~~~~d~~~~~~~~~~~D~vvsDm~-------  279 (375)
T 4auk_A          212 GMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP---MAQSLMDTG--QVTWLREDGFKFRPTRSNISWMVCDMV-------  279 (375)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCEEEEECSSC---CCHHHHTTT--CEEEECSCTTTCCCCSSCEEEEEECCS-------
T ss_pred             CCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh---cChhhccCC--CeEEEeCccccccCCCCCcCEEEEcCC-------
Confidence            46799999999999999999976555553221   112222222  22222223555534  57999988732       


Q ss_pred             cchhHHHHhhhhcccCC--cEEEEec-----c-HH----HHHHHHHHHHh--CCCeeEEe--ecCCCeeEEEEEecccC
Q 027471          149 CSLKAVVAEVDRILRPD--GNLILRD-----D-AE----TIVEVEDLVKS--LHWDVRMI--YTNDNQGMLCVHKTYWR  211 (223)
Q Consensus       149 C~i~~vl~E~DRILRPg--G~~ii~D-----~-~~----~~~~i~~i~~~--l~W~~~~~--~~~~~e~~L~~~K~~w~  211 (223)
                      |....++.-|.+.|..|  +.+|+.=     . .+    ....+.+.+..  +.......  .++..|..+.++| .|.
T Consensus       280 ~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~~l~akhL~hdReEiTV~~rk-~~a  357 (375)
T 4auk_A          280 EKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRR-IWA  357 (375)
T ss_dssp             SCHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCSSEEEEEEEE-CCC
T ss_pred             CChHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcchhheehhhccCCcEEEEEEEe-chh
Confidence            33446666667777766  2455551     1 11    23344444433  23333322  2444566666665 443

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=94.73  E-value=0.013  Score=53.55  Aligned_cols=108  Identities=14%  Similarity=0.131  Sum_probs=60.1

Q ss_pred             CCCceEEEeeCCchHHHH--HHhhCC----------------------------------------CeEEEEecCCCCCC
Q 027471           68 WSFVRNVMDMRAVYGGFA--AALKDL----------------------------------------KVWVMNVVPIESPD  105 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFA--A~L~~~----------------------------------------~V~vmnv~p~~~~~  105 (223)
                      +..-..++|.+||+|+|+  |++...                                        .|+.+.+.|..-..
T Consensus       192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~  271 (384)
T 3ldg_A          192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI  271 (384)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence            334578999999999986  333222                                        26666665443222


Q ss_pred             ChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhcc-cccccchhHHHHhhhhcccC--CcEE-EEeccHH
Q 027471          106 TLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFST-IKKRCSLKAVVAEVDRILRP--DGNL-ILRDDAE  175 (223)
Q Consensus       106 ~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~-~~~rC~i~~vl~E~DRILRP--gG~~-ii~D~~~  175 (223)
                      ..+-+...|+-..++=-+..+..  .+.+||+|-|+-=|.. ..+.-.+..+..++-++||+  ||.+ +++.+.+
T Consensus       272 Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~  347 (384)
T 3ldg_A          272 ARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDTD  347 (384)
T ss_dssp             HHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCTT
T ss_pred             HHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCHH
Confidence            33334455764322211223333  2368999888644431 12223456777788888887  6655 4555444

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=94.70  E-value=0.042  Score=50.37  Aligned_cols=134  Identities=15%  Similarity=0.210  Sum_probs=70.6

Q ss_pred             hhhccCCCCCCceEEEeeCC------chHHHHHH-hhCCC-e-EEEEecCCCCCCChhhHHhhCcccccccccccCCCCC
Q 027471           60 YLNGMGINWSFVRNVMDMRA------VYGGFAAA-LKDLK-V-WVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP  130 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmga------G~GgFAA~-L~~~~-V-~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP  130 (223)
                      |++.-.+.--.--+|||+||      --|++..+ +...+ + ....+.|......        .. +..| |..+.+ .
T Consensus        99 yl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~sda~--------~~-IqGD-~~~~~~-~  167 (344)
T 3r24_A           99 YLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDAD--------ST-LIGD-CATVHT-A  167 (344)
T ss_dssp             HHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBCSSS--------EE-EESC-GGGEEE-S
T ss_pred             HhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccccCCC--------eE-EEcc-cccccc-C
Confidence            66543343344578999997      67887655 44443 3 3356767654211        11 2233 433222 2


Q ss_pred             cchhhhhhhhhhccccc----c---cchhHHHHhh-hhcccCCcEEEEe----ccHHHHHHHHHHHHhCCCeeEEee---
Q 027471          131 RTYDLLHADHLFSTIKK----R---CSLKAVVAEV-DRILRPDGNLILR----DDAETIVEVEDLVKSLHWDVRMIY---  195 (223)
Q Consensus       131 rtyDllH~~~lfs~~~~----r---C~i~~vl~E~-DRILRPgG~~ii~----D~~~~~~~i~~i~~~l~W~~~~~~---  195 (223)
                      +-||+|=|+-.=....+    +   -.+-...+|+ .++|+|||.|++-    ...+.   +.++.+.+.+-.....   
T Consensus       168 ~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~---L~~lrk~F~~VK~fK~ASR  244 (344)
T 3r24_A          168 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNAD---LYKLMGHFSWWTAFVTNVN  244 (344)
T ss_dssp             SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHH---HHHHHTTEEEEEEEEEGGG
T ss_pred             CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHH---HHHHHhhCCeEEEECCCCC
Confidence            66888666422221111    1   0122444554 4589999999986    22233   4444444433332222   


Q ss_pred             cCCCeeEEEEEe
Q 027471          196 TNDNQGMLCVHK  207 (223)
Q Consensus       196 ~~~~e~~L~~~K  207 (223)
                      .+++|.+|++..
T Consensus       245 a~SsEvYLVG~g  256 (344)
T 3r24_A          245 ASSSEAFLIGAN  256 (344)
T ss_dssp             TTSSCEEEEEEE
T ss_pred             CCCeeEEEEeee
Confidence            356899999976

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=94.32  E-value=0.0017  Score=56.14  Aligned_cols=74  Identities=16%  Similarity=0.083  Sum_probs=41.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCC--CeEEEEecC-------CCCCCChhhHHhhCc---cccccccccc-CCCCC---cchh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL--KVWVMNVVP-------IESPDTLPIIYERGL---FGLYHDWCES-FNTYP---RTYD  134 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p-------~~~~~~l~~i~eRGL---i~~~~dwce~-f~tyP---rtyD  134 (223)
                      -.+|||+|||+|.++..|+.+  .|+.+.+.|       ..-....+-+...|+   +-+++.-.+. ++.++   .+||
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD  163 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPD  163 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCCS
T ss_pred             cCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCcc
Confidence            357999999999999998876  466677666       211111111112233   2233321112 22344   6899


Q ss_pred             hhhhhhhhcc
Q 027471          135 LLHADHLFST  144 (223)
Q Consensus       135 llH~~~lfs~  144 (223)
                      +|-++-.|.+
T Consensus       164 ~V~~dP~~~~  173 (258)
T 2r6z_A          164 IVYLDPMYPE  173 (258)
T ss_dssp             EEEECCCC--
T ss_pred             EEEECCCCCC
Confidence            9988766654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=93.97  E-value=0.038  Score=48.26  Aligned_cols=36  Identities=14%  Similarity=0.045  Sum_probs=27.5

Q ss_pred             ccCCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCC
Q 027471           63 GMGINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPI  101 (223)
Q Consensus        63 ~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~  101 (223)
                      .+++..+   +|||+|||+|.++..|+++  .|+++.+.+.
T Consensus        42 ~~~~~~~---~VLEIG~G~G~lt~~L~~~~~~V~avEid~~   79 (271)
T 3fut_A           42 AARPFTG---PVFEVGPGLGALTRALLEAGAEVTAIEKDLR   79 (271)
T ss_dssp             HHCCCCS---CEEEECCTTSHHHHHHHHTTCCEEEEESCGG
T ss_pred             hcCCCCC---eEEEEeCchHHHHHHHHHcCCEEEEEECCHH
Confidence            3455444   8999999999999999887  4677766544

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=93.96  E-value=0.0084  Score=57.09  Aligned_cols=132  Identities=13%  Similarity=0.158  Sum_probs=71.0

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----------------------CeEEEEecCCCCCCChhhH----HhhCccc-------
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----------------------KVWVMNVVPIESPDTLPII----YERGLFG-------  117 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----------------------~V~vmnv~p~~~~~~l~~i----~eRGLi~-------  117 (223)
                      -.+|+|.+||+|+|..++.++                      .+..+-+.|.    +..++    .-+|+..       
T Consensus       170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~----~~~lA~~nl~l~gi~~~~~~~~~  245 (541)
T 2ar0_A          170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG----TRRLALMNCLLHDIEGNLDHGGA  245 (541)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH----HHHHHHHHHHTTTCCCBGGGTBS
T ss_pred             CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHH----HHHHHHHHHHHhCCCccccccCC
Confidence            457999999999997665431                      3555444332    22222    2245432       


Q ss_pred             ccccccccCCC--CC-cchhhhhhhhhhcccccc----------cch-hHHHHhhhhcccCCcEEEEeccHHHH------
Q 027471          118 LYHDWCESFNT--YP-RTYDLLHADHLFSTIKKR----------CSL-KAVVAEVDRILRPDGNLILRDDAETI------  177 (223)
Q Consensus       118 ~~~dwce~f~t--yP-rtyDllH~~~lfs~~~~r----------C~i-~~vl~E~DRILRPgG~~ii~D~~~~~------  177 (223)
                      +++  +.+|..  .+ ..||+|=+.--|+.....          -.. ..++..+-|.|+|||.+.+--+...+      
T Consensus       246 I~~--gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~  323 (541)
T 2ar0_A          246 IRL--GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG  323 (541)
T ss_dssp             EEE--SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHH
T ss_pred             eEe--CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHH
Confidence            222  234443  22 679998876666543210          111 15678889999999998776444432      


Q ss_pred             HHHHH-HHHhCCCeeEEee-------cCCCeeEEEEEec
Q 027471          178 VEVED-LVKSLHWDVRMIY-------TNDNQGMLCVHKT  208 (223)
Q Consensus       178 ~~i~~-i~~~l~W~~~~~~-------~~~~e~~L~~~K~  208 (223)
                      .++.+ |++.-.....+..       +.-..-+|+.+|.
T Consensus       324 ~~iR~~L~~~~~l~~ii~Lp~~~F~~t~v~t~Ilvl~k~  362 (541)
T 2ar0_A          324 TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG  362 (541)
T ss_dssp             HHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEB
T ss_pred             HHHHHHHhhcCCEEEEEEcCcCcccCCCCcEEEEEEECC
Confidence            34543 4554333332221       1224566777663

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=93.96  E-value=0.019  Score=50.92  Aligned_cols=70  Identities=11%  Similarity=0.095  Sum_probs=41.8

Q ss_pred             cCCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhh----CcccccccccccCCC--CC-cchh
Q 027471           64 MGINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYER----GLFGLYHDWCESFNT--YP-RTYD  134 (223)
Q Consensus        64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eR----GLi~~~~dwce~f~t--yP-rtyD  134 (223)
                      +++..  -.+|||+|||.|.+++.|+++  .|+++.+.+.    .++.+.++    +=+-+++   +.+..  ++ .+||
T Consensus        46 l~~~~--~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~----li~~a~~~~~~~~~v~vi~---gD~l~~~~~~~~fD  116 (295)
T 3gru_A           46 ANLTK--DDVVLEIGLGKGILTEELAKNAKKVYVIEIDKS----LEPYANKLKELYNNIEIIW---GDALKVDLNKLDFN  116 (295)
T ss_dssp             TTCCT--TCEEEEECCTTSHHHHHHHHHSSEEEEEESCGG----GHHHHHHHHHHCSSEEEEE---SCTTTSCGGGSCCS
T ss_pred             cCCCC--cCEEEEECCCchHHHHHHHhcCCEEEEEECCHH----HHHHHHHHhccCCCeEEEE---CchhhCCcccCCcc
Confidence            44443  358999999999999999876  4666666554    33333322    2122333   23333  34 4699


Q ss_pred             hhhhhhhh
Q 027471          135 LLHADHLF  142 (223)
Q Consensus       135 llH~~~lf  142 (223)
                      .|-+..-|
T Consensus       117 ~Iv~NlPy  124 (295)
T 3gru_A          117 KVVANLPY  124 (295)
T ss_dssp             EEEEECCG
T ss_pred             EEEEeCcc
Confidence            87766333

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=93.54  E-value=0.033  Score=48.26  Aligned_cols=86  Identities=19%  Similarity=0.206  Sum_probs=47.3

Q ss_pred             cccccccCCCCCc----chhhhhhhhhhcccccccc-hhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEE
Q 027471          119 YHDWCESFNTYPR----TYDLLHADHLFSTIKKRCS-LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM  193 (223)
Q Consensus       119 ~~dwce~f~tyPr----tyDllH~~~lfs~~~~rC~-i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~  193 (223)
                      ..|..+.++..+.    .||++-.+ .|+.-++-.. -+.+|.+|-|.|||||.++.-....   .+.+-+..-..++..
T Consensus       156 ~GDa~~~l~~~~~~~~~~~D~iflD-~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa~---~vrr~L~~aGF~v~~  231 (257)
T 2qy6_A          156 FGDINELISQLDDSLNQKVDAWFLD-GFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAG---FVRRGLQEAGFTMQK  231 (257)
T ss_dssp             ESCHHHHGGGSCGGGTTCEEEEEEC-SSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCBH---HHHHHHHHHTEEEEE
T ss_pred             ECcHHHHHhhcccccCCeEEEEEEC-CCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCCH---HHHHHHHHCCCEEEe
Confidence            3444444555553    68988775 3543222110 2479999999999999998521111   233333333444432


Q ss_pred             ee-cCCCeeEEEEEec
Q 027471          194 IY-TNDNQGMLCVHKT  208 (223)
Q Consensus       194 ~~-~~~~e~~L~~~K~  208 (223)
                      .. -..+...+.+.|.
T Consensus       232 ~~g~~~kr~m~~a~~~  247 (257)
T 2qy6_A          232 RKGFGRKREMLCGVME  247 (257)
T ss_dssp             ECCSTTCCCEEEEEEC
T ss_pred             CCCCCCCCceEEEEec
Confidence            21 1235567787774

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=93.34  E-value=0.053  Score=46.34  Aligned_cols=39  Identities=10%  Similarity=0.131  Sum_probs=27.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYER  113 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eR  113 (223)
                      -.+|||+|||+|.++.+|.+++   |+++.+.+.    .++.+.++
T Consensus        32 ~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~----~~~~~~~~   73 (249)
T 3ftd_A           32 GNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE----MVENLKSI   73 (249)
T ss_dssp             TCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHH----HHHHHTTS
T ss_pred             cCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHH----HHHHHHhc
Confidence            4579999999999999999884   555544332    44444444

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=93.17  E-value=0.085  Score=47.05  Aligned_cols=128  Identities=13%  Similarity=0.078  Sum_probs=64.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-CeE---EEEecCCCCC-CChhhH-HhhCccccc-c-cccccCCCCCcchhhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-KVW---VMNVVPIESP-DTLPII-YERGLFGLY-H-DWCESFNTYPRTYDLLHADHLF  142 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-~V~---vmnv~p~~~~-~~l~~i-~eRGLi~~~-~-dwce~f~tyPrtyDllH~~~lf  142 (223)
                      -.+|+|+||+-|||.-+.+++ +|-   -. ++-.+.| .....+ +--.++-+. . |..   ..-++-+|+|=|+-.=
T Consensus        74 g~~VVDLGaAPGGWSQvAa~~~~vg~V~G~-vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~---~~~~~~~DvVLSDMAP  149 (269)
T 2px2_A           74 IGKVVDLGCGRGGWSYYAATMKNVQEVRGY-TKGGPGHEEPMLMQSYGWNIVTMKSGVDVF---YKPSEISDTLLCDIGE  149 (269)
T ss_dssp             CEEEEEETCTTSHHHHHHTTSTTEEEEEEE-CCCSTTSCCCCCCCSTTGGGEEEECSCCGG---GSCCCCCSEEEECCCC
T ss_pred             CCEEEEcCCCCCHHHHHHhhhcCCCCceeE-EEccccccCCCcccCCCceEEEeeccCCcc---CCCCCCCCEEEeCCCC
Confidence            468999999999999999887 342   11 1222211 000000 000112111 1 321   1224678888776433


Q ss_pred             cccccc-----cchhHHHHhhh-hcccCCc-EEEEe----ccHHHH---HHHHHHHHhCCCeeEEe--ecCCCeeEEEEE
Q 027471          143 STIKKR-----CSLKAVVAEVD-RILRPDG-NLILR----DDAETI---VEVEDLVKSLHWDVRMI--YTNDNQGMLCVH  206 (223)
Q Consensus       143 s~~~~r-----C~i~~vl~E~D-RILRPgG-~~ii~----D~~~~~---~~i~~i~~~l~W~~~~~--~~~~~e~~L~~~  206 (223)
                      + ..++     ..+ . .+|+- ++|+||| .|++-    +..+..   .++++.++...  +...  -.+..|.+++|.
T Consensus       150 n-SG~~~vD~~Rs~-~-aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~~vk--vk~paSR~~S~E~YlVa~  224 (269)
T 2px2_A          150 S-SPSAEIEEQRTL-R-ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGL--VRVPLSRNSNHEMYWVSG  224 (269)
T ss_dssp             C-CSCHHHHHHHHH-H-HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEE--ECCTTSCTTCCCEEEETT
T ss_pred             C-CCccHHHHHHHH-H-HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHcCCEE--EECCCCCCCCccEEEEec
Confidence            3 2111     112 2 34544 8999999 88774    224443   35555555543  1111  124579998875


Q ss_pred             e
Q 027471          207 K  207 (223)
Q Consensus       207 K  207 (223)
                      -
T Consensus       225 ~  225 (269)
T 2px2_A          225 A  225 (269)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=92.82  E-value=0.21  Score=44.65  Aligned_cols=138  Identities=17%  Similarity=0.232  Sum_probs=75.6

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHH------hhCc-----cc-ccccccccCCCCCcchh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIY------ERGL-----FG-LYHDWCESFNTYPRTYD  134 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~------eRGL-----i~-~~~dwce~f~tyPrtyD  134 (223)
                      ...-++||=+|.|-|+.++.+.+. +|--+.++..+.. -++++.      ..|.     +- .+.|-.+-+...+++||
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~-Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yD  159 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAG-VVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFD  159 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHH-HHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHH-HHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCC
Confidence            456789999999999999999886 4443444444431 111111      1111     11 33333333334668999


Q ss_pred             hhhhhhhhccccc--ccchhHHHHhhhhcccCCcEEEEe------ccHHHHHHHHHHHHhCCCeeEEe------ecCCCe
Q 027471          135 LLHADHLFSTIKK--RCSLKAVVAEVDRILRPDGNLILR------DDAETIVEVEDLVKSLHWDVRMI------YTNDNQ  200 (223)
Q Consensus       135 llH~~~lfs~~~~--rC~i~~vl~E~DRILRPgG~~ii~------D~~~~~~~i~~i~~~l~W~~~~~------~~~~~e  200 (223)
                      +|=.+ ++.....  .---..++..+.|+|+|||.++..      +.......++.+-+.+. .+...      +..+.-
T Consensus       160 vIi~D-~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~-~v~~~~~~vPty~~g~w  237 (294)
T 3o4f_A          160 VIISD-CTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFS-DVGFYQAAIPTYYGGIM  237 (294)
T ss_dssp             EEEES-CCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCS-EEEEEEECCTTSSSSCE
T ss_pred             EEEEe-CCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCC-ceeeeeeeeccCCCcce
Confidence            98765 3332111  111126788899999999999986      22223333333322222 22221      123456


Q ss_pred             eEEEEEec
Q 027471          201 GMLCVHKT  208 (223)
Q Consensus       201 ~~L~~~K~  208 (223)
                      .+.+|.|+
T Consensus       238 ~f~~as~~  245 (294)
T 3o4f_A          238 TFAWATDN  245 (294)
T ss_dssp             EEEEEESC
T ss_pred             eheeEECC
Confidence            78888876

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=92.73  E-value=0.021  Score=53.21  Aligned_cols=132  Identities=10%  Similarity=-0.032  Sum_probs=66.1

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhh---Cc--cccccc-ccccCCCCC-cchhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYER---GL--FGLYHD-WCESFNTYP-RTYDLLHADHL  141 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eR---GL--i~~~~d-wce~f~tyP-rtyDllH~~~l  141 (223)
                      -.+|||+|||+|.++.+|...+  |+.+.+.|.... ..+.+.++   |+  +-+++. ..+.++.++ ..||+|.++--
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~-~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDPP  172 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAV-AARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPA  172 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHH-HHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCE
T ss_pred             CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHH-HHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECCC
Confidence            3789999999999999998885  555555443221 12222222   66  333332 111112222 58999888633


Q ss_pred             hcccc-------cccchhHHHHhhhhcc-cCCcEEEEeccHHHHHHHHHHHHhCCCeeEEee----cCCCeeEEEEEe
Q 027471          142 FSTIK-------KRCSLKAVVAEVDRIL-RPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY----TNDNQGMLCVHK  207 (223)
Q Consensus       142 fs~~~-------~rC~i~~vl~E~DRIL-RPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~----~~~~e~~L~~~K  207 (223)
                      +....       ..|  .--+.++-+.| +-+..+++.-.+..  .++..++.+.|...++-    .+=+|-+|...+
T Consensus       173 rr~~~~grv~~led~--~P~l~~~~~~l~~~~~~~~vK~sP~l--d~~~~~~~l~~~~ev~~vSv~ge~kE~~l~~~~  246 (410)
T 3ll7_A          173 RRSGADKRVYAIADC--EPDLIPLATELLPFCSSILAKLSPMI--DLWDTLQSLLHVQELHVVAAHGEVKELLVRMSL  246 (410)
T ss_dssp             EC-----CCCCGGGE--ESCHHHHHHHHGGGSSEEEEEECTTS--CHHHHHHHCSSEEEEEEEEETTEEEEEEEEECT
T ss_pred             CcCCCCceEEehhhc--CCCHHHHHHHHHhhCCcEEEEcCCCC--ChHHHHhhCCCCcEEEEEEeCCeEEEEEEEecC
Confidence            33211       112  12344555544 44556666533222  22344456667654331    122566665543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=92.65  E-value=0.052  Score=46.78  Aligned_cols=31  Identities=6%  Similarity=0.051  Sum_probs=24.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC--eEEEEecCC
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPI  101 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~  101 (223)
                      -.+|||+|||+|.++..|++++  |+++.+.+.
T Consensus        30 ~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~   62 (255)
T 3tqs_A           30 TDTLVEIGPGRGALTDYLLTECDNLALVEIDRD   62 (255)
T ss_dssp             TCEEEEECCTTTTTHHHHTTTSSEEEEEECCHH
T ss_pred             cCEEEEEcccccHHHHHHHHhCCEEEEEECCHH
Confidence            4589999999999999999884  566655443

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=92.31  E-value=0.062  Score=46.97  Aligned_cols=39  Identities=5%  Similarity=0.100  Sum_probs=29.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCC--C----eEEEEecCCCCCCChhhHHhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDL--K----VWVMNVVPIESPDTLPIIYER  113 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~--~----V~vmnv~p~~~~~~l~~i~eR  113 (223)
                      -.+|||+|||+|.++..|+++  .    |+++.+.+.    .++.+.++
T Consensus        43 ~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~----~l~~a~~~   87 (279)
T 3uzu_A           43 GERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRD----LIGRLEQR   87 (279)
T ss_dssp             TCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHH----HHHHHHHH
T ss_pred             cCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHH----HHHHHHHh
Confidence            458999999999999999875  4    888877554    44555444

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=91.93  E-value=0.022  Score=49.63  Aligned_cols=101  Identities=23%  Similarity=0.307  Sum_probs=53.2

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCC---CChhhHHh----hC-c---cccccccccc-CC
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESP---DTLPIIYE----RG-L---FGLYHDWCES-FN  127 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~---~~l~~i~e----RG-L---i~~~~dwce~-f~  127 (223)
                      +.+++..+.-.+|||++||.|.++-.|+.++  |+.+-..|....   +.++.+.+    .| +   +-+++.-.+. ++
T Consensus        80 ~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~  159 (258)
T 2oyr_A           80 KAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT  159 (258)
T ss_dssp             HHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHST
T ss_pred             HHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHH
Confidence            3445555544689999999999998887664  555555442100   01111110    11 2   2233322222 34


Q ss_pred             CCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCc
Q 027471          128 TYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDG  166 (223)
Q Consensus       128 tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG  166 (223)
                      .++..||+|-++-.|..-.+.    ..+.+.=|+||+.+
T Consensus       160 ~~~~~fDvV~lDP~y~~~~~s----aavkk~~~~lr~l~  194 (258)
T 2oyr_A          160 DITPRPQVVYLDPMFPHKQKS----ALVKKEMRVFQSLV  194 (258)
T ss_dssp             TCSSCCSEEEECCCCCCCCC---------HHHHHHHHHS
T ss_pred             hCcccCCEEEEcCCCCCcccc----hHHHHHHHHHHHhh
Confidence            456679999888777543221    23344446777766

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=90.53  E-value=0.2  Score=51.00  Aligned_cols=56  Identities=7%  Similarity=0.119  Sum_probs=33.1

Q ss_pred             HHHHhhhhcccCCcEEEEeccHHHH-------HHHHHH-HHhCCCeeEEeecC--------CCeeEEEEEec
Q 027471          153 AVVAEVDRILRPDGNLILRDDAETI-------VEVEDL-VKSLHWDVRMIYTN--------DNQGMLCVHKT  208 (223)
Q Consensus       153 ~vl~E~DRILRPgG~~ii~D~~~~~-------~~i~~i-~~~l~W~~~~~~~~--------~~e~~L~~~K~  208 (223)
                      .++..+-+.|+|||.+.+--+...+       ..+.+. ++.......+....        ..--+|+.+|.
T Consensus       446 aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LLe~~~I~aIIdLP~~~~F~~asv~T~ILIlrK~  517 (878)
T 3s1s_A          446 LFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFREFLVGNFGLEHIFLYPREGLFEEVIKDTVVFVGRKG  517 (878)
T ss_dssp             HHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHHHHHTTTTCEEEEEECCBCCSSCSCBCCEEEEEEETT
T ss_pred             HHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHHHHHHhCCCeEEEEECCCccccCCCCCcEEEEEEEcC
Confidence            5677789999999998776444433       345543 55544444332111        23457777775

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=90.29  E-value=0.18  Score=41.57  Aligned_cols=51  Identities=12%  Similarity=0.161  Sum_probs=33.7

Q ss_pred             HhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchH-HHHHHhhC-CC--eEEEEecCCC
Q 027471           47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYG-GFAAALKD-LK--VWVMNVVPIE  102 (223)
Q Consensus        47 ~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~G-gFAA~L~~-~~--V~vmnv~p~~  102 (223)
                      +.++.|..-+.  |+..- ...  -..|+++|||.| --|.+|++ .+  |.+..+.|..
T Consensus        17 ~~~~m~e~Lae--YI~~~-~~~--~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~A   71 (153)
T 2k4m_A           17 RGSHMWNDLAV--YIIRC-SGP--GTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSH   71 (153)
T ss_dssp             CCCHHHHHHHH--HHHHH-SCS--SSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSS
T ss_pred             chhhHHHHHHH--HHHhc-CCC--CCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccc
Confidence            44455777664  66422 111  248999999999 59999986 65  5666676653

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=89.82  E-value=0.13  Score=45.51  Aligned_cols=36  Identities=14%  Similarity=0.160  Sum_probs=25.7

Q ss_pred             ccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecC
Q 027471           63 GMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVP  100 (223)
Q Consensus        63 ~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p  100 (223)
                      .|++..+  ..|||+|||+|+++.+|+++    .|+.+...|
T Consensus        21 ~L~~~~g--~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~   60 (301)
T 1m6y_A           21 FLKPEDE--KIILDCTVGEGGHSRAILEHCPGCRIIGIDVDS   60 (301)
T ss_dssp             HHCCCTT--CEEEETTCTTSHHHHHHHHHCTTCEEEEEESCH
T ss_pred             hcCCCCC--CEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCH
Confidence            3444443  48999999999999999875    356565544

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=87.59  E-value=0.12  Score=47.18  Aligned_cols=102  Identities=21%  Similarity=0.182  Sum_probs=53.5

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh-Ccc--------c-ccccccccCCC-CCcc
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER-GLF--------G-LYHDWCESFNT-YPRT  132 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR-GLi--------~-~~~dwce~f~t-yPrt  132 (223)
                      ...--.||||-||-||-+.+|++.    .|++..+.+.-. ..+.-+++| |+-        - +.+| ...++. ++.+
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~-~~l~~~l~r~~~~~~~~~~~v~v~~~D-~~~~~~~~~~~  223 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRI-ARLQKILHSYVPEEIRDGNQVRVTSWD-GRKWGELEGDT  223 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHH-HHHHHHHHHHSCTTTTTSSSEEEECCC-GGGHHHHSTTC
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHH-HHHHHHHHHhhhhhhccCCceEEEeCc-hhhcchhcccc
Confidence            333457999999999988887665    244433322110 133334443 221        1 1111 111222 3478


Q ss_pred             hhhhh----hhh----hhcc-------ccc--ccc---hh-HHHHhhhhcccCCcEEEEe
Q 027471          133 YDLLH----ADH----LFST-------IKK--RCS---LK-AVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       133 yDllH----~~~----lfs~-------~~~--rC~---i~-~vl~E~DRILRPgG~~ii~  171 (223)
                      ||.|=    |++    ++..       +..  .-.   ++ .+|...-+.|||||.+|.+
T Consensus       224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYs  283 (359)
T 4fzv_A          224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYS  283 (359)
T ss_dssp             EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            88854    332    2211       110  000   11 6777888999999999998

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=87.36  E-value=0.28  Score=42.00  Aligned_cols=29  Identities=3%  Similarity=0.006  Sum_probs=21.7

Q ss_pred             eEEEeeCCchHHHHHHhhC-CC--eEEEEecCC
Q 027471           72 RNVMDMRAVYGGFAAALKD-LK--VWVMNVVPI  101 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~-~~--V~vmnv~p~  101 (223)
                      .+|||+|||+|.+++ |.. ..  |+++.+.|.
T Consensus        23 ~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~   54 (252)
T 1qyr_A           23 QAMVEIGPGLAALTE-PVGERLDQLTVIELDRD   54 (252)
T ss_dssp             CCEEEECCTTTTTHH-HHHTTCSCEEEECCCHH
T ss_pred             CEEEEECCCCcHHHH-hhhCCCCeEEEEECCHH
Confidence            479999999999999 753 24  777666443

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=86.52  E-value=0.24  Score=48.64  Aligned_cols=41  Identities=20%  Similarity=0.278  Sum_probs=23.8

Q ss_pred             chhhhhhhhhhcc-cccccchhHHHHhhhhccc---CCcEEEEec
Q 027471          132 TYDLLHADHLFST-IKKRCSLKAVVAEVDRILR---PDGNLILRD  172 (223)
Q Consensus       132 tyDllH~~~lfs~-~~~rC~i~~vl~E~DRILR---PgG~~ii~D  172 (223)
                      .||+|-|.-=|.. ..+.-.+..+..++-++||   |||.+++-.
T Consensus       303 ~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt  347 (703)
T 3v97_A          303 PYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFS  347 (703)
T ss_dssp             CCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence            8999888644431 1222344555555665555   899886643

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=86.49  E-value=2.6  Score=37.43  Aligned_cols=112  Identities=18%  Similarity=0.082  Sum_probs=55.6

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCC-C---eEEEEecCCCCCCChhhHHhhCccc-ccccccccCCCCCcchhhhhhhh
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDL-K---VWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADH  140 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~-~---V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~tyPrtyDllH~~~  140 (223)
                      ++.+.  +|+|+||+.|||.-+.+.+ +   |..+.+-+.+... =..+..-|-.. .+.+=+.-|.--|+.+|.|=|+-
T Consensus        76 l~~g~--~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gwn~v~fk~gvDv~~~~~~~~DtllcDI  152 (267)
T 3p8z_A           76 VIPEG--RVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGWNIVKLMSGKDVFYLPPEKCDTLLCDI  152 (267)
T ss_dssp             SCCCE--EEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTTTSEEEECSCCGGGCCCCCCSEEEECC
T ss_pred             CCCCC--EEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCcCceEEEeccceeecCCccccEEEEec
Confidence            45544  9999999999999966555 4   4445554433221 01111223222 12211111222335588877763


Q ss_pred             hhcccccccchh-----HHHHhhhhcccCCcEEEEe----ccHHHHHHHHHH
Q 027471          141 LFSTIKKRCSLK-----AVVAEVDRILRPDGNLILR----DDAETIVEVEDL  183 (223)
Q Consensus       141 lfs~~~~rC~i~-----~vl~E~DRILRPgG~~ii~----D~~~~~~~i~~i  183 (223)
                      -=|.-.  ..++     .+|.=+-+.|.+ |.|.+-    -..+++++++.+
T Consensus       153 geSs~~--~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~l  201 (267)
T 3p8z_A          153 GESSPS--PTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERL  201 (267)
T ss_dssp             CCCCSC--HHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHH
T ss_pred             CCCCCC--hhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHH
Confidence            322111  1111     233333778888 777775    333444555544

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=86.41  E-value=0.51  Score=40.73  Aligned_cols=21  Identities=43%  Similarity=0.613  Sum_probs=18.1

Q ss_pred             hhHHHHhhhhcccCCcEEEEe
Q 027471          151 LKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       151 i~~vl~E~DRILRPgG~~ii~  171 (223)
                      +..++.|+-|+|+|||.+++-
T Consensus        76 l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           76 LDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEE
Confidence            457889999999999999775

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=85.86  E-value=3.1  Score=37.86  Aligned_cols=112  Identities=16%  Similarity=0.147  Sum_probs=55.2

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCC-Ce---EEEEecCCCC--CCChhhHHhhCcccccccccccCCCCCcchhhhhhh
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDL-KV---WVMNVVPIES--PDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHAD  139 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~-~V---~vmnv~p~~~--~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~  139 (223)
                      |+.+.  +|+|+||+.|||.-+.+.+ +|   ..+.+-..+.  |...| -+.--|+ ...+=+..+---|..+|+|=|+
T Consensus        92 l~~~~--~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~-ql~w~lV-~~~~~~Dv~~l~~~~~D~ivcD  167 (321)
T 3lkz_A           92 LEPVG--KVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQ-SYGWNIV-TMKSGVDVFYRPSECCDTLLCD  167 (321)
T ss_dssp             CCCCE--EEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCC-BTTGGGE-EEECSCCTTSSCCCCCSEEEEC
T ss_pred             CCCCC--EEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhh-hcCCcce-EEEeccCHhhCCCCCCCEEEEE
Confidence            44444  9999999999999966554 54   4445533321  21111 1111112 1111001111223558888876


Q ss_pred             hhhcccccccchh-----HHHHhhhhcccCC-cEEEEe--cc--HHHHHHHHHH
Q 027471          140 HLFSTIKKRCSLK-----AVVAEVDRILRPD-GNLILR--DD--AETIVEVEDL  183 (223)
Q Consensus       140 ~lfs~~~~rC~i~-----~vl~E~DRILRPg-G~~ii~--D~--~~~~~~i~~i  183 (223)
                      --=|.-  ...++     .+|.=+-+.|++| |.|.+-  -+  .+++++++.+
T Consensus       168 igeSs~--~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~l  219 (321)
T 3lkz_A          168 IGESSS--SAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELL  219 (321)
T ss_dssp             CCCCCS--CHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHH
T ss_pred             CccCCC--ChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHH
Confidence            332111  11111     2333336778899 888885  22  4445555554

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=84.18  E-value=0.26  Score=47.04  Aligned_cols=16  Identities=31%  Similarity=0.341  Sum_probs=14.2

Q ss_pred             EEEeeCCchHHHHHHh
Q 027471           73 NVMDMRAVYGGFAAAL   88 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L   88 (223)
                      .|+|.+||+|+|..++
T Consensus       247 ~VlDPaCGSG~fLi~a  262 (544)
T 3khk_A          247 RVYDPAMGSGGFFVSS  262 (544)
T ss_dssp             EEEESSCTTCHHHHHH
T ss_pred             eEeCcccCcCcHHHHH
Confidence            8999999999997665

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=83.99  E-value=1.1  Score=40.32  Aligned_cols=97  Identities=14%  Similarity=0.184  Sum_probs=62.9

Q ss_pred             eEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhh-CcccccccccccCCCCCcchhhhhhhhhhcccccccc
Q 027471           72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCS  150 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC~  150 (223)
                      .+||.+|.++|..+-+|...+++.|+=+ .-++..++.++++ |+.+.-..+..+..+.|..||++--.    .-+..-.
T Consensus        40 ~~~~~~~d~~gal~~~~~~~~~~~~~ds-~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----lpk~~~~  114 (375)
T 4dcm_A           40 GPVLILNDAFGALSCALAEHKPYSIGDS-YISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIK----VPKTLAL  114 (375)
T ss_dssp             SCEEEECCSSSHHHHHTGGGCCEEEESC-HHHHHHHHHHHHHTTCCGGGSEEEETTSCCCSSCSEEEEE----CCSCHHH
T ss_pred             CCEEEECCCCCHHHHhhccCCceEEEhH-HHHHHHHHHHHHHcCCCccceEecccccccccCCCEEEEE----cCCCHHH
Confidence            4699999999999999988888877421 1122233334433 55443222444666778889975432    1123344


Q ss_pred             hhHHHHhhhhcccCCcEEEEecc
Q 027471          151 LKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       151 i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      +...|.++-..|+||+.+++-..
T Consensus       115 l~~~L~~l~~~l~~~~~i~~~g~  137 (375)
T 4dcm_A          115 LEQQLRALRKVVTSDTRIIAGAK  137 (375)
T ss_dssp             HHHHHHHHHTTCCTTSEEEEEEE
T ss_pred             HHHHHHHHHhhCCCCCEEEEEec
Confidence            56788888889999999988644

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=83.50  E-value=0.93  Score=39.85  Aligned_cols=43  Identities=14%  Similarity=0.280  Sum_probs=29.1

Q ss_pred             cchhHHHHhhhhcccCCcEEEEe-ccH----------HHHHHHHHHHHhCCCee
Q 027471          149 CSLKAVVAEVDRILRPDGNLILR-DDA----------ETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       149 C~i~~vl~E~DRILRPgG~~ii~-D~~----------~~~~~i~~i~~~l~W~~  191 (223)
                      +.+..+|.|+.|+|+|||.+++. ++.          ..+..+..+++...|..
T Consensus        61 ~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~~~~~~~~~i~~~~~~~Gf~~  114 (323)
T 1boo_A           61 DWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFL  114 (323)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEEECCHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcccccchHHHHHHHHHhCCCEE
Confidence            34678999999999999999885 221          12444545556665554

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=81.26  E-value=0.44  Score=45.53  Aligned_cols=117  Identities=10%  Similarity=0.030  Sum_probs=61.9

Q ss_pred             CceEEEeeCCchHHHHHHhhCC-------CeEEEEecCCCCCCChhhH----HhhCcc----cccccccccCCC----CC
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL-------KVWVMNVVPIESPDTLPII----YERGLF----GLYHDWCESFNT----YP  130 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~-------~V~vmnv~p~~~~~~l~~i----~eRGLi----~~~~dwce~f~t----yP  130 (223)
                      ...+|+|-+||+|+|..++.++       .+...-+.|.    +..++    .-+|+-    .+.+  +..|..    ++
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~----~~~lA~~Nl~l~gi~~~~~~I~~--gDtL~~d~p~~~  294 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTS----TYNLARMNMILHGVPIENQFLHN--ADTLDEDWPTQE  294 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHH----HHHHHHHHHHHTTCCGGGEEEEE--SCTTTSCSCCSS
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHH----HHHHHHHHHHHcCCCcCccceEe--cceecccccccc
Confidence            4568999999999997666432       2333333222    22222    235652    1222  234433    33


Q ss_pred             -cchhhhhhhhhhcccc-------------------cccchh-HHHHhhhhccc-CCcEEEEeccHHH------HHHHHH
Q 027471          131 -RTYDLLHADHLFSTIK-------------------KRCSLK-AVVAEVDRILR-PDGNLILRDDAET------IVEVED  182 (223)
Q Consensus       131 -rtyDllH~~~lfs~~~-------------------~rC~i~-~vl~E~DRILR-PgG~~ii~D~~~~------~~~i~~  182 (223)
                       ..||+|=+.-=|+...                   ..-... .++..+=+.|+ |||.+.+--+...      -.++.+
T Consensus       295 ~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk  374 (542)
T 3lkd_A          295 PTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRK  374 (542)
T ss_dssp             CCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHH
T ss_pred             cccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHH
Confidence             6799877654443110                   000011 36788889999 9999855433322      244555


Q ss_pred             H-HHhCCCeeE
Q 027471          183 L-VKSLHWDVR  192 (223)
Q Consensus       183 i-~~~l~W~~~  192 (223)
                      . ++.-.-.+.
T Consensus       375 ~Lle~~~l~~I  385 (542)
T 3lkd_A          375 ALLEEGAIDTV  385 (542)
T ss_dssp             HHHHTTCEEEE
T ss_pred             HHHhCCceeEE
Confidence            4 555444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.41
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.36
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.34
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.33
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.32
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.31
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.31
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.31
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.3
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.26
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.23
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.16
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.15
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.15
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.14
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.12
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.12
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.1
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.08
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.06
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.06
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.05
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.03
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.99
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.97
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.97
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.96
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.87
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.84
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.81
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.79
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.77
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.74
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.74
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.68
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.66
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.64
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.63
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.61
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.58
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.52
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.39
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.33
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.13
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.1
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.06
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.03
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.99
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.98
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.95
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.93
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.87
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.87
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.82
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.73
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.68
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.62
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.58
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.55
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.55
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.48
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.1
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	96.99
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	96.89
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	96.73
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	96.67
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.34
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	96.19
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	96.08
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	96.0
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	95.87
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	95.71
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	95.47
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	94.8
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	94.49
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	93.86
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	93.61
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	93.48
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	93.35
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	93.24
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	93.04
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	92.98
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	92.92
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	92.71
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	91.88
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	91.69
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	91.48
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	86.57
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	84.07
d2h00a1	250	Methyltransferase 10 domain containing protein MET	82.75
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	80.85

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.41  E-value=2.6e-14  Score=115.85  Aligned_cols=107  Identities=16%  Similarity=0.198  Sum_probs=75.1

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCC-cchh
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYP-RTYD  134 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyP-rtyD  134 (223)
                      .++.++++.+  .+|||+|||.|.|+.+|++++  |+.+.+++.......+.+.+.|+..  .++.-++.++ || ++||
T Consensus         7 ll~~~~l~~~--~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~-~~~~~fD   83 (231)
T d1vl5a_           7 LMQIAALKGN--EEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFH   83 (231)
T ss_dssp             HHHHHTCCSC--CEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTCEE
T ss_pred             HHHhcCCCCc--CEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccc-ccccccc
Confidence            3445556554  379999999999999998884  5555554432222233344556643  3433344444 54 9999


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +|+|..++.+..+.   +.+|.|+.|+|+|||++++.+
T Consensus        84 ~v~~~~~l~~~~d~---~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          84 IVTCRIAAHHFPNP---ASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             EEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccCCH---HHHHHHHHHhcCCCcEEEEEe
Confidence            99999999888663   589999999999999999974

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.36  E-value=3.2e-14  Score=120.55  Aligned_cols=98  Identities=21%  Similarity=0.336  Sum_probs=73.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCC-cchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYP-RTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyP-rtyDllH~~~lfs  143 (223)
                      -.+|||+|||+|+++.+|+++   .|+.++++|.......+.....||..   +++.=.+.++ +| ++||+|.|..+|.
T Consensus        68 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~-~~~~sfD~V~~~~~l~  146 (282)
T d2o57a1          68 QAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-CEDNSYDFIWSQDAFL  146 (282)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-SCTTCEEEEEEESCGG
T ss_pred             CCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccc-ccccccchhhccchhh
Confidence            469999999999999999875   46667776664433455556677753   2322122343 44 9999999999998


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +..+.   +.+|.|+.|+|||||.+++.|
T Consensus       147 h~~d~---~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         147 HSPDK---LKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             GCSCH---HHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCH---HHHHHHHHHhcCCCcEEEEEE
Confidence            88764   589999999999999999974

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.34  E-value=1.7e-13  Score=118.72  Aligned_cols=109  Identities=8%  Similarity=0.128  Sum_probs=85.6

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhh
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLL  136 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDll  136 (223)
                      .++.|++++|  -+|||+|||.|++|.+++++   .|+.+++++.+.....+.+.+.|+...+..-+..+..+|.+||.|
T Consensus        44 ~~~~l~l~~g--~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i  121 (280)
T d2fk8a1          44 NLDKLDLKPG--MTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRI  121 (280)
T ss_dssp             HHTTSCCCTT--CEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEE
T ss_pred             HHHHcCCCCC--CEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhh
Confidence            4556666554  57999999999999998765   566678877654445667777899776555555666688999999


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      -+..+|.|..++ ..+.++.++.|+|||||.+++.
T Consensus       122 ~si~~~eh~~~~-~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         122 VSIEAFEHFGHE-NYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             EEESCGGGTCGG-GHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hHhhHHHHhhhh-hHHHHHHHHHhccCCCceEEEE
Confidence            999999887653 4678999999999999999985

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=2.4e-13  Score=109.12  Aligned_cols=91  Identities=20%  Similarity=0.226  Sum_probs=74.0

Q ss_pred             EEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcccccccchh
Q 027471           73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLK  152 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~  152 (223)
                      +|||+|||+|.|+..|.+  ++.+.++|    ..++.+-+|++. .+...++.++..+++||+|+|.+++.+..+   .+
T Consensus        39 ~vLDiGcG~G~~~~~~~~--~~giD~s~----~~~~~a~~~~~~-~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d---~~  108 (208)
T d1vlma_          39 RGVEIGVGTGRFAVPLKI--KIGVEPSE----RMAEIARKRGVF-VLKGTAENLPLKDESFDFALMVTTICFVDD---PE  108 (208)
T ss_dssp             CEEEETCTTSTTHHHHTC--CEEEESCH----HHHHHHHHTTCE-EEECBTTBCCSCTTCEEEEEEESCGGGSSC---HH
T ss_pred             eEEEECCCCcccccccce--EEEEeCCh----hhcccccccccc-cccccccccccccccccccccccccccccc---cc
Confidence            599999999999999964  45555543    478888888754 556666777766799999999999999865   46


Q ss_pred             HHHHhhhhcccCCcEEEEecc
Q 027471          153 AVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       153 ~vl~E~DRILRPgG~~ii~D~  173 (223)
                      .+|.|+.|+|||||.+++.+.
T Consensus       109 ~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_         109 RALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEE
T ss_pred             cchhhhhhcCCCCceEEEEec
Confidence            899999999999999999843

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=7.9e-13  Score=106.82  Aligned_cols=94  Identities=21%  Similarity=0.362  Sum_probs=71.7

Q ss_pred             EEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhh-hhhhccccccc
Q 027471           73 NVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHA-DHLFSTIKKRC  149 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~-~~lfs~~~~rC  149 (223)
                      .|||+|||+|.++..|++++  |+.+.+++    ..++.+.++|..-.+..-.+.++.-+++||+|-| ..++++..+. 
T Consensus        45 ~vLDiGcG~G~~~~~l~~~~~~v~giD~s~----~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~-  119 (246)
T d2avna1          45 RVLDLGGGTGKWSLFLQERGFEVVLVDPSK----EMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK-  119 (246)
T ss_dssp             EEEEETCTTCHHHHHHHTTTCEEEEEESCH----HHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH-
T ss_pred             EEEEECCCCchhcccccccceEEEEeeccc----ccccccccccccccccccccccccccccccceeeecchhhhhhhH-
Confidence            59999999999999999995  45555544    3788899998765443323445433499999987 4677777654 


Q ss_pred             chhHHHHhhhhcccCCcEEEEecc
Q 027471          150 SLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       150 ~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                        +.+|.|+.|+|+|||.++++..
T Consensus       120 --~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         120 --DKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             --HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --HHHHHHHHhhcCcCcEEEEEEC
Confidence              5789999999999999999853

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=2.3e-13  Score=112.80  Aligned_cols=107  Identities=8%  Similarity=0.032  Sum_probs=74.9

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC-CeEE--EEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhh
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-KVWV--MNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLL  136 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-~V~v--mnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDll  136 (223)
                      +.+++.+|  .+|||+|||+|+++.+|+++ ++.|  +.++|.......+.+.+.|+-.-+.--+..+..  .+.+||+|
T Consensus        27 ~~~~l~pg--~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v  104 (245)
T d1nkva_          27 RVLRMKPG--TRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVA  104 (245)
T ss_dssp             HHTCCCTT--CEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEE
T ss_pred             HHcCCCCC--CEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEE
Confidence            45677776  47999999999999999765 5555  555444322234445555874311111223332  34999999


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      +|..++.+..+.   +.+|.|+.|+|||||.+++.+.
T Consensus       105 ~~~~~~~~~~d~---~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_         105 ACVGATWIAGGF---AGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             EEESCGGGTSSS---HHHHHHHTTSEEEEEEEEEEEE
T ss_pred             EEEehhhccCCH---HHHHHHHHHHcCcCcEEEEEec
Confidence            999999888764   5899999999999999999843

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=3.1e-13  Score=118.19  Aligned_cols=110  Identities=9%  Similarity=0.094  Sum_probs=84.2

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCC-C--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhh
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-K--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLL  136 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDll  136 (223)
                      .++.++++.|  .+|||+|||.||+|.+++++ +  |+.+++++.+.....+.+.+.||...++--+..+.+.+.+||-|
T Consensus        53 ~~~~l~l~~G--~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i  130 (291)
T d1kpia_          53 ALDKLNLEPG--MTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRI  130 (291)
T ss_dssp             HHHTTCCCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEE
T ss_pred             HHHhcCCCCC--CEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceE
Confidence            5567777665  47999999999999999765 4  55677766654445667778899876554445566667999999


Q ss_pred             hhhhhhcccccc------cchhHHHHhhhhcccCCcEEEEe
Q 027471          137 HADHLFSTIKKR------CSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       137 H~~~lfs~~~~r------C~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      -|-..|.|..+.      -..+.++.++.|+|||||.+++.
T Consensus       131 ~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~  171 (291)
T d1kpia_         131 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH  171 (291)
T ss_dssp             EEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             eechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence            999899887642      23568999999999999999986

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.31  E-value=1.9e-13  Score=112.25  Aligned_cols=103  Identities=20%  Similarity=0.297  Sum_probs=73.9

Q ss_pred             cCCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcc--cccccccccCCCCC-cchhhhhh
Q 027471           64 MGINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLF--GLYHDWCESFNTYP-RTYDLLHA  138 (223)
Q Consensus        64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi--~~~~dwce~f~tyP-rtyDllH~  138 (223)
                      +.++.|  ..|||+|||+|.++..|+++  .|+.+.+++..-....+.+.++|+.  -.+..-.+.++ || ++||+|.|
T Consensus        12 ~~~~~~--~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~   88 (234)
T d1xxla_          12 AECRAE--HRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDIITC   88 (234)
T ss_dssp             HTCCTT--CEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEEEE
T ss_pred             hCCCCC--CEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccccccccccccccc-ccccccceeee
Confidence            345555  36999999999999999987  4555555544222233445566663  23443234444 55 99999999


Q ss_pred             hhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          139 DHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       139 ~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      .++|.+..+   .+.+|-|+.|+|||||++++.+
T Consensus        89 ~~~l~~~~d---~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          89 RYAAHHFSD---VRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             ESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eceeecccC---HHHHHHHHHHeeCCCcEEEEEE
Confidence            999988665   4799999999999999999964

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=3.7e-13  Score=117.43  Aligned_cols=109  Identities=12%  Similarity=0.182  Sum_probs=85.5

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhh
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLL  136 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDll  136 (223)
                      .++.+++++|  ..|||+|||.|++|.++++.   .|+.+++++.+.....+.+.+.|+..-+.--+..+...|.+||-|
T Consensus        54 ~~~~l~l~~G--~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i  131 (285)
T d1kpga_          54 ALGKLGLQPG--MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRI  131 (285)
T ss_dssp             HHTTTTCCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEE
T ss_pred             HHHHcCCCCC--CEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccce
Confidence            5567777666  67999999999999988765   677789988876656677888898875443345666678999998


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      -|-..|.|..++ ....++.++.|+|||||.+++.
T Consensus       132 ~si~~~eh~~~~-~~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_         132 VSIGAFEHFGHE-RYDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             EEESCGGGTCTT-THHHHHHHHHHHSCTTCEEEEE
T ss_pred             eeehhhhhcCch-hHHHHHHHHHhhcCCCCcEEEE
Confidence            888888876542 3458999999999999999874

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=8.8e-13  Score=107.90  Aligned_cols=119  Identities=16%  Similarity=0.220  Sum_probs=82.8

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHh----hCccc--ccccccccCCCCCcchhhhhhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYE----RGLFG--LYHDWCESFNTYPRTYDLLHAD  139 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~e----RGLi~--~~~dwce~f~tyPrtyDllH~~  139 (223)
                      .....|||+|||.|.++..|+++   .|+.+.+++.    .++.+.+    .|...  .++.-.+.++.-+.+||+|.|.
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~----~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~  134 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITED----FLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQ  134 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHH----HHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHH----Hhhccccccccccccccccccccccccccccccccccccc
Confidence            44578999999999999988755   4677777654    4443333    34322  1221122344334999999999


Q ss_pred             hhhcccccccchhHHHHhhhhcccCCcEEEEeccHH---------------HHHHHHHHHHhCCCeeE
Q 027471          140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE---------------TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~---------------~~~~i~~i~~~l~W~~~  192 (223)
                      .++.+..+. .+..+|.++-|+|||||.+++.|...               ..+.++++++.--+++.
T Consensus       135 ~~l~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii  201 (222)
T d2ex4a1         135 WVIGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLL  201 (222)
T ss_dssp             SCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred             cccccchhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEE
Confidence            999988753 34589999999999999999983311               25678888887777754

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.23  E-value=1.8e-12  Score=103.40  Aligned_cols=94  Identities=21%  Similarity=0.279  Sum_probs=68.0

Q ss_pred             EEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHH----hhCcccccccccccCCC--CC-cchhhhhhhhhhc
Q 027471           73 NVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIY----ERGLFGLYHDWCESFNT--YP-RTYDLLHADHLFS  143 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~----eRGLi~~~~dwce~f~t--yP-rtyDllH~~~lfs  143 (223)
                      .|||+|||+|.++..|++.+  |+.+.+++.    .++.+.    +.|..-  ...|.....  ++ ++||+|.|..+|.
T Consensus        40 ~ILDiGcG~G~~~~~la~~~~~v~giD~S~~----~i~~ak~~~~~~~~~~--~~~~~d~~~l~~~~~~fD~I~~~~~l~  113 (226)
T d1ve3a1          40 KVLDLACGVGGFSFLLEDYGFEVVGVDISED----MIRKAREYAKSRESNV--EFIVGDARKLSFEDKTFDYVIFIDSIV  113 (226)
T ss_dssp             EEEEETCTTSHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCC--EEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             EEEEECCCcchhhhhHhhhhccccccccccc----chhhhhhhhccccccc--cccccccccccccCcCceEEEEecchh
Confidence            68999999999999999874  566666433    443333    345422  222333333  33 9999999999999


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      +..+ ..+..+|.|+.|+|+|||.+++.+.
T Consensus       114 ~~~~-~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         114 HFEP-LELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             GCCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hCCh-hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            8753 2466899999999999999999854

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.16  E-value=3.7e-12  Score=106.88  Aligned_cols=105  Identities=20%  Similarity=0.342  Sum_probs=76.9

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCC--C--eEEEEecCCCCCCChhhHHhhCcccccccccc-cCCCCCcchhhhhhhh
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDL--K--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCE-SFNTYPRTYDLLHADH  140 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~--~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce-~f~tyPrtyDllH~~~  140 (223)
                      ++.+..++|||+|||.|.++.+|+++  +  ++++++ |.......+.+.+.|+..-+.--+. .|+..|..||++.+.+
T Consensus        76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~  154 (253)
T d1tw3a2          76 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSF  154 (253)
T ss_dssp             SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEES
T ss_pred             cCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeecc
Confidence            56778899999999999999999876  3  445554 3222234556667787543322222 3555678899999999


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +++++.+. ....+|.++-|+|||||.++|.|
T Consensus       155 vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         155 VLLNWPDH-DAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             CGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccCCch-hhHHHHHHHHHhcCCCcEEEEEe
Confidence            99988753 23578999999999999999974

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.15  E-value=4e-12  Score=107.61  Aligned_cols=121  Identities=14%  Similarity=0.123  Sum_probs=82.3

Q ss_pred             CCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhh----CcccccccccccCCCCCcchhhhhhh
Q 027471           67 NWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYER----GLFGLYHDWCESFNTYPRTYDLLHAD  139 (223)
Q Consensus        67 ~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eR----GLi~~~~dwce~f~tyPrtyDllH~~  139 (223)
                      ....-.+|||+|||.|.++..|+.+   .|+.+..++.    .++.+.++    ..+-.++.=.+.|+.-+++||+|.|.
T Consensus        90 ~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~----~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~  165 (254)
T d1xtpa_          90 PGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKH----MLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQ  165 (254)
T ss_dssp             TTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHH----HHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEE
T ss_pred             CCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHH----HHHhhhccccccccceeEEccccccccCCCccceEEee
Confidence            3455678999999999999988754   4666666543    44444433    33323322112333234899999999


Q ss_pred             hhhcccccccchhHHHHhhhhcccCCcEEEEeccHH----------------HHHHHHHHHHhCCCeeE
Q 027471          140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~----------------~~~~i~~i~~~l~W~~~  192 (223)
                      .+|.|..+. .+..+|.++.|+|+|||+++|.|...                ....++++++.--+++.
T Consensus       166 ~vl~hl~d~-d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii  233 (254)
T d1xtpa_         166 WTAIYLTDA-DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV  233 (254)
T ss_dssp             SCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred             ccccccchh-hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEE
Confidence            999998753 35688999999999999999975321                13567777776667654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.15  E-value=4.6e-12  Score=103.53  Aligned_cols=102  Identities=17%  Similarity=0.101  Sum_probs=69.6

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhh-hhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHAD-HLF  142 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~-~lf  142 (223)
                      ......|||+|||+|.++..|++++  |+.+.++|..-....+.+.++|+-..++  |+.+..  ++.+||+|.|. ++|
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~--~~d~~~l~~~~~fD~I~~~~~~~  116 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFL--QGDVLEIAFKNEFDAVTMFFSTI  116 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEE--ESCGGGCCCCSCEEEEEECSSGG
T ss_pred             CCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchhe--ehhhhhcccccccchHhhhhhhh
Confidence            4445689999999999999998884  5555555532222233334556533222  223333  55899999985 566


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      .+.. ......+|-++.|+|||||.++++.
T Consensus       117 ~~~~-~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         117 MYFD-EEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             GGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcCC-hHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            6653 3456789999999999999999964

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.14  E-value=4e-12  Score=102.22  Aligned_cols=97  Identities=16%  Similarity=0.219  Sum_probs=69.9

Q ss_pred             EEEeeCCchHHHHHHhhCCCeE--EEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhcccccc
Q 027471           73 NVMDMRAVYGGFAAALKDLKVW--VMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFSTIKKR  148 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~~V~--vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~~~~r  148 (223)
                      +|||+|||.|.++.+|++++.-  .+.+++..-....+.+.+.|+..+ .-.|..+.+  ++.+||+|.|..+|.+..+ 
T Consensus        33 rvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~-  110 (198)
T d2i6ga1          33 RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNL-QTDLVDLNTLTFDGEYDFILSTVVMMFLEA-  110 (198)
T ss_dssp             EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTE-EEEECCTTTCCCCCCEEEEEEESCGGGSCT-
T ss_pred             cEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccch-hhhheecccccccccccEEEEeeeeecCCH-
Confidence            6999999999999999999644  444444322222333456676532 222334443  5699999999999988754 


Q ss_pred             cchhHHHHhhhhcccCCcEEEEe
Q 027471          149 CSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       149 C~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      -....+|.++.|+|||||++++.
T Consensus       111 ~~~~~~l~~~~~~L~pgG~~~~~  133 (198)
T d2i6ga1         111 QTIPGLIANMQRCTKPGGYNLIV  133 (198)
T ss_dssp             THHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEE
Confidence            34678999999999999999996

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.12  E-value=5.2e-12  Score=103.19  Aligned_cols=101  Identities=13%  Similarity=0.111  Sum_probs=75.2

Q ss_pred             eEEEeeCCchHHHHHHhhCC------CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhcc
Q 027471           72 RNVMDMRAVYGGFAAALKDL------KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFST  144 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~------~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~  144 (223)
                      .+|||+|||+|..+..|++.      .|+.+.++|..-....+.+.+.+....++--|..+..+| ..+|++.|..++++
T Consensus        41 ~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~~  120 (225)
T d1im8a_          41 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQF  120 (225)
T ss_dssp             CEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGGG
T ss_pred             CEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeeccc
Confidence            47999999999998887642      466676655532222222334477777777777888888 89999999988877


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      .. .-....+|.||-|.|+|||.+++.|.
T Consensus       121 ~~-~~d~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_         121 LP-PEDRIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             SC-GGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cC-hhhHHHHHHHHHHhCCCCceeecccc
Confidence            64 23456899999999999999999853

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.12  E-value=2.4e-11  Score=98.07  Aligned_cols=136  Identities=14%  Similarity=0.161  Sum_probs=86.9

Q ss_pred             CceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCC-cchhhhhhhhhhcc
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYP-RTYDLLHADHLFST  144 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyP-rtyDllH~~~lfs~  144 (223)
                      ...+|||+|||+|.++.+|++.  .|.++.++|.......+-+...|+-.  +-.-++..+..++ .+||+|-|...|+.
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~p~~~  131 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRA  131 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCSTT
T ss_pred             CCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEEEcccEEe
Confidence            4568999999999999999876  57776665442222222223335533  1122233454444 89999999877754


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEec-cHHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK  207 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D-~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K  207 (223)
                      ..+  .++.++-++.|+|+|||.+++.- .......+.+.++..-+++........=++|-|+|
T Consensus       132 ~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~~gf~vl~a~K  193 (194)
T d1dusa_         132 GKE--VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             CHH--HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEETTEEEEEEEC
T ss_pred             cch--hhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEecCCcEEEEEEE
Confidence            433  24578999999999999987753 22333455555565555665544455667888877

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.10  E-value=4.3e-11  Score=98.03  Aligned_cols=89  Identities=21%  Similarity=0.387  Sum_probs=66.4

Q ss_pred             EEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCc--ccccccccccCCC--CCcchhhhhhhhhhcccc
Q 027471           73 NVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGL--FGLYHDWCESFNT--YPRTYDLLHADHLFSTIK  146 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGL--i~~~~dwce~f~t--yPrtyDllH~~~lfs~~~  146 (223)
                      +|||+|||+|.++..|+++  .|+.+..+|.    .++.+-++.-  +-.++   +.+..  .+++||+|.|.++|.|..
T Consensus        23 ~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~----~i~~a~~~~~~~~~~~~---~~~~~~~~~~~fD~I~~~~vleh~~   95 (225)
T d2p7ia1          23 NLLELGSFKGDFTSRLQEHFNDITCVEASEE----AISHAQGRLKDGITYIH---SRFEDAQLPRRYDNIVLTHVLEHID   95 (225)
T ss_dssp             CEEEESCTTSHHHHHHTTTCSCEEEEESCHH----HHHHHHHHSCSCEEEEE---SCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred             cEEEEeCCCcHHHHHHHHcCCeEEEEeCcHH----Hhhhhhccccccccccc---ccccccccccccccccccceeEecC
Confidence            5999999999999999987  5777766543    4555544422  11222   23333  359999999999999887


Q ss_pred             cccchhHHHHhh-hhcccCCcEEEEe
Q 027471          147 KRCSLKAVVAEV-DRILRPDGNLILR  171 (223)
Q Consensus       147 ~rC~i~~vl~E~-DRILRPgG~~ii~  171 (223)
                      +.   ..+|.|+ +|+|||||.++++
T Consensus        96 d~---~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          96 DP---VALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             SH---HHHHHHHHHTTEEEEEEEEEE
T ss_pred             CH---HHHHHHHHHHhcCCCceEEEE
Confidence            63   5888898 4999999999997

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.08  E-value=1.5e-11  Score=95.24  Aligned_cols=105  Identities=9%  Similarity=0.046  Sum_probs=70.8

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhh----Cccc----------c-cccc
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYER----GLFG----------L-YHDW  122 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eR----GLi~----------~-~~dw  122 (223)
                      |+..|.+.++  ..|||+|||.|..|.+|++++  |+.+++++.    .+..+.+|    +..-          . ..-.
T Consensus        12 ~~~~l~~~~~--~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~----~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (201)
T d1pjza_          12 YWSSLNVVPG--ARVLVPLCGKSQDMSWLSGQGYHVVGAELSEA----AVERYFTERGEQPHITSQGDFKVYAAPGIEIW   85 (201)
T ss_dssp             HHHHHCCCTT--CEEEETTTCCSHHHHHHHHHCCEEEEEEECHH----HHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred             HHHHcCCCCC--CEEEEecCcCCHHHHHHHHcCCceEeecccHH----HHHHHHHHhccccchhhhhhhhhcccccccee
Confidence            6666766554  589999999999999999885  566666554    34444433    1110          0 0001


Q ss_pred             ccc-CCC--CC-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          123 CES-FNT--YP-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       123 ce~-f~t--yP-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      |.. +..  ++ .+||+|.+..+|.+... .....++.++-|.|+|||.+++.
T Consensus        86 ~~d~~~l~~~~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~  137 (201)
T d1pjza_          86 CGDFFALTARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLI  137 (201)
T ss_dssp             EECCSSSTHHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             cccccccccccccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEE
Confidence            112 222  34 78999999988887654 33468999999999999998875

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.6e-10  Score=94.39  Aligned_cols=121  Identities=12%  Similarity=0.001  Sum_probs=78.4

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhh----Cc--------------cccc-------
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYER----GL--------------FGLY-------  119 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eR----GL--------------i~~~-------  119 (223)
                      ...-..|||+|||.|.++..+++.   .|+.+.++|..    ++.+.++    +.              -|.+       
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~----i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRN----REELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE  124 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHH----HHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHH----HHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHH
Confidence            345678999999999998888766   35666766543    2222111    11              0000       


Q ss_pred             ------------ccccc--cCCCCC-cchhhhhhhhhhccccc-ccchhHHHHhhhhcccCCcEEEEeccHH--------
Q 027471          120 ------------HDWCE--SFNTYP-RTYDLLHADHLFSTIKK-RCSLKAVVAEVDRILRPDGNLILRDDAE--------  175 (223)
Q Consensus       120 ------------~dwce--~f~tyP-rtyDllH~~~lfs~~~~-rC~i~~vl~E~DRILRPgG~~ii~D~~~--------  175 (223)
                                  .+-+.  ....++ .+||+|.|..++++... +-....++.++.|+|||||++|+.+...        
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~  204 (257)
T d2a14a1         125 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGK  204 (257)
T ss_dssp             HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT
T ss_pred             HHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecc
Confidence                        00001  112244 89999999888877642 3345689999999999999999985321        


Q ss_pred             --------HHHHHHHHHHhCCCeeE
Q 027471          176 --------TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       176 --------~~~~i~~i~~~l~W~~~  192 (223)
                              ..+.++++++.--+++.
T Consensus       205 ~~~~~~~~~~~~~~~~l~~aGf~v~  229 (257)
T d2a14a1         205 REFSCVALEKGEVEQAVLDAGFDIE  229 (257)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred             ccccccCCCHHHHHHHHHHCCCEEE
Confidence                    25778888888777654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.06  E-value=2.5e-11  Score=103.49  Aligned_cols=101  Identities=10%  Similarity=0.111  Sum_probs=69.4

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc-ccccccccCCCCCcchhhhhhhhhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADHLF  142 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~tyPrtyDllH~~~lf  142 (223)
                      .+-.+|||+|||+|.++..|++.     .|+.+.+++..-....+...+.|+-- ..+.-.+.++ ++.+||+|+|.++|
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~-~~~~fD~v~~~~~l  104 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-LNDKYDIAICHAFL  104 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-CSSCEEEEEEESCG
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc-ccCCceEEEEehhh
Confidence            34578999999999999888763     36667765542221222233345422 2221122232 46889999999999


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      .+..+.   +.+|.|+.|+|||||.+++.|+
T Consensus       105 ~~~~d~---~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1         105 LHMTTP---ETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             GGCSSH---HHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hcCCCH---HHHHHHHHHHcCcCcEEEEEEC
Confidence            988763   5899999999999999998753

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.05  E-value=2e-11  Score=100.52  Aligned_cols=113  Identities=18%  Similarity=0.309  Sum_probs=75.6

Q ss_pred             hhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHh----hCcccccccc
Q 027471           49 YQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYE----RGLFGLYHDW  122 (223)
Q Consensus        49 ~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~e----RGLi~~~~dw  122 (223)
                      .+.|.+.+.+ ++...+++   -++|||+|||+|.++..|++++  |+.+.+++.    .++.+.+    .|+.-.+.  
T Consensus        20 y~~~~~~~~~-~~~~~~~~---~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~----ml~~A~~~~~~~~~~v~~~--   89 (246)
T d1y8ca_          20 YKKWSDFIIE-KCVENNLV---FDDYLDLACGTGNLTENLCPKFKNTWAVDLSQE----MLSEAENKFRSQGLKPRLA--   89 (246)
T ss_dssp             HHHHHHHHHH-HHHTTTCC---TTEEEEETCTTSTTHHHHGGGSSEEEEECSCHH----HHHHHHHHHHHTTCCCEEE--
T ss_pred             HHHHHHHHHH-HHHHhCCC---CCeEEEEeCcCCHHHHHHHHhCCccEeeccchh----hhhhccccccccCccceee--
Confidence            3456666655 44433322   3579999999999999999986  444444333    4444443    46533222  


Q ss_pred             cccCCCC--Ccchhhhhhh-hhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          123 CESFNTY--PRTYDLLHAD-HLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       123 ce~f~ty--PrtyDllH~~-~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      |+.+..+  +++||+|=|. +.|++..+.-.+..+|-++.|.|+|||.|+++
T Consensus        90 ~~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          90 CQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             CCCGGGCCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ccchhhhcccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            3444443  4899998764 67777665555678999999999999999985

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.03  E-value=2e-11  Score=103.29  Aligned_cols=106  Identities=21%  Similarity=0.269  Sum_probs=77.6

Q ss_pred             CCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccc-cCCCCCcchhhhhhhh
Q 027471           66 INWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCE-SFNTYPRTYDLLHADH  140 (223)
Q Consensus        66 i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce-~f~tyPrtyDllH~~~  140 (223)
                      ++.+..++|||+|||.|.++++|+++    .++++++ |.......+.+.+.|+..-+.--.. .|...|..||++.+.+
T Consensus        77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~  155 (256)
T d1qzza2          77 YDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF  155 (256)
T ss_dssp             SCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEES
T ss_pred             CCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccc
Confidence            45678899999999999999999876    4566665 3322334555667777542221112 4444678899999999


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      +|+++.+. ....+|.++-|+|||||.++|.|.
T Consensus       156 vLh~~~d~-~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         156 VLLNWSDE-DALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             CGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccccCcH-HHHHHHHHHHhhcCCcceeEEEEe
Confidence            99988752 236889999999999999999865

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.99  E-value=1.1e-10  Score=100.07  Aligned_cols=128  Identities=18%  Similarity=0.198  Sum_probs=84.7

Q ss_pred             eEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcccccccccccCC-CCC-cchhhhhhhhhhccccc
Q 027471           72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN-TYP-RTYDLLHADHLFSTIKK  147 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~-tyP-rtyDllH~~~lfs~~~~  147 (223)
                      .+|||+|||+|.++.++++.  .|+.+.++|..-....+-+...|+-..+.  +..+. .+| .+||+|.|..++.    
T Consensus       122 ~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~--~~d~~~~~~~~~fD~V~ani~~~----  195 (254)
T d2nxca1         122 DKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFL--EGSLEAALPFGPFDLLVANLYAE----  195 (254)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEE--ESCHHHHGGGCCEEEEEEECCHH----
T ss_pred             CEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEE--eccccccccccccchhhhccccc----
Confidence            47999999999999888776  45666766664443444444566643222  12222 255 8999998753322    


Q ss_pred             ccchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471          148 RCSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK  207 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K  207 (223)
                        .+..++-++.|+|||||++++++-.. ..+.+.+.++...|+.....+++.-..|+.+|
T Consensus       196 --~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~~~Wv~l~~~r  254 (254)
T d2nxca1         196 --LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR  254 (254)
T ss_dssp             --HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEC
T ss_pred             --cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEECCEEEEEEeC
Confidence              24578889999999999999986433 35678888888888875444444444455544

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.97  E-value=1e-10  Score=97.26  Aligned_cols=98  Identities=15%  Similarity=0.172  Sum_probs=66.9

Q ss_pred             eEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhh----Cccc---ccccccccCCC-CCcchhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYER----GLFG---LYHDWCESFNT-YPRTYDLLHADH  140 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eR----GLi~---~~~dwce~f~t-yPrtyDllH~~~  140 (223)
                      .+|||+|||+|+++..+++.+   |+.+.+++.    .++.+.+|    +...   .+..-+...+. ...+||+|.|..
T Consensus        26 ~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~----~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          26 DSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEV----SINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             CEEEEETCTTTTTHHHHHHHTCSEEEEEESCHH----HHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CEEEEecccCcHHHHHHHHcCCCeEEEecCCHH----HHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            579999999999999987754   556666554    55555444    3321   12211112222 237999999988


Q ss_pred             hhcccc-cccchhHHHHhhhhcccCCcEEEEecc
Q 027471          141 LFSTIK-KRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       141 lfs~~~-~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      ++++.- +.-.+..+|.++.|+|||||+||++-.
T Consensus       102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_         102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            887763 333466899999999999999999743

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=8.3e-11  Score=99.73  Aligned_cols=93  Identities=14%  Similarity=0.118  Sum_probs=63.5

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC--CeEE--EEecCCCCCCChhhHHhhCc-ccccccccccCCCCCcchhhhhhhhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL--KVWV--MNVVPIESPDTLPIIYERGL-FGLYHDWCESFNTYPRTYDLLHADHLF  142 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~--~V~v--mnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~tyPrtyDllH~~~lf  142 (223)
                      ..+-.+|||+|||.|.++.+|++.  ++.+  +.+++    ..++.+.+++- +.....-.+.++.-+.+||+|.|...+
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~----~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~  157 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK----VAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP  157 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCH----HHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchH----hhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCH
Confidence            345678999999999999999876  4444  45443    25666666542 122222234555445999999886433


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRDDA  174 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~  174 (223)
                      .          .+.|+.|||||||++++..+.
T Consensus       158 ~----------~~~e~~rvLkpgG~l~~~~p~  179 (268)
T d1p91a_         158 C----------KAEELARVVKPGGWVITATPG  179 (268)
T ss_dssp             C----------CHHHHHHHEEEEEEEEEEEEC
T ss_pred             H----------HHHHHHHHhCCCcEEEEEeeC
Confidence            2          267999999999999998543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=4.9e-11  Score=98.70  Aligned_cols=112  Identities=13%  Similarity=0.191  Sum_probs=69.1

Q ss_pred             hHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhC----c--cccccc
Q 027471           51 HWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERG----L--FGLYHD  121 (223)
Q Consensus        51 ~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRG----L--i~~~~d  121 (223)
                      .|.+...+...+.+. .  .-.+|||+|||+|.+|.+|+++   .|+++.++|.    .++.+.++.    .  ....++
T Consensus        37 ~w~~~~~~~la~~~~-~--~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~----~~~~a~~~~~~~~~~~~~~~~~  109 (229)
T d1zx0a1          37 RWETPYMHALAAAAS-S--KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDG----VFQRLRDWAPRQTHKVIPLKGL  109 (229)
T ss_dssp             GGGHHHHHHHHHHHT-T--TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHH----HHHHHHHHGGGCSSEEEEEESC
T ss_pred             HHHHHHHHHHHHhhc-c--CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHH----HHHHHHHHhhhccccccccccc
Confidence            376655442223332 2  2468999999999999999887   3666777655    444443332    2  113444


Q ss_pred             ccccCCCCC-cchhhhh-----hhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          122 WCESFNTYP-RTYDLLH-----ADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       122 wce~f~tyP-rtyDllH-----~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +.+....+| .+||++-     +.....+..   ..+.++.|+-|+|||||.|++.+
T Consensus       110 ~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~---~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         110 WEDVAPTLPDGHFDGILYDTYPLSEETWHTH---QFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             HHHHGGGSCTTCEEEEEECCCCCBGGGTTTH---HHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ccccccccccccccceeeccccccccccccc---CHHHHHHHHHHHcCCCcEEEEEe
Confidence            444444555 6666643     333333322   34589999999999999999853

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6e-10  Score=93.31  Aligned_cols=94  Identities=12%  Similarity=0.231  Sum_probs=60.9

Q ss_pred             EEEeeCCchHHHHHHhhCC------C--eEEEEecCCCCCCChhhHHhh-----Ccccccccccc-cC--------CCCC
Q 027471           73 NVMDMRAVYGGFAAALKDL------K--VWVMNVVPIESPDTLPIIYER-----GLFGLYHDWCE-SF--------NTYP  130 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~------~--V~vmnv~p~~~~~~l~~i~eR-----GLi~~~~dwce-~f--------~tyP  130 (223)
                      +|||+|||+|.|+..|++.      +  +.+.-|-|.  +..++.+.+|     .+..+-.+|.. .+        ..++
T Consensus        43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPS--AEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCC--HHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCc--HHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence            6999999999998777543      2  222222111  1234444333     22222222211 11        2244


Q ss_pred             -cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          131 -RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       131 -rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                       .+||+|+|.++|.+..+   .+.+|.++.|+|+|||.+++.
T Consensus       121 ~~~fD~I~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~i~  159 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLII  159 (280)
T ss_dssp             CCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCceeEEEEccceecCCC---HHHHHHHHHhhCCCCCEEEEE
Confidence             99999999999998765   469999999999999999887

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.84  E-value=3.1e-10  Score=94.07  Aligned_cols=117  Identities=6%  Similarity=0.034  Sum_probs=75.5

Q ss_pred             eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccc--cccccccC-CCCC-cchhhhhhhhhhc
Q 027471           72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGL--YHDWCESF-NTYP-RTYDLLHADHLFS  143 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~--~~dwce~f-~tyP-rtyDllH~~~lfs  143 (223)
                      ..|||+|||.|.|+..|+++    .+..+.+.+..-....+.+.++||-.+  ++.-...+ ..+| .++|.+++....-
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P  110 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP  110 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence            46999999999999999765    344455444333345667788898542  22111112 2266 8999877653332


Q ss_pred             ccc----cccch-hHHHHhhhhcccCCcEEEE-eccHHHHHHHHHHHHhCC
Q 027471          144 TIK----KRCSL-KAVVAEVDRILRPDGNLIL-RDDAETIVEVEDLVKSLH  188 (223)
Q Consensus       144 ~~~----~rC~i-~~vl~E~DRILRPgG~~ii-~D~~~~~~~i~~i~~~l~  188 (223)
                      ..+    .+..+ +.+|.|+.|+|+|||.+.| ||.....+.+...+....
T Consensus       111 ~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~  161 (204)
T d2fcaa1         111 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG  161 (204)
T ss_dssp             CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             cchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCC
Confidence            221    12222 4799999999999999977 577777777766655433

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=2.8e-10  Score=96.47  Aligned_cols=103  Identities=14%  Similarity=0.182  Sum_probs=64.4

Q ss_pred             CceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccc-------ccccc-CCC-CCcchhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYH-------DWCES-FNT-YPRTYDLLHA  138 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~-------dwce~-f~t-yPrtyDllH~  138 (223)
                      ..++|||+|||+|.++..|++++  |+.+.++|..-....+...+++......       +|-.. ... +..+||+|-|
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~  135 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC  135 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEE
Confidence            35689999999999999999985  5556555542111122223344432211       11000 011 3378999887


Q ss_pred             h-hhhccccc----ccchhHHHHhhhhcccCCcEEEEec
Q 027471          139 D-HLFSTIKK----RCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       139 ~-~lfs~~~~----rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      . ..|.+..+    .-.+..+|.|+.|+|||||.||++-
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         136 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             CSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            4 46666542    1234579999999999999999963

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.79  E-value=1.6e-09  Score=89.67  Aligned_cols=121  Identities=13%  Similarity=0.115  Sum_probs=79.2

Q ss_pred             eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCC-CCC-cchhhhhhhhhhc
Q 027471           72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFN-TYP-RTYDLLHADHLFS  143 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~-tyP-rtyDllH~~~lfs  143 (223)
                      ..|||+|||.|.|...|++.    .+..+.+.+......+..+.+.|+-.  +++.-.+.|. .+| .++|.||+..---
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdP  112 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDP  112 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCC
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccccc
Confidence            47999999999999999765    34555554433333566677888844  3332222233 366 9999988642211


Q ss_pred             -----ccccccchhHHHHhhhhcccCCcEEEE-eccHHHHHHHHHHHHhCCCeeE
Q 027471          144 -----TIKKRCSLKAVVAEVDRILRPDGNLIL-RDDAETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       144 -----~~~~rC~i~~vl~E~DRILRPgG~~ii-~D~~~~~~~i~~i~~~l~W~~~  192 (223)
                           |.+.|=--+.+|-++.|+|+|||.++| ||..+..+.+........+...
T Consensus       113 w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~  167 (204)
T d1yzha1         113 WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN  167 (204)
T ss_dssp             CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred             ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcccc
Confidence                 222222224889999999999999977 6777777776666666666543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.77  E-value=1.8e-09  Score=90.99  Aligned_cols=136  Identities=18%  Similarity=0.274  Sum_probs=85.0

Q ss_pred             cCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc-ccccccccCCCCC---cchh
Q 027471           64 MGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYP---RTYD  134 (223)
Q Consensus        64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~tyP---rtyD  134 (223)
                      |++++  --+|||+|||.|+++.+|++.     .|+.+.++|.......+.+..++.+- +..|- .....|+   ..+|
T Consensus        69 l~i~p--G~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~-~~~~~~~~~~~~vD  145 (227)
T d1g8aa_          69 FPIKP--GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA-TKPEEYRALVPKVD  145 (227)
T ss_dssp             CCCCT--TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT-TCGGGGTTTCCCEE
T ss_pred             cccCC--CCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEEC-CCcccccccccceE
Confidence            34444  468999999999999999864     48888888776555555565666543 33331 1222233   5677


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec----------cHHHHHHHHHHHHhCCCeeE-Eee--c-CCCe
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD----------DAETIVEVEDLVKSLHWDVR-MIY--T-NDNQ  200 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D----------~~~~~~~i~~i~~~l~W~~~-~~~--~-~~~e  200 (223)
                      .++++  +.+.   -....++.++.|+|||||.+++..          +.++...++++.+. .++.. ..+  . +.+.
T Consensus       146 ~i~~d--~~~~---~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~p~~~~H  219 (227)
T d1g8aa_         146 VIFED--VAQP---TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLEPYEKDH  219 (227)
T ss_dssp             EEEEC--CCST---THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECTTTSSSE
T ss_pred             EEEEE--cccc---chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCCCce
Confidence            77654  1111   123478999999999999999862          23344566666543 45543 111  1 2345


Q ss_pred             eEEEEEec
Q 027471          201 GMLCVHKT  208 (223)
Q Consensus       201 ~~L~~~K~  208 (223)
                      -+++++|+
T Consensus       220 ~~vv~rK~  227 (227)
T d1g8aa_         220 ALFVVRKT  227 (227)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            77888885

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.74  E-value=6.8e-10  Score=93.43  Aligned_cols=124  Identities=13%  Similarity=0.112  Sum_probs=79.4

Q ss_pred             ccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc-ccccccccCCCCC-cchhhh
Q 027471           63 GMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYP-RTYDLL  136 (223)
Q Consensus        63 ~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~tyP-rtyDll  136 (223)
                      .|++++  --+|||+|||+|.++..|++.    .|+.+.++|.......+.+..|+.+- +..|.. ....|+ .++|++
T Consensus        69 ~l~ikp--G~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~-~~~~~~~~~~~v~  145 (230)
T d1g8sa_          69 VMPIKR--DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDAN-KPQEYANIVEKVD  145 (230)
T ss_dssp             CCCCCT--TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTT-CGGGGTTTCCCEE
T ss_pred             hCCCCC--CCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeec-cCcccccccceeE
Confidence            344444  467999999999999999865    48889998875544444555566544 444433 333344 666664


Q ss_pred             hhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc----------HHHHHHHHHHHHhCCCeeE
Q 027471          137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD----------AETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~----------~~~~~~i~~i~~~l~W~~~  192 (223)
                      .+...+++.   ...+.++.|+.|+|||||++++.+.          .....++.+.++.-..+..
T Consensus       146 ~i~~~~~~~---~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~iv  208 (230)
T d1g8sa_         146 VIYEDVAQP---NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIV  208 (230)
T ss_dssp             EEEECCCST---THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEE
T ss_pred             Eeeccccch---HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            443333332   3346889999999999999999732          2234555555555555543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.74  E-value=1.1e-09  Score=90.57  Aligned_cols=105  Identities=12%  Similarity=0.183  Sum_probs=70.6

Q ss_pred             cCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhh
Q 027471           64 MGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHAD  139 (223)
Q Consensus        64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~  139 (223)
                      |++++|  -+|||+|||.|+++.+|.+.    .|+.+.++|..-....+.+-.++.+..+..-++....|+..+|.+-+ 
T Consensus        52 l~lkpg--~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~-  128 (209)
T d1nt2a_          52 LKLRGD--ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDL-  128 (209)
T ss_dssp             CCCCSS--CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEE-
T ss_pred             CCCCCC--CEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEE-
Confidence            445554  48999999999998888763    37888887765544455566677665554334444556666554332 


Q ss_pred             hhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                       +|+...+......++.|+.|+|||||++++.+
T Consensus       129 -v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         129 -IYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             -EEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -EEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence             33333233344689999999999999999874

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.5e-09  Score=86.12  Aligned_cols=116  Identities=13%  Similarity=0.047  Sum_probs=74.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCCCeE--EEEecCCCCCCChhhHHhh-Cccc-------------------ccccccccC--
Q 027471           71 VRNVMDMRAVYGGFAAALKDLKVW--VMNVVPIESPDTLPIIYER-GLFG-------------------LYHDWCESF--  126 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~V~--vmnv~p~~~~~~l~~i~eR-GLi~-------------------~~~dwce~f--  126 (223)
                      -..|||+|||.|-.+.+|++++--  .+.++|.    .++.+.++ +..+                   -+.-.|..+  
T Consensus        46 ~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~----ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          46 GLRVFFPLCGKAVEMKWFADRGHSVVGVEISEL----GIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             SCEEEETTCTTCTHHHHHHHTTCEEEEECSCHH----HHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHH----HHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            357999999999999999999654  4455443    23222221 1000                   011112222  


Q ss_pred             --CCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc----HH--------HHHHHHHHHHhCCCeeE
Q 027471          127 --NTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD----AE--------TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       127 --~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~----~~--------~~~~i~~i~~~l~W~~~  192 (223)
                        +..+.+||+|....+|.+... -..+.++.+|-|+|||||.+++...    ..        ..+++++++.. .|++.
T Consensus       122 l~~~~~~~fd~i~~~~~l~~~~~-~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~  199 (229)
T d2bzga1         122 LPRTNIGKFDMIWDRGALVAINP-GDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIR  199 (229)
T ss_dssp             GGGSCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred             ccccccCceeEEEEEEEEEeccc-hhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEEE
Confidence              224489999999888887753 2356899999999999998877611    10        24678888766 46654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.66  E-value=1e-09  Score=90.67  Aligned_cols=101  Identities=13%  Similarity=0.164  Sum_probs=64.9

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC--cc
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP--RT  132 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP--rt  132 (223)
                      .++.|++++|.  +|||+|||+|.+++.|++.     .|+++...|.......+.+...|+-....-.+.....+|  .+
T Consensus        67 ~l~~l~l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~  144 (213)
T d1dl5a1          67 FMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (213)
T ss_dssp             HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHhhhccccc--eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccc
Confidence            45667776654  8999999999999888643     377776655433323333444455433322222334444  78


Q ss_pred             hhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          133 YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       133 yDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ||.|++...+.+.         .-++-|.|||||.+++-
T Consensus       145 fD~I~~~~~~~~~---------p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         145 YDVIFVTVGVDEV---------PETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             EEEEEECSBBSCC---------CHHHHHHEEEEEEEEEE
T ss_pred             hhhhhhhccHHHh---------HHHHHHhcCCCcEEEEE
Confidence            9999998655433         23455789999999984

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=4e-09  Score=91.39  Aligned_cols=99  Identities=11%  Similarity=0.063  Sum_probs=69.8

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CC-cchhhhhhhhhhcc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YP-RTYDLLHADHLFST  144 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yP-rtyDllH~~~lfs~  144 (223)
                      -.+|||+|||+|.++..+++.+   |.++..++ ......+.+.+.|+...+.--+.....  +| ..||+|-|..+++.
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~  117 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF  117 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEeccee
Confidence            3579999999999888887664   55565543 122356677888886533322234443  44 89999998766665


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEE
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLIL  170 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii  170 (223)
                      ....-.++.++.+++|+|+|||.+|=
T Consensus       118 ~~~e~~~~~~~~a~~r~LkpgG~iiP  143 (328)
T d1g6q1_         118 LLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             BSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eccchhHHHHHHHHHhccCCCeEEEe
Confidence            55545567899999999999999873

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=6.8e-09  Score=89.63  Aligned_cols=100  Identities=18%  Similarity=0.173  Sum_probs=69.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CC-cchhhhhhhhhhcc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YP-RTYDLLHADHLFST  144 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yP-rtyDllH~~~lfs~  144 (223)
                      -.+|||+|||+|.++-.+++.   .|+.+..++. .....+.+...|+...+.-.|+....  .| ..||+|-|..+.+.
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~  112 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC  112 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred             cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence            357999999999987777665   3666665443 22355666677875533332333333  34 89999988766665


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEe
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ..+...++.++.+++|+|+|||.+|-.
T Consensus       113 l~~e~~~~~~l~~~~r~Lkp~G~iiP~  139 (316)
T d1oria_         113 LFYESMLNTVLHARDKWLAPDGLIFPD  139 (316)
T ss_dssp             BTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             eccHHHHHHHHHHHHhcCCCCeEEEee
Confidence            555566889999999999999999843

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=6.7e-09  Score=89.01  Aligned_cols=100  Identities=14%  Similarity=0.086  Sum_probs=68.5

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CC-cchhhhhhhhhhcc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YP-RTYDLLHADHLFST  144 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yP-rtyDllH~~~lfs~  144 (223)
                      -.+|||+|||+|.++..+++.+   |..+..++.. ....+.+.+.|+..-+.-.++....  +| ..||+|-|..+++.
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~-~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~  114 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEIL-YQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF  114 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHH-HHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred             cCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHH-HHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeee
Confidence            4579999999999988887764   5555554321 1245666777775433222233333  44 89999998766665


Q ss_pred             cccccchhHHHHhhhhcccCCcEEEEe
Q 027471          145 IKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       145 ~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ....-.++.++..++|.|||||.+|-.
T Consensus       115 ~~~e~~~~~~~~a~~~~Lkp~G~iip~  141 (311)
T d2fyta1         115 LLFESMLDSVLYAKNKYLAKGGSVYPD  141 (311)
T ss_dssp             BTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             cccccccHHHHHHHHhcCCCCcEEecc
Confidence            554445678888899999999999853

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.58  E-value=1.4e-08  Score=81.10  Aligned_cols=123  Identities=18%  Similarity=0.179  Sum_probs=79.9

Q ss_pred             hhccCCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCC-cchh
Q 027471           61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYP-RTYD  134 (223)
Q Consensus        61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyP-rtyD  134 (223)
                      +..|++..+  ..|||+|||+|.++.+|+.+  .|+.+.+.|.......+-+...|+..   +++.....+. ++ ..||
T Consensus        26 l~~l~~~~g--~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~-~~~~~~D  102 (186)
T d1l3ia_          26 MCLAEPGKN--DVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL-CKIPDID  102 (186)
T ss_dssp             HHHHCCCTT--CEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH-TTSCCEE
T ss_pred             HHhcCCCCC--CEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc-cccCCcC
Confidence            344555544  57999999999999999887  46666655543333444455567642   3332111111 33 7899


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc-HHHHHHHHHHHHhCCCeeE
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~-~~~~~~i~~i~~~l~W~~~  192 (223)
                      ++-+...-      -.++.++.++.|.|||||++++... .+....+.+.++...++..
T Consensus       103 ~v~~~~~~------~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~  155 (186)
T d1l3ia_         103 IAVVGGSG------GELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN  155 (186)
T ss_dssp             EEEESCCT------TCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred             EEEEeCcc------ccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence            88765321      1356899999999999999999864 3455667777777777544

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.1e-08  Score=85.92  Aligned_cols=63  Identities=24%  Similarity=0.400  Sum_probs=48.2

Q ss_pred             Ccchhhhhhhhhhcccc-cccchhHHHHhhhhcccCCcEEEEeccHH----------------HHHHHHHHHHhCCCeeE
Q 027471          130 PRTYDLLHADHLFSTIK-KRCSLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       130 PrtyDllH~~~lfs~~~-~rC~i~~vl~E~DRILRPgG~~ii~D~~~----------------~~~~i~~i~~~l~W~~~  192 (223)
                      +..||+|-|..++++.. ++..+..+|-++.|+|||||++|+.+...                ..+.|+++++.---++.
T Consensus       155 ~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~  234 (263)
T d2g72a1         155 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVR  234 (263)
T ss_dssp             CSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred             cCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEE
Confidence            47899999887777664 55678899999999999999999974311                24678888777666653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.39  E-value=4.3e-08  Score=83.70  Aligned_cols=95  Identities=14%  Similarity=0.138  Sum_probs=59.7

Q ss_pred             ccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHh---h-Cccc----ccccccccCCCC
Q 027471           63 GMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYE---R-GLFG----LYHDWCESFNTY  129 (223)
Q Consensus        63 ~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~e---R-GLi~----~~~dwce~f~ty  129 (223)
                      .++|.+|  .+|||+|||+|+++.+|+..     .|......+.    .++.+.+   + +...    ...|.++.+  .
T Consensus        80 ~l~i~pG--~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~----~~~~A~~n~~~~~~~~nv~~~~~Di~~~~--~  151 (250)
T d1yb2a1          80 RCGLRPG--MDILEVGVGSGNMSSYILYALNGKGTLTVVERDED----NLKKAMDNLSEFYDIGNVRTSRSDIADFI--S  151 (250)
T ss_dssp             -CCCCTT--CEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHH----HHHHHHHHHHTTSCCTTEEEECSCTTTCC--C
T ss_pred             HcCCCCc--CEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHH----HHHHHHHHHHHhcCCCceEEEEeeeeccc--c
Confidence            3446665  57999999999998888753     3555544322    3333332   2 4333    233444332  2


Q ss_pred             CcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          130 PRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       130 PrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      +.+||.|.++     ..   .-..++-++.|+|||||.+++.-+
T Consensus       152 ~~~fD~V~ld-----~p---~p~~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         152 DQMYDAVIAD-----IP---DPWNHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             SCCEEEEEEC-----CS---CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             cceeeeeeec-----CC---chHHHHHHHHHhcCCCceEEEEeC
Confidence            3889988654     11   123789999999999999998644

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.33  E-value=7.3e-08  Score=82.55  Aligned_cols=119  Identities=13%  Similarity=0.101  Sum_probs=72.3

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccC-CCCC-cchh
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF-NTYP-RTYD  134 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f-~tyP-rtyD  134 (223)
                      ..|++.+|  -+|||+|||.|+++++|+..     .|+.+.+.|.......+.+-..|+...+.--+..+ ..++ ..||
T Consensus        97 ~~l~i~pG--~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D  174 (266)
T d1o54a_          97 MMLDVKEG--DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVD  174 (266)
T ss_dssp             HHTTCCTT--CEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEE
T ss_pred             HhhCCCCC--CEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccccccee
Confidence            44556555  57999999999999888643     36666665543333334444557654222111121 2244 6677


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhCCCe
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHWD  190 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l~W~  190 (223)
                      .+..+     .   .....+|-++.|+|||||.+++- -..+.+.++-+.++...|.
T Consensus       175 ~V~~d-----~---p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~  223 (266)
T d1o54a_         175 ALFLD-----V---PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI  223 (266)
T ss_dssp             EEEEC-----C---SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred             eeEec-----C---CCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence            65432     2   33458999999999999999875 3444445555555555664

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.13  E-value=1.4e-06  Score=73.31  Aligned_cols=91  Identities=14%  Similarity=0.254  Sum_probs=67.5

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc---cc-ccccccccCCCCCcchhhhhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL---FG-LYHDWCESFNTYPRTYDLLHAD  139 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL---i~-~~~dwce~f~tyPrtyDllH~~  139 (223)
                      ...++.|+|+|||.|.++++++++    .++++++-++        +.+.+.   +. +-+|   -|...|. .|++.+.
T Consensus        79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~v--------i~~~~~~~ri~~~~gd---~~~~~p~-~D~~~l~  146 (244)
T d1fp1d2          79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQV--------IENAPPLSGIEHVGGD---MFASVPQ-GDAMILK  146 (244)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH--------HTTCCCCTTEEEEECC---TTTCCCC-EEEEEEE
T ss_pred             ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhh--------hhccCCCCCeEEecCC---ccccccc-ceEEEEe
Confidence            567999999999999999999876    5666765222        212222   11 3344   4555663 4999999


Q ss_pred             hhhccccc-ccchhHHHHhhhhcccCCcEEEEec
Q 027471          140 HLFSTIKK-RCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       140 ~lfs~~~~-rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      ++++.|.+ .|  ..+|..+.+.|+|||.++|.|
T Consensus       147 ~vLh~~~de~~--~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         147 AVCHNWSDEKC--IEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             SSGGGSCHHHH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhCCHHHH--HHHHHHHHHHcCCCcEEEEEE
Confidence            99999975 34  689999999999999999975

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.10  E-value=2e-07  Score=80.24  Aligned_cols=115  Identities=17%  Similarity=0.090  Sum_probs=68.8

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHh---h---CcccccccccccCC--C
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYE---R---GLFGLYHDWCESFN--T  128 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~e---R---GLi~~~~dwce~f~--t  128 (223)
                      ..|++.+|  -+|||+|||.|+++.+|+..     .|+...+.+.    .++.+.+   +   +...-++..+..+.  .
T Consensus        90 ~~l~i~PG--~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~----~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~  163 (264)
T d1i9ga_          90 HEGDIFPG--ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRAD----HAEHARRNVSGCYGQPPDNWRLVVSDLADSE  163 (264)
T ss_dssp             HHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHH----HHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred             HHhCCCCC--CEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHH----HHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence            45566665  58999999999999998754     4666655432    3333322   2   22222222333333  2


Q ss_pred             CC-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec-cHHH-HHHHHHHHHhCCCe
Q 027471          129 YP-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD-DAET-IVEVEDLVKSLHWD  190 (223)
Q Consensus       129 yP-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D-~~~~-~~~i~~i~~~l~W~  190 (223)
                      +| .+||.|.++     ..+   -..++-++.|+|||||.+++-. ..+. ...++.+-..-.|.
T Consensus       164 ~~~~~fDaV~ld-----lp~---P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~  220 (264)
T d1i9ga_         164 LPDGSVDRAVLD-----MLA---PWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT  220 (264)
T ss_dssp             CCTTCEEEEEEE-----SSC---GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred             ccCCCcceEEEe-----cCC---HHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence            55 899987543     222   1378999999999999998753 3333 33444443344464

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.6e-07  Score=78.02  Aligned_cols=102  Identities=18%  Similarity=0.127  Sum_probs=57.6

Q ss_pred             hhccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc----cccccccc-CCCCC
Q 027471           61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCES-FNTYP  130 (223)
Q Consensus        61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~-f~tyP  130 (223)
                      ++.|...-..--+|||+|||+|-++|.|++.     .|+.+...+.......+.+...++..    .+.-.|+. +..++
T Consensus        67 le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~  146 (224)
T d1i1na_          67 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA  146 (224)
T ss_dssp             HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG
T ss_pred             HHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc
Confidence            3445322233457999999999888777643     46666554432222222233334321    11111122 22233


Q ss_pred             --cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          131 --RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       131 --rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                        ..||.|++.....         .+..++=|.|+|||.+|+-
T Consensus       147 ~~~~fD~I~~~~~~~---------~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         147 EEAPYDAIHVGAAAP---------VVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             GGCCEEEEEECSBBS---------SCCHHHHHTEEEEEEEEEE
T ss_pred             hhhhhhhhhhhcchh---------hcCHHHHhhcCCCcEEEEE
Confidence              7899999974433         3344566899999999984

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=6.2e-07  Score=78.92  Aligned_cols=116  Identities=15%  Similarity=0.155  Sum_probs=63.4

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHH---hh-----------Cc---cc-c
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIY---ER-----------GL---FG-L  118 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~---eR-----------GL---i~-~  118 (223)
                      ..|+|.+|.  .|||+|||.|+++.+|+..     .|+.+.+.+.    .++.+.   ++           +.   +- .
T Consensus        92 ~~l~i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~----~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~  165 (324)
T d2b25a1          92 SMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKD----HHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  165 (324)
T ss_dssp             HHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHH----HHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HHhCCCCCC--EEEEecccccHHHHHHHHHhCCCcEEEEecCCHH----HHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence            456677764  7999999999999888753     3666665433    222221   11           11   11 2


Q ss_pred             cccccccCCCCC-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHH-HHHH-HHhCCCee
Q 027471          119 YHDWCESFNTYP-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVE-VEDL-VKSLHWDV  191 (223)
Q Consensus       119 ~~dwce~f~tyP-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~-i~~i-~~~l~W~~  191 (223)
                      ..|.|+....++ ..||.|..+     ..+   -..+|-++-|+|||||.+++- -....+.+ ++.| ...+.|..
T Consensus       166 ~~di~~~~~~~~~~~fD~V~LD-----~p~---P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~  234 (324)
T d2b25a1         166 HKDISGATEDIKSLTFDAVALD-----MLN---PHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSC  234 (324)
T ss_dssp             ESCTTCCC-------EEEEEEC-----SSS---TTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEE
T ss_pred             ecchhhcccccCCCCcceEeec-----CcC---HHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCcee
Confidence            234444333344 778876542     111   125789999999999999864 33333333 3333 22456754

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.99  E-value=4.2e-07  Score=75.10  Aligned_cols=99  Identities=20%  Similarity=0.199  Sum_probs=64.4

Q ss_pred             CceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCC----CC-cchhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNT----YP-RTYDL  135 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~t----yP-rtyDl  135 (223)
                      +-++||++|||+|..+.+|++.     .|+++.+.|.......+.+...|+-.    ...|..+.++.    ++ .+||+
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~  135 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  135 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence            4579999999999988888753     35555554433333555556668733    23333444444    44 68999


Q ss_pred             hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      ++.++-.+.    ......+.|.-|+|||||.+|++|
T Consensus       136 ifiD~~~~~----~~~~~~l~~~~~lLkpGGvIv~Dd  168 (214)
T d2cl5a1         136 VFLDHWKDR----YLPDTLLLEKCGLLRKGTVLLADN  168 (214)
T ss_dssp             EEECSCGGG----HHHHHHHHHHTTCEEEEEEEEESC
T ss_pred             eeecccccc----cccHHHHHHHhCccCCCcEEEEeC
Confidence            887632222    222356788889999999988875

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=9.7e-07  Score=76.08  Aligned_cols=150  Identities=13%  Similarity=0.138  Sum_probs=88.4

Q ss_pred             HhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc--cc-cc
Q 027471           47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL--FG-LY  119 (223)
Q Consensus        47 ~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL--i~-~~  119 (223)
                      .+|+.+...+-+ ..     ..... +|||+|||+|..|.+|+..    .|+...+++.--.-..+-+..-|+  +. ..
T Consensus        92 peTE~lv~~~l~-~~-----~~~~~-~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~  164 (274)
T d2b3ta1          92 PDTECLVEQALA-RL-----PEQPC-RILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQ  164 (274)
T ss_dssp             TTHHHHHHHHHH-HS-----CSSCC-EEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred             cchhhhhhhHhh-hh-----ccccc-ceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeee
Confidence            556666555433 21     12233 4999999999998888653    455555544322111121222333  23 33


Q ss_pred             ccccccCCCCC-cchhhhhhhhhh-------------cccc---------cccchhHHHHhhhhcccCCcEEEEeccHHH
Q 027471          120 HDWCESFNTYP-RTYDLLHADHLF-------------STIK---------KRCSLKAVVAEVDRILRPDGNLILRDDAET  176 (223)
Q Consensus       120 ~dwce~f~tyP-rtyDllH~~~lf-------------s~~~---------~rC~i~~vl~E~DRILRPgG~~ii~D~~~~  176 (223)
                      .||   |+..+ ..||+|-|.--+             .+..         ..-.+..++.+..+.|+|||.+++--....
T Consensus       165 ~d~---~~~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q  241 (274)
T d2b3ta1         165 SDW---FSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQ  241 (274)
T ss_dssp             CST---TGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSC
T ss_pred             ccc---ccccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchH
Confidence            343   33344 689997664111             0000         001123688999999999999999533333


Q ss_pred             HHHHHHHHHhCCCee-E-EeecCCCeeEEEEE
Q 027471          177 IVEVEDLVKSLHWDV-R-MIYTNDNQGMLCVH  206 (223)
Q Consensus       177 ~~~i~~i~~~l~W~~-~-~~~~~~~e~~L~~~  206 (223)
                      ...+.++++.-.|.. . ..|-.+.+++++++
T Consensus       242 ~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r  273 (274)
T d2b3ta1         242 GEAVRQAFILAGYHDVETCRDYGDNERVTLGR  273 (274)
T ss_dssp             HHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred             HHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence            567888888888863 2 45667789999885

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=1.4e-06  Score=79.04  Aligned_cols=108  Identities=13%  Similarity=0.054  Sum_probs=58.8

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh-------Cccc--ccccccccC
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER-------GLFG--LYHDWCESF  126 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR-------GLi~--~~~dwce~f  126 (223)
                      -++.++++.+.  ++||+|||.|.++..++..    .|+-+.++|....-..+.+.+-       |.-.  +-.+....|
T Consensus       208 Il~~l~Lkpgd--~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f  285 (406)
T d1u2za_         208 VYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF  285 (406)
T ss_dssp             HHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred             HHHHhCCCCCC--EEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeech
Confidence            34567777775  5999999999988766543    4777777665332111111111       1110  111111222


Q ss_pred             CC---CC---cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          127 NT---YP---RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       127 ~t---yP---rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      -.   ++   ...|++.+.+ |.+   .-.+...|.|+-|+|||||.+|..+.
T Consensus       286 ~~~~~~d~~~~~adVV~inn-~~f---~~~l~~~L~ei~r~LKPGGrIVs~~~  334 (406)
T d1u2za_         286 VDNNRVAELIPQCDVILVNN-FLF---DEDLNKKVEKILQTAKVGCKIISLKS  334 (406)
T ss_dssp             TTCHHHHHHGGGCSEEEECC-TTC---CHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             hhccccccccccceEEEEec-ccC---chHHHHHHHHHHHhcCCCcEEEEecc
Confidence            11   11   1223333221 111   12356889999999999999998753

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.93  E-value=3.5e-07  Score=76.68  Aligned_cols=98  Identities=14%  Similarity=0.177  Sum_probs=55.9

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhh-CcccccccccccCCCCC--cchh
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFNTYP--RTYD  134 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f~tyP--rtyD  134 (223)
                      -++.|.++++.  +|||+|||+|-++|.|++..  |..+-..+.-.. ..+.++.. .-+-+.+.  .-+..+|  ..||
T Consensus        62 ml~~L~l~~g~--~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~-~A~~~~~~~~nv~~~~~--d~~~g~~~~~pfD  136 (224)
T d1vbfa_          62 MLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYN-YASKLLSYYNNIKLILG--DGTLGYEEEKPYD  136 (224)
T ss_dssp             HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHH-HHHHHHTTCSSEEEEES--CGGGCCGGGCCEE
T ss_pred             HHHHhhhcccc--eEEEecCCCCHHHHHHHHHhcccccccccHHHHH-HHHHHHhcccccccccC--chhhcchhhhhHH
Confidence            34556666665  89999999999999887763  444433222111 11111111 11222221  1223355  6799


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      .|++.......         .-++-+.|+|||.+|+-
T Consensus       137 ~Iiv~~a~~~i---------p~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         137 RVVVWATAPTL---------LCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             EEEESSBBSSC---------CHHHHHTEEEEEEEEEE
T ss_pred             HHHhhcchhhh---------hHHHHHhcCCCCEEEEE
Confidence            99987544322         22333569999999883

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.87  E-value=1.4e-06  Score=75.79  Aligned_cols=123  Identities=19%  Similarity=0.128  Sum_probs=68.8

Q ss_pred             CceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc--cc-c---cccccCCCCCcchhhhhhhhh
Q 027471           70 FVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG--LY-H---DWCESFNTYPRTYDLLHADHL  141 (223)
Q Consensus        70 ~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~--~~-~---dwce~f~tyPrtyDllH~~~l  141 (223)
                      .-.+|||++||+|+|+.+++..  .|+.+.+++..-....+-+..-|+-.  .+ .   +|.+.+.....+||+|-++--
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP  224 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  224 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence            3578999999999999998754  35545444432221222333445532  11 1   122223334478999876421


Q ss_pred             -hcccc-----cccchhHHHHhhhhcccCCcEEEEecc------HHHHHHHHHHHHhCCCeeE
Q 027471          142 -FSTIK-----KRCSLKAVVAEVDRILRPDGNLILRDD------AETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       142 -fs~~~-----~rC~i~~vl~E~DRILRPgG~~ii~D~------~~~~~~i~~i~~~l~W~~~  192 (223)
                       |+...     .......++..+-++|||||.+++...      .+..+.+.+-+..-..+..
T Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~  287 (318)
T d1wxxa2         225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLR  287 (318)
T ss_dssp             CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEE
Confidence             11111     011133788899999999999999733      2233445555555555544

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.1e-06  Score=69.58  Aligned_cols=131  Identities=16%  Similarity=0.111  Sum_probs=82.2

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCC-----CCcchh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNT-----YPRTYD  134 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~t-----yPrtyD  134 (223)
                      .+-++||++|||+|--|.+|++-     .|+++-..|.......+....-|+-.    ...|-.+.++.     .+.+||
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD  137 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  137 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence            44789999999999988888763     35555544433333455555566633    22333333433     257899


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHH---------------HH-HHHHHHHHhCCCeeEEeecCC
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE---------------TI-VEVEDLVKSLHWDVRMIYTND  198 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~---------------~~-~~i~~i~~~l~W~~~~~~~~~  198 (223)
                      +|..++-      .-....++.++-|.|||||.+++.|..-               .+ +-.+.|.+.-+|.....--  
T Consensus       138 ~ifiD~d------k~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPi--  209 (219)
T d2avda1         138 VAVVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL--  209 (219)
T ss_dssp             EEEECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS--
T ss_pred             EEEEeCC------HHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeec--
Confidence            9887622      2233466777789999999999984421               12 2234456677888764422  


Q ss_pred             CeeEEEEEe
Q 027471          199 NQGMLCVHK  207 (223)
Q Consensus       199 ~e~~L~~~K  207 (223)
                      .+++++|+|
T Consensus       210 gdGl~ia~K  218 (219)
T d2avda1         210 GDGLTLAFK  218 (219)
T ss_dssp             TTCEEEEEE
T ss_pred             CCeeEEEEe
Confidence            357999988

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.82  E-value=7.5e-06  Score=68.06  Aligned_cols=94  Identities=13%  Similarity=0.197  Sum_probs=62.1

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcc
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFST  144 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~  144 (223)
                      ...+.|+|+|||.|.++++|+++    .+++..+-++-......    -.+-.+-+|.   |...|. .|..-..++++.
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~----~r~~~~~~d~---~~~~P~-ad~~~l~~vlh~  151 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSY----PGVEHVGGDM---FVSIPK-ADAVFMKWICHD  151 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCC----TTEEEEECCT---TTCCCC-CSCEECSSSSTT
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccC----CceEEecccc---cccCCC-cceEEEEEEeec
Confidence            45899999999999999999876    56777764443221110    1223355653   334552 244334556666


Q ss_pred             ccc-ccchhHHHHhhhhcccCCcEEEEec
Q 027471          145 IKK-RCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       145 ~~~-rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      |.+ .|  ..+|..+-+.|+|||.++|-|
T Consensus       152 ~~d~~~--~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         152 WSDEHC--LKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             SCHHHH--HHHHHHHHHHCCSSSCEEEEE
T ss_pred             CCHHHH--HHHHHHHHHhcCCCceEEEEE
Confidence            653 33  589999999999999998874

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=2e-06  Score=69.52  Aligned_cols=135  Identities=11%  Similarity=0.139  Sum_probs=75.2

Q ss_pred             ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC-CCcchhhhhhhhhhcc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT-YPRTYDLLHADHLFST  144 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t-yPrtyDllH~~~lfs~  144 (223)
                      ..+|+|+||+-|||.-++.++     .|+.+.+.|...-+...+  -.|-+......-..... ....+|+|-|+..+..
T Consensus        23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~--~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~  100 (180)
T d1ej0a_          23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDF--LQGDFRDELVMKALLERVGDSKVQVVMSDMAPNM  100 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEE--EESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCC
T ss_pred             CCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceE--eecccccchhhhhhhhhccCcceeEEEecccchh
Confidence            457999999999999887654     366666666543222211  12222211100001111 2266899888877764


Q ss_pred             cccc--------cchhHHHHhhhhcccCCcEEEEe-----ccHHHHHHHHHHHHhCCCeeEE-eecCCCeeEEEEEe
Q 027471          145 IKKR--------CSLKAVVAEVDRILRPDGNLILR-----DDAETIVEVEDLVKSLHWDVRM-IYTNDNQGMLCVHK  207 (223)
Q Consensus       145 ~~~r--------C~i~~vl~E~DRILRPgG~~ii~-----D~~~~~~~i~~i~~~l~W~~~~-~~~~~~e~~L~~~K  207 (223)
                      ..++        ......|.=+.++|||||.||+=     +..+.+..++..++.++.-.-. .-.++.|.+|+|+.
T Consensus       101 sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv~~g  177 (180)
T d1ej0a_         101 SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG  177 (180)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEEE
T ss_pred             cccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhhcCEEEEECCCCcccCCceEEEEEec
Confidence            3321        11224444567899999999985     3333444555444443322110 01356899999985

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.68  E-value=7.4e-06  Score=69.43  Aligned_cols=132  Identities=14%  Similarity=0.100  Sum_probs=76.8

Q ss_pred             hhHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHH-hhCcccccc
Q 027471           45 FTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIY-ERGLFGLYH  120 (223)
Q Consensus        45 f~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~-eRGLi~~~~  120 (223)
                      |..+....+.++..    .  ++.  -.+||||+||+|+|+-.++++   .|+.+.+.|..- +.++.+. .-|+-+.+.
T Consensus        90 f~~~~~~er~ri~~----~--~~~--g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~-~~~~~N~~~n~l~~~v~  160 (260)
T d2frna1          90 FSPANVKERVRMAK----V--AKP--DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMS  160 (260)
T ss_dssp             CCGGGHHHHHHHHH----H--CCT--TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEE
T ss_pred             EecCCHHHHHHHHh----h--cCC--ccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHH-HHHHHHHHHhCCCceEE
Confidence            55555555555543    1  223  457999999999998877655   355554444322 2232223 236544222


Q ss_pred             cccccCCCCC--cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc-------HHHHHHHHHHHHhCCCee
Q 027471          121 DWCESFNTYP--RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD-------AETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       121 dwce~f~tyP--rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~-------~~~~~~i~~i~~~l~W~~  191 (223)
                      -.|+....++  ..||.|.+...       +.-...+-+.-++|+|||++.+-+.       .+..+.++++++....++
T Consensus       161 ~~~~D~~~~~~~~~~D~Ii~~~p-------~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v  233 (260)
T d2frna1         161 AYNMDNRDFPGENIADRILMGYV-------VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV  233 (260)
T ss_dssp             EECSCTTTCCCCSCEEEEEECCC-------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred             EEEcchHHhccCCCCCEEEECCC-------CchHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCce
Confidence            2223333444  77897765422       1224677888899999999866421       123466777887777776


Q ss_pred             E
Q 027471          192 R  192 (223)
Q Consensus       192 ~  192 (223)
                      .
T Consensus       234 ~  234 (260)
T d2frna1         234 E  234 (260)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.62  E-value=2.3e-06  Score=71.10  Aligned_cols=101  Identities=17%  Similarity=0.221  Sum_probs=63.9

Q ss_pred             hhhccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC--cchh
Q 027471           60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP--RTYD  134 (223)
Q Consensus        60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP--rtyD  134 (223)
                      -++.|.++++.  +|||+|||+|-.+|-|...   .|.++-..+.-.....+.+.+.|+..+..-.+..+..+|  ..||
T Consensus        70 ml~~L~l~~g~--~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD  147 (215)
T d1jg1a_          70 MLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYD  147 (215)
T ss_dssp             HHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHhhccCccc--eEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcce
Confidence            34556666664  8999999999999887643   477766644333334444555676553332233444456  8899


Q ss_pred             hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      .|++........      .-|++   -|+|||.+++-
T Consensus       148 ~Iiv~~a~~~ip------~~l~~---qL~~gGrLv~p  175 (215)
T d1jg1a_         148 VIIVTAGAPKIP------EPLIE---QLKIGGKLIIP  175 (215)
T ss_dssp             EEEECSBBSSCC------HHHHH---TEEEEEEEEEE
T ss_pred             eEEeecccccCC------HHHHH---hcCCCCEEEEE
Confidence            999974444322      33443   49999999873

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=5.8e-06  Score=71.73  Aligned_cols=106  Identities=9%  Similarity=0.043  Sum_probs=57.9

Q ss_pred             hhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhH-------HhhCcc-cccccccccCCC
Q 027471           61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPII-------YERGLF-GLYHDWCESFNT  128 (223)
Q Consensus        61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i-------~eRGLi-~~~~dwce~f~t  128 (223)
                      ++.++++.+.  .|||+|||.|.++-.++..    .|+.+.++|.......+.+       ..-|+- +-+.=.|..|..
T Consensus       144 ~~~~~l~~~~--~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~  221 (328)
T d1nw3a_         144 IDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  221 (328)
T ss_dssp             HHHSCCCTTC--EEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred             HHHcCCCCCC--EEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence            3455666655  6999999999977555422    4667777665322111111       111221 111112245544


Q ss_pred             CC---cch--hhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          129 YP---RTY--DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       129 yP---rty--DllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      .|   ..+  |+|-+.+ |.+.   -.+...|.|+-|+|||||.+|..+
T Consensus       222 ~~~~~~~~~advi~~~~-~~f~---~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         222 EEWRERIANTSVIFVNN-FAFG---PEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             HHHHHHHHHCSEEEECC-TTTC---HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccccccCcceEEEEcc-eecc---hHHHHHHHHHHHhCCCCcEEEEec
Confidence            33   344  3433321 1111   234588999999999999999864

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.55  E-value=2.7e-05  Score=65.07  Aligned_cols=90  Identities=12%  Similarity=0.207  Sum_probs=63.5

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc---cc-ccccccccCCCCCcchhhhhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL---FG-LYHDWCESFNTYPRTYDLLHAD  139 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL---i~-~~~dwce~f~tyPrtyDllH~~  139 (223)
                      ....++|+|+|||.|.++.+++++    .++++++-++        +.+.+.   +- +-+|   .|..- ..+|++.+.
T Consensus        78 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v--------i~~~~~~~rv~~~~gD---~f~~~-p~aD~~~l~  145 (244)
T d1fp2a2          78 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQV--------VENLSGSNNLTYVGGD---MFTSI-PNADAVLLK  145 (244)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH--------HTTCCCBTTEEEEECC---TTTCC-CCCSEEEEE
T ss_pred             ccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHH--------HHhCcccCceEEEecC---cccCC-CCCcEEEEE
Confidence            356889999999999999999876    5667775321        111111   22 3343   34333 467999999


Q ss_pred             hhhccccc-ccchhHHHHhhhhcccCC---cEEEEe
Q 027471          140 HLFSTIKK-RCSLKAVVAEVDRILRPD---GNLILR  171 (223)
Q Consensus       140 ~lfs~~~~-rC~i~~vl~E~DRILRPg---G~~ii~  171 (223)
                      ++++.|.+ .|  ..+|.-+-+.|+||   |.++|-
T Consensus       146 ~vLHdw~d~~~--~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         146 YILHNWTDKDC--LRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             SCGGGSCHHHH--HHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             eecccCChHHH--HHHHHHHHHHcCcccCCcEEEEE
Confidence            99999985 34  58889999999999   666665

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.55  E-value=2e-05  Score=67.64  Aligned_cols=153  Identities=9%  Similarity=0.149  Sum_probs=88.2

Q ss_pred             hHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHh-hCccc---c
Q 027471           46 TADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYE-RGLFG---L  118 (223)
Q Consensus        46 ~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~e-RGLi~---~  118 (223)
                      ..||+.+.+.+.+ |....     ....|+|+|||.|..+.+++..   .|+.+.++|.--. ..+.+.+ -|+-.   +
T Consensus        92 RpeTE~lv~~~~~-~~~~~-----~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~-~A~~Na~~~~~~~~~~i  164 (271)
T d1nv8a_          92 RPETEELVELALE-LIRKY-----GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVE-IARKNAERHGVSDRFFV  164 (271)
T ss_dssp             CTTHHHHHHHHHH-HHHHH-----TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHH-HHHHHHHHTTCTTSEEE
T ss_pred             hhhhhhhhhhhhh-hhccc-----cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHH-HHHHHHHHcCCCceeEE
Confidence            4667777777765 55433     2457999999999877777544   4666666554221 1222222 35422   2


Q ss_pred             c-ccccccCCCCCcchhhhhhhh-------hhcc---cc-------cccchhHHHHhhhhcccCCcEEEEeccHHHHHHH
Q 027471          119 Y-HDWCESFNTYPRTYDLLHADH-------LFST---IK-------KRCSLKAVVAEVDRILRPDGNLILRDDAETIVEV  180 (223)
Q Consensus       119 ~-~dwce~f~tyPrtyDllH~~~-------lfs~---~~-------~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i  180 (223)
                      + .||-+.++.....||+|=|.-       ....   +.       ....++.+-.=+.+.|+|||++++--..+.-+.+
T Consensus       165 ~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v  244 (271)
T d1nv8a_         165 RKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEEL  244 (271)
T ss_dssp             EESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHH
T ss_pred             eecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHHH
Confidence            2 344444443446789865531       0000   00       0011222211146899999999996444445667


Q ss_pred             HHHHHhCCCeeEEeecCCCeeEEEEEec
Q 027471          181 EDLVKSLHWDVRMIYTNDNQGMLCVHKT  208 (223)
Q Consensus       181 ~~i~~~l~W~~~~~~~~~~e~~L~~~K~  208 (223)
                      +++++...|   ..|-.+.+++++++|+
T Consensus       245 ~~l~~~~g~---~kDl~g~~R~~~~~k~  269 (271)
T d1nv8a_         245 KKIVSDTVF---LKDSAGKYRFLLLNRR  269 (271)
T ss_dssp             TTTSTTCEE---EECTTSSEEEEEEECC
T ss_pred             HHHHHhCCE---EeccCCCcEEEEEEEc
Confidence            777766554   4566789999999996

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.48  E-value=1.8e-05  Score=68.56  Aligned_cols=101  Identities=17%  Similarity=0.104  Sum_probs=59.1

Q ss_pred             eEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCccccccccccc-------CCCCCcchhhhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLFGLYHDWCES-------FNTYPRTYDLLHADHL  141 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~-------f~tyPrtyDllH~~~l  141 (223)
                      .+|||++||+|+|+.+++..+   |+.+.+++.......+-+..-|+-..++-.++.       +..-.++||+|=++--
T Consensus       147 ~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP  226 (324)
T d2as0a2         147 DRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPP  226 (324)
T ss_dssp             CEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcCCc
Confidence            589999999999999887764   455555444322222223334553322222222       1113368999776422


Q ss_pred             -hccccc-----ccchhHHHHhhhhcccCCcEEEEec
Q 027471          142 -FSTIKK-----RCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       142 -fs~~~~-----rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                       |...+.     ......++...-|+|+|||.+++..
T Consensus       227 ~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         227 AFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             CSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence             111111     1123468889999999999999974

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.10  E-value=4.3e-05  Score=63.27  Aligned_cols=86  Identities=14%  Similarity=0.150  Sum_probs=49.6

Q ss_pred             ceEEEeeCCchHHHHHHhhCC----C------eEEEEecCCCCCCChhhHHh---------hCc--ccccccccccCCCC
Q 027471           71 VRNVMDMRAVYGGFAAALKDL----K------VWVMNVVPIESPDTLPIIYE---------RGL--FGLYHDWCESFNTY  129 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~----~------V~vmnv~p~~~~~~l~~i~e---------RGL--i~~~~dwce~f~ty  129 (223)
                      --+|||+|||+|-++|.|.+.    +      |+.+-..+.    .+..+.+         .|+  +-+++  +.....+
T Consensus        81 g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~----l~~~a~~~l~~~~~~~~~~~nv~~~~--~d~~~~~  154 (223)
T d1r18a_          81 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAE----LVRRSKANLNTDDRSMLDSGQLLIVE--GDGRKGY  154 (223)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHH----HHHHHHHHHHHHHHHHHHHTSEEEEE--SCGGGCC
T ss_pred             CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHH----HHHHHHHhhhhcchhhcCccEEEEEe--ccccccc
Confidence            458999999999999888654    2      444322111    2222211         122  11222  1223335


Q ss_pred             C--cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471          130 P--RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       130 P--rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      |  ..||.|+++....         .+-..+-+.|+|||.+|+-
T Consensus       155 ~~~~~fD~Iiv~~a~~---------~~p~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         155 PPNAPYNAIHVGAAAP---------DTPTELINQLASGGRLIVP  189 (223)
T ss_dssp             GGGCSEEEEEECSCBS---------SCCHHHHHTEEEEEEEEEE
T ss_pred             ccccceeeEEEEeech---------hchHHHHHhcCCCcEEEEE
Confidence            4  7899999974433         2223445789999999873

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.99  E-value=1.3e-05  Score=62.00  Aligned_cols=99  Identities=13%  Similarity=0.096  Sum_probs=52.0

Q ss_pred             ceEEEeeCCchHHHHHHhhCCCe---EEEEecCCCCCCChhhH-HhhCccc---ccccccccC-CCCCcchhhhhhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLKV---WVMNVVPIESPDTLPII-YERGLFG---LYHDWCESF-NTYPRTYDLLHADHLF  142 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~V---~vmnv~p~~~~~~l~~i-~eRGLi~---~~~dwce~f-~tyPrtyDllH~~~lf  142 (223)
                      -.+|||++||+|+|+-..+.++.   +.+-..|... +.++.+ ..-|+..   +++.-|..+ ......||+|.++--|
T Consensus        15 g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~-~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy   93 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQ-AIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY   93 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHH-HHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred             CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhh-hhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence            45799999999999976655653   4332222111 111122 2224422   344323332 2234889999876333


Q ss_pred             cccccccchhHHHHhhhhcccCCcEEEEec
Q 027471          143 STIKKRCSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      ........+ +.+.+ .++|+|||.+++..
T Consensus        94 ~~~~~~~~l-~~i~~-~~~L~~~g~iiiE~  121 (152)
T d2esra1          94 AKETIVATI-EALAA-KNLLSEQVMVVCET  121 (152)
T ss_dssp             HHHHHHHHH-HHHHH-TTCEEEEEEEEEEE
T ss_pred             ccchHHHHH-HHHHH-CCCcCCCeEEEEEe
Confidence            221111112 22222 48999999999853

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=96.89  E-value=0.00014  Score=63.03  Aligned_cols=101  Identities=17%  Similarity=0.155  Sum_probs=54.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHh-hCccc-----cccc---ccccCCCCCcchhhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYE-RGLFG-----LYHD---WCESFNTYPRTYDLLHA  138 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~e-RGLi~-----~~~d---wce~f~tyPrtyDllH~  138 (223)
                      -++|||+.||+|+|+-+++..+   |+.+.+++..-. ..+.+++ .|+-.     +..|   |.+.+..-.+.||+|=+
T Consensus       145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~-~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~  223 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRA-LSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  223 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHH-HHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHH-HHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence            4689999999999987765543   444554443222 2222332 35522     1222   11111113367999766


Q ss_pred             hh-hhcccccc-----cchhHHHHhhhhcccCCcEEEEec
Q 027471          139 DH-LFSTIKKR-----CSLKAVVAEVDRILRPDGNLILRD  172 (223)
Q Consensus       139 ~~-lfs~~~~r-----C~i~~vl~E~DRILRPgG~~ii~D  172 (223)
                      +- .|+..++.     -....++...=++|+|||.++++.
T Consensus       224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s  263 (317)
T d2b78a2         224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  263 (317)
T ss_dssp             CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            41 12211110     012367888889999999999973

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.73  E-value=0.00065  Score=54.66  Aligned_cols=112  Identities=13%  Similarity=0.037  Sum_probs=63.4

Q ss_pred             ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHH----hhCcccccccccccCCCCCcchhhhhhhhhhc
Q 027471           71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIY----ERGLFGLYHDWCESFNTYPRTYDLLHADHLFS  143 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~----eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs  143 (223)
                      -.+|||+|||+|+++.+++.++   |+.+.+.|.    .+..+.    +-|+-..+  .|.....++..||+|=++-=|.
T Consensus        47 g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~----~~~~a~~N~~~~~~~~~~--~~~d~~~~~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKE----AVDVLIENLGEFKGKFKV--FIGDVSEFNSRVDIVIMNPPFG  120 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHH----HHHHHHHHTGGGTTSEEE--EESCGGGCCCCCSEEEECCCCS
T ss_pred             CCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHH----HHHHHHHHHHHcCCCceE--EECchhhhCCcCcEEEEcCccc
Confidence            3579999999999987666553   555555443    222222    22322111  2334455788899987765554


Q ss_pred             ccccccchhHHHHhhhhcccCCcEEEE--eccHHHHHHHHHHHHhCCCeeE
Q 027471          144 TIKKRCSLKAVVAEVDRILRPDGNLIL--RDDAETIVEVEDLVKSLHWDVR  192 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~DRILRPgG~~ii--~D~~~~~~~i~~i~~~l~W~~~  192 (223)
                      .....+..+++    .+.+.+++.++.  .........++++.+...|...
T Consensus       121 ~~~~~~d~~~l----~~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~  167 (201)
T d1wy7a1         121 SQRKHADRPFL----LKAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVT  167 (201)
T ss_dssp             SSSTTTTHHHH----HHHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEE
T ss_pred             cccccccHHHH----HHHHhhcccchhcccchHHHHHHHHHHHhhcCceEE
Confidence            33333333332    233444444433  3445556677888888888764

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.67  E-value=0.00074  Score=55.93  Aligned_cols=100  Identities=15%  Similarity=0.099  Sum_probs=61.8

Q ss_pred             CCCceEEEeeCCchHHHHHHhhC----C-CeEEEEecCCCCCCChhhHHhhCcccc----cccccccCCC------CCcc
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKD----L-KVWVMNVVPIESPDTLPIIYERGLFGL----YHDWCESFNT------YPRT  132 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~----~-~V~vmnv~p~~~~~~l~~i~eRGLi~~----~~dwce~f~t------yPrt  132 (223)
                      ..+-++||.+|+++|--|.+|++    . .|+++-..|.......+.+..-|+-.-    ..+-.+.++.      .+++
T Consensus        57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence            34578999999999987777752    2 455555544433335556666677332    2222223333      2468


Q ss_pred             hhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          133 YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       133 yDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      ||+|-.++    .+  -....++...-+.|||||.+|+++-
T Consensus       137 fD~iFiDa----~k--~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         137 YDFIFVDA----DK--DNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             BSEEEECS----CS--TTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             eeEEEecc----ch--hhhHHHHHHHHhhcCCCcEEEEccC
Confidence            99976551    12  2234666666789999999999844

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.34  E-value=0.0037  Score=52.32  Aligned_cols=151  Identities=15%  Similarity=0.206  Sum_probs=89.9

Q ss_pred             hhhhHHHHHhhhhhhccC-CCCCCceEEEeeCCchHH--HHHHhh--CCCeEEEEecCCCCC--CChh-hHHhhCccc--
Q 027471           48 DYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGG--FAAALK--DLKVWVMNVVPIESP--DTLP-IIYERGLFG--  117 (223)
Q Consensus        48 D~~~W~~~v~~~Y~~~l~-i~~~~iRnvLDmgaG~Gg--FAA~L~--~~~V~vmnv~p~~~~--~~l~-~i~eRGLi~--  117 (223)
                      ..+.|.+++-.+ +..+. ++.....+++|+|+|-|-  .--++.  +..|+.+   .....  ..++ ++.+=||-.  
T Consensus        48 ~~~i~~rHi~DS-l~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lv---es~~KK~~FL~~v~~~L~L~n~~  123 (239)
T d1xdza_          48 KKEVYLKHFYDS-ITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIV---DSLNKRITFLEKLSEALQLENTT  123 (239)
T ss_dssp             HHHHHHHTHHHH-HGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHHHHHTCSSEE
T ss_pred             HHHHHHHhccch-hhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCccceee---cchHHHHHHHHHHHHHhCCCCcE
Confidence            346676666552 22222 333345789999999874  333333  3344333   33332  2333 455668855  


Q ss_pred             ccccccccCCC---CCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe---ccHHHHHHHHHHHHhCCCee
Q 027471          118 LYHDWCESFNT---YPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR---DDAETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       118 ~~~dwce~f~t---yPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~---D~~~~~~~i~~i~~~l~W~~  191 (223)
                      ++|+-.|.+..   +...||+|-|- .      -..+..++.-....|+|||.+++-   +..+.+...++..+.+.++.
T Consensus       124 i~~~R~E~~~~~~~~~~~~D~v~sR-A------va~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~  196 (239)
T d1xdza_         124 FCHDRAETFGQRKDVRESYDIVTAR-A------VARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGEL  196 (239)
T ss_dssp             EEESCHHHHTTCTTTTTCEEEEEEE-C------CSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEE
T ss_pred             EEeehhhhccccccccccceEEEEh-h------hhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEE
Confidence            56655565543   44689998873 2      245668888889999999999997   44455666677777888876


Q ss_pred             EEee------cCCCeeEEEEEecc
Q 027471          192 RMIY------TNDNQGMLCVHKTY  209 (223)
Q Consensus       192 ~~~~------~~~~e~~L~~~K~~  209 (223)
                      ....      .+..-.+++.+|.-
T Consensus       197 ~~v~~~~lp~~~~~r~lv~i~K~~  220 (239)
T d1xdza_         197 ENIHSFKLPIEESDRNIMVIRKIK  220 (239)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEECS
T ss_pred             EEEEEEeCCCCCCCEEEEEEEECC
Confidence            4221      12234577777654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=96.19  E-value=0.0025  Score=54.94  Aligned_cols=140  Identities=16%  Similarity=0.099  Sum_probs=76.7

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHhh------Cc-----cc-ccccccccCCCCCcchh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYER------GL-----FG-LYHDWCESFNTYPRTYD  134 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~eR------GL-----i~-~~~dwce~f~tyPrtyD  134 (223)
                      ...-++||.+|+|-|+.++.+.+. ++--+.++..+.. -++++.+.      |.     +- ++.|.=+-+...++.||
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~-Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGE-LVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHH-HHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHH-HHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence            345789999999999999998776 3322333333221 22222111      11     11 22332222333678899


Q ss_pred             hhhhhhhhcccc---cccch--hHHHHhhhhcccCCcEEEEe------ccHHHHHHHHHHHHhCCCeeEEee----c-CC
Q 027471          135 LLHADHLFSTIK---KRCSL--KAVVAEVDRILRPDGNLILR------DDAETIVEVEDLVKSLHWDVRMIY----T-ND  198 (223)
Q Consensus       135 llH~~~lfs~~~---~rC~i--~~vl~E~DRILRPgG~~ii~------D~~~~~~~i~~i~~~l~W~~~~~~----~-~~  198 (223)
                      +|-++. +....   ....+  ..++..+.|.|+|||.++..      ...+....+.+.+++.=-.+....    + ..
T Consensus       154 vIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~  232 (312)
T d1uira_         154 VVIIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFL  232 (312)
T ss_dssp             EEEEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTE
T ss_pred             EEEEeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCC
Confidence            988652 21111   11111  36788999999999999884      223345556555555544443321    1 12


Q ss_pred             CeeEEEEEecc
Q 027471          199 NQGMLCVHKTY  209 (223)
Q Consensus       199 ~e~~L~~~K~~  209 (223)
                      .-.+++|.|..
T Consensus       233 ~w~f~~aS~~~  243 (312)
T d1uira_         233 NFGFLLASDAF  243 (312)
T ss_dssp             EEEEEEEESSS
T ss_pred             CCEeEEEeCCC
Confidence            35688898864

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.08  E-value=0.0014  Score=53.31  Aligned_cols=106  Identities=14%  Similarity=0.114  Sum_probs=53.9

Q ss_pred             ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccccc
Q 027471           71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK  147 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~  147 (223)
                      -++|||+|||+|.+|-++..+   .|+.+.+.|.    .++.+.+. + .-+.--|..+...++.||+|=|+--|.....
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~----a~~~ar~N-~-~~~~~~~~D~~~l~~~fD~Vi~NPPfg~~~~  122 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPD----AIETAKRN-C-GGVNFMVADVSEISGKYDTWIMNPPFGSVVK  122 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHH----HHHHHHHH-C-TTSEEEECCGGGCCCCEEEEEECCCC-----
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHH----HHHHHHHc-c-ccccEEEEehhhcCCcceEEEeCcccchhhh
Confidence            478999999999987555544   3655555432    44433332 1 1111123455667889999877644432221


Q ss_pred             ccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHh
Q 027471          148 RCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKS  186 (223)
Q Consensus       148 rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~  186 (223)
                      ...  ..+  ++..+.+++.++..-......-+++.+..
T Consensus       123 ~~D--~~f--l~~a~~~~~~iy~ih~~~~~~~i~~~~~~  157 (197)
T d1ne2a_         123 HSD--RAF--IDKAFETSMWIYSIGNAKARDFLRREFSA  157 (197)
T ss_dssp             --C--HHH--HHHHHHHEEEEEEEEEGGGHHHHHHHHHH
T ss_pred             hch--HHH--HHHHHhcCCeEEEehhhhHHHHHHHHhhc
Confidence            121  122  23456666554443333344444544433

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.00  E-value=0.0027  Score=51.09  Aligned_cols=114  Identities=15%  Similarity=0.203  Sum_probs=63.0

Q ss_pred             cCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc-----ccccccccccCCC------
Q 027471           64 MGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL-----FGLYHDWCESFNT------  128 (223)
Q Consensus        64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL-----i~~~~dwce~f~t------  128 (223)
                      |.+..+  .+++|++||+||++.+++++    .|..+...|.    .++.+.++-=     +-.++   ..|+.      
T Consensus        19 l~~~~~--~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~----~l~~a~~~l~~~~~r~~~~~---~~f~~~~~~~~   89 (192)
T d1m6ya2          19 LKPEDE--KIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSE----VLRIAEEKLKEFSDRVSLFK---VSYREADFLLK   89 (192)
T ss_dssp             HCCCTT--CEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHH----HHHHHHHHTGGGTTTEEEEE---CCGGGHHHHHH
T ss_pred             hCCCCC--CEEEEecCCCcHHHHHHHhcCCCCeEEEeechHH----HHHHHHHhhccccccccchh---HHHhhHHHHHH
Confidence            344444  48999999999999998775    3444544322    4555544321     22333   24433      


Q ss_pred             -CC-cchhhhh-----hhhhhccc-ccccchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHh
Q 027471          129 -YP-RTYDLLH-----ADHLFSTI-KKRCSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKS  186 (223)
Q Consensus       129 -yP-rtyDllH-----~~~lfs~~-~~rC~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~  186 (223)
                       ++ ..||-|=     ++.-+... ..-..+...|.++-++|+|||.+++-.-.. ....++++++.
T Consensus        90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~  156 (192)
T d1m6ya2          90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN  156 (192)
T ss_dssp             HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence             32 4444321     11111111 111223478899999999999997754333 34456676654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=95.87  E-value=0.00037  Score=54.75  Aligned_cols=96  Identities=15%  Similarity=0.120  Sum_probs=52.2

Q ss_pred             eEEEeeCCchHHHHHHhhCCCeEEEEecCCCCC--CChhhH-HhhCccc-ccccccccCC---CCC-cchhhhhhhhhhc
Q 027471           72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP--DTLPII-YERGLFG-LYHDWCESFN---TYP-RTYDLLHADHLFS  143 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~--~~l~~i-~eRGLi~-~~~dwce~f~---tyP-rtyDllH~~~lfs  143 (223)
                      .+|||++||+|+++.+..+++.-|. .+..+..  +..+.+ ..-|+-. +...-+..|-   ..+ ..||+|-++-=|.
T Consensus        43 ~~vLDl~~G~G~~~i~a~~~ga~vv-~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~  121 (171)
T d1ws6a1          43 GRFLDPFAGSGAVGLEAASEGWEAV-LVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA  121 (171)
T ss_dssp             CEEEEETCSSCHHHHHHHHTTCEEE-EECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred             CeEEEeccccchhhhhhhhccchhh-hcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccccc
Confidence            3799999999999998888876554 2332221  122222 2334432 2222222221   122 6799886642222


Q ss_pred             ccccccchhHHHHhh--hhcccCCcEEEEecc
Q 027471          144 TIKKRCSLKAVVAEV--DRILRPDGNLILRDD  173 (223)
Q Consensus       144 ~~~~rC~i~~vl~E~--DRILRPgG~~ii~D~  173 (223)
                      .     .+..++.++  ..+|+|||.+++..+
T Consensus       122 ~-----~~~~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         122 M-----DLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             S-----CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             c-----CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence            1     122233332  368999999998643

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.71  E-value=0.0045  Score=48.00  Aligned_cols=135  Identities=14%  Similarity=0.140  Sum_probs=67.8

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCC-Ccchhh
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY-PRTYDL  135 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~ty-PrtyDl  135 (223)
                      +.+....+  -+|||.+||.|+|..++.++     .+...-+.|....-...     ..+ ...|   .+... ...||+
T Consensus        13 ~l~~~~~~--~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~-----~~~-~~~~---~~~~~~~~~fd~   81 (223)
T d2ih2a1          13 SLAEAPRG--GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW-----AEG-ILAD---FLLWEPGEAFDL   81 (223)
T ss_dssp             HHCCCCTT--CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTT-----EEE-EESC---GGGCCCSSCEEE
T ss_pred             HhcCCCCc--CEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhccc-----cee-eeee---hhccccccccce
Confidence            44444443  48999999999998877643     34555554443221110     000 1122   22222 267888


Q ss_pred             hhhhhhhcccc-------------------------cccchh-HHHHhhhhcccCCcEEEEeccHHH-----HHHHHH-H
Q 027471          136 LHADHLFSTIK-------------------------KRCSLK-AVVAEVDRILRPDGNLILRDDAET-----IVEVED-L  183 (223)
Q Consensus       136 lH~~~lfs~~~-------------------------~rC~i~-~vl~E~DRILRPgG~~ii~D~~~~-----~~~i~~-i  183 (223)
                      +.+.--|....                         ....+. .++.-.-+.|+|||++.+=-+...     -..+++ |
T Consensus        82 ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l  161 (223)
T d2ih2a1          82 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFL  161 (223)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHH
T ss_pred             ecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHH
Confidence            76655543221                         111122 345567789999999866422221     234443 4


Q ss_pred             HHhCCCeeEEee-----cCCCeeEEEEEe
Q 027471          184 VKSLHWDVRMIY-----TNDNQGMLCVHK  207 (223)
Q Consensus       184 ~~~l~W~~~~~~-----~~~~e~~L~~~K  207 (223)
                      ++..+.......     ..-.-.+|+.+|
T Consensus       162 ~~~~~i~i~~~~~~F~~~~v~t~i~~~~k  190 (223)
T d2ih2a1         162 AREGKTSVYYLGEVFPQKKVSAVVIRFQK  190 (223)
T ss_dssp             HHHSEEEEEEEESCSTTCCCCEEEEEEES
T ss_pred             HhcCCEEEEcchhcCCCCCCcEEEEEEEe
Confidence            666555433221     112455666665

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.0014  Score=51.70  Aligned_cols=95  Identities=9%  Similarity=0.057  Sum_probs=53.7

Q ss_pred             EEEeeCCchHHHHHHhhCCCeEEEEecCCCCC--CChhhHHhhCccc---c-cccccccCCCCCcchhhhhhhhhhcccc
Q 027471           73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESP--DTLPIIYERGLFG---L-YHDWCESFNTYPRTYDLLHADHLFSTIK  146 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~--~~l~~i~eRGLi~---~-~~dwce~f~tyPrtyDllH~~~lfs~~~  146 (223)
                      +|||+.||+|++|-..+.++..-.-.+..+..  +.++.+.+..-..   + ..|.-+-+..-...||+|-++-=|..  
T Consensus        46 ~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~--  123 (183)
T d2fpoa1          46 QCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR--  123 (183)
T ss_dssp             EEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSST--
T ss_pred             hhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcccc--
Confidence            69999999999998877786642233333322  2444445543222   1 22211112223478999888743331  


Q ss_pred             cccchhHHHHhh--hhcccCCcEEEEe
Q 027471          147 KRCSLKAVVAEV--DRILRPDGNLILR  171 (223)
Q Consensus       147 ~rC~i~~vl~E~--DRILRPgG~~ii~  171 (223)
                        ...+.++.-+  -.+|+|+|.+|+-
T Consensus       124 --~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         124 --GLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             --TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             --chHHHHHHHHHHCCCCCCCeEEEEE
Confidence              2233333222  3589999999984

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.015  Score=47.35  Aligned_cols=128  Identities=10%  Similarity=0.033  Sum_probs=72.3

Q ss_pred             hhhhHHHHHhhhhhhccC-CCCCCceEEEeeCCchHH--HHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc--ccc
Q 027471           48 DYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGG--FAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG--LYH  120 (223)
Q Consensus        48 D~~~W~~~v~~~Y~~~l~-i~~~~iRnvLDmgaG~Gg--FAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~  120 (223)
                      ..+.|.+++-.+.. .+. ++.+   +++|+|+|-|-  .--|+...  .|+.+.-+..-..-..+++.+=||-.  +++
T Consensus        46 ~~~~~~rHi~DSl~-~~~~~~~~---~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~  121 (207)
T d1jsxa_          46 PNEMLVRHILDSIV-VAPYLQGE---RFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQ  121 (207)
T ss_dssp             --CHHHHHHHHHHH-HGGGCCSS---EEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred             HHHHHHHHhcchHh-hhhhhcCC---ceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeec
Confidence            34567666655322 112 3322   69999999884  33333333  34443221111111445566668854  444


Q ss_pred             cccccCCCC-C-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCee
Q 027471          121 DWCESFNTY-P-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDV  191 (223)
Q Consensus       121 dwce~f~ty-P-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~  191 (223)
                         ++...+ + ..||+|-|- .      -+++..++--..+.|+|||.+++--.....++++.+-  -.|+.
T Consensus       122 ---~R~E~~~~~~~fD~V~sR-A------~~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~--~~~~~  182 (207)
T d1jsxa_         122 ---SRVEEFPSEPPFDGVISR-A------FASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP--EEYQV  182 (207)
T ss_dssp             ---CCTTTSCCCSCEEEEECS-C------SSSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSC--TTEEE
T ss_pred             ---cchhhhccccccceehhh-h------hcCHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhh--cCCEE
Confidence               455554 3 689998762 2      2456688888889999999999986555555555432  35654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=94.49  E-value=0.047  Score=46.27  Aligned_cols=131  Identities=19%  Similarity=0.160  Sum_probs=66.9

Q ss_pred             EEEeeCCchHHHHHHhhCCC-e---EEEEe-cCC-CCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcccc
Q 027471           73 NVMDMRAVYGGFAAALKDLK-V---WVMNV-VPI-ESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIK  146 (223)
Q Consensus        73 nvLDmgaG~GgFAA~L~~~~-V---~vmnv-~p~-~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~  146 (223)
                      +|+|+|||-|||.-++++++ |   ....+ ++. +.| .....+-.+++..-.. ..-|..-|.-.|+|=|+-.=|.-.
T Consensus        69 ~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P-~~~~~~~~ni~~~~~~-~dv~~l~~~~~D~vlcDm~ess~~  146 (257)
T d2p41a1          69 KVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEP-IPMSTYGWNLVRLQSG-VDVFFIPPERCDTLLCDIGESSPN  146 (257)
T ss_dssp             EEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCSTTGGGEEEECS-CCTTTSCCCCCSEEEECCCCCCSS
T ss_pred             eEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCC-ccccccccccccchhh-hhHHhcCCCcCCEEEeeCCCCCCC
Confidence            58999999999999998773 3   22222 111 011 1111222333321100 011112346688887763222100


Q ss_pred             ---cccchhHHHHhhhhcccCCcEEEEe--c--cHHHHHHHHHHHHhCCCeeEE-ee--cCCCeeEEEE
Q 027471          147 ---KRCSLKAVVAEVDRILRPDGNLILR--D--DAETIVEVEDLVKSLHWDVRM-IY--TNDNQGMLCV  205 (223)
Q Consensus       147 ---~rC~i~~vl~E~DRILRPgG~~ii~--D--~~~~~~~i~~i~~~l~W~~~~-~~--~~~~e~~L~~  205 (223)
                         +.-..-.+|.=+.+.|+|||.|++-  .  ..+++++++.+-....=...- ..  ....|.++++
T Consensus       147 ~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fgg~lVR~P~SRnst~EmY~Vs  215 (257)
T d2p41a1         147 PTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGALVRNPLSRNSTHEMYWVS  215 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCTTSCTTCCCEEEET
T ss_pred             chhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhCCeeEcCCCCccccceeEEee
Confidence               0001115555566889999999885  2  455666666665444333221 11  2346888875

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.86  E-value=0.018  Score=49.74  Aligned_cols=98  Identities=18%  Similarity=0.198  Sum_probs=54.0

Q ss_pred             ceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCC-CChhhH---Hhh-Ccccccccc-cc-cCCC------CCcchhhhh
Q 027471           71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPII---YER-GLFGLYHDW-CE-SFNT------YPRTYDLLH  137 (223)
Q Consensus        71 iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~-~~l~~i---~eR-GLi~~~~dw-ce-~f~t------yPrtyDllH  137 (223)
                      -++|||+.||+|+|+.+++..+--|.+|   |.. ..++.+   ++. |+-..-+.+ |+ .|..      ..+.||+|=
T Consensus       133 ~~rVLdlf~~tG~~sl~aa~~GA~V~~V---D~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii  209 (309)
T d2igta1         133 PLKVLNLFGYTGVASLVAAAAGAEVTHV---DASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  209 (309)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTCEEEEE---CSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCeEEEecCCCcHHHHHHHhCCCeEEEE---eChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence            4589999999999999998887655555   332 122222   222 553211111 11 2222      237899987


Q ss_pred             hhhh-hccccc------ccchhHHHHhhhhcccCCcEEEEe
Q 027471          138 ADHL-FSTIKK------RCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       138 ~~~l-fs~~~~------rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      ++-= |....+      +-.+..++..+-++|+|||.+++.
T Consensus       210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~  250 (309)
T d2igta1         210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL  250 (309)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred             ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence            6411 221111      011224555677899999976554

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=93.61  E-value=0.11  Score=43.49  Aligned_cols=139  Identities=17%  Similarity=0.167  Sum_probs=74.9

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHh----------hCcccccc-cccccCCCCCcchhhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYE----------RGLFGLYH-DWCESFNTYPRTYDLL  136 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~e----------RGLi~~~~-dwce~f~tyPrtyDll  136 (223)
                      ..-++||-+|.|.|+.++.+.+. ++--+.++..+.. -++++.+          .--+-++. |--+-+...++.||+|
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~-Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGK-VIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHH-HHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHH-HHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            45789999999999999999886 4544444443332 1111111          11111222 2111122256889998


Q ss_pred             hhhhhhcccccccc--hhHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCeeEEee------cCCCeeEE
Q 027471          137 HADHLFSTIKKRCS--LKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMIY------TNDNQGML  203 (223)
Q Consensus       137 H~~~lfs~~~~rC~--i~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~~~~~------~~~~e~~L  203 (223)
                      -.+ ++.....-..  -..+...+.|.|+|||.++..-.     .+....+.+-++..=-.+....      ..+.-.++
T Consensus       153 i~D-~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f~  231 (274)
T d1iy9a_         153 MVD-STEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFT  231 (274)
T ss_dssp             EES-CSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEE
T ss_pred             EEc-CCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEEE
Confidence            776 3332221111  12677889999999999998622     2233344443443323333221      12345788


Q ss_pred             EEEecc
Q 027471          204 CVHKTY  209 (223)
Q Consensus       204 ~~~K~~  209 (223)
                      +|.|..
T Consensus       232 ~aS~~~  237 (274)
T d1iy9a_         232 IGSKKY  237 (274)
T ss_dssp             EEESSC
T ss_pred             EEcCCC
Confidence            888764

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.48  E-value=0.063  Score=46.21  Aligned_cols=139  Identities=14%  Similarity=0.130  Sum_probs=72.7

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHh----------hCcccc-cccccccCCCCCcchhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYE----------RGLFGL-YHDWCESFNTYPRTYDL  135 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~e----------RGLi~~-~~dwce~f~tyPrtyDl  135 (223)
                      ...-++||-+|.|-|+.++.+.+. +|--+.++..+.. -++++.+          .--+-+ +.|-=+-+...++.||+
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~-Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDv  182 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEM-VIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDV  182 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHH-HHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHH-HHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence            456789999999999999999986 4544444444432 1111111          000111 11111111124678999


Q ss_pred             hhhhhhhccccc--ccchhHHHHhhhhcccCCcEEEEec-----cHHHHHHHHHHHHhCCCeeEEeec------CCCeeE
Q 027471          136 LHADHLFSTIKK--RCSLKAVVAEVDRILRPDGNLILRD-----DAETIVEVEDLVKSLHWDVRMIYT------NDNQGM  202 (223)
Q Consensus       136 lH~~~lfs~~~~--rC~i~~vl~E~DRILRPgG~~ii~D-----~~~~~~~i~~i~~~l~W~~~~~~~------~~~e~~  202 (223)
                      |-++ ++.....  ..--..++..+.|+|+|||.++..-     ..+....+.+.+++.=..+.....      .+.-.+
T Consensus       183 II~D-~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f  261 (312)
T d2b2ca1         183 IITD-SSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGY  261 (312)
T ss_dssp             EEEC-CC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEE
T ss_pred             EEEc-CCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCcccee
Confidence            8775 2321111  1111267889999999999999962     222334444444443334432211      234468


Q ss_pred             EEEEec
Q 027471          203 LCVHKT  208 (223)
Q Consensus       203 L~~~K~  208 (223)
                      ++|.|.
T Consensus       262 ~~aSk~  267 (312)
T d2b2ca1         262 LICAKN  267 (312)
T ss_dssp             EEEESS
T ss_pred             eEEECC
Confidence            888875

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.35  E-value=0.014  Score=46.00  Aligned_cols=42  Identities=17%  Similarity=0.373  Sum_probs=35.3

Q ss_pred             cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471          131 RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD  173 (223)
Q Consensus       131 rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~  173 (223)
                      +.||+|-|-+++....+. ....++..+.+.|+|||++++-..
T Consensus       131 ~~fDvI~CRNVLiYf~~~-~~~~vl~~l~~~L~pGG~L~lG~s  172 (193)
T d1af7a2         131 GPFDAIFCRNVMIYFDKT-TQEDILRRFVPLLKPDGLLFAGHS  172 (193)
T ss_dssp             CCEEEEEECSSGGGSCHH-HHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             CCccEEEeehhHHhcCHH-HHHHHHHHHHHHhCCCcEEEEecC
Confidence            789999999999877642 346899999999999999999743

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.035  Score=46.99  Aligned_cols=102  Identities=17%  Similarity=0.156  Sum_probs=58.8

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHh----------hCcccccc-cccccCCCCCcchhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYE----------RGLFGLYH-DWCESFNTYPRTYDL  135 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~e----------RGLi~~~~-dwce~f~tyPrtyDl  135 (223)
                      ...-++||-+|.|.|+.++.+.+. ++--+.++..+.. -++++.+          ---+-+++ |-=+-+..-+++||+
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~-Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDED-VIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV  154 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHH-HHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHH-HHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence            345689999999999999999987 4544444544421 1121111          11111222 211122235678999


Q ss_pred             hhhhhhhcccccccch--hHHHHhhhhcccCCcEEEEe
Q 027471          136 LHADHLFSTIKKRCSL--KAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       136 lH~~~lfs~~~~rC~i--~~vl~E~DRILRPgG~~ii~  171 (223)
                      |-++ +|+....-..+  ...+..+.|.|+|||.+++.
T Consensus       155 Ii~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         155 IITD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             EEEE-CC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEc-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence            8886 34322211111  16788899999999999996

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.04  E-value=0.064  Score=44.78  Aligned_cols=102  Identities=17%  Similarity=0.105  Sum_probs=56.9

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHh-----hCc-----------ccccccccccCCCCCc
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYE-----RGL-----------FGLYHDWCESFNTYPR  131 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~e-----RGL-----------i~~~~dwce~f~tyPr  131 (223)
                      ..+-++||-+|+|.|+.+..+.+.+..=+.++..+.. -++++.+     .|.           +-++++-+..|-.=.+
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~-Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDED-VIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHH-HHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHH-HHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            4567899999999999999988886533334444321 2222211     010           0111110000000136


Q ss_pred             chhhhhhhhhhccccc--ccchhHHHHhhhhcccCCcEEEEe
Q 027471          132 TYDLLHADHLFSTIKK--RCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       132 tyDllH~~~lfs~~~~--rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      +||+|-++ +|.....  ..--...+..+.|.|+|||.++..
T Consensus       149 ~yDvIi~D-~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         149 GFDVIIAD-STDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             CEEEEEEE-CCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEEe-CCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            79998765 3432221  111136788999999999999985

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=0.041  Score=46.06  Aligned_cols=124  Identities=10%  Similarity=0.130  Sum_probs=64.7

Q ss_pred             CCCCceEEEeeCCchHHHHHHhhC---C-CeEEEEecCCCCCCChhhHHhhCcccccccccccC-CC--CCcchhhhhh-
Q 027471           67 NWSFVRNVMDMRAVYGGFAAALKD---L-KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF-NT--YPRTYDLLHA-  138 (223)
Q Consensus        67 ~~~~iRnvLDmgaG~GgFAA~L~~---~-~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f-~t--yPrtyDllH~-  138 (223)
                      +...-.+||||-|+-||=+.+|++   . .|++..+.+.-.....+.+-.-|+-......-... ..  .+..||.|=+ 
T Consensus        99 ~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~D  178 (284)
T d1sqga2          99 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD  178 (284)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEe
Confidence            344456899999999997666543   2 25555554432222233333445432111100111 11  3366777432 


Q ss_pred             -----hhhhcc-------ccc--ccch---h-HHHHhhhhcccCCcEEEEe----ccHHHHHHHHHHHHh-CCCe
Q 027471          139 -----DHLFST-------IKK--RCSL---K-AVVAEVDRILRPDGNLILR----DDAETIVEVEDLVKS-LHWD  190 (223)
Q Consensus       139 -----~~lfs~-------~~~--rC~i---~-~vl~E~DRILRPgG~~ii~----D~~~~~~~i~~i~~~-l~W~  190 (223)
                           .+.+..       +..  ...+   + .+|...-+.|||||++|.+    .+.+.-..|+.++++ -.++
T Consensus       179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~  253 (284)
T d1sqga2         179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAE  253 (284)
T ss_dssp             CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCE
T ss_pred             ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCcE
Confidence                 222211       010  0111   1 7888889999999999998    444455566666554 3444

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=92.92  E-value=0.031  Score=46.59  Aligned_cols=139  Identities=10%  Similarity=0.079  Sum_probs=66.7

Q ss_pred             CCCceEEEeeCCchHHHHHHhhC----CCeEEEEecCCCC-CCChhhHH----hhCccc-ccccccccCCCCC-cchhhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKD----LKVWVMNVVPIES-PDTLPIIY----ERGLFG-LYHDWCESFNTYP-RTYDLL  136 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~----~~V~vmnv~p~~~-~~~l~~i~----eRGLi~-~~~dwce~f~tyP-rtyDll  136 (223)
                      ...--+|+|.+||.|+|..++.+    +.-.-.++.-.+- +....++.    -.|.-. .++  +..+...+ ..||+|
T Consensus       115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~v  192 (328)
T d2f8la1         115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH--QDGLANLLVDPVDVV  192 (328)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE--SCTTSCCCCCCEEEE
T ss_pred             CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhc--ccccccccccccccc
Confidence            34467899999999999877642    2211112211111 11222111    112211 222  12333444 779987


Q ss_pred             hhhhhhccccc--------------ccchh-HHHHhhhhcccCCcEEEEeccHH-----HHHHHHHHHHhCCCeeEEee-
Q 027471          137 HADHLFSTIKK--------------RCSLK-AVVAEVDRILRPDGNLILRDDAE-----TIVEVEDLVKSLHWDVRMIY-  195 (223)
Q Consensus       137 H~~~lfs~~~~--------------rC~i~-~vl~E~DRILRPgG~~ii~D~~~-----~~~~i~~i~~~l~W~~~~~~-  195 (223)
                      =+.-=|+....              .-.+. .++.-+-+.|+|||.+++=-+..     .-..+.+.+-.-++-..+.+ 
T Consensus       193 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~l  272 (328)
T d2f8la1         193 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKL  272 (328)
T ss_dssp             EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEEC
T ss_pred             ccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEEC
Confidence            77655542210              11122 24555789999999865532221     23455554333333222221 


Q ss_pred             -------cCCCeeEEEEEec
Q 027471          196 -------TNDNQGMLCVHKT  208 (223)
Q Consensus       196 -------~~~~e~~L~~~K~  208 (223)
                             +.-+--+|+.+|+
T Consensus       273 p~~~F~~~~~~t~ilvl~K~  292 (328)
T d2f8la1         273 PETLFKSEQARKSILILEKA  292 (328)
T ss_dssp             CGGGSCC-CCCEEEEEEEEC
T ss_pred             CccccCCCCCCeEEEEEECC
Confidence                   1224567888775

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.71  E-value=0.033  Score=47.43  Aligned_cols=123  Identities=14%  Similarity=0.145  Sum_probs=63.6

Q ss_pred             CCCCCCceEEEeeCCchHHHHHHh---hC-CC-eEEEEecCCCCCCChh-hHHhhCccccccccccc--CCCCCcchhhh
Q 027471           65 GINWSFVRNVMDMRAVYGGFAAAL---KD-LK-VWVMNVVPIESPDTLP-IIYERGLFGLYHDWCES--FNTYPRTYDLL  136 (223)
Q Consensus        65 ~i~~~~iRnvLDmgaG~GgFAA~L---~~-~~-V~vmnv~p~~~~~~l~-~i~eRGLi~~~~dwce~--f~tyPrtyDll  136 (223)
                      +...|  -.||||-||-||=+..|   .+ ++ |++..+.+.-.. .++ ....-|+..+..-....  ++.++..||.|
T Consensus       113 ~~~~g--~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~-~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~I  189 (313)
T d1ixka_         113 DPKPG--EIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLR-ETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKI  189 (313)
T ss_dssp             CCCTT--CEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHH-HHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEE
T ss_pred             cCCcc--ceeeecccchhhhhHhhhhhcccccceeeeccCHHHHH-HHHHHHHHHHhhccccccccccccccccccccEE
Confidence            34444  47999999999944444   33 33 333333222111 222 23334554433221122  22245678873


Q ss_pred             ----hhhhh--hcc-----cc-cccchh-------HHHHhhhhcccCCcEEEEe----ccHHHHHHHHHHHHhCCCe
Q 027471          137 ----HADHL--FST-----IK-KRCSLK-------AVVAEVDRILRPDGNLILR----DDAETIVEVEDLVKSLHWD  190 (223)
Q Consensus       137 ----H~~~l--fs~-----~~-~rC~i~-------~vl~E~DRILRPgG~~ii~----D~~~~~~~i~~i~~~l~W~  190 (223)
                          -|++.  +..     +. ..-.+.       .+|...-+.|||||++|.+    .+.+.-..|+.+++....+
T Consensus       190 LvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~  266 (313)
T d1ixka_         190 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE  266 (313)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred             EEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCE
Confidence                34322  210     00 000011       7888999999999999997    4444455666666665443

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.88  E-value=0.029  Score=47.87  Aligned_cols=140  Identities=10%  Similarity=0.051  Sum_probs=73.4

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHhh------Cc----cc-ccccccccCCCCCcchhh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYER------GL----FG-LYHDWCESFNTYPRTYDL  135 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~eR------GL----i~-~~~dwce~f~tyPrtyDl  135 (223)
                      ...-++||=+|.|-|+.++.+.+. ++.-+.++..+.. -++++.+-      ++    +- .+.|.-+-+...++.||+
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~-Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  165 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGL-VIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDV  165 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHH-HHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHH-HHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence            345789999999999999999887 3433333333321 12222110      11    11 122222223336788999


Q ss_pred             hhhhhhhccc-ccccc--hhHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCeeEEee----c--CCCee
Q 027471          136 LHADHLFSTI-KKRCS--LKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMIY----T--NDNQG  201 (223)
Q Consensus       136 lH~~~lfs~~-~~rC~--i~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~~~~~----~--~~~e~  201 (223)
                      |-++ ++... ..-+.  -..++..+.|.|+|||.++..-.     .+....+-+-+++.=-.+....    +  .+.-.
T Consensus       166 Ii~D-~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~~vPtyp~G~w~  244 (295)
T d1inla_         166 IIID-STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWS  244 (295)
T ss_dssp             EEEE-C----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEE
T ss_pred             EEEc-CCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEeeeceecCcccE
Confidence            8876 33321 11111  23788899999999999998522     2222222222233322332221    1  23447


Q ss_pred             EEEEEecc
Q 027471          202 MLCVHKTY  209 (223)
Q Consensus       202 ~L~~~K~~  209 (223)
                      +.+|.|..
T Consensus       245 f~~aSk~~  252 (295)
T d1inla_         245 YTFASKGI  252 (295)
T ss_dssp             EEEEESSC
T ss_pred             EEEEeCCC
Confidence            88898864

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=91.69  E-value=0.16  Score=41.59  Aligned_cols=97  Identities=18%  Similarity=0.185  Sum_probs=49.1

Q ss_pred             eEEEeeCCchHHHHHHhh--------CCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCC---CC-cchhhhhhh
Q 027471           72 RNVMDMRAVYGGFAAALK--------DLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT---YP-RTYDLLHAD  139 (223)
Q Consensus        72 RnvLDmgaG~GgFAA~L~--------~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t---yP-rtyDllH~~  139 (223)
                      .+||.+|++.|+-++.++        +-.|..+.+-+...... ..-.+|  +-++.--+-...+   .. ..+|+|+-+
T Consensus        82 k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-~~~~~~--I~~i~gDs~~~~~~~~l~~~~~dlIfID  158 (232)
T d2bm8a1          82 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-ASDMEN--ITLHQGDCSDLTTFEHLREMAHPLIFID  158 (232)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-GGGCTT--EEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred             CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-hccccc--eeeeecccccHHHHHHHHhcCCCEEEEc
Confidence            479999999998655443        12455555533221110 001111  2223211212222   22 457777554


Q ss_pred             hhhcccccccchhHHHHhhhhcccCCcEEEEeccHHH
Q 027471          140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAET  176 (223)
Q Consensus       140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~  176 (223)
                      +-  |..... +..  ++....|+|||++|+.|....
T Consensus       159 ~~--H~~~~v-~~~--~~~~~lLk~GG~iIveD~i~~  190 (232)
T d2bm8a1         159 NA--HANTFN-IMK--WAVDHLLEEGDYFIIEDMIPY  190 (232)
T ss_dssp             SS--CSSHHH-HHH--HHHHHTCCTTCEEEECSCHHH
T ss_pred             CC--cchHHH-HHH--HHHhcccCcCCEEEEEcCCcc
Confidence            32  111111 112  256789999999999998653

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.48  E-value=0.082  Score=44.63  Aligned_cols=102  Identities=17%  Similarity=0.184  Sum_probs=60.5

Q ss_pred             CCCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHh----------hCccc-ccccccccCCCCC-cchh
Q 027471           68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYE----------RGLFG-LYHDWCESFNTYP-RTYD  134 (223)
Q Consensus        68 ~~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~e----------RGLi~-~~~dwce~f~tyP-rtyD  134 (223)
                      ..+-++||=+|.|-|+.++++.+. ++--+.++..+.. -++++.+          ---+- ++.|--+-+...+ +.||
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~-Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD  156 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKM-VVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD  156 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHH-HHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHH-HHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence            356789999999999999999887 5544444444421 1111111          11111 2223222222355 6899


Q ss_pred             hhhhhhhhcccc--cccchhHHHHhhhhcccCCcEEEEe
Q 027471          135 LLHADHLFSTIK--KRCSLKAVVAEVDRILRPDGNLILR  171 (223)
Q Consensus       135 llH~~~lfs~~~--~rC~i~~vl~E~DRILRPgG~~ii~  171 (223)
                      +|-.+ +|....  ...--...+..+.|+|+|||.++..
T Consensus       157 vIi~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  194 (290)
T d1xj5a_         157 AVIVD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  194 (290)
T ss_dssp             EEEEC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEc-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence            98764 443222  1111237888999999999999996

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=86.57  E-value=0.66  Score=35.74  Aligned_cols=60  Identities=13%  Similarity=0.035  Sum_probs=40.8

Q ss_pred             hhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEE--e-e------------cCCCeeEEEEEeccc
Q 027471          151 LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM--I-Y------------TNDNQGMLCVHKTYW  210 (223)
Q Consensus       151 i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~--~-~------------~~~~e~~L~~~K~~w  210 (223)
                      +..++.|+.|+|+|||.+++-........+...+....|...-  . .            ....|-+++..|.-.
T Consensus        53 ~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~iiW~k~~~~~~~~~~~~~~~e~i~~~~k~~~  127 (256)
T d1g60a_          53 TYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMGSAKRRFSTGQETILFFSKSKN  127 (256)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHTTCEEEEEEEECCCCSCCCCSSSCBCCCEEEEEEESSTT
T ss_pred             HHHHHHHhhhccccCcccccccCchhhhhhhhhhhcccceeeeeeEeeecccccccccccccceeeeeccccCcc
Confidence            3478999999999999998766666666666666666666431  1 0            113578888888654

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=84.07  E-value=1.8  Score=35.77  Aligned_cols=116  Identities=20%  Similarity=0.243  Sum_probs=65.9

Q ss_pred             CCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc--ccc-cccccCCCC---Ccchhhhhhhh
Q 027471           69 SFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG--LYH-DWCESFNTY---PRTYDLLHADH  140 (223)
Q Consensus        69 ~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~-dwce~f~ty---PrtyDllH~~~  140 (223)
                      ..-..|+|+-||.|.|+..|+++  .|+.+-.++........-+..-|+-.  .++ +--+.+...   ...||++=.+ 
T Consensus       211 ~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD-  289 (358)
T d1uwva2         211 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD-  289 (358)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC-
T ss_pred             CCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC-
Confidence            34568999999999999999987  56666554432222222222234321  122 111122222   2556765443 


Q ss_pred             hhcccccccchhHHHHhhhhcccCCcEEEEeccHHH-HHHHHHHHHhCCCeeE
Q 027471          141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVR  192 (223)
Q Consensus       141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~-~~~i~~i~~~l~W~~~  192 (223)
                           .+|..+..++.++-+ ++|.=.++++=++.+ ...++.+.+. .|++.
T Consensus       290 -----PPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l~~~-gy~l~  335 (358)
T d1uwva2         290 -----PARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKA-GYTIA  335 (358)
T ss_dssp             -----CCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHHT-TCEEE
T ss_pred             -----CCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHC-CCeEe
Confidence                 346556667777665 489889999955555 4556665443 46554

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.75  E-value=0.37  Score=39.23  Aligned_cols=124  Identities=8%  Similarity=-0.029  Sum_probs=68.5

Q ss_pred             CCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc---ccc-cccccC-CC----CCcch
Q 027471           67 NWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG---LYH-DWCESF-NT----YPRTY  133 (223)
Q Consensus        67 ~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~-dwce~f-~t----yPrty  133 (223)
                      ......+|||+|||+|.-+..|+.+    .|....+.|..-.-..+-+..-||-.   ++| +|-+.+ +.    ....|
T Consensus        58 ~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~f  137 (250)
T d2h00a1          58 DKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIY  137 (250)
T ss_dssp             GGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             CccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCce
Confidence            3456788999999999988888765    56666664432211111112223322   222 221221 11    12578


Q ss_pred             hhhhhhhhhcccc-----------------------c---------ccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHH
Q 027471          134 DLLHADHLFSTIK-----------------------K---------RCSLKAVVAEVDRILRPDGNLILR-DDAETIVEV  180 (223)
Q Consensus       134 DllH~~~lfs~~~-----------------------~---------rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i  180 (223)
                      |+|=|.-=|-...                       .         -.-+..++.|.-+.++..|++..- -..+.+..|
T Consensus       138 D~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i  217 (250)
T d2h00a1         138 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPL  217 (250)
T ss_dssp             SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHH
T ss_pred             eEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHH
Confidence            8865543332100                       0         011446778888899999988543 334556677


Q ss_pred             HHHHHhCCCe
Q 027471          181 EDLVKSLHWD  190 (223)
Q Consensus       181 ~~i~~~l~W~  190 (223)
                      .++++.....
T Consensus       218 ~~~L~~~g~~  227 (250)
T d2h00a1         218 KEELRIQGVP  227 (250)
T ss_dssp             HHHHHHTTCS
T ss_pred             HHHHHHcCCC
Confidence            7887777764

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.85  E-value=0.036  Score=43.93  Aligned_cols=123  Identities=13%  Similarity=0.078  Sum_probs=62.9

Q ss_pred             hccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhC--cccccccccccCCC----CC-cc
Q 027471           62 NGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERG--LFGLYHDWCESFNT----YP-RT  132 (223)
Q Consensus        62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRG--Li~~~~dwce~f~t----yP-rt  132 (223)
                      +.|.+..|.  +++|..+|.||-.+++.+++  |..+..-|.    .+..+-++-  -+..+|..+..|..    +. ..
T Consensus        12 ~~l~~~~g~--~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~----ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~   85 (182)
T d1wg8a2          12 DLLAVRPGG--VYVDATLGGAGHARGILERGGRVIGLDQDPE----AVARAKGLHLPGLTVVQGNFRHLKRHLAALGVER   85 (182)
T ss_dssp             HHHTCCTTC--EEEETTCTTSHHHHHHHHTTCEEEEEESCHH----HHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred             HhcCCCCCC--EEEEeCCCCcHHHHHHhcccCcEEEEhhhhh----HHHHHhhccccceeEeehHHHHHHHHHHHcCCCc
Confidence            345555554  59999999999999998884  444444321    233222211  13466643333222    22 22


Q ss_pred             hhhhhhhhhhcccc----cc--cchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCe
Q 027471          133 YDLLHADHLFSTIK----KR--CSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWD  190 (223)
Q Consensus       133 yDllH~~~lfs~~~----~r--C~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~  190 (223)
                      +|.|=.+.=.|..+    +|  ..+...|.-...+|+|||.+++-.-.. ....++++++.-.++
T Consensus        86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k  150 (182)
T d1wg8a2          86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLK  150 (182)
T ss_dssp             EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSE
T ss_pred             cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccce
Confidence            33322111011110    11  112244555588999999998754333 334566666654444