Citrus Sinensis ID: 027477

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
MRREISGFVRTRYLLLFVLIFVFLIAAFSSRRKEEEKEEDVFEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKWDEER
ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccEEEEEEEccEEEEEEEEEEccccccHHHHHHHHHHHccccccccccccccccccccEEccccEEccccccccccccccccccccccccccccccccccEEEccccccccccccEEEEccccccccccccEEEEEEEcHHHHHHHHcccccccccccccEEEEEccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccccEEEEEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccEcccccEccccccEccEEEcccEEEEccccccccccccccccccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEcccccEcccEEEEEEEEEEEEEccccc
MRREISGFVRTRYLLLFVLIFVFLIAAFSsrrkeeekeeDVFEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALctgekgtgasgkplhfkgkpfhrIVSGFViqggdivrgdgkgsdsiyggtfpdenfkikhsHAGVVSMvnsgpdsngsqFFITTVKaswldgehvVFGKVIQGMDTVYAIeggagtysgkprkkvtiadsgeipknkwdeer
mrreisgfvrtRYLLLFVLIFVFLIAAfssrrkeeekeedvfeithrvyldvdieeqRLGRIVIGLYGQVVPKTVENFRALCTgekgtgasgkplhFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGgagtysgkprkkvtiadsgeipknkwdeer
MRREISGFVRTRYlllfvlifvfliaafssrrkeeekeeDVFEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKWDEER
*****SGFVRTRYLLLFVLIFVFLIAAFS**********DVFEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMV********SQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTY*************************
*******FVRTRYLLLFVLIFVFLIAAF*******************VYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVY****************VTIADS************
MRREISGFVRTRYLLLFVLIFVFLIAAFSS**********VFEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKWDEER
**REISGFVRTRYLLLFVLIFVFLIAAFSSRRKEEEKEEDVFEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKW****
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRREISGFVRTRYLLLFVLIFVFLIAAFSSRRKEEEKEEDVFEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKWDEER
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query223 2.2.26 [Sep-21-2011]
Q8LDP4201 Peptidyl-prolyl cis-trans no no 0.896 0.995 0.600 1e-66
Q9SP02204 Peptidyl-prolyl cis-trans no no 0.816 0.892 0.606 4e-62
Q9TW32197 Peptidyl-prolyl cis-trans yes no 0.874 0.989 0.565 2e-59
Q6C4W6228 Peptidyl-prolyl cis-trans yes no 0.883 0.864 0.546 3e-57
P52015171 Peptidyl-prolyl cis-trans yes no 0.748 0.976 0.607 1e-56
P52011173 Peptidyl-prolyl cis-trans no no 0.748 0.965 0.607 4e-55
P34790172 Peptidyl-prolyl cis-trans no no 0.748 0.970 0.577 5e-53
Q9ASS6259 Peptidyl-prolyl cis-trans no no 0.816 0.702 0.541 9e-53
Q01490203 Peptidyl-prolyl cis-trans N/A no 0.780 0.857 0.558 1e-52
Q9SKQ0174 Peptidyl-prolyl cis-trans no no 0.748 0.959 0.589 1e-52
>sp|Q8LDP4|CP19D_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2 Back     alignment and function desciption
 Score =  252 bits (644), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/208 (60%), Positives = 152/208 (73%), Gaps = 8/208 (3%)

Query: 8   FVRTRYLLLFVLIFVFLIAAFSSRRKEEEKEEDVFEITHRVYLDVDIEEQRLGRIVIGLY 67
             +  ++LL  L   FL  A +S     + +ED+ E+TH+VY DV+I+ +  GR+VIGL+
Sbjct: 1   MAKASFILLGTL---FLFGAIASI----QAKEDLKEVTHKVYFDVEIDGKSAGRVVIGLF 53

Query: 68  GQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSI 127
           G+ VPKT ENFRALCTGEKG G SGKPLH+KG  FHRI+  F+IQGGD   G+G G +SI
Sbjct: 54  GKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESI 113

Query: 128 YGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDT 187
           YG  F DENFK+KH+  GV+SM NSG D+NGSQFFITTV  SWLDG HVVFGKV+QGMD 
Sbjct: 114 YGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDV 173

Query: 188 VYAIEGGAGTYSGKPRKKVTIADSGEIP 215
           VY IE   G  SG P+ KV IADSGE+P
Sbjct: 174 VYKIE-AEGKQSGTPKSKVVIADSGELP 200
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved during embryogenesis and organ development by regulating the folding of EMB30/GNOM, and thus, by modulating its activity.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|Q9SP02|CP20A_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1 Back     alignment and function description
>sp|Q9TW32|PPIB_DICDI Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1 Back     alignment and function description
>sp|Q6C4W6|PPIB_YARLI Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CPR2 PE=3 SV=1 Back     alignment and function description
>sp|P52015|CYP7_CAEEL Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2 Back     alignment and function description
>sp|P52011|CYP3_CAEEL Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1 Back     alignment and function description
>sp|P34790|CP18C_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1 Back     alignment and function description
>sp|Q9ASS6|CP20B_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1 Back     alignment and function description
>sp|Q01490|PPIB_ORPSP Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1 Back     alignment and function description
>sp|Q9SKQ0|CP19B_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
388494638223 unknown [Medicago truncatula] 0.995 0.995 0.788 9e-99
157890960223 putative peptidyl-prolyl cis-trans isome 0.991 0.991 0.763 3e-96
224105187225 predicted protein [Populus trichocarpa] 0.959 0.951 0.795 1e-95
388493324223 unknown [Lotus japonicus] 0.995 0.995 0.779 7e-95
255586434219 peptidyl-prolyl cis-trans isomerase, put 0.950 0.968 0.844 3e-94
297802462224 hypothetical protein ARALYDRAFT_491161 [ 1.0 0.995 0.785 1e-93
449458594223 PREDICTED: peptidyl-prolyl cis-trans iso 0.995 0.995 0.788 6e-93
15236227224 Cyclophilin-like peptidyl-prolyl cis-tra 0.995 0.991 0.782 1e-92
356538626236 PREDICTED: peptidyl-prolyl cis-trans iso 0.995 0.940 0.731 1e-89
356516605221 PREDICTED: LOW QUALITY PROTEIN: peptidyl 0.991 1.0 0.762 2e-89
>gi|388494638|gb|AFK35385.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
 Score =  365 bits (936), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 175/222 (78%), Positives = 198/222 (89%)

Query: 1   MRREISGFVRTRYLLLFVLIFVFLIAAFSSRRKEEEKEEDVFEITHRVYLDVDIEEQRLG 60
           MRREI+   + R+L+L +++ +F+I AFSS +  +EK E+  EITHRV+LD+DI++QRLG
Sbjct: 1   MRREIAFLAQPRFLILLLVLSIFIIFAFSSSKLADEKTEEEPEITHRVFLDIDIDKQRLG 60

Query: 61  RIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGD 120
           RIVIGLYGQVVPKTVENFRALCTGEKG  ASG  LH+KG PFHRIVSGFVIQGGDIV  D
Sbjct: 61  RIVIGLYGQVVPKTVENFRALCTGEKGESASGVKLHYKGTPFHRIVSGFVIQGGDIVHRD 120

Query: 121 GKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGK 180
           GK S+SIYGGTFPDENF+IKHSHAGVVSM NSGPDSNGSQFF TTVKASWLDG+HVVFGK
Sbjct: 121 GKASESIYGGTFPDENFRIKHSHAGVVSMANSGPDSNGSQFFFTTVKASWLDGDHVVFGK 180

Query: 181 VIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKWDEE 222
           V+QGMDTV+AIEGGAGTYSGKPRKKV IADSGEIPK+KWDEE
Sbjct: 181 VVQGMDTVFAIEGGAGTYSGKPRKKVVIADSGEIPKSKWDEE 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|157890960|dbj|BAF81521.1| putative peptidyl-prolyl cis-trans isomerase [Brassica rapa] Back     alignment and taxonomy information
>gi|224105187|ref|XP_002313720.1| predicted protein [Populus trichocarpa] gi|222850128|gb|EEE87675.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388493324|gb|AFK34728.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255586434|ref|XP_002533862.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] gi|223526199|gb|EEF28526.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297802462|ref|XP_002869115.1| hypothetical protein ARALYDRAFT_491161 [Arabidopsis lyrata subsp. lyrata] gi|297314951|gb|EFH45374.1| hypothetical protein ARALYDRAFT_491161 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449458594|ref|XP_004147032.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4-like [Cucumis sativus] gi|449489666|ref|XP_004158380.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15236227|ref|NP_195222.1| Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] gi|2924507|emb|CAA17761.1| cyclophilin-like protein [Arabidopsis thaliana] gi|7270447|emb|CAB80213.1| cyclophilin-like protein [Arabidopsis thaliana] gi|26450419|dbj|BAC42324.1| putative cyclophilin like protein ROC14 [Arabidopsis thaliana] gi|28827322|gb|AAO50505.1| putative cyclophilin [Arabidopsis thaliana] gi|45680864|gb|AAS75301.1| single domain cyclophilin type peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gi|332661041|gb|AEE86441.1| Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356538626|ref|XP_003537802.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4-like [Glycine max] Back     alignment and taxonomy information
>gi|356516605|ref|XP_003526984.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase CYP19-4-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
TAIR|locus:2131546224 AT4G34960 [Arabidopsis thalian 0.811 0.808 0.861 1.7e-84
TAIR|locus:2045663201 CYP5 "cyclophilin 5" [Arabidop 0.784 0.870 0.664 1.1e-62
TAIR|locus:2178863204 ROC7 "rotamase CYP 7" [Arabido 0.771 0.843 0.635 3.5e-59
TAIR|locus:2081993228 AT3G55920 [Arabidopsis thalian 0.780 0.763 0.628 1.7e-57
DICTYBASE|DDB_G0269120197 cypB "cyclophilin B" [Dictyost 0.766 0.868 0.627 7.5e-57
WB|WBGene00000883171 cyn-7 [Caenorhabditis elegans 0.748 0.976 0.607 1.3e-54
WB|WBGene00000879173 cyn-3 [Caenorhabditis elegans 0.748 0.965 0.607 1.9e-53
UNIPROTKB|P52011173 cyn-3 "Peptidyl-prolyl cis-tra 0.748 0.965 0.607 1.9e-53
TAIR|locus:2141747172 ROC1 "rotamase CYP 1" [Arabido 0.748 0.970 0.577 1.5e-51
TAIR|locus:2047097174 AT2G21130 [Arabidopsis thalian 0.748 0.959 0.589 4e-51
TAIR|locus:2131546 AT4G34960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 156/181 (86%), Positives = 170/181 (93%)

Query:    43 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPF 102
             EIT+RV+LDVDI+ QRLGRIVIGLYG VVPKTVENFRALCTGEKG  +SGKPLH+KG PF
Sbjct:    44 EITNRVFLDVDIDGQRLGRIVIGLYGTVVPKTVENFRALCTGEKGKTSSGKPLHYKGTPF 103

Query:   103 HRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFF 162
             HRI+SGFVIQGGDI+ GDGK SDSIYGGTFPDENFKI+HSHAG+V+M N+GPDSNGSQFF
Sbjct:   104 HRIISGFVIQGGDIIHGDGKSSDSIYGGTFPDENFKIQHSHAGMVAMANTGPDSNGSQFF 163

Query:   163 ITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKWDEE 222
             ITTVKASWL+GEHVV GKVIQGMD V+AIEGGAGTYSGKPRKKV IADSGEIPK+KWDEE
Sbjct:   164 ITTVKASWLEGEHVVLGKVIQGMDNVFAIEGGAGTYSGKPRKKVVIADSGEIPKDKWDEE 223

Query:   223 R 223
             R
Sbjct:   224 R 224
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2045663 CYP5 "cyclophilin 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178863 ROC7 "rotamase CYP 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081993 AT3G55920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269120 cypB "cyclophilin B" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00000883 cyn-7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00000879 cyn-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P52011 cyn-3 "Peptidyl-prolyl cis-trans isomerase 3" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2141747 ROC1 "rotamase CYP 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047097 AT2G21130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0CP78PPIB_CRYNJ5, ., 2, ., 1, ., 80.49760.91920.8874yesno
Q9TW32PPIB_DICDI5, ., 2, ., 1, ., 80.5650.87440.9898yesno
O94273PPIB_SCHPO5, ., 2, ., 1, ., 80.47360.86990.9651yesno
P45877PPIC_HUMAN5, ., 2, ., 1, ., 80.53690.86990.9150yesno
Q6C4W6PPIB_YARLI5, ., 2, ., 1, ., 80.54630.88340.8640yesno
P80311PPIB_BOVIN5, ., 2, ., 1, ., 80.52680.85200.8796yesno
P52015CYP7_CAEEL5, ., 2, ., 1, ., 80.60710.74880.9766yesno
Q4I5R9PPIB_GIBZE5, ., 2, ., 1, ., 80.54060.73990.6653yesno
Q4WP12PPIB_ASPFU5, ., 2, ., 1, ., 80.49740.86090.9186yesno
P24367PPIB_CHICK5, ., 2, ., 1, ., 80.58720.73990.7971yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.2.10.963
4th Layer5.2.1.80.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_IX0343
hypothetical protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) (225 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
cd01926164 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik 3e-89
PTZ00060183 PTZ00060, PTZ00060, cyclophilin; Provisional 1e-74
cd00317146 cd00317, cyclophilin, cyclophilin: cyclophilin-typ 2e-60
PLN03149186 PLN03149, PLN03149, peptidyl-prolyl isomerase H (c 3e-58
pfam00160144 pfam00160, Pro_isomerase, Cyclophilin type peptidy 1e-52
COG0652158 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase 1e-49
cd01927148 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo 1e-41
cd01928153 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3 1e-40
cd01923159 cd01923, cyclophilin_RING, cyclophilin_RING: cyclo 3e-38
cd01922146 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY 2e-36
cd01925171 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC 2e-32
PTZ00221249 PTZ00221, PTZ00221, cyclophilin; Provisional 4e-27
cd01921166 cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph 8e-27
cd01920155 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP 7e-17
PRK10903190 PRK10903, PRK10903, peptidyl-prolyl cis-trans isom 4e-10
PRK10791164 PRK10791, PRK10791, peptidyl-prolyl cis-trans isom 1e-09
cd01924176 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40 1e-07
>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain Back     alignment and domain information 
 Score =  259 bits (664), Expect = 3e-89
 Identities = 102/167 (61%), Positives = 126/167 (75%), Gaps = 3/167 (1%)

Query: 46  HRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRI 105
            +V+ D+ I  +  GRIV+ L+  VVPKT ENFRALCTGEKG G  GKP  +KG  FHR+
Sbjct: 1   PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKG--GKPFGYKGSTFHRV 58

Query: 106 VSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITT 165
           +  F+IQGGD  RG+G G  SIYG  FPDENFK+KH+  G++SM N+GP++NGSQFFITT
Sbjct: 59  IPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITT 118

Query: 166 VKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG 212
           VK  WLDG+HVVFGKV++GMD V  IE   G+ +GKP+KKV IAD G
Sbjct: 119 VKTPWLDGKHVVFGKVVEGMDVVKKIE-NVGSGNGKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional Back     alignment and domain information
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases Back     alignment and domain information
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional Back     alignment and domain information
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Back     alignment and domain information
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain Back     alignment and domain information
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like Back     alignment and domain information
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain Back     alignment and domain information
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2 Back     alignment and domain information
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 Back     alignment and domain information
>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional Back     alignment and domain information
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM) Back     alignment and domain information
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E Back     alignment and domain information
>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional Back     alignment and domain information
>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional Back     alignment and domain information
>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 223
KOG0880217 consensus Peptidyl-prolyl cis-trans isomerase [Pos 100.0
KOG0546 372 consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos 100.0
KOG0879177 consensus U-snRNP-associated cyclophilin type pept 100.0
PTZ00221249 cyclophilin; Provisional 100.0
PTZ00060183 cyclophilin; Provisional 100.0
cd01926164 cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph 100.0
PLN03149186 peptidyl-prolyl isomerase H (cyclophilin H); Provi 100.0
cd01923159 cyclophilin_RING cyclophilin_RING: cyclophilin-typ 100.0
KOG0111298 consensus Cyclophilin-type peptidyl-prolyl cis-tra 100.0
cd01921166 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type 100.0
KOG0881164 consensus Cyclophilin type peptidyl-prolyl cis-tra 100.0
COG0652158 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase 100.0
cd01927148 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ 100.0
cd01928153 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro 100.0
cd01925171 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: 100.0
PRK10903190 peptidyl-prolyl cis-trans isomerase A (rotamase A) 100.0
cd01922146 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c 100.0
KOG0883518 consensus Cyclophilin type, U box-containing pepti 100.0
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 100.0
PRK10791164 peptidyl-prolyl cis-trans isomerase B (rotamase B) 100.0
KOG0884161 consensus Similar to cyclophilin-type peptidyl-pro 100.0
cd01920155 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc 100.0
KOG0865167 consensus Cyclophilin type peptidyl-prolyl cis-tra 100.0
PF00160155 Pro_isomerase: Cyclophilin type peptidyl-prolyl ci 100.0
cd00317146 cyclophilin cyclophilin: cyclophilin-type peptidyl 100.0
KOG0415 479 consensus Predicted peptidyl prolyl cis-trans isom 100.0
cd01924176 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc 100.0
KOG0885 439 consensus Peptidyl-prolyl cis-trans isomerase [Pos 100.0
KOG0882 558 consensus Cyclophilin-related peptidyl-prolyl cis- 97.6
TIGR03268 503 methan_mark_3 putative methanogenesis marker prote 96.85
PRK00969 508 hypothetical protein; Provisional 96.83
TIGR03268503 methan_mark_3 putative methanogenesis marker prote 96.61
COG4070 512 Predicted peptidyl-prolyl cis-trans isomerase (rot 96.37
PRK00969508 hypothetical protein; Provisional 96.1
COG4070512 Predicted peptidyl-prolyl cis-trans isomerase (rot 93.49
PF12903147 DUF3830: Protein of unknown function (DUF3830); In 90.92
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.9e-59  Score=369.59  Aligned_cols=180  Identities=58%  Similarity=1.017  Sum_probs=170.4

Q ss_pred             hhhcccccccccceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhh-CCCCCCCCCCcccccCCceeEeeeCcEEE
Q 027477           34 EEEKEEDVFEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCT-GEKGTGASGKPLHFKGKPFHRIVSGFVIQ  112 (223)
Q Consensus        34 ~~~~~~~~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~-~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq  112 (223)
                      ...+..+.|++|++|||||.+.+...|||+|+||+..+|+||+||.+||. +.++++       |.+++||||+||||||
T Consensus        28 ~~~~~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-------Y~gS~FhRVi~nfmIQ  100 (217)
T KOG0880|consen   28 SDKKYEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG-------YKGSKFHRVIPNFMIQ  100 (217)
T ss_pred             cccccCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc-------cCCceeeeeecCceee
Confidence            34667888999999999999999999999999999999999999999999 666664       9999999999999999


Q ss_pred             ecccccCCCCCCCCCCCCCCCCCCcccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHh
Q 027477          113 GGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIE  192 (223)
Q Consensus       113 ~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~  192 (223)
                      |||.+.+++.++.++||+.|+||++.++|+++|.|||||.||++||||||||+...+|||++|+|||+|++|||+|.+|+
T Consensus       101 GGd~t~g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie  180 (217)
T KOG0880|consen  101 GGDFTKGDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIE  180 (217)
T ss_pred             cCccccCCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCcceEEeeeeeecCCCCC
Q 027477          193 GGAGTYSGKPRKKVTIADSGEIPKNKWD  220 (223)
Q Consensus       193 ~~~~~~~~~P~~~i~I~~cg~l~~~~~~  220 (223)
                      ...++.+++|.++++|.+||.|+....+
T Consensus       181 ~~~TD~~dkP~e~v~I~~~g~l~~~~~~  208 (217)
T KOG0880|consen  181 NVKTDERDKPLEDVVIANCGELPVEYLE  208 (217)
T ss_pred             hcccCCCCCccccEEEeecCcccccchh
Confidence            7788899999999999999999876543

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00221 cyclophilin; Provisional Back     alignment and domain information
>PTZ00060 cyclophilin; Provisional Back     alignment and domain information
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain Back     alignment and domain information
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional Back     alignment and domain information
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain Back     alignment and domain information
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM) Back     alignment and domain information
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain Back     alignment and domain information
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like Back     alignment and domain information
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 Back     alignment and domain information
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional Back     alignment and domain information
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2 Back     alignment and domain information
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional Back     alignment and domain information
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E Back     alignment and domain information
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms Back     alignment and domain information
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases Back     alignment and domain information
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40 Back     alignment and domain information
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3 Back     alignment and domain information
>PRK00969 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3 Back     alignment and domain information
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00969 hypothetical protein; Provisional Back     alignment and domain information
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
1dyw_A173 Biochemical And Structural Characterization Of A Di 5e-56
2hqj_A183 Cyclophilin From Leishmania Major Length = 183 9e-52
4frv_A185 Crystal Structure Of Mutated Cyclophilin B That Cau 4e-50
4fru_A185 Crystal Structure Of Horse Wild-Type Cyclophilin B 4e-50
2plu_A186 Crystal Structure Of Cryptosporidium Parvum Cycloph 8e-50
2esl_A190 Human Cyclophilin C In Complex With Cyclosporin A L 9e-50
1ihg_A 370 Bovine Cyclophilin 40, Monoclinic Form Length = 370 2e-49
1cyn_A178 Cyclophilin B Complexed With [d-(Cholinylester)ser8 4e-49
3ich_A188 Crystal Structure Of Cyclophilin B At 1.2 A Resolut 4e-49
2rmc_A182 Crystal Structure Of Murine Cyclophilin C Complexed 2e-48
1ist_A162 Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng 3e-48
1qng_A170 Plasmodium Falciparum Cyclophilin Complexed With Cy 3e-48
3r49_A166 Human Cyclophilin D Complexed With Quinolin-8-Amine 6e-48
2bit_X165 Crystal Structure Of Human Cyclophilin D At 1.7 A R 6e-48
2z6w_A165 Crystal Structure Of Human Cyclophilin D In Complex 6e-48
3qyu_A164 Crystal Structure Of Human Cyclophilin D At 1.54 A 6e-48
1qnh_A170 Plasmodium Falciparum Cyclophilin (Double Mutant) C 3e-47
2gw2_A198 Crystal Structure Of The Peptidyl-Prolyl Isomerase 5e-46
2wfi_A179 Atomic Resolution Crystal Structure Of The Ppiase D 1e-45
1c5f_A177 Crystal Structure Of The Cyclophilin-Like Domain Fr 1e-45
2xgy_B173 Complex Of Rabbit Endogenous Lentivirus (Relik)caps 1e-45
2wfj_A179 Atomic Resolution Crystal Structure Of The Ppiase D 1e-45
1h0p_A182 Cyclophilin_5 From C. Elegans Length = 182 1e-45
3rdd_A184 Human Cyclophilin A Complexed With An Inhibitor Len 2e-45
2rma_A165 Crystal Structures Of Cyclophilin A Complexed With 3e-45
1bck_A165 Human Cyclophilin A Complexed With 2-Thr Cyclospori 3e-45
5cyh_A164 Cyclophilin A Complexed With Dipeptide Gly-Pro Leng 3e-45
1m9e_A164 X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- 3e-45
2cfe_A162 The 1.5 A Crystal Structure Of The Malassezia Sympo 4e-45
2x25_B169 Free Acetyl-Cypa Orthorhombic Form Length = 169 5e-45
2x2a_A165 Free Acetyl-Cypa Trigonal Form Length = 165 5e-45
2x2c_K165 Acetyl-Cypa:cyclosporine Complex Length = 165 5e-45
1xo7_A166 Crystal Structure Of Cyclophilin From Trypanosoma C 5e-45
3k0o_A165 Room Temperature Structure Of Cypa Mutant Ser99thr 5e-45
3k0r_A165 Cryogenic Structure Of Cypa Mutant Arg55lys Length 6e-45
2alf_A164 Crystal Structure Of Human Cypa Mutant K131a Length 1e-44
1qoi_A177 U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 2e-44
2haq_A172 Crystal Structure Of Cyclophilin A From Leishmania 2e-44
3bt8_A172 Crystal Structure Of Mutant Cyclophilin (R147a) Fro 2e-44
4dgd_A165 Trimcyp Cyclophilin Domain From Macaca Mulatta: H70 2e-44
2wlw_A165 Structure Of The N-Terminal Capsid Domain Of Hiv-2 4e-44
2r99_A173 Crystal Structure Of Cyclophilin Abh-Like Domain Of 5e-44
2x83_B163 Evolutionary Basis Of Hiv Restriction By The Antire 5e-44
1zmf_A165 C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1 5e-44
2ck1_A172 The Structure Of Oxidised Cyclophilin A From S. Man 5e-43
1aws_A164 Secypa Complexed With Hagpia (Pseudo-Symmetric Mono 6e-43
3uch_A174 Crystal Structure Of A Hypotherical Peptidyl-Prolyl 5e-42
3pmp_A164 Crystal Structure Of Cyclophilin A From Moniliophth 5e-42
3o7t_A164 Crystal Structure Of Cyclophilin A From Moniliophth 6e-42
2he9_A192 Structure Of The Peptidylprolyl Isomerase Domain Of 5e-41
3k2c_A193 Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom 6e-41
4i9y_A167 Structure Of The C-terminal Domain Of Nup358 Length 3e-39
1z81_A229 Crystal Structure Of Cyclophilin From Plasmodium Yo 4e-38
2c3b_A172 The Crystal Structure Of Aspergillus Fumigatus Cycl 1e-35
2k7n_A203 Solution Structure Of The Ppil1 Bound To A Fragment 4e-25
1xwn_A174 Solution Structure Of Cyclophilin Like 1(Ppil1) And 4e-25
2x7k_A166 The Crystal Structure Of Ppil1 In Complex With Cycl 4e-25
1xyh_A161 Crystal Structure Of Recombinant Human Cyclophilin 1e-23
2b71_A196 Plasmodium Yoelii Cyclophilin-Like Protein Length = 1e-23
2oju_A167 X-Ray Structure Of Complex Of Human Cyclophilin J W 2e-23
2a2n_A176 Crystal Structure Of The Peptidylprolyl Isomerase D 3e-23
2fu0_A160 Plasmodium Falciparum Cyclophilin Pfe0505w Putative 4e-23
2poe_A185 Crystal Structure Of Cryptosporidium Parvum Cycloph 2e-22
2hq6_A185 Structure Of The Cyclophilin_cecyp16-like Domain Of 1e-18
1zkc_A197 Crystal Structure Of The Cyclophiln_ring Domain Of 1e-18
1w74_A191 X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer 2e-16
3bo7_A201 Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro 6e-12
2ose_A234 Crystal Structure Of The Mimivirus Cyclophilin Leng 5e-10
3bkp_A232 Crystal Structure Of The Toxoplasma Gondii Cyclophi 7e-09
2nul_A164 Peptidylprolyl Isomerase From E. Coli Length = 164 4e-08
1lop_A164 Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P 4e-08
3s6m_A167 The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer 2e-07
1clh_A166 Three-Dimensional Solution Structure Of Escherichia 7e-07
1j2a_A166 Structure Of E. Coli Cyclophilin B K163t Mutant Len 7e-07
3t1u_A163 Crystal Structure Of The Complex Of Cyclophilin-a E 2e-06
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173 Back     alignment and structure 
Iteration: 1

 Score =  213 bits (543), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 126/168 (75%), Gaps = 1/168 (0%)
Query: 47  RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
           +V+ D+ I  +  GRIV+ LY  VVPKT  NFRALCTGE G G SGKPLHFKG  FHRI+
Sbjct: 5   KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64
Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTV 166
             F+IQGGD  RG+G G +SIYG  FPDENFK KH+  GV+SM N+GP++NGSQFF+ TV
Sbjct: 65  PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124
Query: 167 KASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
           K  WLDG+HVVFG+V++G+D V A+E   G+ SGKP K   IAD G++
Sbjct: 125 KTEWLDGKHVVFGRVVEGLDVVKAVESN-GSQSGKPVKDCMIADCGQL 171
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183 Back     alignment and structure
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185 Back     alignment and structure
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185 Back     alignment and structure
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186 Back     alignment and structure
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190 Back     alignment and structure
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370 Back     alignment and structure
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178 Back     alignment and structure
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188 Back     alignment and structure
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182 Back     alignment and structure
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162 Back     alignment and structure
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170 Back     alignment and structure
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166 Back     alignment and structure
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165 Back     alignment and structure
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165 Back     alignment and structure
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164 Back     alignment and structure
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170 Back     alignment and structure
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198 Back     alignment and structure
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179 Back     alignment and structure
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177 Back     alignment and structure
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173 Back     alignment and structure
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179 Back     alignment and structure
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182 Back     alignment and structure
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184 Back     alignment and structure
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165 Back     alignment and structure
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165 Back     alignment and structure
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164 Back     alignment and structure
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164 Back     alignment and structure
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162 Back     alignment and structure
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169 Back     alignment and structure
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165 Back     alignment and structure
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165 Back     alignment and structure
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166 Back     alignment and structure
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165 Back     alignment and structure
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165 Back     alignment and structure
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164 Back     alignment and structure
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177 Back     alignment and structure
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172 Back     alignment and structure
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172 Back     alignment and structure
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165 Back     alignment and structure
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165 Back     alignment and structure
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173 Back     alignment and structure
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163 Back     alignment and structure
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165 Back     alignment and structure
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172 Back     alignment and structure
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164 Back     alignment and structure
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174 Back     alignment and structure
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164 Back     alignment and structure
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164 Back     alignment and structure
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192 Back     alignment and structure
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193 Back     alignment and structure
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167 Back     alignment and structure
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229 Back     alignment and structure
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172 Back     alignment and structure
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203 Back     alignment and structure
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174 Back     alignment and structure
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166 Back     alignment and structure
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161 Back     alignment and structure
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196 Back     alignment and structure
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167 Back     alignment and structure
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176 Back     alignment and structure
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160 Back     alignment and structure
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185 Back     alignment and structure
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185 Back     alignment and structure
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197 Back     alignment and structure
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191 Back     alignment and structure
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201 Back     alignment and structure
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234 Back     alignment and structure
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232 Back     alignment and structure
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164 Back     alignment and structure
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164 Back     alignment and structure
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167 Back     alignment and structure
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166 Back     alignment and structure
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166 Back     alignment and structure
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
2igv_A173 Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1 1e-107
1mzw_A177 Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc 1e-106
2he9_A192 NK-tumor recognition protein; cyclosporin, isomera 1e-106
1a58_A177 Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala 1e-106
1ihg_A 370 Cyclophilin 40; ppiase immunophilin tetratricopept 1e-105
2poy_A186 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 1e-103
2wfi_A179 Peptidyl-prolyl CIS-trans isomerase G; phosphoprot 1e-103
1qng_A170 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 1e-103
3ich_A188 Peptidyl-prolyl CIS-trans isomerase B; beta sandwi 1e-100
2haq_A172 Cyclophilin; rotamase, proline, isomerase, CIS-tra 3e-97
3k2c_A193 Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, 2e-96
1z81_A229 Cyclophilin; structural genomics, structural genom 3e-96
2z6w_A165 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 4e-96
2cmt_A172 Peptidyl-prolyl CIS-trans isomerase E; rotamase ac 5e-96
3rdd_A184 Peptidyl-prolyl CIS-trans isomerase A; beta barrel 9e-96
2r99_A173 Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i 2e-95
3pmp_A164 Cyclophilin A; peptidyl prolyl isomerase, isomeras 9e-95
2ose_A234 Probable peptidyl-prolyl CIS-trans isomerase; cycl 6e-94
2c3b_A172 Ppiase, cyclophilin; isomerase, 3D domain swapping 8e-88
2fu0_A160 Cyclophilin, putative; PFE0505W, cyclosporin-bindi 1e-62
2k7n_A203 Peptidyl-prolyl CIS-trans isomerase-like 1; beta b 2e-62
2x7k_A166 Peptidyl-prolyl CIS-trans isomerase-like 1; isomer 2e-61
2a2n_A176 Peptidylprolyl isomerase domain and WD repeat CON; 1e-60
2b71_A196 Cyclophilin-like protein; structural genomics, str 2e-59
3bo7_A201 Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; 7e-57
2ok3_A161 Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b 1e-55
2poe_A185 Cyclophilin-like protein, putative; cryptosporidiu 4e-55
1zkc_A197 Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr 2e-54
2hq6_A185 Serologically defined colon cancer antigen 10; pro 2e-53
1w74_A191 Peptidyl-prolyl CIS-trans isomerase A; cyclophilin 5e-50
3bkp_A232 Cyclophilin; malaria, isomerase, structural GENO s 8e-46
3s6m_A167 Peptidyl-prolyl CIS-trans isomerase; seattle struc 5e-36
1lop_A164 Cyclophilin A; rotamase, isomerase-isomerase inhib 2e-35
1v9t_A166 Cyclophilin B; beta barrel, isomerase-isomerase in 8e-35
3rfy_A369 Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; 3e-32
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173 Back     alignment and structure
 Score =  303 bits (779), Expect = e-107
 Identities = 102/169 (60%), Positives = 126/169 (74%), Gaps = 1/169 (0%)

Query: 47  RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
           +V+ D+ I  +  GRIV+ LY  VVPKT  NFRALCTGE G G SGKPLHFKG  FHRI+
Sbjct: 5   KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64

Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTV 166
             F+IQGGD  RG+G G +SIYG  FPDENFK KH+  GV+SM N+GP++NGSQFF+ TV
Sbjct: 65  PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124

Query: 167 KASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP 215
           K  WLDG+HVVFG+V++G+D V A+E   G+ SGKP K   IAD G++ 
Sbjct: 125 KTEWLDGKHVVFGRVVEGLDVVKAVE-SNGSQSGKPVKDCMIADCGQLK 172
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177 Back     alignment and structure
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192 Back     alignment and structure
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177 Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 Back     alignment and structure
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186 Back     alignment and structure
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179 Back     alignment and structure
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170 Back     alignment and structure
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188 Back     alignment and structure
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172 Back     alignment and structure
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193 Back     alignment and structure
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229 Back     alignment and structure
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165 Back     alignment and structure
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172 Back     alignment and structure
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184 Back     alignment and structure
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173 Back     alignment and structure
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164 Back     alignment and structure
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234 Back     alignment and structure
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172 Back     alignment and structure
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160 Back     alignment and structure
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203 Back     alignment and structure
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166 Back     alignment and structure
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176 Back     alignment and structure
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196 Back     alignment and structure
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201 Back     alignment and structure
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161 Back     alignment and structure
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185 Back     alignment and structure
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197 Back     alignment and structure
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185 Back     alignment and structure
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191 Back     alignment and structure
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232 Back     alignment and structure
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167 Back     alignment and structure
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164 Back     alignment and structure
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166 Back     alignment and structure
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
2igv_A173 Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1 100.0
1a58_A177 Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala 100.0
3ich_A188 Peptidyl-prolyl CIS-trans isomerase B; beta sandwi 100.0
1qng_A170 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
2wfi_A179 Peptidyl-prolyl CIS-trans isomerase G; phosphoprot 100.0
2poy_A186 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
2he9_A192 NK-tumor recognition protein; cyclosporin, isomera 100.0
2cmt_A172 Peptidyl-prolyl CIS-trans isomerase E; rotamase ac 100.0
2r99_A173 Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i 100.0
4fru_A185 Cyclophilin B, peptidyl-prolyl CIS-trans isomerase 100.0
2haq_A172 Cyclophilin; rotamase, proline, isomerase, CIS-tra 100.0
2z6w_A165 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
3pmp_A164 Cyclophilin A; peptidyl prolyl isomerase, isomeras 100.0
1mzw_A177 Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc 100.0
3rdd_A184 Peptidyl-prolyl CIS-trans isomerase A; beta barrel 100.0
3k2c_A193 Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, 100.0
1z81_A229 Cyclophilin; structural genomics, structural genom 100.0
2c3b_A172 Ppiase, cyclophilin; isomerase, 3D domain swapping 100.0
2ose_A234 Probable peptidyl-prolyl CIS-trans isomerase; cycl 100.0
2poe_A185 Cyclophilin-like protein, putative; cryptosporidiu 100.0
2ok3_A161 Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b 100.0
1zkc_A197 Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr 100.0
3bo7_A201 Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; 100.0
1ihg_A 370 Cyclophilin 40; ppiase immunophilin tetratricopept 100.0
2b71_A196 Cyclophilin-like protein; structural genomics, str 100.0
2fu0_A160 Cyclophilin, putative; PFE0505W, cyclosporin-bindi 100.0
2x7k_A166 Peptidyl-prolyl CIS-trans isomerase-like 1; isomer 100.0
2hq6_A185 Serologically defined colon cancer antigen 10; pro 100.0
1w74_A191 Peptidyl-prolyl CIS-trans isomerase A; cyclophilin 100.0
2k7n_A203 Peptidyl-prolyl CIS-trans isomerase-like 1; beta b 100.0
2a2n_A176 Peptidylprolyl isomerase domain and WD repeat CON; 100.0
3bkp_A232 Cyclophilin; malaria, isomerase, structural GENO s 100.0
1v9t_A166 Cyclophilin B; beta barrel, isomerase-isomerase in 100.0
1lop_A164 Cyclophilin A; rotamase, isomerase-isomerase inhib 100.0
3s6m_A167 Peptidyl-prolyl CIS-trans isomerase; seattle struc 100.0
3rfy_A369 Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; 100.0
3kop_A188 Uncharacterized protein; protein with A cyclophili 93.95
2nnz_A153 Hypothetical protein; beta-barrel, structural geno 89.8
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Back     alignment and structure
Probab=100.00  E-value=5.5e-55  Score=349.89  Aligned_cols=170  Identities=60%  Similarity=1.091  Sum_probs=162.6

Q ss_pred             cceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCC
Q 027477           45 THRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGS  124 (223)
Q Consensus        45 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~  124 (223)
                      +++||||+++++++.|+|+||||++.||+||+||++||++.+|++..+++++|+|+.||||+|+|||||||+..++|.++
T Consensus         3 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg   82 (173)
T 2igv_A            3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGG   82 (173)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCC
Confidence            57899999999999999999999999999999999999987777777888899999999999999999999988889999


Q ss_pred             CCCCCCCCCCCCcccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCCc
Q 027477          125 DSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRK  204 (223)
Q Consensus       125 ~~~~~~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~~  204 (223)
                      .++|+..|++|++.++|+++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|+ ..++.+++|.+
T Consensus        83 ~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~-~~~t~~~~P~~  161 (173)
T 2igv_A           83 ESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVE-SNGSQSGKPVK  161 (173)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHH-TTCCTTSCCSS
T ss_pred             CccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHH-hCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999 77778899999


Q ss_pred             ceEEeeeeeec
Q 027477          205 KVTIADSGEIP  215 (223)
Q Consensus       205 ~i~I~~cg~l~  215 (223)
                      +|+|.+||+|+
T Consensus       162 ~v~I~~~g~l~  172 (173)
T 2igv_A          162 DCMIADCGQLK  172 (173)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CEEEEEeEEEc
Confidence            99999999986
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Back     alignment and structure
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Back     alignment and structure
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Back     alignment and structure
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Back     alignment and structure
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Back     alignment and structure
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Back     alignment and structure
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Back     alignment and structure
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Back     alignment and structure
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Back     alignment and structure
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Back     alignment and structure
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Back     alignment and structure
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A Back     alignment and structure
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Back     alignment and structure
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Back     alignment and structure
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Back     alignment and structure
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Back     alignment and structure
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Back     alignment and structure
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Back     alignment and structure
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Back     alignment and structure
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Back     alignment and structure
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Back     alignment and structure
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Back     alignment and structure
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Back     alignment and structure
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Back     alignment and structure
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Back     alignment and structure
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Back     alignment and structure
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Back     alignment and structure
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Back     alignment and structure
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Back     alignment and structure
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Back     alignment and structure
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Back     alignment and structure
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A* Back     alignment and structure
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Back     alignment and structure
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP} Back     alignment and structure
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 223
d2igva1172 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno 5e-55
d1a33a_174 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode ( 8e-54
d2cfea1162 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 3e-53
d1qnga_170 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium 4e-53
d1ihga2195 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain 2e-51
d2z6wa1164 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c 1e-47
d2rmca_182 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus 9e-47
d1qoia_173 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom 9e-47
d1h0pa_182 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd 3e-46
d1xo7a_166 b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom 5e-45
d1z81a1186 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas 3e-44
d2r99a1161 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl 5e-43
d2c3ba1171 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper 2e-42
d1zkca1178 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso 5e-41
d1xwna1166 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome 2e-40
d1w74a_171 b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 5e-36
d2ok3a1159 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B 2e-35
d2b71a1169 b.62.1.1 (A:23-191) Cyclophilin-like protein PY006 1e-29
d2fu0a1155 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w { 4e-29
d2a2na1164 b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma 5e-29
d1lopa_164 b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 6e-28
d1v9ta_166 b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 8e-25
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172 Back     information, alignment and structure

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  171 bits (434), Expect = 5e-55
 Identities = 102/168 (60%), Positives = 126/168 (75%), Gaps = 1/168 (0%)

Query: 47  RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
           +V+ D+ I  +  GRIV+ LY  VVPKT  NFRALCTGE G G SGKPLHFKG  FHRI+
Sbjct: 5   KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64

Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTV 166
             F+IQGGD  RG+G G +SIYG  FPDENFK KH+  GV+SM N+GP++NGSQFF+ TV
Sbjct: 65  PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124

Query: 167 KASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
           K  WLDG+HVVFG+V++G+D V A+E   G+ SGKP K   IAD G++
Sbjct: 125 KTEWLDGKHVVFGRVVEGLDVVKAVE-SNGSQSGKPVKDCMIADCGQL 171
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174 Back     information, alignment and structure
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162 Back     information, alignment and structure
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170 Back     information, alignment and structure
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195 Back     information, alignment and structure
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Back     information, alignment and structure
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182 Back     information, alignment and structure
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173 Back     information, alignment and structure
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182 Back     information, alignment and structure
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166 Back     information, alignment and structure
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186 Back     information, alignment and structure
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161 Back     information, alignment and structure
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171 Back     information, alignment and structure
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178 Back     information, alignment and structure
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 Back     information, alignment and structure
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171 Back     information, alignment and structure
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159 Back     information, alignment and structure
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169 Back     information, alignment and structure
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155 Back     information, alignment and structure
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Back     information, alignment and structure
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164 Back     information, alignment and structure
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
d2igva1172 Cyclophilin (eukaryotic) {Caenorhabditis elegans, 100.0
d1h0pa_182 Cyclophilin (eukaryotic) {Caenorhabditis elegans, 100.0
d1qnga_170 Cyclophilin (eukaryotic) {Plasmodium falciparum [T 100.0
d2rmca_182 Cyclophilin (eukaryotic) {Mouse (Mus musculus), va 100.0
d2r99a1161 Mitochondrial peptidyl-prolyl cis-trans isomerase, 100.0
d1ihga2195 Cyclophilin 40 isomerase domain {Cow (Bos taurus) 100.0
d1xo7a_166 Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId 100.0
d2z6wa1164 Mitochondrial peptidyl-prolyl cis-trans isomerase, 100.0
d2cfea1162 Cyclophilin-like allergen Mal s 6 {Malassezia symp 100.0
d1a33a_174 Cyclophilin (eukaryotic) {Nematode (Brugia malayi) 100.0
d1qoia_173 Cyclophilin (eukaryotic) {Human (Homo sapiens), U4 100.0
d1z81a1186 Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId 100.0
d2ok3a1159 Cyclophilin-like protein PPIL3B {Human (Homo sapie 100.0
d2c3ba1171 Cyclophilin (eukaryotic) {Aspergillus fumigatus [T 100.0
d1zkca1178 Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop 100.0
d2fu0a1155 Putative cyclophilin PFE0505w {Plasmodium falcipar 100.0
d1xwna1166 Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 100.0
d2b71a1169 Cyclophilin-like protein PY00693 {Plasmodium yoeli 100.0
d1v9ta_166 Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche 100.0
d2a2na1164 Peptidylprolyl isomerase domain and WD repeat-cont 100.0
d1w74a_171 Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob 100.0
d1lopa_164 Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche 100.0
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Back     information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=1.4e-49  Score=316.84  Aligned_cols=170  Identities=60%  Similarity=1.091  Sum_probs=161.4

Q ss_pred             cceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCC
Q 027477           45 THRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGS  124 (223)
Q Consensus        45 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~  124 (223)
                      ++|||||++++++++|+|+||||.+.||+||+||++||++..++..+++..+|+++.||||++++++|+|+...+++.++
T Consensus         3 ~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~~~~   82 (172)
T d2igva1           3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGG   82 (172)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCccCCCCCCC
Confidence            57899999999999999999999999999999999999988777777788899999999999999999999988888888


Q ss_pred             CCCCCCCCCCCCcccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCCc
Q 027477          125 DSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRK  204 (223)
Q Consensus       125 ~~~~~~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~~  204 (223)
                      ...++..+++|.....|+.+|+|||++++|++++|||||++.++|+||++|+|||+|++|||||++|+ ..++++++|++
T Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~-~~~~~~g~P~~  161 (172)
T d2igva1          83 ESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVE-SNGSQSGKPVK  161 (172)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHH-TTCCTTSCCSS
T ss_pred             cccCCCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHH-cCCCCCCCCCC
Confidence            88888999999999999999999999999999999999999999999999999999999999999998 77889999999


Q ss_pred             ceEEeeeeeec
Q 027477          205 KVTIADSGEIP  215 (223)
Q Consensus       205 ~i~I~~cg~l~  215 (223)
                      +|+|.+||+|+
T Consensus       162 ~i~I~~cG~l~  172 (172)
T d2igva1         162 DCMIADCGQLK  172 (172)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CeEEEeccccC
Confidence            99999999985
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Back     information, alignment and structure
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Back     information, alignment and structure
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Back     information, alignment and structure
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Back     information, alignment and structure
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Back     information, alignment and structure
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Back     information, alignment and structure
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure