Citrus Sinensis ID: 027481

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MKSAFRNAVALRTLPHYHFINPHFHSLPRFSVAAVSSPPSSLVSPSKPETFRFRRRSSPLRVRYSSMTGGETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGEHSDECHIY
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccccHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccccccccccccccccHHHccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccHHHHHccccccccccc
Coil and Loop (DISEMBL)
MKSAFRNavalrtlphyhfinphfhslprfsvaavssppsslvspskpetfrfrrrssplrvryssmtggetdapasmeKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLhvhqsrplsevlekpkaQVDGLKELYGRLAEVLCecpgeyyrfhndwrsETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYligehsdechiy
Flexible Loop (DISEMBL)
MKSAFRNAVALRTLPHYHFINPHFHSLPRFSVAAVSSPPsslvspskpetfrfrrrssplrvryssmtggetdapasmekQFEDFRVKLdeagslrerIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGEHSDECHIY
Low Complexity Region (SEG)
MKSAFRNAVALRTLPHYHFINPHFHSLPRFsvaavssppsslvspsKPETFrfrrrssplrvryssMTGGETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGEHSDECHIY
Disordered region (IsUnstruct)
******NAVALRTLPHYHFINPHFHSLPRFSV************************************************************GSLRERIRAVVNEIESITRLMHASLLHVHQSR*L**VL***KAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGE********
Disordered Region (DISOPRED)
********VALRTLPHYHFINPHFHS*******************************************************FEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRP*SEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGEHSDECHIY
Disordered Region (DISEMBL)
MKSAFRNAVALRTLPHYHFINPHFHSLPRFSV********************FRRRSSPLRVRYSSMTGGETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGEHSDECHIY
Disordered Region (DISPRO)
*KSAFRNAVALRTLPHYHFINPHFHSLPRFSVAAVSSPPSSLVSPSKPETFRFRRRSSPLRVRYSSMTGGE*DAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGEHSDEC**Y
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSAFRNAVALRTLPHYHFINPHFHSLPRFSVAAVSSPPSSLVSPSKPETFRFRRRSSPLRVRYSSMTGGETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGEHSDECHIY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q5R7P2	228	Translin OS=Pongo abelii	yes	no	0.538	0.526	0.346	2e-09
Q62348	228	Translin OS=Mus musculus	yes	no	0.538	0.526	0.338	3e-09
P97891	228	Translin OS=Cricetulus gr	yes	no	0.538	0.526	0.338	4e-09
Q15631	228	Translin OS=Homo sapiens	yes	no	0.538	0.526	0.338	5e-09
Q08DM8	228	Translin OS=Bos taurus GN	yes	no	0.538	0.526	0.330	1e-08
P79769	229	Translin OS=Gallus gallus	yes	no	0.542	0.528	0.328	2e-08

>sp|Q5R7P2|TSN_PONAB Translin OS=Pongo abelii GN=TSN PE=2 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 95  LRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCEC 154
           +RE IR VV  +E   R +   L  VHQ     ++ ++     +    +   L  +  + 
Sbjct: 20  IREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKF 79

Query: 155 PGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMN---QAEFALDIED 210
           P E YYRFH  WR   Q +V L AF+ +LET  L+      E LGM    +  F LD+ED
Sbjct: 80  PAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGMEPDREKGFHLDVED 139

Query: 211 YLIG 214
           YL G
Sbjct: 140 YLSG 143

Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.
Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q62348|TSN_MOUSE Translin OS=Mus musculus GN=Tsn PE=1 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 95  LRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCEC 154
           +RE IR VV  +E   R +   L  VHQ     ++ ++     +    +   L  +  + 
Sbjct: 20  IREEIRKVVQSLEQTAREILTLLQGVHQGTGFQDIPKRCLKAREHFSTVKTHLTSLKTKF 79

Query: 155 PGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMN---QAEFALDIED 210
           P E YYRFH  WR   Q +V L AF+ +LET  L+      E LG+    +  F LD+ED
Sbjct: 80  PAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVED 139

Query: 211 YLIG 214
           YL G
Sbjct: 140 YLSG 143

Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P97891|TSN_CRIGR Translin OS=Cricetulus griseus GN=TSN PE=2 SV=1

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 95  LRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCEC 154
           +RE IR VV  +E   R +   L  VHQ     ++ ++     +    +   L  +  + 
Sbjct: 20  IREEIRKVVQSLEQTAREILTLLQGVHQGTGFQDIPKRCLKAREHFGTVKTHLTSLKTKF 79

Query: 155 PGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMN---QAEFALDIED 210
           P E YYRFH  WR   Q +V L AF+ +LET  L+      E LG+    +  F LD+ED
Sbjct: 80  PAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVED 139

Query: 211 YLIG 214
           YL G
Sbjct: 140 YLSG 143

Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.

Cricetulus griseus (taxid: 10029)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q15631|TSN_HUMAN Translin OS=Homo sapiens GN=TSN PE=1 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 95  LRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCEC 154
           +RE IR VV  +E   R +   L  VHQ     ++ ++     +    +   L  +  + 
Sbjct: 20  IREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKF 79

Query: 155 PGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMN---QAEFALDIED 210
           P E YYRFH  WR   Q +V L AF+ +LET  L+      E LG+    +  F LD+ED
Sbjct: 80  PAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVED 139

Query: 211 YLIG 214
           YL G
Sbjct: 140 YLSG 143

Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q08DM8|TSN_BOVIN Translin OS=Bos taurus GN=TSN PE=2 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 95  LRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCEC 154
           +RE IR VV  +E   R +   L  VHQ     ++ ++     +    +   L  +  + 
Sbjct: 20  IREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKF 79

Query: 155 PGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMN---QAEFALDIED 210
           P E YYRFH  WR   Q +V L AF+ +LE+  L+      E LG+    +  F LD+ED
Sbjct: 80  PAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVTEILGIEPDREKGFHLDVED 139

Query: 211 YLIG 214
           YL G
Sbjct: 140 YLSG 143

Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P79769|TSN_CHICK Translin OS=Gallus gallus GN=TSN PE=1 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 4/125 (3%)

Query: 94  SLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCE 153
            +RE IR VV  +E   R M      VHQ     ++ +K +   +    +  ++  +  +
Sbjct: 19  DIREEIRKVVQALEQTAREMLTLPQGVHQGAGFQDIPKKCQKAREHFGTVRTQMESLKTK 78

Query: 154 CPG-EYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMN---QAEFALDIE 209
            P  +YYRFH  WR   Q +V L +F+ +LET  L+      E LG+    +  F LDIE
Sbjct: 79  FPADQYYRFHEHWRFVLQRLVFLASFVVYLETETLVTREAVAEILGIEADRERGFHLDIE 138

Query: 210 DYLIG 214
           DYL G
Sbjct: 139 DYLSG 143

Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
224069515	239	predicted protein [Populus trichocarpa]	0.663	0.619	0.689	4e-54
359481387	312	PREDICTED: translin [Vitis vinifera]	0.905	0.647	0.541	4e-54
334184743	310	translin-like protein [Arabidopsis thali	0.878	0.632	0.525	6e-54
186506028	308	translin-like protein [Arabidopsis thali	0.878	0.636	0.525	6e-54
297823523	234	predicted protein [Arabidopsis lyrata su	0.663	0.632	0.662	1e-52
14596009	238	translin-like protein [Arabidopsis thali	0.663	0.621	0.675	1e-52
356572456	295	PREDICTED: translin-like [Glycine max]	0.744	0.562	0.618	1e-52
449532737	228	PREDICTED: translin-like, partial [Cucum	0.914	0.894	0.514	5e-52
297741623	252	unnamed protein product [Vitis vinifera]	0.645	0.571	0.673	3e-51
255556962	299	translin, putative [Ricinus communis] gi	0.914	0.682	0.525	3e-51

>gi|224069515|ref|XP_002326362.1| predicted protein [Populus trichocarpa] gi|222833555|gb|EEE72032.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 102/148 (68%), Positives = 120/148 (81%)

Query: 67  MTGGETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPL 126
           M+GG      S++KQFE+ R KL+E+G LRE+IRAVV EIES TRL+H+ LL VHQSRP+
Sbjct: 1   MSGGADSPSPSLDKQFEELRSKLEESGRLREKIRAVVLEIESTTRLLHSGLLLVHQSRPV 60

Query: 127 SEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGK 186
            EVLEK KA++  LK LY RLAE++ ECPG+YYR+H DWRSETQ VVSLL  MHWLETG 
Sbjct: 61  PEVLEKAKARIGVLKGLYNRLAEIILECPGQYYRYHGDWRSETQIVVSLLTLMHWLETGN 120

Query: 187 LLMHTEAEEKLGMNQAEFALDIEDYLIG 214
           LLMHTEA+EKLG+N  EF LDIEDYLIG
Sbjct: 121 LLMHTEAQEKLGLNSLEFGLDIEDYLIG 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481387|ref|XP_002281908.2| PREDICTED: translin [Vitis vinifera]

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 118/218 (54%), Positives = 149/218 (68%), Gaps = 16/218 (7%)

Query: 1   MKSAFRNAVALRTLPHYHFINPHFHS---LPRF-SVAAVSSPPSSLVSPSKPETFRFRRR 56
           MK+ FRN  +  +      +NP+ HS   LP   + +++  PPS    P +   FR    
Sbjct: 1   MKAVFRNVFSAVS----RSLNPNPHSSIFLPTLRTFSSIILPPSPF--PFRNNAFRLLSA 54

Query: 57  SSPLRVRYSSMTGGETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHAS 116
           +S      SSM   E    +S+EKQFE FR +L+E+G LRER+RA+  EIES TRLMHA+
Sbjct: 55  TS----HSSSM--AEDGTSSSVEKQFESFRCQLEESGGLRERVRAIAMEIESATRLMHAN 108

Query: 117 LLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLL 176
           LL VHQSR + EVLEK  +Q+  LK+LY +L  VL ECPG+YYR+H +WRSETQT VSLL
Sbjct: 109 LLLVHQSRSVPEVLEKASSQIAVLKKLYNQLGVVLQECPGQYYRYHGEWRSETQTAVSLL 168

Query: 177 AFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIG 214
            FMHWLETG LLMHTEAE+KLG+N ++F LDIEDYLIG
Sbjct: 169 TFMHWLETGNLLMHTEAEQKLGLNASDFGLDIEDYLIG 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184743|ref|NP_001189694.1| translin-like protein [Arabidopsis thaliana] gi|330254242|gb|AEC09336.1| translin-like protein [Arabidopsis thaliana]

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 147/236 (62%), Gaps = 40/236 (16%)

Query: 1   MKSAFRNA--VALRTLPHYHFINPHFHSLPRFSVAAVSSPPSSLVSPSKPETFRFRRRSS 58
           M SAFRN    A R +    F +   H LP  S  A         SP         RRS+
Sbjct: 2   MNSAFRNVHITASRLINPKPFSSSILHFLPLCSGDA---------SP---------RRSN 43

Query: 59  PLRVR--------------------YSSMTGGETDAPASMEKQFEDFRVKLDEAGSLRER 98
           PLR R                    Y  M GG+     S+EKQFE FRV+L+E+ +LRE+
Sbjct: 44  PLRHRNSVSPSSSFPFCSTSSFSSFYIPMAGGDGQVSHSLEKQFESFRVQLEESAALREQ 103

Query: 99  IRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEY 158
           IRAVV EIES TRL+ A+LL VHQSRP+ EV+EK K ++  LK+ YGRLAE+L ECPG+Y
Sbjct: 104 IRAVVMEIESATRLIQANLLLVHQSRPIPEVIEKAKEKIVDLKQYYGRLAEILEECPGQY 163

Query: 159 YRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIG 214
           YR+H DWRSETQ VVS LAFMHWLETG LL+HTEAEEKLG+N  EF L+ EDYL G
Sbjct: 164 YRYHGDWRSETQAVVSQLAFMHWLETGTLLVHTEAEEKLGLNSLEFGLETEDYLTG 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186506028|ref|NP_565857.2| translin-like protein [Arabidopsis thaliana] gi|330254241|gb|AEC09335.1| translin-like protein [Arabidopsis thaliana]

 Score =  216 bits (549), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 147/236 (62%), Gaps = 40/236 (16%)

Query: 1   MKSAFRNA--VALRTLPHYHFINPHFHSLPRFSVAAVSSPPSSLVSPSKPETFRFRRRSS 58
           M SAFRN    A R +    F +   H LP  S  A         SP         RRS+
Sbjct: 1   MNSAFRNVHITASRLINPKPFSSSILHFLPLCSGDA---------SP---------RRSN 42

Query: 59  PLRVR--------------------YSSMTGGETDAPASMEKQFEDFRVKLDEAGSLRER 98
           PLR R                    Y  M GG+     S+EKQFE FRV+L+E+ +LRE+
Sbjct: 43  PLRHRNSVSPSSSFPFCSTSSFSSFYIPMAGGDGQVSHSLEKQFESFRVQLEESAALREQ 102

Query: 99  IRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEY 158
           IRAVV EIES TRL+ A+LL VHQSRP+ EV+EK K ++  LK+ YGRLAE+L ECPG+Y
Sbjct: 103 IRAVVMEIESATRLIQANLLLVHQSRPIPEVIEKAKEKIVDLKQYYGRLAEILEECPGQY 162

Query: 159 YRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIG 214
           YR+H DWRSETQ VVS LAFMHWLETG LL+HTEAEEKLG+N  EF L+ EDYL G
Sbjct: 163 YRYHGDWRSETQAVVSQLAFMHWLETGTLLVHTEAEEKLGLNSLEFGLETEDYLTG 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823523|ref|XP_002879644.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325483|gb|EFH55903.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 121/148 (81%)

Query: 67  MTGGETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPL 126
           M GG+     S+EKQFE+FRV+L+E+ +LRE+IRAVV EIES TRL+ A+L+ VHQSRP+
Sbjct: 1   MAGGDGQVSLSLEKQFENFRVQLEESAALREQIRAVVMEIESATRLIQANLVLVHQSRPI 60

Query: 127 SEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGK 186
            EV+EK K ++  LK+ YGRLAE+L +CPG+YYR+H DWRSETQ VVS LAFMHWLETG 
Sbjct: 61  PEVIEKAKEKIVDLKKFYGRLAEILQKCPGQYYRYHGDWRSETQAVVSQLAFMHWLETGT 120

Query: 187 LLMHTEAEEKLGMNQAEFALDIEDYLIG 214
           LL+HTEAEEKLG+N  EF L+ EDYL G
Sbjct: 121 LLVHTEAEEKLGLNSLEFGLETEDYLTG 148

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14596009|gb|AAK68732.1| translin-like protein [Arabidopsis thaliana] gi|17978801|gb|AAL47394.1| translin-like protein [Arabidopsis thaliana] gi|20197945|gb|AAD31587.2| translin-like protein [Arabidopsis thaliana]

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 100/148 (67%), Positives = 120/148 (81%)

Query: 67  MTGGETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPL 126
           M GG+     S+EKQFE FRV+L+E+ +LRE+IRAVV EIES TRL+ A+LL VHQSRP+
Sbjct: 1   MAGGDGQVSHSLEKQFESFRVQLEESAALREQIRAVVMEIESATRLIQANLLLVHQSRPI 60

Query: 127 SEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGK 186
            EV+EK K ++  LK+ YGRLAE+L ECPG+YYR+H DWRSETQ VVS LAFMHWLETG 
Sbjct: 61  PEVIEKAKEKIVDLKQYYGRLAEILEECPGQYYRYHGDWRSETQAVVSQLAFMHWLETGT 120

Query: 187 LLMHTEAEEKLGMNQAEFALDIEDYLIG 214
           LL+HTEAEEKLG+N  EF L+ EDYL G
Sbjct: 121 LLVHTEAEEKLGLNSLEFGLETEDYLTG 148

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572456|ref|XP_003554384.1| PREDICTED: translin-like [Glycine max]

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/173 (61%), Positives = 135/173 (78%), Gaps = 7/173 (4%)

Query: 43  VSP-SKPETFRFRRRSSPLRVRYSSMTGGETDAPASMEKQFEDFRVKLDEAGSLRERIRA 101
           VSP  KPETFR     S L     ++       P+S+EKQF+DFRV+L+E+G+LRERIR+
Sbjct: 32  VSPFRKPETFRLASPVSCLSSSSMAV------PPSSLEKQFDDFRVQLEESGTLRERIRS 85

Query: 102 VVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRF 161
           VV+EIES TRL++A+LL VHQSRP  E+LEK K+ V+ LK+ Y +LAEV+  CPG+YYR+
Sbjct: 86  VVSEIESSTRLIYATLLLVHQSRPTPELLEKAKSHVNVLKKQYKQLAEVVGGCPGQYYRY 145

Query: 162 HNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIG 214
           H DW+SETQ+VVS+L FMHWLETG LL H EAEEKLG+N +EF LD+EDYLIG
Sbjct: 146 HGDWKSETQSVVSMLTFMHWLETGSLLEHKEAEEKLGLNSSEFGLDVEDYLIG 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532737|ref|XP_004173337.1| PREDICTED: translin-like, partial [Cucumis sativus]

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 125/243 (51%), Positives = 154/243 (63%), Gaps = 39/243 (16%)

Query: 1   MKSAFRNAVALRTLPHYHFINPH-----------FHSLPRFSVAAVSSPPSSLVSPSKPE 49
           M SA R+A  + +    H +NP+            HSLP  SV+ +              
Sbjct: 1   MNSALRSAYFIFS----HSLNPNPNPKAFPLIFCLHSLPFISVSRL-------------- 42

Query: 50  TFRFRRRSSPLR-VRYS----SMTGGETDA-----PASMEKQFEDFRVKLDEAGSLRERI 99
             R  R+  P R VR S    S T   TDA      +S+EKQFE FR +L ++GSLR+RI
Sbjct: 43  PLRVSRQEQPSRSVRTSTFCSSSTMAGTDANSLASSSSVEKQFEHFRTQLQDSGSLRDRI 102

Query: 100 RAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEYY 159
           R+V  EIES TRL+ ASLL VHQSR   EVLEKPK+QV  LK  Y +LAE+L E PG YY
Sbjct: 103 RSVAMEIESSTRLIQASLLLVHQSRLTPEVLEKPKSQVGLLKSFYNQLAEILRESPGLYY 162

Query: 160 RFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGEHSDE 219
           R+H DWRSETQT VSLLAF+HWLETG+LL+H EAEEKLG+N+++F LD+EDYLIGE S  
Sbjct: 163 RYHGDWRSETQTAVSLLAFIHWLETGELLLHPEAEEKLGLNESDFNLDVEDYLIGELSIV 222

Query: 220 CHI 222
            +I
Sbjct: 223 SYI 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741623|emb|CBI32755.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 97/144 (67%), Positives = 117/144 (81%)

Query: 71  ETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVL 130
           E    +S+EKQFE FR +L+E+G LRER+RA+  EIES TRLMHA+LL VHQSR + EVL
Sbjct: 3   EDGTSSSVEKQFESFRCQLEESGGLRERVRAIAMEIESATRLMHANLLLVHQSRSVPEVL 62

Query: 131 EKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMH 190
           EK  +Q+  LK+LY +L  VL ECPG+YYR+H +WRSETQT VSLL FMHWLETG LLMH
Sbjct: 63  EKASSQIAVLKKLYNQLGVVLQECPGQYYRYHGEWRSETQTAVSLLTFMHWLETGNLLMH 122

Query: 191 TEAEEKLGMNQAEFALDIEDYLIG 214
           TEAE+KLG+N ++F LDIEDYLIG
Sbjct: 123 TEAEQKLGLNASDFGLDIEDYLIG 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556962|ref|XP_002519514.1| translin, putative [Ricinus communis] gi|223541377|gb|EEF42928.1| translin, putative [Ricinus communis]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 115/219 (52%), Positives = 158/219 (72%), Gaps = 15/219 (6%)

Query: 1   MKSAFRNAVALRTLPHYHFINPHFHSLPRFSVAAVSSPPSSLVSPSKPETFRFRRRSSPL 60
           MKSAFRNA  L     Y  +NP+       +  ++++ PSS    S  +   FR   S  
Sbjct: 1   MKSAFRNAYILSL---YRSLNPNI-----LASISLTTLPSSARPLSALQNAPFRSLCST- 51

Query: 61  RVRYSSMTGGET-----DAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHA 115
            + +SS+T   T      +P ++E QF++FR  L+E+GS+RE+IR+VV+EIES +R +H 
Sbjct: 52  -ICFSSLTMAATGDRNSSSPPTLENQFKEFRTHLEESGSVREKIRSVVSEIESSSRCIHV 110

Query: 116 SLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSL 175
           SLL VHQSRP+SE+LE+ KAQ++ LK+LY +LA+++ + PG++YR+H DW+SETQTVVSL
Sbjct: 111 SLLLVHQSRPVSEILEEAKAQIEVLKKLYSQLADIIKDRPGQFYRYHGDWKSETQTVVSL 170

Query: 176 LAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIG 214
           LAFMHWLETG LL+H+EAEEKLG+N +EF LDIEDYLIG
Sbjct: 171 LAFMHWLETGNLLLHSEAEEKLGLNSSEFGLDIEDYLIG 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
FB|FBgn0033528	235	trsn "translin" [Drosophila me	0.587	0.557	0.328	2.3e-14
MGI|MGI:109263	228	Tsn "translin" [Mus musculus (	0.618	0.605	0.316	8.2e-12
DICTYBASE|DDB_G0270384	214	tsn "translin" [Dictyostelium	0.565	0.588	0.342	1e-11
UNIPROTKB|F1NCV4	160	TSN "Translin" [Gallus gallus	0.618	0.862	0.316	1e-11
UNIPROTKB|F1NT44	229	TSN "Translin" [Gallus gallus	0.618	0.602	0.316	1e-11
UNIPROTKB|Q15631	228	TSN "Translin" [Homo sapiens (	0.618	0.605	0.316	1.3e-11
UNIPROTKB|Q71SY3	228	Tsn "Protein Tsn" [Rattus norv	0.618	0.605	0.316	1.3e-11
UNIPROTKB|Q08DM8	228	TSN "Translin" [Bos taurus (ta	0.618	0.605	0.309	3.5e-11
UNIPROTKB|F1PFI5	242	TSN "Uncharacterized protein"	0.618	0.570	0.309	3.5e-11
UNIPROTKB|F1RXY7	172	TSN "Uncharacterized protein"	0.618	0.802	0.309	3.5e-11

FB|FBgn0033528 trsn "translin" [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 45/137 (32%), Positives = 76/137 (55%)

Query:    82 FEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS-RPLSEVLEKPKAQVDGL 140
             F +++  +D    +RE IR VV EIE +++     L  +H     +S      + QV+  
Sbjct:    10 FSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELC 69

Query:   141 KELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM- 199
              + Y +LAE++    G+YYR+ + W   TQ ++ ++A + +LE G L+      E LG+ 
Sbjct:    70 AQKYQKLAELVPA--GQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLGLK 127

Query:   200 -NQAE-FALDIEDYLIG 214
              +Q+E F LD+EDYL+G
Sbjct:   128 ISQSEGFHLDVEDYLLG 144

GO:0005634 "nucleus" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0050821 "protein stabilization" evidence=IMP

GO:0007630 "jump response" evidence=IMP

GO:0004521 "endoribonuclease activity" evidence=IDA

GO:0016246 "RNA interference" evidence=IMP

MGI|MGI:109263 Tsn "translin" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 45/142 (31%), Positives = 67/142 (47%)

Query:    77 SMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQ 136
             S+ + F + +  L     +RE IR VV  +E   R +   L  VHQ     ++ ++    
Sbjct:     2 SVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGTGFQDIPKRCLKA 61

Query:   137 VDGLKELYGRLAEVLCECPGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEE 195
              +    +   L  +  + P E YYRFH  WR   Q +V L AF+ +LET  L+      E
Sbjct:    62 REHFSTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE 121

Query:   196 KLGMN---QAEFALDIEDYLIG 214
              LG+    +  F LD+EDYL G
Sbjct:   122 ILGIEPDREKGFHLDVEDYLSG 143

GO:0003677 "DNA binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=ISO

GO:0003723 "RNA binding" evidence=IDA

GO:0003729 "mRNA binding" evidence=IDA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0090305 "nucleic acid phosphodiester bond hydrolysis" evidence=IEA

DICTYBASE|DDB_G0270384 tsn "translin" [Dictyostelium discoideum (taxid:44689)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 50/146 (34%), Positives = 82/146 (56%)

Query:    78 MEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQ-SRPLS--EVLEK-- 132
             ME  FE F  +L++   LR+ I+ ++ +IE I R +   +   HQ +  +S  ++LE+  
Sbjct:     1 MENLFESFTEELEQDFQLRQNIKEIMTKIEPIDRKLSQMVQTYHQVNNTMSYQQLLEEIQ 60

Query:   133 P-KAQVDGLKELYGRLAEVLCECPGEYYRFHNDWR-SETQTVVSLLAFMHWLETGKLLMH 190
             P KAQ+D LK L   +  VL      YY++ + W+ S TQ   SL+ F +W+E   LL  
Sbjct:    61 PMKAQIDQLKLL---IKPVL------YYKYRDYWKFSITQISFSLI-FSYWVEKKSLLKI 110

Query:   191 TEAEEKLGMNQ---AEFALDIEDYLI 213
              + +  LG+++     F+L++EDYLI
Sbjct:   111 DQVQSILGLDENKPGSFSLELEDYLI 136

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1NCV4 TSN "Translin" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 45/142 (31%), Positives = 67/142 (47%)

Query:    77 SMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQ 136
             S+   F   +  L     +RE IR VV  +E   R M   L  VHQ     ++ +K +  
Sbjct:     6 SVSAMFVALQGALTADQDIREEIRKVVQALEQTAREMLTLLQGVHQGAGFQDIPKKCQKA 65

Query:   137 VDGLKELYGRLAEVLCECPGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEE 195
              +    +  ++  +  + P + YYRFH  WR   Q +V L +F+ +LET  L+      E
Sbjct:    66 REHFGTVRTQMESLKTKFPADQYYRFHEHWRFVLQRLVFLASFVVYLETETLVTREAVAE 125

Query:   196 KLGMN---QAEFALDIEDYLIG 214
              LG+    +  F LDIEDYL G
Sbjct:   126 ILGIEADRERGFHLDIEDYLSG 147

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|F1NT44 TSN "Translin" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 45/142 (31%), Positives = 67/142 (47%)

Query:    77 SMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQ 136
             S+   F   +  L     +RE IR VV  +E   R M   L  VHQ     ++ +K +  
Sbjct:     2 SVSAMFVALQGALTADQDIREEIRKVVQALEQTAREMLTLLQGVHQGAGFQDIPKKCQKA 61

Query:   137 VDGLKELYGRLAEVLCECPGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEE 195
              +    +  ++  +  + P + YYRFH  WR   Q +V L +F+ +LET  L+      E
Sbjct:    62 REHFGTVRTQMESLKTKFPADQYYRFHEHWRFVLQRLVFLASFVVYLETETLVTREAVAE 121

Query:   196 KLGMN---QAEFALDIEDYLIG 214
              LG+    +  F LDIEDYL G
Sbjct:   122 ILGIEADRERGFHLDIEDYLSG 143

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q15631 TSN "Translin" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 45/142 (31%), Positives = 67/142 (47%)

Query:    77 SMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQ 136
             S+ + F + +  L     +RE IR VV  +E   R +   L  VHQ     ++ ++    
Sbjct:     2 SVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKA 61

Query:   137 VDGLKELYGRLAEVLCECPGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEE 195
              +    +   L  +  + P E YYRFH  WR   Q +V L AF+ +LET  L+      E
Sbjct:    62 REHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE 121

Query:   196 KLGMN---QAEFALDIEDYLIG 214
              LG+    +  F LD+EDYL G
Sbjct:   122 ILGIEPDREKGFHLDVEDYLSG 143

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0006310 "DNA recombination" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q71SY3 Tsn "Protein Tsn" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 45/142 (31%), Positives = 67/142 (47%)

Query:    77 SMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQ 136
             S+ + F + +  L     +RE IR VV  +E   R +   L  VHQ     ++ ++    
Sbjct:     2 SVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGTGFQDIPKRCLKA 61

Query:   137 VDGLKELYGRLAEVLCECPGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEE 195
              +    +   L  +  + P E YYRFH  WR   Q +V L AF+ +LET  L+      E
Sbjct:    62 REHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE 121

Query:   196 KLGMN---QAEFALDIEDYLIG 214
              LG+    +  F LD+EDYL G
Sbjct:   122 ILGIEPDREKGFHLDVEDYLSG 143

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q08DM8 TSN "Translin" [Bos taurus (taxid:9913)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 44/142 (30%), Positives = 67/142 (47%)

Query:    77 SMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQ 136
             S+ + F + +  L     +RE IR VV  +E   R +   L  VHQ     ++ ++    
Sbjct:     2 SVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKA 61

Query:   137 VDGLKELYGRLAEVLCECPGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEE 195
              +    +   L  +  + P E YYRFH  WR   Q +V L AF+ +LE+  L+      E
Sbjct:    62 REHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVTE 121

Query:   196 KLGMN---QAEFALDIEDYLIG 214
              LG+    +  F LD+EDYL G
Sbjct:   122 ILGIEPDREKGFHLDVEDYLSG 143

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|F1PFI5 TSN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 44/142 (30%), Positives = 67/142 (47%)

Query:    77 SMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQ 136
             S+ + F + +  L     +RE IR VV  +E   R +   L  VHQ     ++ ++    
Sbjct:    17 SVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKA 76

Query:   137 VDGLKELYGRLAEVLCECPGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEE 195
              +    +   L  +  + P E YYRFH  WR   Q +V L AF+ +LE+  L+      E
Sbjct:    77 REHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVTE 136

Query:   196 KLGMN---QAEFALDIEDYLIG 214
              LG+    +  F LD+EDYL G
Sbjct:   137 ILGIEPDREKGFHLDVEDYLSG 158

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|F1RXY7 TSN "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 44/142 (30%), Positives = 67/142 (47%)

Query:    77 SMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQ 136
             S+ + F + +  L     +RE IR VV  +E   R +   L  VHQ     ++ ++    
Sbjct:     2 SVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKA 61

Query:   137 VDGLKELYGRLAEVLCECPGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEE 195
              +    +   L  +  + P E YYRFH  WR   Q +V L AF+ +LE+  L+      E
Sbjct:    62 REHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVTE 121

Query:   196 KLGMN---QAEFALDIEDYLIG 214
              LG+    +  F LD+EDYL G
Sbjct:   122 ILGIEPDREKGFHLDVEDYLSG 143

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_280084	hypothetical protein (240 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0006044001	hypothetical protein (307 aa)					•		•	•	0.685

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
pfam01997	187	pfam01997, Translin, Translin family	2e-17

>gnl|CDD|202084 pfam01997, Translin, Translin family

 Score = 76.1 bits (188), Expect = 2e-17
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 11/122 (9%)

Query: 94  SLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCE 153
             RE +  +  +I  +++     +  +H+        E+ +  +   KEL  +L E+L  
Sbjct: 2   DAREELIKISRDITRLSKKA---IFALHRGD-----AEEAEELLKEAKELLAKLKELLKG 53

Query: 154 CPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAE-FALDIEDYL 212
            P  YYR+   W +  Q  V  L F H+LETG L    E  E LG+   + F +  EDYL
Sbjct: 54  HP--YYRYSGAWSNALQEYVEALTFYHYLETGTLPSLEELGEILGVPVNDGFHVTPEDYL 111

Query: 213 IG 214
           +G
Sbjct: 112 LG 113

Members of this family include Translin that interacts with DNA and forms a ring around the DNA. This family also includes human translin-associated protein X, which was found to interact with translin with yeast two-hybrid screen. Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
KOG3067	226	consensus Translin family protein [General functio	100.0
PF01997	200	Translin: Translin family; InterPro: IPR002848 Tra	100.0
PRK14562	204	haloacid dehalogenase superfamily protein; Provisi	100.0
KOG3066	271	consensus Translin-associated protein X [General f	99.97
COG2178	204	Predicted RNA-binding protein of the translin fami	99.91
KOG4098	140	consensus Molecular chaperone Prefoldin, subunit 2	82.96

>KOG3067 consensus Translin family protein [General function prediction only]

Probab=100.00  E-value=1.4e-33  Score=239.44  Aligned_cols=142  Identities=39%  Similarity=0.619  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCchhHHhcHHHHHHHHHHHHHHHHHHhccCCCc
Q 027481           79 EKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS-RPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGE  157 (223)
Q Consensus        79 ~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~-~~~~~~l~~A~~~l~~i~~~~~~La~~l~~~p~~  157 (223)
                      .++|.++++.+|++|++||+|++++++||.++|.++..|+.+|+. +++++.|..|++.+..+++++..|++..+  +++
T Consensus         5 ~sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq~~~~LaE~~~--~~q   82 (226)
T KOG3067|consen    5 KSIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQKYRMLAELPP--AGQ   82 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhhcCC--ccc
Confidence            378999999999999999999999999999999999999999998 68999999999999999999999999999  899


Q ss_pred             cchhccccchhHHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCC---CccCcChhHHhhhhhhccccC
Q 027481          158 YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQ---AEFALDIEDYLIGEHSDECHI  222 (223)
Q Consensus       158 yYRY~~~ws~~lQE~VEalsf~~yLe~g~Llt~eEv~~~Lgv~~---~~f~L~~eDYLlGL~DLtGEi  222 (223)
                      ||||+++|++.+|..|+..+|++||++|.|+|+++|+++||++.   .+|||++||||.|++.|+.|+
T Consensus        83 yyry~~~w~~~~Q~vv~l~alv~~Let~~Llt~e~v~eilgl~p~~s~~FhLdvedyl~gvl~L~seL  150 (226)
T KOG3067|consen   83 YYRYNGHWRRSTQRVVSLPALVAWLETGTLLTREEVTEILGLEPDRSEGFHLDVEDYLSGVLFLASEL  150 (226)
T ss_pred             eEEecchHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHhcCCccccccceeeHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999987   689999999999999999875

>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments

Probab=100.00  E-value=5e-34  Score=244.22  Aligned_cols=124  Identities=32%  Similarity=0.534  Sum_probs=112.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CchhHHhcHHHHHHHHHHHHHHHHHHhccCCCccchhccccchhHH
Q 027481           93 GSLRERIRAVVNEIESITRLMHASLLHVHQSR--PLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQ  170 (223)
Q Consensus        93 ~d~RErI~kisRdIe~~tr~sk~vI~~lHr~~--~~~~~l~~A~~~l~~i~~~~~~La~~l~~~p~~yYRY~~~ws~~lQ  170 (223)
                      ||+||+|+++||||   ++.||++||.+||..  +..+++++|++.++++++.+++|+ +++  +.+||||++.|++++|
T Consensus         1 ~d~RE~iik~sRdi---~~~Sk~~I~~lhr~~~~~~~~~l~~a~~~l~~l~~~~~~l~-~~~--~~~~~~y~~~~s~~lQ   74 (200)
T PF01997_consen    1 HDRRERIIKLSRDI---TRLSKKIIFALHRIDQEKAEKILEEAEEKLKELKKLLKQLA-ELP--GHPFYRYHGAYSPGLQ   74 (200)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHCCTCTTHHHHHHHHHHHHHHHHHHCHSHHHH-HCT--TCGHHHHGGGTHHHHH
T ss_pred             CcHHHHHHHHHHHH---HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhhhc-ccC--CCcHHHHHHHHHHHHH
Confidence            79999999999999   999999999999983  355789999999999999999999 888  5569999999999999


Q ss_pred             HHHHHHHHHHHHhcCCccCHHHHHHHhCCCC---CccCcChhHHhhhhhhccccC
Q 027481          171 TVVSLLAFMHWLETGKLLMHTEAEEKLGMNQ---AEFALDIEDYLIGEHSDECHI  222 (223)
Q Consensus       171 E~VEalsf~~yLe~g~Llt~eEv~~~Lgv~~---~~f~L~~eDYLlGL~DLtGEi  222 (223)
                      |||||++|++||++|+|+|++|+++.||+..   ..|||+++|||+||+|||||+
T Consensus        75 E~vEa~~f~~~l~~~~L~t~~ev~~~l~~~~~~~~~~~v~~~dYL~Gl~DltGEL  129 (200)
T PF01997_consen   75 EYVEAISFYHYLETGRLLTPEEVGEILGFSEDDEDRFHVTPEDYLLGLADLTGEL  129 (200)
T ss_dssp             HHHHHHHHHHHHHHSSS--HHHHHHHCTCBSSTSCSSB--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHhhccccccceecCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875   689999999999999999996

They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.

>PRK14562 haloacid dehalogenase superfamily protein; Provisional

Probab=100.00  E-value=6e-33  Score=239.19  Aligned_cols=124  Identities=22%  Similarity=0.295  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHhcHHHHHHHHHHHHHHHHHHhccCCCc
Q 027481           78 MEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGE  157 (223)
Q Consensus        78 v~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~~~~~~~l~~A~~~l~~i~~~~~~La~~l~~~p~~  157 (223)
                      +.++|++++++||++||+||+|+++||||   ++.|+.+|+.+|+..     +++|++.++++++.+++|+++++++|  
T Consensus         2 ~~~~~~~~~~~Ld~~~~~RE~iik~sRdI---~~~Sk~~I~~lHr~~-----~~~a~~~l~~a~~~~~~l~~~~~~~~--   71 (204)
T PRK14562          2 IEEIIDSIREELEEKDEAREEALKLSREI---VRLSGDAIRAIHRGD-----FEEAEKLLKEAEELVKELKELLKDHP--   71 (204)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcc-----HHHHHHHHHHHHHHHHHHHHHhccCc--
Confidence            56789999999999999999999999999   999999999999953     78899999999999999999999555  


Q ss_pred             cchhccccchhHHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCccCcChhHHhhhhhhccccC
Q 027481          158 YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGEHSDECHI  222 (223)
Q Consensus       158 yYRY~~~ws~~lQE~VEalsf~~yLe~g~Llt~eEv~~~Lgv~~~~f~L~~eDYLlGL~DLtGEi  222 (223)
                      +|+|+++|++++||||||++|++||++|+|+|++|           |+|+++|||+||+|+|||+
T Consensus        72 ~~~y~~~~~~~lQEyvEA~~f~~~l~~~~l~s~ee-----------l~v~~~dYLlGl~Dl~GEL  125 (204)
T PRK14562         72 ELYYAGYVGTALQEYVEALLVYSLLFENKIPSPEE-----------LGVPEAAYLLGLADAIGEL  125 (204)
T ss_pred             hhhhhhhcchHHHHHHHHHHHHHHHcCCCCCCHHH-----------cCCCHHHHHhHHHHHHhHH
Confidence            89999999999999999999999999999999999           4578999999999999996

>KOG3066 consensus Translin-associated protein X [General function prediction only]

Probab=99.97  E-value=1.6e-32  Score=237.57  Aligned_cols=150  Identities=19%  Similarity=0.267  Sum_probs=134.3

Q ss_pred             CCCCCCCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCchhHHhcHHHHHHHHHH-H
Q 027481           68 TGGETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS---RPLSEVLEKPKAQVDGLKE-L  143 (223)
Q Consensus        68 ~~~~~~~~~~v~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~---~~~~~~l~~A~~~l~~i~~-~  143 (223)
                      .+.|++..++|++.|.+|+++|+++||+||||+|+||||   |.+||++||++||+   .+..+++.++...++.++. .
T Consensus        25 kartmsteSsm~~aF~sf~~~L~~~~dKrEriVklSRdI---Ti~SKr~IFllHr~ss~~~~e~~l~~~~~~le~vr~k~  101 (271)
T KOG3066|consen   25 KARTMSTESSMEEAFLSFKNFLQEDQDKRERIVKLSRDI---TIQSKRMIFLLHRTSSSGFPEPKLFDRTSILEKVRHKE  101 (271)
T ss_pred             cccccCccchHHHHHHHHHHHHHHhHHHHHHHHhhhhhh---eeccceeeeeeeecccCCCcchhhhhhhhHHHHHHHHH
Confidence            477889999999999999999999999999999999999   99999999999998   2345678888889987666 4


Q ss_pred             HHHHHHHhccCCCccchhccccchhHHHHHHHHHHHHHHhcCCccCHHHHHHHh-CCCC-CccCcChhHHhhhhhhcccc
Q 027481          144 YGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKL-GMNQ-AEFALDIEDYLIGEHSDECH  221 (223)
Q Consensus       144 ~~~La~~l~~~p~~yYRY~~~ws~~lQE~VEalsf~~yLe~g~Llt~eEv~~~L-gv~~-~~f~L~~eDYLlGL~DLtGE  221 (223)
                      +..|+.++.  +.++|+|+++++.|+||||||++|.+|+.+|+|.+.+|+..-| .+.. -...|++-||++|++|||||
T Consensus       102 f~~l~~EL~--G~d~~kf~rA~t~GlQEYVEAvtF~~f~lsgtLc~~dein~~lvpl~~~~rl~in~iDYvLGvaDlTGE  179 (271)
T KOG3066|consen  102 FESLKRELA--GLDADKFSRACTHGLQEYVEAVTFKFFLLSGTLCQTDEINSCLVPLDSSFRLSINFIDYVLGVADLTGE  179 (271)
T ss_pred             HHHHHHHhc--CCcHHHHHHhhcccHHHHHHHHHHHHHHHhccccchhhhhheecccCCccceeeeHHHHHHHHhhhHHH
Confidence            799999999  7779999999999999999999999999999999999998765 2222 35688999999999999999


Q ss_pred             C
Q 027481          222 I  222 (223)
Q Consensus       222 i  222 (223)
                      |
T Consensus       180 l  180 (271)
T KOG3066|consen  180 L  180 (271)
T ss_pred             H
Confidence            7

>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=2.7e-24  Score=183.94  Aligned_cols=123  Identities=22%  Similarity=0.329  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHhcHHHHHHHHHHHHHHHHHHhccCCCcc
Q 027481           79 EKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEY  158 (223)
Q Consensus        79 ~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~~~~~~~l~~A~~~l~~i~~~~~~La~~l~~~p~~y  158 (223)
                      .+.+.++++.|+++++.||++++++|+|   +|.|+.+|+.+|+++     .++|+..++++.+.+++|+..+.++|+.|
T Consensus         2 ~e~i~si~~~L~e~d~~REE~l~lsRei---~r~s~~aI~~~H~~~-----~eeA~~~l~~a~~~v~~Lk~~l~~~pel~   73 (204)
T COG2178           2 REEINSIREVLQEKDKAREEALKLSREI---VRLSGEAIFLLHRGD-----FEEAEKKLKKASEAVEKLKRLLAGFPELY   73 (204)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4679999999999999999999999999   999999999999976     89999999999999999999999999766


Q ss_pred             chhccccchhHHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCccCcChhHHhhhhhhccccC
Q 027481          159 YRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGEHSDECHI  222 (223)
Q Consensus       159 YRY~~~ws~~lQE~VEalsf~~yLe~g~Llt~eEv~~~Lgv~~~~f~L~~eDYLlGL~DLtGEi  222 (223)
                        |.+....++||||||.+|+.|+.+|.+++.+|    |||+       +.|||+||+|++||+
T Consensus        74 --~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~E----L~V~-------~~~YilGl~D~vGEL  124 (204)
T COG2178          74 --FAGFVTTALQEYVEATLLYSILKDGRLPSPEE----LGVP-------PIAYILGLADAVGEL  124 (204)
T ss_pred             --HHHhhcchHHHHHHHHHHHHHHhcCCCCCHHH----cCCC-------HHHHHHHHHHHHHHH
Confidence              77999999999999999999999999999999    8855       999999999999997

>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]

Probab=82.96  E-value=9.5  Score=31.51  Aligned_cols=45  Identities=16%  Similarity=0.297  Sum_probs=31.0

Q ss_pred             CcchHHHHHHHHHHHHhh--------hhhHHH--HHHHHHHHHHHHHHHHHHHHHh
Q 027481           74 APASMEKQFEDFRVKLDE--------AGSLRE--RIRAVVNEIESITRLMHASLLH  119 (223)
Q Consensus        74 ~~~~v~~~F~~fr~eLDe--------~~d~RE--rI~kisRdIe~~tr~sk~vI~~  119 (223)
                      ....+..+|..+|+++.+        +.|+||  .+++.-.++|. +|.+-++|--
T Consensus        16 ~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp-~RKCfRmIgG   70 (140)
T KOG4098|consen   16 SQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDP-TRKCFRMIGG   70 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCh-hhHHHHHhcc
Confidence            335578889999988743        345555  67777888766 6777766653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
3axj_A	249	High Resolution Crystal Structure Of C3po Length =		8e-13
3riu_A	218	Crystal Structure Of Drosophila Hexameric C3po Form		8e-13
4dg7_A	255	Low Resolution Structure Of Drosophila Translin Len		1e-12
2qrx_A	235	Crystal Structure Of Drosophila Melanogaster Transl		1e-12
2qva_A	247	Crystal Structure Of Drosophila Melanogaster Transl		1e-12
1key_A	235	Crystal Structure Of Mouse TestisBRAIN RNA-Binding		1e-10
1j1j_A	240	Crystal Structure Of Human Translin Length = 240		4e-10
3pja_A	228	Crystal Structure Of Human C3po Complex Length = 22		5e-10

>pdb|3AXJ|A Chain A, High Resolution Crystal Structure Of C3po Length = 249

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 82  FEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS-RPLSEVLEKPKAQVDGL 140
           F +++  +D    +RE IR VV EIE +++     L  +H     +S      + QV+  
Sbjct: 24  FSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELC 83
Query: 141 KELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM- 199
            + Y +LAE++    G+YYR+ + W   TQ ++ ++A + +LE G L+      E LG+ 
Sbjct: 84  AQKYQKLAELVP--AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEXLGLK 141
Query: 200 -NQAE-FALDIEDYLIG 214
            +Q+E F LD+EDYL+G
Sbjct: 142 ISQSEGFHLDVEDYLLG 158

>pdb|3RIU|A Chain A, Crystal Structure Of Drosophila Hexameric C3po Formed By Truncated Translin And Trax Length = 218

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 82  FEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS-RPLSEVLEKPKAQVDGL 140
           F +++  +D    +RE IR VV EIE +++     L  +H     +S      + QV+  
Sbjct: 11  FSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELC 70
Query: 141 KELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM- 199
            + Y +LAE++    G+YYR+ + W   TQ ++ ++A + +LE G L+      E LG+ 
Sbjct: 71  AQKYQKLAELVP--AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEXLGLK 128
Query: 200 -NQAE-FALDIEDYLIG 214
            +Q+E F LD+EDYL+G
Sbjct: 129 ISQSEGFHLDVEDYLLG 145

>pdb|4DG7|A Chain A, Low Resolution Structure Of Drosophila Translin Length = 255

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 82  FEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS-RPLSEVLEKPKAQVDGL 140
           F +++  +D    +RE IR VV EIE +++     L  +H     +S      + QV+  
Sbjct: 30  FSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELC 89
Query: 141 KELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM- 199
            + Y +LAE++    G+YYR+ + W   TQ ++ ++A + +LE G L+      E LG+ 
Sbjct: 90  AQKYQKLAELVP--AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLGLK 147
Query: 200 -NQAE-FALDIEDYLIG 214
            +Q+E F LD+EDYL+G
Sbjct: 148 ISQSEGFHLDVEDYLLG 164

>pdb|2QRX|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin Protein Length = 235

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 82  FEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS-RPLSEVLEKPKAQVDGL 140
           F +++  +D    +RE IR VV EIE +++     L  +H     +S      + QV+  
Sbjct: 10  FSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELC 69
Query: 141 KELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM- 199
            + Y +LAE++    G+YYR+ + W   TQ ++ ++A + +LE G L+      E LG+ 
Sbjct: 70  AQKYQKLAELVP--AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLGLK 127
Query: 200 -NQAE-FALDIEDYLIG 214
            +Q+E F LD+EDYL+G
Sbjct: 128 ISQSEGFHLDVEDYLLG 144

>pdb|2QVA|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin Protein Length = 247

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 82  FEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS-RPLSEVLEKPKAQVDGL 140
           F +++  +D    +RE IR VV EIE +++     L  +H     +S      + QV+  
Sbjct: 22  FSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELC 81
Query: 141 KELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM- 199
            + Y +LAE++    G+YYR+ + W   TQ ++ ++A + +LE G L+      E LG+ 
Sbjct: 82  AQKYQKLAELVP--AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLGLK 139
Query: 200 -NQAE-FALDIEDYLIG 214
            +Q+E F LD+EDYL+G
Sbjct: 140 ISQSEGFHLDVEDYLLG 156

>pdb|1KEY|A Chain A, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein (Tb-Rbp) Length = 235

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 74  APASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKP 133
           A  S+ + F + +  L     +RE IR VV  +E   R +   L  VHQ     ++ ++ 
Sbjct: 6   ATMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGTGFQDIPKRC 65
Query: 134 KAQVDGLKELYGRLAEVLCECPGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTE 192
               +    +   L  +  + P E YYRFH  WR   Q +V L AF+ +LET  L+    
Sbjct: 66  LKAREHFSTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREA 125
Query: 193 AEEKLGM---NQAEFALDIEDYLIG 214
             E LG+    +  F LD+EDYL G
Sbjct: 126 VTEILGIEPDREKGFHLDVEDYLSG 150

>pdb|1J1J|A Chain A, Crystal Structure Of Human Translin Length = 240

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 95  LRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCEC 154
           +RE IR VV  +E   R +   L  VHQ     ++ ++     +    +   L  +  + 
Sbjct: 32  IREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKF 91
Query: 155 PGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM---NQAEFALDIED 210
           P E YYRFH  WR   Q +V L AF+ +LET  L+      E LG+    +  F LD+ED
Sbjct: 92  PAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVED 151
Query: 211 YLIG 214
           YL G
Sbjct: 152 YLSG 155

>pdb|3PJA|A Chain A, Crystal Structure Of Human C3po Complex Length = 228

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 95  LRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCEC 154
           +RE IR VV  +E   R +   L  VHQ     ++ ++     +    +   L  +  + 
Sbjct: 20  IREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKF 79
Query: 155 PGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM---NQAEFALDIED 210
           P E YYRFH  WR   Q +V L AF+ +LET  L+      E LG+    +  F LD+ED
Sbjct: 80  PAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVED 139
Query: 211 YLIG 214
           YL G
Sbjct: 140 YLSG 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
3qb5_K	290	Translin-associated protein X; alpha helical bundl	3e-26
1j1j_A	240	Translin; testis/brain RNA binding protein, ssDNA	2e-25
3axj_A	249	GM27569P, translin; translin/TRAX heterodimer, pas	8e-24
3axj_B	298	TRAX, translin associated factor X, isoform B; tra	8e-19

>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J Length = 290

 Score =  101 bits (253), Expect = 3e-26
 Identities = 31/183 (16%), Positives = 74/183 (40%), Gaps = 23/183 (12%)

Query: 53  FRRRSSPLRVRYSSMTGGETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRL 112
           FR+R            G + ++ + +   F+ F+ +LD      ER+  +  +I   ++ 
Sbjct: 10  FRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKR 69

Query: 113 MHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTV 172
               L  +  +  + ++L + + ++DG+++   ++A+ L     + ++FH    +  Q  
Sbjct: 70  TIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQEL--SGEDMHQFHRAITTGLQEY 127

Query: 173 VSLLAFMHWLETGKLLMHTEAEEKLGM---------------------NQAEFALDIEDY 211
           V  ++F H+++T  L+   E  ++L                             +   DY
Sbjct: 128 VEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPVDY 187

Query: 212 LIG 214
           L+G
Sbjct: 188 LLG 190

>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A Length = 240

 Score = 98.6 bits (245), Expect = 2e-25
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 4/142 (2%)

Query: 77  SMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQ 136
           S+ + F + +  L     +RE IR VV  +E   R +   L  VHQ     ++ ++    
Sbjct: 14  SVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKA 73

Query: 137 VDGLKELYGRLAEVLCECPGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEE 195
            +    +   L  +  + P E YYRFH  WR   Q +V L AF+ +LET  L+      E
Sbjct: 74  REHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE 133

Query: 196 KLGMNQAE---FALDIEDYLIG 214
            LG+       F LD+EDYL G
Sbjct: 134 ILGIEPDREKGFHLDVEDYLSG 155

>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A Length = 249

 Score = 94.4 bits (234), Expect = 8e-24
 Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 8/150 (5%)

Query: 71  ETDAPASM--EKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS-RPLS 127
             D  ++      F +++  +D    +RE IR VV EIE +++     L  +H     +S
Sbjct: 11  SQDPMSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQIS 70

Query: 128 EVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKL 187
                 + QV+   + Y +LAE++    G+YYR+ + W   TQ ++ ++A + +LE G L
Sbjct: 71  AACGLARKQVELCAQKYQKLAELVP--AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFL 128

Query: 188 LMHTEAEEKLGMNQAE---FALDIEDYLIG 214
           +      E LG+  ++   F LD+EDYL+G
Sbjct: 129 VTRETVAEMLGLKISQSEGFHLDVEDYLLG 158

>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C Length = 298

 Score = 81.9 bits (201), Expect = 8e-19
 Identities = 22/159 (13%), Positives = 55/159 (34%), Gaps = 4/159 (2%)

Query: 54  RRRSSPLRVRYSSMTGGETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLM 113
                    R   +   + D  + + +QF  +  +L       ERI  +  +I   ++ +
Sbjct: 6   GAGHRNTAPRKRQIPAAQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRI 65

Query: 114 HASLLHVH-QSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGE-YYRFHNDWRSETQT 171
              L  +  + +   +VLE+ + +++ L  +      V  E   +  Y+F + +    Q 
Sbjct: 66  IFLLHSIDSRKQNKEKVLEEARQRLNKLIAVN--FRAVALELRDQDVYQFRSSYSPGLQE 123

Query: 172 VVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIED 210
            +    +M +L         E +        +  +   +
Sbjct: 124 FIQAYTYMEYLCHEDAEGENETKSVSDWQAIQAVMQYVE 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
3qb5_K	290	Translin-associated protein X; alpha helical bundl	100.0
3axj_A	249	GM27569P, translin; translin/TRAX heterodimer, pas	100.0
1j1j_A	240	Translin; testis/brain RNA binding protein, ssDNA	100.0
3axj_B	298	TRAX, translin associated factor X, isoform B; tra	100.0

>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J

Probab=100.00  E-value=1.3e-39  Score=292.29  Aligned_cols=147  Identities=19%  Similarity=0.353  Sum_probs=135.6

Q ss_pred             CCCCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCchhHHhcHHHHHHHHHHHHHHH
Q 027481           71 ETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS---RPLSEVLEKPKAQVDGLKELYGRL  147 (223)
Q Consensus        71 ~~~~~~~v~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~---~~~~~~l~~A~~~l~~i~~~~~~L  147 (223)
                      ..++++++..+|++|+++||++||+||+|+|+||||   |+.||++||.+||.   .+.+++|++|++.+++|++++++|
T Consensus        28 ~~~~~~~v~~~F~~~~~eLd~~~d~REriik~sRdI---t~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~i~~~~~~L  104 (290)
T 3qb5_K           28 DVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDI---TVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQV  104 (290)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            346778999999999999999999999999999999   99999999999998   246789999999999999999999


Q ss_pred             HHHhccCCCccchhccccchhHHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCC----C-----------------ccCc
Q 027481          148 AEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQ----A-----------------EFAL  206 (223)
Q Consensus       148 a~~l~~~p~~yYRY~~~ws~~lQE~VEalsf~~yLe~g~Llt~eEv~~~Lgv~~----~-----------------~f~L  206 (223)
                      +++++  +.+||||+++|++++||||||++|++||++|+|+|++||++.|+++.    +                 .|||
T Consensus       105 a~~l~--~~~~yry~~~~s~~lQEyVEA~sf~~yL~~~~Lit~eev~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  182 (290)
T 3qb5_K          105 AQELS--GEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRV  182 (290)
T ss_dssp             HHHHS--SSCSTTTGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHTTEECC--------------------CEECCC
T ss_pred             HHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhcccccccccccccccccccccccccceecC
Confidence            99999  55699999999999999999999999999999999999999999874    1                 3999


Q ss_pred             ChhHHhhhhhhccccC
Q 027481          207 DIEDYLIGEHSDECHI  222 (223)
Q Consensus       207 ~~eDYLlGL~DLtGEi  222 (223)
                      |++|||+||+|||||+
T Consensus       183 ~~eDYLlGL~DLtGEL  198 (290)
T 3qb5_K          183 TPVDYLLGVADLTGEL  198 (290)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999999996

>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A

Probab=100.00  E-value=5.6e-39  Score=282.65  Aligned_cols=142  Identities=29%  Similarity=0.500  Sum_probs=132.6

Q ss_pred             chHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC----CCchhHHhcHHHHHHHHHHHHHHHHHHh
Q 027481           76 ASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS----RPLSEVLEKPKAQVDGLKELYGRLAEVL  151 (223)
Q Consensus        76 ~~v~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~----~~~~~~l~~A~~~l~~i~~~~~~La~~l  151 (223)
                      +.+.++|+.|+++||+++|+||+|+|+||||   ++.|+++|+.+|+.    .+.++++++|++.++++++++++|++++
T Consensus        18 ~~i~~iF~~~~~~Ld~~~d~REriik~sRdI---t~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~~~~~L~~~l   94 (249)
T 3axj_A           18 FVNLDIFSNYQKYIDNEQEVRENIRIVVREI---EHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQKYQKLAELV   94 (249)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678899999999999999999999999999   78888888888876    3477889999999999999999999999


Q ss_pred             ccCCCccchhccccchhHHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCC---CccCcChhHHhhhhhhccccC
Q 027481          152 CECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQ---AEFALDIEDYLIGEHSDECHI  222 (223)
Q Consensus       152 ~~~p~~yYRY~~~ws~~lQE~VEalsf~~yLe~g~Llt~eEv~~~Lgv~~---~~f~L~~eDYLlGL~DLtGEi  222 (223)
                      +  +.+||||+++|++++||||||++|++||++|+|+|++|+++.||++.   ++|||+++|||+||+|||||+
T Consensus        95 ~--~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L~~~~~~~~~f~v~~edYLlGL~DLtGEL  166 (249)
T 3axj_A           95 P--AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLGLKISQSEGFHLDVEDYLLGILQLASEL  166 (249)
T ss_dssp             C--TTCHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTCBSSTTTSSBCCHHHHHHHHHHHHHHH
T ss_pred             c--cCchHHHhhhccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhccccCCCcccccCHHHHHHHHHHHHhHH
Confidence            9  55599999999999999999999999999999999999999999875   689999999999999999996

>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A

Probab=100.00  E-value=9.2e-39  Score=279.91  Aligned_cols=144  Identities=28%  Similarity=0.429  Sum_probs=132.1

Q ss_pred             CcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCchhHHhcHHHHHHHHHHHHHHH
Q 027481           74 APASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS------RPLSEVLEKPKAQVDGLKELYGRL  147 (223)
Q Consensus        74 ~~~~v~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~------~~~~~~l~~A~~~l~~i~~~~~~L  147 (223)
                      .+.++.++|+.|+++||+++|+||+|+++||||   ++.|+++|+.+|+.      .+.++++++|++.++++++++++|
T Consensus        11 ~~~~~~~~f~~~~~~Ld~~~d~REriik~sRdI---~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~L   87 (240)
T 1j1j_A           11 GSMSVSEIFVELQGFLAAEQDIREEIRKVVQSL---EQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSL   87 (240)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            345789999999999999999999999999999   78888888888776      246788999999999999999999


Q ss_pred             HHHhccCCCccchhccccchhHHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCC---CccCcChhHHhhhhhhccccC
Q 027481          148 AEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQ---AEFALDIEDYLIGEHSDECHI  222 (223)
Q Consensus       148 a~~l~~~p~~yYRY~~~ws~~lQE~VEalsf~~yLe~g~Llt~eEv~~~Lgv~~---~~f~L~~eDYLlGL~DLtGEi  222 (223)
                      +++++  +.+||||+++|++++||||||++|++||++|+|+|++|+++.||++.   ++||||++|||+||+|||||+
T Consensus        88 ~~~l~--~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L~~~~~~~~~f~v~~edYLlGL~DltGEL  163 (240)
T 1j1j_A           88 KTKFP--AEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVEDYLSGVLILASEL  163 (240)
T ss_dssp             HHTSC--GGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTCCCSSSSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHcc--cchHHHHhccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCccccccCcCCHHHHHHHHHHHHHHH
Confidence            99999  55599999999999999999999999999999999999999999865   689999999999999999996

>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C

Probab=100.00  E-value=8e-38  Score=281.57  Aligned_cols=148  Identities=17%  Similarity=0.287  Sum_probs=135.5

Q ss_pred             CCCCCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC----CCchhHHhcHHHHHHHHHHH-H
Q 027481           70 GETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS----RPLSEVLEKPKAQVDGLKEL-Y  144 (223)
Q Consensus        70 ~~~~~~~~v~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~----~~~~~~l~~A~~~l~~i~~~-~  144 (223)
                      .+++++++|.++|++|+++||++||+||+|+++||||   ++.||++|+.+||.    .+.+++|++|++.++++++. |
T Consensus        22 ~~~~~~~~v~~~F~~~~~~Ld~~~d~RErIikisRdI---t~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~   98 (298)
T 3axj_B           22 AQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDI---TIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNF   98 (298)
T ss_dssp             -CCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHH
T ss_pred             cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999999999   89999999999987    23567899999999999875 6


Q ss_pred             HHHHHHhccCCCccchhccccchhHHHHHHHHHHHHHHh---c------CCccCHHHHHHHhCCCCC-------------
Q 027481          145 GRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLE---T------GKLLMHTEAEEKLGMNQA-------------  202 (223)
Q Consensus       145 ~~La~~l~~~p~~yYRY~~~ws~~lQE~VEalsf~~yLe---~------g~Llt~eEv~~~Lgv~~~-------------  202 (223)
                      ++|+.+++  +.+||||+++|++++||||||++|++||+   +      |+|+|++||++.|+++.+             
T Consensus        99 ~~la~~l~--~~~~y~y~~~~s~~lQE~VEA~~f~~yL~~~~~~~~~~~~~L~t~eev~~~L~~~~~~~~~~~~~~~~~~  176 (298)
T 3axj_B           99 RAVALELR--DQDVYQFRSSYSPGLQEFIQAYTYMEYLCHEDAEGENETKSVSDWQAIQAVMQYVEESSQPKEEPTEGED  176 (298)
T ss_dssp             HHHHHHTT--TSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGCCCCCHHHHHHHCEEECCCC-----------
T ss_pred             HHHHHHcC--ccCHHHHHhccCHHHHHHHHHHHHHHHHhccccccccccCCCCCHHHHHHHhcccccccccccccccccc
Confidence            99999999  66699999999999999999999999999   8      999999999999987431             


Q ss_pred             -------------ccCcChhHHhhhhhhccccC
Q 027481          203 -------------EFALDIEDYLIGEHSDECHI  222 (223)
Q Consensus       203 -------------~f~L~~eDYLlGL~DLtGEi  222 (223)
                                   +|||+++|||+||+|||||+
T Consensus       177 ~~~d~~~~~~~~~~f~v~~edYLlGL~DLtGEL  209 (298)
T 3axj_B          177 VQAIAQVESPKKFQFFVDPTEYILGLSDLTGEL  209 (298)
T ss_dssp             ---------CCEEECCCCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCCHHHHHHHHHHHHhHH
Confidence                         79999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d1j1ja_	217	a.118.16.1 (A:) Translin {Human (Homo sapiens) [Ta	4e-30

>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (272), Expect = 4e-30
 Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 8/144 (5%)

Query: 77  SMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS---RPLSEVLEKP 133
           S+ + F + +  L     +RE IR VV  +E   R +   L  VHQ    + + +   K 
Sbjct: 2   SVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKA 61

Query: 134 KAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEA 193
           +     +K     L          YYRFH  WR   Q +V L AF+ +LET  L+     
Sbjct: 62  REHFGTVKTHLTSLKTKFPAEQ--YYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAV 119

Query: 194 EEKLGM---NQAEFALDIEDYLIG 214
            E LG+    +  F LD+EDYL G
Sbjct: 120 TEILGIEPDREKGFHLDVEDYLSG 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1j1ja_	217	Translin {Human (Homo sapiens) [TaxId: 9606]}	100.0

>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-39  Score=273.44  Aligned_cols=141  Identities=28%  Similarity=0.437  Sum_probs=132.3

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCchhHHhcHHHHHHHHHHHHHHHHHH
Q 027481           77 SMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS------RPLSEVLEKPKAQVDGLKELYGRLAEV  150 (223)
Q Consensus        77 ~v~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~------~~~~~~l~~A~~~l~~i~~~~~~La~~  150 (223)
                      ++.++|++|+++||+++|+||+|+++||||   ++.||++||.+||.      .+.++.+++|++.++++++.+.+|+++
T Consensus         2 ~~~~~F~~~~~~Ld~~~d~RE~lik~sRdI---~~~sk~~I~~Lhr~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~l~~~   78 (217)
T d1j1ja_           2 SVSEIFVELQGFLAAEQDIREEIRKVVQSL---EQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTK   78 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999   88899999998885      345678999999999999999999999


Q ss_pred             hccCCCccchhccccchhHHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCC---CccCcChhHHhhhhhhccccC
Q 027481          151 LCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQ---AEFALDIEDYLIGEHSDECHI  222 (223)
Q Consensus       151 l~~~p~~yYRY~~~ws~~lQE~VEalsf~~yLe~g~Llt~eEv~~~Lgv~~---~~f~L~~eDYLlGL~DLtGEi  222 (223)
                      ++  +.+||||++.|++++||||||++|++||++|+|+|++|+++.+|++.   ++|||+++|||+||+|||||+
T Consensus        79 ~~--~~~~y~y~~~~~~~lQE~vEA~~f~~~l~~~~l~s~eev~~~l~~~~~~~~~~~v~~~dYL~Gl~DltGEL  151 (217)
T d1j1ja_          79 FP--AEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVEDYLSGVLILASEL  151 (217)
T ss_dssp             SC--GGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTCCCSSSSSSCCCHHHHHHHHHHHHHHH
T ss_pred             cc--cCcHHHHHhHhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCccccCCCCHHHHHHHHHHHHHHH
Confidence            99  55699999999999999999999999999999999999999999986   689999999999999999996