Citrus Sinensis ID: 027491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MTFAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPN
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccEEEccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHEcccHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccccccccccccccccccccccccHHHHHHccccccccccHcHcccccccccccccccccccccccEEHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MTFAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHALLLcssspsytssrpsvyslsssatpiscpkttnfhlsttipqlgssLFSQWSglkhlgisvtpksvnllekkrrckrgvfyaslfgvgapEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEReiglddiststqnpnnlnrtdtmstppsvtstedsqtvadpn
Flexible Loop (DISEMBL)
MTFAFIKIilgrnkkqhHIFALKQMTIVTVMASSTHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLgisvtpksvnllekKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLrafqptirelqdVSREFKSTLereiglddiststqnpnnlnrtdtmstppsvtstedsqtvadpn
Low Complexity Region (SEG)
MTFAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHAlllcssspsytssrpsvyslsssATPISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPN
Disordered region (IsUnstruct)
**FAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHALLLC************************CPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL*******************************************************
Disordered Region (DISOPRED)
*TFAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHALLLCSSSP***********************************************KH*************************ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRA***************************************************************
Disordered Region (DISEMBL)
MTFAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHALLLCSSS******************PISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDT********************
Disordered Region (DISPRO)
MTFAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHALLLCSSS*******PSV**LSSSA*********NFHLSTTIPQLGSSLFSQWSGLKHLG*****************KRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIG***************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTFAFIKIILGRNKKQHHIFALKQMTIVTVMASSTHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q94G16	261	Sec-independent protein t	N/A	no	0.828	0.704	0.566	9e-52
Q9XH75	260	Sec-independent protein t	yes	no	0.734	0.626	0.654	1e-48
O48950	243	Sec-independent protein t	N/A	no	0.545	0.497	0.611	2e-35
Q2R237	247	Sec-independent protein t	yes	no	0.486	0.437	0.675	1e-34
Q5N2J3	91	Sec-independent protein t	yes	no	0.247	0.604	0.564	6e-12
Q31RR1	91	Sec-independent protein t	yes	no	0.247	0.604	0.564	6e-12
Q8DJ44	77	Sec-independent protein t	yes	no	0.274	0.792	0.540	6e-11
Q9XH46	137	Sec-independent protein t	N/A	no	0.292	0.474	0.416	4e-09
Q75GK3	170	Sec-independent protein t	no	no	0.319	0.417	0.4	2e-08
Q110N2	87	Sec-independent protein t	yes	no	0.319	0.816	0.391	2e-08

>sp|Q94G16|TATB_PEA Sec-independent protein translocase protein TATB, chloroplastic OS=Pisum sativum GN=TATB PE=1 SV=1

 Score =  203 bits (516), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 115/203 (56%), Positives = 134/203 (66%), Gaps = 19/203 (9%)

Query: 25  MTIVTVMASSTHALLLCSSSPSYTSSRPSVYSLS---SSATPISCPKTTNFHLSTTIPQL 81
           MT    +ASST  +LLC          P + + S   S+ TP S  K  +FHL +    L
Sbjct: 1   MTPSLAIASSTSTMLLC----------PKLGTCSMSLSTCTPTSHSKIHHFHLYS----L 46

Query: 82  GSSLFSQWSGLKHLGISVTPKS--VNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALL 139
           G  LF+ W+G K LG S  PK    + + KK RCK  V YASLFGVGAPEALVIGVVALL
Sbjct: 47  GKRLFTPWNGFKQLGFSTKPKKPLFHFIGKKGRCKGKVVYASLFGVGAPEALVIGVVALL 106

Query: 140 VFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNR 199
           VFGPKGLAEVARNLGKTLR FQPTIRE+QDVSREFKSTLEREIG+DDI+   Q+  + N 
Sbjct: 107 VFGPKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGIDDITNPLQSTYSSNV 166

Query: 200 TDTMSTPPSVTSTEDSQTVADPN 222
            +T  TP +   T +SQT  DPN
Sbjct: 167 RNTTPTPSATEITNNSQTAVDPN 189

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.
Pisum sativum (taxid: 3888)

>sp|Q9XH75|TATB_ARATH Sec-independent protein translocase protein TATB, chloroplastic OS=Arabidopsis thaliana GN=TATB PE=1 SV=1

 Score =  192 bits (489), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/171 (65%), Positives = 123/171 (71%), Gaps = 8/171 (4%)

Query: 31  MASSTHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQWS 90
           MA +   +   SSSP+ T S    Y    S    S P     +LS+    LGSS FS + 
Sbjct: 1   MAMALQIIASSSSSPTITKSHLFSYPPLQSRYKASKP-----NLSSWFSLLGSSRFSPYI 55

Query: 91  GLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVA 150
           GLKHLGIS++PKS N  EKKRRCK  +  ASLFGVGAPEALVIGVVALLVFGPKGLAEVA
Sbjct: 56  GLKHLGISISPKSSNP-EKKRRCKSMMIRASLFGVGAPEALVIGVVALLVFGPKGLAEVA 114

Query: 151 RNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTD 201
           RNLGKTLR FQPTIRELQDVSR+FKSTLEREIGLDDIST   N  N NRT+
Sbjct: 115 RNLGKTLRTFQPTIRELQDVSRDFKSTLEREIGLDDISTP--NVYNQNRTN 163

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Arabidopsis thaliana (taxid: 3702)

>sp|O48950|TATB_MAIZE Sec-independent protein translocase protein TATB, chloroplastic OS=Zea mays GN=TATB PE=1 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/134 (61%), Positives = 92/134 (68%), Gaps = 13/134 (9%)

Query: 89  WSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAE 148
           W G++   I     S  +    R  +R V  ASLFGVGAPEALVIGVVALLVFGPKGLAE
Sbjct: 37  WKGVEWGSIQTRMVSSFVAVGSRTRRRNVICASLFGVGAPEALVIGVVALLVFGPKGLAE 96

Query: 149 VARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPS 208
           VARNLGKTLRAFQPTIRELQDVSREF+STLEREIG+D++S ST       R  TM+    
Sbjct: 97  VARNLGKTLRAFQPTIRELQDVSREFRSTLEREIGIDEVSQSTN-----YRPTTMNN--- 148

Query: 209 VTSTEDSQTVADPN 222
                + Q  ADPN
Sbjct: 149 -----NQQPAADPN 157

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Zea mays (taxid: 4577)

>sp|Q2R237|TATB_ORYSJ Sec-independent protein translocase protein TATB, chloroplastic OS=Oryza sativa subsp. japonica GN=TATB PE=2 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/117 (67%), Positives = 89/117 (76%), Gaps = 9/117 (7%)

Query: 108 EKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167
           E KR  +    YASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL
Sbjct: 65  ESKRTSRGTGVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 124

Query: 168 QDVSREFKSTLEREIGLDDISTSTQNPNNLN-RTDTM--STPPSVTSTEDSQTVADP 221
           QDVSREF+STLEREIGLD++      P ++N R  TM  S  P++  + D +  A P
Sbjct: 125 QDVSREFRSTLEREIGLDEV------PPSMNYRPPTMNNSQQPAIDQSSDDKPEAAP 175

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5N2J3|TATA_SYNP6 Sec-independent protein translocase protein TatA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tatA PE=3 SV=1

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 7/62 (11%)

Query: 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER 180
           + FG+G PE LVI  +ALLVFGPK L E+ R+LGK LR F       QD SREF+S ++R
Sbjct: 2   NFFGIGLPEMLVILAIALLVFGPKKLPEIGRSLGKALRGF-------QDASREFESEIKR 54

Query: 181 EI 182
           EI
Sbjct: 55  EI 56

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

>sp|Q31RR1|TATA_SYNE7 Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (strain PCC 7942) GN=tatA PE=3 SV=1

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 7/62 (11%)

Query: 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER 180
           + FG+G PE LVI  +ALLVFGPK L E+ R+LGK LR F       QD SREF+S ++R
Sbjct: 2   NFFGIGLPEMLVILAIALLVFGPKKLPEIGRSLGKALRGF-------QDASREFESEIKR 54

Query: 181 EI 182
           EI
Sbjct: 55  EI 56

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|Q8DJ44|TATA_THEEB Sec-independent protein translocase protein TatA OS=Thermosynechococcus elongatus (strain BP-1) GN=tatA PE=3 SV=1

 Score = 67.8 bits (164), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 43/61 (70%)

Query: 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER 180
           ++FG+G PE +VI VVALL+FGPK L E+ R+LGKT RAF+   RE QD  +   + LE 
Sbjct: 2   NVFGIGLPELIVILVVALLIFGPKKLPEIGRSLGKTKRAFEEASREFQDEIKRQTAALEE 61

Query: 181 E 181
           E
Sbjct: 62  E 62

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|Q9XH46|TATA_PEA Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum GN=TATA PE=1 SV=1

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 7/72 (9%)

Query: 110 KRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169
           K R  +G    + FG+G PE +VI  VA LVFGPK L EV R++G+T+++F       Q 
Sbjct: 46  KTRTTKGFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSF-------QQ 98

Query: 170 VSREFKSTLERE 181
            ++EF++ L++E
Sbjct: 99  AAKEFETELKKE 110

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Pisum sativum (taxid: 3888)

>sp|Q75GK3|TATA_ORYSJ Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa subsp. japonica GN=TATA PE=2 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 9/80 (11%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLERE 181
           LFG+G PE +VI  VA LVFGPK L E+ R++GKT+++F       Q  ++EF++ L++E
Sbjct: 84  LFGLGVPELVVIAGVAALVFGPKQLPEIGRSIGKTVKSF-------QQAAKEFETELKKE 136

Query: 182 IGLDDISTSTQNPNNLNRTD 201
              DD       P     +D
Sbjct: 137 S--DDGGDQPPPPTETAVSD 154

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q110N2|TATA_TRIEI Sec-independent protein translocase protein TatA OS=Trichodesmium erythraeum (strain IMS101) GN=tatA PE=3 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER 180
           ++FG+G PE +VI VVALL+FGPK L E+ R+LG+ + +F+   R+ ++  +     LE 
Sbjct: 2   NIFGIGLPEMIVILVVALLIFGPKKLPEIGRSLGQAINSFKAGARDFENEFKREAKHLEE 61

Query: 181 EIGLDDISTSTQNP 194
            +    +STS   P
Sbjct: 62  GV---KVSTSASEP 72

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
224134885	259	predicted protein [Populus trichocarpa]	0.846	0.725	0.654	1e-55
118486079	259	unknown [Populus trichocarpa]	0.846	0.725	0.654	2e-55
255545224	255	conserved hypothetical protein [Ricinus	0.693	0.603	0.703	5e-54
224122318	264	predicted protein [Populus trichocarpa]	0.801	0.674	0.661	2e-53
388495850	260	unknown [Lotus japonicus]	0.635	0.542	0.748	2e-52
357443883	258	Sec-independent protein translocase prot	0.639	0.550	0.722	3e-51
388501106	238	unknown [Medicago truncatula]	0.725	0.676	0.610	4e-51
75250093	261	RecName: Full=Sec-independent protein tr	0.828	0.704	0.566	5e-50
356575990	236	PREDICTED: uncharacterized protein LOC10	0.734	0.690	0.630	6e-50
225464525	261	PREDICTED: uncharacterized protein LOC10	0.855	0.727	0.597	3e-49

>gi|224134885|ref|XP_002321929.1| predicted protein [Populus trichocarpa] gi|222868925|gb|EEF06056.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/194 (65%), Positives = 145/194 (74%), Gaps = 6/194 (3%)

Query: 30  VMAS-STHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQ 88
           VMAS  +++  LCS+S   TS++ ++Y L SS+  I   K   F LST+I   G   FSQ
Sbjct: 2   VMASLISNSAPLCSAS---TSTKSALYPLPSSSF-IPYHKAPQFGLSTSIALPGLGPFSQ 57

Query: 89  WSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAE 148
           WSGLKHL IS  P+ +   E+KRRCK  V +ASLFGVGAPEALVIGVVALLVFGPKGLAE
Sbjct: 58  WSGLKHLDISTPPRFIRK-ERKRRCKGKVIHASLFGVGAPEALVIGVVALLVFGPKGLAE 116

Query: 149 VARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPS 208
           VARNLGKTLRAFQPTI+ELQ+VSREFKSTLEREIGLD+IS  TQN  N   T+T STP S
Sbjct: 117 VARNLGKTLRAFQPTIKELQEVSREFKSTLEREIGLDEISNQTQNTYNSKITNTASTPSS 176

Query: 209 VTSTEDSQTVADPN 222
             ST  S TVADPN
Sbjct: 177 AGSTNISTTVADPN 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486079|gb|ABK94883.1| unknown [Populus trichocarpa]

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/194 (65%), Positives = 145/194 (74%), Gaps = 6/194 (3%)

Query: 30  VMAS-STHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQ 88
           VMAS  +++  LCS+S   TS++ ++Y L SS+  I   K   F LST+I   G   FSQ
Sbjct: 2   VMASLISNSAPLCSTS---TSTKSALYPLPSSSF-IPYHKAPQFGLSTSIALPGLGPFSQ 57

Query: 89  WSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAE 148
           WSGLKHL IS  P+ +   E+KRRCK  V +ASLFGVGAPEALVIGVVALLVFGPKGLAE
Sbjct: 58  WSGLKHLDISTPPRFIRK-ERKRRCKGKVIHASLFGVGAPEALVIGVVALLVFGPKGLAE 116

Query: 149 VARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPS 208
           VARNLGKTLRAFQPTI+ELQ+VSREFKSTLEREIGLD+IS  TQN  N   T+T STP S
Sbjct: 117 VARNLGKTLRAFQPTIKELQEVSREFKSTLEREIGLDEISNQTQNTYNSKITNTASTPSS 176

Query: 209 VTSTEDSQTVADPN 222
             ST  S TVADPN
Sbjct: 177 AGSTNISTTVADPN 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545224|ref|XP_002513673.1| conserved hypothetical protein [Ricinus communis] gi|223547581|gb|EEF49076.1| conserved hypothetical protein [Ricinus communis]

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/155 (70%), Positives = 124/155 (80%), Gaps = 1/155 (0%)

Query: 68  KTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGA 127
           K + F LS+ I  LG + FSQWSGLKHLG+S+ PK ++  E+KRRCK  V +ASLFGVGA
Sbjct: 34  KNSKFSLSSWISHLGIAPFSQWSGLKHLGVSLMPKFLS-KERKRRCKSMVVHASLFGVGA 92

Query: 128 PEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDI 187
           PEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFK+TLEREIGLDDI
Sbjct: 93  PEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKTTLEREIGLDDI 152

Query: 188 STSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPN 222
            +  +N  + NR +  S P S  S E+S T ADPN
Sbjct: 153 PSQRENMYSSNRANIASAPSSPASNENSPTEADPN 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122318|ref|XP_002318805.1| predicted protein [Populus trichocarpa] gi|222859478|gb|EEE97025.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 121/183 (66%), Positives = 134/183 (73%), Gaps = 5/183 (2%)

Query: 40  LCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISV 99
           LCS+S   TS++ ++Y L  S   I   K   F LST IPQL    FSQWSGLKHLGIS 
Sbjct: 13  LCSTS---TSTKSALYPLPPSPL-IPYHKAPKFGLSTWIPQLCLGPFSQWSGLKHLGISF 68

Query: 100 TPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRA 159
           +P  V   E+K RCK  V +ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLR 
Sbjct: 69  SPNFV-AKERKGRCKGKVIHASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRE 127

Query: 160 FQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVA 219
           FQPTI+ELQ+VSREFKSTLEREIGLD+IS  TQN  +   T+T S P S  ST  S TV 
Sbjct: 128 FQPTIKELQEVSREFKSTLEREIGLDEISNQTQNTYSSKITNTASNPSSAGSTNISPTVT 187

Query: 220 DPN 222
           DPN
Sbjct: 188 DPN 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495850|gb|AFK35991.1| unknown [Lotus japonicus]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/143 (74%), Positives = 118/143 (82%), Gaps = 2/143 (1%)

Query: 56  SLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKR 115
           SLS SATP +  K   FHLS+ +  +G SLFS W+GLKHLGIS  PK +  +++K RCK 
Sbjct: 23  SLSPSATPHT--KIQRFHLSSWLSPMGRSLFSPWNGLKHLGISTKPKPLFHIDRKGRCKG 80

Query: 116 GVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFK 175
            + YASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLR FQPTIRELQDVSREFK
Sbjct: 81  KLVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQDVSREFK 140

Query: 176 STLEREIGLDDISTSTQNPNNLN 198
           STLEREIGLDDIS+ TQNP N N
Sbjct: 141 STLEREIGLDDISSPTQNPYNSN 163

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443883|ref|XP_003592219.1| Sec-independent protein translocase protein tatA/E-like protein [Medicago truncatula] gi|355481267|gb|AES62470.1| Sec-independent protein translocase protein tatA/E-like protein [Medicago truncatula]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 104/144 (72%), Positives = 115/144 (79%), Gaps = 2/144 (1%)

Query: 81  LGSSLFSQWSGLKHLGISVTPKS--VNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVAL 138
           LG  LFS W+GLK+LG S+ PK    +++++K RCK  V YASLFGVGAPEALVIGVVAL
Sbjct: 44  LGHRLFSPWNGLKNLGFSIKPKKPFFHIIDRKGRCKGNVVYASLFGVGAPEALVIGVVAL 103

Query: 139 LVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLN 198
           LVFGPKGLAEVARNLGKTLR FQPTIRE+QDVSREFKSTLEREIGLDDIS  TQN  + N
Sbjct: 104 LVFGPKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGLDDISNPTQNTYSSN 163

Query: 199 RTDTMSTPPSVTSTEDSQTVADPN 222
             +T S PPS  ST  SQT  DPN
Sbjct: 164 VRNTTSAPPSTDSTNGSQTAVDPN 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501106|gb|AFK38619.1| unknown [Medicago truncatula]

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 113/185 (61%), Positives = 129/185 (69%), Gaps = 24/185 (12%)

Query: 58  SSSATPISCPK------------------TTNFHLSTTIPQLGSSLFSQWSGLKHLGISV 99
           SSS+T + CPK                  T +F+L +    LG  LFS W+GLK+LG S+
Sbjct: 7   SSSSTMLLCPKLGGTCSMSLSTTTSSYSKTQHFYLHS----LGHRLFSPWNGLKNLGFSI 62

Query: 100 TPKS--VNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTL 157
            PK    +++++K RCK  V YASLFGVGAPEALVIGVVALLVFGPKGLAEV RNLGKTL
Sbjct: 63  KPKKPFFHIIDRKGRCKGNVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVVRNLGKTL 122

Query: 158 RAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQT 217
           R FQPTIRE+QDVSREFKSTLEREIGLDDIS  TQN  + N  +T S PPS  ST  SQT
Sbjct: 123 REFQPTIREIQDVSREFKSTLEREIGLDDISNPTQNTYSSNVRNTTSAPPSTDSTNGSQT 182

Query: 218 VADPN 222
             DPN
Sbjct: 183 AVDPN 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75250093|sp|Q94G16.1|TATB_PEA RecName: Full=Sec-independent protein translocase protein TATB, chloroplastic; AltName: Full=Protein HIGH CHLOROPHYLL FLUORESCENCE 106; AltName: Full=Protein TWIN-ARGININE TRANSLOCATION B; Flags: Precursor gi|15277532|gb|AAK93949.1|AF284760_1 HCF106 [Pisum sativum]

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 115/203 (56%), Positives = 134/203 (66%), Gaps = 19/203 (9%)

Query: 25  MTIVTVMASSTHALLLCSSSPSYTSSRPSVYSLS---SSATPISCPKTTNFHLSTTIPQL 81
           MT    +ASST  +LLC          P + + S   S+ TP S  K  +FHL +    L
Sbjct: 1   MTPSLAIASSTSTMLLC----------PKLGTCSMSLSTCTPTSHSKIHHFHLYS----L 46

Query: 82  GSSLFSQWSGLKHLGISVTPKS--VNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALL 139
           G  LF+ W+G K LG S  PK    + + KK RCK  V YASLFGVGAPEALVIGVVALL
Sbjct: 47  GKRLFTPWNGFKQLGFSTKPKKPLFHFIGKKGRCKGKVVYASLFGVGAPEALVIGVVALL 106

Query: 140 VFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNR 199
           VFGPKGLAEVARNLGKTLR FQPTIRE+QDVSREFKSTLEREIG+DDI+   Q+  + N 
Sbjct: 107 VFGPKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGIDDITNPLQSTYSSNV 166

Query: 200 TDTMSTPPSVTSTEDSQTVADPN 222
            +T  TP +   T +SQT  DPN
Sbjct: 167 RNTTPTPSATEITNNSQTAVDPN 189

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575990|ref|XP_003556118.1| PREDICTED: uncharacterized protein LOC100799045 [Glycine max]

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 111/176 (63%), Positives = 124/176 (70%), Gaps = 13/176 (7%)

Query: 56  SLSSSATPISCPKTTN----------FHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVN 105
           SL  +++ +SCPK  N          FHLS+    L   LFS WSGLKHLGIS  PK + 
Sbjct: 4   SLVMASSSMSCPKLGNCAVSHTKFQAFHLSSMFSPLDRGLFSPWSGLKHLGISAKPKPLL 63

Query: 106 LLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165
            +++K  CK  V YASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR
Sbjct: 64  HIDRKGGCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 123

Query: 166 ELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADP 221
           ELQDVSREFKSTLEREIGLDD  + TQN  N N  +T    P+ +ST D     DP
Sbjct: 124 ELQDVSREFKSTLEREIGLDDNLSPTQNTYNSNVRNTT---PTSSSTVDPNGTLDP 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464525|ref|XP_002270827.1| PREDICTED: uncharacterized protein LOC100254207 [Vitis vinifera]

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/199 (59%), Positives = 142/199 (71%), Gaps = 9/199 (4%)

Query: 27  IVTVMASSTHALLLCSSSPSYTSSRPSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLF 86
           + T MAS      L  SSPS T S  ++Y+LSSS++ I  PK  +FH ST +PQ G   F
Sbjct: 1   MATPMASPIFTPTLFFSSPSTTKS--TIYALSSSSS-IPLPKGPSFHFSTLVPQPGLGPF 57

Query: 87  SQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGL 146
           S W+GL+HLGISV  KS+ +  ++ RCK  V YASLFGVGAPEALVIGVVALLVFGPKGL
Sbjct: 58  SSWNGLRHLGISVKQKSLKI-GRRGRCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGL 116

Query: 147 AEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQN---PNNLNRTDTM 203
           AEVARNLGKTLR FQPTI+ELQ+VS+EFKSTLE+EIG D+IS+S Q+   P   N T + 
Sbjct: 117 AEVARNLGKTLREFQPTIKELQEVSKEFKSTLEKEIGFDEISSSIQDTYRPRTTNPTTST 176

Query: 204 STPPSVTSTEDSQTVADPN 222
            +  S    EDS  V DPN
Sbjct: 177 PS--SNAGIEDSGNVVDPN 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2156722	260	HCF106 "HIGH CHLOROPHYLL FLUOR	0.684	0.584	0.7	2e-47
UNIPROTKB|Q94G16	261	TATB "Sec-independent protein	0.707	0.601	0.631	7.9e-46
UNIPROTKB|O48950	243	TATB "Sec-independent protein	0.545	0.497	0.639	2e-33
UNIPROTKB|Q9XH46	137	TATA "Sec-independent protein	0.486	0.788	0.379	5.8e-11
TAIR|locus:2184241	147	AT5G28750 [Arabidopsis thalian	0.554	0.836	0.298	2.5e-10
UNIPROTKB|Q9XFJ8	170	TATA "Sec-independent protein	0.247	0.323	0.467	4.7e-09
TIGR_CMR|GSU_0022	111	GSU_0022 "mttA/Hcf106 family p	0.270	0.540	0.409	1.1e-07
TIGR_CMR|CHY_2570	53	CHY_2570 "twin-arginine transl	0.198	0.830	0.454	3.2e-06
TIGR_CMR|BA_2242	61	BA_2242 "twin-arginine translo	0.252	0.918	0.375	1.2e-05
UNIPROTKB|P66889	83	tatA "Sec-independent protein	0.184	0.493	0.439	4.6e-05

TAIR|locus:2156722 HCF106 "HIGH CHLOROPHYLL FLUORESCENCE 106" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 112/160 (70%), Positives = 122/160 (76%)

Query:    68 KTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGA 127
             K +  +LS+    LGSS FS + GLKHLGIS++PKS N  EKKRRCK  +  ASLFGVGA
Sbjct:    33 KASKPNLSSWFSLLGSSRFSPYIGLKHLGISISPKSSNP-EKKRRCKSMMIRASLFGVGA 91

Query:   128 PEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDI 187
             PEALVIGVVALLVFGPKGLAEVARNLGKTLR FQPTIRELQDVSR+FKSTLEREIGLDDI
Sbjct:    92 PEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQDVSRDFKSTLEREIGLDDI 151

Query:   188 STSTQNPNNLNRTDTMSTPP-----SVTSTEDSQTVADPN 222
             ST   N  N NRT+ +  PP     SV STE   T  DPN
Sbjct:   152 STP--NVYNQNRTNPVQPPPPPPPPSVPSTEAPVTANDPN 189

GO:0005886 "plasma membrane" evidence=ISM

GO:0008565 "protein transporter activity" evidence=IEA

GO:0009306 "protein secretion" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009579 "thylakoid" evidence=IDA

GO:0009977 "proton motive force dependent protein transmembrane transporter activity" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0033281 "TAT protein transport complex" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

UNIPROTKB|Q94G16 TATB "Sec-independent protein translocase protein TATB, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 103/163 (63%), Positives = 117/163 (71%)

Query:    62 TPISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKS--VNLLEKKRRCKRGVFY 119
             TP S  K  +FHL +    LG  LF+ W+G K LG S  PK    + + KK RCK  V Y
Sbjct:    31 TPTSHSKIHHFHLYS----LGKRLFTPWNGFKQLGFSTKPKKPLFHFIGKKGRCKGKVVY 86

Query:   120 ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLE 179
             ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLR FQPTIRE+QDVSREFKSTLE
Sbjct:    87 ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLE 146

Query:   180 REIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPN 222
             REIG+DDI+   Q+  + N  +T  TP +   T +SQT  DPN
Sbjct:   147 REIGIDDITNPLQSTYSSNVRNTTPTPSATEITNNSQTAVDPN 189

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009977 "proton motive force dependent protein transmembrane transporter activity" evidence=IMP

GO:0033281 "TAT protein transport complex" evidence=IDA

GO:0043953 "protein transport by the Tat complex" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

UNIPROTKB|O48950 TATB "Sec-independent protein translocase protein TATB, chloroplastic" [Zea mays (taxid:4577)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 78/122 (63%), Positives = 89/122 (72%)

Query:    89 WSGLKHLGISVTPKSVNLLEKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAE 148
             W G++   I     S  +    R  +R V  ASLFGVGAPEALVIGVVALLVFGPKGLAE
Sbjct:    37 WKGVEWGSIQTRMVSSFVAVGSRTRRRNVICASLFGVGAPEALVIGVVALLVFGPKGLAE 96

Query:   149 VARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQ-NPNNLNRTDTMSTPP 207
             VARNLGKTLRAFQPTIRELQDVSREF+STLEREIG+D++S ST   P  +N     +  P
Sbjct:    97 VARNLGKTLRAFQPTIRELQDVSREFRSTLEREIGIDEVSQSTNYRPTTMNNNQQPAADP 156

Query:   208 SV 209
             +V
Sbjct:   157 NV 158

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009977 "proton motive force dependent protein transmembrane transporter activity" evidence=IDA

GO:0043953 "protein transport by the Tat complex" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IMP;IDA

UNIPROTKB|Q9XH46 TATA "Sec-independent protein translocase protein TATA, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 44/116 (37%), Positives = 67/116 (57%)

Query:    69 TTNFHLSTTIP-QLGSSLFSQWSGLKHLGISVTPKSVNLLEKKR---RCKRGVFYASLFG 124
             T +   S+ IP +L +S  S +S L  L  +    S+ LL+K R   R  +G    + FG
Sbjct:     4 TLSISSSSVIPTRLPNS--SCYSNLSFLSSNSNTSSL-LLKKARIKTRTTKGFTCNAFFG 60

Query:   125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ-DVSREFKSTLE 179
             +G PE +VI  VA LVFGPK L EV R++G+T+++FQ   +E + ++ +E   T E
Sbjct:    61 LGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPTEE 116

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009977 "proton motive force dependent protein transmembrane transporter activity" evidence=IMP

GO:0031361 "integral to thylakoid membrane" evidence=IDA

GO:0033281 "TAT protein transport complex" evidence=IDA

GO:0043953 "protein transport by the Tat complex" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2184241 AT5G28750 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 40/134 (29%), Positives = 70/134 (52%)

Query:    77 TIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKRRCK-----RGVFYASLFGVGAPEAL 131
             ++P L SS  S +S      ++  P + +L+   RR +     + +   +LFG+G PE  
Sbjct:    15 SLPLLSSSRSSFFSNC--FTVTTRPNTRSLVAIGRRIRQEPTRKPLTCNALFGLGVPELA 72

Query:   132 VIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTST 191
             VI  VA L+FGPK L E+ +++GKT+++FQ   +E +    E K+  E  +  +    +T
Sbjct:    73 VIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFES---ELKTEPEESVA-ESSQVAT 128

Query:   192 QNPNNLNRTDTMST 205
              N     +T+  S+
Sbjct:   129 SNKEEEKKTEVSSS 142

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009306 "protein secretion" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015031 "protein transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0033281 "TAT protein transport complex" evidence=IDA

UNIPROTKB|Q9XFJ8 TATA "Sec-independent protein translocase protein TATA, chloroplastic" [Zea mays (taxid:4577)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query:   122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLERE 181
             LFG+G PE  VI  VA LVFGPK L E+ R++GKT+++FQ         ++EF++ L++E
Sbjct:    85 LFGLGVPELAVIAGVAALVFGPKQLPEIGRSIGKTVKSFQ-------QAAKEFETELKKE 137

Query:   182 IG 183
              G
Sbjct:   138 PG 139

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009977 "proton motive force dependent protein transmembrane transporter activity" evidence=IMP

GO:0031361 "integral to thylakoid membrane" evidence=IDA

GO:0043953 "protein transport by the Tat complex" evidence=IMP

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IMP

TIGR_CMR|GSU_0022 GSU_0022 "mttA/Hcf106 family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 25/61 (40%), Positives = 42/61 (68%)

Query:   122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ-DVSREFKSTLER 180
             +FG+G PE +VI V+AL+V GP+ L ++AR+LGK L  F+    + Q +++ E ++  E+
Sbjct:     1 MFGIGMPELIVILVIALIVIGPQKLPDIARSLGKGLAEFKRASDDFQRNLAEEVRTLDEK 60

Query:   181 E 181
             E
Sbjct:    61 E 61

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|CHY_2570 CHY_2570 "twin-arginine translocation protein, TatA/E family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 109 (43.4 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query:   125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168
             +G PE L+I V+AL++FGP  L E+ R  GKT++ F+    E+Q
Sbjct:     5 IGIPELLIILVIALVIFGPAKLPEIGRAFGKTIKEFKKEATEIQ 48

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|BA_2242 BA_2242 "twin-arginine translocation protein, TatA/E family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 104 (41.7 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/56 (37%), Positives = 36/56 (64%)

Query:   125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER 180
             +G P  ++I V  L++FGPK L E+ + LG+TL+ F+ + +EL D + + K   E+
Sbjct:     5 IGFPGLILILVAVLILFGPKKLPEIGKALGETLKEFKKSTKELTDDAFQEKEKKEK 60

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

UNIPROTKB|P66889 tatA "Sec-independent protein translocase protein TatA" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 99 (39.9 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 18/41 (43%), Positives = 31/41 (75%)

Query:   132 VIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSR 172
             ++ VV +++FG K L + AR+LGK+LR F+  +RELQ+ ++
Sbjct:    11 ILAVVVIVLFGAKKLPDAARSLGKSLRIFKSEVRELQNENK 51

GO:0040007 "growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XH75	TATB_ARATH	No assigned EC number	0.6549	0.7342	0.6269	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XV3436 SubName- Full=Putative uncharacterized protein; (259 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
pfam02416	53	pfam02416, MttA_Hcf106, mttA/Hcf106 family	3e-19
PRK14857	90	PRK14857, tatA, twin arginine translocase protein	1e-18
TIGR01411	47	TIGR01411, tatAE, twin arginine-targeting protein	2e-14
COG1826	94	COG1826, TatA, Sec-independent protein secretion p	1e-13
PRK14858	108	PRK14858, tatA, twin arginine translocase protein	3e-11
TIGR01410	80	TIGR01410, tatB, twin arginine-targeting protein t	2e-10
PRK14861	61	PRK14861, tatA, twin arginine translocase protein	2e-10
PRK01371	137	PRK01371, PRK01371, sec-independent translocase; P	2e-09
PRK14860	64	PRK14860, tatA, twin arginine translocase protein	5e-09
PRK00575	92	PRK00575, tatA, twin arginine translocase protein	7e-09
PRK04098	158	PRK04098, PRK04098, sec-independent translocase; P	6e-08
PRK14859	63	PRK14859, tatA, twin arginine translocase protein	6e-07
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	2e-05
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	9e-05
PRK00191	84	PRK00191, tatA, twin arginine translocase protein	2e-04
PRK01919	169	PRK01919, tatB, sec-independent translocase; Provi	5e-04

>gnl|CDD|145520 pfam02416, MttA_Hcf106, mttA/Hcf106 family

 Score = 77.7 bits (192), Expect = 3e-19
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query: 125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKST 177
           +G PE L+I VVALL+FGPK L E+ R LGKTLR F+   +EL++   +    
Sbjct: 1   LGPPEWLIILVVALLLFGPKKLPELGRALGKTLREFKKATKELEEEDEKEAKD 53

Members of this protein family are involved in a sec independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts. Members of this family in E.coli are involved in export of redox proteins with a "twin arginine" leader motif. Length = 53

>gnl|CDD|184859 PRK14857, tatA, twin arginine translocase protein A; Provisional

 Score = 77.1 bits (190), Expect = 1e-18
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER-- 180
           FG+G PE  VI V+ALLVFGPK L E+ R+LGKTL+ FQ   +E +    E K  +    
Sbjct: 4   FGIGLPEMAVILVIALLVFGPKKLPEIGRSLGKTLKGFQEASKEFE---NEIKREMAEPE 60

Query: 181 EIGLDDISTSTQNPNNLNRTDTMSTPPSVT 210
           +         +   N  N+    +     +
Sbjct: 61  QEVKAPAELESNQTNEANQEQVDAENSPES 90

Length = 90

>gnl|CDD|213616 TIGR01411, tatAE, twin arginine-targeting protein translocase, TatA/E family

 Score = 64.9 bits (159), Expect = 2e-14
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169
           G+  PE L+I VV LL+FG K L E+ R+LGK ++ F+  ++E + 
Sbjct: 1   GLSPPEWLIILVVVLLLFGAKKLPELGRDLGKAIKEFKKAMKEEES 46

This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409 [Protein fate, Protein and peptide secretion and trafficking]. Length = 47

>gnl|CDD|224739 COG1826, TatA, Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)

Query: 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREI 182
           FG+G  E L+I VVALLVFGPK L E  R+LGK +R F+   +       + K+ L+ E+
Sbjct: 2   FGIGWSELLIILVVALLVFGPKKLPEAGRDLGKAIREFK---KAA----SDVKNELDEEL 54

Query: 183 GLDDISTSTQNPNNLNRTD 201
            L+++    +      +  
Sbjct: 55  KLEELDDKKKELTAELQAT 73

Length = 94

>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional

 Score = 58.0 bits (140), Expect = 3e-11
 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 7/60 (11%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLERE 181
           +FG+G PE +VI V+AL+V GP+ L ++AR+LG+ L        E +  + +FK +++ E
Sbjct: 1   MFGIGMPELIVILVIALIVIGPQKLPDLARSLGRGL-------AEFKKATDDFKQSMQEE 53

Length = 108

>gnl|CDD|130477 TIGR01410, tatB, twin arginine-targeting protein translocase TatB

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREI 182
           F +G  E L+I VVAL+V GP+ L    R +GK +R        L+ ++ + K+ L+ E+
Sbjct: 1   FDIGFSELLLIAVVALVVLGPERLPVAIRAVGKFVRR-------LRGMASDVKNELDEEL 53

Query: 183 GLDDISTSTQN 193
              ++    + 
Sbjct: 54  KAQELDEQLKK 64

This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 80

>gnl|CDD|237837 PRK14861, tatA, twin arginine translocase protein A; Provisional

 Score = 54.2 bits (131), Expect = 2e-10
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169
            +G P  ++I VVAL++FGPK L E+ + LGKTLR F+   +EL D
Sbjct: 4   NIGFPGLILILVVALIIFGPKKLPELGKALGKTLREFKKATKELTD 49

Length = 61

>gnl|CDD|179287 PRK01371, PRK01371, sec-independent translocase; Provisional

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREI 182
           FG+G  E +V+ V+A+LVFGP  L + AR+ G+TL       R+L++++   ++ L  E+
Sbjct: 2   FGIGPGELVVLVVLAVLVFGPDKLPKAARDAGRTL-------RQLREMANNARNDLRSEL 54

Query: 183 G 183
           G
Sbjct: 55  G 55

Length = 137

>gnl|CDD|184862 PRK14860, tatA, twin arginine translocase protein A; Provisional

 Score = 50.9 bits (122), Expect = 5e-09
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLERE 181
           +FG G PE +VI V+AL+VFGP  L ++ + LG  +R F+    E   V+   +   E +
Sbjct: 1   MFGFGMPELIVILVIALVVFGPAKLPQLGQALGGAIRNFKKASNEEDVVTINNEKGKEDQ 60

Length = 64

>gnl|CDD|234797 PRK00575, tatA, twin arginine translocase protein A; Provisional

 Score = 50.9 bits (122), Expect = 7e-09
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 9/98 (9%)

Query: 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIG 183
            +      ++ VV +L+FG K L + AR+LGK+LR F+  ++E+Q  ++   S    +  
Sbjct: 3   SLSPWHWAILAVVVILLFGAKKLPDAARSLGKSLRIFKSEVKEMQSDNKAEASAAAAQAP 62

Query: 184 LDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADP 221
                     P  +             ++    T A P
Sbjct: 63  -----YQVATPTPV----QSQRVDPAAASGQDSTEARP 91

Length = 92

>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLERE 181
           +FG+G  E LVI VVA++  GP  L +   ++ K  +A + TI +        KSTL++E
Sbjct: 1   MFGMGFFEILVILVVAIIFLGPDKLPQAMVDIAKFFKAVKKTINDA-------KSTLDKE 53

Query: 182 IGLDDISTSTQN 193
           I +++I      
Sbjct: 54  INIEEIKEEALK 65

Length = 158

>gnl|CDD|184861 PRK14859, tatA, twin arginine translocase protein A; Provisional

 Score = 45.1 bits (107), Expect = 6e-07
 Identities = 19/49 (38%), Positives = 32/49 (65%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDV 170
           +FG+G PE +VI V+ L+VFG   L E+   LGK+++ F+    E +++
Sbjct: 1   MFGIGMPELIVILVIVLIVFGAGKLPEIGGGLGKSIKNFKKATSEKEEI 49

Length = 63

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 15/76 (19%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARN----LGKTLRAFQPTIRELQDVSREFKST 177
           +FG+   E L++G+VALLV GP+ L   AR     +G+  R+F              K  
Sbjct: 1   MFGISFSELLLVGLVALLVLGPERLPGAARTAGLWIGRLKRSFN-----------AIKQE 49

Query: 178 LEREIGLDDISTSTQN 193
           +EREIG D+I     N
Sbjct: 50  VEREIGADEIRRQLHN 65

Length = 141

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 10/82 (12%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLE-- 179
           +F +G  E LVI +V ++V GPK       +L   LRAF      ++ ++ EF+   +  
Sbjct: 1   MFDIGWSELLVIAIVLIVVVGPK-------DLPPMLRAFGKMTARMRKMAGEFRRQFDEA 53

Query: 180 -REIGLDDISTSTQNPNNLNRT 200
            RE  LDD+  +  +  +LN  
Sbjct: 54  LREAELDDVRQTISDARSLNPR 75

Length = 209

>gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 30/45 (66%)

Query: 125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169
           +G  E  +I ++ +++FG K L + AR++G+++R F+  ++E+  
Sbjct: 3   LGPWEIGIIVLLIIVLFGAKKLPDAARSIGRSMRIFKSEVKEMSK 47

Length = 84

>gnl|CDD|234992 PRK01919, tatB, sec-independent translocase; Provisional

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 9/54 (16%)

Query: 133 IGVVALLVFGPKGLAEVARNLGKTL-RAFQPTIRELQDVSREFKSTLEREIGLD 185
           IGVVAL+V GP+ L  VAR  G    RA Q   R + DV    K+ + REI LD
Sbjct: 12  IGVVALVVIGPERLPRVARTAGALFGRA-Q---RYINDV----KAEVSREIELD 57

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
PRK14857	90	tatA twin arginine translocase protein A; Provisio	99.8
PRK14858	108	tatA twin arginine translocase protein A; Provisio	99.79
TIGR01410	80	tatB twin arginine-targeting protein translocase T	99.77
PRK00404	141	tatB sec-independent translocase; Provisional	99.77
PRK01770	171	sec-independent translocase; Provisional	99.76
PRK00708	209	sec-independent translocase; Provisional	99.75
PRK01919	169	tatB sec-independent translocase; Provisional	99.74
PRK04654	214	sec-independent translocase; Provisional	99.73
PRK04098	158	sec-independent translocase; Provisional	99.73
PRK03100	136	sec-independent translocase; Provisional	99.73
PRK01371	137	sec-independent translocase; Provisional	99.71
PRK00575	92	tatA twin arginine translocase protein A; Provisio	99.71
PRK00182	160	tatB sec-independent translocase; Provisional	99.7
COG1826	94	TatA Sec-independent protein secretion pathway com	99.69
PRK14861	61	tatA twin arginine translocase protein A; Provisio	99.69
PRK14860	64	tatA twin arginine translocase protein A; Provisio	99.68
PRK14859	63	tatA twin arginine translocase protein A; Provisio	99.67
PF02416	53	MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR0033	99.64
PRK01614	85	tatE twin arginine translocase protein A; Validate	99.63
PRK03625	67	tatE twin arginine translocase protein E; Validate	99.63
TIGR01411	47	tatAE twin arginine-targeting protein translocase,	99.62
PRK01833	74	tatA twin arginine translocase protein A; Provisio	99.62
PRK04598	81	tatA twin arginine translocase protein A; Provisio	99.6
PRK00442	92	tatA twin arginine translocase protein A; Provisio	99.59
PRK00191	84	tatA twin arginine translocase protein A; Provisio	99.58
PRK02958	73	tatA twin arginine translocase protein A; Provisio	99.57
PRK01470	51	tatA twin arginine translocase protein A; Provisio	99.57
PRK04561	75	tatA twin arginine translocase protein A; Provisio	99.57
PRK03554	89	tatA twin arginine translocase protein A; Provisio	99.54
PRK00720	78	tatA twin arginine translocase protein A; Provisio	99.52
PRK14858	108	tatA twin arginine translocase protein A; Provisio	83.59
PRK14857	90	tatA twin arginine translocase protein A; Provisio	83.51
PF12732	74	YtxH: YtxH-like protein; InterPro: IPR024623 This	83.22

>PRK14857 tatA twin arginine translocase protein A; Provisional

Probab=99.80  E-value=1.7e-19  Score=139.64  Aligned_cols=50  Identities=54%  Similarity=0.945  Sum_probs=47.1

Q ss_pred             ecccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          120 ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (222)
Q Consensus       120 ~~MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd  169 (222)
                      |.||||||+||+||+||+||||||+|||+++|++|+++|+||++.+++++
T Consensus         1 m~mF~iG~~ElliIlvVaLlvfGP~KLP~lar~lGk~i~~fkk~~~~~~~   50 (90)
T PRK14857          1 MNIFGIGLPEMAVILVIALLVFGPKKLPEIGRSLGKTLKGFQEASKEFEN   50 (90)
T ss_pred             CCcccccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999886653

>PRK14858 tatA twin arginine translocase protein A; Provisional

Probab=99.79  E-value=2.8e-19  Score=142.47  Aligned_cols=48  Identities=42%  Similarity=0.854  Sum_probs=45.8

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd  169 (222)
                      ||||||+||+||+||+||||||+|||+++|++|+++|+||++++++++
T Consensus         1 MF~iG~~ElliIlvVallvfGPkKLPelar~lGk~i~~fk~~~~d~k~   48 (108)
T PRK14858          1 MFGIGMPELIVILVIALIVIGPQKLPDLARSLGRGLAEFKKATDDFKQ   48 (108)
T ss_pred             CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999887654

>TIGR01410 tatB twin arginine-targeting protein translocase TatB

Probab=99.77  E-value=1.9e-19  Score=135.84  Aligned_cols=73  Identities=29%  Similarity=0.514  Sum_probs=60.6

Q ss_pred             cCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccccchhhcCCCCCCCCCC
Q 027491          123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDT  202 (222)
Q Consensus       123 FgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd~s~Efk~elerEi~ldeIrk~~q~~~~~~~tn~  202 (222)
                      |||||+|+++|+||+|+||||+|||+++|++|+++++||+++++       ++++++++.+.+|+++..++..+.+..++
T Consensus         1 f~ig~~EllvI~vvallv~GP~kLP~~~r~~G~~i~~~r~~~~~-------~~~~~~~e~~~~el~~~~~~~~~~~~~~~   73 (80)
T TIGR01410         1 FDIGFSELLLIAVVALVVLGPERLPVAIRAVGKFVRRLRGMASD-------VKNELDEELKAQELDEQLKKAQQLRFLNL   73 (80)
T ss_pred             CCCcHHHHHHHHHHHHheECchHHHHHHHHHHHHHHHHHHhhHh-------HHHHHHHHhchHhHHHHHHHHHHHhccCc
Confidence            89999999999999999999999999999999999999988874       45566677777888777665555444443

This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.

>PRK00404 tatB sec-independent translocase; Provisional

Probab=99.77  E-value=4.5e-19  Score=146.89  Aligned_cols=47  Identities=34%  Similarity=0.661  Sum_probs=44.1

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ  168 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk  168 (222)
                      ||||||+||+||+||+||||||+|||+++|++|+++++||+.+++.+
T Consensus         1 MF~IG~~ELlvI~VVaLlV~GPkkLP~laR~lG~~i~~~rr~~~~~k   47 (141)
T PRK00404          1 MFGISFSELLLVGLVALLVLGPERLPGAARTAGLWIGRLKRSFNAIK   47 (141)
T ss_pred             CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998776543

>PRK01770 sec-independent translocase; Provisional

Probab=99.76  E-value=2.2e-19  Score=152.50  Aligned_cols=48  Identities=27%  Similarity=0.544  Sum_probs=45.9

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd  169 (222)
                      ||||||+||+||+||+||||||+|||+++|++|+|+|+||++++++++
T Consensus         1 MF~IG~~ELllI~vVaLlV~GPerLP~~~r~lg~~i~~~R~~~~~~k~   48 (171)
T PRK01770          1 MFDIGFSELLLVFVIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQN   48 (171)
T ss_pred             CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999887654

>PRK00708 sec-independent translocase; Provisional

Probab=99.75  E-value=9.1e-19  Score=152.67  Aligned_cols=48  Identities=33%  Similarity=0.596  Sum_probs=46.3

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd  169 (222)
                      ||||||+||+||+||+||||||+|||+++|++|+++++||++.+++++
T Consensus         1 MFdIG~~ELlvI~vVaLvV~GPkrLP~~~R~lGk~v~k~R~~a~e~r~   48 (209)
T PRK00708          1 MFDIGWSELLVIAIVLIVVVGPKDLPPMLRAFGKMTARMRKMAGEFRR   48 (209)
T ss_pred             CCCccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987765

>PRK01919 tatB sec-independent translocase; Provisional

Probab=99.74  E-value=1.3e-18  Score=147.74  Aligned_cols=48  Identities=35%  Similarity=0.583  Sum_probs=45.6

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd  169 (222)
                      ||||||+||+||+|||||||||+|||+++|++|++++++|++++++++
T Consensus         1 MFdIG~~ElliI~VVALiV~GPekLP~~aRtlGk~i~k~Rr~~~d~K~   48 (169)
T PRK01919          1 MIDLGLSKLALIGVVALVVIGPERLPRVARTAGALFGRAQRYINDVKA   48 (169)
T ss_pred             CCCCcHHHHHHHHHHHHheeCchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999886653

>PRK04654 sec-independent translocase; Provisional

Probab=99.73  E-value=1.8e-18  Score=151.25  Aligned_cols=48  Identities=33%  Similarity=0.520  Sum_probs=45.0

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd  169 (222)
                      ||||||+||+||+||+||||||+|||+++|++|+++|+||+.++++++
T Consensus         1 MFgIG~~ELLlI~VVALlV~GPerLPe~aRtlGk~irk~R~~~~~vk~   48 (214)
T PRK04654          1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQ   48 (214)
T ss_pred             CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988776543

>PRK04098 sec-independent translocase; Provisional

Probab=99.73  E-value=2.8e-18  Score=144.40  Aligned_cols=48  Identities=35%  Similarity=0.605  Sum_probs=45.6

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd  169 (222)
                      ||||||+||+||+|||||||||+|||+++|++|+++|+||++++++++
T Consensus         1 MfgiG~~EllvI~vVaLlvfGP~KLP~~~r~lGk~ir~~K~~~~~~k~   48 (158)
T PRK04098          1 MFGMGFFEILVILVVAIIFLGPDKLPQAMVDIAKFFKAVKKTINDAKS   48 (158)
T ss_pred             CCCCcHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999887643

>PRK03100 sec-independent translocase; Provisional

Probab=99.73  E-value=2.1e-18  Score=141.98  Aligned_cols=48  Identities=27%  Similarity=0.437  Sum_probs=45.4

Q ss_pred             cc-CCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LF-GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (222)
Q Consensus       122 MF-gIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd  169 (222)
                      || ||||+||+||+||+||||||+|||+++|++|+++|+||++++++++
T Consensus         1 Mf~~iG~~EllvI~vVaLvv~GPkrLP~~~r~lG~~vr~~R~~~~~~~~   49 (136)
T PRK03100          1 MFANIGWGEMLVLVVAGLVILGPERLPGAIRWTARALRQARDYASGATS   49 (136)
T ss_pred             CcccccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78 6999999999999999999999999999999999999999987764

>PRK01371 sec-independent translocase; Provisional

Probab=99.71  E-value=4.4e-17  Score=134.48  Aligned_cols=55  Identities=38%  Similarity=0.724  Sum_probs=49.4

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLE  179 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd~s~Efk~ele  179 (222)
                      ||||||+||+||+||+||||||+|||+++|++|+++|+||+++++++   +++++++.
T Consensus         1 MfgIG~~EllvIlvVallvfGPeKLP~~ar~lg~~ir~~R~~~~~ak---~~i~~Elg   55 (137)
T PRK01371          1 MFGIGPGELVVLVVLAVLVFGPDKLPKAARDAGRTLRQLREMANNAR---NDLRSELG   55 (137)
T ss_pred             CCCccHHHHHHHHHHHhheeCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Confidence            89999999999999999999999999999999999999999988766   35555553

>PRK00575 tatA twin arginine translocase protein A; Provisional

Probab=99.71  E-value=3.1e-17  Score=127.83  Aligned_cols=48  Identities=35%  Similarity=0.636  Sum_probs=45.2

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd  169 (222)
                      |||||++||+||++|+||||||+|||+++|++|+++|+||++.+++++
T Consensus         1 m~~iG~~ElliIlvi~LllFGpkKLPel~r~lGk~ir~fK~a~~~~~~   48 (92)
T PRK00575          1 MGSLSPWHWAILAVVVILLFGAKKLPDAARSLGKSLRIFKSEVKEMQS   48 (92)
T ss_pred             CCcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            899999999999999999999999999999999999999988876553

>PRK00182 tatB sec-independent translocase; Provisional

Probab=99.70  E-value=1.2e-17  Score=140.81  Aligned_cols=48  Identities=29%  Similarity=0.517  Sum_probs=45.1

Q ss_pred             cc-CCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LF-GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (222)
Q Consensus       122 MF-gIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd  169 (222)
                      || ||||+||+||+||+||||||+|||+++|++|+++|+||+++++.++
T Consensus         1 MF~~IG~~EllvIlvIaLlVfGPerLP~~~r~lg~~ir~~R~~~~~~k~   49 (160)
T PRK00182          1 MFSSVGWGEILLLLIVGLIVIGPERLPRLIEDVRAALLAARTAINNAKQ   49 (160)
T ss_pred             CcccccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78 6999999999999999999999999999999999999999987653

>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]

Probab=99.69  E-value=5e-17  Score=124.85  Aligned_cols=48  Identities=50%  Similarity=0.895  Sum_probs=45.4

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd  169 (222)
                      ||+|||+||+||+||+||||||+|||+++|++|+++|+||+++++.++
T Consensus         1 M~~ig~~elliIlvV~lllfGpkKLP~l~r~~G~~i~~fKk~~~~~~~   48 (94)
T COG1826           1 MFGIGWSELLIILVVALLVFGPKKLPEAGRDLGKAIREFKKAASDVKN   48 (94)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHhhhHH
Confidence            889999999999999999999999999999999999999999886653

>PRK14861 tatA twin arginine translocase protein A; Provisional

Probab=99.69  E-value=3.5e-17  Score=118.70  Aligned_cols=49  Identities=47%  Similarity=0.805  Sum_probs=45.4

Q ss_pred             cccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (222)
Q Consensus       121 ~MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd  169 (222)
                      +|+||||+|+++|++|+|+||||+|||+++|++|+++|+||++.+++++
T Consensus         1 M~~~ig~~ElliI~vi~llvfGp~kLP~l~r~~G~~~~~fk~~~~~~~~   49 (61)
T PRK14861          1 MFSNIGFPGLILILVVALIIFGPKKLPELGKALGKTLREFKKATKELTD   49 (61)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3678999999999999999999999999999999999999998887654

>PRK14860 tatA twin arginine translocase protein A; Provisional

Probab=99.68  E-value=1.5e-17  Score=121.98  Aligned_cols=45  Identities=44%  Similarity=0.840  Sum_probs=43.4

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE  166 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~e  166 (222)
                      ||||||+|++||++|+||||||+|||+++|++|+++|+||+++++
T Consensus         1 MfgiG~~ElliI~vIalllfGp~kLP~l~r~lGk~ir~fkk~~~~   45 (64)
T PRK14860          1 MFGFGMPELIVILVIALVVFGPAKLPQLGQALGGAIRNFKKASNE   45 (64)
T ss_pred             CCCccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHccc
Confidence            899999999999999999999999999999999999999988775

>PRK14859 tatA twin arginine translocase protein A; Provisional

Probab=99.67  E-value=2.2e-17  Score=120.67  Aligned_cols=46  Identities=41%  Similarity=0.799  Sum_probs=44.0

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL  167 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~el  167 (222)
                      |||+|++||++|++|+|+||||+|||+++|++|+++|+||+++++.
T Consensus         1 MfgiG~~ElliIlvv~LlvfGp~kLP~l~r~lGk~i~~frk~~~~~   46 (63)
T PRK14859          1 MFGIGMPELIVILVIVLIVFGAGKLPEIGGGLGKSIKNFKKATSEK   46 (63)
T ss_pred             CCCccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999888754

>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism

Probab=99.64  E-value=2.5e-16  Score=110.76  Aligned_cols=45  Identities=56%  Similarity=0.928  Sum_probs=40.7

Q ss_pred             CChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (222)
Q Consensus       125 IG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd  169 (222)
                      ||++|+++|++|+++||||+|||+++|++|+++|+||++.++.++
T Consensus         1 ig~~El~iI~vvalllfGp~kLP~~~r~lG~~ir~fk~~~~~~~~   45 (53)
T PF02416_consen    1 IGFPELLIILVVALLLFGPKKLPELARSLGKAIREFKKAINEAKE   45 (53)
T ss_dssp             S-HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            699999999999999999999999999999999999999987664

This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.

>PRK01614 tatE twin arginine translocase protein A; Validated

Probab=99.63  E-value=1.3e-16  Score=122.81  Aligned_cols=47  Identities=28%  Similarity=0.619  Sum_probs=44.1

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ  168 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk  168 (222)
                      |||+|+|||+||++|+||+|||+|||+++|++|+.+|+||+.+++.+
T Consensus         1 M~GlG~~ELLIIlvIvLLLFG~kKLPeLgr~LGkaIkeFKka~~e~~   47 (85)
T PRK01614          1 MEGLSITKLLVVGILIVLLFGTSKLRTLGADLGAALKGFKKAMRNDD   47 (85)
T ss_pred             CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcccc
Confidence            89999999999999999999999999999999999999998776543

>PRK03625 tatE twin arginine translocase protein E; Validated

Probab=99.63  E-value=2.5e-16  Score=116.40  Aligned_cols=47  Identities=21%  Similarity=0.501  Sum_probs=44.1

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ  168 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk  168 (222)
                      |||||++||+||++|+||||||+|||+++|++|+++|+||+.+++..
T Consensus         1 M~~ig~~elliIlvI~lllFGpkKLp~lg~~lGk~i~~Fk~~~~~~~   47 (67)
T PRK03625          1 MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMNDDD   47 (67)
T ss_pred             CCCCcHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHhcccc
Confidence            89999999999999999999999999999999999999998776543

>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family

Probab=99.62  E-value=3.1e-16  Score=108.37  Aligned_cols=45  Identities=44%  Similarity=0.805  Sum_probs=42.5

Q ss_pred             CCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ  168 (222)
Q Consensus       124 gIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk  168 (222)
                      |+|++|+++|++|+++||||+|||+++|++|+++|+||+++++.+
T Consensus         1 gig~~ElliI~vi~llvfGp~kLP~~~r~lG~~i~~fk~~~~~~~   45 (47)
T TIGR01411         1 GLSPPEWLIILVVILLLFGAKKLPELGRDLGKAIKEFKKALKEEE   45 (47)
T ss_pred             CCCHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhhccc
Confidence            689999999999999999999999999999999999999887654

This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.

>PRK01833 tatA twin arginine translocase protein A; Provisional

Probab=99.62  E-value=3.6e-16  Score=117.57  Aligned_cols=47  Identities=23%  Similarity=0.515  Sum_probs=44.4

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ  168 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk  168 (222)
                      |||+|+|||+||++|+||+|||+|||+++|++|+++|+||+.+++.+
T Consensus         1 m~g~g~~elliIl~i~lllFG~kKLP~l~~~lGk~ik~Fkk~~~~~~   47 (74)
T PRK01833          1 MGGISIWQLLIIVAIIVLLFGTKKLRTLGTDLGESVKGFKKAMADDK   47 (74)
T ss_pred             CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence            89999999999999999999999999999999999999998887653

>PRK04598 tatA twin arginine translocase protein A; Provisional

Probab=99.60  E-value=4.6e-16  Score=118.79  Aligned_cols=46  Identities=28%  Similarity=0.581  Sum_probs=43.7

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL  167 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~el  167 (222)
                      |||+|+|||+||++|+||+|||+|||+++|++|+++|+||+++++.
T Consensus         1 m~glg~~elliIlvivlllFG~kKLPelg~~lGk~i~~FKk~~~~~   46 (81)
T PRK04598          1 MGGISIWQLLIIAVIVVLLFGTKKLRGIGSDLGSAVKGFKKAMSEE   46 (81)
T ss_pred             CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccc
Confidence            8999999999999999999999999999999999999999887754

>PRK00442 tatA twin arginine translocase protein A; Provisional

Probab=99.59  E-value=3.2e-15  Score=116.55  Aligned_cols=46  Identities=28%  Similarity=0.439  Sum_probs=43.3

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL  167 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~el  167 (222)
                      |+++|++||+||++|+||||||+|||+++|++|+++|+||+.+++.
T Consensus         1 Mg~~g~~elliIlvIvlllFG~~KLPelg~~lGk~ik~FKka~~e~   46 (92)
T PRK00442          1 MGIFDWKHWIVILVVVVLVFGTKKLKNLGSDVGESIKGFRKAMNED   46 (92)
T ss_pred             CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc
Confidence            8899999999999999999999999999999999999999877643

>PRK00191 tatA twin arginine translocase protein A; Provisional

Probab=99.58  E-value=1.2e-15  Score=117.19  Aligned_cols=47  Identities=28%  Similarity=0.640  Sum_probs=43.7

Q ss_pred             cCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD  169 (222)
Q Consensus       123 FgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd  169 (222)
                      +|||++||+||++|+||||||+|||+++|++|+++|+||++++++++
T Consensus         1 m~ig~~ElliI~vI~lllFGp~KLP~~~r~lGk~ir~FK~~~~~~~~   47 (84)
T PRK00191          1 MSLGPWEIGIIVLLIIVLFGAKKLPDAARSIGRSMRIFKSEVKEMSK   47 (84)
T ss_pred             CCCcHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            47999999999999999999999999999999999999998886653

>PRK02958 tatA twin arginine translocase protein A; Provisional

Probab=99.57  E-value=1.4e-15  Score=114.10  Aligned_cols=47  Identities=26%  Similarity=0.460  Sum_probs=44.0

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ  168 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk  168 (222)
                      |+++|+|||+||++|+||||||+|||+++|++|+++|+||+.+++.+
T Consensus         1 mg~~g~~elliIl~IvlllFG~kKLPelgr~lGkair~FK~~~~~~~   47 (73)
T PRK02958          1 MGSFSIWHWLIVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDGMKEGE   47 (73)
T ss_pred             CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence            78999999999999999999999999999999999999998877543

>PRK01470 tatA twin arginine translocase protein A; Provisional

Probab=99.57  E-value=1.6e-15  Score=107.00  Aligned_cols=45  Identities=24%  Similarity=0.532  Sum_probs=41.9

Q ss_pred             cCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHH
Q 027491          123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL  167 (222)
Q Consensus       123 FgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~el  167 (222)
                      .|||++|+++|++|+|+||||+|||+++|++|+++|+||+++++.
T Consensus         1 mgig~~elliI~vi~llvFGp~KLP~l~r~lG~~i~~Fk~~~~~~   45 (51)
T PRK01470          1 MGMSFSHLLIVLLIIFVLFGAGKLPQVMSDLAKGLKAFKDGMKDD   45 (51)
T ss_pred             CCCCHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhccc
Confidence            379999999999999999999999999999999999999877654

>PRK04561 tatA twin arginine translocase protein A; Provisional

Probab=99.57  E-value=1.1e-15  Score=115.44  Aligned_cols=47  Identities=30%  Similarity=0.452  Sum_probs=44.0

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ  168 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk  168 (222)
                      |+++|+|||+||++|+||+|||+|||+++|++|+++++||+.+++.+
T Consensus         1 Mgg~s~~ellIIlvIvlLlFG~~KLPel~r~lGk~ik~FKk~~~e~~   47 (75)
T PRK04561          1 MGSFSIWHWLVVLVIVLLVFGTKRLTSGAKDLGSAVKEFKKGMHDDD   47 (75)
T ss_pred             CCCCcHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence            88999999999999999999999999999999999999998777543

>PRK03554 tatA twin arginine translocase protein A; Provisional

Probab=99.54  E-value=3.4e-15  Score=115.91  Aligned_cols=46  Identities=26%  Similarity=0.591  Sum_probs=43.3

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL  167 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~el  167 (222)
                      |||+|+|||+||++|+||||||+|||+++|++|+++|+||+.+++.
T Consensus         1 M~glG~~eLlIIlvIvLLlFG~kKLPelgr~LGkaireFKka~~e~   46 (89)
T PRK03554          1 MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDD   46 (89)
T ss_pred             CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccc
Confidence            8899999999999999999999999999999999999999876643

>PRK00720 tatA twin arginine translocase protein A; Provisional

Probab=99.52  E-value=5.4e-15  Score=112.28  Aligned_cols=46  Identities=20%  Similarity=0.345  Sum_probs=43.3

Q ss_pred             ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHH
Q 027491          122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL  167 (222)
Q Consensus       122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~el  167 (222)
                      |+++|+|||+||++|+||+|||+|||+++|++|+++++||+.+++.
T Consensus         1 Mgg~g~~ellIIlvIvlllFG~kKLP~l~~~lGk~ik~FKk~~~~~   46 (78)
T PRK00720          1 MGSFSIWHWLIVLAVVLLLFGRGKISELMGDVAKGIKSFKKGMADD   46 (78)
T ss_pred             CCCCcHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccc
Confidence            8999999999999999999999999999999999999999777643

>PRK14858 tatA twin arginine translocase protein A; Provisional

Probab=83.59  E-value=2.1  Score=34.72  Aligned_cols=38  Identities=16%  Similarity=0.316  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccccch
Q 027491          152 NLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDIST  189 (222)
Q Consensus       152 ~lGK~iR~fR~~~~elkd~s~Efk~elerEi~ldeIrk  189 (222)
                      .|=...|.+-++++++++..++++++++++.+.+++++
T Consensus        24 KLPelar~lGk~i~~fk~~~~d~k~~i~~E~~~~e~~~   61 (108)
T PRK14858         24 KLPDLARSLGRGLAEFKKATDDFKQSMQEESRTAEEKE   61 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            34444555555666666666777777766555444443

>PRK14857 tatA twin arginine translocase protein A; Provisional

Probab=83.51  E-value=4.9  Score=31.57  Aligned_cols=38  Identities=24%  Similarity=0.469  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccccc
Q 027491          151 RNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDIS  188 (222)
Q Consensus       151 R~lGK~iR~fR~~~~elkd~s~Efk~elerEi~ldeIr  188 (222)
                      +.+-...|.+-++++++++..++++++++++.+-.+..
T Consensus        25 ~KLP~lar~lGk~i~~fkk~~~~~~~e~~~~~~~~~~~   62 (90)
T PRK14857         25 KKLPEIGRSLGKTLKGFQEASKEFENEIKREMAEPEQE   62 (90)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            55666667777777888888888888887655444433

>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria

Probab=83.22  E-value=2.5  Score=30.84  Aligned_cols=49  Identities=24%  Similarity=0.363  Sum_probs=38.0

Q ss_pred             HHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHH
Q 027491          131 LVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSRE-FKSTLE  179 (222)
Q Consensus       131 LVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd~s~E-fk~ele  179 (222)
                      .++++++-+++-|++=.++-+.+......+++...++.+...+ +++.++
T Consensus         9 a~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~   58 (74)
T PF12732_consen    9 AAAGAAAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAE   58 (74)
T ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888999999999999999999999888777766544433 444443

Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
2l16_A	78	SEC-independent protein translocase protein tatad;	9e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis} Length = 78

 Score = 76.5 bits (188), Expect = 9e-19
 Identities = 19/77 (24%), Positives = 38/77 (49%)

Query: 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLERE 181
              +G P  ++I V+AL++FGP  L E+ R  G+TL  F+   + L     + + + E  
Sbjct: 2   FSNIGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKSLVSGDEKEEKSAELT 61

Query: 182 IGLDDISTSTQNPNNLN 198
               D +   ++ ++ +
Sbjct: 62  AVKQDKNAGLEHHHHHH 78

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 5e-07
 Identities = 34/185 (18%), Positives = 70/185 (37%), Gaps = 26/185 (14%)

Query: 46  SYTSSRPSVYSLSSSATPISCPKTTNFH-LSTTIPQLGSSLFSQWSGLKHLGISVTPKSV 104
            Y   R  +Y+ +      +  +   +  L   + +L  +      G+   G +     V
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 105 NLLEKKRRCKR--GVFYASLFGVGAPEALVIGVVALLV-FGPKG--LAEVARNLGKTLRA 159
             L  K +CK    +F+ +L    +PE ++  +  LL    P     ++ + N+   + +
Sbjct: 171 -CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 160 FQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTD----TMSTPPSVTSTEDS 215
            Q  +R L   S+ +++ L   + L ++    QN    N  +     +     +T T   
Sbjct: 230 IQAELRRLL-KSKPYENCL---LVLLNV----QNAKAWNAFNLSCKIL-----LT-TRFK 275

Query: 216 QTVAD 220
           Q V D
Sbjct: 276 Q-VTD 279

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
2l16_A	78	SEC-independent protein translocase protein tatad;	99.77

>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}

Probab=99.77  E-value=1.6e-19  Score=135.09  Aligned_cols=70  Identities=26%  Similarity=0.484  Sum_probs=46.9

Q ss_pred             cccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccccchhhcCC
Q 027491          121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNP  194 (222)
Q Consensus       121 ~MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd~s~Efk~elerEi~ldeIrk~~q~~  194 (222)
                      +|||||++||+||+||+||||||+|||+++|++|+++|+||+++++.++..   +++. ++.++++++++++++
T Consensus         1 MMf~ig~~ElliIlvVaLlvfGpkkLP~l~r~lGk~ir~fK~~~~~~~~e~---~~~~-~~~el~~~~~~~~~~   70 (78)
T 2l16_A            1 MFSNIGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKSLVSGD---EKEE-KSAELTAVKQDKNAG   70 (78)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHHHHHHHHCC---C-------------------
T ss_pred             CCCCCCHHHHHHHHHHHhheeCccHhHHHHHHHHHHHHHHHHHHHHhHhhh---hHHh-hHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999999999999988765422   2222 334556666655544

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00