Citrus Sinensis ID: 027494

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV
ccccccHHHHHHHHHHHcccccccEEEEEEccEEEEEEEEcccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHccccEEEEEEEccccEEEEEcccHHHHccccccHHHHHccccccEEEEEEcccccccEEEEEcccccccccccccccccccHHHHHHHHHHHccccEEEEEEcccccEEEEEEEccccEEEEEEEEEEEEEEEEEc
cccccHHHHHHHHHHHHHccccccEEEEEEccEEEEEEEcccccccccccccccccccccEEEEccccccccccccccHHHHHHHHccccEEEEEEccccccEEEEEccHHHHHHccccHHHHHHcccccEEEEEEcccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEEEccccEEEEEEEEEEEEEEEEEc
MELCGHAALAAAHTLFSRglvnsntieFTTLSGILiakkvpdvkamndsnsqngeaqecyfieldfpaaptadfnfSEVSLILEALGVSSVVDMKITTTCEDIFVvlpsaksvtdlqpkfdemkkcpgtrgiivsglappesgfdfysrffcpkfgvnedpvcgsAYCALATYwsqklgkcdfvayaasprsgilnihLDEQNQRVQLRGKAITVMQGSLLV
MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLpsaksvtdlqpkFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV
MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV
***CGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPD**************QECYFIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAIT********
MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV
MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV
MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVP*******SNS*****QECYFIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query222 2.2.26 [Sep-21-2011]
Q9KG32265 Uncharacterized isomerase yes no 0.882 0.739 0.385 8e-30
Q9DCG6288 Phenazine biosynthesis-li yes no 0.882 0.680 0.354 3e-27
Q68G31288 Phenazine biosynthesis-li yes no 0.887 0.684 0.356 1e-25
Q9CXN7288 Phenazine biosynthesis-li no no 0.882 0.680 0.350 1e-25
P30039288 Phenazine biosynthesis-li yes no 0.896 0.690 0.350 7e-25
Q2HJF4288 Phenazine biosynthesis-li yes no 0.896 0.690 0.342 8e-25
Q9I073259 Uncharacterized isomerase yes no 0.842 0.722 0.354 1e-23
Q5RDZ1288 Phenazine biosynthesis-li yes no 0.905 0.697 0.339 3e-23
Q9HY42261 Uncharacterized isomerase no no 0.851 0.724 0.348 2e-22
Q9A3I3275 Uncharacterized isomerase yes no 0.864 0.698 0.325 2e-19
>sp|Q9KG32|Y283_BACHD Uncharacterized isomerase BH0283 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH0283 PE=3 SV=1 Back     alignment and function desciption
 Score =  130 bits (327), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 123/223 (55%), Gaps = 27/223 (12%)

Query: 1   MELCGHAALAAAHTLFSRGLVNSNT-IEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQEC 59
           ++LCGHA LA+AH L+    +++   I F T SGIL A             S+ GE    
Sbjct: 69  VDLCGHATLASAHILWELDHISAEQPITFYTKSGILTA-------------SKRGE---- 111

Query: 60  YFIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPK 119
            +IELDFP+      N     LI + LG+     + +     D  + + S + + +L P 
Sbjct: 112 -WIELDFPSEQPKQENVYPNELI-DGLGIQP---LYVGRNRFDYLIEIDSEQRLKELNPN 166

Query: 120 FDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLG 179
           F  +++   TRGIIV+  +   + +DF SR F P  GVNEDPV GSA+C L  YW +KL 
Sbjct: 167 FSLLEQI-DTRGIIVTSKST-STEYDFISRCFFPAVGVNEDPVTGSAHCCLGPYWQEKLN 224

Query: 180 KCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222
           K +F+AY AS R G+L I L  Q+ RV L G+A+TV++  LL+
Sbjct: 225 KNEFLAYQASKRGGMLKIKL--QHDRVFLLGQAVTVLRSELLL 265

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)
EC: 5EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q9DCG6|PBLD1_MOUSE Phenazine biosynthesis-like domain-containing protein 1 OS=Mus musculus GN=Pbld1 PE=2 SV=2 Back     alignment and function description
>sp|Q68G31|PBLD_RAT Phenazine biosynthesis-like domain-containing protein OS=Rattus norvegicus GN=Pbld PE=2 SV=1 Back     alignment and function description
>sp|Q9CXN7|PBLD2_MOUSE Phenazine biosynthesis-like domain-containing protein 2 OS=Mus musculus GN=Pbld2 PE=2 SV=1 Back     alignment and function description
>sp|P30039|PBLD_HUMAN Phenazine biosynthesis-like domain-containing protein OS=Homo sapiens GN=PBLD PE=1 SV=2 Back     alignment and function description
>sp|Q2HJF4|PBLD_BOVIN Phenazine biosynthesis-like domain-containing protein OS=Bos taurus GN=PBLD PE=2 SV=1 Back     alignment and function description
>sp|Q9I073|Y2770_PSEAE Uncharacterized isomerase PA2770 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA2770 PE=3 SV=1 Back     alignment and function description
>sp|Q5RDZ1|PBLD_PONAB Phenazine biosynthesis-like domain-containing protein OS=Pongo abelii GN=PBLD PE=2 SV=1 Back     alignment and function description
>sp|Q9HY42|Y3578_PSEAE Uncharacterized isomerase PA3578 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3578 PE=3 SV=1 Back     alignment and function description
>sp|Q9A3I3|YX21_CAUCR Uncharacterized isomerase CC_3221 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=CC_3221 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
255559496 489 phenazine biosynthesis protein, putative 0.995 0.451 0.680 7e-87
224109124295 predicted protein [Populus trichocarpa] 0.977 0.735 0.675 3e-81
449462324 337 PREDICTED: uncharacterized isomerase BH0 0.995 0.655 0.644 2e-77
449491555 494 PREDICTED: uncharacterized isomerase BH0 1.0 0.449 0.626 2e-77
449436561 494 PREDICTED: uncharacterized isomerase BH0 1.0 0.449 0.622 6e-77
356500212307 PREDICTED: uncharacterized isomerase BH0 0.995 0.719 0.645 7e-77
296086726303 unnamed protein product [Vitis vinifera] 0.990 0.726 0.612 4e-76
356541960232 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.995 0.952 0.617 6e-76
449525035309 PREDICTED: uncharacterized isomerase BH0 0.977 0.702 0.631 7e-76
359479805 536 PREDICTED: uncharacterized protein LOC10 0.990 0.410 0.612 8e-76
>gi|255559496|ref|XP_002520768.1| phenazine biosynthesis protein, putative [Ricinus communis] gi|223540153|gb|EEF41730.1| phenazine biosynthesis protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 151/222 (68%), Positives = 190/222 (85%), Gaps = 1/222 (0%)

Query: 1   MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECY 60
           ++LCGHA LAA+HT+FS GLVNS+ IEF TLSGIL AKKV ++   + S+ QNGEA E +
Sbjct: 269 VKLCGHATLAASHTIFSNGLVNSDIIEFDTLSGILTAKKVSEISKTDVSSIQNGEANELF 328

Query: 61  FIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKF 120
            IEL+FP   + +FN  +++ I +AL  +S++D++ TTT +D+FVVLPSAK+V++LQP+F
Sbjct: 329 LIELNFPTVLSTEFNSVDLAPISKALNGASIIDIRRTTTADDLFVVLPSAKAVSELQPQF 388

Query: 121 DEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGK 180
           D++ KCPG RGIIVSG+APPESGFDFYSRFFCPK+G+NEDPVCGSA+CALA YW +KLGK
Sbjct: 389 DDILKCPG-RGIIVSGVAPPESGFDFYSRFFCPKYGINEDPVCGSAHCALAPYWGKKLGK 447

Query: 181 CDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222
           CDF+AY ASPRSGIL+IHLDEQNQRV LRGKA+TVM+GSLLV
Sbjct: 448 CDFMAYQASPRSGILDIHLDEQNQRVLLRGKAVTVMEGSLLV 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224109124|ref|XP_002315091.1| predicted protein [Populus trichocarpa] gi|222864131|gb|EEF01262.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449462324|ref|XP_004148891.1| PREDICTED: uncharacterized isomerase BH0283-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449491555|ref|XP_004158935.1| PREDICTED: uncharacterized isomerase BH0283-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449436561|ref|XP_004136061.1| PREDICTED: uncharacterized isomerase BH0283-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356500212|ref|XP_003518927.1| PREDICTED: uncharacterized isomerase BH0283-like [Glycine max] Back     alignment and taxonomy information
>gi|296086726|emb|CBI32361.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356541960|ref|XP_003539440.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized isomerase BH0283-like [Glycine max] Back     alignment and taxonomy information
>gi|449525035|ref|XP_004169526.1| PREDICTED: uncharacterized isomerase BH0283-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359479805|ref|XP_002276833.2| PREDICTED: uncharacterized protein LOC100254487 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
TAIR|locus:2140265313 AT4G02860 [Arabidopsis thalian 0.972 0.690 0.553 3.1e-60
TAIR|locus:2014485286 AT1G03210 [Arabidopsis thalian 0.936 0.727 0.513 5.5e-54
TAIR|locus:2140250306 AT4G02850 [Arabidopsis thalian 0.945 0.686 0.460 1.5e-49
TIGR_CMR|CPS_3143260 CPS_3143 "phenazine biosynthes 0.657 0.561 0.343 3.1e-26
MGI|MGI:1915621288 Pbld1 "phenazine biosynthesis- 0.882 0.680 0.359 4.2e-24
RGD|621263288 Pbld1 "phenazine biosynthesis- 0.882 0.680 0.367 1.4e-23
ZFIN|ZDB-GENE-050417-456286 zgc:113291 "zgc:113291" [Danio 0.927 0.720 0.330 1.4e-23
MGI|MGI:1914557288 Pbld2 "phenazine biosynthesis- 0.882 0.680 0.354 3.8e-23
UNIPROTKB|P30039288 PBLD "Phenazine biosynthesis-l 0.891 0.687 0.362 6.1e-23
UNIPROTKB|J9P7Z1316 PBLD "Uncharacterized protein" 0.896 0.629 0.359 1.3e-22
TAIR|locus:2140265 AT4G02860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 124/224 (55%), Positives = 162/224 (72%)

Query:     1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECY 60
             ++LCGHA LA+AH LFS GLV+S+ +EF T SGIL AK+V D   ++D   + G     +
Sbjct:    96 VDLCGHATLASAHCLFSNGLVDSDMVEFVTRSGILTAKRVSDTSELSDGEVKGGT----F 151

Query:    61 FIELDFPAAPTADFNFSEVS--LILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQP 118
              IEL+FP   T D N S+VS  +I +AL  +++VD+K T T  +I VVLPS +SVT+LQP
Sbjct:   152 LIELNFPVVTTCDVNLSDVSSSMITKALNGATIVDIKATAT-NNILVVLPSKESVTELQP 210

Query:   119 KFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKL 178
             + D++ KCP   GIIV+      S +DFYSR+F PKFGV+EDPVCGSA+CALA YWS K+
Sbjct:   211 RMDDILKCP-CDGIIVTAAGSTGSSYDFYSRYFAPKFGVDEDPVCGSAHCALAHYWSIKM 269

Query:   179 GKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222
              K DF+AY AS RSG + IHLD++ QRV LRGKA+TVM+G +LV
Sbjct:   270 NKFDFLAYQASSRSGTIRIHLDKEKQRVLLRGKAVTVMEGHVLV 313
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0009058 "biosynthetic process" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2014485 AT1G03210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2140250 AT4G02850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3143 CPS_3143 "phenazine biosynthesis protein, PhzF family" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
MGI|MGI:1915621 Pbld1 "phenazine biosynthesis-like protein domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621263 Pbld1 "phenazine biosynthesis-like protein domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-456 zgc:113291 "zgc:113291" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1914557 Pbld2 "phenazine biosynthesis-like protein domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P30039 PBLD "Phenazine biosynthesis-like domain-containing protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P7Z1 PBLD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_X0673
hypothetical protein (295 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.1450000101
hypothetical protein (183 aa)
•       0.531
eugene3.13710002
Predicted protein (222 aa)
•       0.470
eugene3.51240001
annotation not avaliable (258 aa)
•       0.435
eugene3.213590001
Predicted protein (131 aa)
•       0.412
gw1.V.4683.1
annotation not avaliable (173 aa)
•       0.409

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
pfam02567280 pfam02567, PhzC-PhzF, Phenazine biosynthesis-like 2e-55
COG0384291 COG0384, COG0384, Predicted epimerase, PhzC/PhzF h 2e-30
PRK10281299 PRK10281, PRK10281, hypothetical protein; Provisio 1e-10
COG0253272 COG0253, DapF, Diaminopimelate epimerase [Amino ac 2e-06
TIGR00654297 TIGR00654, PhzF_family, phenazine biosynthesis pro 2e-05
TIGR00652268 TIGR00652, DapF, diaminopimelate epimerase 0.004
>gnl|CDD|217109 pfam02567, PhzC-PhzF, Phenazine biosynthesis-like protein Back     alignment and domain information 
 Score =  177 bits (451), Expect = 2e-55
 Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 25/230 (10%)

Query: 1   MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECY 60
           +  CGHA LA AH LF  G   + T+E  TL+GI+  K V             G   E  
Sbjct: 64  VPFCGHATLATAHALFEEGGNGNKTLELETLAGIVPVKLVEG---------DGGA--EG- 111

Query: 61  FIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKI---TTTCEDIFVVLPSAKSVTDLQ 117
            IE++FP       +  + +L+L  +G++    + I   +T    +FV L S +++  L 
Sbjct: 112 AIEMNFPEFDLPAVSREDDALLLAGIGLAFHEALPIAVKSTGLWHVFVPLSSLEALAALD 171

Query: 118 PKFD-EMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQ 176
           P  D  +  CP   G+IV   A   S  D+++R F P  G+ EDP  GSA  AL  Y S+
Sbjct: 172 PDLDAAIADCPD-DGVIVGPAASAGSPRDYHARMFAPALGIVEDPATGSAAGALGAYLSR 230

Query: 177 KLGKCDFV-----AYAASPRSGILNIHL---DEQNQRVQLRGKAITVMQG 218
              K  F         AS R G L + +     ++ RV++ G+A+TVM+G
Sbjct: 231 HGNKPQFGNIAIRQGQASGRPGTLEVEVEGRGGRDVRVRVTGRAVTVMEG 280

PhzC/PhzF is involved in dimerisation of two 2,3-dihydro-3-oxo-anthranilic acid molecules to create PCA by P. fluorescens. This family also contains an uncharacterized protein Rv2715 from Mycobacterium tuberculosis, though there is no significant sequence similarity to pfam00303 members. This family appears to be distantly related to pfam01678, including containing a weak internal duplication. However members of this family do not contain the conserved cysteines that are hypothesised to be active site residues (Bateman A pers obs). Length = 280
>gnl|CDD|223461 COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only] Back     alignment and domain information
>gnl|CDD|182354 PRK10281, PRK10281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|223331 COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|129739 TIGR00654, PhzF_family, phenazine biosynthesis protein PhzF family Back     alignment and domain information
>gnl|CDD|213546 TIGR00652, DapF, diaminopimelate epimerase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 222
PRK10281299 hypothetical protein; Provisional 100.0
COG0384291 Predicted epimerase, PhzC/PhzF homolog [General fu 100.0
KOG3033286 consensus Predicted PhzC/PhzF-type epimerase [Gene 100.0
TIGR00654297 PhzF_family phenazine biosynthesis protein PhzF fa 100.0
PF02567281 PhzC-PhzF: Phenazine biosynthesis-like protein; In 100.0
PRK00450274 dapF diaminopimelate epimerase; Provisional 100.0
TIGR00652268 DapF diaminopimelate epimerase. 99.97
PRK13577281 diaminopimelate epimerase; Provisional 99.96
PLN02536267 diaminopimelate epimerase 99.96
COG0253272 DapF Diaminopimelate epimerase [Amino acid transpo 99.95
PRK13969334 proline racemase; Provisional 99.31
PRK13971333 hydroxyproline-2-epimerase; Provisional 99.2
PF01678121 DAP_epimerase: Diaminopimelate epimerase; InterPro 99.08
PRK13970311 hydroxyproline-2-epimerase; Provisional 99.0
PF05544325 Pro_racemase: Proline racemase; InterPro: IPR00879 98.76
COG3938341 Proline racemase [Amino acid transport and metabol 98.73
PF01678121 DAP_epimerase: Diaminopimelate epimerase; InterPro 97.01
PRK13577 281 diaminopimelate epimerase; Provisional 95.5
COG0253 272 DapF Diaminopimelate epimerase [Amino acid transpo 95.23
TIGR00654 297 PhzF_family phenazine biosynthesis protein PhzF fa 95.14
PRK00450 274 dapF diaminopimelate epimerase; Provisional 94.89
TIGR00652 268 DapF diaminopimelate epimerase. 94.37
PF02567 281 PhzC-PhzF: Phenazine biosynthesis-like protein; In 91.57
PRK10281 299 hypothetical protein; Provisional 90.96
COG0384 291 Predicted epimerase, PhzC/PhzF homolog [General fu 90.29
PLN02536 267 diaminopimelate epimerase 89.78
>PRK10281 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.1e-43  Score=301.76  Aligned_cols=207  Identities=22%  Similarity=0.353  Sum_probs=168.3

Q ss_pred             CCCCChHHHHHHHHHHhcCCCCCCcEEEEeceeeEEEEEecCcccccCCCCCCCCCcceeEEEEeCCCCCCCC-CCcccH
Q 027494            1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTAD-FNFSEV   79 (222)
Q Consensus         1 i~~cGH~tlaaa~~l~~~~~~~~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~~v~~~~p~~~~~~-~~~~~~   79 (222)
                      ||||||||||++|+|++.+....+.++|+|++|.+++++..           ++   +.+.++|.+|.+.+.. ....+.
T Consensus        71 v~fcGHaTlaa~~~L~~~~~~~~~~~~~~t~~G~v~v~~~~-----------~~---~~~~~~~~~~~p~~~~~~~~~~~  136 (299)
T PRK10281         71 VPICGHATVAAHYVRATVLGLGNCTVWQTTLAGILPVDIEK-----------EN---DDYRISMTQGTPEFEPPLEGETR  136 (299)
T ss_pred             cccCCcHHHHHHHHHHHhCCCCCCcEEEEcCceEEEEEEEe-----------cC---CeEEEEEecCCCcccCCCCccCH
Confidence            79999999999999998876656679999999999999964           21   2346778887765442 222235


Q ss_pred             HHHHHHhCCCceeeee-------ecCCCceEEEEeCChhhhcccCCChhhHhcCCC---CceEEEEeeCCCCCcccEEEe
Q 027494           80 SLILEALGVSSVVDMK-------ITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPG---TRGIIVSGLAPPESGFDFYSR  149 (222)
Q Consensus        80 ~~l~~algl~~~~~~~-------~~~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~---~~gv~v~~~~~~~~~~~~~~R  149 (222)
                      ++++++||+++ .++.       +++|.+|++|+++|.++|.+++||++++.++++   ..|+++|+..+.+++.++++|
T Consensus       137 ~~l~~~lgl~~-~~i~~~~p~~~~~~G~~~liv~l~~~~~l~~~~pd~~~l~~l~~~~~~~g~~v~~~~~~~~~~~~~~R  215 (299)
T PRK10281        137 AAIINALGLTE-DDILPGLPIQVASTGHSKVMIPLKPEVDLDALSPNLAALTAISKQIGCNGFFPFQIRPGKNEILTDGR  215 (299)
T ss_pred             HHHHHHhCCCh-HHcCcCCCcEEEecCCceEEEEeCCHHHHHhCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCceEEEe
Confidence            77889999876 4432       678999999999999999999999999999874   368999887643334569999


Q ss_pred             ecCCCCCCCccCccccchhhhHHHHHhh-----hCC-ceEEEeec--cCCCeEEEEEEccCCC---eEEEeeeEEEEEEE
Q 027494          150 FFCPKFGVNEDPVCGSAYCALATYWSQK-----LGK-CDFVAYAA--SPRSGILNIHLDEQNQ---RVQLRGKAITVMQG  218 (222)
Q Consensus       150 ~f~p~~Gv~EDpatGSa~~ala~yl~~~-----~~~-~~~~~~Qg--~~r~g~l~v~~~~~~~---~v~v~G~a~~v~~G  218 (222)
                      +|+|..|+.||||||||+|+||+||.++     .++ ..+.++||  ++|+|+|+|+++.+++   +|+|+|+|+++++|
T Consensus       216 ~FaP~~Gi~EDPaTGSA~~aLa~yl~~~~~~~~~~~~~~~~~~QG~~~gR~g~l~~~~~~~~~~~~~V~vgG~av~v~~G  295 (299)
T PRK10281        216 MFAPAIGIVEDPVTGNANGPMGAYLVHHNLLPHDGKVLRFKGHQGRALGRDGTIEVTVTIRDNQPEKVTISGQAVILFHA  295 (299)
T ss_pred             eCCCCCCCccCcccchhhhHHHHHHHHcCCCCCCCceeEEEEEcCcCcCCCeEEEEEEEecCCCEEEEEEeeEEEEEEEE
Confidence            9999999999999999999999999752     123 46889999  6899999999964334   89999999999999


Q ss_pred             EEEC
Q 027494          219 SLLV  222 (222)
Q Consensus       219 ~i~~  222 (222)
                      +|.+
T Consensus       296 ~l~~  299 (299)
T PRK10281        296 EWAI  299 (299)
T ss_pred             EEeC
Confidence            9975

>COG0384 Predicted epimerase, PhzC/PhzF homolog [General function prediction only] Back     alignment and domain information
>KOG3033 consensus Predicted PhzC/PhzF-type epimerase [General function prediction only] Back     alignment and domain information
>TIGR00654 PhzF_family phenazine biosynthesis protein PhzF family Back     alignment and domain information
>PF02567 PhzC-PhzF: Phenazine biosynthesis-like protein; InterPro: IPR003719 Five genes, phzF, phzA, phzB, phzC and phzD, encode enzymes for phenazine biosynthesis in the biological control bacterium Pseudomonas chlororaphis (also known as Pseudomonas aureofaciens) Back     alignment and domain information
>PRK00450 dapF diaminopimelate epimerase; Provisional Back     alignment and domain information
>TIGR00652 DapF diaminopimelate epimerase Back     alignment and domain information
>PRK13577 diaminopimelate epimerase; Provisional Back     alignment and domain information
>PLN02536 diaminopimelate epimerase Back     alignment and domain information
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13969 proline racemase; Provisional Back     alignment and domain information
>PRK13971 hydroxyproline-2-epimerase; Provisional Back     alignment and domain information
>PF01678 DAP_epimerase: Diaminopimelate epimerase; InterPro: IPR001653 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway Back     alignment and domain information
>PRK13970 hydroxyproline-2-epimerase; Provisional Back     alignment and domain information
>PF05544 Pro_racemase: Proline racemase; InterPro: IPR008794 This family consists of proline racemase (5 Back     alignment and domain information
>COG3938 Proline racemase [Amino acid transport and metabolism] Back     alignment and domain information
>PF01678 DAP_epimerase: Diaminopimelate epimerase; InterPro: IPR001653 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway Back     alignment and domain information
>PRK13577 diaminopimelate epimerase; Provisional Back     alignment and domain information
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00654 PhzF_family phenazine biosynthesis protein PhzF family Back     alignment and domain information
>PRK00450 dapF diaminopimelate epimerase; Provisional Back     alignment and domain information
>TIGR00652 DapF diaminopimelate epimerase Back     alignment and domain information
>PF02567 PhzC-PhzF: Phenazine biosynthesis-like protein; InterPro: IPR003719 Five genes, phzF, phzA, phzB, phzC and phzD, encode enzymes for phenazine biosynthesis in the biological control bacterium Pseudomonas chlororaphis (also known as Pseudomonas aureofaciens) Back     alignment and domain information
>PRK10281 hypothetical protein; Provisional Back     alignment and domain information
>COG0384 Predicted epimerase, PhzC/PhzF homolog [General function prediction only] Back     alignment and domain information
>PLN02536 diaminopimelate epimerase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
4dun_A263 1.76a X-Ray Crystal Structure Of A Putative Phenazi 2e-22
1s7j_A262 Crystal Structure Of Phenazine Biosynthesis Protein 2e-21
1u1w_A298 Structure And Function Of Phenazine-biosynthesis Pr 6e-04
1t6k_A278 Crystal Structure Of Phzf From Pseudomonas Fluoresc 7e-04
1xub_A298 Structure And Function Of The Phenazine Biosyntheti 7e-04
>pdb|4DUN|A Chain A, 1.76a X-Ray Crystal Structure Of A Putative Phenazine Biosynthesis PhzcPHZF PROTEIN FROM CLOSTRIDIUM DIFFICILE (STRAIN 630) Length = 263 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 29/222 (13%)
Query: 1   MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECY 60
           ++LCGHA LAAA+ + +   VN   I+F T SG L               ++NG   E  
Sbjct: 69  IDLCGHATLAAAYVISNFIDVNVKKIDFFTQSGKL-------------EVTRNGNLYEMI 115
Query: 61  FIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKF 120
           F E+  P          E+ L  +   +   V   + ++  D+ ++L S + V + +P +
Sbjct: 116 FPEI-MPI---------EIELSPQQANLIGCVPSDVYSS-RDLILLLNSEQEVINYKPNY 164
Query: 121 DEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGK 180
            +++K     GII++      S  DF SR+FCP+   +EDPV GS++C L  YWS+KLGK
Sbjct: 165 AQLRKLTDWLGIIITAQG---SNTDFVSRYFCPELD-SEDPVTGSSHCNLIPYWSEKLGK 220
Query: 181 CDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222
              VA   S R GI+   + + N  V++ G+A+  MQG++ +
Sbjct: 221 HKMVAAQLSNRGGIIQCEVLKDNT-VKISGEAVLFMQGTIKI 261
>pdb|1S7J|A Chain A, Crystal Structure Of Phenazine Biosynthesis Protein Phzf Family (Enterococcus Faecalis) Length = 262 Back     alignment and structure
>pdb|1U1W|A Chain A, Structure And Function Of Phenazine-biosynthesis Protein Phzf From Pseudomonas Fluorescens 2-79 Length = 298 Back     alignment and structure
>pdb|1T6K|A Chain A, Crystal Structure Of Phzf From Pseudomonas Fluorescens 2-79 Length = 278 Back     alignment and structure
>pdb|1XUB|A Chain A, Structure And Function Of The Phenazine Biosynthetic Protein Phzf From Pseudomonas Fluorescens Length = 298 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
1s7j_A262 Phenazine biosynthesis protein PHZF family; bacter 2e-67
4dun_A263 Putative phenazine biosynthesis PHZC/PHZF protein; 6e-66
1ym5_A300 YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 i 5e-60
3edn_A299 Phenazine biosynthesis protein, PHZF family; diami 4e-50
1qya_A307 ORFB, hypothetical protein YDDE; putative phenazin 1e-46
1xub_A298 Phenazine biosynthesis protein PHZF; biosynthetic 4e-45
1u0k_A288 Gene product PA4716; sctructural genomics, MCSG, p 3e-31
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural PSI, protein structure initiative; 2.30A {Enterococcus faecalis} SCOP: d.21.1.2 Length = 262 Back     alignment and structure
 Score =  207 bits (529), Expect = 2e-67
 Identities = 66/222 (29%), Positives = 89/222 (40%), Gaps = 29/222 (13%)

Query: 1   MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECY 60
           ++LCGHA LA A  LF+   V   T+ FT+ SG L   K  +   ++             
Sbjct: 68  IDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKEEYYYLD------------- 114

Query: 61  FIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKF 120
                FP                 ALG              D+F VL   ++V  + P F
Sbjct: 115 -----FPYILPERIPILP--EYEAALGTKIYE----AYLGRDLFFVLKDEETVAKITPDF 163

Query: 121 DEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGK 180
             +K      G+IV          DF SR F PK  +NEDPVCGSA+  L  YW ++L +
Sbjct: 164 SALKALDLGVGVIV---TASGDSVDFVSRTFFPKLRINEDPVCGSAHANLIPYWGKRLNQ 220

Query: 181 CDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222
               AY  SPR G L   +     RV + G A    +G   +
Sbjct: 221 TTLSAYQVSPRGGFLTCEVK--ENRVIIGGTAKLFAKGEAYL 260
>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile} Length = 263 Back     alignment and structure
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae} Length = 300 Back     alignment and structure
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis} Length = 299 Back     alignment and structure
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A Length = 307 Back     alignment and structure
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A Length = 298 Back     alignment and structure
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2 Length = 288 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
4dun_A263 Putative phenazine biosynthesis PHZC/PHZF protein; 100.0
3edn_A299 Phenazine biosynthesis protein, PHZF family; diami 100.0
1s7j_A262 Phenazine biosynthesis protein PHZF family; bacter 100.0
1ym5_A300 YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 i 100.0
1xub_A298 Phenazine biosynthesis protein PHZF; biosynthetic 100.0
1qya_A307 ORFB, hypothetical protein YDDE; putative phenazin 100.0
1u0k_A288 Gene product PA4716; sctructural genomics, MCSG, p 100.0
2gke_A274 DAP epimerase, diaminopimelate epimerase; enzyme-i 100.0
2otn_A308 Diaminopimelate epimerase; DAP, lysine ME lanthion 100.0
3fve_A290 DAP epimerase, diaminopimelate epimerase; alpha/be 99.97
2azp_A318 Hypothetical protein PA1268; PA1268,APC5861,sulfur 99.96
3ejx_A317 DAP epimerase, diaminopimelate epimerase, chloropl 99.95
1tm0_A350 Proline racemase; structural genomics, alpha-beta 99.84
1w61_A414 B-cell mitogen; racemase, racemase pyridoxal phosp 99.8
2pw0_A397 PRPF methylaconitate isomerase; propionate catabol 97.29
3fve_A 290 DAP epimerase, diaminopimelate epimerase; alpha/be 96.05
1s7j_A 262 Phenazine biosynthesis protein PHZF family; bacter 95.87
3ejx_A 317 DAP epimerase, diaminopimelate epimerase, chloropl 95.83
1ym5_A 300 YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 i 95.14
1xub_A 298 Phenazine biosynthesis protein PHZF; biosynthetic 94.99
3edn_A 299 Phenazine biosynthesis protein, PHZF family; diami 94.97
2gke_A 274 DAP epimerase, diaminopimelate epimerase; enzyme-i 94.86
1u0k_A 288 Gene product PA4716; sctructural genomics, MCSG, p 94.7
2otn_A 308 Diaminopimelate epimerase; DAP, lysine ME lanthion 94.51
4dun_A 263 Putative phenazine biosynthesis PHZC/PHZF protein; 94.5
3g7k_A391 3-methylitaconate isomerase; DAPF family fold, clo 94.47
1qya_A 307 ORFB, hypothetical protein YDDE; putative phenazin 92.27
2azp_A 318 Hypothetical protein PA1268; PA1268,APC5861,sulfur 91.71
1tm0_A 350 Proline racemase; structural genomics, alpha-beta 87.88
1w61_A 414 B-cell mitogen; racemase, racemase pyridoxal phosp 87.23
>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile} Back     alignment and structure
Probab=100.00  E-value=2.6e-43  Score=296.12  Aligned_cols=192  Identities=34%  Similarity=0.606  Sum_probs=165.2

Q ss_pred             CCCCChHHHHHHHHHHhcCCCCCCcEEEEeceeeEEEEEecCcccccCCCCCCCCCcceeEEEEeCCCCCCCCCCcccHH
Q 027494            1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSEVS   80 (222)
Q Consensus         1 i~~cGH~tlaaa~~l~~~~~~~~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~~v~~~~p~~~~~~~~~~~~~   80 (222)
                      +|||||||||++++|++.+....+.++|+|++|.+++++..                +.  ++|.+|.+.+.+...  .+
T Consensus        69 v~~CGHatl~~a~~l~~~~~~~~~~~~~et~aG~l~v~~~~----------------~~--i~m~~p~~~~~~~~~--~~  128 (263)
T 4dun_A           69 IDLCGHATLAAAYVISNFIDVNVKKIDFFTQSGKLEVTRNG----------------NL--YEMIFPEIMPIEIEL--SP  128 (263)
T ss_dssp             ESCCHHHHHHHHHHHHHHTSTTCSEEEEEETTEEEEEEEET----------------TE--EEEEEECCCCEECCC--CH
T ss_pred             eccCCcHHHHHHHHHHHhcCCCCCeEEEEeCCeEEEEEEeC----------------CE--EEEeCCCCCccCCCC--HH
Confidence            58999999999999999876656789999999999999963                33  567777766555432  46


Q ss_pred             HHHHHhCCCceeeeeecCCCceEEEEeCChhhhcccCCChhhHhcCCCCceEEEEeeCCCCCcccEEEeecCCCCCCCcc
Q 027494           81 LILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNED  160 (222)
Q Consensus        81 ~l~~algl~~~~~~~~~~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~f~p~~Gv~ED  160 (222)
                      +++++||+.+ .++.  +| ++++++++|.+.|.+++||++++.++++..|+++|+..   ++.+|++|+|+|+.| +||
T Consensus       129 ~l~~aLg~~~-~~v~--~g-~~~~v~l~~~~~l~~l~pd~~~l~~l~~~~gv~v~~~~---~~~d~~~R~FaP~~G-~ED  200 (263)
T 4dun_A          129 QQANLIGCVP-SDVY--SS-RDLILLLNSEQEVINYKPNYAQLRKLTDWLGIIITAQG---SNTDFVSRYFCPELD-SED  200 (263)
T ss_dssp             HHHHHSSSCC-SEEE--ES-SSEEEECSCHHHHHHCCCCHHHHTTCTTCSCEEEEEEC---SSSSEEEEEEETTTT-EEE
T ss_pred             HHHHHcCCCH-HHeE--cC-CcEEEEECCHHHHHhCCCCHHHHHHhcCCceEEEEecC---CCceEEEEeecCCCC-CCC
Confidence            7889999988 5543  36 47999999999999999999999999666799999874   357899999999999 999


Q ss_pred             CccccchhhhHHHHHhhhCCceEEEeeccCCCeEEEEEEccCCCe-EEEeeeEEEEEEEEEEC
Q 027494          161 PVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQR-VQLRGKAITVMQGSLLV  222 (222)
Q Consensus       161 patGSa~~ala~yl~~~~~~~~~~~~Qg~~r~g~l~v~~~~~~~~-v~v~G~a~~v~~G~i~~  222 (222)
                      ||||||+|+|++||.+++++..+.++|++.|+|+|+|+++  +++ |+|+|+|+++++|+|.+
T Consensus       201 PvTGSa~~aLa~yl~~~l~~~~~~~~Q~~~R~G~l~v~~~--~~~~V~vgG~av~v~~G~i~~  261 (263)
T 4dun_A          201 PVTGSSHCNLIPYWSEKLGKHKMVAAQLSNRGGIIQCEVL--KDNTVKISGEAVLFMQGTIKI  261 (263)
T ss_dssp             SCCSTTHHHHHHHHHHHHTCSEEEEEECSSSCEEEEEEEC--SSSEEEEEECEEEEEEEEECC
T ss_pred             cccchhhHHHHHHHHHhcCCCcEEEEEEECCCEEEEEEEE--CCcEEEEEeEEEEEEEEEEEc
Confidence            9999999999999988788888999999999999999997  346 99999999999999975
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis} Back     alignment and structure
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural PSI, protein structure initiative; 2.30A {Enterococcus faecalis} SCOP: d.21.1.2 Back     alignment and structure
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae} Back     alignment and structure
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A Back     alignment and structure
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A Back     alignment and structure
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2 Back     alignment and structure
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomer; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A Back     alignment and structure
>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase; 2.40A {Bacillus anthracis str} Back     alignment and structure
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, isomerase, lysine biosy; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa} Back     alignment and structure
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A* Back     alignment and structure
>1tm0_A Proline racemase; structural genomics, alpha-beta protein THAT resembles doubl barrel, in EACH of which AN alpha helix is sandwiched, PSI; 2.80A {Brucella melitensis} SCOP: d.21.1.3 Back     alignment and structure
>1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent, stereo inversion, acid/base catalysis, homodimer, alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A Back     alignment and structure
>2pw0_A PRPF methylaconitate isomerase; propionate catabolism, diaminopimelate epimerase like, aconi binding, unknown function; HET: TRC; 1.57A {Shewanella oneidensis} PDB: 2pvz_A 2h9f_A Back     alignment and structure
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, isomerase, lysine biosy; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural PSI, protein structure initiative; 2.30A {Enterococcus faecalis} SCOP: d.21.1.2 Back     alignment and structure
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A* Back     alignment and structure
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae} Back     alignment and structure
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A Back     alignment and structure
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis} Back     alignment and structure
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomer; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A Back     alignment and structure
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2 Back     alignment and structure
>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase; 2.40A {Bacillus anthracis str} Back     alignment and structure
>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile} Back     alignment and structure
>3g7k_A 3-methylitaconate isomerase; DAPF family fold, closed conformation, open conformation; 2.70A {Eubacterium barkeri} Back     alignment and structure
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A Back     alignment and structure
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa} Back     alignment and structure
>1tm0_A Proline racemase; structural genomics, alpha-beta protein THAT resembles doubl barrel, in EACH of which AN alpha helix is sandwiched, PSI; 2.80A {Brucella melitensis} SCOP: d.21.1.3 Back     alignment and structure
>1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent, stereo inversion, acid/base catalysis, homodimer, alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 222
d1s7ja_260 d.21.1.2 (A:) Hypothetical protein EF0119 {Enteroc 1e-30
d1qy9a2168 d.21.1.2 (A:130-297) Hypothetical protein YddE {Es 8e-23
d1xuba2150 d.21.1.2 (A:129-278) Phenazine biosynthesis protei 1e-19
d1u0ka2153 d.21.1.2 (A:131-283) Hypothetical protein PA4716 { 5e-15
d1qy9a1127 d.21.1.2 (A:3-129) Hypothetical protein YddE {Esch 9e-07
d1xuba1128 d.21.1.2 (A:1-128) Phenazine biosynthesis protein 3e-05
d1u0ka1129 d.21.1.2 (A:2-130) Hypothetical protein PA4716 {Ps 2e-04
d2gkea2144 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Ha 2e-04
>d1s7ja_ d.21.1.2 (A:) Hypothetical protein EF0119 {Enterococcus faecalis [TaxId: 1351]} Length = 260 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Hypothetical protein EF0119
species: Enterococcus faecalis [TaxId: 1351]

 Score =  111 bits (278), Expect = 1e-30
 Identities = 63/222 (28%), Positives = 87/222 (39%), Gaps = 29/222 (13%)

Query: 1   MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECY 60
           ++LCGHA LA A  LF+   V   T+ FT+ SG L   K  +   ++             
Sbjct: 68  IDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKEEYYYLDFPYILPERIPILP 127

Query: 61  FIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKF 120
             E          +                           D+F VL   ++V  + P F
Sbjct: 128 EYEAALGTKIYEAY------------------------LGRDLFFVLKDEETVAKITPDF 163

Query: 121 DEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGK 180
             +K      G+IV          DF SR F PK  +NEDPVCGSA+  L  YW ++L +
Sbjct: 164 SALKALDLGVGVIV---TASGDSVDFVSRTFFPKLRINEDPVCGSAHANLIPYWGKRLNQ 220

Query: 181 CDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222
               AY  SPR G L   + E   RV + G A    +G   +
Sbjct: 221 TTLSAYQVSPRGGFLTCEVKE--NRVIIGGTAKLFAKGEAYL 260
>d1qy9a2 d.21.1.2 (A:130-297) Hypothetical protein YddE {Escherichia coli [TaxId: 562]} Length = 168 Back     information, alignment and structure
>d1xuba2 d.21.1.2 (A:129-278) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]} Length = 150 Back     information, alignment and structure
>d1u0ka2 d.21.1.2 (A:131-283) Hypothetical protein PA4716 {Pseudomonas aeruginosa [TaxId: 287]} Length = 153 Back     information, alignment and structure
>d1qy9a1 d.21.1.2 (A:3-129) Hypothetical protein YddE {Escherichia coli [TaxId: 562]} Length = 127 Back     information, alignment and structure
>d1xuba1 d.21.1.2 (A:1-128) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]} Length = 128 Back     information, alignment and structure
>d1u0ka1 d.21.1.2 (A:2-130) Hypothetical protein PA4716 {Pseudomonas aeruginosa [TaxId: 287]} Length = 129 Back     information, alignment and structure
>d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
d1s7ja_260 Hypothetical protein EF0119 {Enterococcus faecalis 100.0
d1xuba2150 Phenazine biosynthesis protein PhzF {Pseudomonas f 99.98
d1qy9a2168 Hypothetical protein YddE {Escherichia coli [TaxId 99.97
d1u0ka2153 Hypothetical protein PA4716 {Pseudomonas aeruginos 99.94
d2gkea2144 Diaminopimelate epimerase {Haemophilus influenzae 99.77
d1qy9a1127 Hypothetical protein YddE {Escherichia coli [TaxId 99.23
d1u0ka1129 Hypothetical protein PA4716 {Pseudomonas aeruginos 99.14
d1xuba1128 Phenazine biosynthesis protein PhzF {Pseudomonas f 99.13
d1tm0a_332 Proline racemase {Brucella melitensis [TaxId: 2945 99.03
d2gkea1130 Diaminopimelate epimerase {Haemophilus influenzae 98.58
d1qy9a1127 Hypothetical protein YddE {Escherichia coli [TaxId 96.85
d1xuba1128 Phenazine biosynthesis protein PhzF {Pseudomonas f 96.4
d2gkea1130 Diaminopimelate epimerase {Haemophilus influenzae 96.17
d1u0ka1129 Hypothetical protein PA4716 {Pseudomonas aeruginos 96.17
d2gkea2144 Diaminopimelate epimerase {Haemophilus influenzae 88.4
d2h9fa2209 Hypothetical protein PA0793 {Pseudomonas aeruginos 85.49
>d1s7ja_ d.21.1.2 (A:) Hypothetical protein EF0119 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Hypothetical protein EF0119
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=1.6e-35  Score=246.45  Aligned_cols=193  Identities=35%  Similarity=0.605  Sum_probs=148.5

Q ss_pred             CCCCChHHHHHHHHHHhcCCCCCCcEEEEeceeeEEEEEecCcccccCCCCCCCCCcceeEEEEeCCCCCCCCCCcccHH
Q 027494            1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSEVS   80 (222)
Q Consensus         1 i~~cGH~tlaaa~~l~~~~~~~~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~~v~~~~p~~~~~~~~~~~~~   80 (222)
                      ||||||||||+||+|++.+........+.+..+.+.+....                +.....+  |.....++..  ..
T Consensus        68 vpfcGH~Tlaaa~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~--~~~~~~~~~~--~~  127 (260)
T d1s7ja_          68 IDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKE----------------EYYYLDF--PYILPERIPI--LP  127 (260)
T ss_dssp             ESCCHHHHHHHHHHHHHHSCCCSSEEEEEETTEEEEEEEET----------------TEEEEEE--ECCCCEECCC--CH
T ss_pred             cccccchhHHHHHHHHHhCccccceeeEEeeccceeeeecc----------------ccccccc--cccCcccccc--ch
Confidence            69999999999999999988776777777788877776653                2322333  3332233322  12


Q ss_pred             HHHHHhCCCceeeeeecCCCceEEEEeCChhhhcccCCChhhHhcCCCCceEEEEeeCCCCCcccEEEeecCCCCCCCcc
Q 027494           81 LILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNED  160 (222)
Q Consensus        81 ~l~~algl~~~~~~~~~~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~f~p~~Gv~ED  160 (222)
                      .......... ..  .+ +..++++++.+.+.+.++.||++++.+++...+++.+...   ++.++++|+|+|..|+.||
T Consensus       128 ~~~~~~~~~~-~~--~~-~~~~~~~~~~~~~~l~~l~pd~~~l~~l~~~~~~~~~~~~---~~~~~~~R~F~P~~Gi~ED  200 (260)
T d1s7ja_         128 EYEAALGTKI-YE--AY-LGRDLFFVLKDEETVAKITPDFSALKALDLGVGVIVTASG---DSVDFVSRTFFPKLRINED  200 (260)
T ss_dssp             HHHHHHTSCC-SE--EE-ESSSEEEECSCHHHHHHCCCCHHHHHHCSSCSSEEEEEEC---SSSSEEEEEEEGGGTEEEE
T ss_pred             hhhhhcccce-eE--Ee-cCCcceeeecchhhhhhcCCCHHHHhhcCceEEEEEeecC---CcceEEEEEeccccCcCcc
Confidence            2222333333 11  22 3456777788999999999999999999875677665543   3678999999999999999


Q ss_pred             CccccchhhhHHHHHhhhCCceEEEeeccCCCeEEEEEEccCCCeEEEeeeEEEEEEEEEEC
Q 027494          161 PVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV  222 (222)
Q Consensus       161 patGSa~~ala~yl~~~~~~~~~~~~Qg~~r~g~l~v~~~~~~~~v~v~G~a~~v~~G~i~~  222 (222)
                      ||||||+|+|++||.+++++..+...|+++|+|.|+|+++  +++|+|+|+|+++++|+|+|
T Consensus       201 paTGSA~~~La~yl~~~~~~~~i~qgq~~~R~g~i~v~~~--~~~V~vgG~av~v~~G~l~i  260 (260)
T d1s7ja_         201 PVCGSAHANLIPYWGKRLNQTTLSAYQVSPRGGFLTCEVK--ENRVIIGGTAKLFAKGEAYL  260 (260)
T ss_dssp             SCCSTTHHHHHHHHHHHHTCSEEEEEECSSSCCEEEEEEE--TTEEEEEECEEEEEEEEEEC
T ss_pred             ccchhhHHHHHHHHHhccCCceEEEEEEeCCCcEEEEEEE--CCEEEEEeEEEEEEEEEEEC
Confidence            9999999999999998888877777888999999999997  56899999999999999986
>d1xuba2 d.21.1.2 (A:129-278) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1qy9a2 d.21.1.2 (A:130-297) Hypothetical protein YddE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u0ka2 d.21.1.2 (A:131-283) Hypothetical protein PA4716 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1qy9a1 d.21.1.2 (A:3-129) Hypothetical protein YddE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u0ka1 d.21.1.2 (A:2-130) Hypothetical protein PA4716 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1xuba1 d.21.1.2 (A:1-128) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1tm0a_ d.21.1.3 (A:) Proline racemase {Brucella melitensis [TaxId: 29459]} Back     information, alignment and structure
>d2gkea1 d.21.1.1 (A:1-130) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1qy9a1 d.21.1.2 (A:3-129) Hypothetical protein YddE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xuba1 d.21.1.2 (A:1-128) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d2gkea1 d.21.1.1 (A:1-130) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1u0ka1 d.21.1.2 (A:2-130) Hypothetical protein PA4716 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2h9fa2 d.21.1.4 (A:187-395) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure