Citrus Sinensis ID: 027513

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSAQGNLEDEGLVSATRSPDANSALQRLKDERDAAVRQTQLLQQDLDMLKRRGQRKGVRGFSLMFAAFVGLIGIMVGLILNLLLSSPPPTVPQND
cccccccccEEEcccEEEEEcccccEEEEEEEEEcccccEEEEEEEcccccEEEEEcccEEEcccccEEEEcccccccccccccEEEEEEEEEccccccccccccccccccccEEEEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
ccccccccEEEEcccHccccccccEEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEcccccEEEEEEccccccccccccEEEEEEEEcccccHHHccHHHHcccccccEEccEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
mtadggnqlisvhPEELKFIFELEKqgfcdlkvinntEHHVAFKvkttspkkyfvrpntgvvqpwdsciiraqresppdmqckdkfllqstivpsntdvddlppdtfnkdsgktieeCKLRVVYvspssaqgnledeglvsatrspdaNSALQRLKDERDAAVRQTQLLQQDLDMLKrrgqrkgvrGFSLMFAAFVGLIGIMVGLILNLllssppptvpqnd
mtadggnqlisvHPEELKFIFELEKQGFCDLKVINNTEHHVafkvkttspkkyfvrpntgvvqpwdSCIIRAQRESPPDMQCKDKFLLQSTIvpsntdvddlppdtfnkdsgktieecKLRVVYVspssaqgnledeglvsatrsPDANSALQRLKDERDAAVRQTQLLQQDLDMLKRRGQRKGVRGFSLMFAAFVGLIGIMVGLILNLllssppptvpqnd
MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSAQGNLEDEGLVSATRSPDANSALQRLKDERDAAVRqtqllqqdldmlKRRGQRKGVRGFSLMFAAFVgligimvglilnlllSSPPPTVPQND
*********ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRA************KFLLQSTI**********************IEECKLRVVYV*********************************************************KGVRGFSLMFAAFVGLIGIMVGLILNLLL***********
******N****VHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRAQRE*****QCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVV*******************************************************************MFAAFVGLIGIMVGLILNLLL***********
MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSAQGNLEDEGLVSATRSPDANSALQRLKDERDAAVRQTQLLQQDLDMLKRRGQRKGVRGFSLMFAAFVGLIGIMVGLILNLLLSSP********
******NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPS***************************K*ERDAAVRQTQLLQQDLDMLKRRGQRKGVRGFSLMFAAFVGLIGIMVGLILNLLLSSPPP******
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MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSAQGNLEDEGLVSATRSPDANSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxGQRKGVRGFSLMFAAFVGLIGIMVGLILNLLLSSPPPTVPQND
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query222 2.2.26 [Sep-21-2011]
Q9LVU1220 Vesicle-associated protei yes no 0.963 0.972 0.652 4e-79
Q84WW5239 Vesicle-associated protei no no 0.900 0.836 0.422 4e-38
Q9SHC8239 Vesicle-associated protei no no 0.842 0.782 0.390 5e-36
Q8VZ95256 Vesicle-associated protei no no 0.837 0.726 0.374 2e-35
B9DHD7 386 Vesicle-associated protei no no 0.549 0.316 0.523 6e-30
Q9SYC9 571 Vesicle-associated protei no no 0.657 0.255 0.402 3e-26
O82213149 Vesicle-associated protei no no 0.567 0.845 0.407 2e-23
Q10484319 Uncharacterized protein C yes no 0.468 0.326 0.360 5e-10
O60119 383 Vesicle-associated membra no no 0.463 0.268 0.35 7e-10
A2VDZ9243 Vesicle-associated membra yes no 0.774 0.707 0.272 5e-09
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function desciption
 Score =  293 bits (751), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 143/219 (65%), Positives = 171/219 (78%), Gaps = 5/219 (2%)

Query: 1   MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTG 60
           MT  G NQLIS+ P+ELKF+FELEKQ +CDLKV N TE++VAFKVKTTSPKKYFVRPNTG
Sbjct: 1   MTGVGENQLISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTG 60

Query: 61  VVQPWDSCIIR----AQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIE 116
           V+QPWDSCIIR    AQRE PPDMQCKDKFLLQSTIVP +TDVD+LP DTF KDSGKT+ 
Sbjct: 61  VIQPWDSCIIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLT 120

Query: 117 ECKLRVVYVSPSSAQGNLEDEGLVSATRSPDANSALQRLKDERDAAVRQTQLLQQDLDML 176
           ECKL+V Y++PS+ Q + E        +S +  S +QRLK+ERDAAV+QTQ LQ +L+ +
Sbjct: 121 ECKLKVSYITPSTTQRSSESGATNGDGQSSETISTIQRLKEERDAAVKQTQQLQHELETV 180

Query: 177 -KRRGQRKGVRGFSLMFAAFVGLIGIMVGLILNLLLSSP 214
            +RR QR    G SL  AA VGLIG+++G IL L L+SP
Sbjct: 181 RRRRNQRNSGNGLSLKLAAMVGLIGLIIGFILKLTLASP 219
May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function description
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function description
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function description
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 Back     alignment and function description
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2 Back     alignment and function description
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 Back     alignment and function description
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos taurus GN=VAPB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
449459000216 PREDICTED: vesicle-associated protein 2- 0.941 0.967 0.720 1e-85
255581982220 vesicle-associated membrane protein, put 0.896 0.904 0.766 4e-85
449458998220 PREDICTED: vesicle-associated protein 2- 0.959 0.968 0.724 7e-84
224071229222 predicted protein [Populus trichocarpa] 0.923 0.923 0.790 3e-79
297790937220 vesicle-associated membrane family prote 0.963 0.972 0.662 2e-78
15238034220 VAMP (vesicle-associated membrane protei 0.963 0.972 0.652 2e-77
356541222217 PREDICTED: vesicle-associated protein 2- 0.936 0.958 0.685 2e-74
356510792223 PREDICTED: vesicle-associated protein 2- 0.882 0.878 0.693 2e-73
89257550228 vesicle-associated membrane protein, put 0.959 0.934 0.622 4e-73
356563376222 PREDICTED: vesicle-associated protein 2- 0.878 0.878 0.688 1e-72
>gi|449459000|ref|XP_004147234.1| PREDICTED: vesicle-associated protein 2-1-like isoform 2 [Cucumis sativus] gi|449523728|ref|XP_004168875.1| PREDICTED: vesicle-associated protein 2-1-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 157/218 (72%), Positives = 176/218 (80%), Gaps = 9/218 (4%)

Query: 1   MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTG 60
           M+A GGN+LISV P+ELKF  EL+KQ FCDLKV NNTEHHVAFKVKTTSPKKYFVRPNTG
Sbjct: 1   MSAGGGNRLISVQPDELKFQIELDKQSFCDLKVANNTEHHVAFKVKTTSPKKYFVRPNTG 60

Query: 61  VVQPWDSCIIR----AQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIE 116
           VVQPWDSCIIR    A RE P DMQCKDKFLLQSTIVP NTDVD+LP D FNKDSGKTIE
Sbjct: 61  VVQPWDSCIIRVTLQAMREYPADMQCKDKFLLQSTIVPPNTDVDELPSDAFNKDSGKTIE 120

Query: 117 ECKLRVVYVSPSSAQGNLEDEGLVSATRSPDANSALQRLKDERDAAVRQTQLLQQDLDML 176
           ECKL+V+Y+SP+SA GN EDE       S  ++SA+ RL++ERD A+RQT  LQQ+LDM+
Sbjct: 121 ECKLKVIYISPTSALGNSEDE-----KNSSQSSSAVHRLREERDMAIRQTHQLQQELDMM 175

Query: 177 KRRGQRKGVRGFSLMFAAFVGLIGIMVGLILNLLLSSP 214
           KRR  RKG  GFS  FA FVG +GIM G +LNL LSSP
Sbjct: 176 KRRKFRKGDPGFSFTFAIFVGFVGIMAGFLLNLTLSSP 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255581982|ref|XP_002531789.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223528582|gb|EEF30603.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449458998|ref|XP_004147233.1| PREDICTED: vesicle-associated protein 2-1-like isoform 1 [Cucumis sativus] gi|449523726|ref|XP_004168874.1| PREDICTED: vesicle-associated protein 2-1-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224071229|ref|XP_002303378.1| predicted protein [Populus trichocarpa] gi|222840810|gb|EEE78357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297790937|ref|XP_002863353.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297309188|gb|EFH39612.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15238034|ref|NP_199529.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] gi|30695123|ref|NP_851144.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] gi|75180692|sp|Q9LVU1.1|VAP21_ARATH RecName: Full=Vesicle-associated protein 2-1; AltName: Full=Plant VAP homolog 21; Short=AtPVA21; AltName: Full=VAMP-associated protein 2-1 gi|8809600|dbj|BAA97151.1| VAMP (vesicle-associated membrane protein)-associated protein-like [Arabidopsis thaliana] gi|14334974|gb|AAK59664.1| putative VAMP (vesicle-associated membrane protein)-associated protein [Arabidopsis thaliana] gi|17104633|gb|AAL34205.1| putative VAMP-associated protein [Arabidopsis thaliana] gi|21553413|gb|AAM62506.1| VAMP (vesicle-associated membrane protein)-associated protein-like [Arabidopsis thaliana] gi|332008097|gb|AED95480.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] gi|332008098|gb|AED95481.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356541222|ref|XP_003539079.1| PREDICTED: vesicle-associated protein 2-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356510792|ref|XP_003524118.1| PREDICTED: vesicle-associated protein 2-1-like [Glycine max] Back     alignment and taxonomy information
>gi|89257550|gb|ABD65040.1| vesicle-associated membrane protein, putative [Brassica oleracea] Back     alignment and taxonomy information
>gi|356563376|ref|XP_003549940.1| PREDICTED: vesicle-associated protein 2-1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.882 0.890 0.626 2.1e-61
TAIR|locus:2126921239 AT4G00170 [Arabidopsis thalian 0.585 0.543 0.510 3.3e-31
TAIR|locus:2101766256 VAP27-1 "VAMP/SYNAPTOBREVIN-AS 0.545 0.472 0.52 2.3e-30
TAIR|locus:2025585 386 VAP27-2 "vamp/synaptobrevin-as 0.549 0.316 0.523 3.4e-29
TAIR|locus:2055557239 PVA12 "plant VAP homolog 12" [ 0.545 0.506 0.512 3.4e-29
TAIR|locus:2008231 637 AT1G51270 [Arabidopsis thalian 0.653 0.227 0.405 1.7e-25
TAIR|locus:2061461149 AT2G23830 [Arabidopsis thalian 0.536 0.798 0.430 4.8e-23
UNIPROTKB|G4N022285 MGG_06183 "Uncharacterized pro 0.639 0.498 0.307 1.4e-14
POMBASE|SPBC16G5.05c 383 SPBC16G5.05c "VAP family prote 0.477 0.276 0.358 4.7e-14
UNIPROTKB|Q5U511243 vapb "LOC495400 protein" [Xeno 0.648 0.592 0.313 2.7e-13
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 126/201 (62%), Positives = 147/201 (73%)

Query:     1 MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTG 60
             MT  G NQLIS+ P+ELKF+FELEKQ +CDLKV N TE++VAFKVKTTSPKKYFVRPNTG
Sbjct:     1 MTGVGENQLISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTG 60

Query:    61 VVQPWDSCIIR----AQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIE 116
             V+QPWDSCIIR    AQRE PPDMQCKDKFLLQSTIVP +TDVD+LP DTF KDSGKT+ 
Sbjct:    61 VIQPWDSCIIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLT 120

Query:   117 ECKLRVVYVSPSSAQGNLEDEGLVSATRSPDANSALQRLKDERDAAVRXXXXXXXXXXXX 176
             ECKL+V Y++PS+ Q + E        +S +  S +QRLK+ERDAAV+            
Sbjct:   121 ECKLKVSYITPSTTQRSSESGATNGDGQSSETISTIQRLKEERDAAVKQTQQLQHELETV 180

Query:   177 KRR-GQRKGVRGFSLMFAAFV 196
             +RR  QR    G SL  AA V
Sbjct:   181 RRRRNQRNSGNGLSLKLAAMV 201
GO:0005198 "structural molecule activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N022 MGG_06183 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPBC16G5.05c SPBC16G5.05c "VAP family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U511 vapb "LOC495400 protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LVU1VAP21_ARATHNo assigned EC number0.65290.96390.9727yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00030565
hypothetical protein (223 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 4e-27
COG5066242 COG5066, SCS2, VAMP-associated protein involved in 1e-14
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score = 99.7 bits (249), Expect = 4e-27
 Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 9   LISVHP-EELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDS 67
           L+++ P + L F    +KQG   L + N ++  VAFKVKTT+PK+Y VRPN G+++P +S
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGES 60

Query: 68  CIIR----AQRESPPDMQCKDKFLLQSTIVP-SNTDVDDLPPDTFNKDSG 112
             I        + P D + KDKF++Q T  P    D  +     +   + 
Sbjct: 61  VTITITRQPFDKEPGDPK-KDKFVIQYTEAPDDAKDAKEAFKRAWKNGAP 109

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 222
COG5066242 SCS2 VAMP-associated protein involved in inositol 99.94
KOG0439218 consensus VAMP-associated protein involved in inos 99.93
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.87
PF14874102 PapD-like: Flagellar-associated PapD-like 98.46
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 96.4
PRK10884206 SH3 domain-containing protein; Provisional 95.62
PRK09918230 putative fimbrial chaperone protein; Provisional 91.66
PRK10884206 SH3 domain-containing protein; Provisional 89.28
PRK09926246 putative chaperone protein EcpD; Provisional 86.88
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 86.22
PF0595794 DUF883: Bacterial protein of unknown function (DUF 85.89
PF1518885 CCDC-167: Coiled-coil domain-containing protein 16 85.58
PF14646426 MYCBPAP: MYCBP-associated protein family 85.27
PRK15249253 fimbrial chaperone protein StbB; Provisional 83.8
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 83.25
PRK15299227 fimbrial chaperone protein StiB; Provisional 82.0
PRK15295226 fimbrial assembly chaperone SthB; Provisional 80.94
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 80.78
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=99.94  E-value=2.7e-27  Score=196.88  Aligned_cols=115  Identities=37%  Similarity=0.596  Sum_probs=100.4

Q ss_pred             EEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEec--cc---cCCCCCCCCCC
Q 027513           10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIR--AQ---RESPPDMQCKD   84 (222)
Q Consensus        10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~--~~---~~~~~~~~~~d   84 (222)
                      |.|+| ++.|+.|++...++.+.|.|++.++|+||||||+|+.||||||.|+|+|++++.|.  +|   .+..+|.+|||
T Consensus         3 veisp-~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd   81 (242)
T COG5066           3 VEISP-QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD   81 (242)
T ss_pred             eEecC-ceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence            45666 45677799999999999999999999999999999999999999999999999998  45   45567899999


Q ss_pred             eEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEcC
Q 027513           85 KFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVS  126 (222)
Q Consensus        85 KFlVqs~~~~~~~~~~di~~~~f~k~~~~~i~e~kL~~~~~~  126 (222)
                      |||||++..+...+..|+. ++|....+.-|.+.||||+|..
T Consensus        82 KFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvyse  122 (242)
T COG5066          82 KFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYSE  122 (242)
T ss_pred             eeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEeec
Confidence            9999999999887777774 7666556777999999999984

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PRK09918 putative fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PRK09926 putative chaperone protein EcpD; Provisional Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD Back     alignment and domain information
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167 Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PRK15249 fimbrial chaperone protein StbB; Provisional Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PRK15299 fimbrial chaperone protein StiB; Provisional Back     alignment and domain information
>PRK15295 fimbrial assembly chaperone SthB; Provisional Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 3e-09
2rr3_A130 Solution Structure Of The Complex Between Human Vap 6e-09
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 2e-08
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 6e-08
1z9l_A128 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp 2e-07
1wic_A152 Solution Structure Of The Msp Domain Of Riken Cdna 3e-04
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure 
Iteration: 1

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 8   QLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWD 66
           Q++S+ P+ ELKF          +LK+ N T+ +V FKVKTT+P++Y VRPN+G++    
Sbjct: 8   QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGA 67
Query: 67  SCIIRAQRE---SPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVV 123
           S  +    +     P+ + K KF++QS   P  TD  D+    + +   + + + KLR V
Sbjct: 68  SINVSVMLQPFDYDPNEKSKHKFMVQSMFAP--TDTSDMEA-VWKEAKPEDLMDSKLRCV 124
Query: 124 Y 124
           +
Sbjct: 125 F 125
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128 Back     alignment and structure
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna 6030424e15 Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 5e-40
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 3e-33
2cri_A147 Vesicle-associated membrane protein-associated pro 4e-33
1z9l_A128 Vesicle-associated membrane protein-associated pro 1e-32
1m1s_A116 WR4; structural genomics, major sperm protein, bio 5e-29
1row_A109 SSP-19, MSP-domain protein like family member; bet 3e-20
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
 Score =  133 bits (336), Expect = 5e-40
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 2/125 (1%)

Query: 7   NQLISVHP-EELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPW 65
             L+ + P EEL F      +    + + N T++ VAFKV+TT+P+KY V+P+     P 
Sbjct: 16  GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPG 75

Query: 66  DSCIIRAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKD-SGKTIEECKLRVVY 124
            S  I         +  +D+FL+ +  +  ++         F K+     + E +LR   
Sbjct: 76  ASIDIIVSPHGGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHT 135

Query: 125 VSPSS 129
           V  S 
Sbjct: 136 VESSK 140
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
2cri_A147 Vesicle-associated membrane protein-associated pro 100.0
1z9l_A128 Vesicle-associated membrane protein-associated pro 100.0
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 100.0
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 99.97
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.95
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.94
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 98.35
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 98.01
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 97.82
3qis_A 366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 97.31
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 94.58
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 93.76
3c3g_A33 Alpha/beta peptide with the GCN4-PLI SIDE chain S 86.42
3q48_A257 Chaperone CUPB2; IG fold, periplasmic chaperone; 2 86.17
3m48_A33 General control protein GCN4; leucine zipper, synt 85.84
3c3f_A34 Alpha/beta peptide with the GCN4-PLI SIDE chain S 84.51
2oxj_A34 Hybrid alpha/beta peptide based on the GCN4-P1 Se 83.66
1uo4_A34 General control protein GCN4; four helix bundle, c 83.32
2co7_B221 SAFB chaperone, putative fimbriae assembly chapero 81.18
2xg5_A218 PAPD, chaperone protein PAPD; chaperone, chaperone 81.13
2bni_A34 General control protein GCN4; four helix bundle, a 81.0
1kd8_B36 GABH BLL, GCN4 acid base heterodimer base-D12LA16L 80.95
2wq1_A33 General control protein GCN4; TAA, nucleus, coiled 80.6
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=9.3e-35  Score=232.89  Aligned_cols=124  Identities=30%  Similarity=0.561  Sum_probs=109.3

Q ss_pred             CCccEEEecC-eeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEec--ccc-CCCCCCC
Q 027513            6 GNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIR--AQR-ESPPDMQ   81 (222)
Q Consensus         6 ~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~--~~~-~~~~~~~   81 (222)
                      ..++|.|+|. +|.|.+++++.+++.|+|+|+++++||||||||+|++|||||++|+|+||++++|.  ++. +.+++++
T Consensus        11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~~p~~~   90 (147)
T 2cri_A           11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDYDPNEK   90 (147)
T ss_dssp             CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCCCTTCC
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcCCcccc
Confidence            3579999997 99999999999999999999999999999999999999999999999999999998  453 4456678


Q ss_pred             CCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEcCCCCCCC
Q 027513           82 CKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSAQG  132 (222)
Q Consensus        82 ~~dKFlVqs~~~~~~~~~~di~~~~f~k~~~~~i~e~kL~~~~~~p~~~~~  132 (222)
                      |+|||+||++.++++.  .++ .++|++..+..++++||||+|+.|.+++.
T Consensus        91 ~kDKFlVqs~~~~~~~--~d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~~~  138 (147)
T 2cri_A           91 SKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFEMPNENDK  138 (147)
T ss_dssp             SCCCEEEEEEECCTTC--CCH-HHHHHHSCTTTCEEEEEEEEEECSCCSSC
T ss_pred             CCCEEEEEEEEcCCCc--ccH-HHHhhcCCCCceEEEEEEEEEecCCCCcc
Confidence            9999999999999864  355 47777777889999999999999887643
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A* Back     alignment and structure
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A Back     alignment and structure
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1 Back     alignment and structure
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A* Back     alignment and structure
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A* Back     alignment and structure
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Back     alignment and structure
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Back     alignment and structure
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ... Back     alignment and structure
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B Back     alignment and structure
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 222
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 7e-38
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 5e-32
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 5e-24
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 7e-24
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (319), Expect = 7e-38
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 8   QLISVHP-EELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWD 66
            L+ + P EEL F      +    + + N T++ VAFKV+TT+P+KY V+P+     P  
Sbjct: 17  PLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGA 76

Query: 67  SCIIRAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKD-SGKTIEECKLRVVYV 125
           S  I         +  +D+FL+ +  +  ++         F K+     + E +LR   V
Sbjct: 77  SIDIIVSPHGGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTV 136

Query: 126 SPS 128
             S
Sbjct: 137 ESS 139
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 99.97
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 99.97
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.91
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.9
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 93.8
d1p5va1141 Chaperone protein Caf1m {Yersinia pestis [TaxId: 6 93.48
d2j2za1124 Pilus chaperone PapD, N-domain {Escherichia coli [ 85.56
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9e-33  Score=220.65  Aligned_cols=124  Identities=25%  Similarity=0.340  Sum_probs=105.8

Q ss_pred             CCccEEEecC-eeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEeccccCCCCCCCCCC
Q 027513            6 GNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRAQRESPPDMQCKD   84 (222)
Q Consensus         6 ~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~~~~~~~~~~~~~d   84 (222)
                      .+++|.|+|. +|+|.+++++.++|.|+|+|+++++||||||||+|++|+|||++|+|+||++++|.++........++|
T Consensus        15 ~~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~~~~~~~~kd   94 (152)
T d1wica_          15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLTVSAQD   94 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSCCCSSC
T ss_pred             CCCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEECCCCcccCCC
Confidence            3579999997 899999999999999999999999999999999999999999999999999999996543344567899


Q ss_pred             eEEEEEEecCCCCCC--CCCCCCcccccCCCcceEEEeEEEEcCCCCC
Q 027513           85 KFLLQSTIVPSNTDV--DDLPPDTFNKDSGKTIEECKLRVVYVSPSSA  130 (222)
Q Consensus        85 KFlVqs~~~~~~~~~--~di~~~~f~k~~~~~i~e~kL~~~~~~p~~~  130 (222)
                      ||+|+++.+++..+.  +|+. ++|+...+..++++||||+|+.+..+
T Consensus        95 KFli~~~~v~~~~~~~~~d~~-~~wk~~~~~~i~~~kLkv~~~~~~~p  141 (152)
T d1wica_          95 RFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKP  141 (152)
T ss_dssp             CEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSS
T ss_pred             cEEEEEEEeCCCCCCCccCHH-HHhhcCCcCcEEEEEEEEEEeCCCCC
Confidence            999999999876432  2442 44444568889999999999998876
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure