Citrus Sinensis ID: 027519

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MAAASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTHKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDSLKSVQ
Secondary Structure (PSIPRED)
ccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHccccccccccccEEEEEEEccEEEEEccccEEEEEEcccccccccEEEcEEEEEEccccEEEcccEEcccEEEEEEEEcccccEEEEEEcccccccccccccccccEEEEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccEEEEEEEcccEEEEEcccEEEEEEEcccccccEEEEEEEEEEEccccEEEcccEEcccEEEEEEEEcccccEEEEEEEcccccHHHccccccccEEEEEEEEEEEcccccccHHcHHHcc
Coil and Loop (DISEMBL)
MAAASSCATLALCSSLTshckiscqnpnphpqlslsksklcsfpspklytrptfsfthkfsqtepppvsepevepeaaleaeaepttEVVESaakeepkrEEIFAVVMIGsrqyivfpgrfiytqrlkganvndkIILNKVLLVgtktttyigkpvvTNAAVHAVVEEQGLNPKVIVFKYkkkknyrrnighrqpntriritgitgyqdypavtldslksvq
Flexible Loop (DISEMBL)
MAAASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTHKFSQTEPPPVSEPEVEPEAAleaeaepttevvesaakeepkreEIFAVVMIGSRQYIVFPGRFIYTQRlkganvndkiilNKVLLVGTKTTTYIGKPVVTNAAVHAvveeqglnpkvivfkykkkknyrrnighrqpntriritgitgyqdypavtldslksvq
Low Complexity Region (SEG)
MaaasscatlalcssltsHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTHKFSQTepppvsepevepeaaleaeaepttevvesaaKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPkvivfkykkkknyrrniGHRQPNTRIRITGITGYQDYPAVTLDSLKSVQ
Disordered region (IsUnstruct)
*******ATLALCSSLTSHCKIS******************************************************************************EIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTL*******
Disordered Region (DISOPRED)
***********LCSSLT*************************************************************************************IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGIT*****************
Disordered Region (DISEMBL)
*********LALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTH****************************************KREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDSLKSVQ
Disordered Region (DISPRO)
**********ALCSSLTSHCKISC***************************************************************EVVESAAKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYR*NIGHRQPNTRIRITGITGYQDYPAVTLDSL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTHKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDSLKSVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
P51412	220	50S ribosomal protein L21	yes	no	0.900	0.909	0.594	3e-56
P24613	256	50S ribosomal protein L21	N/A	no	0.531	0.460	0.855	4e-46
Q8L9A0	270	50S ribosomal protein L21	no	no	0.486	0.4	0.518	9e-22
Q54IF0	172	Probable 39S ribosomal pr	yes	no	0.603	0.779	0.422	5e-20
B8E0B4	105	50S ribosomal protein L21	yes	no	0.459	0.971	0.495	2e-18
A5N6J9	103	50S ribosomal protein L21	yes	no	0.454	0.980	0.470	1e-17
B9E018	103	50S ribosomal protein L21	yes	no	0.454	0.980	0.470	1e-17
Q2RL02	104	50S ribosomal protein L21	yes	no	0.454	0.971	0.460	1e-17
B5YEQ3	105	50S ribosomal protein L21	yes	no	0.459	0.971	0.466	1e-17
A6LQR6	103	50S ribosomal protein L21	yes	no	0.454	0.980	0.480	2e-17

>sp|P51412|RK21_ARATH 50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 SV=1

 Score =  218 bits (555), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/217 (59%), Positives = 158/217 (72%), Gaps = 17/217 (7%)

Query: 4   ASSCATLALCSSLTSHCKISCQNPN------PHPQLSLSKSKLCSFPSPKLYT--RPTFS 55
           ASS ATL+LCS+ ++HC ++ +  +        P L+L+K  L  F SP   +  R  F+
Sbjct: 2   ASSSATLSLCSTFSAHCNVNSRRSSTILCSLSKPSLNLAK-PLTGFLSPSTASTSRTAFT 60

Query: 56  FTHKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYI 115
              KF++      S  E EPE   + EA   ++V E   +E+ KREEIFAV+M+G RQYI
Sbjct: 61  VAPKFAE------SVVEAEPETT-DIEAVVVSDVSE-VTEEKAKREEIFAVIMVGGRQYI 112

Query: 116 VFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKV 175
           VFPGR++YTQRLK ANV+D+I+LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGLN KV
Sbjct: 113 VFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKV 172

Query: 176 IVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPA 212
           +VFKYK KK YRRNIGHRQPNTRIRITGITGY++YPA
Sbjct: 173 VVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYPA 209

This protein binds to 23S ribosomal RNA in the presence of protein L20.
Arabidopsis thaliana (taxid: 3702)

>sp|P24613|RK21_SPIOL 50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea GN=RPL21 PE=1 SV=1

 Score =  184 bits (467), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 101/118 (85%), Positives = 109/118 (92%)

Query: 98  PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVV 157
           P REEIFAVV+IGSRQYIV PGR+IYTQRLKGA VNDKI+LNKVLLVGTK +TYIG P+V
Sbjct: 118 PPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIV 177

Query: 158 TNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTL 215
           TNAAVHAVVEEQ L+ KVIVFKYKKKKNYRRNIGHRQP TRI+ITGITGY+DYPA TL
Sbjct: 178 TNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTL 235

This protein binds to 23S ribosomal RNA in the presence of protein L20.

Spinacia oleracea (taxid: 3562)

>sp|Q8L9A0|RM21_ARATH 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1

 Score =  103 bits (257), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 80/108 (74%)

Query: 101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNA 160
           E +FA+V IGS Q+ V  G  I+T++LK  ++NDK+ L KVLL+G+ + T IG+P++ +A
Sbjct: 138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDA 197

Query: 161 AVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQ 208
            VHAVVEE  L+ KV++FK K++KNYRR  GHRQ  T++RIT I G +
Sbjct: 198 TVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245

This protein binds to 23S ribosomal RNA in the presence of protein L20.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54IF0|RM21_DICDI Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium discoideum GN=mrpl21 PE=3 SV=1

 Score = 97.8 bits (242), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 79/135 (58%), Gaps = 1/135 (0%)

Query: 80  EAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILN 139
           EA A  + E   S  +  P  ++ FAVV I  +QY V  G  I T +++  +V + I+L+
Sbjct: 38  EAVAVTSEESYNSKNQFTPIGKDSFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLD 96

Query: 140 KVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRI 199
           KVLLVGTK  T IGKP+++N  VHA +EEQ     V +FK+K +KNY+R  G +   T I
Sbjct: 97  KVLLVGTKNETIIGKPIISNFKVHAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYI 156

Query: 200 RITGITGYQDYPAVT 214
           RI GI   Q+    T
Sbjct: 157 RIGGIIKGQETTTTT 171

Dictyostelium discoideum (taxid: 44689)

>sp|B8E0B4|RL21_DICTD 50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplU PE=3 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           +F VV  G +QY V  G  +  ++LK ANV D+++L+KVLLVG +    IG+P V  A V
Sbjct: 1   MFVVVETGGKQYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKV 59

Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGIT 205
            A V  Q   PKVIVFK+K+KK+YRR  GHRQP T++ I  I 
Sbjct: 60  IAKVVRQDKYPKVIVFKFKRKKHYRRKYGHRQPYTQLSIKEIV 102

This protein binds to 23S rRNA in the presence of protein L20.

Dictyoglomus turgidum (strain Z-1310 / DSM 6724) (taxid: 515635)

>sp|A5N6J9|RL21_CLOK5 50S ribosomal protein L21 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplU PE=3 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 1/102 (0%)

Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           ++AVV  G +QY V  G  IY ++L+ A V+  I L+KVL++       +GKPVV  A V
Sbjct: 1   MYAVVATGGKQYKVSEGDIIYVEKLE-AEVDSTIELDKVLMINKDEGLVVGKPVVEGAKV 59

Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGI 204
            A V +QG   K+IVFKYK KK+YR+  GHRQP T+++I  I
Sbjct: 60  KAKVLKQGKAKKIIVFKYKPKKDYRKKQGHRQPYTKLQIEKI 101

This protein binds to 23S rRNA in the presence of protein L20.

Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) (taxid: 431943)

>sp|B9E018|RL21_CLOK1 50S ribosomal protein L21 OS=Clostridium kluyveri (strain NBRC 12016) GN=rplU PE=3 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 1/102 (0%)

Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           ++AVV  G +QY V  G  IY ++L+ A V+  I L+KVL++       +GKPVV  A V
Sbjct: 1   MYAVVATGGKQYKVSEGDIIYVEKLE-AEVDSTIELDKVLMINKDEGLVVGKPVVEGAKV 59

Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGI 204
            A V +QG   K+IVFKYK KK+YR+  GHRQP T+++I  I
Sbjct: 60  KAKVLKQGKAKKIIVFKYKPKKDYRKKQGHRQPYTKLQIEKI 101

This protein binds to 23S rRNA in the presence of protein L20.

Clostridium kluyveri (strain NBRC 12016) (taxid: 583346)

>sp|Q2RL02|RL21_MOOTA 50S ribosomal protein L21 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplU PE=3 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 65/102 (63%), Gaps = 1/102 (0%)

Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           ++A++M G +QY V  G  +  ++L  A V +K++L+KVL VG      +G P V  A V
Sbjct: 1   MYAIIMTGGKQYRVSEGDTLRVEKLP-AEVGEKVVLDKVLAVGEGADLKVGNPYVEGAKV 59

Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGI 204
            A V+ Q   PK+IVFKYK KKNYRR  GHRQP T+++I  I
Sbjct: 60  TASVQAQDKAPKIIVFKYKPKKNYRRKQGHRQPYTQLQIEKI 101

This protein binds to 23S rRNA in the presence of protein L20.

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

>sp|B5YEQ3|RL21_DICT6 50S ribosomal protein L21 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplU PE=3 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           +F VV  G +QY +  G  +  ++L+ ANV D+++L+KVLLVG      IG+P V  A V
Sbjct: 1   MFVVVETGGKQYKLSVGSTVRVEKLQ-ANVGDEVVLDKVLLVGKDDEVLIGQPYVEGAKV 59

Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGIT 205
            A V +Q   PKVIVFK+K+KK+YRR  GHRQP T++ +  I 
Sbjct: 60  IAEVVKQDKYPKVIVFKFKRKKHYRRKYGHRQPYTQLSVKEIV 102

This protein binds to 23S rRNA in the presence of protein L20.

Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) (taxid: 309799)

>sp|A6LQR6|RL21_CLOB8 50S ribosomal protein L21 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplU PE=3 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 1/102 (0%)

Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           ++AV+  G +QY V  G  IY ++L  A+V+  + LN+VL VGT+    +G PVV  A V
Sbjct: 1   MYAVLATGGKQYRVQEGDVIYVEKLN-ADVDSTVELNEVLAVGTEEGIKVGAPVVEGAKV 59

Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGI 204
            A V  QG   KV+VFKYK KK+YRR  GHRQP T++ I  I
Sbjct: 60  VAKVAAQGKAKKVVVFKYKSKKDYRRKNGHRQPYTKLVIEKI 101

This protein binds to 23S rRNA in the presence of protein L20.

Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (taxid: 290402)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
118486114	225	unknown [Populus trichocarpa]	0.963	0.951	0.662	1e-72
224145182	206	predicted protein [Populus trichocarpa]	0.887	0.956	0.632	2e-69
255571748	214	50S ribosomal protein L21, putative [Ric	0.927	0.962	0.678	9e-66
224135915	227	predicted protein [Populus trichocarpa]	0.959	0.938	0.658	3e-59
225454186	209	PREDICTED: 50S ribosomal protein L21, ch	0.905	0.961	0.662	2e-57
297846634	215	50S ribosomal protein L21, chloroplast [	0.891	0.920	0.584	1e-54
15219695	220	50S ribosomal protein L21 [Arabidopsis t	0.900	0.909	0.594	1e-54
388502066	216	unknown [Lotus japonicus]	0.945	0.972	0.513	1e-49
449463382	206	PREDICTED: 50S ribosomal protein L21, ch	0.540	0.582	0.9	3e-49
388514731	216	unknown [Lotus japonicus]	0.945	0.972	0.508	2e-48

>gi|118486114|gb|ABK94900.1| unknown [Populus trichocarpa]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 151/228 (66%), Positives = 173/228 (75%), Gaps = 14/228 (6%)

Query: 1   MAAASSCATLALCSSLTSHCKIS-CQNPNPHPQLSLSKSKLCSFP-------SPKLYT-R 51
           MAA+SS A +ALCSSLT+ CKIS  QNP     L LSK    SF        SP +++ R
Sbjct: 1   MAASSSTALMALCSSLTTQCKISKSQNPPLSKTLCLSKPNFGSFSNTTKKLSSPLIFSKR 60

Query: 52  PTFSFTHKFSQTEPPPVSEPEVEPEAAL-EAEAEPT-TEVVESAAKEEPKREEIFAVVMI 109
           PTF    K S++E P V   E E E  + EA  EP  T++VE A +E  KREEIFAVVM+
Sbjct: 61  PTFFARPKVSESEAPVV---EAETEVPVSEANPEPAATQIVEVAKEEPTKREEIFAVVMV 117

Query: 110 GSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQ 169
           GSRQYIV PGR++Y QRLKGANVNDKI+LNKVLLVGT+T+ YIGKPVVTNA+VHAVVEEQ
Sbjct: 118 GSRQYIVIPGRWLYVQRLKGANVNDKIVLNKVLLVGTRTSAYIGKPVVTNASVHAVVEEQ 177

Query: 170 GLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDS 217
           GL+ K IVFKYK+KKNYRRNIGHRQPNTRIRITGITGYQD+P  TLDS
Sbjct: 178 GLDAKKIVFKYKRKKNYRRNIGHRQPNTRIRITGITGYQDFPVSTLDS 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145182|ref|XP_002325555.1| predicted protein [Populus trichocarpa] gi|222862430|gb|EEE99936.1| predicted protein [Populus trichocarpa]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/226 (63%), Positives = 164/226 (72%), Gaps = 29/226 (12%)

Query: 1   MAAASSCATLALCSSLTSHCKIS-CQNPNPHPQLSLSKSKLCSFP-------SPKLYT-R 51
           MAA+SS A +ALCSSLT+ CKIS  QNP     L LSK    SF        SP +++ R
Sbjct: 1   MAASSSTALMALCSSLTTQCKISKSQNPPLSKTLCLSKPNFGSFSNTTKKLSSPLIFSKR 60

Query: 52  PTFSFTHKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGS 111
           PTF              + P+  PE A        T++VE A +E  KREEIFAVVM+GS
Sbjct: 61  PTF-------------FARPKANPEPA-------ATQIVEVAKEEPTKREEIFAVVMVGS 100

Query: 112 RQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGL 171
           RQYIV PGR++Y QRLKGANVNDKI+LNKVLLVGT+T+ YIGKPVVTNA+VHAVVEEQGL
Sbjct: 101 RQYIVIPGRWLYVQRLKGANVNDKIVLNKVLLVGTRTSAYIGKPVVTNASVHAVVEEQGL 160

Query: 172 NPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDS 217
           + K IVFKYK+KKNYRRNIGHRQPNTRIRITGITGYQD+P  TLDS
Sbjct: 161 DAKKIVFKYKRKKNYRRNIGHRQPNTRIRITGITGYQDFPVSTLDS 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571748|ref|XP_002526817.1| 50S ribosomal protein L21, putative [Ricinus communis] gi|223533821|gb|EEF35552.1| 50S ribosomal protein L21, putative [Ricinus communis]

 Score =  255 bits (651), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 150/221 (67%), Positives = 167/221 (75%), Gaps = 15/221 (6%)

Query: 4   ASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFP-------SPKLYTRPTFSF 56
           A++C TL+LCSS T+ C IS    NP+    +SK+   S P       S KL TRP+F  
Sbjct: 2   ATTCTTLSLCSSFTAQCTISNHKQNPN---FISKTHFSSNPKIGPFTKSHKLTTRPSFLP 58

Query: 57  THKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYIV 116
             K S+++ P +   EVE   A E + EP   V    AKEE KREEIFAVVM+G RQYIV
Sbjct: 59  ILKSSESDAPVL---EVEDANAPELQPEPAPFV--EVAKEETKREEIFAVVMVGGRQYIV 113

Query: 117 FPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVI 176
            PGRFIY QRLKGANVNDK+ LNKVLLVGT+TTTYIGKPVVTNA VHAVVEEQGLNPKV+
Sbjct: 114 IPGRFIYVQRLKGANVNDKVALNKVLLVGTRTTTYIGKPVVTNAVVHAVVEEQGLNPKVV 173

Query: 177 VFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDS 217
           VFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDS
Sbjct: 174 VFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDS 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135915|ref|XP_002327335.1| predicted protein [Populus trichocarpa] gi|222835705|gb|EEE74140.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 152/231 (65%), Positives = 172/231 (74%), Gaps = 18/231 (7%)

Query: 1   MAAASSCATLALCSSLTSHCKIS-CQNPNPHPQLSLSKSKLCSFP--------SPKLYT- 50
           MA +SS   +ALCSSLT+ CKIS  QNP     L LSK    SF         S  +++ 
Sbjct: 1   MATSSSTTLVALCSSLTTQCKISNAQNPPLSKSLCLSKPNSGSFSKTTQNLSSSSLIFSK 60

Query: 51  RPTFSFTH--KFSQTEPPPVSEPEVEPEAAL-EAEAEPT-TEVVESAAKEEPKREEIFAV 106
           RPTF F +  KFS++E   V   E EPE  + EA  EP  T++VE A +E PKREEIFAV
Sbjct: 61  RPTF-FANPPKFSESEALVV---EAEPEVPVSEANPEPAATQMVEVAKEEPPKREEIFAV 116

Query: 107 VMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVV 166
           VM+GSRQYIV PGR++Y QRLKGANVNDK+ LNKVLLVGT+T+ YIGKPVVTNA VHAVV
Sbjct: 117 VMVGSRQYIVIPGRWLYVQRLKGANVNDKVNLNKVLLVGTRTSAYIGKPVVTNATVHAVV 176

Query: 167 EEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDS 217
           EEQGL+ K IVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYP  TLDS
Sbjct: 177 EEQGLDAKKIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPVSTLDS 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454186|ref|XP_002272295.1| PREDICTED: 50S ribosomal protein L21, chloroplastic [Vitis vinifera] gi|297745266|emb|CBI40346.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 145/219 (66%), Positives = 159/219 (72%), Gaps = 18/219 (8%)

Query: 6   SCATLAL-CSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTHKFSQTE 64
           + ATLA   SSLT    +S ++ +  P+ +LS S    F SP   T          S   
Sbjct: 2   ASATLAFFSSSLTPTATLSLKHKSSAPKKTLSFSNF-GFLSPHSLT---------LSSRR 51

Query: 65  PP---PVSEPEVEPEAALEAEAEPTTE---VVESAAKEEPKREEIFAVVMIGSRQYIVFP 118
           PP   P S  E EP       +EP +E   VVE    E PKREEIFAVVMIGSRQYIVFP
Sbjct: 52  PPSPLPKSS-EFEPSVIEVESSEPNSEALQVVEEPPPELPKREEIFAVVMIGSRQYIVFP 110

Query: 119 GRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVF 178
           GR+IYTQRLKGA+VNDKIILN+VLLVGTKT+TYIGKPVV NAAVHAVVEEQGLNPKV+VF
Sbjct: 111 GRYIYTQRLKGADVNDKIILNRVLLVGTKTSTYIGKPVVPNAAVHAVVEEQGLNPKVMVF 170

Query: 179 KYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDS 217
           KYKKKKNYRRNIGHRQPNTRIRITGITGYQD PAVTLDS
Sbjct: 171 KYKKKKNYRRNIGHRQPNTRIRITGITGYQDSPAVTLDS 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846634|ref|XP_002891198.1| 50S ribosomal protein L21, chloroplast [Arabidopsis lyrata subsp. lyrata] gi|297337040|gb|EFH67457.1| 50S ribosomal protein L21, chloroplast [Arabidopsis lyrata subsp. lyrata]

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/219 (58%), Positives = 156/219 (71%), Gaps = 21/219 (9%)

Query: 4   ASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKL--------YTRPTFS 55
           ASS ATL+LCS+ ++HC ++ +          S + LCS   P L        +  P+ +
Sbjct: 2   ASSSATLSLCSTFSAHCNVTSRR---------SSTILCSLSKPSLNLAKPVSGFLSPSTA 52

Query: 56  FTHKFSQTEPPPVSEP--EVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQ 113
            T + + T  P  +E   E EPE   + EA   ++V E   +E+ KREEIFAVVM+G RQ
Sbjct: 53  STSRTAFTVAPKFAESVVEAEPETT-DIEAVVVSDVSE-VTEEKAKREEIFAVVMVGGRQ 110

Query: 114 YIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNP 173
           YIVFPGR++YTQRLK ANV+D+I+LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGLN 
Sbjct: 111 YIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVENQGLND 170

Query: 174 KVIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPA 212
           KV+VFKYK KK YRRNIGHRQPNTRIRITGITGY++YPA
Sbjct: 171 KVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYPA 209

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219695|ref|NP_174808.1| 50S ribosomal protein L21 [Arabidopsis thaliana] gi|1710424|sp|P51412.1|RK21_ARATH RecName: Full=50S ribosomal protein L21, chloroplastic; AltName: Full=CL21; Flags: Precursor gi|8778379|gb|AAF79387.1|AC007887_46 F15O4.7 [Arabidopsis thaliana] gi|16226899|gb|AAL16293.1|AF428363_1 At1g35680/F15O4_7 [Arabidopsis thaliana] gi|1149573|emb|CAA89887.1| chloroplast ribosomal large subunit protein L21 [Arabidopsis thaliana] gi|14456036|emb|CAB59360.2| chloroplast ribosomal protein L21 [Arabidopsis thaliana] gi|16648685|gb|AAL25535.1| At1g35680/F15O4_7 [Arabidopsis thaliana] gi|21436001|gb|AAM51578.1| At1g35680/F15O4_7 [Arabidopsis thaliana] gi|332193702|gb|AEE31823.1| 50S ribosomal protein L21 [Arabidopsis thaliana]

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/217 (59%), Positives = 158/217 (72%), Gaps = 17/217 (7%)

Query: 4   ASSCATLALCSSLTSHCKISCQNPN------PHPQLSLSKSKLCSFPSPKLYT--RPTFS 55
           ASS ATL+LCS+ ++HC ++ +  +        P L+L+K  L  F SP   +  R  F+
Sbjct: 2   ASSSATLSLCSTFSAHCNVNSRRSSTILCSLSKPSLNLAK-PLTGFLSPSTASTSRTAFT 60

Query: 56  FTHKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYI 115
              KF++      S  E EPE   + EA   ++V E   +E+ KREEIFAV+M+G RQYI
Sbjct: 61  VAPKFAE------SVVEAEPETT-DIEAVVVSDVSE-VTEEKAKREEIFAVIMVGGRQYI 112

Query: 116 VFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKV 175
           VFPGR++YTQRLK ANV+D+I+LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGLN KV
Sbjct: 113 VFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKV 172

Query: 176 IVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPA 212
           +VFKYK KK YRRNIGHRQPNTRIRITGITGY++YPA
Sbjct: 173 VVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYPA 209

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502066|gb|AFK39099.1| unknown [Lotus japonicus]

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 145/224 (64%), Gaps = 14/224 (6%)

Query: 1   MAAASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSP--KLYTRPTFSFTH 58
           MA+A++  +  LC+S  +HC IS  +     +   S+S    FPS   KL  +P  +FT 
Sbjct: 1   MASATAIVS-TLCASFGTHCTISSTS-----KPLFSQSSTSRFPSHSNKLSLQPP-TFTQ 53

Query: 59  KFSQTEPPPVSEPEV-EPEAALEAEAEPTTEVVESAAKEEPKRE-EIFAVVMIGSRQYIV 116
           +F     P VSE  V EPE  +     P  E  E    + P  E  +FAVVM+G RQYIV
Sbjct: 54  RFPLLPLPKVSESAVAEPEIDVTT---PQPEAGEIVPAQPPSWEPGLFAVVMVGGRQYIV 110

Query: 117 FPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVI 176
            PGR+I  QRLKGA  NDKI L KVLLVGT T+ YIGKP+V+NA V+A VEEQG +PKVI
Sbjct: 111 HPGRWIVVQRLKGAKANDKIALQKVLLVGTDTSCYIGKPIVSNAVVYATVEEQGFDPKVI 170

Query: 177 VFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDSLKS 220
           VFKYK+KK YRR  GH+QP+TR+RI  I GY++YP VT+D +KS
Sbjct: 171 VFKYKRKKQYRRTYGHKQPHTRLRINSIMGYENYPKVTMDDVKS 214

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463382|ref|XP_004149413.1| PREDICTED: 50S ribosomal protein L21, chloroplastic-like [Cucumis sativus] gi|449496845|ref|XP_004160241.1| PREDICTED: 50S ribosomal protein L21, chloroplastic-like [Cucumis sativus]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 108/120 (90%), Positives = 114/120 (95%)

Query: 98  PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVV 157
           P REEIFAVVMIGSRQYIVFPGR+I+TQRLKGA+VNDKI LNKVLLVGTKT TYIGKPVV
Sbjct: 87  PNREEIFAVVMIGSRQYIVFPGRYIHTQRLKGADVNDKITLNKVLLVGTKTQTYIGKPVV 146

Query: 158 TNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDS 217
           TNAAVHAVVEEQGL+ KVIVFKYKKKKNYRRNIGHRQPNTRIRIT I+GYQDYPA TL+S
Sbjct: 147 TNAAVHAVVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPATTLES 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514731|gb|AFK45427.1| unknown [Lotus japonicus]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 145/224 (64%), Gaps = 14/224 (6%)

Query: 1   MAAASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSP--KLYTRPTFSFTH 58
           MA+A++  +  LC+S  +HC IS  +     +   S+S    FPS   KL  +P  +FT 
Sbjct: 1   MASATAIVS-TLCASFGTHCTISSTS-----KPLFSQSSHSRFPSHSNKLSLQPP-TFTL 53

Query: 59  KFSQTEPPPVSEPEVEPEAALEAEAE-PTTEVVESAAKEEPKRE-EIFAVVMIGSRQYIV 116
           +F     P VSE  V   A LE +   P  E  E    + P  E  +FAVVM+G RQYIV
Sbjct: 54  RFPLLPFPKVSESAV---AELETDVTTPQPEAGEIVPAQPPSWEPGLFAVVMVGGRQYIV 110

Query: 117 FPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVI 176
            PGR+I  QRLKGA  NDKI L KVLLVGT T+ YIGKP+V+N  V+A VEEQG +PKVI
Sbjct: 111 HPGRWIVVQRLKGAKANDKIALQKVLLVGTDTSCYIGKPIVSNTVVYATVEEQGFDPKVI 170

Query: 177 VFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDSLKS 220
           VFKYK+KK+YRR  GH+QP+TR+RI  I GY++YP VT+D +KS
Sbjct: 171 VFKYKRKKHYRRTYGHKQPHTRLRINSIMGYENYPKVTMDDVKS 214

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2014711	220	RPL21C "chloroplast ribosomal	0.864	0.872	0.482	3.3e-40
TAIR|locus:2126699	270	NFD1 "NUCLEAR FUSION DEFECTIVE	0.486	0.4	0.425	3.6e-18
DICTYBASE|DDB_G0288799	172	mrpl21 "ribosomal protein L21,	0.522	0.674	0.376	1.6e-13
TIGR_CMR|GSU_3236	102	GSU_3236 "ribosomal protein L2	0.450	0.980	0.343	1.1e-09
TIGR_CMR|BA_4676	102	BA_4676 "ribosomal protein L21	0.450	0.980	0.303	1.1e-07
WB|WBGene00023422	171	mrpl-21 [Caenorhabditis elegan	0.346	0.450	0.387	1.4e-07
TIGR_CMR|CBU_0385	115	CBU_0385 "ribosomal protein L2	0.454	0.878	0.294	3.8e-07
FB|FBgn0036853	201	mRpL21 "mitochondrial ribosoma	0.490	0.542	0.279	4.9e-07
TIGR_CMR|CPS_4512	103	CPS_4512 "ribosomal protein L2	0.463	1.0	0.269	1.1e-05
TIGR_CMR|DET_1325	132	DET_1325 "ribosomal protein L2	0.463	0.780	0.314	1.9e-05

TAIR|locus:2014711 RPL21C "chloroplast ribosomal protein L21" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 94/195 (48%), Positives = 115/195 (58%)

Query:    19 HCKISCQNPNPHPQLSLSKSKLCSFPSPKL-YTRPTFSFTHKFSQTXXXXXXXXXXXXXX 77
             HC ++ +  +     SLSK  L +   P   +  P+ + T + + T              
Sbjct:    17 HCNVNSRRSSTI-LCSLSKPSL-NLAKPLTGFLSPSTASTSRTAFTVAPKFAESVVEAEP 74

Query:    78 XXXXXXXXXXXXXXXXXKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKII 137
                              +E+ KREEIFAV+M+G RQYIVFPGR++YTQRLK ANV+D+I+
Sbjct:    75 ETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIV 134

Query:   138 LNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNT 197
             LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGLN                  GHRQPNT
Sbjct:   135 LNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNT 194

Query:   198 RIRITGITGYQDYPA 212
             RIRITGITGY++YPA
Sbjct:   195 RIRITGITGYEEYPA 209

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2126699 NFD1 "NUCLEAR FUSION DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 46/108 (42%), Positives = 66/108 (61%)

Query:   101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNA 160
             E +FA+V IGS Q+ V  G  I+T++LK  ++NDK+ L KVLL+G+ + T IG+P++ +A
Sbjct:   138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDA 197

Query:   161 AVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGITGYQ 208
              VHAVVEE  L+                  GHRQ  T++RIT I G +
Sbjct:   198 TVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0000741 "karyogamy" evidence=RCA;IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0001510 "RNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

DICTYBASE|DDB_G0288799 mrpl21 "ribosomal protein L21, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 44/117 (37%), Positives = 60/117 (51%)

Query:    98 PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVV 157
             P  ++ FAVV I  +QY V  G  I T +++  +V + I+L+KVLLVGTK  T IGKP++
Sbjct:    56 PIGKDSFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLDKVLLVGTKNETIIGKPII 114

Query:   158 TNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGITGYQDYPAVT 214
             +N  VHA +EEQ                     G +   T IRI GI   Q+    T
Sbjct:   115 SNFKVHAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIRIGGIIKGQETTTTT 171

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|GSU_3236 GSU_3236 "ribosomal protein L21" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 35/102 (34%), Positives = 54/102 (52%)

Query:   103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
             ++AV+  G +QY V  G F+  ++L+GA V D + L  VL+VG +T   IG P+V +A+V
Sbjct:     1 MYAVIRTGGKQYKVSEGDFLKVEKLEGA-VGDTVELKDVLMVGGETVA-IGTPLVPSASV 58

Query:   163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI 204
                + +QG +                  GHRQP T ++I  I
Sbjct:    59 VGRIVDQGKDKKILVFKSKRRKNFRKMYGHRQPRTVLKIEKI 100

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|BA_4676 BA_4676 "ribosomal protein L21" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 31/102 (30%), Positives = 48/102 (47%)

Query:   103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
             ++A++  G +Q  V  G+ IY ++L      + +  +KVL VG +    +G PVV  A V
Sbjct:     1 MYAIIETGGKQIKVEAGQAIYIEKLD-VEAGETVTFDKVLFVGGENVK-VGSPVVEGATV 58

Query:   163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI 204
              A VE+QG                    GHRQP T++ +  I
Sbjct:    59 TAKVEKQGRAKKIIVFKYKAKKNNRKKQGHRQPYTKLVVEAI 100

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

WB|WBGene00023422 mrpl-21 [Caenorhabditis elegans (taxid:6239)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 31/80 (38%), Positives = 45/80 (56%)

Query:    97 EPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPV 156
             E KR+ +FAVV +  RQ+ V  G  I  +     NV D+I L KVL+VG    +  G+P+
Sbjct:    55 EEKRQRLFAVVYVNGRQWKVSDGDLINMEGNLPLNVGDEIKLEKVLMVGGTNFSLFGRPL 114

Query:   157 VTNAAVHA---VVEEQGLNP 173
             +  +AV     VVE++  NP
Sbjct:   115 LDASAVTVDAVVVEKKTTNP 134

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

TIGR_CMR|CBU_0385 CBU_0385 "ribosomal protein L21" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 30/102 (29%), Positives = 48/102 (47%)

Query:   103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
             ++A++  G +QY V  G+ +  ++L   +V   +  + VL+V      +IG P V +AAV
Sbjct:     1 MYAIIKTGGKQYRVTEGQMLKVEKL-AQDVGQSVKFDDVLMVAAGDELHIGTPSVKDAAV 59

Query:   163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI 204
              A V +QG                    GHRQ  T ++IT I
Sbjct:    60 TAEVVDQGRQAKIEIIKFKRRKHHMKRQGHRQDFTAVKITEI 101

GO:0003735 "structural constituent of ribosome" evidence=ISS

FB|FBgn0036853 mRpL21 "mitochondrial ribosomal protein L21" [Drosophila melanogaster (taxid:7227)]

 Score = 116 (45.9 bits), Expect = 4.9e-07, P = 4.9e-07
 Identities = 31/111 (27%), Positives = 52/111 (46%)

Query:    96 EEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKP 155
             ++ ++  +FAVV +  +Q+ V PG  I  +      + D+I L+KVLL G +  T +G+P
Sbjct:    71 QKSEQGRLFAVVHLCGKQFKVTPGDIILVEGYWPPTIGDEISLDKVLLAGARDFTLVGRP 130

Query:   156 VVTNAA--VHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI 204
             ++      V A V E+ L+                    R P+T +RI  I
Sbjct:   131 ILEPGLILVKATVVEKTLSHTKTHFRKKRRKQYMRINFQRSPHTMVRINSI 181

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

TIGR_CMR|CPS_4512 CPS_4512 "ribosomal protein L21" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 28/104 (26%), Positives = 44/104 (42%)

Query:   103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
             ++AV   G +Q+ V  G+ +  ++L+   V   +  + VL++       +G P V    V
Sbjct:     1 MYAVFQSGGKQHRVTEGQTVRLEKLE-LEVGATVEFDNVLMIANGDNINVGAPYVAGGKV 59

Query:   163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGITG 206
              A V  Q   P                 GHRQ  T ++ITGI G
Sbjct:    60 VAEVVTQARAPKITIVKFKRRKHSRKQAGHRQWFTEVKITGING 103

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|DET_1325 DET_1325 "ribosomal protein L21" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 33/105 (31%), Positives = 43/105 (40%)

Query:   103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
             I+A++  G +QY V PG+ +       A   D I L+KVL++    T  IG P V  A V
Sbjct:     6 IYAIIESGGKQYKVTPGQLVEVDLFDLAE-GDSIELDKVLMLNDGETVTIGSPTVPGAKV 64

Query:   163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI-TG 206
              A V                        GHRQ  T + I  I TG
Sbjct:    65 TATVAGHIKGDKVFAYRFKAKSRNHKKTGHRQLYTVLTIGEILTG 109

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51412	RK21_ARATH	No assigned EC number	0.5944	0.9009	0.9090	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XIX0756	hypothetical protein; This protein binds to 23S rRNA (By similarity) (206 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.I.3103.1	hypothetical protein (176 aa)	•			•	•		•		0.981
	gw1.X.4400.1	hypothetical protein (451 aa)	•			•			•		0.924
	eugene3.00141000	hypothetical protein (227 aa)	•			•	•		•		0.894
	gw1.163.69.1	SubName- Full=Putative uncharacterized protein; (192 aa)				•	•		•		0.892
	eugene3.160500001	Predicted protein (113 aa)	•			•	•		•		0.858
	rpl22	50S ribosomal protein L22 ; This protein binds specifically to 23S rRNA (By similarity) (129 aa)				•	•		•		0.814
	gw1.XI.3444.1	hypothetical protein (174 aa)	•			•	•		•		0.813
	fgenesh4_pg.C_scaffold_2544000001	Predicted protein (312 aa)	•						•		0.799
	fgenesh4_pm.C_LG_XIV000511	hypothetical protein; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to [...] (323 aa)				•			•		0.798
	fgenesh4_pm.C_LG_XIII000297	hypothetical protein (222 aa)	•			•	•		•		0.791

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
pfam00829	96	pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L	9e-42
PRK05573	103	PRK05573, rplU, 50S ribosomal protein L21; Validat	3e-39
COG0261	103	COG0261, RplU, Ribosomal protein L21 [Translation,	2e-35
TIGR00061	101	TIGR00061, L21, ribosomal protein L21	8e-28
CHL00075	108	CHL00075, rpl21, ribosomal protein L21	3e-26
PRK12278	221	PRK12278, PRK12278, 50S ribosomal protein L21/unkn	3e-21

>gnl|CDD|201461 pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein

 Score =  136 bits (345), Expect = 9e-42
 Identities = 49/96 (51%), Positives = 61/96 (63%), Gaps = 1/96 (1%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           +A++  G +QY V  G  I+ ++L  A V DKI  +KVLLVG      IGKP V  A V 
Sbjct: 2   YAIIETGGKQYKVEEGDVIFVEKL-DAEVGDKIEFDKVLLVGGDGKVKIGKPYVEGAKVK 60

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRI 199
           A V E G   KVIVFKYK++KNYR+  GHRQP TR+
Sbjct: 61  AEVLEHGRGKKVIVFKYKRRKNYRKKQGHRQPYTRV 96

Length = 96

>gnl|CDD|235510 PRK05573, rplU, 50S ribosomal protein L21; Validated

 Score =  130 bits (329), Expect = 3e-39
 Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           +A++  G +QY V  G  I  ++L  A V D +  ++VLLVG      IG P V  A V 
Sbjct: 2   YAIIKTGGKQYKVEEGDVIKVEKLD-AEVGDTVEFDEVLLVGGGEEVKIGAPYVEGAKVT 60

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITG 206
           A V E G   KVIVFKYK++KNYR+  GHRQP T+++IT I  
Sbjct: 61  AEVVEHGRGKKVIVFKYKRRKNYRKKQGHRQPYTKVKITSINA 103

Length = 103

>gnl|CDD|223339 COG0261, RplU, Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]

 Score =  120 bits (304), Expect = 2e-35
 Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 1/103 (0%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           +A++  G +QY V  G  I  ++L  A   DK+  ++VL+VG      IG P V  A V 
Sbjct: 2   YAIIKTGGKQYKVEEGDVIKVEKL-DAEPGDKVEFDEVLMVGGGEEVKIGAPYVEGAKVT 60

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITG 206
           A V E G   KVI+FKYK++KNYR+  GHRQP TR++ITGI  
Sbjct: 61  AEVVEHGRGKKVIIFKYKRRKNYRKKQGHRQPYTRVKITGIVA 103

Length = 103

>gnl|CDD|129171 TIGR00061, L21, ribosomal protein L21

 Score =  100 bits (252), Expect = 8e-28
 Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 1/101 (0%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           +A+V IG +QY V  G+ +  ++L  A   D +  +KVL+V       IGKP V  A V 
Sbjct: 1   YAIVEIGGKQYKVEEGQTVRIEKLDAA-PGDTVEFDKVLMVNKGGDVKIGKPYVEGAKVV 59

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGI 204
           A VE+ G   KV V+KY+++K+ R+  GHRQP T++++T I
Sbjct: 60  AEVEKHGRGKKVKVYKYRRRKHSRKKQGHRQPYTKVKVTKI 100

Eubacterial and chloroplast [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 101

>gnl|CDD|177014 CHL00075, rpl21, ribosomal protein L21

 Score = 97.2 bits (243), Expect = 3e-26
 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           +A++  G +Q  V PGRF             KI+LN+VLL+  ++   IGKP + NA V 
Sbjct: 4   YAIIEAGGKQLWVEPGRFYDINHFP-LEPGTKILLNRVLLIRNESEILIGKPWLENATVK 62

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGI 204
             +       K+ V+K + KK  R+  GHRQ  TR  I  I
Sbjct: 63  GRILHHFRGKKITVYKMRPKKKTRKKQGHRQKLTRFLIDSI 103

Length = 108

>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion protein; Provisional

 Score = 87.2 bits (216), Expect = 3e-21
 Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           +FAV+  G +QY V  G  +  ++L  A   + +   +VL++G      +G P V  AAV
Sbjct: 1   MFAVIKTGGKQYKVQAGDLLRVEKLA-AEAGETVQFGEVLMLGEGDNVTVGAPFVDGAAV 59

Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGI 204
            A V EQ    KVI FK +++++ RR  GHRQ  T +RIT I
Sbjct: 60  QAEVIEQIKGDKVIHFKKRRRQSSRRTKGHRQLLTLVRITEI 101

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
CHL00075	108	rpl21 ribosomal protein L21	100.0
PRK05573	103	rplU 50S ribosomal protein L21; Validated	100.0
COG0261	103	RplU Ribosomal protein L21 [Translation, ribosomal	100.0
TIGR00061	101	L21 ribosomal protein L21. Eubacterial and chlorop	100.0
PRK12278	221	50S ribosomal protein L21/unknown domain fusion pr	100.0
PF00829	96	Ribosomal_L21p: Ribosomal prokaryotic L21 protein;	100.0
KOG1686	151	consensus Mitochondrial/chloroplast ribosomal L21	99.95
PF12791	56	RsgI_N: Anti-sigma factor N-terminus; InterPro: IP	87.45

>CHL00075 rpl21 ribosomal protein L21

Probab=100.00  E-value=6.1e-43  Score=276.90  Aligned_cols=106  Identities=34%  Similarity=0.493  Sum_probs=102.6

Q ss_pred             CCeEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEe
Q 027519          101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKY  180 (222)
Q Consensus       101 ~~mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~  180 (222)
                      |.|||||++|||||||++||+|.||+|+ +++||.|+|++|||+++++.+.+|.|||+||+|+|+|++|+|++||++|||
T Consensus         1 ~~myAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~i~l~~VL~~~~~~~~~iG~P~v~~a~V~a~V~~h~r~~Ki~vfK~   79 (108)
T CHL00075          1 MMTYAIIEAGGKQLWVEPGRFYDINHFP-LEPGTKILLNRVLLIRNESEILIGKPWLENATVKGRILHHFRGKKITVYKM   79 (108)
T ss_pred             CcEEEEEEECCEEEEEeCCCEEEEEEcC-CCCCCEEEEEEEEEEecCCCeEECCcEecCcEEEEEEEeecCCCCEEEEEe
Confidence            4799999999999999999999999995 899999999999999988899999999999999999999999999999999


Q ss_pred             cCCCCceeccCccCCceEEEEeeEeeC
Q 027519          181 KKKKNYRRNIGHRQPNTRIRITGITGY  207 (222)
Q Consensus       181 KRRK~yrRk~GHRQ~~TrLrI~~I~~~  207 (222)
                      ||||+|||++||||+||+|+|++|...
T Consensus        80 krRK~yrrk~GHRQ~~T~i~I~~I~~~  106 (108)
T CHL00075         80 RPKKKTRKKQGHRQKLTRFLIDSISFN  106 (108)
T ss_pred             CCCCCccCCCccCCCcEEEEEEEEEcC
Confidence            999999999999999999999999863

>PRK05573 rplU 50S ribosomal protein L21; Validated

Probab=100.00  E-value=3.6e-42  Score=270.04  Aligned_cols=103  Identities=46%  Similarity=0.746  Sum_probs=100.6

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecC
Q 027519          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (222)
Q Consensus       103 mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KR  182 (222)
                      |||||++||+||||++||+|.||+|+ +++||.|+|++|||+++++++.+|.||+++|+|+|+|++|++++|+++|||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~v~~l~-~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~A~V~~~~k~~Ki~vfK~kr   79 (103)
T PRK05573          1 MYAIIKTGGKQYKVEEGDVIKVEKLD-AEVGDTVEFDEVLLVGGGEEVKIGAPYVEGAKVTAEVVEHGRGKKVIVFKYKR   79 (103)
T ss_pred             CEEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEeEEEEEeCCCCEEECCeEcCCCEEEEEEEeccCCCcEEEEEEcC
Confidence            89999999999999999999999995 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCccCCceEEEEeeEee
Q 027519          183 KKNYRRNIGHRQPNTRIRITGITG  206 (222)
Q Consensus       183 RK~yrRk~GHRQ~~TrLrI~~I~~  206 (222)
                      ||+|+|++||||+||+|+|++|.+
T Consensus        80 RK~y~r~~GHRQ~~T~i~I~~I~~  103 (103)
T PRK05573         80 RKNYRKKQGHRQPYTKVKITSINA  103 (103)
T ss_pred             CCCccccCCccCCcEEEEEEEEeC
Confidence            999999999999999999999963

>COG0261 RplU Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.3e-42  Score=268.72  Aligned_cols=103  Identities=46%  Similarity=0.759  Sum_probs=100.6

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecC
Q 027519          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (222)
Q Consensus       103 mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KR  182 (222)
                      |||||++|||||+|++||+|+||+|. +++||+|+||+|||+++++.+.+|.||++||+|.|+|++|+|++||++|||||
T Consensus         1 mYAii~tGGKQykV~~G~~i~vEkl~-~e~g~~v~f~~VL~v~~~~~v~iG~P~v~ga~V~aeV~~hgr~kKV~i~K~k~   79 (103)
T COG0261           1 MYAIIKTGGKQYKVEEGDVIKVEKLD-AEPGDKVEFDEVLMVGGGEEVKIGAPYVEGAKVTAEVVEHGRGKKVIIFKYKR   79 (103)
T ss_pred             CeEEEEECCEEEEEecCCEEEEEEcC-CCCCCEEEEEEEEEEcCCCceEECCceecCcEEEEEEhhhCCCceEEEEEecc
Confidence            89999999999999999999999994 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCccCCceEEEEeeEee
Q 027519          183 KKNYRRNIGHRQPNTRIRITGITG  206 (222)
Q Consensus       183 RK~yrRk~GHRQ~~TrLrI~~I~~  206 (222)
                      ||+|+|++||||+||+|+|++|.+
T Consensus        80 rK~~~rk~GHRQ~yT~vkI~~I~~  103 (103)
T COG0261          80 RKNYRKKQGHRQPYTRVKITGIVA  103 (103)
T ss_pred             CcCcccccCcccceEEEEEEEeeC
Confidence            999999999999999999999963

>TIGR00061 L21 ribosomal protein L21

Probab=100.00  E-value=3.7e-41  Score=263.86  Aligned_cols=101  Identities=41%  Similarity=0.660  Sum_probs=98.8

Q ss_pred             EEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecCC
Q 027519          104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKK  183 (222)
Q Consensus       104 YAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KRR  183 (222)
                      ||||++||+||||++||+|.||+|+ .++||.|+|++|||+++++++.+|+|+|++|+|+|+|++|+|++||++||||||
T Consensus         1 yAIi~~gGkQykV~~Gd~i~Ve~l~-~~~G~~i~l~~VLlv~~~~~~~iG~P~l~~a~V~a~V~~~~r~~Ki~vfK~krr   79 (101)
T TIGR00061         1 YAIVEIGGKQYKVEEGQTVRIEKLD-AAPGDTVEFDKVLMVNKGGDVKIGKPYVEGAKVVAEVEKHGRGKKVKVYKYRRR   79 (101)
T ss_pred             CEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEEEEEEEecCCCeEECCeEcCCCEEEEEEEeecCCCCEEEEEeCCC
Confidence            8999999999999999999999995 799999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeccCccCCceEEEEeeEe
Q 027519          184 KNYRRNIGHRQPNTRIRITGIT  205 (222)
Q Consensus       184 K~yrRk~GHRQ~~TrLrI~~I~  205 (222)
                      |+|||++||||+||+|+|++|.
T Consensus        80 K~y~r~~GHRQ~~T~i~I~~I~  101 (101)
T TIGR00061        80 KHSRKKQGHRQPYTKVKVTKIV  101 (101)
T ss_pred             CCccCCCccCCCcEEEEEEEeC
Confidence            9999999999999999999984

Eubacterial and chloroplast.

>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional

Probab=100.00  E-value=1.1e-39  Score=285.49  Aligned_cols=106  Identities=37%  Similarity=0.544  Sum_probs=102.7

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecC
Q 027519          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (222)
Q Consensus       103 mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KR  182 (222)
                      |||||++|||||||++||+|.|++|. .++||+|.|++|||+++++++.||.|||+|++|+|+|++|+|++||++|||||
T Consensus         1 MyAVI~~gGKQykV~~Gd~i~Vekl~-~~~G~~i~~~~VL~v~~~~~~~iG~P~v~~a~V~A~V~~~~kg~Ki~vfK~kr   79 (221)
T PRK12278          1 MFAVIKTGGKQYKVQAGDLLRVEKLA-AEAGETVQFGEVLMLGEGDNVTVGAPFVDGAAVQAEVIEQIKGDKVIHFKKRR   79 (221)
T ss_pred             CEEEEEeCCEEEEEeCCCEEEEeccC-CCCCCEEEEeEEEEEecCCCeEECCeEecCCEEEEEEEeecCCCCEEEEEeCC
Confidence            89999999999999999999999996 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCccCCceEEEEeeEeeCCC
Q 027519          183 KKNYRRNIGHRQPNTRIRITGITGYQD  209 (222)
Q Consensus       183 RK~yrRk~GHRQ~~TrLrI~~I~~~~~  209 (222)
                      ||+|||++||||+||+|||++|...+.
T Consensus        80 RK~yrrk~GHRQ~~T~i~I~~I~~~g~  106 (221)
T PRK12278         80 RQSSRRTKGHRQLLTLVRITEILASGA  106 (221)
T ss_pred             CCCcccCCCcCCCcEEEEEEEEEcCCc
Confidence            999999999999999999999987554

>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3.3e-40  Score=255.72  Aligned_cols=96  Identities=51%  Similarity=0.800  Sum_probs=93.8

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecC
Q 027519          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (222)
Q Consensus       103 mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KR  182 (222)
                      |||||++||+||+|++||+|.||+| ++++||+|+|++||++++++++.+|+|||++++|+|+|++|++++|+++|||||
T Consensus         1 myAIi~~ggkQykV~~gd~i~v~~l-~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~v~K~kr   79 (96)
T PF00829_consen    1 MYAIIEIGGKQYKVEEGDVIDVERL-DAEVGDKIELDKVLLIGSEDFTLIGRPYLEGAKVEATVLEHGKGKKIIVFKKKR   79 (96)
T ss_dssp             -EEEEESSSEEEEESSSEEEEEEST-SSSTTSEEEETTEEEEETSSSTCSSSSSSSSSEEEEEEEEEEEEEEEEEEEEET
T ss_pred             CEEEEEECCEEEEEeCCCEEEECCc-CcCCCCEEEEEEEEEEecCCCeEECCccCCCcEEEEEEEeccCCCcEEEEEECC
Confidence            8999999999999999999999999 689999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCccCCceEE
Q 027519          183 KKNYRRNIGHRQPNTRI  199 (222)
Q Consensus       183 RK~yrRk~GHRQ~~TrL  199 (222)
                      ||+|+|++||||+||+|
T Consensus        80 RK~y~r~~GhRq~~T~i   96 (96)
T PF00829_consen   80 RKRYRRKQGHRQPYTRI   96 (96)
T ss_dssp             TTTEEEEEEEEEEEEEE
T ss_pred             ccccccCCccCCCeEEC
Confidence            99999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....

>KOG1686 consensus Mitochondrial/chloroplast ribosomal L21 protein [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=2e-27  Score=196.32  Aligned_cols=118  Identities=53%  Similarity=0.634  Sum_probs=113.5

Q ss_pred             CCCCCeEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEE
Q 027519           98 PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIV  177 (222)
Q Consensus        98 ~~~~~mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~V  177 (222)
                      .++...||||.+||+||+|..||.|+.++++..++||+|.|++|||+|+.+++++|+|.|++++|.|.|+|+++..|+++
T Consensus        21 ~kr~~~favv~v~srq~kvs~gd~iy~eg~~p~nv~d~i~l~kVlLvg~~~~T~~grpvv~~vtv~aVv~e~g~~~kvvh  100 (151)
T KOG1686|consen   21 IKRPSGFAVVSVGSRQRKVSSGDTIYTEGLKPKNVLDSIPLPKVLLVGPVEETRIGRPVVKKVTVHAVVEEYGLLFKVVH  100 (151)
T ss_pred             cccCCccEEEEEcceeEEecCCCeeeecCccccccccccccceEEEecCcceeEecCcccccceEEEEeeeccccccEEE
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCceeccCccCCceEEEEeeEeeCCCCCcccc
Q 027519          178 FKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTL  215 (222)
Q Consensus       178 fK~KRRK~yrRk~GHRQ~~TrLrI~~I~~~~~~p~~~~  215 (222)
                      ||+|++|.|||..||||..|+|||++|.+++..+-.++
T Consensus       101 fk~k~~k~tr~~~~~~qe~t~LrIt~it~ie~e~~~~v  138 (151)
T KOG1686|consen  101 FKSKQWKVTRRDLGHRQEATELRITCITGIELEKVLLV  138 (151)
T ss_pred             EEecchhhhhhhhcccCcccEEEEeeeeeeeeccceec
Confidence            99999999999999999999999999999998875544

>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []

Probab=87.45  E-value=1.2  Score=30.73  Aligned_cols=38  Identities=24%  Similarity=0.466  Sum_probs=30.8

Q ss_pred             CCeEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEe
Q 027519          101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVG  145 (222)
Q Consensus       101 ~~mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvg  145 (222)
                      .+.||||.+.       .|+++.+.+-.+.++||+|.|+..-...
T Consensus         4 ~~~~aiVlT~-------dGeF~~ik~~~~~~vG~eI~~~~~~~~~   41 (56)
T PF12791_consen    4 KKKYAIVLTP-------DGEFIKIKRKPGMEVGQEIEFDEKDIIN   41 (56)
T ss_pred             cCCEEEEEcC-------CCcEEEEeCCCCCcccCEEEEechhhcc
Confidence            3578888875       5889999998889999999998865443

Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
3bbo_T	257	Homology Model For The Spinach Chloroplast 50s Subu		3e-41
2j01_V	101	Structure Of The Thermus Thermophilus 70s Ribosome		1e-04
1nkw_P	100	Crystal Structure Of The Large Ribosomal Subunit Fr		7e-04

>pdb|3BBO|T Chain T, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 257

Iteration: 1
 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/118 (69%), Positives = 91/118 (77%)
Query: 98  PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVV 157
           P+ E IFAVV+IGSRQYIV PGR+IYTQRLKGA VNDKI+LNKVLLVGTK +TYIG P+V
Sbjct: 119 PREEIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIV 178
Query: 158 TNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGITGYQDYPAVTL 215
           TNAAVHAVVEEQ L+                  GHRQP TRI+ITGITGY+DYPA TL
Sbjct: 179 TNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTL 236

>pdb|2J01|V Chain V, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 101

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           +FA+V  G +QY V PG  +  ++L  A     + L  +LL G KT   +G PVV  A+V
Sbjct: 1   MFAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELPVLLLGGEKTV--VGTPVVEGASV 57
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGITG 206
            A V   G                    GHRQP T + I  I G
Sbjct: 58  VAEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIRG 101

>pdb|1NKW|P Chain P, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 100

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           +FA++  G +QY V  G  I  + L+G    DK+ L K L VG + T +          V
Sbjct: 1   MFAIIQTGGKQYRVSEGDVIRVESLQG-EAGDKVEL-KALFVGGEQTVF--GEDAGKYTV 56
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGITG 206
            A V E G                    GHRQ  T I+I GI G
Sbjct: 57  QAEVVEHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGIQG 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
3bbo_T	257	Ribosomal protein L21; large ribosomal subunit, sp	4e-47
3r8s_R	103	50S ribosomal protein L21; protein biosynthesis, R	1e-36
3v2d_V	101	50S ribosomal protein L21; ribosome associated inh	8e-36
2zjr_O	100	50S ribosomal protein L21; ribosome, large ribosom	7e-35

>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 257

 Score =  155 bits (392), Expect = 4e-47
 Identities = 118/240 (49%), Positives = 138/240 (57%), Gaps = 24/240 (10%)

Query: 5   SSCATLALCSSLTSHCKISC-QNPNPHPQLSLSKSKLCSFPSPKLY---------TRPTF 54
           +S      CSSL +  K+    NP       LSK        P L           R  F
Sbjct: 2   ASATLAFSCSSLCATLKLPQNLNPLLLNVPPLSKPFSGVVSPPSLSRLSLLPVAAKRRRF 61

Query: 55  SFTHKFSQTEPPPVSEPEVE--------------PEAALEAEAEPTTEVVESAAKEEPKR 100
               +  + E      P  +              PE       +   + +       P+ 
Sbjct: 62  QEIPEELKAEFEEFQRPPNQKPQLSDVLPDDFQAPEPGTPEYNDIINQFLPKKGPPPPRE 121

Query: 101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNA 160
           E IFAVV+IGSRQYIV PGR+IYTQRLKGA VNDKI+LNKVLLVGTK +TYIG P+VTNA
Sbjct: 122 EIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNA 181

Query: 161 AVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDSLKS 220
           AVHAVVEEQ L+ KVIVFKYKKKKNYRRNIGHRQP TRI+ITGITGY+DYPA TL++   
Sbjct: 182 AVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEAEVE 241

>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ... Length = 103

 Score =  123 bits (310), Expect = 1e-36
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           +AV   G +Q+ V  G+ +  ++L      + +   +VL++       IG P V    + 
Sbjct: 2   YAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIK 60

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITG 206
           A V   G   KV + K++++K+YR+  GHRQ  T ++ITGI+ 
Sbjct: 61  AEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGISA 103

>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ... Length = 101

 Score =  121 bits (305), Expect = 8e-36
 Identities = 43/103 (41%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           FA+V  G +QY V PG  +  ++L  A     + L  +LL G KT   +G PVV  A+V 
Sbjct: 2   FAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELPVLLLGGEKTV--VGTPVVEGASVV 58

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITG 206
           A V   G   K++V K+K K  YRR  GHRQP T + I  I G
Sbjct: 59  AEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIRG 101

>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ... Length = 100

 Score =  118 bits (299), Expect = 7e-35
 Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           FA++  G +QY V  G  I  + L+     DK+ L  + + G +T   +         V 
Sbjct: 2   FAIIQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELKALFVGGEQT---VFGEDAGKYTVQ 57

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITG 206
           A V E G   K+ + KYK    YRR  GHRQ  T I+I GI G
Sbjct: 58  AEVVEHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGIQG 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
3bbo_T	257	Ribosomal protein L21; large ribosomal subunit, sp	100.0
3r8s_R	103	50S ribosomal protein L21; protein biosynthesis, R	100.0
3v2d_V	101	50S ribosomal protein L21; ribosome associated inh	100.0
2zjr_O	100	50S ribosomal protein L21; ribosome, large ribosom	100.0

>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=4.1e-59  Score=411.85  Aligned_cols=210  Identities=59%  Similarity=0.815  Sum_probs=102.9

Q ss_pred             HHHHH-hhhcCcccccCCC-CCCCCCCCcccCCCCCCC-CCC-C-------cccCCCcccCcccC-----CCCCCC----
Q 027519            8 ATLAL-CSSLTSHCKISCQ-NPNPHPQLSLSKSKLCSF-PSP-K-------LYTRPTFSFTHKFS-----QTEPPP----   67 (222)
Q Consensus         8 ~~~~~-c~s~~~~c~~~~~-~~~~~~~~~~s~~~~~~~-~~t-~-------~~~r~~~~~~~~~~-----~~~~~~----   67 (222)
                      ++++| ||||++||+|+++ ||++..++.+|+|++|.+ |++ +       ..+|++|++.|+++     |++..+    
T Consensus         4 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~   83 (257)
T 3bbo_T            4 ATLAFSCSSLCATLKLPQNLNPLLLNVPPLSKPFSGVVSPPSLSRLSLLPVAAKRRRFQEIPEELKAEFEEFQRPPNQKP   83 (257)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEeeeccceeeeeccCCCCCccccccccCCccccccCCCcccccccccccccCcccccchhhhhhchhhhccccccCc
Confidence            34677 9999999999999 888888888999999877 655 2       23599999999988     665421    


Q ss_pred             -CCCCCCCchhhhhcccCCchH-HHHHh--hccCCCCCC-eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEE
Q 027519           68 -VSEPEVEPEAALEAEAEPTTE-VVESA--AKEEPKREE-IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVL  142 (222)
Q Consensus        68 -~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~-mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVL  142 (222)
                       +.+.|.+.+++|+++---+.+ .++.+  +.+..++.+ |||||++|||||||++||+|+|++|+++++||+|+|++||
T Consensus        84 ~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~~~~MYAIIetGGKQYKV~~GD~I~VEKL~~aevGd~V~LdkVL  163 (257)
T 3bbo_T           84 QLSDVLPDDFQAPEPGTPEYNDIINQFLPKKGPPPPREEIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVL  163 (257)
T ss_dssp             ----------------------------------------CCCCCCSSSCCCCCCTTCCCCCCCCTTSCTTCEEECTTCC
T ss_pred             ceeecCCCccCCcccccccccccccccccccccCCCcCCCeEEEEEECCEEEEEeCCCEEEEeCCCCCCCCCEEEEEEEE
Confidence             222222222344444111222 22222  234455555 9999999999999999999999999878999999999999


Q ss_pred             EEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecCCCCceeccCccCCceEEEEeeEeeCCCCCcccccc
Q 027519          143 LVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDS  217 (222)
Q Consensus       143 lvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KRRK~yrRk~GHRQ~~TrLrI~~I~~~~~~p~~~~~~  217 (222)
                      |+|+++++.+|.|||++++|+|+|++|+|++||+||||||||+|||++||||+||+|||++|.+++.+|++++|.
T Consensus       164 lVg~~d~t~VG~P~V~gAkV~AtVveh~KgkKIiVFK~KRRK~yRRk~GHRQ~~T~LrI~~I~~~g~~~~~~~~~  238 (257)
T 3bbo_T          164 LVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEA  238 (257)
T ss_dssp             CBCSSSCBCCSSSSCSSCCCEEECCCCCCCSCCCEEECCTTTTCCEEECCCCCCCCCCCCCCCC-----------
T ss_pred             EEeCCCCeEeCCcccCCCEEEEEEEeecCCCcEEEEEeCCCCCCcCCCCccCCcEEEEEEEEEcCCCCccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999874

>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...

Probab=100.00  E-value=1.2e-43  Score=277.69  Aligned_cols=103  Identities=30%  Similarity=0.530  Sum_probs=100.8

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecC
Q 027519          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (222)
Q Consensus       103 mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KR  182 (222)
                      |||||++|||||+|++||+|+||+|+ +++||+|+|++|||+++++++.+|.|||++|+|+|+|++|+|++|+++|||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~~VLlv~~~~~~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr   79 (103)
T 3r8s_R            1 MYAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRR   79 (103)
T ss_dssp             CEEEEECSSSEEEEETTCEEEESCCC-SCTTCEEEECCEEEEESSSEEECSSSSCTTCEEEEEEEEEEECCCEEEEEEET
T ss_pred             CEEEEEECCEEEEEeCCCEEEECCcC-CCCCCEEEEeEEEEEecCCCEEECCcccCCcEEEEEEEeccCCCcEEEEEecC
Confidence            99999999999999999999999996 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCccCCceEEEEeeEee
Q 027519          183 KKNYRRNIGHRQPNTRIRITGITG  206 (222)
Q Consensus       183 RK~yrRk~GHRQ~~TrLrI~~I~~  206 (222)
                      ||+|||++||||+||+|+|++|.+
T Consensus        80 rK~yrrk~GHRQ~~T~l~I~~I~~  103 (103)
T 3r8s_R           80 RKHYRKQQGHRQWFTDVKITGISA  103 (103)
T ss_dssp             TTTEEEEEEECCEEEEEEEEEEEC
T ss_pred             CCCccCCCcccCCeEEEEEEEEEC
Confidence            999999999999999999999963

>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...

Probab=100.00  E-value=1.3e-42  Score=271.15  Aligned_cols=101  Identities=43%  Similarity=0.648  Sum_probs=97.4

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecC
Q 027519          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (222)
Q Consensus       103 mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KR  182 (222)
                      |||||++|||||+|++||+|+||+|+ +++||+|+|+ |||+++++ +.+|+|||++|+|+|+|++|+|++|+++|||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~~~-~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr   77 (101)
T 3v2d_V            1 MFAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELP-VLLLGGEK-TVVGTPVVEGASVVAEVLGHGRGKKILVSKFKA   77 (101)
T ss_dssp             CEEEEEETTEEEEECTTCEEEESCCS-CCTTCEEEEC-EEEEESSS-CEECSSSCSSCCEEEEEEEEEECCCEEEEEEET
T ss_pred             CEEEEEeCCEEEEEeCCCEEEECCcC-CCCCCEEEEE-EEEECCCc-eEECCcccCCCEEEEEEeeccCCCcEEEEEECC
Confidence            99999999999999999999999996 8999999999 99998554 999999999999999999999999999999999


Q ss_pred             CCCceeccCccCCceEEEEeeEee
Q 027519          183 KKNYRRNIGHRQPNTRIRITGITG  206 (222)
Q Consensus       183 RK~yrRk~GHRQ~~TrLrI~~I~~  206 (222)
                      ||+|||++||||+||+|+|++|.+
T Consensus        78 rK~yrrk~GHRQ~~T~l~I~~I~g  101 (101)
T 3v2d_V           78 KVQYRRKKGHRQPYTELLIKEIRG  101 (101)
T ss_dssp             TTTEEEEEEECCEEEEEEEEEECC
T ss_pred             CCCcCCCCcccCCeEEEEEEEEeC
Confidence            999999999999999999999964

>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...

Probab=100.00  E-value=5.2e-42  Score=267.14  Aligned_cols=99  Identities=38%  Similarity=0.592  Sum_probs=92.5

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecC
Q 027519          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (222)
Q Consensus       103 mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KR  182 (222)
                      |||||++|||||+|++||+|+||+|+ +++||+|+|+ |||+++ +++.+|.| |++|+|+|+|++|+|++|+++|||||
T Consensus         1 myAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~-~~~~iG~P-v~~a~V~a~V~~~~k~~Kv~vfK~kr   76 (100)
T 2zjr_O            1 MFAIIQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELK-ALFVGG-EQTVFGED-AGKYTVQAEVVEHGRGKKIYIRKYKS   76 (100)
T ss_dssp             ----CCSSCCSCCSCCEEEEECCSCC-SSCCEEEECC-SCEETT-SCEECSST-TTTSCEEEEEEECCBCCCEEEEEECS
T ss_pred             CEEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEE-EEEEcC-CCeEECCc-CCCCEEEEEEEeecCCCcEEEEEECC
Confidence            89999999999999999999999996 8999999999 999998 88999999 99999999999999999999999999


Q ss_pred             CCCceeccCccCCceEEEEeeEe
Q 027519          183 KKNYRRNIGHRQPNTRIRITGIT  205 (222)
Q Consensus       183 RK~yrRk~GHRQ~~TrLrI~~I~  205 (222)
                      ||+|||++||||+||+|+|++|.
T Consensus        77 rK~yrrk~GHRQ~~T~l~I~~I~   99 (100)
T 2zjr_O           77 GVQYRRRTGHRQNFTAIKILGIQ   99 (100)
T ss_dssp             SSCCEEEEEECCBEEEEECCCC-
T ss_pred             CCCCcCCCCccCCcEEEEEEEEE
Confidence            99999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d2qamr1	103	b.155.1.1 (R:1-103) Ribosomal protein L21p {Escher	1e-35
d2j01v1	101	b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermu	1e-32
d2zjro1	94	b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinoco	4e-25

>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]} Length = 103

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Escherichia coli [TaxId: 562]

 Score =  119 bits (300), Expect = 1e-35
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 1/102 (0%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           +AV   G +Q+ V  G+ +  ++L      + +   +VL++       IG P V    + 
Sbjct: 2   YAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIK 60

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGIT 205
           A V   G   KV + K++++K+YR+  GHRQ  T ++ITGI+
Sbjct: 61  AEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGIS 102

>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]} Length = 101

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Thermus thermophilus [TaxId: 274]

 Score =  111 bits (280), Expect = 1e-32
 Identities = 43/103 (41%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           FA+V  G +QY V PG  +  ++L  A     + L  +LL G KT   +G PVV  A+V 
Sbjct: 2   FAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELPVLLLGGEKT--VVGTPVVEGASVV 58

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITG 206
           A V   G   K++V K+K K  YRR  GHRQP T + I  I G
Sbjct: 59  AEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIRG 101

>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]} Length = 94

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 92.2 bits (229), Expect = 4e-25
 Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 107 VMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVV 166
           +  G +QY V  G  I  + L+     DK+ L  + + G +    +         V A V
Sbjct: 1   IQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELKALFVGGEQ---TVFGEDAGKYTVQAEV 56

Query: 167 EEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGI 204
            E G   K+ + KYK    YRR  GHRQ  T I+I GI
Sbjct: 57  VEHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGI 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d2qamr1	103	Ribosomal protein L21p {Escherichia coli [TaxId: 5	100.0
d2j01v1	101	Ribosomal protein L21p {Thermus thermophilus [TaxI	100.0
d2zjro1	94	Ribosomal protein L21p {Deinococcus radiodurans [T	100.0

>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.2e-43  Score=270.56  Aligned_cols=103  Identities=30%  Similarity=0.530  Sum_probs=100.5

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecC
Q 027519          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (222)
Q Consensus       103 mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KR  182 (222)
                      |||||++||+||||++||+|.||+|. +++||+|+|++|||+++++++.+|+|||++++|+|+|++|+|++||++|||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~v~~l~-~~~G~~i~~~~VLlv~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~kr   79 (103)
T d2qamr1           1 MYAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRR   79 (103)
T ss_dssp             CCCCCCSSSSCCCCCSSCCEEESCCC-CCTTCEEEECCCSCCCSSSCCCCSSSSCSSCCEEEEEEEEECCCCEEEEEECT
T ss_pred             CEEEEEECCEEEEEcCCCEEEEeccC-CCCCCcEEehhheEcCCCCcEEeCCCcccccEEEEEEeeecCCccEEEEEecC
Confidence            99999999999999999999999995 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCccCCceEEEEeeEee
Q 027519          183 KKNYRRNIGHRQPNTRIRITGITG  206 (222)
Q Consensus       183 RK~yrRk~GHRQ~~TrLrI~~I~~  206 (222)
                      ||+|||++||||+||+|+|++|.+
T Consensus        80 rk~yrr~~GHRQ~~T~i~I~~I~a  103 (103)
T d2qamr1          80 RKHYRKQQGHRQWFTDVKITGISA  103 (103)
T ss_dssp             TSSCEEEEEECCCEEEECCCCCCC
T ss_pred             CCcccccCcccCCeEEEEEEEEeC
Confidence            999999999999999999999863

>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.9e-40  Score=256.56  Aligned_cols=101  Identities=41%  Similarity=0.595  Sum_probs=94.6

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecC
Q 027519          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (222)
Q Consensus       103 mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KR  182 (222)
                      |||||++||+||||++||+|.||++. +++|+.++|+.||+.  ++.+.+|.|||++|+|+|+|++|+|++||++|||||
T Consensus         1 MyAVi~~gGkQykV~~Gd~l~v~~l~-~~~g~~v~~~~ll~~--~~~~~iG~P~l~~a~V~a~V~~~~k~~Kv~vfK~kr   77 (101)
T d2j01v1           1 MFAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELPVLLLG--GEKTVVGTPVVEGASVVAEVLGHGRGKKILVSKFKA   77 (101)
T ss_dssp             CCCEEEETTEEEECCSSCCCCCCCCS-CCSSSCCBCCCCSCC--CSSTTCCCCCGGGCSSCCCCEECCCCCCCCCCCCCE
T ss_pred             CEEEEEECCEEEEEcCCCEEEEeccc-CCCCccEEEEEEEEc--CCceeeCCcccCCcEEEEEEEEecCCCcEEEEEEcC
Confidence            99999999999999999999999995 899999999965553  345779999999999999999999999999999999


Q ss_pred             CCCceeccCccCCceEEEEeeEee
Q 027519          183 KKNYRRNIGHRQPNTRIRITGITG  206 (222)
Q Consensus       183 RK~yrRk~GHRQ~~TrLrI~~I~~  206 (222)
                      ||+|||++||||+||+|+|++|++
T Consensus        78 RK~y~R~~GHRQ~~T~l~I~~I~G  101 (101)
T d2j01v1          78 KVQYRRKKGHRQPYTELLIKEIRG  101 (101)
T ss_dssp             ECCCCEECCCCCCCCCCCCEECCC
T ss_pred             cCCcccCCcccCCeEEEEEEEeeC
Confidence            999999999999999999999974

>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=9.4e-36  Score=227.49  Aligned_cols=94  Identities=34%  Similarity=0.472  Sum_probs=86.0

Q ss_pred             EEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecCCCCc
Q 027519          107 VMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNY  186 (222)
Q Consensus       107 VeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KRRK~y  186 (222)
                      |++||+||+|++||+|.||+|. .++||+|+|+.||+.  ++.+ +|.|++.+|+|+|+|++|+|++||++|||||||+|
T Consensus         1 I~tGGKQykV~~Gd~i~vekl~-~~~G~~i~~~~vl~~--g~~~-~~g~~l~~a~V~a~V~~~~r~~Ki~vfK~krrK~y   76 (94)
T d2zjro1           1 IQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELKALFVG--GEQT-VFGEDAGKYTVQAEVVEHGRGKKIYIRKYKSGVQY   76 (94)
T ss_dssp             CCSSCCSCCSCCEEEEECCSCC-SSCCEEEECCSCEET--TSCE-ECSSTTTTSCEEEEEEECCBCCCEEEEEECSSSCC
T ss_pred             CccCCEEEEEcCCCEEEEeccc-CccCCceEEeeeEEc--cccc-ccCCCCceeEEEEEEEEeccCCceEEEEEcCCCCc
Confidence            5789999999999999999996 799999999998873  3445 45566999999999999999999999999999999


Q ss_pred             eeccCccCCceEEEEeeE
Q 027519          187 RRNIGHRQPNTRIRITGI  204 (222)
Q Consensus       187 rRk~GHRQ~~TrLrI~~I  204 (222)
                      ||++||||+||+|+|++|
T Consensus        77 rRk~GHRQ~~T~vkI~~I   94 (94)
T d2zjro1          77 RRRTGHRQNFTAIKILGI   94 (94)
T ss_dssp             EEEEEECCBEEEEECCCC
T ss_pred             cccCCccCCcEEEEEEEC
Confidence            999999999999999987