Citrus Sinensis ID: 027522

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI
Secondary Structure (PSIPRED)
cEEEccccccccEEEEEEEEccEEEEEEEcccccEEEEEEEEEccEEccccccccccccEEEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEEEccEEEccccEEEEccccccccccccccccccccccccEEEEEEcccEEEEEEccccccccccccccccccEEEEEEEEccccccEEEcccEEEEccccccccccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccEEEEEEEccEEEEEEcccccEEEEEEEEcccccccccccccccccEEEEEEEccccEEEEEccccccEEEEEccccccccEEEEEEEEEEEEccccEEEEEccccccccccccccccEccccccEEEEEccccEEEEEccccccHHHHcccHHcccccEEEEEEcccccccEEEcccEEEEcccccccccccEEEEcccccccccEcc
Coil and Loop (DISEMBL)
mqirflhdpskdigfVGCALASTMVRfsktqdgswnhEVAISVKSLKVqnwilpempglITDFLISLDDRFLYFsnwlhgdirqyniedpknpvltgqiwvgglfrkgspvvavtddgqpyqsdvpevqghrlrggpqMIQLSLDGKRLYVTNSlfsawdcqfypelkekgshmlqidvnsekggmainpnffvdfeaepdgpalahemrypggdctsdiwi
Flexible Loop (DISEMBL)
mqirflhdpskdiGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVpevqghrlrgGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHemrypggdctsdiwi
Low Complexity Region (SEG)
MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI
Disordered region (IsUnstruct)
*********SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTD*********************QMIQLSLDGKRLYVTNSLFSAWDCQFYP**********************INPNFFVDF**************************
Disordered Region (DISOPRED)
MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI
Disordered Region (DISEMBL)
MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI
Disordered Region (DISPRO)
MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
O23264	490	Selenium-binding protein	yes	no	1.0	0.453	0.788	1e-104
Q93WN0	487	Selenium-binding protein	no	no	1.0	0.455	0.779	1e-103
Q9LK38	480	Selenium-binding protein	no	no	1.0	0.462	0.770	1e-101
Q569D5	472	Selenium-binding protein	yes	no	1.0	0.470	0.653	9e-83
Q5RF48	472	Selenium-binding protein	yes	no	1.0	0.470	0.644	3e-81
Q52KZ7	472	Selenium-binding protein	N/A	no	1.0	0.470	0.639	3e-81
Q13228	472	Selenium-binding protein	yes	no	1.0	0.470	0.635	6e-81
Q6DCH7	472	Selenium-binding protein	N/A	no	1.0	0.470	0.635	1e-80
Q8VIF7	472	Selenium-binding protein	yes	no	1.0	0.470	0.648	2e-80
Q2KJ32	472	Selenium-binding protein	yes	no	1.0	0.470	0.639	3e-80

>sp|O23264|SEBP1_ARATH Selenium-binding protein 1 OS=Arabidopsis thaliana GN=SBP1 PE=1 SV=1

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 175/222 (78%), Positives = 198/222 (89%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLHDPSKD GFVG AL+S M+RF K  D +W+HEV ISVK LKV+NWILPEMPGLI
Sbjct: 269 LEIRFLHDPSKDTGFVGSALSSNMIRFFKNSDETWSHEVVISVKPLKVENWILPEMPGLI 328

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TDFLISLDDRF+YF NWLHGDIRQYNIEDPKNPVLTGQIWVGGL +KGSPV AV +DG  
Sbjct: 329 TDFLISLDDRFIYFVNWLHGDIRQYNIEDPKNPVLTGQIWVGGLLQKGSPVKAVGEDGNT 388

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
           +Q +VP+++G  LRGGPQMIQLSLDGKRLY TNSLFSAWD QFYPE+ EKGSH++QIDV+
Sbjct: 389 FQFEVPQIKGKSLRGGPQMIQLSLDGKRLYATNSLFSAWDRQFYPEIMEKGSHIIQIDVD 448

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           +EKGG+ INP+FFVDF  EPDGP+LAHEMRYPGGDCTSDIWI
Sbjct: 449 TEKGGLTINPDFFVDFGDEPDGPSLAHEMRYPGGDCTSDIWI 490

Binds cadmium and mediates lower sensitivity to stress requiring glutathione (GSH) for tolerance (e.g. cadmium, selenate, and hydrogen peroxide excess). Probably helps to detoxify cadmium potentially through direct binding.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93WN0|SEBP2_ARATH Selenium-binding protein 2 OS=Arabidopsis thaliana GN=SBP2 PE=2 SV=1

 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 173/222 (77%), Positives = 195/222 (87%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLHDPSKD G+VG AL+S M+RF K  D +W+HEV ISVK LKV+NWILPEMPGLI
Sbjct: 266 LEIRFLHDPSKDTGYVGSALSSNMIRFFKNSDDTWSHEVVISVKPLKVENWILPEMPGLI 325

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TDFLISLDDRF YF NWLHGDIRQYNIEDPKNPVLTGQIWVGGL +KGSP  AV +DG  
Sbjct: 326 TDFLISLDDRFFYFVNWLHGDIRQYNIEDPKNPVLTGQIWVGGLLQKGSPYKAVGEDGNT 385

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
           YQ DVP+++G  LR GPQMIQLSLDGKRLY TNSLFSAWD QFYPE+ EKGSH++QIDV+
Sbjct: 386 YQFDVPQIKGKSLRAGPQMIQLSLDGKRLYATNSLFSAWDRQFYPEIMEKGSHIIQIDVD 445

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           ++KGG+ +NP+FFVDF  EPDGPALAHEMRYPGGDCTSDIWI
Sbjct: 446 TDKGGLTLNPDFFVDFGDEPDGPALAHEMRYPGGDCTSDIWI 487

Required for the fusion of female gametophyte polar nuclei.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK38|SEBP3_ARATH Selenium-binding protein 3 OS=Arabidopsis thaliana GN=SBP3 PE=2 SV=1

 Score =  369 bits (947), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/222 (77%), Positives = 198/222 (89%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           +++RFLH+P K  GF GCAL+ST+VRF K  D +W+HEVAISV+ LKV+NWILPEMPGLI
Sbjct: 259 LEVRFLHEPDKATGFAGCALSSTLVRFFKNDDETWSHEVAISVEPLKVENWILPEMPGLI 318

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TDFLISLDDRFLY SNWLHGDIRQYNIEDPK PVLTGQI VGGL +KGS V+A+ ++G+ 
Sbjct: 319 TDFLISLDDRFLYCSNWLHGDIRQYNIEDPKTPVLTGQIHVGGLVQKGSLVLALGEEGKA 378

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
           +Q DVP+++G RLRGGPQM QLSLDGKRLYVTNSLFS WD QFYPEL EKGSHMLQIDV+
Sbjct: 379 FQFDVPKIKGQRLRGGPQMFQLSLDGKRLYVTNSLFSVWDRQFYPELVEKGSHMLQIDVD 438

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           ++KGG++INPNFFVDF  EPDGP+LAHEMRYPGGDCTSDIW+
Sbjct: 439 TDKGGLSINPNFFVDFGTEPDGPSLAHEMRYPGGDCTSDIWV 480

Arabidopsis thaliana (taxid: 3702)

>sp|Q569D5|SBP1_XENTR Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1

 Score =  306 bits (783), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 145/222 (65%), Positives = 172/222 (77%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLHDP    G VGCAL+ST+ RF K +DG W  E  I V S KV+ W LPEMPGLI
Sbjct: 251 LEIRFLHDPDAAQGLVGCALSSTVFRFYKEKDGKWAAEKVIKVPSKKVEGWALPEMPGLI 310

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TD LISLDDRFLYFSNWLHGDIRQY+I DP+NP L GQI++GG   +G PV  + D    
Sbjct: 311 TDILISLDDRFLYFSNWLHGDIRQYDITDPRNPKLVGQIFLGGSILRGGPVTVLEDKDLE 370

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
            Q D   V+G ++ GGPQMIQLSLDGKRLYVTNSL+S WD QFYP++ ++GS MLQIDV+
Sbjct: 371 CQPDPVIVKGKKVPGGPQMIQLSLDGKRLYVTNSLYSKWDKQFYPDMIKEGSVMLQIDVD 430

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           +EKGG+ +NPNF VDF  EP GP LAHE+RYPGGDC+SDIW+
Sbjct: 431 TEKGGLKLNPNFLVDFGKEPGGPVLAHELRYPGGDCSSDIWV 472

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Xenopus tropicalis (taxid: 8364)

>sp|Q5RF48|SBP1_PONAB Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1

 Score =  301 bits (770), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 143/222 (64%), Positives = 173/222 (77%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLH+P    GFVGCAL+ST+ RF K + G+W+ E  I V   KV+ W+LPEMPGLI
Sbjct: 251 LEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKGWLLPEMPGLI 310

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TD L+SLDDRFLYFSNWLHGD+RQY+I DP+ P LTGQ++VGG   KG PV  + D    
Sbjct: 311 TDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFVGGSIVKGGPVQVLEDQELK 370

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
            Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP+L  +GS MLQ+DV+
Sbjct: 371 SQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDLIREGSVMLQVDVD 430

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           + KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct: 431 TVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Pongo abelii (taxid: 9601)

>sp|Q52KZ7|SBP1A_XENLA Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-a PE=2 SV=1

 Score =  301 bits (770), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 142/222 (63%), Positives = 173/222 (77%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLH+P  D G VGCAL+S++ RF K +DG W  E  I V S KV+ W +PEMPGLI
Sbjct: 251 LEIRFLHNPDADQGLVGCALSSSIFRFYKEKDGKWAAEKVIQVPSKKVEGWPMPEMPGLI 310

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TD LISLDDRFLYFSNWLHGDIRQY+I D +NP L GQI++GG  ++G PV  + D    
Sbjct: 311 TDILISLDDRFLYFSNWLHGDIRQYDITDTRNPKLVGQIFLGGSIQRGGPVTVLEDKELE 370

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
            Q D   V+G  + GGPQMIQLSLDGKR+YVT+SL+S WD QFYP+L ++G+ MLQIDV+
Sbjct: 371 CQPDPVTVKGKIIPGGPQMIQLSLDGKRIYVTSSLYSIWDKQFYPDLLKEGAVMLQIDVD 430

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           ++KGG+ +NPNF VDF  EPDGP LAHE+RYPGGDCTSDIWI
Sbjct: 431 TKKGGLKLNPNFLVDFGKEPDGPVLAHEIRYPGGDCTSDIWI 472

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Xenopus laevis (taxid: 8355)

>sp|Q13228|SBP1_HUMAN Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2

 Score =  300 bits (767), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 141/222 (63%), Positives = 174/222 (78%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLH+P    GFVGCAL+ST+ RF K + G+W+ E  I V   KV+ W+LPEMPGLI
Sbjct: 251 LEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKGWLLPEMPGLI 310

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TD L+SLDDRFLYFSNWLHGD+RQY+I DP+ P LTGQ+++GG   KG PV  + D+   
Sbjct: 311 TDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELK 370

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
            Q +   V+G R+ GGPQMIQLSLDGKRLY+T SL+SAWD QFYP+L  +GS MLQ+DV+
Sbjct: 371 SQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVD 430

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           + KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct: 431 TVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Homo sapiens (taxid: 9606)

>sp|Q6DCH7|SBP1B_XENLA Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-b PE=2 SV=1

 Score =  298 bits (764), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/222 (63%), Positives = 172/222 (77%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLH+P  D G VGCAL+S++ RF K +DG W  E  I V S KV+ W LPEMPGLI
Sbjct: 251 LEIRFLHNPDADQGLVGCALSSSIFRFYKEKDGKWAAEKVIQVPSKKVEGWALPEMPGLI 310

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TD LISLDDRFLYFSNWLHGDIRQY+I + +NP L GQI++GG  +KG PV    D    
Sbjct: 311 TDILISLDDRFLYFSNWLHGDIRQYDITNIRNPKLVGQIFLGGSIQKGGPVAVQEDKELE 370

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
            Q D   V+G  + GGPQMIQLSLDGKR+YVT+S++S WD QFYP++ ++G+ MLQIDV+
Sbjct: 371 CQPDPVTVKGKIIPGGPQMIQLSLDGKRIYVTSSIYSIWDKQFYPDMLKEGAVMLQIDVD 430

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           +EKGG+ +NPNF VDF  EPDGP LAHE+RYPGGDC+SDIWI
Sbjct: 431 TEKGGLKLNPNFLVDFGKEPDGPVLAHELRYPGGDCSSDIWI 472

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Xenopus laevis (taxid: 8355)

>sp|Q8VIF7|SBP1_RAT Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1

 Score =  298 bits (762), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 144/222 (64%), Positives = 170/222 (76%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLHDP    GFVGCAL+S + RF K + G+W+ E  I V S KV+ W+LPEMPGLI
Sbjct: 251 LEIRFLHDPDATQGFVGCALSSNIQRFYKNEGGTWSVEKVIQVPSKKVKGWMLPEMPGLI 310

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TD L+SLDDRFLYFSNWLHGDIRQY+I +PK P LTGQI++GG   KG  V  + D    
Sbjct: 311 TDILLSLDDRFLYFSNWLHGDIRQYDISNPKKPRLTGQIFLGGSIVKGGSVQVLEDQELT 370

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
            Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP L  +GS MLQIDV+
Sbjct: 371 CQPEPLVVKGKRVPGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPNLIREGSVMLQIDVD 430

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           +  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct: 431 TANGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Rattus norvegicus (taxid: 10116)

>sp|Q2KJ32|SBP1_BOVIN Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1

 Score =  297 bits (761), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 142/222 (63%), Positives = 170/222 (76%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLH+P+ D GFVGCAL S + RF K Q G+W+ E  I V   KV+ WILPEMP LI
Sbjct: 251 LEIRFLHNPAADQGFVGCALGSNIQRFYKNQGGTWSVEKVIQVPPKKVKGWILPEMPSLI 310

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TD L+SLDDRFLYFSNWLHGD+RQY+I DPK P L GQI++GG   KG PV  + D    
Sbjct: 311 TDILLSLDDRFLYFSNWLHGDLRQYDISDPKRPRLVGQIFLGGSIVKGGPVQVLEDQELK 370

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
            Q +   V+G R+ GGPQMIQLSLDG RLYVT SL+SAWD QFYP+L  +GS MLQIDV+
Sbjct: 371 CQPEPLVVKGKRVAGGPQMIQLSLDGTRLYVTTSLYSAWDKQFYPDLIREGSVMLQIDVD 430

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           + +GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIW+
Sbjct: 431 TVRGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 472

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
356525197	484	PREDICTED: selenium-binding protein 2 [G	1.0	0.458	0.833	1e-108
224055825	483	predicted protein [Populus trichocarpa]	1.0	0.459	0.833	1e-108
224129200	483	predicted protein [Populus trichocarpa]	1.0	0.459	0.833	1e-107
255559184	475	selenium-binding protein, putative [Rici	1.0	0.467	0.833	1e-107
15485716	487	selenium binding protein [Lotus japonicu	1.0	0.455	0.828	1e-107
225433514	473	PREDICTED: selenium-binding protein 1 [V	1.0	0.469	0.815	1e-107
15485722	478	selenium binding protein [Glycine max]	1.0	0.464	0.819	1e-106
15485720	488	selenium binding protein [Medicago sativ	1.0	0.454	0.819	1e-106
356512429	488	PREDICTED: selenium-binding protein 2-li	1.0	0.454	0.819	1e-106
356568342	484	PREDICTED: selenium-binding protein 1-li	1.0	0.458	0.815	1e-106

>gi|356525197|ref|XP_003531213.1| PREDICTED: selenium-binding protein 2 [Glycine max]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/222 (83%), Positives = 205/222 (92%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           +++RFLHDPSKD GFVGCAL+S MVRF KT+D SW+HEVAISVK LKVQNWILPEMPGLI
Sbjct: 263 LEVRFLHDPSKDTGFVGCALSSNMVRFFKTEDESWSHEVAISVKPLKVQNWILPEMPGLI 322

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TDFLISLDDRFLYF NWLHGDIRQYNIEDPKNPVLTGQ+WVGGL +KGSP+VA+T+DG  
Sbjct: 323 TDFLISLDDRFLYFVNWLHGDIRQYNIEDPKNPVLTGQVWVGGLLQKGSPIVAITEDGNT 382

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
           +QSDVP++QG++LR GPQMIQLSLDGKR+YVTNSLFSAWD QFYPEL EKGSHMLQIDV+
Sbjct: 383 WQSDVPDIQGNKLRAGPQMIQLSLDGKRVYVTNSLFSAWDKQFYPELVEKGSHMLQIDVD 442

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           +E GG+ INPNFFVDF AEP GP LAHEMRYPGGDCTSDIWI
Sbjct: 443 TENGGLKINPNFFVDFGAEPGGPCLAHEMRYPGGDCTSDIWI 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055825|ref|XP_002298672.1| predicted protein [Populus trichocarpa] gi|222845930|gb|EEE83477.1| predicted protein [Populus trichocarpa]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/222 (83%), Positives = 204/222 (91%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLH+PSKD GFVGCAL S MVRF KT D SW+HEVAISVK LKVQNWILPEMPGLI
Sbjct: 262 LEIRFLHNPSKDTGFVGCALTSNMVRFFKTPDESWSHEVAISVKPLKVQNWILPEMPGLI 321

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TDFL+SLDDRFLYF NWLHGD+RQYNIEDPKNPVL GQ+WVGGL +KGSPVVA  +DG+ 
Sbjct: 322 TDFLLSLDDRFLYFVNWLHGDVRQYNIEDPKNPVLKGQVWVGGLIQKGSPVVAEGEDGKT 381

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
           +Q DVPE+QGHRLRGGPQMIQLSLDGKRLYVTNSLFS WD QFYPE+ EKGSHMLQIDV+
Sbjct: 382 WQYDVPEIQGHRLRGGPQMIQLSLDGKRLYVTNSLFSTWDRQFYPEVVEKGSHMLQIDVD 441

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           +EKGG+AINPN+FVDF +EPDGP+LAHEMRYPGGDCTSDIWI
Sbjct: 442 TEKGGLAINPNYFVDFASEPDGPSLAHEMRYPGGDCTSDIWI 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129200|ref|XP_002328915.1| predicted protein [Populus trichocarpa] gi|222839345|gb|EEE77682.1| predicted protein [Populus trichocarpa]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/222 (83%), Positives = 203/222 (91%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLHDPSKD GFVGCAL S MVRF KT DGSW+HEVAISVK LKVQNWILPEMPGL+
Sbjct: 262 LEIRFLHDPSKDSGFVGCALTSNMVRFFKTPDGSWSHEVAISVKPLKVQNWILPEMPGLV 321

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TDFLISLDDRFLYF NWLHGD+RQY+IEDP+ PVL GQ+WVGGL +KGS VVA  +DG+ 
Sbjct: 322 TDFLISLDDRFLYFVNWLHGDVRQYSIEDPEKPVLKGQVWVGGLIQKGSSVVAEGEDGKT 381

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
           +Q DVPE+QGHRLRGGPQMIQLSLDGKRLYVTNSLFS WD QFYPEL EKGSHMLQIDV+
Sbjct: 382 WQYDVPEIQGHRLRGGPQMIQLSLDGKRLYVTNSLFSTWDRQFYPELMEKGSHMLQIDVD 441

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           +EKGG+AINPN+FVDF AEPDGP+LAHEMRYPGGDCTSDIWI
Sbjct: 442 TEKGGLAINPNYFVDFAAEPDGPSLAHEMRYPGGDCTSDIWI 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559184|ref|XP_002520613.1| selenium-binding protein, putative [Ricinus communis] gi|223540174|gb|EEF41749.1| selenium-binding protein, putative [Ricinus communis]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/222 (83%), Positives = 203/222 (91%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLHDPSKD GFVGCAL S MVRF KT DGSW+HEVAISVK LKV+NWILPEMPGLI
Sbjct: 254 LEIRFLHDPSKDTGFVGCALTSNMVRFFKTPDGSWSHEVAISVKPLKVKNWILPEMPGLI 313

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TDFLISLDDRFLYF NWLHGDIRQYNIED KNPVLTGQ+WVGGL +KGSP++  T+D   
Sbjct: 314 TDFLISLDDRFLYFVNWLHGDIRQYNIEDLKNPVLTGQVWVGGLLQKGSPIMVETEDRST 373

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
           +Q+DVPE+QG+RLRGGPQMIQLSLDGKRLYVTNSLFS WD QFYPEL EKGSHMLQIDV+
Sbjct: 374 WQADVPEIQGNRLRGGPQMIQLSLDGKRLYVTNSLFSTWDRQFYPELVEKGSHMLQIDVD 433

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           +EKGG+ +NPNFFVDF AEPDGP+LAHEMRYPGGDCTSDIWI
Sbjct: 434 TEKGGLKVNPNFFVDFAAEPDGPSLAHEMRYPGGDCTSDIWI 475

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15485716|emb|CAC67491.1| selenium binding protein [Lotus japonicus] gi|15485718|emb|CAC67492.1| selenium binding protein [Lotus japonicus]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/222 (82%), Positives = 204/222 (91%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLHDP+KD GFVG AL+S M+RF KTQDGSW+HE+AI VK LKVQNWILPEMPGLI
Sbjct: 266 LEIRFLHDPAKDTGFVGSALSSNMIRFFKTQDGSWSHELAIPVKPLKVQNWILPEMPGLI 325

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TDFLISLDDRFLYF NWLHGDIRQYNIED KNPVLTGQ+WVGGL +KGSPV A+ +DG+ 
Sbjct: 326 TDFLISLDDRFLYFVNWLHGDIRQYNIEDLKNPVLTGQLWVGGLIQKGSPVAAIGEDGKT 385

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
           +QSDVPE+QG +LRGGPQMIQL+LDGKRLYVTNSLFSAWD QFYP L EKGSH+LQIDV+
Sbjct: 386 WQSDVPEIQGQKLRGGPQMIQLTLDGKRLYVTNSLFSAWDKQFYPGLVEKGSHILQIDVD 445

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           +EKGG+ INPNFFVDF AEPDGPALAHEMRYPGGDCTSDIWI
Sbjct: 446 TEKGGLKINPNFFVDFGAEPDGPALAHEMRYPGGDCTSDIWI 487

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433514|ref|XP_002267004.1| PREDICTED: selenium-binding protein 1 [Vitis vinifera] gi|298205245|emb|CBI17304.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/222 (81%), Positives = 203/222 (91%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLHDPSKD GFVGCAL S MVRF KT DGSW+HEVAISVK LKVQNWILP+MP LI
Sbjct: 252 LEIRFLHDPSKDTGFVGCALTSNMVRFFKTPDGSWSHEVAISVKPLKVQNWILPDMPSLI 311

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TDFLISLDDR+LY +NWLHGD+RQYNIEDPKNPVLTGQ+WVGGL +KGSP+VA+ +DG  
Sbjct: 312 TDFLISLDDRYLYLANWLHGDVRQYNIEDPKNPVLTGQVWVGGLIQKGSPIVALAEDGTT 371

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
           +QS+VPEVQG RLRGGPQMIQLSLDGKRLYVTNSLFS WD QFYP+L  +GSHMLQIDV+
Sbjct: 372 WQSEVPEVQGKRLRGGPQMIQLSLDGKRLYVTNSLFSTWDHQFYPDLPREGSHMLQIDVD 431

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           +EKGG+ INPNFFVDF +EPDGP+LAHEMRYPGGDCTSDIW+
Sbjct: 432 TEKGGLVINPNFFVDFGSEPDGPSLAHEMRYPGGDCTSDIWV 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15485722|emb|CAC67472.1| selenium binding protein [Glycine max]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/222 (81%), Positives = 203/222 (91%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           +++RFLHDPSKD GFVGCAL+S MVRF + +D SW+HEVAISVK LKVQNWILPEMPGLI
Sbjct: 257 LEVRFLHDPSKDTGFVGCALSSNMVRFLRPRDESWSHEVAISVKPLKVQNWILPEMPGLI 316

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TDFLISLDDRFLYF NWLHGDIRQYNIEDPKNPVLTGQ+WVG  F+KGSP+VA+T+DG  
Sbjct: 317 TDFLISLDDRFLYFVNWLHGDIRQYNIEDPKNPVLTGQVWVGDYFQKGSPIVAITEDGNT 376

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
           +QSDVP++QG++L  GPQMIQLSLDGKR+YVTNSLFSAWD QFYPEL EKGSHMLQIDV+
Sbjct: 377 WQSDVPDIQGNKLSAGPQMIQLSLDGKRVYVTNSLFSAWDKQFYPELVEKGSHMLQIDVD 436

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           +E GG+ INPNFFVDF AEP GPALAHEMRYPGGDCTSDIWI
Sbjct: 437 TENGGLKINPNFFVDFGAEPGGPALAHEMRYPGGDCTSDIWI 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15485720|emb|CAC67501.1| selenium binding protein [Medicago sativa]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/222 (81%), Positives = 201/222 (90%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLHDP+KD GFVG AL S M+RF KTQDGSWNHE+ ISV+ LKVQNW LPEMPGLI
Sbjct: 267 LEIRFLHDPAKDTGFVGSALTSNMIRFFKTQDGSWNHEIVISVEPLKVQNWFLPEMPGLI 326

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TDFLISLDDRFLYF NWLHGDIRQYNIED KNP LTGQ+W GGL +KGSPVVAV DDG+ 
Sbjct: 327 TDFLISLDDRFLYFVNWLHGDIRQYNIEDVKNPKLTGQVWAGGLIQKGSPVVAVKDDGET 386

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
           +QSDVPE+QG +LRGGPQMIQLSLDGKRLYVTNSLFSAWD QFYP+L E+GSH+LQIDV+
Sbjct: 387 WQSDVPEIQGKKLRGGPQMIQLSLDGKRLYVTNSLFSAWDKQFYPKLVEQGSHILQIDVD 446

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           +E GG+ INPNFFVDF AEPDGP+LAHEMRYPGGDCTSDIWI
Sbjct: 447 TENGGLKINPNFFVDFGAEPDGPSLAHEMRYPGGDCTSDIWI 488

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512429|ref|XP_003524921.1| PREDICTED: selenium-binding protein 2-like [Glycine max]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/222 (81%), Positives = 201/222 (90%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           +++RFLHDPSKD GFVGCAL+S MVRF KT+D SW+HEVAISVK LKVQNWILPEMPGLI
Sbjct: 267 LEVRFLHDPSKDTGFVGCALSSNMVRFFKTEDESWSHEVAISVKPLKVQNWILPEMPGLI 326

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TDFLISLDDRFLYF NWLHGDIRQYNIEDPKNPV TGQ+WVGGL +KGSP+VA+T+DG  
Sbjct: 327 TDFLISLDDRFLYFVNWLHGDIRQYNIEDPKNPVRTGQVWVGGLLQKGSPIVAITEDGNT 386

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
           + SDVP++ G++LR GPQMIQLSLDGKRLYVTNSLFSAWD QFYPEL EKGSHMLQIDV+
Sbjct: 387 WHSDVPDILGNKLRAGPQMIQLSLDGKRLYVTNSLFSAWDKQFYPELVEKGSHMLQIDVD 446

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           +E GG+ INPNFFVDF AEP G  LAHEMRYPGGDCTSDIWI
Sbjct: 447 TENGGLKINPNFFVDFGAEPGGSCLAHEMRYPGGDCTSDIWI 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568342|ref|XP_003552370.1| PREDICTED: selenium-binding protein 1-like [Glycine max]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/222 (81%), Positives = 203/222 (91%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
           ++IRFLHDP+KD GFVG AL S M+RF KTQD SW+HEVAISVK LKVQNWILPEMPGLI
Sbjct: 263 LEIRFLHDPAKDTGFVGSALTSNMIRFFKTQDESWSHEVAISVKPLKVQNWILPEMPGLI 322

Query: 61  TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
           TDFLISLDDRFLYF NWLHGDIRQYNIED KNP LTGQ+WVGGL +KGSPVVA+TDDG+ 
Sbjct: 323 TDFLISLDDRFLYFVNWLHGDIRQYNIEDVKNPKLTGQVWVGGLIQKGSPVVAITDDGET 382

Query: 121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
           +Q++VPE+QG++LRGGPQMIQLSLDGKRLY TNSLFS WD QFYPEL +KGSH++QIDV+
Sbjct: 383 WQAEVPEIQGNKLRGGPQMIQLSLDGKRLYATNSLFSTWDKQFYPELVQKGSHIIQIDVD 442

Query: 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           +EKGG+ INPNFFVDF  EPDGP+LAHEMRYPGGDCTSDIWI
Sbjct: 443 TEKGGLKINPNFFVDFGTEPDGPSLAHEMRYPGGDCTSDIWI 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2129351	490	SBP1 "selenium-binding protein	1.0	0.453	0.788	2.2e-98
TAIR|locus:2129356	487	SBP2 "selenium-binding protein	1.0	0.455	0.779	2e-97
TAIR|locus:2095183	480	SBP3 "selenium-binding protein	1.0	0.462	0.770	7.6e-96
UNIPROTKB|Q13228	472	SELENBP1 "Selenium-binding pro	1.0	0.470	0.635	1.5e-76
UNIPROTKB|F1ST01	472	SELENBP1 "Uncharacterized prot	1.0	0.470	0.639	1.9e-76
UNIPROTKB|F1PNH6	502	SELENBP1 "Uncharacterized prot	1.0	0.442	0.639	3.9e-76
ZFIN|ZDB-GENE-040426-1436	473	selenbp1 "selenium binding pro	0.981	0.460	0.637	3.9e-76
RGD|620571	472	Selenbp1 "selenium binding pro	1.0	0.470	0.648	8.1e-76
UNIPROTKB|Q8VIF7	472	Selenbp1 "Selenium-binding pro	1.0	0.470	0.648	8.1e-76
UNIPROTKB|Q2KJ32	472	SELENBP1 "Selenium-binding pro	1.0	0.470	0.639	1e-75

TAIR|locus:2129351 SBP1 "selenium-binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 977 (349.0 bits), Expect = 2.2e-98, P = 2.2e-98
 Identities = 175/222 (78%), Positives = 198/222 (89%)

Query:     1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
             ++IRFLHDPSKD GFVG AL+S M+RF K  D +W+HEV ISVK LKV+NWILPEMPGLI
Sbjct:   269 LEIRFLHDPSKDTGFVGSALSSNMIRFFKNSDETWSHEVVISVKPLKVENWILPEMPGLI 328

Query:    61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
             TDFLISLDDRF+YF NWLHGDIRQYNIEDPKNPVLTGQIWVGGL +KGSPV AV +DG  
Sbjct:   329 TDFLISLDDRFIYFVNWLHGDIRQYNIEDPKNPVLTGQIWVGGLLQKGSPVKAVGEDGNT 388

Query:   121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
             +Q +VP+++G  LRGGPQMIQLSLDGKRLY TNSLFSAWD QFYPE+ EKGSH++QIDV+
Sbjct:   389 FQFEVPQIKGKSLRGGPQMIQLSLDGKRLYATNSLFSAWDRQFYPEIMEKGSHIIQIDVD 448

Query:   181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
             +EKGG+ INP+FFVDF  EPDGP+LAHEMRYPGGDCTSDIWI
Sbjct:   449 TEKGGLTINPDFFVDFGDEPDGPSLAHEMRYPGGDCTSDIWI 490

GO:0005634 "nucleus" evidence=ISM

GO:0008430 "selenium binding" evidence=IEA;ISS

GO:0046686 "response to cadmium ion" evidence=IEP;IDA

GO:0000103 "sulfate assimilation" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IDA

GO:0071291 "cellular response to selenium ion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2129356 SBP2 "selenium-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
 Identities = 173/222 (77%), Positives = 195/222 (87%)

Query:     1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
             ++IRFLHDPSKD G+VG AL+S M+RF K  D +W+HEV ISVK LKV+NWILPEMPGLI
Sbjct:   266 LEIRFLHDPSKDTGYVGSALSSNMIRFFKNSDDTWSHEVVISVKPLKVENWILPEMPGLI 325

Query:    61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
             TDFLISLDDRF YF NWLHGDIRQYNIEDPKNPVLTGQIWVGGL +KGSP  AV +DG  
Sbjct:   326 TDFLISLDDRFFYFVNWLHGDIRQYNIEDPKNPVLTGQIWVGGLLQKGSPYKAVGEDGNT 385

Query:   121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
             YQ DVP+++G  LR GPQMIQLSLDGKRLY TNSLFSAWD QFYPE+ EKGSH++QIDV+
Sbjct:   386 YQFDVPQIKGKSLRAGPQMIQLSLDGKRLYATNSLFSAWDRQFYPEIMEKGSHIIQIDVD 445

Query:   181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
             ++KGG+ +NP+FFVDF  EPDGPALAHEMRYPGGDCTSDIWI
Sbjct:   446 TDKGGLTLNPDFFVDFGDEPDGPALAHEMRYPGGDCTSDIWI 487

GO:0008430 "selenium binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0010197 "polar nucleus fusion" evidence=IMP

TAIR|locus:2095183 SBP3 "selenium-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
 Identities = 171/222 (77%), Positives = 198/222 (89%)

Query:     1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
             +++RFLH+P K  GF GCAL+ST+VRF K  D +W+HEVAISV+ LKV+NWILPEMPGLI
Sbjct:   259 LEVRFLHEPDKATGFAGCALSSTLVRFFKNDDETWSHEVAISVEPLKVENWILPEMPGLI 318

Query:    61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
             TDFLISLDDRFLY SNWLHGDIRQYNIEDPK PVLTGQI VGGL +KGS V+A+ ++G+ 
Sbjct:   319 TDFLISLDDRFLYCSNWLHGDIRQYNIEDPKTPVLTGQIHVGGLVQKGSLVLALGEEGKA 378

Query:   121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
             +Q DVP+++G RLRGGPQM QLSLDGKRLYVTNSLFS WD QFYPEL EKGSHMLQIDV+
Sbjct:   379 FQFDVPKIKGQRLRGGPQMFQLSLDGKRLYVTNSLFSVWDRQFYPELVEKGSHMLQIDVD 438

Query:   181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
             ++KGG++INPNFFVDF  EPDGP+LAHEMRYPGGDCTSDIW+
Sbjct:   439 TDKGGLSINPNFFVDFGTEPDGPSLAHEMRYPGGDCTSDIWV 480

GO:0005634 "nucleus" evidence=ISM

GO:0008430 "selenium binding" evidence=IEA;ISS

UNIPROTKB|Q13228 SELENBP1 "Selenium-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 141/222 (63%), Positives = 174/222 (78%)

Query:     1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
             ++IRFLH+P    GFVGCAL+ST+ RF K + G+W+ E  I V   KV+ W+LPEMPGLI
Sbjct:   251 LEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKGWLLPEMPGLI 310

Query:    61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
             TD L+SLDDRFLYFSNWLHGD+RQY+I DP+ P LTGQ+++GG   KG PV  + D+   
Sbjct:   311 TDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELK 370

Query:   121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
              Q +   V+G R+ GGPQMIQLSLDGKRLY+T SL+SAWD QFYP+L  +GS MLQ+DV+
Sbjct:   371 SQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVD 430

Query:   181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
             + KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:   431 TVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472

GO:0008430 "selenium binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1ST01 SELENBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 142/222 (63%), Positives = 172/222 (77%)

Query:     1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
             ++IRFLH+P+   GFVGCAL S + RF K + G+W+ E  I V   KV+ W+LPEMP LI
Sbjct:   251 LEIRFLHNPAASQGFVGCALGSNIQRFYKNEGGTWSVEKVIQVPPKKVKGWMLPEMPSLI 310

Query:    61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
             TD L+SLDDRFLYFSNWLHGD+RQY+I DPK P LTGQ+++GG   KG PV  + D    
Sbjct:   311 TDILLSLDDRFLYFSNWLHGDLRQYDISDPKRPRLTGQLFLGGSIVKGGPVQVLEDQELK 370

Query:   121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
              Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP+L  +GS MLQIDV+
Sbjct:   371 SQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDLIREGSVMLQIDVD 430

Query:   181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
             +EKGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIW+
Sbjct:   431 TEKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 472

GO:0005730 "nucleolus" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

UNIPROTKB|F1PNH6 SELENBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 142/222 (63%), Positives = 173/222 (77%)

Query:     1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
             ++IRFLH+P    GFVGCAL+ST+ RF K Q G+W+ E  I V   KV+ W+LPEMPGLI
Sbjct:   281 LEIRFLHNPDAAQGFVGCALSSTIQRFYKNQGGTWSVEKVIQVPPKKVKGWMLPEMPGLI 340

Query:    61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
             TD L+SLDDRFLYFSNWLHGD+RQY+I DP+ P LTGQ+++GG   KG PV  + D    
Sbjct:   341 TDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDQELK 400

Query:   121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
              Q +   V+G ++ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP+L  +GS MLQIDV+
Sbjct:   401 SQPEPLVVKGKKVPGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDLIREGSVMLQIDVD 460

Query:   181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
             + KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIW+
Sbjct:   461 TVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 502

GO:0008430 "selenium binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1436 selenbp1 "selenium binding protein 1" [Danio rerio (taxid:7955)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 144/226 (63%), Positives = 174/226 (76%)

Query:     1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
             +++RFLHDP+   GFVGCAL ST+ RF KT  G W  E  I V S KV+ W LP+MPGLI
Sbjct:   252 LEVRFLHDPAAAEGFVGCALQSTVFRFYKTPKGDWAAEKVIKVPSKKVEGWALPDMPGLI 311

Query:    61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTD---D 117
             TD LISLDDRFLYFSNWLHGDIRQY+I D KNP + GQ+++GG   K  PV  + D   D
Sbjct:   312 TDILISLDDRFLYFSNWLHGDIRQYDITDRKNPRMVGQVFLGGSVLKDGPVKVLEDKELD 371

Query:   118 GQPYQSDVPEV-QGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQ 176
              QP     P + +G R++GGPQM+QLSLDGKRLYVT SL+SAWD QFYP+L ++GS M+Q
Sbjct:   372 SQP----TPRILKGKRVQGGPQMLQLSLDGKRLYVTTSLYSAWDKQFYPDLIKEGSVMMQ 427

Query:   177 IDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
             IDVN++ GG+ +N NF VDF AEP+GPALAHE+RYPGGDCTSDIW+
Sbjct:   428 IDVNTDTGGLKLNENFLVDFGAEPEGPALAHELRYPGGDCTSDIWL 473

GO:0008430 "selenium binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

RGD|620571 Selenbp1 "selenium binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 144/222 (64%), Positives = 170/222 (76%)

Query:     1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
             ++IRFLHDP    GFVGCAL+S + RF K + G+W+ E  I V S KV+ W+LPEMPGLI
Sbjct:   251 LEIRFLHDPDATQGFVGCALSSNIQRFYKNEGGTWSVEKVIQVPSKKVKGWMLPEMPGLI 310

Query:    61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
             TD L+SLDDRFLYFSNWLHGDIRQY+I +PK P LTGQI++GG   KG  V  + D    
Sbjct:   311 TDILLSLDDRFLYFSNWLHGDIRQYDISNPKKPRLTGQIFLGGSIVKGGSVQVLEDQELT 370

Query:   121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
              Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP L  +GS MLQIDV+
Sbjct:   371 CQPEPLVVKGKRVPGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPNLIREGSVMLQIDVD 430

Query:   181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
             +  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:   431 TANGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0005829 "cytosol" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0050873 "brown fat cell differentiation" evidence=ISO

UNIPROTKB|Q8VIF7 Selenbp1 "Selenium-binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 144/222 (64%), Positives = 170/222 (76%)

Query:     1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
             ++IRFLHDP    GFVGCAL+S + RF K + G+W+ E  I V S KV+ W+LPEMPGLI
Sbjct:   251 LEIRFLHDPDATQGFVGCALSSNIQRFYKNEGGTWSVEKVIQVPSKKVKGWMLPEMPGLI 310

Query:    61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
             TD L+SLDDRFLYFSNWLHGDIRQY+I +PK P LTGQI++GG   KG  V  + D    
Sbjct:   311 TDILLSLDDRFLYFSNWLHGDIRQYDISNPKKPRLTGQIFLGGSIVKGGSVQVLEDQELT 370

Query:   121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
              Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP L  +GS MLQIDV+
Sbjct:   371 CQPEPLVVKGKRVPGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPNLIREGSVMLQIDVD 430

Query:   181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
             +  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:   431 TANGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472

GO:0008430 "selenium binding" evidence=IEA

UNIPROTKB|Q2KJ32 SELENBP1 "Selenium-binding protein 1" [Bos taurus (taxid:9913)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 142/222 (63%), Positives = 170/222 (76%)

Query:     1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLI 60
             ++IRFLH+P+ D GFVGCAL S + RF K Q G+W+ E  I V   KV+ WILPEMP LI
Sbjct:   251 LEIRFLHNPAADQGFVGCALGSNIQRFYKNQGGTWSVEKVIQVPPKKVKGWILPEMPSLI 310

Query:    61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 120
             TD L+SLDDRFLYFSNWLHGD+RQY+I DPK P L GQI++GG   KG PV  + D    
Sbjct:   311 TDILLSLDDRFLYFSNWLHGDLRQYDISDPKRPRLVGQIFLGGSIVKGGPVQVLEDQELK 370

Query:   121 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180
              Q +   V+G R+ GGPQMIQLSLDG RLYVT SL+SAWD QFYP+L  +GS MLQIDV+
Sbjct:   371 CQPEPLVVKGKRVAGGPQMIQLSLDGTRLYVTTSLYSAWDKQFYPDLIREGSVMLQIDVD 430

Query:   181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
             + +GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIW+
Sbjct:   431 TVRGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 472

GO:0016020 "membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23264	SEBP1_ARATH	No assigned EC number	0.7882	1.0	0.4530	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_I3319 hypothetical protein (484 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
pfam05694	461	pfam05694, SBP56, 56kDa selenium binding protein (	1e-130
pfam10282	344	pfam10282, Lactonase, Lactonase, 7-bladed beta-pro	0.003

>gnl|CDD|218697 pfam05694, SBP56, 56kDa selenium binding protein (SBP56)

 Score =  374 bits (962), Expect = e-130
 Identities = 128/229 (55%), Positives = 161/229 (70%), Gaps = 22/229 (9%)

Query: 1   MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEM---- 56
           +++RFLHDP+K  GFVGCAL+S++ R+ K  DG W  E  I + +  V+ WILP M    
Sbjct: 248 LEVRFLHDPTKAYGFVGCALSSSIWRWYKDDDGKWAAEKVIEIPAEPVEGWILPPMLKGF 307

Query: 57  ---PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVA 113
              P L+TD L+SLDDRFLY S W HGD+RQY+I DP NP LTGQ+ +GG+ R+      
Sbjct: 308 GAVPPLVTDILLSLDDRFLYVSCWGHGDLRQYDISDPFNPKLTGQVRLGGIIRRA----- 362

Query: 114 VTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSH 173
                       P V+G RL GGPQM+QLSLDGKRLYVTNSL+SAWD QFYP+  +KG  
Sbjct: 363 ----------PHPAVKGRRLNGGPQMVQLSLDGKRLYVTNSLYSAWDDQFYPDGVKKGGW 412

Query: 174 MLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222
           ML+IDV+ + GG++++PNFFVDF  EPDGPA AHE+R PGGDC+SD W 
Sbjct: 413 MLKIDVDPDNGGLSLDPNFFVDFGKEPDGPARAHEIRLPGGDCSSDSWC 461

This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport. Length = 461

>gnl|CDD|220674 pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 22/106 (20%)

Query: 9   PSKDIGFVGCALASTMVRFS-KTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDF---- 63
           P     +V   L+ST+   S     G++            +Q   +  +P   T      
Sbjct: 200 PDGKYAYVVNELSSTVTVLSYDPATGTFTE----------LQ--TVSTLPEDFTGTNGAA 247

Query: 64  --LISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLT--GQIWVGGLF 105
              IS D RFLY SN  H  I  + + D     LT   ++   G F
Sbjct: 248 AIRISPDGRFLYVSNRGHDSIAVFAV-DEAGGTLTLVERVSTEGDF 292

This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold. Length = 344

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	100.0
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	100.0
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	100.0
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.96
PRK11028	330	6-phosphogluconolactonase; Provisional	99.88
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.64
PRK11028	330	6-phosphogluconolactonase; Provisional	99.64
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.32
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.26
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.2
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.16
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.12
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.96
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.86
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.78
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.62
COG3391	381	Uncharacterized conserved protein [Function unknow	98.61
COG3391	381	Uncharacterized conserved protein [Function unknow	98.6
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	98.52
PRK02888	635	nitrous-oxide reductase; Validated	98.47
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.36
PRK02888	635	nitrous-oxide reductase; Validated	98.29
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.21
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.2
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.15
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.11
PRK04792	448	tolB translocation protein TolB; Provisional	97.87
PRK03629	429	tolB translocation protein TolB; Provisional	97.79
PRK02889	427	tolB translocation protein TolB; Provisional	97.71
PRK01029	428	tolB translocation protein TolB; Provisional	97.6
PRK02889	427	tolB translocation protein TolB; Provisional	97.54
PRK00178	430	tolB translocation protein TolB; Provisional	97.53
PRK04922	433	tolB translocation protein TolB; Provisional	97.52
PRK01742	429	tolB translocation protein TolB; Provisional	97.52
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.5
PRK04792	448	tolB translocation protein TolB; Provisional	97.46
PRK04922	433	tolB translocation protein TolB; Provisional	97.44
PRK00178	430	tolB translocation protein TolB; Provisional	97.41
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.4
PRK01029	428	tolB translocation protein TolB; Provisional	97.38
PRK03629	429	tolB translocation protein TolB; Provisional	97.37
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.35
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.35
PRK01742	429	tolB translocation protein TolB; Provisional	97.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.31
PRK05137	435	tolB translocation protein TolB; Provisional	97.31
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.26
PRK05137	435	tolB translocation protein TolB; Provisional	97.26
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.18
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.18
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.18
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.15
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.1
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.06
PRK04043	419	tolB translocation protein TolB; Provisional	97.04
KOG0266	456	consensus WD40 repeat-containing protein [General	96.89
KOG1539	910	consensus WD repeat protein [General function pred	96.75
KOG0639	705	consensus Transducin-like enhancer of split protei	96.73
KOG1273	405	consensus WD40 repeat protein [General function pr	96.72
PTZ00420	568	coronin; Provisional	96.7
PRK04043	419	tolB translocation protein TolB; Provisional	96.66
KOG0293	519	consensus WD40 repeat-containing protein [Function	96.66
KOG0266	456	consensus WD40 repeat-containing protein [General	96.49
PTZ00421	493	coronin; Provisional	96.41
PF08309	42	LVIVD: LVIVD repeat; InterPro: IPR013211 This repe	96.32
KOG0645	312	consensus WD40 repeat protein [General function pr	96.18
KOG2096	420	consensus WD40 repeat protein [General function pr	96.18
KOG0263	707	consensus Transcription initiation factor TFIID, s	96.1
KOG0315	311	consensus G-protein beta subunit-like protein (con	96.1
KOG0318	603	consensus WD40 repeat stress protein/actin interac	96.1
KOG2110	391	consensus Uncharacterized conserved protein, conta	96.06
KOG0772	641	consensus Uncharacterized conserved protein, conta	95.92
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.59
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.41
PTZ00420	568	coronin; Provisional	95.35
KOG2055	514	consensus WD40 repeat protein [General function pr	95.31
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	95.24
COG5276	370	Uncharacterized conserved protein [Function unknow	95.21
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.21
COG5276	370	Uncharacterized conserved protein [Function unknow	95.19
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.06
KOG2110	391	consensus Uncharacterized conserved protein, conta	95.02
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	94.9
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	94.89
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.62
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.57
KOG0293	519	consensus WD40 repeat-containing protein [Function	94.55
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	94.46
COG4946	668	Uncharacterized protein related to the periplasmic	94.41
KOG2096	420	consensus WD40 repeat protein [General function pr	94.3
PTZ00421	493	coronin; Provisional	94.15
KOG1407	313	consensus WD40 repeat protein [Function unknown]	94.14
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.85
KOG0772	641	consensus Uncharacterized conserved protein, conta	93.83
KOG2315	566	consensus Predicted translation initiation factor	93.72
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	93.69
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.48
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.48
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.36
KOG0771	398	consensus Prolactin regulatory element-binding pro	93.34
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	93.27
KOG0318	603	consensus WD40 repeat stress protein/actin interac	93.17
KOG1274	933	consensus WD40 repeat protein [General function pr	93.02
KOG2055	514	consensus WD40 repeat protein [General function pr	92.99
KOG0275	508	consensus Conserved WD40 repeat-containing protein	92.96
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	92.83
KOG0973	942	consensus Histone transcription regulator HIRA, WD	92.75
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	92.59
PRK13616	591	lipoprotein LpqB; Provisional	92.56
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	92.52
KOG0973	942	consensus Histone transcription regulator HIRA, WD	92.23
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.12
KOG2139	445	consensus WD40 repeat protein [General function pr	91.88
KOG0643	327	consensus Translation initiation factor 3, subunit	91.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	91.43
KOG0771	398	consensus Prolactin regulatory element-binding pro	91.35
KOG1274	933	consensus WD40 repeat protein [General function pr	91.26
KOG0289	506	consensus mRNA splicing factor [General function p	91.08
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	91.02
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.7
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	90.31
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	90.16
PRK13616	591	lipoprotein LpqB; Provisional	89.92
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	89.64
KOG1539	910	consensus WD repeat protein [General function pred	89.52
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	89.47
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	89.4
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	89.3
KOG1407	313	consensus WD40 repeat protein [Function unknown]	89.22
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	89.11
PLN00181	793	protein SPA1-RELATED; Provisional	88.96
KOG0315	311	consensus G-protein beta subunit-like protein (con	88.93
COG4946	668	Uncharacterized protein related to the periplasmic	88.77
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	88.61
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	88.5
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	88.43
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.37
KOG1063	764	consensus RNA polymerase II elongator complex, sub	88.19
KOG0286	343	consensus G-protein beta subunit [General function	88.15
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.07
KOG0639	705	consensus Transducin-like enhancer of split protei	87.96
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	87.55
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	87.51
KOG0282	503	consensus mRNA splicing factor [Function unknown]	87.46
PLN00181	793	protein SPA1-RELATED; Provisional	87.26
KOG2048	691	consensus WD40 repeat protein [General function pr	87.17
KOG0645	312	consensus WD40 repeat protein [General function pr	87.1
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	87.02
KOG2106	626	consensus Uncharacterized conserved protein, conta	86.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	86.87
KOG0296	399	consensus Angio-associated migratory cell protein	86.81
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	86.73
KOG2314	698	consensus Translation initiation factor 3, subunit	86.2
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	85.85
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	85.79
KOG0640	430	consensus mRNA cleavage stimulating factor complex	85.65
KOG2048	691	consensus WD40 repeat protein [General function pr	85.61
KOG0288	459	consensus WD40 repeat protein TipD [General functi	85.21
KOG0646	476	consensus WD40 repeat protein [General function pr	84.93
KOG2139	445	consensus WD40 repeat protein [General function pr	84.73
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	84.53
KOG0279	315	consensus G protein beta subunit-like protein [Sig	84.17
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	84.15
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	84.09
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	84.02
KOG0647	347	consensus mRNA export protein (contains WD40 repea	83.92
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	83.34
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	82.88
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	82.84
KOG2321	703	consensus WD40 repeat protein [General function pr	82.7
KOG3881	412	consensus Uncharacterized conserved protein [Funct	82.61
KOG0289	506	consensus mRNA splicing factor [General function p	82.56
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	82.39
KOG3881	412	consensus Uncharacterized conserved protein [Funct	81.89
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	80.92
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	80.75
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	80.43
KOG0640	430	consensus mRNA cleavage stimulating factor complex	80.31
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	80.02

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-82  Score=590.02  Aligned_cols=222  Identities=71%  Similarity=1.262  Sum_probs=219.4

Q ss_pred             CeEeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         1 levr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      |||||+|+|+...+||.|+|+|.|++|++..+++|.++.+|++++.++++|.+++||++++||.||+|+||||||||.||
T Consensus       255 leiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~~~visvp~~kv~~w~~~eMP~LITDilISmDDRFLYvs~WLHG  334 (476)
T KOG0918|consen  255 LEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSAEVVISVPPLKVENWILPEMPGLITDILISLDDRFLYVSNWLHG  334 (476)
T ss_pred             EEeeeccCCCcccceeeeeccCCceeeeeccccccceeEEEecCccccccccCcccchhhheeEEeecCcEEEEEeeeec
Confidence            79999999999999999999999999999767999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccc
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWD  160 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd  160 (222)
                      +|+||+|+||.+++|.+||++||++.++++|+|+++|+++.||+.++|+|++++|||+|||||.|||||||||||||+||
T Consensus       335 DirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~~ea~~vKGrkl~GGPQMlQLSLDGKRLYVt~SLys~WD  414 (476)
T KOG0918|consen  335 DIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQPEALYVKGRKLRGGPQMLQLSLDGKRLYVTNSLYSAWD  414 (476)
T ss_pred             ceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCCCccceecCccccCCceeEEeccCCcEEEEEchhhhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCCCcCccccC
Q 027522          161 CQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI  222 (222)
Q Consensus       161 ~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~gd~~sd~~~  222 (222)
                      +|||||+++++.+|+++|||+++|+|++|++|+|||++||+||+||||||||||||||||||
T Consensus       415 ~QFYPE~v~~G~~miqidvdt~~g~~~lN~~flvDf~~ep~gPsL~hemRypggdCtsdiwi  476 (476)
T KOG0918|consen  415 RQFYPELVSKGSHMIQIDVDTVKGGLSLNPDFLVDFGKEPDGPSLAHEMRYPGGDCTSDIWI  476 (476)
T ss_pred             hhhCHHHHhcCceEEEEeeeccCCceeeCccceEEccCCCCCcchhhhcccCCCcccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999997

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=100.00  E-value=2.3e-76  Score=555.01  Aligned_cols=207  Identities=67%  Similarity=1.232  Sum_probs=141.0

Q ss_pred             CeEeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCC-------CCceeEEEEcCCCCEEE
Q 027522            1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEM-------PGLITDFLISLDDRFLY   73 (222)
Q Consensus         1 levr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~-------~~~~adI~iSpDgrfLY   73 (222)
                      |||||+|+|+..++||.|+|+|+|++|+++++|+|++++||+++++++++|.+|+|       |++++||.||+|+||||
T Consensus       248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY  327 (461)
T PF05694_consen  248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY  327 (461)
T ss_dssp             EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred             EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence            79999999999999999999999999999878999999999999999999999999       99999999999999999


Q ss_pred             EEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           74 FSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        74 vSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ||||+||+|+||||+||.+|||+++|++||++.++               +.+.++|++++|||||++||+|||||||||
T Consensus       328 vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~---------------~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  328 VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKG---------------DHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B-----------------TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccC---------------CCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            99999999999999999999999999999998653               235578999999999999999999999999


Q ss_pred             CCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCCCcCccccC
Q 027522          154 SLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI  222 (222)
Q Consensus       154 sl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~gd~~sd~~~  222 (222)
                      ||||+||+||||++++++.+|+++|+|+++|+|+++++|+|||++||+||+|||||||||||||||||+
T Consensus       393 SLys~WD~qfYP~~~~~g~~m~~iDvd~~~Ggl~l~~~F~VDFg~ep~Gp~raHe~R~pgGDctSDi~~  461 (461)
T PF05694_consen  393 SLYSAWDKQFYPDGVKNGSWMLKIDVDTENGGLTLDEDFLVDFGKEPDGPARAHEMRYPGGDCTSDIWC  461 (461)
T ss_dssp             ---HHHHHHHSTT------EEEEEEE-TT-S-EEEEEEEEEE-TT-----SEEEEEEETT--TTT---S
T ss_pred             ecccccccccCCCccccccEEEEEEecCCCCceeeCccceecccccccccccceeeecCCCCccccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999997

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-33  Score=259.24  Aligned_cols=133  Identities=21%  Similarity=0.307  Sum_probs=116.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ++|||++++||++|||+|||.++.|+. .|+++..|+++++|++|+|.      +.+|+|+||+||||||||||+|++|+
T Consensus       196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~------~~~aaIhis~dGrFLYasNRg~dsI~  269 (346)
T COG2706         196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT------NWAAAIHISPDGRFLYASNRGHDSIA  269 (346)
T ss_pred             EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC------CceeEEEECCCCCEEEEecCCCCeEE
Confidence            799999999999999999999999974 58999999999999999987      78899999999999999999999999


Q ss_pred             EEEecCCCCCeE--EEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522           84 QYNIEDPKNPVL--TGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC  161 (222)
Q Consensus        84 vf~i~d~~~~~L--~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~  161 (222)
                      +|.|+ +..++|  ++.+++                           .|..    ||+|.|+++|++|+|||        
T Consensus       270 ~f~V~-~~~g~L~~~~~~~t---------------------------eg~~----PR~F~i~~~g~~Liaa~--------  309 (346)
T COG2706         270 VFSVD-PDGGKLELVGITPT---------------------------EGQF----PRDFNINPSGRFLIAAN--------  309 (346)
T ss_pred             EEEEc-CCCCEEEEEEEecc---------------------------CCcC----CccceeCCCCCEEEEEc--------
Confidence            99995 455554  445544                           3566    99999999999999999        


Q ss_pred             ccccccccCCcEEEEEEeeCCCCCeeecc
Q 027522          162 QFYPELKEKGSHMLQIDVNSEKGGMAINP  190 (222)
Q Consensus       162 Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~  190 (222)
                      |.     ||+.++|+|  |.+||.|++-.
T Consensus       310 q~-----sd~i~vf~~--d~~TG~L~~~~  331 (346)
T COG2706         310 QK-----SDNITVFER--DKETGRLTLLG  331 (346)
T ss_pred             cC-----CCcEEEEEE--cCCCceEEecc
Confidence            87     777777777  88999997443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.96  E-value=4.8e-28  Score=219.07  Aligned_cols=134  Identities=25%  Similarity=0.365  Sum_probs=110.3

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeC-CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d-~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ++|||+++++||+|||+++|.+|.++ ++|+++..|.+++.|..+.+.      +.+++|+|||||||||||||++++|+
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~i~ispdg~~lyvsnr~~~sI~  270 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE------NAPAEIAISPDGRFLYVSNRGSNSIS  270 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS------SSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc------CCceeEEEecCCCEEEEEeccCCEEE
Confidence            79999999999999999999999997 678999999999888766654      57899999999999999999999999


Q ss_pred             EEEecC-CCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522           84 QYNIED-PKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ  162 (222)
Q Consensus        84 vf~i~d-~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q  162 (222)
                      +|+++. .+++++++.++++                           |+.    ||+|++||||++|||||        |
T Consensus       271 vf~~d~~~g~l~~~~~~~~~---------------------------G~~----Pr~~~~s~~g~~l~Va~--------~  311 (345)
T PF10282_consen  271 VFDLDPATGTLTLVQTVPTG---------------------------GKF----PRHFAFSPDGRYLYVAN--------Q  311 (345)
T ss_dssp             EEEECTTTTTEEEEEEEEES---------------------------SSS----EEEEEE-TTSSEEEEEE--------T
T ss_pred             EEEEecCCCceEEEEEEeCC---------------------------CCC----ccEEEEeCCCCEEEEEe--------c
Confidence            999943 3455666777764                           555    99999999999999999        7


Q ss_pred             cccccccCCcEEEEEEeeCCCCCeeecc
Q 027522          163 FYPELKEKGSHMLQIDVNSEKGGMAINP  190 (222)
Q Consensus       163 ~yp~~~s~~~~i~~~dvd~~~G~l~~~~  190 (222)
                      .     ++++.+|  ++|+++|.|+...
T Consensus       312 ~-----s~~v~vf--~~d~~tG~l~~~~  332 (345)
T PF10282_consen  312 D-----SNTVSVF--DIDPDTGKLTPVG  332 (345)
T ss_dssp             T-----TTEEEEE--EEETTTTEEEEEE
T ss_pred             C-----CCeEEEE--EEeCCCCcEEEec
Confidence            6     5555555  5588999997544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.88  E-value=1.9e-21  Score=172.24  Aligned_cols=143  Identities=15%  Similarity=0.223  Sum_probs=110.2

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      .++|||+|+++||+||++++|.+|..+. +|+++..+.+...|..+.+.      ..+++|++|||||||||+||++++|
T Consensus       179 ~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~i~~~pdg~~lyv~~~~~~~I  252 (330)
T PRK11028        179 HMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT------RWAADIHITPDGRHLYACDRTASLI  252 (330)
T ss_pred             eEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC------ccceeEEECCCCCEEEEecCCCCeE
Confidence            3799999999999999999999999863 57787777776655544332      4567999999999999999999999


Q ss_pred             EEEEecCCC-CCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522           83 RQYNIEDPK-NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC  161 (222)
Q Consensus        83 ~vf~i~d~~-~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~  161 (222)
                      ++|+++..+ ..++++.+.+                            |..    ||.|+++|||++|||||        
T Consensus       253 ~v~~i~~~~~~~~~~~~~~~----------------------------~~~----p~~~~~~~dg~~l~va~--------  292 (330)
T PRK11028        253 SVFSVSEDGSVLSFEGHQPT----------------------------ETQ----PRGFNIDHSGKYLIAAG--------  292 (330)
T ss_pred             EEEEEeCCCCeEEEeEEEec----------------------------ccc----CCceEECCCCCEEEEEE--------
Confidence            999995432 3455666665                            333    99999999999999999        


Q ss_pred             ccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCC
Q 027522          162 QFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPD  201 (222)
Q Consensus       162 Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~  201 (222)
                      |.     ++.+.++++  |.++|.|+....+.+  +..|.
T Consensus       293 ~~-----~~~v~v~~~--~~~~g~l~~~~~~~~--g~~P~  323 (330)
T PRK11028        293 QK-----SHHISVYEI--DGETGLLTELGRYAV--GQGPM  323 (330)
T ss_pred             cc-----CCcEEEEEE--cCCCCcEEEcccccc--CCCce
Confidence            65     444555544  778999987776665  44443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.64  E-value=3.5e-14  Score=128.75  Aligned_cols=153  Identities=18%  Similarity=0.280  Sum_probs=105.9

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ..|+|+|+++||.+-=...|.+|..+. .++++....+.+++.           +.+..|.+||||+++||.|-..++|.
T Consensus       149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G-----------~GPRh~~f~pdg~~~Yv~~e~s~~v~  217 (345)
T PF10282_consen  149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG-----------SGPRHLAFSPDGKYAYVVNELSNTVS  217 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT-----------SSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC-----------CCCcEEEEcCCcCEEEEecCCCCcEE
Confidence            578999999999987778899999864 346777666665531           45799999999999999999999999


Q ss_pred             EEEecC-CCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522           84 QYNIED-PKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ  162 (222)
Q Consensus        84 vf~i~d-~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q  162 (222)
                      +|+++. .+..+.++.+.+..                    .  ...|..   .|..+++|||||+|||+|        .
T Consensus       218 v~~~~~~~g~~~~~~~~~~~~--------------------~--~~~~~~---~~~~i~ispdg~~lyvsn--------r  264 (345)
T PF10282_consen  218 VFDYDPSDGSLTEIQTISTLP--------------------E--GFTGEN---APAEIAISPDGRFLYVSN--------R  264 (345)
T ss_dssp             EEEEETTTTEEEEEEEEESCE--------------------T--TSCSSS---SEEEEEE-TTSSEEEEEE--------C
T ss_pred             EEeecccCCceeEEEEeeecc--------------------c--cccccC---CceeEEEecCCCEEEEEe--------c
Confidence            999963 23334445555421                    1  012321   399999999999999999        4


Q ss_pred             cccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeec-CCCC
Q 027522          163 FYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRY-PGGD  215 (222)
Q Consensus       163 ~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~-~~gd  215 (222)
                             ..++|..+++|+.+|.|++-+.+..  +    | ..|+.|.+ |.|+
T Consensus       265 -------~~~sI~vf~~d~~~g~l~~~~~~~~--~----G-~~Pr~~~~s~~g~  304 (345)
T PF10282_consen  265 -------GSNSISVFDLDPATGTLTLVQTVPT--G----G-KFPRHFAFSPDGR  304 (345)
T ss_dssp             -------TTTEEEEEEECTTTTTEEEEEEEEE--S----S-SSEEEEEE-TTSS
T ss_pred             -------cCCEEEEEEEecCCCceEEEEEEeC--C----C-CCccEEEEeCCCC
Confidence                   3556666677889999986555443  1    1 24666766 4443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.64  E-value=1.6e-14  Score=128.11  Aligned_cols=138  Identities=14%  Similarity=0.213  Sum_probs=94.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEE--EEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHE--VAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~--q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      .+++|+|+++||.+..+.+|.+|..+.+|.+...  ..+.+++    |       ..+..|.+||||++|||+|.+.++|
T Consensus       131 ~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~----g-------~~p~~~~~~pdg~~lyv~~~~~~~v  199 (330)
T PRK11028        131 ANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE----G-------AGPRHMVFHPNQQYAYCVNELNSSV  199 (330)
T ss_pred             eEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC----C-------CCCceEEECCCCCEEEEEecCCCEE
Confidence            4689999999999999999999998755655422  1223322    1       2357899999999999999999999


Q ss_pred             EEEEecCC-CCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522           83 RQYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC  161 (222)
Q Consensus        83 ~vf~i~d~-~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~  161 (222)
                      .+|+++.. +..+++..+...                    |... .++++    |..+.++|||++|||+|        
T Consensus       200 ~v~~~~~~~~~~~~~~~~~~~--------------------p~~~-~~~~~----~~~i~~~pdg~~lyv~~--------  246 (330)
T PRK11028        200 DVWQLKDPHGEIECVQTLDMM--------------------PADF-SDTRW----AADIHITPDGRHLYACD--------  246 (330)
T ss_pred             EEEEEeCCCCCEEEEEEEecC--------------------CCcC-CCCcc----ceeEEECCCCCEEEEec--------
Confidence            99999642 233444444321                    1100 01233    77899999999999999        


Q ss_pred             ccccccccCCcEEEEEEeeCCCCCeeecccee
Q 027522          162 QFYPELKEKGSHMLQIDVNSEKGGMAINPNFF  193 (222)
Q Consensus       162 Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~  193 (222)
                      +.       ..+|..++++.+++.+++...+.
T Consensus       247 ~~-------~~~I~v~~i~~~~~~~~~~~~~~  271 (330)
T PRK11028        247 RT-------ASLISVFSVSEDGSVLSFEGHQP  271 (330)
T ss_pred             CC-------CCeEEEEEEeCCCCeEEEeEEEe
Confidence            43       34444456676767776655544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.32  E-value=2.1e-10  Score=106.34  Aligned_cols=165  Identities=16%  Similarity=0.217  Sum_probs=110.0

Q ss_pred             EEEcCCCCeEEEEecc--CceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522            5 FLHDPSKDIGFVGCAL--ASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD   81 (222)
Q Consensus         5 ~afhP~g~~aYvv~EL--sstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s   81 (222)
                      ++++|+++++|+++|-  ...|..|+.|. +|+++.+-...++-            +.++-|.+|+||||||++|-..++
T Consensus        45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g------------~~p~yvsvd~~g~~vf~AnY~~g~  112 (346)
T COG2706          45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG------------SPPCYVSVDEDGRFVFVANYHSGS  112 (346)
T ss_pred             EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC------------CCCeEEEECCCCCEEEEEEccCce
Confidence            6899999999999999  67799999984 59998776655431            234899999999999999999999


Q ss_pred             EEEEEecCCCCCeEE-EEEEecceeec---------------CC-ceeeee---C-------CCCCCCCC-C-ccccCcc
Q 027522           82 IRQYNIEDPKNPVLT-GQIWVGGLFRK---------------GS-PVVAVT---D-------DGQPYQSD-V-PEVQGHR  132 (222)
Q Consensus        82 I~vf~i~d~~~~~L~-~~v~~gG~~~~---------------~~-~~~~~~---~-------~~~~~~p~-~-~~v~G~~  132 (222)
                      |++|.+.+.+.+..+ +.+.--|..+.               +. -|.++.   |       +|-+-.|. . ....|  
T Consensus       113 v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G--  190 (346)
T COG2706         113 VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG--  190 (346)
T ss_pred             EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC--
Confidence            999999654444332 43333222010               01 111110   0       22223331 1 22223  


Q ss_pred             cCCCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeecccee---EecCCCC
Q 027522          133 LRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFF---VDFEAEP  200 (222)
Q Consensus       133 ~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~---vdf~~~~  200 (222)
                        .|||+|.+.|+||+.|+.|        +-       +.+|.....|+..|+++.-+...   -||.+..
T Consensus       191 --~GPRHi~FHpn~k~aY~v~--------EL-------~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~  244 (346)
T COG2706         191 --AGPRHIVFHPNGKYAYLVN--------EL-------NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN  244 (346)
T ss_pred             --CCcceEEEcCCCcEEEEEe--------cc-------CCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence              3699999999999999999        54       66666666687888885333222   2776543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.26  E-value=1.2e-10  Score=108.29  Aligned_cols=100  Identities=12%  Similarity=0.015  Sum_probs=75.2

Q ss_pred             CCCeEEEEecc----CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC--------
Q 027522           10 SKDIGFVGCAL----ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW--------   77 (222)
Q Consensus        10 ~g~~aYvv~EL----sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR--------   77 (222)
                      +++++||.++-    .++|+++.-+   +++.+..|++..             .+..+ +|||||+|||+|-        
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~---~~~v~g~i~~G~-------------~P~~~-~spDg~~lyva~~~~~R~~~G   73 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGE---AGRVLGMTDGGF-------------LPNPV-VASDGSFFAHASTVYSRIARG   73 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECC---CCEEEEEEEccC-------------CCcee-ECCCCCEEEEEeccccccccC
Confidence            78999999996    5999999753   345555555431             22345 9999999999998        


Q ss_pred             -CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           78 -LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        78 -gh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                       ..+.|.+||+.   +++.++++.+++.                  |..+  -|..    |.+|+||||||+|||+|
T Consensus        74 ~~~d~V~v~D~~---t~~~~~~i~~p~~------------------p~~~--~~~~----~~~~~ls~dgk~l~V~n  123 (352)
T TIGR02658        74 KRTDYVEVIDPQ---THLPIADIELPEG------------------PRFL--VGTY----PWMTSLTPDNKTLLFYQ  123 (352)
T ss_pred             CCCCEEEEEECc---cCcEEeEEccCCC------------------chhh--ccCc----cceEEECCCCCEEEEec
Confidence             88999999773   5888888888532                  1100  1444    77999999999999999

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.20  E-value=9.3e-10  Score=102.23  Aligned_cols=151  Identities=18%  Similarity=0.260  Sum_probs=89.0

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|||+++||.+- +++|.++... +  .+..+.+.+.             ..+..|.+|+|||+|||+|+..+++.
T Consensus        41 ~~~~s~Dgr~~yv~~r-dg~vsviD~~-~--~~~v~~i~~G-------------~~~~~i~~s~DG~~~~v~n~~~~~v~  103 (369)
T PF02239_consen   41 GLKFSPDGRYLYVANR-DGTVSVIDLA-T--GKVVATIKVG-------------GNPRGIAVSPDGKYVYVANYEPGTVS  103 (369)
T ss_dssp             EEE-TT-SSEEEEEET-TSEEEEEETT-S--SSEEEEEE-S-------------SEEEEEEE--TTTEEEEEEEETTEEE
T ss_pred             EEEecCCCCEEEEEcC-CCeEEEEECC-c--ccEEEEEecC-------------CCcceEEEcCCCCEEEEEecCCCcee
Confidence            3579999999999985 7899999763 2  2344555432             33578999999999999999999999


Q ss_pred             EEEecCCCCCeEEEEEEecceee------------c-CCc-----------eeeeeCCCCCCCCC-CccccCcccCCCCe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFR------------K-GSP-----------VVAVTDDGQPYQSD-VPEVQGHRLRGGPQ  138 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~------------~-~~~-----------~~~~~~~~~~~~p~-~~~v~G~~~~ggPr  138 (222)
                      ++|.   .+.+++.+|++++.-.            + ..+           |-++. +.....+. ...--|+.    |.
T Consensus       104 v~D~---~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd-y~d~~~~~~~~i~~g~~----~~  175 (369)
T PF02239_consen  104 VIDA---ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD-YSDPKNLKVTTIKVGRF----PH  175 (369)
T ss_dssp             EEET---TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE-TTTSSCEEEEEEE--TT----EE
T ss_pred             Eecc---ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE-eccccccceeeeccccc----cc
Confidence            9975   3578888888865321            1 111           11111 11111111 11113555    99


Q ss_pred             eEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCC
Q 027522          139 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEP  200 (222)
Q Consensus       139 ~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~  200 (222)
                      ++.++||||++++|+        +.       ...|..+  |..++++.    ..+|.++.|
T Consensus       176 D~~~dpdgry~~va~--------~~-------sn~i~vi--D~~~~k~v----~~i~~g~~p  216 (369)
T PF02239_consen  176 DGGFDPDGRYFLVAA--------NG-------SNKIAVI--DTKTGKLV----ALIDTGKKP  216 (369)
T ss_dssp             EEEE-TTSSEEEEEE--------GG-------GTEEEEE--ETTTTEEE----EEEE-SSSB
T ss_pred             ccccCcccceeeecc--------cc-------cceeEEE--eeccceEE----EEeeccccc
Confidence            999999999999987        32       3366666  45777764    246776633

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.16  E-value=5.6e-10  Score=103.67  Aligned_cols=92  Identities=23%  Similarity=0.319  Sum_probs=66.8

Q ss_pred             CCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 027522           11 KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP   90 (222)
Q Consensus        11 g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~   90 (222)
                      ++.+||++.-+++|.++..+   +.+....|.+.-            +..+.+.+|||||+|||+|| .+.|.++|+.  
T Consensus         5 ~~l~~V~~~~~~~v~viD~~---t~~~~~~i~~~~------------~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~--   66 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGA---TNKVVARIPTGG------------APHAGLKFSPDGRYLYVANR-DGTVSVIDLA--   66 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETT---T-SEEEEEE-ST------------TEEEEEE-TT-SSEEEEEET-TSEEEEEETT--
T ss_pred             ccEEEEEecCCCEEEEEECC---CCeEEEEEcCCC------------CceeEEEecCCCCEEEEEcC-CCeEEEEECC--
Confidence            46788888889999999753   344455555431            22467789999999999998 5899999774  


Q ss_pred             CCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           91 KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        91 ~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                       +.+++.+|.+|                            ..    |+.+++|+|||+|||+|
T Consensus        67 -~~~~v~~i~~G----------------------------~~----~~~i~~s~DG~~~~v~n   96 (369)
T PF02239_consen   67 -TGKVVATIKVG----------------------------GN----PRGIAVSPDGKYVYVAN   96 (369)
T ss_dssp             -SSSEEEEEE-S----------------------------SE----EEEEEE--TTTEEEEEE
T ss_pred             -cccEEEEEecC----------------------------CC----cceEEEcCCCCEEEEEe
Confidence             47788999884                            44    99999999999999999

...

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.12  E-value=6.1e-09  Score=87.47  Aligned_cols=134  Identities=13%  Similarity=0.065  Sum_probs=90.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+++++|+.++.+++|.+|... ++  +..+.++........     ....+..|.+||||+++|++....+.|.+
T Consensus       162 ~~~s~dg~~l~~~~~~~~~v~i~d~~-~~--~~~~~~~~~~~~~~~-----~~~~~~~i~~s~dg~~~~~~~~~~~~i~v  233 (300)
T TIGR03866       162 AEFTADGKELWVSSEIGGTVSVIDVA-TR--KVIKKITFEIPGVHP-----EAVQPVGIKLTKDGKTAFVALGPANRVAV  233 (300)
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEEcC-cc--eeeeeeeeccccccc-----ccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence            67999999999999989999998764 33  223333322111110     01234689999999999999988889999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY  164 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y  164 (222)
                      |++.   +.+++..+..                            |..    |..+.++|||++||++|        +  
T Consensus       234 ~d~~---~~~~~~~~~~----------------------------~~~----~~~~~~~~~g~~l~~~~--------~--  268 (300)
T TIGR03866       234 VDAK---TYEVLDYLLV----------------------------GQR----VWQLAFTPDEKYLLTTN--------G--  268 (300)
T ss_pred             EECC---CCcEEEEEEe----------------------------CCC----cceEEECCCCCEEEEEc--------C--
Confidence            9874   2555444433                            223    88999999999999998        3  


Q ss_pred             cccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCC
Q 027522          165 PELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDG  202 (222)
Q Consensus       165 p~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g  202 (222)
                           .+..|..+|.  ++|+.  -..+.  ++++|+|
T Consensus       269 -----~~~~i~v~d~--~~~~~--~~~~~--~~~~~~~  295 (300)
T TIGR03866       269 -----VSNDVSVIDV--AALKV--IKSIK--VGRLPWG  295 (300)
T ss_pred             -----CCCeEEEEEC--CCCcE--EEEEE--cccccce
Confidence                 3556777755  66654  22333  4677777

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.96  E-value=2.2e-08  Score=93.37  Aligned_cols=122  Identities=16%  Similarity=0.157  Sum_probs=84.0

Q ss_pred             EEcC-CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcc--cccccCCCCCCceeEEEEcCCCCEEEEEe------
Q 027522            6 LHDP-SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK--VQNWILPEMPGLITDFLISLDDRFLYFSN------   76 (222)
Q Consensus         6 afhP-~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~--~~g~~~~~~~~~~adI~iSpDgrfLYvSn------   76 (222)
                      .|.| +|+++||-+|  ++|+++....++ -...+.+.+....  -++|.    |...--|.+++||+.|||.+      
T Consensus       200 ~~~~~dg~~~~vs~e--G~V~~id~~~~~-~~~~~~~~~~~~~~~~~~wr----P~g~q~ia~~~dg~~lyV~~~~~~~~  272 (352)
T TIGR02658       200 AYSNKSGRLVWPTYT--GKIFQIDLSSGD-AKFLPAIEAFTEAEKADGWR----PGGWQQVAYHRARDRIYLLADQRAKW  272 (352)
T ss_pred             ceEcCCCcEEEEecC--CeEEEEecCCCc-ceecceeeeccccccccccC----CCcceeEEEcCCCCEEEEEecCCccc
Confidence            3455 9999999999  999999864332 2223444443221  12441    12222399999999999954      


Q ss_pred             ---CCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCC-EEEEE
Q 027522           77 ---WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGK-RLYVT  152 (222)
Q Consensus        77 ---Rgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk-~Lyva  152 (222)
                         .+.+.|+++|.   .+.+.+.++.+                            |+.    |-.+++||||| +||++
T Consensus       273 thk~~~~~V~ViD~---~t~kvi~~i~v----------------------------G~~----~~~iavS~Dgkp~lyvt  317 (352)
T TIGR02658       273 THKTASRFLFVVDA---KTGKRLRKIEL----------------------------GHE----IDSINVSQDAKPLLYAL  317 (352)
T ss_pred             cccCCCCEEEEEEC---CCCeEEEEEeC----------------------------CCc----eeeEEECCCCCeEEEEe
Confidence               22368999875   45888888887                            445    88999999999 99999


Q ss_pred             eCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522          153 NSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       153 Nsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l  186 (222)
                      |        +       .+..+..+|  ..+++.
T Consensus       318 n--------~-------~s~~VsViD--~~t~k~  334 (352)
T TIGR02658       318 S--------T-------GDKTLYIFD--AETGKE  334 (352)
T ss_pred             C--------C-------CCCcEEEEE--CcCCeE
Confidence            9        4       355566674  577765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.86  E-value=1.3e-07  Score=81.07  Aligned_cols=105  Identities=22%  Similarity=0.320  Sum_probs=80.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCC-CeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDG-SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g-~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ++|+|+++.+||..-....|++|..+.++ .+...+++.-++...         +.+-.|.+..+|+ |||++++.+.|.
T Consensus       139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------g~pDG~~vD~~G~-l~va~~~~~~I~  208 (246)
T PF08450_consen  139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---------GYPDGLAVDSDGN-LWVADWGGGRIV  208 (246)
T ss_dssp             EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---------CEEEEEEEBTTS--EEEEEETTTEEE
T ss_pred             eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---------cCCCcceEcCCCC-EEEEEcCCCEEE
Confidence            68999999999999999999999997544 477666553222211         3457899999996 899999999999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEE-CCCCCEEEEEeC
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL-SLDGKRLYVTNS  154 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~l-spdGk~LyvaNs  154 (222)
                      +|+-   . ++++..|.+.                           +.+    |-++++ -+|++.||||.+
T Consensus       209 ~~~p---~-G~~~~~i~~p---------------------------~~~----~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  209 VFDP---D-GKLLREIELP---------------------------VPR----PTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EEET---T-SCEEEEEE-S---------------------------SSS----EEEEEEESTTSSEEEEEEB
T ss_pred             EECC---C-ccEEEEEcCC---------------------------CCC----EEEEEEECCCCCEEEEEeC
Confidence            9953   3 7788888773                           233    889999 689999999974

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.78  E-value=9.9e-07  Score=74.05  Aligned_cols=99  Identities=15%  Similarity=0.204  Sum_probs=69.2

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++.+|+.++.+++|.++.... +  .....+..   .          ..+..|.+||||++|+++......+.
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~--~~~~~~~~---~----------~~~~~~~~~~dg~~l~~~~~~~~~~~  140 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIET-R--KVLAEIPV---G----------VEPEGMAVSPDGKIVVNTSETTNMAH  140 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCC-C--eEEeEeeC---C----------CCcceEEECCCCCEEEEEecCCCeEE
Confidence            4689999999999999889999987642 2  11222211   1          12367999999999999887655666


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .|+..   +.+++..+..                            +..    |+.++++|||++|++++
T Consensus       141 ~~d~~---~~~~~~~~~~----------------------------~~~----~~~~~~s~dg~~l~~~~  175 (300)
T TIGR03866       141 FIDTK---TYEIVDNVLV----------------------------DQR----PRFAEFTADGKELWVSS  175 (300)
T ss_pred             EEeCC---CCeEEEEEEc----------------------------CCC----ccEEEECCCCCEEEEEc
Confidence            67653   3444333322                            223    88999999999999887

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.62  E-value=1.3e-06  Score=74.85  Aligned_cols=132  Identities=20%  Similarity=0.268  Sum_probs=76.7

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc---
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD---   81 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s---   81 (222)
                      ++++.....+|+.++.+  +.++.. ++|+++.  .++.+.... .      ...+-|+.+++||+ ||+++-+...   
T Consensus        45 ~~~~~~~g~l~v~~~~~--~~~~d~-~~g~~~~--~~~~~~~~~-~------~~~~ND~~vd~~G~-ly~t~~~~~~~~~  111 (246)
T PF08450_consen   45 MAFDRPDGRLYVADSGG--IAVVDP-DTGKVTV--LADLPDGGV-P------FNRPNDVAVDPDGN-LYVTDSGGGGASG  111 (246)
T ss_dssp             EEEECTTSEEEEEETTC--EEEEET-TTTEEEE--EEEEETTCS-C------TEEEEEEEE-TTS--EEEEEECCBCTTC
T ss_pred             EEEEccCCEEEEEEcCc--eEEEec-CCCcEEE--EeeccCCCc-c------cCCCceEEEcCCCC-EEEEecCCCcccc
Confidence            45663446667776533  333332 3454432  223221110 1      15578999999999 8888764422   


Q ss_pred             ---EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCc
Q 027522           82 ---IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSA  158 (222)
Q Consensus        82 ---I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~  158 (222)
                         =++|.++. . ++. ..+..+                           -.    .|+-+++||||+.|||++     
T Consensus       112 ~~~g~v~~~~~-~-~~~-~~~~~~---------------------------~~----~pNGi~~s~dg~~lyv~d-----  152 (246)
T PF08450_consen  112 IDPGSVYRIDP-D-GKV-TVVADG---------------------------LG----FPNGIAFSPDGKTLYVAD-----  152 (246)
T ss_dssp             GGSEEEEEEET-T-SEE-EEEEEE---------------------------ES----SEEEEEEETTSSEEEEEE-----
T ss_pred             ccccceEEECC-C-CeE-EEEecC---------------------------cc----cccceEECCcchheeecc-----
Confidence               24666643 3 332 112211                           11    299999999999999999     


Q ss_pred             cccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCC
Q 027522          159 WDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAE  199 (222)
Q Consensus       159 wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~  199 (222)
                                +.+..|++++.|..++.+. +...++++...
T Consensus       153 ----------s~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~  182 (246)
T PF08450_consen  153 ----------SFNGRIWRFDLDADGGELS-NRRVFIDFPGG  182 (246)
T ss_dssp             ----------TTTTEEEEEEEETTTCCEE-EEEEEEE-SSS
T ss_pred             ----------cccceeEEEecccccccee-eeeeEEEcCCC
Confidence                      5678899999987777664 33444777654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=1.7e-06  Score=80.40  Aligned_cols=109  Identities=18%  Similarity=0.167  Sum_probs=72.9

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -.++.|+|+.+||.++-+++|.++.-...   ...+  ..+...+.      ....++.|.++|||.++||.|..+.+-.
T Consensus       164 ~~a~~p~g~~vyv~~~~~~~v~vi~~~~~---~v~~--~~~~~~~~------~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         164 GVAVDPDGNKVYVTNSDDNTVSVIDTSGN---SVVR--GSVGSLVG------VGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             eEEECCCCCeEEEEecCCCeEEEEeCCCc---ceec--cccccccc------cCCCCceEEECCCCCEEEEEeccCCCce
Confidence            46899999999999999999999974321   1111  11110111      1145699999999999999999885445


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                      ++.++ .....+.......+                         ++ .    |+...++|+|++.||+|+
T Consensus       233 v~~id-~~~~~v~~~~~~~~-------------------------~~-~----~~~v~~~p~g~~~yv~~~  272 (381)
T COG3391         233 VLKID-TATGNVTATDLPVG-------------------------SG-A----PRGVAVDPAGKAAYVANS  272 (381)
T ss_pred             EEEEe-CCCceEEEeccccc-------------------------cC-C----CCceeECCCCCEEEEEec
Confidence            55552 23344433311111                         12 4    999999999999999994

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=1.8e-06  Score=80.19  Aligned_cols=122  Identities=20%  Similarity=0.245  Sum_probs=83.9

Q ss_pred             eEEEcCCCCeEEEEec--cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522            4 RFLHDPSKDIGFVGCA--LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD   81 (222)
Q Consensus         4 r~afhP~g~~aYvv~E--LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s   81 (222)
                      -++++|+++.+||.+.  .+++|.++.... +  +..+.+..      |       ..+..+.++|||.++||+|-..+.
T Consensus       120 ~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~--~~~~~~~v------G-------~~P~~~a~~p~g~~vyv~~~~~~~  183 (381)
T COG3391         120 GLAVDPDGKYVYVANAGNGNNTVSVIDAAT-N--KVTATIPV------G-------NTPTGVAVDPDGNKVYVTNSDDNT  183 (381)
T ss_pred             eEEECCCCCEEEEEecccCCceEEEEeCCC-C--eEEEEEec------C-------CCcceEEECCCCCeEEEEecCCCe
Confidence            4789999999999999  689999997642 2  22222222      2       123889999999999999999999


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC  161 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~  161 (222)
                      |.+++.+.   ..+..  ...+.                     ....|..    |+.+.++|||+++||+|        
T Consensus       184 v~vi~~~~---~~v~~--~~~~~---------------------~~~~~~~----P~~i~v~~~g~~~yV~~--------  225 (381)
T COG3391         184 VSVIDTSG---NSVVR--GSVGS---------------------LVGVGTG----PAGIAVDPDGNRVYVAN--------  225 (381)
T ss_pred             EEEEeCCC---cceec--ccccc---------------------ccccCCC----CceEEECCCCCEEEEEe--------
Confidence            99998532   33321  11000                     0012444    99999999999999999        


Q ss_pred             ccccccccCCcEEEEEEeeCCCCCe
Q 027522          162 QFYPELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       162 Q~yp~~~s~~~~i~~~dvd~~~G~l  186 (222)
                      +.     +....+.++  |..++.+
T Consensus       226 ~~-----~~~~~v~~i--d~~~~~v  243 (381)
T COG3391         226 DG-----SGSNNVLKI--DTATGNV  243 (381)
T ss_pred             cc-----CCCceEEEE--eCCCceE
Confidence            54     223577777  4466655

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=98.52  E-value=3.5e-07  Score=58.40  Aligned_cols=32  Identities=19%  Similarity=0.133  Sum_probs=27.9

Q ss_pred             CCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 027522           67 LDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV  101 (222)
Q Consensus        67 pDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~  101 (222)
                      ||+++||||||++++|++++.   .+++++.++.+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~---~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDT---ATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEEC---CCCeEEEEEEC
Confidence            799999999999999999976   35778888887

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.47  E-value=1.9e-06  Score=85.73  Aligned_cols=122  Identities=13%  Similarity=0.206  Sum_probs=78.6

Q ss_pred             EEEcCCCCeEEEEe---ccCceEEEEEeC-----------------CCCCeeEE-----EEEEecC-----cccccccCC
Q 027522            5 FLHDPSKDIGFVGC---ALASTMVRFSKT-----------------QDGSWNHE-----VAISVKS-----LKVQNWILP   54 (222)
Q Consensus         5 ~afhP~g~~aYvv~---ELsstV~~~~~d-----------------~~g~~~~~-----q~is~~p-----~~~~g~~~~   54 (222)
                      ..++|+|+++|+.|   |.+.++..+...                 ++|+....     .++....     ..+..  .-
T Consensus       240 v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~--yI  317 (635)
T PRK02888        240 VDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTR--YV  317 (635)
T ss_pred             ceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEE--EE
Confidence            47899999999998   887776665221                 12332221     2222211     01111  12


Q ss_pred             CCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCC---------CeEEEEEEecceeecCCceeeeeCCCCCCCCCC
Q 027522           55 EMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKN---------PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDV  125 (222)
Q Consensus        55 ~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~---------~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~  125 (222)
                      ++|..+-.|.+|||||++||+|...+++.|++++.-..         -.+++++.+                        
T Consensus       318 PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev------------------------  373 (635)
T PRK02888        318 PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL------------------------  373 (635)
T ss_pred             ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc------------------------
Confidence            25677899999999999999999999999999964111         123444444                        


Q ss_pred             ccccCcccCCCCeeEEECCCCCEEEEEe---CCCCcccc
Q 027522          126 PEVQGHRLRGGPQMIQLSLDGKRLYVTN---SLFSAWDC  161 (222)
Q Consensus       126 ~~v~G~~~~ggPr~~~lspdGk~LyvaN---sl~~~wd~  161 (222)
                          |..    |.+-+++++|+ .|++-   |-..+|+=
T Consensus       374 ----GlG----PLHTaFDg~G~-aytslf~dsqv~kwn~  403 (635)
T PRK02888        374 ----GLG----PLHTAFDGRGN-AYTTLFLDSQIVKWNI  403 (635)
T ss_pred             ----CCC----cceEEECCCCC-EEEeEeecceeEEEeh
Confidence                565    99999999996 77763   23345663

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.36  E-value=1.3e-05  Score=83.85  Aligned_cols=146  Identities=16%  Similarity=0.214  Sum_probs=86.3

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEec--Ccccccc-cCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVK--SLKVQNW-ILPEMPGLITDFLISLDDRFLYFSNWLHGD   81 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~--p~~~~g~-~~~~~~~~~adI~iSpDgrfLYvSnRgh~s   81 (222)
                      ++|+|++..+||.+..++.|+++... +|...   ++.-.  .....+. .....-+.+..|.+||||++|||++.+.+.
T Consensus       688 Va~dp~~g~LyVad~~~~~I~v~d~~-~g~v~---~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        688 VCFEPVNEKVYIAMAGQHQIWEYNIS-DGVTR---VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             EEEecCCCeEEEEECCCCeEEEEECC-CCeEE---EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            68899899999999999999998763 33321   11100  0000010 000011457899999999999999999999


Q ss_pred             EEEEEecCCCCCeEEEEEEecce--eecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcc
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGL--FRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAW  159 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~--~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~w  159 (222)
                      |++|+++. +..++    ..||.  ++.  ...-.++.+   -+ ...+...    .|+-++++++|+ ||||+      
T Consensus       764 Irv~D~~t-g~~~~----~~gg~~~~~~--~l~~fG~~d---G~-g~~~~l~----~P~Gvavd~dG~-LYVAD------  821 (1057)
T PLN02919        764 IRALDLKT-GGSRL----LAGGDPTFSD--NLFKFGDHD---GV-GSEVLLQ----HPLGVLCAKDGQ-IYVAD------  821 (1057)
T ss_pred             EEEEECCC-CcEEE----EEecccccCc--ccccccCCC---Cc-hhhhhcc----CCceeeEeCCCc-EEEEE------
Confidence            99998853 22222    22221  000  000000000   00 0001122    399999999997 99999      


Q ss_pred             ccccccccccCCcEEEEEEeeCCCCCee
Q 027522          160 DCQFYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       160 d~Q~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                               +.+..|.++|.  ++|.+.
T Consensus       822 ---------s~N~rIrviD~--~tg~v~  838 (1057)
T PLN02919        822 ---------SYNHKIKKLDP--ATKRVT  838 (1057)
T ss_pred             ---------CCCCEEEEEEC--CCCeEE
Confidence                     46888888854  667663

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.29  E-value=9.6e-06  Score=80.81  Aligned_cols=123  Identities=14%  Similarity=0.076  Sum_probs=72.5

Q ss_pred             EeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC---C-
Q 027522            3 IRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW---L-   78 (222)
Q Consensus         3 vr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR---g-   78 (222)
                      -|.=+.|+|+.+++-+|-.+.|+++.-+   +++....+.+..             .+--+.+|+||+++|++|-   . 
T Consensus       196 ~~~PlpnDGk~l~~~~ey~~~vSvID~e---tmeV~~qV~Vdg-------------npd~v~~spdGk~afvTsyNsE~G  259 (635)
T PRK02888        196 FRIPLPNDGKDLDDPKKYRSLFTAVDAE---TMEVAWQVMVDG-------------NLDNVDTDYDGKYAFSTCYNSEEG  259 (635)
T ss_pred             cccccCCCCCEeecccceeEEEEEEECc---cceEEEEEEeCC-------------CcccceECCCCCEEEEeccCcccC
Confidence            3555788999999999999999988542   455555555432             2356789999999999972   1 


Q ss_pred             ----------CCcEEEEEecC----CCCCeEEEEEEecceeecCCceeeeeCCC--C-CCCCCCccccCcccCCCCeeEE
Q 027522           79 ----------HGDIRQYNIED----PKNPVLTGQIWVGGLFRKGSPVVAVTDDG--Q-PYQSDVPEVQGHRLRGGPQMIQ  141 (222)
Q Consensus        79 ----------h~sI~vf~i~d----~~~~~L~~~v~~gG~~~~~~~~~~~~~~~--~-~~~p~~~~v~G~~~~ggPr~~~  141 (222)
                                .+.+.+|++..    -..++.   ..++     +..|.|+.-..  . .......-.-|+.    |--++
T Consensus       260 ~tl~em~a~e~d~~vvfni~~iea~vkdGK~---~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVGKs----PHGV~  327 (635)
T PRK02888        260 VTLAEMMAAERDWVVVFNIARIEEAVKAGKF---KTIG-----GSKVPVVDGRKAANAGSALTRYVPVPKN----PHGVN  327 (635)
T ss_pred             cceeeeccccCceEEEEchHHHHHhhhCCCE---EEEC-----CCEEEEEECCccccCCcceEEEEECCCC----ccceE
Confidence                      22344444421    001111   1111     12344442111  0 0111112223777    99999


Q ss_pred             ECCCCCEEEEEe
Q 027522          142 LSLDGKRLYVTN  153 (222)
Q Consensus       142 lspdGk~LyvaN  153 (222)
                      +|||||++||+|
T Consensus       328 vSPDGkylyVan  339 (635)
T PRK02888        328 TSPDGKYFIANG  339 (635)
T ss_pred             ECCCCCEEEEeC
Confidence            999999999999

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.21  E-value=6.9e-05  Score=63.61  Aligned_cols=98  Identities=14%  Similarity=0.171  Sum_probs=67.0

Q ss_pred             EeEEEcCCCCeEEEEe-ccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC--C
Q 027522            3 IRFLHDPSKDIGFVGC-ALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL--H   79 (222)
Q Consensus         3 vr~afhP~g~~aYvv~-ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg--h   79 (222)
                      ..++++|+|+...|+. +...+|..|...      .+++.++..            ...-.|..||+|++|-++..+  .
T Consensus        63 ~~~~WsP~g~~favi~g~~~~~v~lyd~~------~~~i~~~~~------------~~~n~i~wsP~G~~l~~~g~~n~~  124 (194)
T PF08662_consen   63 HDVAWSPNGNEFAVIYGSMPAKVTLYDVK------GKKIFSFGT------------QPRNTISWSPDGRFLVLAGFGNLN  124 (194)
T ss_pred             EEEEECcCCCEEEEEEccCCcccEEEcCc------ccEeEeecC------------CCceEEEECCCCCEEEEEEccCCC
Confidence            4689999998877774 566677777542      122223321            112469999999999999876  4


Q ss_pred             CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           80 GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        80 ~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                      |.|.+|++.   +.+.+.+....                                 ....++.||||++|..|.+
T Consensus       125 G~l~~wd~~---~~~~i~~~~~~---------------------------------~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  125 GDLEFWDVR---KKKKISTFEHS---------------------------------DATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cEEEEEECC---CCEEeeccccC---------------------------------cEEEEEEcCCCCEEEEEEe
Confidence            789999985   34453332221                                 1568999999999999873

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.20  E-value=4.6e-05  Score=79.83  Aligned_cols=149  Identities=15%  Similarity=0.134  Sum_probs=87.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEE-EecCc---cc---ccccCCCCCCceeEEEEcCCCCEEEEEeC
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAI-SVKSL---KV---QNWILPEMPGLITDFLISLDDRFLYFSNW   77 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~i-s~~p~---~~---~g~~~~~~~~~~adI~iSpDgrfLYvSnR   77 (222)
                      ++++|+++++||.+.-+++|.+|..+. |......-. .+.+.   .+   .|......-..+..|.+++||+ |||+++
T Consensus       745 IavspdG~~LYVADs~n~~Irv~D~~t-g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs  822 (1057)
T PLN02919        745 ISLSPDLKELYIADSESSSIRALDLKT-GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADS  822 (1057)
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEECCC-CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEEC
Confidence            789999999999999999999998753 332111000 00000   00   0100000113467999999998 999999


Q ss_pred             CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCC
Q 027522           78 LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFS  157 (222)
Q Consensus        78 gh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~  157 (222)
                      +.+.|++|+.+.   +++.....+|..-..++             +. ...+-.    .|+-++++++|+ ||||+    
T Consensus       823 ~N~rIrviD~~t---g~v~tiaG~G~~G~~dG-------------~~-~~a~l~----~P~GIavd~dG~-lyVaD----  876 (1057)
T PLN02919        823 YNHKIKKLDPAT---KRVTTLAGTGKAGFKDG-------------KA-LKAQLS----EPAGLALGENGR-LFVAD----  876 (1057)
T ss_pred             CCCEEEEEECCC---CeEEEEeccCCcCCCCC-------------cc-cccccC----CceEEEEeCCCC-EEEEE----
Confidence            999999998732   44422222211000000             00 001112    399999999996 99999    


Q ss_pred             ccccccccccccCCcEEEEEEeeCCCCCeeeccceeEec
Q 027522          158 AWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDF  196 (222)
Q Consensus       158 ~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf  196 (222)
                                 +.+..|.++|.  .++.+.  +-+.+++
T Consensus       877 -----------t~Nn~Irvid~--~~~~~~--~~~~l~~  900 (1057)
T PLN02919        877 -----------TNNSLIRYLDL--NKGEAA--EILTLEL  900 (1057)
T ss_pred             -----------CCCCEEEEEEC--CCCccc--eeEeecc
Confidence                       46778888866  555431  2234555

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.15  E-value=4.2e-05  Score=70.55  Aligned_cols=103  Identities=21%  Similarity=0.254  Sum_probs=68.4

Q ss_pred             EEEcCCCCeEEEEeccCce-EEEEEeCCCCCeeEEEEEEecC-cccccccCCCCCCceeEEEEcCCCCEEEEEeC----C
Q 027522            5 FLHDPSKDIGFVGCALAST-MVRFSKTQDGSWNHEVAISVKS-LKVQNWILPEMPGLITDFLISLDDRFLYFSNW----L   78 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsst-V~~~~~d~~g~~~~~q~is~~p-~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR----g   78 (222)
                      ++.||+...+-++.==-.+ ..+|.. .+|+  ..+.+..++ ..|           --.=..|+|||+||++--    +
T Consensus        10 ~a~~p~~~~avafaRRPG~~~~v~D~-~~g~--~~~~~~a~~gRHF-----------yGHg~fs~dG~~LytTEnd~~~g   75 (305)
T PF07433_consen   10 VAAHPTRPEAVAFARRPGTFALVFDC-RTGQ--LLQRLWAPPGRHF-----------YGHGVFSPDGRLLYTTENDYETG   75 (305)
T ss_pred             eeeCCCCCeEEEEEeCCCcEEEEEEc-CCCc--eeeEEcCCCCCEE-----------ecCEEEcCCCCEEEEeccccCCC
Confidence            3566755555544444444 333433 2343  234444332 222           245679999999999944    6


Q ss_pred             CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           79 HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        79 h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                      .|-|.||+..  ...+.+++.+++|+                               ||=.+.+.|||+.|.|||-
T Consensus        76 ~G~IgVyd~~--~~~~ri~E~~s~GI-------------------------------GPHel~l~pDG~tLvVANG  118 (305)
T PF07433_consen   76 RGVIGVYDAA--RGYRRIGEFPSHGI-------------------------------GPHELLLMPDGETLVVANG  118 (305)
T ss_pred             cEEEEEEECc--CCcEEEeEecCCCc-------------------------------ChhhEEEcCCCCEEEEEcC
Confidence            7899999985  35677788888765                               3889999999999999993

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.11  E-value=6.4e-05  Score=70.30  Aligned_cols=100  Identities=21%  Similarity=0.238  Sum_probs=62.8

Q ss_pred             CCCeEEEEec----cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEe-------CC
Q 027522           10 SKDIGFVGCA----LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN-------WL   78 (222)
Q Consensus        10 ~g~~aYvv~E----LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSn-------Rg   78 (222)
                      |.+++||+.-    +.+.|+++.-+ +++  .+-.+++              +..+.+.+|||||++|+++       ||
T Consensus         1 ~~~rvyV~D~~~~~~~~rv~viD~d-~~k--~lGmi~~--------------g~~~~~~~spdgk~~y~a~T~~sR~~rG   63 (342)
T PF06433_consen    1 DAHRVYVQDPVFFHMTSRVYVIDAD-SGK--LLGMIDT--------------GFLGNVALSPDGKTIYVAETFYSRGTRG   63 (342)
T ss_dssp             -TTEEEEEE-GGGGSSEEEEEEETT-TTE--EEEEEEE--------------ESSEEEEE-TTSSEEEEEEEEEEETTEE
T ss_pred             CCcEEEEECCccccccceEEEEECC-CCc--EEEEeec--------------ccCCceeECCCCCEEEEEEEEEeccccc
Confidence            4578888876    55677777643 343  3444443              2346788999999999864       23


Q ss_pred             --CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           79 --HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        79 --h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                        .|-|.+||.   .+++..+.|.+-+.                    .+-.-+-.    +++++||.|||||||.|
T Consensus        64 ~RtDvv~~~D~---~TL~~~~EI~iP~k--------------------~R~~~~~~----~~~~~ls~dgk~~~V~N  113 (342)
T PF06433_consen   64 ERTDVVEIWDT---QTLSPTGEIEIPPK--------------------PRAQVVPY----KNMFALSADGKFLYVQN  113 (342)
T ss_dssp             EEEEEEEEEET---TTTEEEEEEEETTS---------------------B--BS------GGGEEE-TTSSEEEEEE
T ss_pred             cceeEEEEEec---CcCcccceEecCCc--------------------chheeccc----ccceEEccCCcEEEEEc
Confidence              466888865   45878777776210                    01011233    89999999999999999

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.87  E-value=0.0005  Score=65.16  Aligned_cols=120  Identities=13%  Similarity=0.135  Sum_probs=65.5

Q ss_pred             eEEEcCCCCeEEEEeccCce--EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522            4 RFLHDPSKDIGFVGCALAST--MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD   81 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsst--V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s   81 (222)
                      .++|+|+|+++++...-+..  |+++..+ .++.+   .++..    .        ........||||++|+++....+.
T Consensus       266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~---~lt~~----~--------~~~~~p~wSpDG~~I~f~s~~~g~  329 (448)
T PRK04792        266 APRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALT---RITRH----R--------AIDTEPSWHPDGKSLIFTSERGGK  329 (448)
T ss_pred             CeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeE---ECccC----C--------CCccceEECCCCCEEEEEECCCCC
Confidence            36799999977665443443  5555442 34331   11111    0        122567899999998765544445


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC  161 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~  161 (222)
                      ..+|.++- ..++. .++...                           |..    ....++||||++|+.++        
T Consensus       330 ~~Iy~~dl-~~g~~-~~Lt~~---------------------------g~~----~~~~~~SpDG~~l~~~~--------  368 (448)
T PRK04792        330 PQIYRVNL-ASGKV-SRLTFE---------------------------GEQ----NLGGSITPDGRSMIMVN--------  368 (448)
T ss_pred             ceEEEEEC-CCCCE-EEEecC---------------------------CCC----CcCeeECCCCCEEEEEE--------
Confidence            55555532 22322 122221                           122    22347899999999987        


Q ss_pred             ccccccccCCcEEEEEEeeCCCCCee
Q 027522          162 QFYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       162 Q~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                      +.     .....++.+|.  .+|.++
T Consensus       369 ~~-----~g~~~I~~~dl--~~g~~~  387 (448)
T PRK04792        369 RT-----NGKFNIARQDL--ETGAMQ  387 (448)
T ss_pred             ec-----CCceEEEEEEC--CCCCeE
Confidence            32     23346666644  667664

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.79  E-value=0.001  Score=62.63  Aligned_cols=121  Identities=17%  Similarity=0.163  Sum_probs=68.1

Q ss_pred             EEEcCCCCeEEEEeccCc--eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEE-EEEeCCCCc
Q 027522            5 FLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFL-YFSNWLHGD   81 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELss--tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfL-YvSnRgh~s   81 (222)
                      ++|+|||++++++...+.  .|+++..+ .|+..  + +  ....          ........||||++| |+|+|. +.
T Consensus       248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~-tg~~~--~-l--t~~~----------~~~~~~~wSPDG~~I~f~s~~~-g~  310 (429)
T PRK03629        248 PAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIR--Q-V--TDGR----------SNNTEPTWFPDSQNLAYTSDQA-GR  310 (429)
T ss_pred             eEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEE--E-c--cCCC----------CCcCceEECCCCCEEEEEeCCC-CC
Confidence            579999998877654443  46666543 34332  1 1  1111          223678899999977 677764 34


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC  161 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~  161 (222)
                      ..+|.++- ..+.. .++...                           |..    .....+||||++|+.++        
T Consensus       311 ~~Iy~~d~-~~g~~-~~lt~~---------------------------~~~----~~~~~~SpDG~~Ia~~~--------  349 (429)
T PRK03629        311 PQVYKVNI-NGGAP-QRITWE---------------------------GSQ----NQDADVSSDGKFMVMVS--------  349 (429)
T ss_pred             ceEEEEEC-CCCCe-EEeecC---------------------------CCC----ccCEEECCCCCEEEEEE--------
Confidence            56665532 22222 222221                           122    45678999999998876        


Q ss_pred             ccccccccCCcEEEEEEeeCCCCCee-ecc
Q 027522          162 QFYPELKEKGSHMLQIDVNSEKGGMA-INP  190 (222)
Q Consensus       162 Q~yp~~~s~~~~i~~~dvd~~~G~l~-~~~  190 (222)
                      +.     .....++.+|.  ++|.++ +..
T Consensus       350 ~~-----~g~~~I~~~dl--~~g~~~~Lt~  372 (429)
T PRK03629        350 SN-----GGQQHIAKQDL--ATGGVQVLTD  372 (429)
T ss_pred             cc-----CCCceEEEEEC--CCCCeEEeCC
Confidence            21     22345666644  667664 443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.71  E-value=0.0014  Score=61.38  Aligned_cols=70  Identities=11%  Similarity=0.143  Sum_probs=40.0

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC--
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG--   80 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~--   80 (222)
                      -..|+|||++++..+.-++...+|..+. .+..   +.++..     +       .......+||||++|+.+++..+  
T Consensus       288 ~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt~~-----g-------~~~~~~~~SpDG~~Ia~~s~~~g~~  352 (427)
T PRK02889        288 EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA---QRVTFT-----G-------SYNTSPRISPDGKLLAYISRVGGAF  352 (427)
T ss_pred             CeEEcCCCCEEEEEecCCCCcEEEEEECCCCce---EEEecC-----C-------CCcCceEECCCCCEEEEEEccCCcE
Confidence            4679999998776665444444444332 2322   222221     1       11234679999999976654333  


Q ss_pred             cEEEEEec
Q 027522           81 DIRQYNIE   88 (222)
Q Consensus        81 sI~vf~i~   88 (222)
                      .|.+|+++
T Consensus       353 ~I~v~d~~  360 (427)
T PRK02889        353 KLYVQDLA  360 (427)
T ss_pred             EEEEEECC
Confidence            57777763

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.60  E-value=0.0033  Score=59.45  Aligned_cols=36  Identities=17%  Similarity=0.164  Sum_probs=23.1

Q ss_pred             CeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCee
Q 027522          137 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       137 Pr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                      ....++||||++|+.+.        +.     .....|+.+|+  ++|+++
T Consensus       329 ~~~p~wSPDG~~Laf~~--------~~-----~g~~~I~v~dl--~~g~~~  364 (428)
T PRK01029        329 SSCPAWSPDGKKIAFCS--------VI-----KGVRQICVYDL--ATGRDY  364 (428)
T ss_pred             ccceeECCCCCEEEEEE--------cC-----CCCcEEEEEEC--CCCCeE
Confidence            34568999999998776        21     12345666644  667663

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.54  E-value=0.0034  Score=58.90  Aligned_cols=67  Identities=16%  Similarity=0.168  Sum_probs=36.4

Q ss_pred             EEEcCCCCeEEEEeccCce--EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEE-EEeCCCCc
Q 027522            5 FLHDPSKDIGFVGCALAST--MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLY-FSNWLHGD   81 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsst--V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLY-vSnRgh~s   81 (222)
                      .+|+|||+.+++...-+..  |+.+..+ .+..   +.+  ...  .        ........|||||+|+ +|+|+ +.
T Consensus       245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~---~~l--t~~--~--------~~~~~~~wSpDG~~l~f~s~~~-g~  307 (427)
T PRK02889        245 PAWSPDGRTLAVALSRDGNSQIYTVNAD-GSGL---RRL--TQS--S--------GIDTEPFFSPDGRSIYFTSDRG-GA  307 (427)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECC-CCCc---EEC--CCC--C--------CCCcCeEEcCCCCEEEEEecCC-CC
Confidence            5799999877665444444  4444332 2222   111  110  1        1124567999999876 67764 34


Q ss_pred             EEEEEec
Q 027522           82 IRQYNIE   88 (222)
Q Consensus        82 I~vf~i~   88 (222)
                      ..+|.++
T Consensus       308 ~~Iy~~~  314 (427)
T PRK02889        308 PQIYRMP  314 (427)
T ss_pred             cEEEEEE
Confidence            5566653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.53  E-value=0.0021  Score=59.58  Aligned_cols=67  Identities=7%  Similarity=0.101  Sum_probs=40.5

Q ss_pred             EEEcCCCCeEEEEeccCc--eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC--
Q 027522            5 FLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG--   80 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELss--tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~--   80 (222)
                      ..|+|+|+.+|...+-+.  .|+++.. ..|+..   .++..     +       ...+...+||||++||.+++..+  
T Consensus       292 ~~~spDg~~i~f~s~~~g~~~iy~~d~-~~g~~~---~lt~~-----~-------~~~~~~~~Spdg~~i~~~~~~~~~~  355 (430)
T PRK00178        292 PFWGKDGRTLYFTSDRGGKPQIYKVNV-NGGRAE---RVTFV-----G-------NYNARPRLSADGKTLVMVHRQDGNF  355 (430)
T ss_pred             eEECCCCCEEEEEECCCCCceEEEEEC-CCCCEE---EeecC-----C-------CCccceEECCCCCEEEEEEccCCce
Confidence            578999998777665443  3555443 234432   22211     1       11245679999999998887554  


Q ss_pred             cEEEEEe
Q 027522           81 DIRQYNI   87 (222)
Q Consensus        81 sI~vf~i   87 (222)
                      .|.++++
T Consensus       356 ~l~~~dl  362 (430)
T PRK00178        356 HVAAQDL  362 (430)
T ss_pred             EEEEEEC
Confidence            4666665

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.52  E-value=0.0032  Score=58.95  Aligned_cols=100  Identities=13%  Similarity=0.118  Sum_probs=54.5

Q ss_pred             eEEEcCCCCeEEEEeccC--ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEE-EEeCCCC
Q 027522            4 RFLHDPSKDIGFVGCALA--STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLY-FSNWLHG   80 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELs--stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLY-vSnRgh~   80 (222)
                      -..|+|+|+.+++...-+  ..|+++..+ .|..  .+ ++  ..  .        ........||||++|+ +|+|. +
T Consensus       252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-~g~~--~~-lt--~~--~--------~~~~~~~~spDG~~l~f~sd~~-g  314 (433)
T PRK04922        252 APSFSPDGRRLALTLSRDGNPEIYVMDLG-SRQL--TR-LT--NH--F--------GIDTEPTWAPDGKSIYFTSDRG-G  314 (433)
T ss_pred             CceECCCCCEEEEEEeCCCCceEEEEECC-CCCe--EE-Cc--cC--C--------CCccceEECCCCCEEEEEECCC-C
Confidence            357999998776543222  347776553 3432  11 11  11  0        1125678999999876 45553 3


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ...+|.++- ..++. .++...                           |..    ....++||||++|++++
T Consensus       315 ~~~iy~~dl-~~g~~-~~lt~~---------------------------g~~----~~~~~~SpDG~~Ia~~~  354 (433)
T PRK04922        315 RPQIYRVAA-SGGSA-ERLTFQ---------------------------GNY----NARASVSPDGKKIAMVH  354 (433)
T ss_pred             CceEEEEEC-CCCCe-EEeecC---------------------------CCC----ccCEEECCCCCEEEEEE
Confidence            444454422 11222 122221                           222    44578999999999886

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.52  E-value=0.0029  Score=59.28  Aligned_cols=68  Identities=15%  Similarity=0.041  Sum_probs=39.9

Q ss_pred             EEEcCCCCeEEEE-ecc-CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            5 FLHDPSKDIGFVG-CAL-ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv-~EL-sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      ..|+|+|++++.+ .+- ..+|+++... .|+.+   .+...    .+        ....+..||||+.|+++....+.+
T Consensus       209 p~wSPDG~~la~~s~~~~~~~i~i~dl~-tg~~~---~l~~~----~g--------~~~~~~wSPDG~~La~~~~~~g~~  272 (429)
T PRK01742        209 PAWSPDGSKLAYVSFENKKSQLVVHDLR-SGARK---VVASF----RG--------HNGAPAFSPDGSRLAFASSKDGVL  272 (429)
T ss_pred             ceEcCCCCEEEEEEecCCCcEEEEEeCC-CCceE---EEecC----CC--------ccCceeECCCCCEEEEEEecCCcE
Confidence            6789999765444 332 2457666542 33321   12211    11        124689999999998876556666


Q ss_pred             EEEEec
Q 027522           83 RQYNIE   88 (222)
Q Consensus        83 ~vf~i~   88 (222)
                      .+|.++
T Consensus       273 ~Iy~~d  278 (429)
T PRK01742        273 NIYVMG  278 (429)
T ss_pred             EEEEEE
Confidence            666663

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.50  E-value=0.0034  Score=57.08  Aligned_cols=118  Identities=14%  Similarity=0.104  Sum_probs=63.5

Q ss_pred             EEEcCCCCeEEEEeccCce--EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEE-EEeCCCCc
Q 027522            5 FLHDPSKDIGFVGCALAST--MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLY-FSNWLHGD   81 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsst--V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLY-vSnRgh~s   81 (222)
                      ++|+|+|+.+|+....+..  |+.+..+ ++..   +.+...    .+        .......||||++|+ +|+|+ +.
T Consensus       239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~~---~~l~~~----~~--------~~~~~~~s~dg~~l~~~s~~~-g~  301 (417)
T TIGR02800       239 PAFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQL---TRLTNG----PG--------IDTEPSWSPDGKSIAFTSDRG-GS  301 (417)
T ss_pred             eEECCCCCEEEEEECCCCCccEEEEECC-CCCE---EECCCC----CC--------CCCCEEECCCCCEEEEEECCC-CC
Confidence            5789999987766554443  5555442 3322   111111    11        113457899999875 56653 33


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC  161 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~  161 (222)
                      ..+|.++- ..++. .++...                           +..    .....+||||++|++++        
T Consensus       302 ~~iy~~d~-~~~~~-~~l~~~---------------------------~~~----~~~~~~spdg~~i~~~~--------  340 (417)
T TIGR02800       302 PQIYMMDA-DGGEV-RRLTFR---------------------------GGY----NASPSWSPDGDLIAFVH--------  340 (417)
T ss_pred             ceEEEEEC-CCCCE-EEeecC---------------------------CCC----ccCeEECCCCCEEEEEE--------
Confidence            34444421 12222 122221                           122    44678999999999998        


Q ss_pred             ccccccccCCcEEEEEEeeCCCCCee
Q 027522          162 QFYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       162 Q~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                      +.     .....|+.+|+  .+|.++
T Consensus       341 ~~-----~~~~~i~~~d~--~~~~~~  359 (417)
T TIGR02800       341 RE-----GGGFNIAVMDL--DGGGER  359 (417)
T ss_pred             cc-----CCceEEEEEeC--CCCCeE
Confidence            32     23456777765  445554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.46  E-value=0.0038  Score=59.23  Aligned_cols=67  Identities=12%  Similarity=-0.021  Sum_probs=36.6

Q ss_pred             EEEcCCCCeE-EEEeccC-ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc-
Q 027522            5 FLHDPSKDIG-FVGCALA-STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD-   81 (222)
Q Consensus         5 ~afhP~g~~a-Yvv~ELs-stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s-   81 (222)
                      ..|+|||+++ |+..+-+ +.|+++..+ .|+.   +.++..    .+        .......||||++|+++....+. 
T Consensus       223 p~wSPDG~~La~~s~~~g~~~L~~~dl~-tg~~---~~lt~~----~g--------~~~~~~wSPDG~~La~~~~~~g~~  286 (448)
T PRK04792        223 PAWSPDGRKLAYVSFENRKAEIFVQDIY-TQVR---EKVTSF----PG--------INGAPRFSPDGKKLALVLSKDGQP  286 (448)
T ss_pred             ceECCCCCEEEEEEecCCCcEEEEEECC-CCCe---EEecCC----CC--------CcCCeeECCCCCEEEEEEeCCCCe
Confidence            5789999755 5544432 346666543 3332   122211    11        12357899999988765443444 


Q ss_pred             -EEEEEe
Q 027522           82 -IRQYNI   87 (222)
Q Consensus        82 -I~vf~i   87 (222)
                       |.++++
T Consensus       287 ~Iy~~dl  293 (448)
T PRK04792        287 EIYVVDI  293 (448)
T ss_pred             EEEEEEC
Confidence             555544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.44  E-value=0.0065  Score=56.90  Aligned_cols=69  Identities=12%  Similarity=0.112  Sum_probs=42.1

Q ss_pred             eEEEcCCCCeEEEEeccCce--EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC-
Q 027522            4 RFLHDPSKDIGFVGCALAST--MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG-   80 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsst--V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~-   80 (222)
                      -+.|+|+|++++....-+..  |+++.. ..|+.   +.++..     +       .....+.+||||++||++++..+ 
T Consensus       296 ~~~~spDG~~l~f~sd~~g~~~iy~~dl-~~g~~---~~lt~~-----g-------~~~~~~~~SpDG~~Ia~~~~~~~~  359 (433)
T PRK04922        296 EPTWAPDGKSIYFTSDRGGRPQIYRVAA-SGGSA---ERLTFQ-----G-------NYNARASVSPDGKKIAMVHGSGGQ  359 (433)
T ss_pred             ceEECCCCCEEEEEECCCCCceEEEEEC-CCCCe---EEeecC-----C-------CCccCEEECCCCCEEEEEECCCCc
Confidence            46799999987776654444  555433 23432   222221     1       12246789999999998876433 


Q ss_pred             -cEEEEEec
Q 027522           81 -DIRQYNIE   88 (222)
Q Consensus        81 -sI~vf~i~   88 (222)
                       .|.+|++.
T Consensus       360 ~~I~v~d~~  368 (433)
T PRK04922        360 YRIAVMDLS  368 (433)
T ss_pred             eeEEEEECC
Confidence             57777763

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.41  E-value=0.0076  Score=55.83  Aligned_cols=67  Identities=13%  Similarity=0.052  Sum_probs=35.8

Q ss_pred             EEEcCCCCeEEEEe-ccC-ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEE-EEeCC-CC
Q 027522            5 FLHDPSKDIGFVGC-ALA-STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLY-FSNWL-HG   80 (222)
Q Consensus         5 ~afhP~g~~aYvv~-ELs-stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLY-vSnRg-h~   80 (222)
                      +.|+|+|+++++.. .-+ ..|+++..+ .+...  + ++-.    .        ...+....||||++|| +|+|. ..
T Consensus       248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~-~~~~~--~-lt~~----~--------~~~~~~~~spDg~~i~f~s~~~g~~  311 (430)
T PRK00178        248 PAWSPDGSKLAFVLSKDGNPEIYVMDLA-SRQLS--R-VTNH----P--------AIDTEPFWGKDGRTLYFTSDRGGKP  311 (430)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECC-CCCeE--E-cccC----C--------CCcCCeEECCCCCEEEEEECCCCCc
Confidence            57999998766543 332 246666543 34332  1 1111    1        1124567899999876 45553 33


Q ss_pred             cEEEEEe
Q 027522           81 DIRQYNI   87 (222)
Q Consensus        81 sI~vf~i   87 (222)
                      .|.++++
T Consensus       312 ~iy~~d~  318 (430)
T PRK00178        312 QIYKVNV  318 (430)
T ss_pred             eEEEEEC
Confidence            4544444

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.40  E-value=0.014  Score=53.44  Aligned_cols=141  Identities=15%  Similarity=0.198  Sum_probs=74.2

Q ss_pred             EeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC---CCEEEEEeCC-
Q 027522            3 IRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD---DRFLYFSNWL-   78 (222)
Q Consensus         3 vr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD---grfLYvSnRg-   78 (222)
                      .-++|.|+|+. || .|...+|+++..  +|.. ...+..++.-...+.      ...-.|.++|+   .++||++--- 
T Consensus         5 ~~~a~~pdG~l-~v-~e~~G~i~~~~~--~g~~-~~~v~~~~~v~~~~~------~gllgia~~p~f~~n~~lYv~~t~~   73 (331)
T PF07995_consen    5 RSMAFLPDGRL-LV-AERSGRIWVVDK--DGSL-KTPVADLPEVFADGE------RGLLGIAFHPDFASNGYLYVYYTNA   73 (331)
T ss_dssp             EEEEEETTSCE-EE-EETTTEEEEEET--TTEE-CEEEEE-TTTBTSTT------BSEEEEEE-TTCCCC-EEEEEEEEE
T ss_pred             eEEEEeCCCcE-EE-EeCCceEEEEeC--CCcC-cceeccccccccccc------CCcccceeccccCCCCEEEEEEEcc
Confidence            35899999754 66 477999999983  4554 222333321111222      45689999995   7888876541 


Q ss_pred             -------CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEE
Q 027522           79 -------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYV  151 (222)
Q Consensus        79 -------h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyv  151 (222)
                             ...|..|..++. ...+.....+           +.+      .|.. ......    -+.|++.||| +|||
T Consensus        74 ~~~~~~~~~~v~r~~~~~~-~~~~~~~~~l-----------~~~------~p~~-~~~~H~----g~~l~fgpDG-~LYv  129 (331)
T PF07995_consen   74 DEDGGDNDNRVVRFTLSDG-DGDLSSEEVL-----------VTG------LPDT-SSGNHN----GGGLAFGPDG-KLYV  129 (331)
T ss_dssp             -TSSSSEEEEEEEEEEETT-SCEEEEEEEE-----------EEE------EES--CSSSS-----EEEEEE-TTS-EEEE
T ss_pred             cCCCCCcceeeEEEeccCC-ccccccceEE-----------EEE------eCCC-CCCCCC----CccccCCCCC-cEEE
Confidence                   245777777542 2233211111           000      0110 011222    5679999999 8999


Q ss_pred             EeCCCCccccccccccccCCcEEEEEEee
Q 027522          152 TNSLFSAWDCQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       152 aNsl~~~wd~Q~yp~~~s~~~~i~~~dvd  180 (222)
                      +..  +..+.+.-.+..+....|+|++.|
T Consensus       130 s~G--~~~~~~~~~~~~~~~G~ilri~~d  156 (331)
T PF07995_consen  130 SVG--DGGNDDNAQDPNSLRGKILRIDPD  156 (331)
T ss_dssp             EEB---TTTGGGGCSTTSSTTEEEEEETT
T ss_pred             EeC--CCCCcccccccccccceEEEeccc
Confidence            864  233311111233456789998764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.38  E-value=0.0057  Score=57.86  Aligned_cols=71  Identities=11%  Similarity=0.008  Sum_probs=40.1

Q ss_pred             eEEEcCCCCeEEEEeccCc--eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC--CC
Q 027522            4 RFLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW--LH   79 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELss--tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR--gh   79 (222)
                      ...|+|||++++.+..-+.  .|+++..+..+. . .+.++..    .        ...+....||||++|+.+..  +.
T Consensus       285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-~-~~~lt~~----~--------~~~~~p~wSPDG~~Laf~~~~~g~  350 (428)
T PRK01029        285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-S-PRLLTKK----Y--------RNSSCPAWSPDGKKIAFCSVIKGV  350 (428)
T ss_pred             CeEECCCCCEEEEEECCCCCceEEEEECccccc-c-eEEeccC----C--------CCccceeECCCCCEEEEEEcCCCC
Confidence            4689999986555543333  355554432221 1 1222211    0        12356789999998876654  33


Q ss_pred             CcEEEEEec
Q 027522           80 GDIRQYNIE   88 (222)
Q Consensus        80 ~sI~vf~i~   88 (222)
                      ..|.+|+++
T Consensus       351 ~~I~v~dl~  359 (428)
T PRK01029        351 RQICVYDLA  359 (428)
T ss_pred             cEEEEEECC
Confidence            468888774

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.37  E-value=0.0046  Score=58.17  Aligned_cols=68  Identities=16%  Similarity=0.107  Sum_probs=39.4

Q ss_pred             eEEEcCCCCe-EEEEeccC-ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC-
Q 027522            4 RFLHDPSKDI-GFVGCALA-STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG-   80 (222)
Q Consensus         4 r~afhP~g~~-aYvv~ELs-stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~-   80 (222)
                      -.+|+|||+. +|+..+-+ ..|+++..+ .|+.  .+..+.     .        ....+..+||||+.|+++....+ 
T Consensus       203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~-~G~~--~~l~~~-----~--------~~~~~~~~SPDG~~La~~~~~~g~  266 (429)
T PRK03629        203 SPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAV--RQVASF-----P--------RHNGAPAFSPDGSKLAFALSKTGS  266 (429)
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECC-CCCe--EEccCC-----C--------CCcCCeEECCCCCEEEEEEcCCCC
Confidence            4789999865 45544432 346655543 3432  222111     1        12246789999999998755444 


Q ss_pred             -cEEEEEe
Q 027522           81 -DIRQYNI   87 (222)
Q Consensus        81 -sI~vf~i   87 (222)
                       .|.++++
T Consensus       267 ~~I~~~d~  274 (429)
T PRK03629        267 LNLYVMDL  274 (429)
T ss_pred             cEEEEEEC
Confidence             4777766

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.01  Score=54.94  Aligned_cols=119  Identities=16%  Similarity=0.169  Sum_probs=78.3

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeC--CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKT--QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d--~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      .||+|+|=.+-++++-. .|-.|...  ..|=+   +++.+.-.+...|         ++|..|||||++-+|.. ++.|
T Consensus       146 ~AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgPF---~tf~i~~~~~~ew---------~~l~FS~dGK~iLlsT~-~s~~  211 (311)
T KOG1446|consen  146 AAFDPEGLIFALANGSE-LIKLYDLRSFDKGPF---TTFSITDNDEAEW---------TDLEFSPDGKSILLSTN-ASFI  211 (311)
T ss_pred             eeECCCCcEEEEecCCC-eEEEEEecccCCCCc---eeEccCCCCccce---------eeeEEcCCCCEEEEEeC-CCcE
Confidence            48999999998888854 77777543  22323   3444442222334         99999999999999985 4555


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ  162 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q  162 (222)
                      -+.   |..+|.+.+.+..-                        .-.|+-    |=+.+++|||++++.+-         
T Consensus       212 ~~l---DAf~G~~~~tfs~~------------------------~~~~~~----~~~a~ftPds~Fvl~gs---------  251 (311)
T KOG1446|consen  212 YLL---DAFDGTVKSTFSGY------------------------PNAGNL----PLSATFTPDSKFVLSGS---------  251 (311)
T ss_pred             EEE---EccCCcEeeeEeec------------------------cCCCCc----ceeEEECCCCcEEEEec---------
Confidence            555   33456665554430                        012444    77889999999999885         


Q ss_pred             cccccccCCcEEEEEEeeCCCCCe
Q 027522          163 FYPELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       163 ~yp~~~s~~~~i~~~dvd~~~G~l  186 (222)
                             +.+++...++  ++|..
T Consensus       252 -------~dg~i~vw~~--~tg~~  266 (311)
T KOG1446|consen  252 -------DDGTIHVWNL--ETGKK  266 (311)
T ss_pred             -------CCCcEEEEEc--CCCcE
Confidence                   4566666655  66654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.35  E-value=0.0071  Score=55.79  Aligned_cols=66  Identities=14%  Similarity=0.273  Sum_probs=42.6

Q ss_pred             eEEEcCCCCeEEEEe------------ccCceEEEEEe-CCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCC
Q 027522            4 RFLHDPSKDIGFVGC------------ALASTMVRFSK-TQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDR   70 (222)
Q Consensus         4 r~afhP~g~~aYvv~------------ELsstV~~~~~-d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgr   70 (222)
                      =++|.++|+ +||+.            +.++.|.++.. +.+|......++.      ++-      ..+..|++.+|| 
T Consensus        18 ~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa------~~l------~~p~Gi~~~~~G-   83 (367)
T TIGR02604        18 AVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA------EEL------SMVTGLAVAVGG-   83 (367)
T ss_pred             eeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee------cCC------CCccceeEecCC-
Confidence            478899988 67774            34458999975 3456544333322      111      345789999999 


Q ss_pred             EEEEEeCCCCcEEEEE
Q 027522           71 FLYFSNWLHGDIRQYN   86 (222)
Q Consensus        71 fLYvSnRgh~sI~vf~   86 (222)
                       |||+++.  .|..|.
T Consensus        84 -lyV~~~~--~i~~~~   96 (367)
T TIGR02604        84 -VYVATPP--DILFLR   96 (367)
T ss_pred             -EEEeCCC--eEEEEe
Confidence             9999853  466563

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.35  E-value=0.0066  Score=56.90  Aligned_cols=71  Identities=13%  Similarity=0.070  Sum_probs=41.8

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      ..+|+|||+.+++...-+..+-.|.++. .+..   ..++-.      .      ........||||++|+++....+..
T Consensus       252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~---~~lt~~------~------~~~~~~~wSpDG~~i~f~s~~~g~~  316 (429)
T PRK01742        252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP---SQLTSG------A------GNNTEPSWSPDGQSILFTSDRSGSP  316 (429)
T ss_pred             ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe---EeeccC------C------CCcCCEEECCCCCEEEEEECCCCCc
Confidence            3679999998777654455444443432 2332   122111      1      2236788999999877554445667


Q ss_pred             EEEEecC
Q 027522           83 RQYNIED   89 (222)
Q Consensus        83 ~vf~i~d   89 (222)
                      .+|.++.
T Consensus       317 ~I~~~~~  323 (429)
T PRK01742        317 QVYRMSA  323 (429)
T ss_pred             eEEEEEC
Confidence            8888743

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.31  E-value=0.0073  Score=54.96  Aligned_cols=68  Identities=13%  Similarity=-0.017  Sum_probs=39.0

Q ss_pred             eEEEcCCCCeEEEEeccC--ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC-
Q 027522            4 RFLHDPSKDIGFVGCALA--STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG-   80 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELs--stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~-   80 (222)
                      ...|+|+|++++.+..-+  .+|+++... +|+..   .+...    .+        ....+.+||||+.||++....+ 
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~-~g~~~---~~~~~----~~--------~~~~~~~spDg~~l~~~~~~~~~  257 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLA-TGQRE---KVASF----PG--------MNGAPAFSPDGSKLAVSLSKDGN  257 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECC-CCCEE---EeecC----CC--------CccceEECCCCCEEEEEECCCCC
Confidence            457899998776665433  456666542 34332   11111    11        1244789999998877654444 


Q ss_pred             -cEEEEEe
Q 027522           81 -DIRQYNI   87 (222)
Q Consensus        81 -sI~vf~i   87 (222)
                       .|..+++
T Consensus       258 ~~i~~~d~  265 (417)
T TIGR02800       258 PDIYVMDL  265 (417)
T ss_pred             ccEEEEEC
Confidence             4655555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.31  E-value=0.0064  Score=56.91  Aligned_cols=67  Identities=12%  Similarity=0.015  Sum_probs=39.0

Q ss_pred             EEEcCCCCeEEEEeccC--ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC--
Q 027522            5 FLHDPSKDIGFVGCALA--STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG--   80 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELs--stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~--   80 (222)
                      ..|+|+|++++....-+  ..|+++..+ .+..   +.++..    .        ...+....||||++|+++.+..+  
T Consensus       295 ~~~spDG~~i~f~s~~~g~~~Iy~~d~~-g~~~---~~lt~~----~--------~~~~~~~~SpdG~~ia~~~~~~~~~  358 (435)
T PRK05137        295 PSYSPDGSQIVFESDRSGSPQLYVMNAD-GSNP---RRISFG----G--------GRYSTPVWSPRGDLIAFTKQGGGQF  358 (435)
T ss_pred             eeEcCCCCEEEEEECCCCCCeEEEEECC-CCCe---EEeecC----C--------CcccCeEECCCCCEEEEEEcCCCce
Confidence            57899998776655322  346665532 2222   222221    1        11245779999999988776544  


Q ss_pred             cEEEEEe
Q 027522           81 DIRQYNI   87 (222)
Q Consensus        81 sI~vf~i   87 (222)
                      .|.+++.
T Consensus       359 ~i~~~d~  365 (435)
T PRK05137        359 SIGVMKP  365 (435)
T ss_pred             EEEEEEC
Confidence            4555554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.26  E-value=0.0026  Score=59.17  Aligned_cols=104  Identities=22%  Similarity=0.284  Sum_probs=65.8

Q ss_pred             EEEcCCCCeEEEEeccCceEE-EEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC----C
Q 027522            5 FLHDPSKDIGFVGCALASTMV-RFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL----H   79 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~-~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg----h   79 (222)
                      ++|||.-+++-+..---.|-. +|.+  ++.-+.....+...+.|=|           .=..|||||+||++--.    -
T Consensus        73 i~~~p~~~ravafARrPGtf~~vfD~--~~~~~pv~~~s~~~RHfyG-----------HGvfs~dG~~LYATEndfd~~r  139 (366)
T COG3490          73 IAFHPALPRAVAFARRPGTFAMVFDP--NGAQEPVTLVSQEGRHFYG-----------HGVFSPDGRLLYATENDFDPNR  139 (366)
T ss_pred             eecCCCCcceEEEEecCCceEEEECC--CCCcCcEEEecccCceeec-----------ccccCCCCcEEEeecCCCCCCC
Confidence            467887777666655555533 3333  2322222222333333322           33689999999998653    4


Q ss_pred             CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           80 GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        80 ~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                      |-|-+||..  .+-.-++++++-|                           -    ||-.|.|.+||+.|.|||-
T Consensus       140 GViGvYd~r--~~fqrvgE~~t~G---------------------------i----GpHev~lm~DGrtlvvanG  181 (366)
T COG3490         140 GVIGVYDAR--EGFQRVGEFSTHG---------------------------I----GPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ceEEEEecc--cccceecccccCC---------------------------c----CcceeEEecCCcEEEEeCC
Confidence            679999884  2344456656543                           3    3889999999999999993

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.26  E-value=0.0078  Score=56.34  Aligned_cols=68  Identities=15%  Similarity=0.099  Sum_probs=38.0

Q ss_pred             eEEEcCCCCe-EEEEecc-CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC--
Q 027522            4 RFLHDPSKDI-GFVGCAL-ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH--   79 (222)
Q Consensus         4 r~afhP~g~~-aYvv~EL-sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh--   79 (222)
                      -..|+|||+. +|+-.+- ..+|+++..+ .|..   +.++-.    .        .......+||||+.|+++....  
T Consensus       206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~-~g~~---~~l~~~----~--------g~~~~~~~SPDG~~la~~~~~~g~  269 (435)
T PRK05137        206 TPRFSPNRQEITYMSYANGRPRVYLLDLE-TGQR---ELVGNF----P--------GMTFAPRFSPDGRKVVMSLSQGGN  269 (435)
T ss_pred             eeEECCCCCEEEEEEecCCCCEEEEEECC-CCcE---EEeecC----C--------CcccCcEECCCCCEEEEEEecCCC
Confidence            4678999975 4554332 3567776653 3432   222211    1        1234678999999886554333  


Q ss_pred             CcEEEEEe
Q 027522           80 GDIRQYNI   87 (222)
Q Consensus        80 ~sI~vf~i   87 (222)
                      ..|.++++
T Consensus       270 ~~Iy~~d~  277 (435)
T PRK05137        270 TDIYTMDL  277 (435)
T ss_pred             ceEEEEEC
Confidence            34655555

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.18  E-value=0.011  Score=54.49  Aligned_cols=105  Identities=20%  Similarity=0.346  Sum_probs=72.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeC-CCCCeeEEE-EEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEV-AISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d-~~g~~~~~q-~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      ++|+||++.+|+.-=..+.|+++.++ .+|...... .+....          -+..+=-+.+..||.+-.++.|+-+.|
T Consensus       168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~----------~~G~PDG~~vDadG~lw~~a~~~g~~v  237 (307)
T COG3386         168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE----------EPGLPDGMAVDADGNLWVAAVWGGGRV  237 (307)
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC----------CCCCCCceEEeCCCCEEEecccCCceE
Confidence            68999999999999999999999886 334332221 122211          013445688999998777777766789


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEE-CCCCCEEEEEeC
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL-SLDGKRLYVTNS  154 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~l-spdGk~LyvaNs  154 (222)
                      .+|   +|+ +++++++.+--                           ++    |-+.++ .|+++.|||+++
T Consensus       238 ~~~---~pd-G~l~~~i~lP~---------------------------~~----~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         238 VRF---NPD-GKLLGEIKLPV---------------------------KR----PTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EEE---CCC-CcEEEEEECCC---------------------------CC----CccceEeCCCcCEEEEEec
Confidence            999   555 88888887610                           11    445555 667899999984

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.18  E-value=0.0029  Score=58.18  Aligned_cols=50  Identities=34%  Similarity=0.617  Sum_probs=37.5

Q ss_pred             CeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecC---CCCCC
Q 027522          137 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFE---AEPDG  202 (222)
Q Consensus       137 Pr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~---~~~~g  202 (222)
                      |+-+++|||||.||+|-               +....+.+++.|..+|.. -+..-.++|.   +.|||
T Consensus       165 ~NGla~SpDg~tly~aD---------------T~~~~i~r~~~d~~~g~~-~~~~~~~~~~~~~G~PDG  217 (307)
T COG3386         165 PNGLAFSPDGKTLYVAD---------------TPANRIHRYDLDPATGPI-GGRRGFVDFDEEPGLPDG  217 (307)
T ss_pred             cCceEECCCCCEEEEEe---------------CCCCeEEEEecCcccCcc-CCcceEEEccCCCCCCCc
Confidence            99999999999999998               567888888888766654 3334456664   44555

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.18  E-value=0.017  Score=46.01  Aligned_cols=99  Identities=15%  Similarity=0.144  Sum_probs=65.6

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .+.|+|+++.+++.+. ++.|.+|.... ++  ..+.+...            ......+.+++|+++++++. ..+.|.
T Consensus       182 ~~~~~~~~~~l~~~~~-~~~i~i~d~~~-~~--~~~~~~~~------------~~~i~~~~~~~~~~~~~~~~-~~~~i~  244 (289)
T cd00200         182 SVAFSPDGEKLLSSSS-DGTIKLWDLST-GK--CLGTLRGH------------ENGVNSVAFSPDGYLLASGS-EDGTIR  244 (289)
T ss_pred             eEEECCCcCEEEEecC-CCcEEEEECCC-Cc--eecchhhc------------CCceEEEEEcCCCcEEEEEc-CCCcEE
Confidence            4789999988888887 88888887642 21  11111110            13468899999977776665 578999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   .+....+..  .                         ..    ....++++++|++|+++.
T Consensus       245 i~~~~~---~~~~~~~~~--~-------------------------~~----~i~~~~~~~~~~~l~~~~  280 (289)
T cd00200         245 VWDLRT---GECVQTLSG--H-------------------------TN----SVTSLAWSPDGKRLASGS  280 (289)
T ss_pred             EEEcCC---ceeEEEccc--c-------------------------CC----cEEEEEECCCCCEEEEec
Confidence            999843   333322221  0                         11    267899999999999887

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.15  E-value=0.0062  Score=57.18  Aligned_cols=87  Identities=17%  Similarity=0.242  Sum_probs=59.9

Q ss_pred             EEEcCCCCeEEEEeccCc---------eEEEEEeCCCCCeeEEEEEEecCc-ccccccCCCCCCceeEEEEcCCCCEEEE
Q 027522            5 FLHDPSKDIGFVGCALAS---------TMVRFSKTQDGSWNHEVAISVKSL-KVQNWILPEMPGLITDFLISLDDRFLYF   74 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELss---------tV~~~~~d~~g~~~~~q~is~~p~-~~~g~~~~~~~~~~adI~iSpDgrfLYv   74 (222)
                      ++.+|+++..|+.+=.=+         -|.+|  | .-+++.+.-|.+|++ -+.--      .....+.+|.|||||||
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~--D-~~TL~~~~EI~iP~k~R~~~~------~~~~~~~ls~dgk~~~V  111 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIW--D-TQTLSPTGEIEIPPKPRAQVV------PYKNMFALSADGKFLYV  111 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEE--E-TTTTEEEEEEEETTS-B--BS--------GGGEEE-TTSSEEEE
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEE--e-cCcCcccceEecCCcchheec------ccccceEEccCCcEEEE
Confidence            678999999999764222         13333  2 236888888999976 33211      34567899999999999


Q ss_pred             EeCC-CCcEEEEEecCCCCCeEEEEEEecc
Q 027522           75 SNWL-HGDIRQYNIEDPKNPVLTGQIWVGG  103 (222)
Q Consensus        75 SnRg-h~sI~vf~i~d~~~~~L~~~v~~gG  103 (222)
                      .|-- .-||.|.|+..   .+.++.|.+-|
T Consensus       112 ~N~TPa~SVtVVDl~~---~kvv~ei~~PG  138 (342)
T PF06433_consen  112 QNFTPATSVTVVDLAA---KKVVGEIDTPG  138 (342)
T ss_dssp             EEESSSEEEEEEETTT---TEEEEEEEGTS
T ss_pred             EccCCCCeEEEEECCC---CceeeeecCCC
Confidence            9996 47899998843   77888888865

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.10  E-value=0.052  Score=43.26  Aligned_cols=69  Identities=17%  Similarity=0.238  Sum_probs=48.9

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .+.|+|+++++++..+ +++|.+|..+. ++  ..+.....    .        .....+..++++++|+++.. .+.|.
T Consensus        14 ~~~~~~~~~~l~~~~~-~g~i~i~~~~~-~~--~~~~~~~~----~--------~~i~~~~~~~~~~~l~~~~~-~~~i~   76 (289)
T cd00200          14 CVAFSPDGKLLATGSG-DGTIKVWDLET-GE--LLRTLKGH----T--------GPVRDVAASADGTYLASGSS-DKTIR   76 (289)
T ss_pred             EEEEcCCCCEEEEeec-CcEEEEEEeeC-CC--cEEEEecC----C--------cceeEEEECCCCCEEEEEcC-CCeEE
Confidence            4689999999998887 78888887752 22  11111111    0        22368999999999988775 78999


Q ss_pred             EEEecC
Q 027522           84 QYNIED   89 (222)
Q Consensus        84 vf~i~d   89 (222)
                      +|++..
T Consensus        77 i~~~~~   82 (289)
T cd00200          77 LWDLET   82 (289)
T ss_pred             EEEcCc
Confidence            999954

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.06  E-value=0.045  Score=46.43  Aligned_cols=102  Identities=17%  Similarity=0.157  Sum_probs=61.9

Q ss_pred             eEeEEEcCCCCeEEEEeccC---------ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEE
Q 027522            2 QIRFLHDPSKDIGFVGCALA---------STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFL   72 (222)
Q Consensus         2 evr~afhP~g~~aYvv~ELs---------stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfL   72 (222)
                      ++.|.+||+|.++-|...-.         ++...|..+..+  .....+.+..   +        +.+.++.-||+|+.+
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--~~~~~i~l~~---~--------~~I~~~~WsP~g~~f   74 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--IPVESIELKK---E--------GPIHDVAWSPNGNEF   74 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--CccceeeccC---C--------CceEEEEECcCCCEE
Confidence            68899999999988877711         112222222111  1112222211   1        236899999999887


Q ss_pred             EEEe-CCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEE
Q 027522           73 YFSN-WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYV  151 (222)
Q Consensus        73 YvSn-Rgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyv  151 (222)
                      .|.. .....|..|++.    .+.+.++..                             ..    .+.+..||+|++|.+
T Consensus        75 avi~g~~~~~v~lyd~~----~~~i~~~~~-----------------------------~~----~n~i~wsP~G~~l~~  117 (194)
T PF08662_consen   75 AVIYGSMPAKVTLYDVK----GKKIFSFGT-----------------------------QP----RNTISWSPDGRFLVL  117 (194)
T ss_pred             EEEEccCCcccEEEcCc----ccEeEeecC-----------------------------CC----ceEEEECCCCCEEEE
Confidence            6653 345689999883    333222211                             11    457899999999999


Q ss_pred             Ee
Q 027522          152 TN  153 (222)
Q Consensus       152 aN  153 (222)
                      |.
T Consensus       118 ~g  119 (194)
T PF08662_consen  118 AG  119 (194)
T ss_pred             EE
Confidence            85

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.04  E-value=0.058  Score=51.19  Aligned_cols=69  Identities=17%  Similarity=0.108  Sum_probs=39.4

Q ss_pred             EeEEEcCCCCe-EE-EEecc-CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC--
Q 027522            3 IRFLHDPSKDI-GF-VGCAL-ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW--   77 (222)
Q Consensus         3 vr~afhP~g~~-aY-vv~EL-sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR--   77 (222)
                      +-..|+|+|++ +| +.++- ...|+++... .|+-  .+... .    .|        ....-.+||||+.|.++-.  
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~-tg~~--~~lt~-~----~g--------~~~~~~~SPDG~~la~~~~~~  254 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLY-TGKK--EKIAS-S----QG--------MLVVSDVSKDGSKLLLTMAPK  254 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECC-CCcE--EEEec-C----CC--------cEEeeEECCCCCEEEEEEccC
Confidence            34679999984 44 56663 5678887653 3432  22222 1    22        1233458999998865433  


Q ss_pred             CCCcEEEEEe
Q 027522           78 LHGDIRQYNI   87 (222)
Q Consensus        78 gh~sI~vf~i   87 (222)
                      +...|.++++
T Consensus       255 g~~~Iy~~dl  264 (419)
T PRK04043        255 GQPDIYLYDT  264 (419)
T ss_pred             CCcEEEEEEC
Confidence            2345666665

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.89  E-value=0.015  Score=55.33  Aligned_cols=111  Identities=18%  Similarity=0.229  Sum_probs=70.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+| ...+-+=.+.+|.+|... +|  +...++..-.            ...+.|.+++||++|.++.. .+.|++
T Consensus       252 ~~f~p~g-~~i~Sgs~D~tvriWd~~-~~--~~~~~l~~hs------------~~is~~~f~~d~~~l~s~s~-d~~i~v  314 (456)
T KOG0266|consen  252 VAFSPDG-NLLVSGSDDGTVRIWDVR-TG--ECVRKLKGHS------------DGISGLAFSPDGNLLVSASY-DGTIRV  314 (456)
T ss_pred             EEecCCC-CEEEEecCCCcEEEEecc-CC--eEEEeeeccC------------CceEEEEECCCCCEEEEcCC-CccEEE
Confidence            5799999 555666678999988764 23  2223332211            23589999999999999976 899999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe--CCCCccccc
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN--SLFSAWDCQ  162 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN--sl~~~wd~Q  162 (222)
                      |++.. +.-.++..+.-                            ..... --+.++++|+|++|+++.  +..+.||-+
T Consensus       315 wd~~~-~~~~~~~~~~~----------------------------~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  315 WDLET-GSKLCLKLLSG----------------------------AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLR  364 (456)
T ss_pred             EECCC-CceeeeecccC----------------------------CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence            99843 21101111110                            12200 027899999999999884  455556554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=96.75  E-value=0.0092  Score=61.31  Aligned_cols=62  Identities=23%  Similarity=0.322  Sum_probs=50.3

Q ss_pred             CCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCC
Q 027522           56 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG  135 (222)
Q Consensus        56 ~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~g  135 (222)
                      +.+..+|+.+|||||||-.++ .+.+|++|||-   ++.|+.-+.+-                            ..   
T Consensus       575 h~nritd~~FS~DgrWlisas-mD~tIr~wDlp---t~~lID~~~vd----------------------------~~---  619 (910)
T KOG1539|consen  575 HGNRITDMTFSPDGRWLISAS-MDSTIRTWDLP---TGTLIDGLLVD----------------------------SP---  619 (910)
T ss_pred             cccceeeeEeCCCCcEEEEee-cCCcEEEEecc---CcceeeeEecC----------------------------Cc---
Confidence            448899999999999997776 68899999993   36787666651                            11   


Q ss_pred             CCeeEEECCCCCEEEEEe
Q 027522          136 GPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus       136 gPr~~~lspdGk~LyvaN  153 (222)
                       +-.+.+||+|.+|..++
T Consensus       620 -~~sls~SPngD~LAT~H  636 (910)
T KOG1539|consen  620 -CTSLSFSPNGDFLATVH  636 (910)
T ss_pred             -ceeeEECCCCCEEEEEE
Confidence             56899999999999998

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=96.73  E-value=0.0037  Score=61.56  Aligned_cols=98  Identities=20%  Similarity=0.250  Sum_probs=68.1

Q ss_pred             EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522            6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY   85 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf   85 (222)
                      ..+|||+.+-|..| .|||.+|...+ -+...+..  ++.          -...+.++.||||-+..|.|| .+|.|++|
T Consensus       472 kL~pdgrtLivGGe-astlsiWDLAa-pTprikae--lts----------sapaCyALa~spDakvcFscc-sdGnI~vw  536 (705)
T KOG0639|consen  472 KLLPDGRTLIVGGE-ASTLSIWDLAA-PTPRIKAE--LTS----------SAPACYALAISPDAKVCFSCC-SDGNIAVW  536 (705)
T ss_pred             EecCCCceEEeccc-cceeeeeeccC-CCcchhhh--cCC----------cchhhhhhhcCCccceeeeec-cCCcEEEE
Confidence            46899999999999 78999997742 12221111  111          013468999999999998887 57899999


Q ss_pred             EecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE
Q 027522           86 NIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT  152 (222)
Q Consensus        86 ~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva  152 (222)
                      |+-+   ..+|++..-                    ++           .|...+.+|+||.+|+-.
T Consensus       537 DLhn---q~~VrqfqG--------------------ht-----------DGascIdis~dGtklWTG  569 (705)
T KOG0639|consen  537 DLHN---QTLVRQFQG--------------------HT-----------DGASCIDISKDGTKLWTG  569 (705)
T ss_pred             Eccc---ceeeecccC--------------------CC-----------CCceeEEecCCCceeecC
Confidence            9954   445444331                    11           235689999999999866

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=96.72  E-value=0.031  Score=52.62  Aligned_cols=68  Identities=24%  Similarity=0.224  Sum_probs=49.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      +.|++.|.++-|.|. ++.|..|.++.   +..-   .++.+..         -..+-+.-|+|||+|..|.| +.+|.+
T Consensus        29 ~~Fs~~G~~lAvGc~-nG~vvI~D~~T---~~ia---r~lsaH~---------~pi~sl~WS~dgr~LltsS~-D~si~l   91 (405)
T KOG1273|consen   29 CQFSRWGDYLAVGCA-NGRVVIYDFDT---FRIA---RMLSAHV---------RPITSLCWSRDGRKLLTSSR-DWSIKL   91 (405)
T ss_pred             EEeccCcceeeeecc-CCcEEEEEccc---cchh---hhhhccc---------cceeEEEecCCCCEeeeecC-CceeEE
Confidence            569999999999998 67777777642   2211   2222221         12478999999999999887 679999


Q ss_pred             EEecC
Q 027522           85 YNIED   89 (222)
Q Consensus        85 f~i~d   89 (222)
                      ||+.+
T Consensus        92 wDl~~   96 (405)
T KOG1273|consen   92 WDLLK   96 (405)
T ss_pred             EeccC
Confidence            99965

>PTZ00420 coronin; Provisional

Probab=96.70  E-value=0.091  Score=52.29  Aligned_cols=114  Identities=12%  Similarity=0.091  Sum_probs=69.3

Q ss_pred             eEEEcCC-CCeEEEEeccCceEEEEEeCCCCCe-eEE-EEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            4 RFLHDPS-KDIGFVGCALASTMVRFSKTQDGSW-NHE-VAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         4 r~afhP~-g~~aYvv~ELsstV~~~~~d~~g~~-~~~-q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      -++|||+ +..+...++ +++|.+|.....+.. ... ..+...    .+.     ......|..||+++.+.+|.-.++
T Consensus        79 ~lafsP~~~~lLASgS~-DgtIrIWDi~t~~~~~~~i~~p~~~L----~gH-----~~~V~sVaf~P~g~~iLaSgS~Dg  148 (568)
T PTZ00420         79 DLQFNPCFSEILASGSE-DLTIRVWEIPHNDESVKEIKDPQCIL----KGH-----KKKISIIDWNPMNYYIMCSSGFDS  148 (568)
T ss_pred             EEEEcCCCCCEEEEEeC-CCeEEEEECCCCCccccccccceEEe----ecC-----CCcEEEEEECCCCCeEEEEEeCCC
Confidence            3678997 566666655 888888876422211 100 011111    111     144689999999999888877789


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe--CCCCc
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN--SLFSA  158 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN--sl~~~  158 (222)
                      .|.+|++..   ++.+-.+..                            +..    ...++++|||+.|.++.  .-..-
T Consensus       149 tIrIWDl~t---g~~~~~i~~----------------------------~~~----V~SlswspdG~lLat~s~D~~IrI  193 (568)
T PTZ00420        149 FVNIWDIEN---EKRAFQINM----------------------------PKK----LSSLKWNIKGNLLSGTCVGKHMHI  193 (568)
T ss_pred             eEEEEECCC---CcEEEEEec----------------------------CCc----EEEEEECCCCCEEEEEecCCEEEE
Confidence            999999953   333222221                            111    56889999999887764  23344


Q ss_pred             cccc
Q 027522          159 WDCQ  162 (222)
Q Consensus       159 wd~Q  162 (222)
                      ||-.
T Consensus       194 wD~R  197 (568)
T PTZ00420        194 IDPR  197 (568)
T ss_pred             EECC
Confidence            5543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.66  E-value=0.03  Score=53.10  Aligned_cols=56  Identities=9%  Similarity=-0.041  Sum_probs=31.9

Q ss_pred             EEEcCCCCeEEEEeccCc--eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC
Q 027522            5 FLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL   78 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELss--tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg   78 (222)
                      ..|+|||+.+|.+..-..  .|+++..+ .|+.  ++ ++.     .+.         ....+||||++|..+.+.
T Consensus       282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-~g~~--~r-lt~-----~g~---------~~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        282 GNFVEDDKRIVFVSDRLGYPNIFMKKLN-SGSV--EQ-VVF-----HGK---------NNSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             cEECCCCCEEEEEECCCCCceEEEEECC-CCCe--Ee-Ccc-----CCC---------cCceECCCCCEEEEEEcC
Confidence            469999987766664333  36555543 3333  12 221     121         123799999988766553

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.66  E-value=0.018  Score=55.63  Aligned_cols=71  Identities=13%  Similarity=0.158  Sum_probs=47.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      +.|+++|++.-...- ++|...|.-..+++++...+..-..            ...+-|.-|||+|+|-+|. -.+.++.
T Consensus       230 l~FS~nGkyLAsaSk-D~Taiiw~v~~d~~~kl~~tlvgh~------------~~V~yi~wSPDdryLlaCg-~~e~~~l  295 (519)
T KOG0293|consen  230 LQFSHNGKYLASASK-DSTAIIWIVVYDVHFKLKKTLVGHS------------QPVSYIMWSPDDRYLLACG-FDEVLSL  295 (519)
T ss_pred             EEEcCCCeeEeeccC-CceEEEEEEecCcceeeeeeeeccc------------CceEEEEECCCCCeEEecC-chHheee
Confidence            469999997665543 4554444443456666666543221            3358999999999996655 4667999


Q ss_pred             EEecC
Q 027522           85 YNIED   89 (222)
Q Consensus        85 f~i~d   89 (222)
                      |+++.
T Consensus       296 wDv~t  300 (519)
T KOG0293|consen  296 WDVDT  300 (519)
T ss_pred             ccCCc
Confidence            99853

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.49  E-value=0.13  Score=49.10  Aligned_cols=98  Identities=16%  Similarity=0.199  Sum_probs=64.9

Q ss_pred             eEEEcCCCCeEEEEe-ccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGC-ALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~-ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      +++|+|+++  |+++ -.+.+|-+|.-..++  ...+++.       |     +++....+.++|+| -+.+|...+++|
T Consensus       208 ~~~fs~d~~--~l~s~s~D~tiriwd~~~~~--~~~~~l~-------g-----H~~~v~~~~f~p~g-~~i~Sgs~D~tv  270 (456)
T KOG0266|consen  208 DVAFSPDGS--YLLSGSDDKTLRIWDLKDDG--RNLKTLK-------G-----HSTYVTSVAFSPDG-NLLVSGSDDGTV  270 (456)
T ss_pred             eeEECCCCc--EEEEecCCceEEEeeccCCC--eEEEEec-------C-----CCCceEEEEecCCC-CEEEEecCCCcE
Confidence            578999999  4433 356667777652222  2223322       1     12556999999999 788999999999


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT  152 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva  152 (222)
                      ++|++..   ++++..+....                               ++=..+.+++||..|.++
T Consensus       271 riWd~~~---~~~~~~l~~hs-------------------------------~~is~~~f~~d~~~l~s~  306 (456)
T KOG0266|consen  271 RIWDVRT---GECVRKLKGHS-------------------------------DGISGLAFSPDGNLLVSA  306 (456)
T ss_pred             EEEeccC---CeEEEeeeccC-------------------------------CceEEEEECCCCCEEEEc
Confidence            9999953   55544444310                               013567899999988777

>PTZ00421 coronin; Provisional

Probab=96.41  E-value=0.11  Score=50.54  Aligned_cols=106  Identities=14%  Similarity=0.090  Sum_probs=63.3

Q ss_pred             eEEEcC-CCCeEEEEeccCceEEEEEeCCCCCe-eEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522            4 RFLHDP-SKDIGFVGCALASTMVRFSKTQDGSW-NHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD   81 (222)
Q Consensus         4 r~afhP-~g~~aYvv~ELsstV~~~~~d~~g~~-~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s   81 (222)
                      -+.|+| ++++++..++ +.+|.+|.....+.- .....+..+    .+.     ......|.++|++..+.+|.-..+.
T Consensus        80 ~v~fsP~d~~~LaSgS~-DgtIkIWdi~~~~~~~~~~~~l~~L----~gH-----~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         80 DVAFNPFDPQKLFTASE-DGTIMGWGIPEEGLTQNISDPIVHL----QGH-----TKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             EEEEcCCCCCEEEEEeC-CCEEEEEecCCCccccccCcceEEe----cCC-----CCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            478999 7777766665 889988876432210 000111111    121     1346889999997544555545789


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |.+|++..   ++.+..+..  .                         ..    .-+.++++|||+.|+.+.
T Consensus       150 VrIWDl~t---g~~~~~l~~--h-------------------------~~----~V~sla~spdG~lLatgs  187 (493)
T PTZ00421        150 VNVWDVER---GKAVEVIKC--H-------------------------SD----QITSLEWNLDGSLLCTTS  187 (493)
T ss_pred             EEEEECCC---CeEEEEEcC--C-------------------------CC----ceEEEEEECCCCEEEEec
Confidence            99999953   333222211  0                         11    156789999999887764

>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical

Probab=96.32  E-value=0.022  Score=38.07  Aligned_cols=38  Identities=24%  Similarity=0.431  Sum_probs=30.2

Q ss_pred             eeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEE
Q 027522           60 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW  100 (222)
Q Consensus        60 ~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~  100 (222)
                      +.+|.+  .|.++|++.+. +.+.++||++|.+|++++++.
T Consensus         4 a~~v~v--~g~yaYva~~~-~Gl~IvDISnPs~P~~v~~~~   41 (42)
T PF08309_consen    4 ARDVAV--SGNYAYVADGN-NGLVIVDISNPSNPVLVGSYD   41 (42)
T ss_pred             EEEEEE--ECCEEEEEeCC-CCEEEEECCCCCCCEEEEEec
Confidence            345444  57799999765 568999999999999998875

The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=96.18  E-value=0.55  Score=43.51  Aligned_cols=69  Identities=14%  Similarity=0.252  Sum_probs=51.8

Q ss_pred             eEEEcCCCCeEEEEec-cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCA-LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~E-LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      +.|++|.|+  |+.++ .++|+..+++. +|.|+-..++.=.    +        +..--+..|++|+||-.+.|. .++
T Consensus        66 svAwsp~g~--~La~aSFD~t~~Iw~k~-~~efecv~~lEGH----E--------nEVK~Vaws~sG~~LATCSRD-KSV  129 (312)
T KOG0645|consen   66 SVAWSPHGR--YLASASFDATVVIWKKE-DGEFECVATLEGH----E--------NEVKCVAWSASGNYLATCSRD-KSV  129 (312)
T ss_pred             eeeecCCCc--EEEEeeccceEEEeecC-CCceeEEeeeecc----c--------cceeEEEEcCCCCEEEEeeCC-CeE
Confidence            478999999  55555 78999999874 6788764443321    2        345678999999999888885 589


Q ss_pred             EEEEec
Q 027522           83 RQYNIE   88 (222)
Q Consensus        83 ~vf~i~   88 (222)
                      ++|.++
T Consensus       130 WiWe~d  135 (312)
T KOG0645|consen  130 WIWEID  135 (312)
T ss_pred             EEEEec
Confidence            999996

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=96.18  E-value=0.081  Score=50.02  Aligned_cols=110  Identities=17%  Similarity=0.191  Sum_probs=72.7

Q ss_pred             EeEEEcCCCCeEEEEeccCceEEEEEeC--CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            3 IRFLHDPSKDIGFVGCALASTMVRFSKT--QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         3 vr~afhP~g~~aYvv~ELsstV~~~~~d--~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      .|.+|.||.+-+-|-+.-++++.+|..+  ++|.+....+- +-...+...-    ....-+|-|--.++|+ .|+-...
T Consensus       136 T~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~-~D~~~f~~kh----~v~~i~iGiA~~~k~i-msas~dt  209 (420)
T KOG2096|consen  136 TRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVH-IDNLEFERKH----QVDIINIGIAGNAKYI-MSASLDT  209 (420)
T ss_pred             eEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCccccc-ccccccchhc----ccceEEEeecCCceEE-EEecCCC
Confidence            5889999999999999999999999764  45655432210 0000011100    0224567777777877 5666788


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .|..|+.    ++++.+.|.+...                           .    --|-++||+||||.++-
T Consensus       210 ~i~lw~l----kGq~L~~idtnq~---------------------------~----n~~aavSP~GRFia~~g  247 (420)
T KOG2096|consen  210 KICLWDL----KGQLLQSIDTNQS---------------------------S----NYDAAVSPDGRFIAVSG  247 (420)
T ss_pred             cEEEEec----CCceeeeeccccc---------------------------c----ccceeeCCCCcEEEEec
Confidence            9999976    2777777776211                           1    34789999999998874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.10  E-value=0.055  Score=55.02  Aligned_cols=100  Identities=20%  Similarity=0.253  Sum_probs=64.8

Q ss_pred             Ee-EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522            3 IR-FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD   81 (222)
Q Consensus         3 vr-~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s   81 (222)
                      |+ ..||||..|+... -.+-||-.|.-. .|.-     +.+    |.|..     +....+++||+|||| +|.--.+.
T Consensus       538 V~cv~FHPNs~Y~aTG-SsD~tVRlWDv~-~G~~-----VRi----F~GH~-----~~V~al~~Sp~Gr~L-aSg~ed~~  600 (707)
T KOG0263|consen  538 VDCVSFHPNSNYVATG-SSDRTVRLWDVS-TGNS-----VRI----FTGHK-----GPVTALAFSPCGRYL-ASGDEDGL  600 (707)
T ss_pred             cceEEECCcccccccC-CCCceEEEEEcC-CCcE-----EEE----ecCCC-----CceEEEEEcCCCceE-eecccCCc
Confidence            55 6899999877666 345556666542 3321     222    23432     457999999999999 77777899


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |-+||+..   ++++.+...                             .  .|.--.+.+|.||..|.++.
T Consensus       601 I~iWDl~~---~~~v~~l~~-----------------------------H--t~ti~SlsFS~dg~vLasgg  638 (707)
T KOG0263|consen  601 IKIWDLAN---GSLVKQLKG-----------------------------H--TGTIYSLSFSRDGNVLASGG  638 (707)
T ss_pred             EEEEEcCC---Ccchhhhhc-----------------------------c--cCceeEEEEecCCCEEEecC
Confidence            99999943   333322111                             0  11133589999999998886

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=96.10  E-value=0.061  Score=49.31  Aligned_cols=97  Identities=13%  Similarity=0.138  Sum_probs=66.7

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ..|+-+|++.|...| +.+|-++....   +...+....+             +....|.|+|+..-|.++.. .+.|++
T Consensus        89 VgF~~dgrWMyTgse-Dgt~kIWdlR~---~~~qR~~~~~-------------spVn~vvlhpnQteLis~dq-sg~irv  150 (311)
T KOG0315|consen   89 VGFQCDGRWMYTGSE-DGTVKIWDLRS---LSCQRNYQHN-------------SPVNTVVLHPNQTELISGDQ-SGNIRV  150 (311)
T ss_pred             EEEeecCeEEEecCC-CceEEEEeccC---cccchhccCC-------------CCcceEEecCCcceEEeecC-CCcEEE
Confidence            469999999999999 77877776532   2211111211             34578999999999988875 678999


Q ss_pred             EEecCC-CCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~-~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ||+... ..-.|   ++                       +.    +..    -|.+++.|||+.|.++|
T Consensus       151 WDl~~~~c~~~l---iP-----------------------e~----~~~----i~sl~v~~dgsml~a~n  186 (311)
T KOG0315|consen  151 WDLGENSCTHEL---IP-----------------------ED----DTS----IQSLTVMPDGSMLAAAN  186 (311)
T ss_pred             EEccCCcccccc---CC-----------------------CC----Ccc----eeeEEEcCCCcEEEEec
Confidence            999542 22223   11                       11    122    57899999999999999

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=96.10  E-value=0.12  Score=51.33  Aligned_cols=70  Identities=17%  Similarity=0.190  Sum_probs=50.2

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      .|+||++..+-|..| ++.|.+|.... +.+..+.+ .+.   ..        +.+++|..|||+.|| +++-.+..+.+
T Consensus       449 vAv~~~~~~vaVGG~-Dgkvhvysl~g-~~l~ee~~-~~~---h~--------a~iT~vaySpd~~yl-a~~Da~rkvv~  513 (603)
T KOG0318|consen  449 VAVSPDGSEVAVGGQ-DGKVHVYSLSG-DELKEEAK-LLE---HR--------AAITDVAYSPDGAYL-AAGDASRKVVL  513 (603)
T ss_pred             EEEcCCCCEEEEecc-cceEEEEEecC-Ccccceee-eec---cc--------CCceEEEECCCCcEE-EEeccCCcEEE
Confidence            578999999999888 56688887753 33322211 111   11        457999999999999 55567899999


Q ss_pred             EEecC
Q 027522           85 YNIED   89 (222)
Q Consensus        85 f~i~d   89 (222)
                      |++..
T Consensus       514 yd~~s  518 (603)
T KOG0318|consen  514 YDVAS  518 (603)
T ss_pred             EEccc
Confidence            99965

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.06  E-value=0.25  Score=47.13  Aligned_cols=75  Identities=20%  Similarity=0.309  Sum_probs=50.3

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecC-CceeeeeCCCCCCCCCCccccCcccCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKG-SPVVAVTDDGQPYQSDVPEVQGHRLRGG  136 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~-~~~~~~~~~~~~~~p~~~~v~G~~~~gg  136 (222)
                      ...|.+.+|+||..|-.+.--.--|+||.|.+   +.++-+      |+|+ -+|.+.                      
T Consensus       174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~---G~kl~e------FRRG~~~~~Iy----------------------  222 (391)
T KOG2110|consen  174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPE---GQKLYE------FRRGTYPVSIY----------------------  222 (391)
T ss_pred             CceeEEEECCCCCEEEEeccCceEEEEEEcCC---ccEeee------eeCCceeeEEE----------------------
Confidence            34699999999999975544334689999954   333222      2221 111222                      


Q ss_pred             CeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 027522          137 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV  179 (222)
Q Consensus       137 Pr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dv  179 (222)
                        .+++|||+++|-++.+              ++.+++|+++-
T Consensus       223 --SL~Fs~ds~~L~~sS~--------------TeTVHiFKL~~  249 (391)
T KOG2110|consen  223 --SLSFSPDSQFLAASSN--------------TETVHIFKLEK  249 (391)
T ss_pred             --EEEECCCCCeEEEecC--------------CCeEEEEEecc
Confidence              4789999999988852              67888998854

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=95.92  E-value=0.062  Score=53.26  Aligned_cols=134  Identities=18%  Similarity=0.256  Sum_probs=84.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      .+|+|+|+++-..| ++.+|-.|.+   |.|....++-+-.+.-.|       ..++-|.+|+||++| .|--.++++.+
T Consensus       323 C~~nrdg~~iAagc-~DGSIQ~W~~---~~~~v~p~~~vk~AH~~g-------~~Itsi~FS~dg~~L-lSRg~D~tLKv  390 (641)
T KOG0772|consen  323 CAWNRDGKLIAAGC-LDGSIQIWDK---GSRTVRPVMKVKDAHLPG-------QDITSISFSYDGNYL-LSRGFDDTLKV  390 (641)
T ss_pred             eecCCCcchhhhcc-cCCceeeeec---CCcccccceEeeeccCCC-------CceeEEEeccccchh-hhccCCCceee
Confidence            58999999944444 7888988876   456555555444333222       357899999999998 44445799999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY  164 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y  164 (222)
                      |++.....+.+   +++|                   .|+..  .       --+.++|||.+.++...|+      +. 
T Consensus       391 WDLrq~kkpL~---~~tg-------------------L~t~~--~-------~tdc~FSPd~kli~TGtS~------~~-  432 (641)
T KOG0772|consen  391 WDLRQFKKPLN---VRTG-------------------LPTPF--P-------GTDCCFSPDDKLILTGTSA------PN-  432 (641)
T ss_pred             eeccccccchh---hhcC-------------------CCccC--C-------CCccccCCCceEEEecccc------cC-
Confidence            99966555544   2331                   12211  0       1368999999977766642      11 


Q ss_pred             cccccCCcEEEEEEeeCCCCCeeeccceeEecC
Q 027522          165 PELKEKGSHMLQIDVNSEKGGMAINPNFFVDFE  197 (222)
Q Consensus       165 p~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~  197 (222)
                        . .....++-+|      .|+++..+.|||.
T Consensus       433 --~-~~~g~L~f~d------~~t~d~v~ki~i~  456 (641)
T KOG0772|consen  433 --G-MTAGTLFFFD------RMTLDTVYKIDIS  456 (641)
T ss_pred             --C-CCCceEEEEe------ccceeeEEEecCC
Confidence              1 1123566663      3567777778776

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.59  E-value=0.96  Score=41.29  Aligned_cols=127  Identities=17%  Similarity=0.157  Sum_probs=70.8

Q ss_pred             EEEcCCCCeEEEEeccCc-----eEEEEEeCC----CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEE
Q 027522            5 FLHDPSKDIGFVGCALAS-----TMVRFSKTQ----DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS   75 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELss-----tV~~~~~d~----~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvS   75 (222)
                      +++.|++...|+++--..     .++.+..+.    .+..+..+.+.+.-.  .|..+.....-+=.|++.+||.|+..+
T Consensus        25 l~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~G~~~~~~~~D~Egi~~~~~g~~~is~  102 (326)
T PF13449_consen   25 LDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDP--DGQPFPKNGLDPEGIAVPPDGSFWISS  102 (326)
T ss_pred             EEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCC--CCCcCCcCCCChhHeEEecCCCEEEEe
Confidence            567777778888876554     255554432    133444444444321  122111000012367888888888777


Q ss_pred             eCC-----CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEE
Q 027522           76 NWL-----HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLY  150 (222)
Q Consensus        76 nRg-----h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Ly  150 (222)
                      -+.     +-.|+.|+.+    +++...+.+-..+                .|......+.+...|..-|+++|||++||
T Consensus       103 E~~~~~~~~p~I~~~~~~----G~~~~~~~vP~~~----------------~~~~~~~~~~~~N~G~E~la~~~dG~~l~  162 (326)
T PF13449_consen  103 EGGRTGGIPPRIRRFDLD----GRVIRRFPVPAAF----------------LPDANGTSGRRNNRGFEGLAVSPDGRTLF  162 (326)
T ss_pred             CCccCCCCCCEEEEECCC----CcccceEcccccc----------------ccccCccccccCCCCeEEEEECCCCCEEE
Confidence            665     2578777542    5555544431111                11111114556667889999999999999


Q ss_pred             EEe
Q 027522          151 VTN  153 (222)
Q Consensus       151 vaN  153 (222)
                      ++.
T Consensus       163 ~~~  165 (326)
T PF13449_consen  163 AAM  165 (326)
T ss_pred             EEE
Confidence            998

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.41  E-value=0.39  Score=46.78  Aligned_cols=74  Identities=15%  Similarity=0.295  Sum_probs=44.7

Q ss_pred             eEEEcCCCCeEEEEecc-CceEEEEEeCCCCCeeEEEEEEecCcccc-cccCCCCCCceeEEEEcCC------CCEEEEE
Q 027522            4 RFLHDPSKDIGFVGCAL-ASTMVRFSKTQDGSWNHEVAISVKSLKVQ-NWILPEMPGLITDFLISLD------DRFLYFS   75 (222)
Q Consensus         4 r~afhP~g~~aYvv~EL-sstV~~~~~d~~g~~~~~q~is~~p~~~~-g~~~~~~~~~~adI~iSpD------grfLYvS   75 (222)
                      -++|-|+|+ +| +.|- ..+|.++..+ ++.  ...+..++..-.. +.      ...-+|+++||      .++||++
T Consensus        34 ~maflPDG~-ll-VtER~~G~I~~v~~~-~~~--~~~~~~l~~v~~~~ge------~GLlglal~PdF~~~~~n~~lYvs  102 (454)
T TIGR03606        34 ALLWGPDNQ-LW-VTERATGKILRVNPE-TGE--VKVVFTLPEIVNDAQH------NGLLGLALHPDFMQEKGNPYVYIS  102 (454)
T ss_pred             EEEEcCCCe-EE-EEEecCCEEEEEeCC-CCc--eeeeecCCceeccCCC------CceeeEEECCCccccCCCcEEEEE
Confidence            378999984 44 5666 6899988532 222  1222233211111 22      44589999988      4799998


Q ss_pred             eC---------CCCcEEEEEec
Q 027522           76 NW---------LHGDIRQYNIE   88 (222)
Q Consensus        76 nR---------gh~sI~vf~i~   88 (222)
                      .-         .+..|+.|..+
T Consensus       103 yt~~~~~~~~~~~~~I~R~~l~  124 (454)
T TIGR03606       103 YTYKNGDKELPNHTKIVRYTYD  124 (454)
T ss_pred             EeccCCCCCccCCcEEEEEEec
Confidence            51         25678888885

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PTZ00420 coronin; Provisional

Probab=95.35  E-value=0.93  Score=45.27  Aligned_cols=67  Identities=6%  Similarity=0.029  Sum_probs=47.9

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|||++..+.+..-.+.+|.+|... ++..  ...+..     .        .....|.+||||+.|.+++. .+.|++
T Consensus       131 Vaf~P~g~~iLaSgS~DgtIrIWDl~-tg~~--~~~i~~-----~--------~~V~SlswspdG~lLat~s~-D~~IrI  193 (568)
T PTZ00420        131 IDWNPMNYYIMCSSGFDSFVNIWDIE-NEKR--AFQINM-----P--------KKLSSLKWNIKGNLLSGTCV-GKHMHI  193 (568)
T ss_pred             EEECCCCCeEEEEEeCCCeEEEEECC-CCcE--EEEEec-----C--------CcEEEEEECCCCCEEEEEec-CCEEEE
Confidence            68999998877777778999988764 3321  112211     1        23578999999999987774 568999


Q ss_pred             EEec
Q 027522           85 YNIE   88 (222)
Q Consensus        85 f~i~   88 (222)
                      |++.
T Consensus       194 wD~R  197 (568)
T PTZ00420        194 IDPR  197 (568)
T ss_pred             EECC
Confidence            9884

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=95.31  E-value=0.19  Score=49.14  Aligned_cols=33  Identities=27%  Similarity=0.518  Sum_probs=28.8

Q ss_pred             CCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522           56 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        56 ~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d   89 (222)
                      +++..+++.+|.|+|.||+|| +.|.|++|++..
T Consensus       343 ieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~  375 (514)
T KOG2055|consen  343 IEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQ  375 (514)
T ss_pred             eccEEeeEEEecCCcEEEEEc-CCceEEEEecCC
Confidence            346789999999999999999 678999999954

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.24  E-value=0.42  Score=49.31  Aligned_cols=114  Identities=18%  Similarity=0.242  Sum_probs=70.7

Q ss_pred             EeEEEcCCCCeEEEEeccCceEEEEEe-CCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522            3 IRFLHDPSKDIGFVGCALASTMVRFSK-TQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD   81 (222)
Q Consensus         3 vr~afhP~g~~aYvv~ELsstV~~~~~-d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s   81 (222)
                      .++.|+|.|..++... -+.||-.|.. +..|+   ..++.+.             .-+.++.++|||+-|-|+. ..|.
T Consensus       482 s~l~f~~~~~~LaS~S-WDkTVRiW~if~s~~~---vEtl~i~-------------sdvl~vsfrPdG~elaVaT-ldgq  543 (893)
T KOG0291|consen  482 SGLSFSPDGSLLASGS-WDKTVRIWDIFSSSGT---VETLEIR-------------SDVLAVSFRPDGKELAVAT-LDGQ  543 (893)
T ss_pred             eeeEEccccCeEEecc-ccceEEEEEeeccCce---eeeEeec-------------cceeEEEEcCCCCeEEEEE-ecce
Confidence            3678899888776654 3667666643 22222   2233322             3357899999999999988 6789


Q ss_pred             EEEEEecCCCCCeEEEEEEe-----cceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           82 IRQYNIEDPKNPVLTGQIWV-----GGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~-----gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |..|++..   ...++.|..     +|...++            ..-.....+||.    =-.+.+|+||+.++++-
T Consensus       544 Itf~d~~~---~~q~~~IdgrkD~~~gR~~~D------------~~ta~~sa~~K~----Ftti~ySaDG~~IlAgG  601 (893)
T KOG0291|consen  544 ITFFDIKE---AVQVGSIDGRKDLSGGRKETD------------RITAENSAKGKT----FTTICYSADGKCILAGG  601 (893)
T ss_pred             EEEEEhhh---ceeeccccchhhccccccccc------------eeehhhcccCCc----eEEEEEcCCCCEEEecC
Confidence            99999854   334433332     1211110            000113345665    56789999999999886

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.21  E-value=0.88  Score=42.85  Aligned_cols=39  Identities=28%  Similarity=0.503  Sum_probs=33.5

Q ss_pred             eEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEec
Q 027522           61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVG  102 (222)
Q Consensus        61 adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~g  102 (222)
                      -+++||  |++-||++|..| +.+-||++|.+|+|+++..+|
T Consensus       175 ~~v~IS--Gn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g  213 (370)
T COG5276         175 HDVAIS--GNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTG  213 (370)
T ss_pred             eeEEEe--cCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecC
Confidence            367776  889999999765 777899999999999999886

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.21  E-value=0.19  Score=46.03  Aligned_cols=141  Identities=16%  Similarity=0.115  Sum_probs=80.0

Q ss_pred             CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEE
Q 027522           21 ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW  100 (222)
Q Consensus        21 sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~  100 (222)
                      ++......++  |.|+...+.+++++- .....   .+..-|=.++||||| |+-.-. +.-..|   .+-.+.|-. ..
T Consensus        78 G~kf~i~nwd--~~~~~a~v~~t~~ev-~~d~k---knR~NDgkvdP~Gry-y~GtMa-d~~~~l---e~~~g~Ly~-~~  145 (310)
T KOG4499|consen   78 GSKFVIVNWD--GVSESAKVYRTLFEV-QPDRK---KNRLNDGKVDPDGRY-YGGTMA-DFGDDL---EPIGGELYS-WL  145 (310)
T ss_pred             cceEEEEEcc--cccceeeeeeecccc-CchHH---hcccccCccCCCCce-eeeeec-cccccc---cccccEEEE-ec
Confidence            4455555663  566666666654321 11000   144568889999999 775432 111111   122233311 11


Q ss_pred             ecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEee
Q 027522          101 VGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       101 ~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd  180 (222)
                      .++      +|+++-                .-+|-|+-++.+.|-|..|+..               |.+-.|-.+|-|
T Consensus       146 ~~h------~v~~i~----------------~~v~IsNgl~Wd~d~K~fY~iD---------------sln~~V~a~dyd  188 (310)
T KOG4499|consen  146 AGH------QVELIW----------------NCVGISNGLAWDSDAKKFYYID---------------SLNYEVDAYDYD  188 (310)
T ss_pred             cCC------Cceeee----------------hhccCCccccccccCcEEEEEc---------------cCceEEeeeecC
Confidence            111      122221                1123388899999999999998               567888778878


Q ss_pred             CCCCCeeeccceeEecCCCCCCCcceeeeecCCCCc
Q 027522          181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDC  216 (222)
Q Consensus       181 ~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~gd~  216 (222)
                      -.||.+ .|.+...|..+     +.+.|--+|+|-|
T Consensus       189 ~~tG~~-snr~~i~dlrk-----~~~~e~~~PDGm~  218 (310)
T KOG4499|consen  189 CPTGDL-SNRKVIFDLRK-----SQPFESLEPDGMT  218 (310)
T ss_pred             CCcccc-cCcceeEEecc-----CCCcCCCCCCcce
Confidence            888876 57788888877     2444444555544

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.19  E-value=0.14  Score=47.96  Aligned_cols=44  Identities=27%  Similarity=0.627  Sum_probs=36.3

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecce
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGL  104 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~  104 (222)
                      +..+|+.+|-  .++|++-|- .-++++||++|++|+|.++..+-|.
T Consensus        87 ~l~~Dv~vse--~yvyvad~s-sGL~IvDIS~P~sP~~~~~lnt~gy  130 (370)
T COG5276          87 DLFADVRVSE--EYVYVADWS-SGLRIVDISTPDSPTLIGFLNTDGY  130 (370)
T ss_pred             hhhheeEecc--cEEEEEcCC-CceEEEeccCCCCcceeccccCCce
Confidence            6678999984  699999865 4599999999999999888887443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.06  E-value=0.48  Score=43.45  Aligned_cols=86  Identities=13%  Similarity=0.167  Sum_probs=58.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeC-CCCCeeEEEEE-EecC-cccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEVAI-SVKS-LKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD   81 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d-~~g~~~~~q~i-s~~p-~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s   81 (222)
                      ++++-+.+..|++.-|+-+|-.|.|+ +.|.+...+++ .+-. .+++       +-.+-.+.|.- .-+|||++|..+.
T Consensus       163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e-------~~~PDGm~ID~-eG~L~Va~~ng~~  234 (310)
T KOG4499|consen  163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE-------SLEPDGMTIDT-EGNLYVATFNGGT  234 (310)
T ss_pred             ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC-------CCCCCcceEcc-CCcEEEEEecCcE
Confidence            56778899999999999999999987 66766555544 3321 1111       12334455555 4589999998876


Q ss_pred             EEEEEecCCCCCeEEEEEEe
Q 027522           82 IRQYNIEDPKNPVLTGQIWV  101 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~  101 (222)
                      |..+   ||.++|+..++..
T Consensus       235 V~~~---dp~tGK~L~eikl  251 (310)
T KOG4499|consen  235 VQKV---DPTTGKILLEIKL  251 (310)
T ss_pred             EEEE---CCCCCcEEEEEEc
Confidence            6555   5677888666654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.02  E-value=0.63  Score=44.46  Aligned_cols=155  Identities=19%  Similarity=0.207  Sum_probs=80.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|||+|...-...|- +||.+.+--++|+.-    ...-    .|..    |..++-|.+|||+.||-+|. -.++|-+
T Consensus       179 lafs~~G~llATASeK-GTVIRVf~v~~G~kl----~eFR----RG~~----~~~IySL~Fs~ds~~L~~sS-~TeTVHi  244 (391)
T KOG2110|consen  179 LAFSPDGTLLATASEK-GTVIRVFSVPEGQKL----YEFR----RGTY----PVSIYSLSFSPDSQFLAASS-NTETVHI  244 (391)
T ss_pred             EEECCCCCEEEEeccC-ceEEEEEEcCCccEe----eeee----CCce----eeEEEEEEECCCCCeEEEec-CCCeEEE
Confidence            5677777777777763 444443332344211    0110    2221    26679999999999998776 4689999


Q ss_pred             EEecCCCCCeEE---EEEEecceeecC--C----ceeeeeCCCCCCCCCCccccCcccCCCC--eeEEEC--CCCCEEEE
Q 027522           85 YNIEDPKNPVLT---GQIWVGGLFRKG--S----PVVAVTDDGQPYQSDVPEVQGHRLRGGP--QMIQLS--LDGKRLYV  151 (222)
Q Consensus        85 f~i~d~~~~~L~---~~v~~gG~~~~~--~----~~~~~~~~~~~~~p~~~~v~G~~~~ggP--r~~~ls--pdGk~Lyv  151 (222)
                      |.++.....+.-   ......+.+.+.  +    .|.-.-+-+       +..-..++.+.+  +...|+  +.+.+++|
T Consensus       245 FKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~-------R~FAt~~l~~s~~~~~~~l~~~~~~~~v~v  317 (391)
T KOG2110|consen  245 FKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQS-------RKFATAKLPESGRKNICSLSSIQKIPRVLV  317 (391)
T ss_pred             EEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhc-------cceeEEEccCCCccceEEeeccCCCCEEEE
Confidence            999652211110   001111111110  0    011110111       112233444455  455666  48899999


Q ss_pred             EeCCCCccccccccccccCCcEEEEEEeeCCC-CCeeeccceeEec
Q 027522          152 TNSLFSAWDCQFYPELKEKGSHMLQIDVNSEK-GGMAINPNFFVDF  196 (222)
Q Consensus       152 aNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~-G~l~~~~~f~vdf  196 (222)
                      |.                .++++..+.+++++ |...+-+....++
T Consensus       318 as----------------~dG~~y~y~l~~~~gGec~lik~h~~~~  347 (391)
T KOG2110|consen  318 AS----------------YDGHLYSYRLPPKEGGECALIKRHFLDG  347 (391)
T ss_pred             EE----------------cCCeEEEEEcCCCCCceeEEEEeeccCC
Confidence            98                35677777778865 4455554444433

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.96  E-value=0.59  Score=45.65  Aligned_cols=133  Identities=14%  Similarity=0.150  Sum_probs=64.0

Q ss_pred             cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEc--CCCCEEEEEeCCCCcEEEEEecCCCCCeEE-
Q 027522           20 LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLIS--LDDRFLYFSNWLHGDIRQYNIEDPKNPVLT-   96 (222)
Q Consensus        20 LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iS--pDgrfLYvSnRgh~sI~vf~i~d~~~~~L~-   96 (222)
                      .++++.+|.+.   +-+.+|+|.++++.          ..+=+|+..  |+--+=||.+-...+|..|--++  .++.. 
T Consensus       220 yG~~l~vWD~~---~r~~~Q~idLg~~g----------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~--~g~W~a  284 (461)
T PF05694_consen  220 YGHSLHVWDWS---TRKLLQTIDLGEEG----------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD--DGEWAA  284 (461)
T ss_dssp             S--EEEEEETT---TTEEEEEEES-TTE----------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E--TTEEEE
T ss_pred             ccCeEEEEECC---CCcEeeEEecCCCC----------CceEEEEecCCCCccceEEEEeccceEEEEEEcC--CCCeee
Confidence            36788999885   34778999987532          234567665  45778889999999999887743  24332 


Q ss_pred             EEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEE
Q 027522           97 GQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQ  176 (222)
Q Consensus        97 ~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~  176 (222)
                      .+|-.   ++.   .+|    +-+..|+-..--|. +-+-+-++.||.|.|||||+|     |          -.+-|.+
T Consensus       285 ~kVi~---ip~---~~v----~~~~lp~ml~~~~~-~P~LitDI~iSlDDrfLYvs~-----W----------~~Gdvrq  338 (461)
T PF05694_consen  285 EKVID---IPA---KKV----EGWILPEMLKPFGA-VPPLITDILISLDDRFLYVSN-----W----------LHGDVRQ  338 (461)
T ss_dssp             EEEEE---E-----EE------SS---GGGGGG-E-E------EEE-TTS-EEEEEE-----T----------TTTEEEE
T ss_pred             eEEEE---CCC---ccc----Cccccccccccccc-CCCceEeEEEccCCCEEEEEc-----c----------cCCcEEE
Confidence            11111   100   001    11222221000000 123378999999999999999     2          3556788


Q ss_pred             EEeeCCCCCeeeccceeE
Q 027522          177 IDVNSEKGGMAINPNFFV  194 (222)
Q Consensus       177 ~dvd~~~G~l~~~~~f~v  194 (222)
                      +|| ++.-.-++..+..+
T Consensus       339 YDI-SDP~~Pkl~gqv~l  355 (461)
T PF05694_consen  339 YDI-SDPFNPKLVGQVFL  355 (461)
T ss_dssp             EE--SSTTS-EEEEEEE-
T ss_pred             Eec-CCCCCCcEEeEEEE
Confidence            998 45556666665544

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.90  E-value=0.29  Score=50.42  Aligned_cols=105  Identities=23%  Similarity=0.268  Sum_probs=62.0

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeC----CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKT----QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d----~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      ++-.|+++..-.+.+ +.||-.|...    ..|+-  .+++++.....     =+.+..+-.+.+|||||||-||- ..+
T Consensus       460 i~~~pD~~g~vT~sa-DktVkfWdf~l~~~~~gt~--~k~lsl~~~rt-----Lel~ddvL~v~~Spdgk~LaVsL-Ldn  530 (888)
T KOG0306|consen  460 ISLSPDNKGFVTGSA-DKTVKFWDFKLVVSVPGTQ--KKVLSLKHTRT-----LELEDDVLCVSVSPDGKLLAVSL-LDN  530 (888)
T ss_pred             eeecCCCCceEEecC-CcEEEEEeEEEEeccCccc--ceeeeeccceE-----EeccccEEEEEEcCCCcEEEEEe-ccC
Confidence            345677776555544 6666555331    12321  12233221100     01224568899999999999997 688


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC-eeEEECCCCCEEEEEeC
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP-QMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP-r~~~lspdGk~LyvaNs  154 (222)
                      ++-+|-++.   .++  .++.=                           |..   -| +.|.||||++ |+||.|
T Consensus       531 TVkVyflDt---lKF--flsLY---------------------------GHk---LPV~smDIS~DSk-livTgS  569 (888)
T KOG0306|consen  531 TVKVYFLDT---LKF--FLSLY---------------------------GHK---LPVLSMDISPDSK-LIVTGS  569 (888)
T ss_pred             eEEEEEecc---eee--eeeec---------------------------ccc---cceeEEeccCCcC-eEEecc
Confidence            999999954   444  12331                           222   14 8999999999 556654

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=94.89  E-value=0.052  Score=41.45  Aligned_cols=32  Identities=25%  Similarity=0.438  Sum_probs=28.4

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d   89 (222)
                      ..+-.|.+|||+|+||||.-...+|.+|++.+
T Consensus        54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            34578999999999999999999999999853

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.62  E-value=0.4  Score=46.04  Aligned_cols=67  Identities=19%  Similarity=0.217  Sum_probs=38.9

Q ss_pred             EEEcCCC-CeEEEEeccCce--EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522            5 FLHDPSK-DIGFVGCALAST--MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD   81 (222)
Q Consensus         5 ~afhP~g-~~aYvv~ELsst--V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s   81 (222)
                      -.+.|++ +.+|+.-|...+  +++...+ .|.-  .++.+     +.        ....+...|||||+|-.|-=..++
T Consensus       198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~-~g~~--~~i~~-----~~--------g~~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         198 PAWSPDGKKLAYVSFELGGCPRIYYLDLN-TGKR--PVILN-----FN--------GNNGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             cccCcCCCceEEEEEecCCCceEEEEecc-CCcc--ceeec-----cC--------CccCCccCCCCCCEEEEEECCCCC
Confidence            3566664 567777666663  5555443 2211  22222     22        223677899999998766555577


Q ss_pred             EEEEEe
Q 027522           82 IRQYNI   87 (222)
Q Consensus        82 I~vf~i   87 (222)
                      ..+|-+
T Consensus       262 ~~iy~~  267 (425)
T COG0823         262 PDIYLM  267 (425)
T ss_pred             ccEEEE
Confidence            666666

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.57  E-value=0.56  Score=43.32  Aligned_cols=63  Identities=11%  Similarity=0.125  Sum_probs=36.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeC-CCCCee-EEEE-EEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKT-QDGSWN-HEVA-ISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW   77 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d-~~g~~~-~~q~-is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR   77 (222)
                      ++++++|  +||.++  ..|++|... .+|.-. ..++ ++-.+..-. .    ....+..+.+.||| +||+|.-
T Consensus        77 i~~~~~G--lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~-~----~~~~~~~l~~gpDG-~LYv~~G  142 (367)
T TIGR02604        77 LAVAVGG--VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQIN-N----HHHSLNSLAWGPDG-WLYFNHG  142 (367)
T ss_pred             eeEecCC--EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCC-c----ccccccCceECCCC-CEEEecc
Confidence            5678888  898763  568888653 344333 2222 232222100 0    01335789999999 5998764

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=94.55  E-value=0.18  Score=48.99  Aligned_cols=66  Identities=21%  Similarity=0.372  Sum_probs=44.2

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCC--CCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQD--GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~--g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      .++.|||.. +|..--+.++..+..|++  +.|+-..+                 ....|++|++||++||..+ -+-.|
T Consensus       318 c~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr~-----------------~~v~dlait~Dgk~vl~v~-~d~~i  378 (519)
T KOG0293|consen  318 CAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVRD-----------------PKVHDLAITYDGKYVLLVT-VDKKI  378 (519)
T ss_pred             eEEccCCce-eEecCCCCcEEEecCCcchhhccccccc-----------------ceeEEEEEcCCCcEEEEEe-cccce
Confidence            356677776 455445666777765432  44432221                 2358999999999999888 57789


Q ss_pred             EEEEecC
Q 027522           83 RQYNIED   89 (222)
Q Consensus        83 ~vf~i~d   89 (222)
                      +.|...+
T Consensus       379 ~l~~~e~  385 (519)
T KOG0293|consen  379 RLYNREA  385 (519)
T ss_pred             eeechhh
Confidence            9998754

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.46  E-value=0.41  Score=44.52  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=63.2

Q ss_pred             CCCceeEEEEcC-CCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccC
Q 027522           56 MPGLITDFLISL-DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR  134 (222)
Q Consensus        56 ~~~~~adI~iSp-DgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~  134 (222)
                      +|..+-++.++| +++.+.++.|=-.-..+||..   ++++...++..                          .|++++
T Consensus         3 lP~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~---~g~~~~~~~a~--------------------------~gRHFy   53 (305)
T PF07433_consen    3 LPARGHGVAAHPTRPEAVAFARRPGTFALVFDCR---TGQLLQRLWAP--------------------------PGRHFY   53 (305)
T ss_pred             CCccccceeeCCCCCeEEEEEeCCCcEEEEEEcC---CCceeeEEcCC--------------------------CCCEEe
Confidence            457778999999 666676777655566777663   35554444431                          266666


Q ss_pred             CCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeec
Q 027522          135 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRY  211 (222)
Q Consensus       135 ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~  211 (222)
                      |.   =.+|+||++||++=+       .+ .   +.-..|-.+|+.   .++....    +|..-.-|   ||||++
T Consensus        54 GH---g~fs~dG~~LytTEn-------d~-~---~g~G~IgVyd~~---~~~~ri~----E~~s~GIG---PHel~l  106 (305)
T PF07433_consen   54 GH---GVFSPDGRLLYTTEN-------DY-E---TGRGVIGVYDAA---RGYRRIG----EFPSHGIG---PHELLL  106 (305)
T ss_pred             cC---EEEcCCCCEEEEecc-------cc-C---CCcEEEEEEECc---CCcEEEe----EecCCCcC---hhhEEE
Confidence            63   489999999999952       22 1   223555557663   3443322    34444445   788876

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=94.41  E-value=0.86  Score=45.28  Aligned_cols=61  Identities=15%  Similarity=0.061  Sum_probs=46.3

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP  137 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP  137 (222)
                      +.+-++.+|+|||++-|+|- ..+|++++|+ .++.+++.+-.-|                                 .=
T Consensus       402 g~I~av~vs~dGK~~vvaNd-r~el~vidid-ngnv~~idkS~~~---------------------------------lI  446 (668)
T COG4946         402 GNIEAVKVSPDGKKVVVAND-RFELWVIDID-NGNVRLIDKSEYG---------------------------------LI  446 (668)
T ss_pred             cceEEEEEcCCCcEEEEEcC-ceEEEEEEec-CCCeeEecccccc---------------------------------ee
Confidence            44678999999999999994 4689999994 5788886553321                                 13


Q ss_pred             eeEEECCCCCEEEEEe
Q 027522          138 QMIQLSLDGKRLYVTN  153 (222)
Q Consensus       138 r~~~lspdGk~LyvaN  153 (222)
                      -.|+++|+++|+--|=
T Consensus       447 tdf~~~~nsr~iAYaf  462 (668)
T COG4946         447 TDFDWHPNSRWIAYAF  462 (668)
T ss_pred             EEEEEcCCceeEEEec
Confidence            4789999999986663

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=94.30  E-value=0.16  Score=48.10  Aligned_cols=85  Identities=18%  Similarity=0.156  Sum_probs=56.8

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP  137 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP  137 (222)
                      ...+++.+|.|||.| +++-++++|++|++.| ...+-+..+..                         .+.=.+    |
T Consensus        87 ~~vt~~~FsSdGK~l-at~~~Dr~Ir~w~~~D-F~~~eHr~~R~-------------------------nve~dh----p  135 (420)
T KOG2096|consen   87 KEVTDVAFSSDGKKL-ATISGDRSIRLWDVRD-FENKEHRCIRQ-------------------------NVEYDH----P  135 (420)
T ss_pred             CceeeeEEcCCCcee-EEEeCCceEEEEecch-hhhhhhhHhhc-------------------------cccCCC----c
Confidence            447999999999999 5556899999999966 43333211111                         011124    8


Q ss_pred             eeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCee
Q 027522          138 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       138 r~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                      -.+.++||-+-+.|+.        ..     .+..-|++.+-.++ |+++
T Consensus       136 T~V~FapDc~s~vv~~--------~~-----g~~l~vyk~~K~~d-G~~~  171 (420)
T KOG2096|consen  136 TRVVFAPDCKSVVVSV--------KR-----GNKLCVYKLVKKTD-GSGS  171 (420)
T ss_pred             eEEEECCCcceEEEEE--------cc-----CCEEEEEEeeeccc-CCCC
Confidence            8999999999999987        22     34556666655433 6553

>PTZ00421 coronin; Provisional

Probab=94.15  E-value=1.4  Score=42.93  Aligned_cols=69  Identities=14%  Similarity=0.119  Sum_probs=46.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|||++....+..-.+.+|.+|... +++  ....+..       .     ......|.+||||+.|..+++ ++.|++
T Consensus       131 l~f~P~~~~iLaSgs~DgtVrIWDl~-tg~--~~~~l~~-------h-----~~~V~sla~spdG~lLatgs~-Dg~IrI  194 (493)
T PTZ00421        131 VSFHPSAMNVLASAGADMVVNVWDVE-RGK--AVEVIKC-------H-----SDQITSLEWNLDGSLLCTTSK-DKKLNI  194 (493)
T ss_pred             EEeCcCCCCEEEEEeCCCEEEEEECC-CCe--EEEEEcC-------C-----CCceEEEEEECCCCEEEEecC-CCEEEE
Confidence            67999876555555568899988764 332  1222211       1     134688999999999987764 778999


Q ss_pred             EEecC
Q 027522           85 YNIED   89 (222)
Q Consensus        85 f~i~d   89 (222)
                      ||+..
T Consensus       195 wD~rs  199 (493)
T PTZ00421        195 IDPRD  199 (493)
T ss_pred             EECCC
Confidence            98843

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=94.14  E-value=0.3  Score=45.04  Aligned_cols=98  Identities=14%  Similarity=0.169  Sum_probs=57.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      +.+|-++...|+.|-| ++|-.+.|.   .++..+.|..-|            +.+--|.++||||++-+-. .+-.+..
T Consensus       153 ~~w~~~nd~Fflt~Gl-G~v~ILsyp---sLkpv~si~AH~------------snCicI~f~p~GryfA~Gs-ADAlvSL  215 (313)
T KOG1407|consen  153 ISWNNSNDLFFLTNGL-GCVEILSYP---SLKPVQSIKAHP------------SNCICIEFDPDGRYFATGS-ADALVSL  215 (313)
T ss_pred             eeecCCCCEEEEecCC-ceEEEEecc---ccccccccccCC------------cceEEEEECCCCceEeecc-ccceeec
Confidence            4555444444444443 456666653   344444443322            5578999999999996543 4566888


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ||+++     |+    +.--|+|                      =.+   .-|.+.+|-|||+|--|.
T Consensus       216 WD~~E-----Li----C~R~isR----------------------ldw---pVRTlSFS~dg~~lASaS  250 (313)
T KOG1407|consen  216 WDVDE-----LI----CERCISR----------------------LDW---PVRTLSFSHDGRMLASAS  250 (313)
T ss_pred             cChhH-----hh----hheeecc----------------------ccC---ceEEEEeccCcceeeccC
Confidence            98854     21    0000111                      012   149999999999887765

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.85  E-value=0.6  Score=42.76  Aligned_cols=133  Identities=17%  Similarity=0.177  Sum_probs=66.5

Q ss_pred             EeEEEcCC---CCeEEEEecc--------CceEEEEEeCCC-CCeeEEEEE-EecCcccccccCCCCCCceeEEEEcCCC
Q 027522            3 IRFLHDPS---KDIGFVGCAL--------ASTMVRFSKTQD-GSWNHEVAI-SVKSLKVQNWILPEMPGLITDFLISLDD   69 (222)
Q Consensus         3 vr~afhP~---g~~aYvv~EL--------sstV~~~~~d~~-g~~~~~q~i-s~~p~~~~g~~~~~~~~~~adI~iSpDg   69 (222)
                      .-++|||+   ..++||.---        .+.|.++.++.+ ..+...+++ ...|....+.      -....|.+.|||
T Consensus        52 lgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~------H~g~~l~fgpDG  125 (331)
T PF07995_consen   52 LGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGN------HNGGGLAFGPDG  125 (331)
T ss_dssp             EEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSS------S-EEEEEE-TTS
T ss_pred             ccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCC------CCCccccCCCCC
Confidence            45799994   6788887652        357888887532 355555544 3333311111      234679999999


Q ss_pred             CEEEEEeCCCCc--EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCC
Q 027522           70 RFLYFSNWLHGD--IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGK  147 (222)
Q Consensus        70 rfLYvSnRgh~s--I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk  147 (222)
                       .||+|.=....  .++ ++ ....++. =++..-|.++.+.|..  .  .....++. ...|-+   -|.-|+++|.-.
T Consensus       126 -~LYvs~G~~~~~~~~~-~~-~~~~G~i-lri~~dG~~p~dnP~~--~--~~~~~~~i-~A~GlR---N~~~~~~d~~tg  193 (331)
T PF07995_consen  126 -KLYVSVGDGGNDDNAQ-DP-NSLRGKI-LRIDPDGSIPADNPFV--G--DDGADSEI-YAYGLR---NPFGLAFDPNTG  193 (331)
T ss_dssp             -EEEEEEB-TTTGGGGC-ST-TSSTTEE-EEEETTSSB-TTSTTT--T--STTSTTTE-EEE--S---EEEEEEEETTTT
T ss_pred             -cEEEEeCCCCCccccc-cc-ccccceE-EEecccCcCCCCCccc--c--CCCceEEE-EEeCCC---ccccEEEECCCC
Confidence             99999743333  111 11 0123333 2444555544432110  0  00111121 223444   488999999955


Q ss_pred             EEEEEe
Q 027522          148 RLYVTN  153 (222)
Q Consensus       148 ~LyvaN  153 (222)
                      .||+++
T Consensus       194 ~l~~~d  199 (331)
T PF07995_consen  194 RLWAAD  199 (331)
T ss_dssp             EEEEEE
T ss_pred             cEEEEc
Confidence            688886

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=93.83  E-value=0.26  Score=49.06  Aligned_cols=72  Identities=15%  Similarity=0.213  Sum_probs=54.2

Q ss_pred             EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522            6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY   85 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf   85 (222)
                      .|||..+--|+.|..++|+-.|.-+  ......|||-..++.  |..     -.++-+..++||+.+-+.| +.|+|..|
T Consensus       275 ~whP~~k~~FlT~s~DgtlRiWdv~--~~k~q~qVik~k~~~--g~R-----v~~tsC~~nrdg~~iAagc-~DGSIQ~W  344 (641)
T KOG0772|consen  275 CWHPDNKEEFLTCSYDGTLRIWDVN--NTKSQLQVIKTKPAG--GKR-----VPVTSCAWNRDGKLIAAGC-LDGSIQIW  344 (641)
T ss_pred             ccccCcccceEEecCCCcEEEEecC--CchhheeEEeeccCC--Ccc-----cCceeeecCCCcchhhhcc-cCCceeee
Confidence            4899999999999999999888764  234556777554432  321     2358899999999955544 89999999


Q ss_pred             Ee
Q 027522           86 NI   87 (222)
Q Consensus        86 ~i   87 (222)
                      +.
T Consensus       345 ~~  346 (641)
T KOG0772|consen  345 DK  346 (641)
T ss_pred             ec
Confidence            76

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=93.72  E-value=0.91  Score=45.25  Aligned_cols=95  Identities=11%  Similarity=0.188  Sum_probs=64.3

Q ss_pred             EEEcCCCCe-EEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC--CCc
Q 027522            5 FLHDPSKDI-GFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL--HGD   81 (222)
Q Consensus         5 ~afhP~g~~-aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg--h~s   81 (222)
                      +.++|+++. +-|-.=+-++|+.|..+.+      -+..+++.+ .           -++..||-|+.|-++..|  .|+
T Consensus       276 v~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~df~egp-R-----------N~~~fnp~g~ii~lAGFGNL~G~  337 (566)
T KOG2315|consen  276 VTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVFDFPEGP-R-----------NTAFFNPHGNIILLAGFGNLPGD  337 (566)
T ss_pred             EEECCCCCEEEEEEecccceEEEEcCCCC------EeEeCCCCC-c-----------cceEECCCCCEEEEeecCCCCCc
Confidence            356777643 3333447777777765321      233444322 1           368899999999999996  699


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |.+||+.+   -++++++..-+                                 ---|..+|||+|++.|.
T Consensus       338 mEvwDv~n---~K~i~~~~a~~---------------------------------tt~~eW~PdGe~flTAT  373 (566)
T KOG2315|consen  338 MEVWDVPN---RKLIAKFKAAN---------------------------------TTVFEWSPDGEYFLTAT  373 (566)
T ss_pred             eEEEeccc---hhhccccccCC---------------------------------ceEEEEcCCCcEEEEEe
Confidence            99999954   56666555421                                 23689999999999886

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=93.69  E-value=1.2  Score=44.03  Aligned_cols=81  Identities=17%  Similarity=0.251  Sum_probs=54.9

Q ss_pred             CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC------------
Q 027522           10 SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW------------   77 (222)
Q Consensus        10 ~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR------------   77 (222)
                      ||+++|+++  ++.|.++.-....+.+....|.+...             +.+|-| .++|.+-+++.            
T Consensus        21 DG~yIY~v~--~~~l~Iida~p~~~~~~~s~I~~~~~-------------~~eLyl-~gdrLvVi~~~~~~~~~~~~~~~   84 (521)
T PF09826_consen   21 DGEYIYVVS--GGRLYIIDAYPAEEMKVVSRIDLDGS-------------PQELYL-DGDRLVVIGSSYEYYPREPDIDS   84 (521)
T ss_pred             CCCEEEEEe--CCEEEEEECCCchhceEEEEEecCCC-------------hhheEE-cCCEEEEEEeccccccccccccc
Confidence            799999999  68888886532345666666655421             355666 23344433322            


Q ss_pred             -----------CCCcEEEEEecCCCCCeEEEEEEecceee
Q 027522           78 -----------LHGDIRQYNIEDPKNPVLTGQIWVGGLFR  106 (222)
Q Consensus        78 -----------gh~sI~vf~i~d~~~~~L~~~v~~gG~~~  106 (222)
                                 ..-.|.+|||+|+.+|++++++..-|.+-
T Consensus        85 ~~~~~~~~~~~~~t~i~vYDIsD~~~P~~~~~~~~~G~yv  124 (521)
T PF09826_consen   85 ESGDTPYYYYKSSTKITVYDISDPSNPKLLREIEIEGSYV  124 (521)
T ss_pred             cccccccccCCceeEEEEEECCCCCCceEEEEEEeeeEEE
Confidence                       23468999999999999999999877653

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.48  E-value=0.42  Score=29.81  Aligned_cols=32  Identities=16%  Similarity=0.113  Sum_probs=24.5

Q ss_pred             CCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEe
Q 027522            9 PSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISV   43 (222)
Q Consensus         9 P~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~   43 (222)
                      |+++++||.|+-+++|.++...   +.+....+.+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~---~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTA---TNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECC---CCeEEEEEEC
Confidence            7899999999999999998652   3444555554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.48  E-value=1.3  Score=42.62  Aligned_cols=100  Identities=15%  Similarity=0.062  Sum_probs=56.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEE-EEeCC-CCcE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLY-FSNWL-HGDI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLY-vSnRg-h~sI   82 (222)
                      ..|+|+|+.+-...+=+...-.|-++.+++-  ...++-.    .        +....=.+||||+++| +|.|+ +=.|
T Consensus       243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~----~--------gi~~~Ps~spdG~~ivf~Sdr~G~p~I  308 (425)
T COG0823         243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN--LPRLTNG----F--------GINTSPSWSPDGSKIVFTSDRGGRPQI  308 (425)
T ss_pred             ccCCCCCCEEEEEECCCCCccEEEEcCCCCc--ceecccC----C--------ccccCccCCCCCCEEEEEeCCCCCcce
Confidence            4689999888887776666555555533322  1111111    1        1123456899999987 66663 3444


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .+++.+  + . -+.++...+                           ..    ...=..||||+++...+
T Consensus       309 ~~~~~~--g-~-~~~riT~~~---------------------------~~----~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         309 YLYDLE--G-S-QVTRLTFSG---------------------------GG----NSNPVWSPDGDKIVFES  344 (425)
T ss_pred             EEECCC--C-C-ceeEeeccC---------------------------CC----CcCccCCCCCCEEEEEe
Confidence            444442  1 1 123333321                           11    22457899999999998

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.36  E-value=2  Score=39.17  Aligned_cols=68  Identities=18%  Similarity=0.159  Sum_probs=38.0

Q ss_pred             CeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCC
Q 027522           12 DIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK   91 (222)
Q Consensus        12 ~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~   91 (222)
                      ..+|.+.=-+.+.++|..   .+++....++.+.   +||      +++      .||+.||+|+ |.+.|..+   ||.
T Consensus       100 d~l~qLTWk~~~~f~yd~---~tl~~~~~~~y~~---EGW------GLt------~dg~~Li~SD-GS~~L~~~---dP~  157 (264)
T PF05096_consen  100 DKLYQLTWKEGTGFVYDP---NTLKKIGTFPYPG---EGW------GLT------SDGKRLIMSD-GSSRLYFL---DPE  157 (264)
T ss_dssp             TEEEEEESSSSEEEEEET---TTTEEEEEEE-SS---S--------EEE------ECSSCEEEE--SSSEEEEE----TT
T ss_pred             CEEEEEEecCCeEEEEcc---ccceEEEEEecCC---cce------EEE------cCCCEEEEEC-CccceEEE---CCc
Confidence            344444444455555543   2577777776653   677      222      8999999998 46666555   566


Q ss_pred             CCeEEEEEEe
Q 027522           92 NPVLTGQIWV  101 (222)
Q Consensus        92 ~~~L~~~v~~  101 (222)
                      +-+.+++|.+
T Consensus       158 ~f~~~~~i~V  167 (264)
T PF05096_consen  158 TFKEVRTIQV  167 (264)
T ss_dssp             T-SEEEEEE-
T ss_pred             ccceEEEEEE
Confidence            6777777766

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.34  E-value=1.5  Score=42.28  Aligned_cols=31  Identities=23%  Similarity=0.454  Sum_probs=26.7

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d   89 (222)
                      +.++.+.+|+|||||-+..- .|+|++|+...
T Consensus       282 ~siSsl~VS~dGkf~AlGT~-dGsVai~~~~~  312 (398)
T KOG0771|consen  282 KSISSLAVSDDGKFLALGTM-DGSVAIYDAKS  312 (398)
T ss_pred             CcceeEEEcCCCcEEEEecc-CCcEEEEEece
Confidence            46799999999999998875 99999998743

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=93.27  E-value=0.24  Score=38.05  Aligned_cols=18  Identities=28%  Similarity=0.259  Sum_probs=15.7

Q ss_pred             CCeeEEECCCCCEEEEEe
Q 027522          136 GPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus       136 gPr~~~lspdGk~LyvaN  153 (222)
                      .|+-++||+||.+|+||=
T Consensus        58 fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   58 FPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             SEEEEEE-TTSSEEEEEE
T ss_pred             ccCeEEEcCCCCEEEEEe
Confidence            399999999999999996

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=93.17  E-value=2.5  Score=42.25  Aligned_cols=61  Identities=16%  Similarity=0.181  Sum_probs=43.2

Q ss_pred             eeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCee
Q 027522           60 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM  139 (222)
Q Consensus        60 ~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~  139 (222)
                      ++.+++|||+.++-|-.- ++.|.+|.+...   .|......                             ...+|-+-.
T Consensus       446 ~s~vAv~~~~~~vaVGG~-Dgkvhvysl~g~---~l~ee~~~-----------------------------~~h~a~iT~  492 (603)
T KOG0318|consen  446 SSAVAVSPDGSEVAVGGQ-DGKVHVYSLSGD---ELKEEAKL-----------------------------LEHRAAITD  492 (603)
T ss_pred             cceEEEcCCCCEEEEecc-cceEEEEEecCC---cccceeee-----------------------------ecccCCceE
Confidence            488999999999988763 566999999652   22111111                             112334789


Q ss_pred             EEECCCCCEEEEEe
Q 027522          140 IQLSLDGKRLYVTN  153 (222)
Q Consensus       140 ~~lspdGk~LyvaN  153 (222)
                      +++||||++|.++.
T Consensus       493 vaySpd~~yla~~D  506 (603)
T KOG0318|consen  493 VAYSPDGAYLAAGD  506 (603)
T ss_pred             EEECCCCcEEEEec
Confidence            99999999999887

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=93.02  E-value=1.4  Score=46.29  Aligned_cols=115  Identities=13%  Similarity=0.139  Sum_probs=67.7

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC-CCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD-DRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD-grfLYvSnRgh~sI~   83 (222)
                      +-|||+++++-|.. -+++|.+|..+ ++.+  ..+++-.++..+ ...   ...+.-.+-||+ |.||.++.  .++|.
T Consensus       144 l~~~p~~~fLAvss-~dG~v~iw~~~-~~~~--~~tl~~v~k~n~-~~~---s~i~~~~aW~Pk~g~la~~~~--d~~Vk  213 (933)
T KOG1274|consen  144 LSYDPKGNFLAVSS-CDGKVQIWDLQ-DGIL--SKTLTGVDKDNE-FIL---SRICTRLAWHPKGGTLAVPPV--DNTVK  213 (933)
T ss_pred             eeEcCCCCEEEEEe-cCceEEEEEcc-cchh--hhhcccCCcccc-ccc---cceeeeeeecCCCCeEEeecc--CCeEE
Confidence            56899999887765 47888888764 3332  223322222222 111   144678889999 66666665  57899


Q ss_pred             EEEecCC-CCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE--eCCCCccc
Q 027522           84 QYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT--NSLFSAWD  160 (222)
Q Consensus        84 vf~i~d~-~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva--Nsl~~~wd  160 (222)
                      +|+..+= ...+|.                                 ++.+...=-.+++||.|+||-+.  |....-||
T Consensus       214 vy~r~~we~~f~Lr---------------------------------~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  214 VYSRKGWELQFKLR---------------------------------DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN  260 (933)
T ss_pred             EEccCCceeheeec---------------------------------ccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence            9988541 111221                                 11222223478999999999766  33444455


Q ss_pred             cc
Q 027522          161 CQ  162 (222)
Q Consensus       161 ~Q  162 (222)
                      -|
T Consensus       261 v~  262 (933)
T KOG1274|consen  261 VD  262 (933)
T ss_pred             cc
Confidence            55

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=92.99  E-value=0.98  Score=44.36  Aligned_cols=68  Identities=13%  Similarity=0.068  Sum_probs=46.0

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      |+|+-+++.+++.|+-+ .|++|.....   ..+....     .+|.      -..+.|.+|++|+|| ++.--.|-|-+
T Consensus       350 ~~fsSdsk~l~~~~~~G-eV~v~nl~~~---~~~~rf~-----D~G~------v~gts~~~S~ng~yl-A~GS~~GiVNI  413 (514)
T KOG2055|consen  350 FTFSSDSKELLASGGTG-EVYVWNLRQN---SCLHRFV-----DDGS------VHGTSLCISLNGSYL-ATGSDSGIVNI  413 (514)
T ss_pred             EEEecCCcEEEEEcCCc-eEEEEecCCc---ceEEEEe-----ecCc------cceeeeeecCCCceE-EeccCcceEEE
Confidence            78999999999999954 9999977532   1111111     0222      235899999999955 45445677888


Q ss_pred             EEec
Q 027522           85 YNIE   88 (222)
Q Consensus        85 f~i~   88 (222)
                      |+-.
T Consensus       414 Yd~~  417 (514)
T KOG2055|consen  414 YDGN  417 (514)
T ss_pred             eccc
Confidence            8853

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=92.96  E-value=3.2  Score=39.72  Aligned_cols=118  Identities=11%  Similarity=0.091  Sum_probs=67.8

Q ss_pred             EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522            6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY   85 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf   85 (222)
                      .|.++|.++-.. --+.||-+|+....   +-.++...++.++         +..+-|.+-.+-....|||| .++|.+.
T Consensus       355 ~ft~dG~~iisa-SsDgtvkvW~~Ktt---eC~~Tfk~~~~d~---------~vnsv~~~PKnpeh~iVCNr-sntv~im  420 (508)
T KOG0275|consen  355 TFTDDGHHIISA-SSDGTVKVWHGKTT---ECLSTFKPLGTDY---------PVNSVILLPKNPEHFIVCNR-SNTVYIM  420 (508)
T ss_pred             EEcCCCCeEEEe-cCCccEEEecCcch---hhhhhccCCCCcc---------cceeEEEcCCCCceEEEEcC-CCeEEEE
Confidence            578888876443 34677888764211   1112222222111         12244555556667779998 5677777


Q ss_pred             EecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccccc
Q 027522           86 NIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYP  165 (222)
Q Consensus        86 ~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp  165 (222)
                      .++    +..+...+.                            |++--|.==+-+|||.|.|+|+.-        +   
T Consensus       421 n~q----GQvVrsfsS----------------------------GkREgGdFi~~~lSpkGewiYcig--------E---  457 (508)
T KOG0275|consen  421 NMQ----GQVVRSFSS----------------------------GKREGGDFINAILSPKGEWIYCIG--------E---  457 (508)
T ss_pred             ecc----ceEEeeecc----------------------------CCccCCceEEEEecCCCcEEEEEc--------c---
Confidence            663    445444444                            222111134568999999999997        3   


Q ss_pred             ccccCCcEEEEEEeeCCCCCee
Q 027522          166 ELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       166 ~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                           ...++-+.+  .+|+|+
T Consensus       458 -----D~vlYCF~~--~sG~LE  472 (508)
T KOG0275|consen  458 -----DGVLYCFSV--LSGKLE  472 (508)
T ss_pred             -----CcEEEEEEe--ecCcee
Confidence                 456777755  789884

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=92.83  E-value=0.33  Score=46.88  Aligned_cols=73  Identities=16%  Similarity=0.262  Sum_probs=51.3

Q ss_pred             eEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeE
Q 027522           61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI  140 (222)
Q Consensus        61 adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~  140 (222)
                      --..+||||+.| ||.-|+.+++.||++ ..+|..    .+                           +|..  -+-..+
T Consensus       119 l~~~fsp~g~~l-~tGsGD~TvR~WD~~-TeTp~~----t~---------------------------KgH~--~WVlcv  163 (480)
T KOG0271|consen  119 LSVQFSPTGSRL-VTGSGDTTVRLWDLD-TETPLF----TC---------------------------KGHK--NWVLCV  163 (480)
T ss_pred             EEEEecCCCceE-EecCCCceEEeeccC-CCCcce----ee---------------------------cCCc--cEEEEE
Confidence            456799999999 888899999999994 455544    11                           1221  136788


Q ss_pred             EECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522          141 QLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       141 ~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l  186 (222)
                      +.||||++|.-..                .+.+|...  ||.+|+.
T Consensus       164 awsPDgk~iASG~----------------~dg~I~lw--dpktg~~  191 (480)
T KOG0271|consen  164 AWSPDGKKIASGS----------------KDGSIRLW--DPKTGQQ  191 (480)
T ss_pred             EECCCcchhhccc----------------cCCeEEEe--cCCCCCc
Confidence            9999999986654                34555555  6677764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=92.75  E-value=0.72  Score=48.58  Aligned_cols=105  Identities=11%  Similarity=0.114  Sum_probs=65.9

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      +.++|++.+ .|.++++++|.+|.-.   +|...+++.--.            ...-.+.+.|=|||+ +|--.+.+|.+
T Consensus       135 v~Wsp~~~~-lvS~s~DnsViiwn~~---tF~~~~vl~~H~------------s~VKGvs~DP~Gky~-ASqsdDrtikv  197 (942)
T KOG0973|consen  135 VNWSPDDSL-LVSVSLDNSVIIWNAK---TFELLKVLRGHQ------------SLVKGVSWDPIGKYF-ASQSDDRTLKV  197 (942)
T ss_pred             eccCCCccE-EEEecccceEEEEccc---cceeeeeeeccc------------ccccceEECCccCee-eeecCCceEEE
Confidence            467886654 6788999999999642   344444432211            234567899999998 66667889999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                      |++.+=+   +.-.|.-                     |........+    =|-+..||||++|-++||
T Consensus       198 wrt~dw~---i~k~It~---------------------pf~~~~~~T~----f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  198 WRTSDWG---IEKSITK---------------------PFEESPLTTF----FLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             EEcccce---eeEeecc---------------------chhhCCCcce----eeecccCCCcCeecchhh
Confidence            9986511   1111110                     1111111222    456778999999999995

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=92.59  E-value=1.1  Score=44.70  Aligned_cols=101  Identities=19%  Similarity=0.156  Sum_probs=71.3

Q ss_pred             EeE-EEcCCCCeEEEEeccCceEEEEEeCCC-CCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            3 IRF-LHDPSKDIGFVGCALASTMVRFSKTQD-GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         3 vr~-afhP~g~~aYvv~ELsstV~~~~~d~~-g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      ||+ -|||..++.-++.-=..+|++|.-... -.+.+.++-+               +-+++|.+||-.--|.||--.+-
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs---------------AP~~gicfspsne~l~vsVG~Dk  231 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS---------------APCRGICFSPSNEALLVSVGYDK  231 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhcc---------------CCcCcceecCCccceEEEecccc
Confidence            554 489999999998888888998865321 1122112111               33589999999999999999899


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC-eeEEECCCCCEEEEEeC
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP-QMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP-r~~~lspdGk~LyvaNs  154 (222)
                      .|-.||+..   .+++..+..                             .+    | -.++|+++|.+|.+.||
T Consensus       232 ki~~yD~~s---~~s~~~l~y-----------------------------~~----Plstvaf~~~G~~L~aG~s  270 (673)
T KOG4378|consen  232 KINIYDIRS---QASTDRLTY-----------------------------SH----PLSTVAFSECGTYLCAGNS  270 (673)
T ss_pred             eEEEeeccc---ccccceeee-----------------------------cC----CcceeeecCCceEEEeecC
Confidence            999999953   334333332                             01    3 56899999999999993

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.56  E-value=2.9  Score=41.94  Aligned_cols=76  Identities=18%  Similarity=0.195  Sum_probs=42.2

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEe-CCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSK-TQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~-d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      |..|+|+|++++++.. .+.+..+.. +..+.+....+ ..      ++.....+..++++.+||||+.|.+...  +.|
T Consensus       401 ~PsWspDG~~lw~v~d-g~~~~~v~~~~~~gql~~~~v-d~------ge~~~~~~g~Issl~wSpDG~RiA~i~~--g~v  470 (591)
T PRK13616        401 RPSWSLDADAVWVVVD-GNTVVRVIRDPATGQLARTPV-DA------SAVASRVPGPISELQLSRDGVRAAMIIG--GKV  470 (591)
T ss_pred             CceECCCCCceEEEec-CcceEEEeccCCCceEEEEec-cC------chhhhccCCCcCeEEECCCCCEEEEEEC--CEE
Confidence            6789999887777754 334444433 23333322211 11      1100012255799999999999987663  456


Q ss_pred             EEEEecC
Q 027522           83 RQYNIED   89 (222)
Q Consensus        83 ~vf~i~d   89 (222)
                      .+-.|..
T Consensus       471 ~Va~Vvr  477 (591)
T PRK13616        471 YLAVVEQ  477 (591)
T ss_pred             EEEEEEe
Confidence            5544433

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=92.52  E-value=1.6  Score=40.70  Aligned_cols=69  Identities=19%  Similarity=0.201  Sum_probs=49.0

Q ss_pred             EEEcCCCCeEEEEeccCceEEEE-EeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRF-SKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~-~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      +-|+|+||++-+..+ .+.+.++ .+  +|+  .++..+..|..   .      +.+.+-..+||++|+..+. ..+.|.
T Consensus       193 l~FS~dGK~iLlsT~-~s~~~~lDAf--~G~--~~~tfs~~~~~---~------~~~~~a~ftPds~Fvl~gs-~dg~i~  257 (311)
T KOG1446|consen  193 LEFSPDGKSILLSTN-ASFIYLLDAF--DGT--VKSTFSGYPNA---G------NLPLSATFTPDSKFVLSGS-DDGTIH  257 (311)
T ss_pred             eEEcCCCCEEEEEeC-CCcEEEEEcc--CCc--EeeeEeeccCC---C------CcceeEEECCCCcEEEEec-CCCcEE
Confidence            469999999988877 4555555 33  354  45555655432   1      4457889999999996554 789999


Q ss_pred             EEEec
Q 027522           84 QYNIE   88 (222)
Q Consensus        84 vf~i~   88 (222)
                      +|++.
T Consensus       258 vw~~~  262 (311)
T KOG1446|consen  258 VWNLE  262 (311)
T ss_pred             EEEcC
Confidence            99994

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=92.23  E-value=3.5  Score=43.64  Aligned_cols=70  Identities=20%  Similarity=0.200  Sum_probs=49.6

Q ss_pred             EcCCCCeEEEEeccCceEEEEEeCC------C----CCeeEE--EEEEecCcccccccCCCCCCceeEEEEcCCCCEEEE
Q 027522            7 HDPSKDIGFVGCALASTMVRFSKTQ------D----GSWNHE--VAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYF   74 (222)
Q Consensus         7 fhP~g~~aYvv~ELsstV~~~~~d~------~----g~~~~~--q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYv   74 (222)
                      |+|||++++...| +.-|.++.+.+      -    |.-.++  +.+.++... +        +-..|+.=||||++| |
T Consensus        77 ~S~dG~~lAsGSD-D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H-~--------~DV~Dv~Wsp~~~~l-v  145 (942)
T KOG0973|consen   77 FSPDGSYLASGSD-DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH-D--------SDVLDVNWSPDDSLL-V  145 (942)
T ss_pred             ECCCCCeEeeccC-cceEEEeeecccCCcccccccccccccceeeEEEEEecC-C--------CccceeccCCCccEE-E
Confidence            7899999999999 57778887752      0    111111  233444221 1        456999999999998 8


Q ss_pred             EeCCCCcEEEEEe
Q 027522           75 SNWLHGDIRQYNI   87 (222)
Q Consensus        75 SnRgh~sI~vf~i   87 (222)
                      |+-..++|.+|+-
T Consensus       146 S~s~DnsViiwn~  158 (942)
T KOG0973|consen  146 SVSLDNSVIIWNA  158 (942)
T ss_pred             EecccceEEEEcc
Confidence            8889999999976

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.12  E-value=9.2  Score=34.88  Aligned_cols=63  Identities=16%  Similarity=0.142  Sum_probs=41.0

Q ss_pred             EEcCCCCeEEEEeccC------ceEEEEEeCCCCCeeEEEEEEecCccc------ccccCCCCCCc-eeEEEEcCCCCEE
Q 027522            6 LHDPSKDIGFVGCALA------STMVRFSKTQDGSWNHEVAISVKSLKV------QNWILPEMPGL-ITDFLISLDDRFL   72 (222)
Q Consensus         6 afhP~g~~aYvv~ELs------stV~~~~~d~~g~~~~~q~is~~p~~~------~g~~~~~~~~~-~adI~iSpDgrfL   72 (222)
                      ++ +....+||..|-.      ..|.+|..  +|++  .+.+.+|+.-.      .+.    -+|. -=.|.++|||+.|
T Consensus        91 ~~-~~~g~~~is~E~~~~~~~~p~I~~~~~--~G~~--~~~~~vP~~~~~~~~~~~~~----~~N~G~E~la~~~dG~~l  161 (326)
T PF13449_consen   91 AV-PPDGSFWISSEGGRTGGIPPRIRRFDL--DGRV--IRRFPVPAAFLPDANGTSGR----RNNRGFEGLAVSPDGRTL  161 (326)
T ss_pred             EE-ecCCCEEEEeCCccCCCCCCEEEEECC--CCcc--cceEccccccccccCccccc----cCCCCeEEEEECCCCCEE
Confidence            44 5566789999999      88988864  4666  44444443210      111    0122 3589999999999


Q ss_pred             EEEeC
Q 027522           73 YFSNW   77 (222)
Q Consensus        73 YvSnR   77 (222)
                      |+..-
T Consensus       162 ~~~~E  166 (326)
T PF13449_consen  162 FAAME  166 (326)
T ss_pred             EEEEC
Confidence            98875

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=91.88  E-value=2.8  Score=40.45  Aligned_cols=120  Identities=23%  Similarity=0.282  Sum_probs=64.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      |.|+|+|.+.|...-  ..++++-. ++-.|+-+.-+. .+            .....-.-||+||||..++-  ++-++
T Consensus       244 LkwSPdgd~lfaAt~--davfrlw~-e~q~wt~erw~l-gs------------grvqtacWspcGsfLLf~~s--gsp~l  305 (445)
T KOG2139|consen  244 LKWSPDGDVLFAATC--DAVFRLWQ-ENQSWTKERWIL-GS------------GRVQTACWSPCGSFLLFACS--GSPRL  305 (445)
T ss_pred             EEEcCCCCEEEEecc--cceeeeeh-hcccceecceec-cC------------CceeeeeecCCCCEEEEEEc--CCceE
Confidence            578999999887643  34554422 233555444332 22            22344467999999998885  45567


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccC-CCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR-GGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~-ggPr~~~lspdGk~LyvaN  153 (222)
                      |.+.-+++..+...  .+++-    .|..+-     +.++....-|+++. |.++-|+.+|.|.||.|.=
T Consensus       306 ysl~f~~~~~~~~~--~~~~k----~~llia-----DL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  306 YSLTFDGEDSVFLR--PQSIK----RVLLIA-----DLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             EEEeecCCCccccC--cccce----eeeeec-----cchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence            77754332222110  11110    011111     11222222244443 3469999999999999874

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=91.60  E-value=5.8  Score=36.99  Aligned_cols=126  Identities=14%  Similarity=0.120  Sum_probs=75.3

Q ss_pred             eEEEcCCCCeEEEEec----cCceEEEEEeCCCC----CeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEE
Q 027522            4 RFLHDPSKDIGFVGCA----LASTMVRFSKTQDG----SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS   75 (222)
Q Consensus         4 r~afhP~g~~aYvv~E----LsstV~~~~~d~~g----~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvS   75 (222)
                      |.-|+++|+.+-+..+    -++.|.+|.-..+.    .-+...+|.++.            ..++-...+|-++|| ++
T Consensus        98 ~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~------------skit~a~Wg~l~~~i-i~  164 (327)
T KOG0643|consen   98 RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD------------SKITSALWGPLGETI-IA  164 (327)
T ss_pred             EEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc------------cceeeeeecccCCEE-EE
Confidence            5678999988888777    34557777543111    111122333321            345777899999999 55


Q ss_pred             eCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCC
Q 027522           76 NWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSL  155 (222)
Q Consensus        76 nRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl  155 (222)
                      +--.++|++|++..  ..+++......                           ++.    =.+||+|||..+.+-+.  
T Consensus       165 Ghe~G~is~~da~~--g~~~v~s~~~h---------------------------~~~----Ind~q~s~d~T~FiT~s--  209 (327)
T KOG0643|consen  165 GHEDGSISIYDART--GKELVDSDEEH---------------------------SSK----INDLQFSRDRTYFITGS--  209 (327)
T ss_pred             ecCCCcEEEEEccc--Cceeeechhhh---------------------------ccc----cccccccCCcceEEecc--
Confidence            55679999999843  13343222211                           122    67899999998766554  


Q ss_pred             CCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEe
Q 027522          156 FSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVD  195 (222)
Q Consensus       156 ~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vd  195 (222)
                                    ...+-..+|+.    .|++.+.|..|
T Consensus       210 --------------~Dttakl~D~~----tl~v~Kty~te  231 (327)
T KOG0643|consen  210 --------------KDTTAKLVDVR----TLEVLKTYTTE  231 (327)
T ss_pred             --------------cCccceeeecc----ceeeEEEeeec
Confidence                          23344446654    45666666554

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=91.43  E-value=4.7  Score=38.07  Aligned_cols=77  Identities=19%  Similarity=0.257  Sum_probs=50.7

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCC-cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHG-DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG  136 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~-sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~gg  136 (222)
                      +.+|-+.|+.||..|-.+. -.| =|++|+..+   ++++.+..-|                            .. +..
T Consensus       182 s~Iacv~Ln~~Gt~vATaS-tkGTLIRIFdt~~---g~~l~E~RRG----------------------------~d-~A~  228 (346)
T KOG2111|consen  182 SDIACVALNLQGTLVATAS-TKGTLIRIFDTED---GTLLQELRRG----------------------------VD-RAD  228 (346)
T ss_pred             CceeEEEEcCCccEEEEec-cCcEEEEEEEcCC---CcEeeeeecC----------------------------Cc-hhe
Confidence            4468889999999885444 444 478887643   5555443332                            11 011


Q ss_pred             CeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeC
Q 027522          137 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNS  181 (222)
Q Consensus       137 Pr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~  181 (222)
                      =-.|++|||+.||.|+.        .      +...+||.+..++
T Consensus       229 iy~iaFSp~~s~LavsS--------d------KgTlHiF~l~~~~  259 (346)
T KOG2111|consen  229 IYCIAFSPNSSWLAVSS--------D------KGTLHIFSLRDTE  259 (346)
T ss_pred             EEEEEeCCCccEEEEEc--------C------CCeEEEEEeecCC
Confidence            35789999999999997        2      3578888875533

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.35  E-value=2.4  Score=40.85  Aligned_cols=30  Identities=23%  Similarity=0.302  Sum_probs=22.2

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d   89 (222)
                      +..-|+++||||+||- |- +.++-+||++.+
T Consensus       187 ~eV~DL~FS~dgk~la-si-g~d~~~VW~~~~  216 (398)
T KOG0771|consen  187 AEVKDLDFSPDGKFLA-SI-GADSARVWSVNT  216 (398)
T ss_pred             CccccceeCCCCcEEE-Ee-cCCceEEEEecc
Confidence            4467999999999984 33 234888998854

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=91.26  E-value=1  Score=47.16  Aligned_cols=73  Identities=18%  Similarity=0.304  Sum_probs=51.1

Q ss_pred             CeEeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         1 levr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      ++.|++|||+|...-+.+ ...+|.+|...   .|........  ....        ..-+++..||.|+||-+|. ..|
T Consensus       190 i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~---~we~~f~Lr~--~~~s--------s~~~~~~wsPnG~YiAAs~-~~g  254 (933)
T KOG1274|consen  190 ICTRLAWHPKGGTLAVPP-VDNTVKVYSRK---GWELQFKLRD--KLSS--------SKFSDLQWSPNGKYIAAST-LDG  254 (933)
T ss_pred             eeeeeeecCCCCeEEeec-cCCeEEEEccC---Cceeheeecc--cccc--------cceEEEEEcCCCcEEeeec-cCC
Confidence            357999999954444443 57999999763   4655544332  1111        2258999999999996655 789


Q ss_pred             cEEEEEec
Q 027522           81 DIRQYNIE   88 (222)
Q Consensus        81 sI~vf~i~   88 (222)
                      .|.+|+++
T Consensus       255 ~I~vWnv~  262 (933)
T KOG1274|consen  255 QILVWNVD  262 (933)
T ss_pred             cEEEEecc
Confidence            99999995

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=91.08  E-value=4.5  Score=39.71  Aligned_cols=62  Identities=11%  Similarity=0.185  Sum_probs=44.2

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP  137 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP  137 (222)
                      +...+|.+|-+|-||-+.+ .+++|..||+..   .+...++..-                          .++.    -
T Consensus       390 ~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRK---l~n~kt~~l~--------------------------~~~~----v  435 (506)
T KOG0289|consen  390 GPVKAISFSENGYWLATAA-DDGSVKLWDLRK---LKNFKTIQLD--------------------------EKKE----V  435 (506)
T ss_pred             CceeEEEeccCceEEEEEe-cCCeEEEEEehh---hcccceeecc--------------------------cccc----c
Confidence            4478999999999999887 356699999943   3332333331                          1222    5


Q ss_pred             eeEEECCCCCEEEEEe
Q 027522          138 QMIQLSLDGKRLYVTN  153 (222)
Q Consensus       138 r~~~lspdGk~LyvaN  153 (222)
                      ..+.|+..|++|.++-
T Consensus       436 ~s~~fD~SGt~L~~~g  451 (506)
T KOG0289|consen  436 NSLSFDQSGTYLGIAG  451 (506)
T ss_pred             eeEEEcCCCCeEEeec
Confidence            6889999999998885

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=91.02  E-value=3.8  Score=36.76  Aligned_cols=90  Identities=13%  Similarity=0.236  Sum_probs=51.2

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP  137 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP  137 (222)
                      .-++.|...||.+.||+-+=..+.|  |.++.  .++++.+++..|.                         |     -|
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i--~els~--~G~vlr~i~l~g~-------------------------~-----D~   67 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEI--YELSL--DGKVLRRIPLDGF-------------------------G-----DY   67 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEE--EEEET--T--EEEEEE-SS--------------------------S-----SE
T ss_pred             CCccccEEcCCCCeEEEEECCCCEE--EEEcC--CCCEEEEEeCCCC-------------------------C-----Cc
Confidence            4479999999999999776556666  45532  3778899988663                         1     27


Q ss_pred             eeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeec--cceeEecC
Q 027522          138 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAIN--PNFFVDFE  197 (222)
Q Consensus       138 r~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~--~~f~vdf~  197 (222)
                      ..++..-+|+++++.                +....++.++++..+..+...  +.+.+++.
T Consensus        68 EgI~y~g~~~~vl~~----------------Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~  113 (248)
T PF06977_consen   68 EGITYLGNGRYVLSE----------------ERDQRLYIFTIDDDTTSLDRADVQKISLGFP  113 (248)
T ss_dssp             EEEEE-STTEEEEEE----------------TTTTEEEEEEE----TT--EEEEEEEE---S
T ss_pred             eeEEEECCCEEEEEE----------------cCCCcEEEEEEeccccccchhhceEEecccc
Confidence            788888777655443                245677777777777766533  45555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.70  E-value=3.9  Score=39.93  Aligned_cols=95  Identities=14%  Similarity=0.133  Sum_probs=53.0

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP  137 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP  137 (222)
                      ..+-+|.+.|||| |||+-|..+.|.+++-. ....+.+..+..  .         .            ...|   .+|+
T Consensus        30 ~~Pw~maflPDG~-llVtER~~G~I~~v~~~-~~~~~~~~~l~~--v---------~------------~~~g---e~GL   81 (454)
T TIGR03606        30 NKPWALLWGPDNQ-LWVTERATGKILRVNPE-TGEVKVVFTLPE--I---------V------------NDAQ---HNGL   81 (454)
T ss_pred             CCceEEEEcCCCe-EEEEEecCCEEEEEeCC-CCceeeeecCCc--e---------e------------ccCC---CCce
Confidence            3458999999996 66888877888877431 122222111110  0         0            0002   3568


Q ss_pred             eeEEECCCC------CEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522          138 QMIQLSLDG------KRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       138 r~~~lspdG------k~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l  186 (222)
                      =.|+|+||=      ++|||+.+- +.=+.+     ......|.|+..+..+..+
T Consensus        82 lglal~PdF~~~~~n~~lYvsyt~-~~~~~~-----~~~~~~I~R~~l~~~~~~l  130 (454)
T TIGR03606        82 LGLALHPDFMQEKGNPYVYISYTY-KNGDKE-----LPNHTKIVRYTYDKSTQTL  130 (454)
T ss_pred             eeEEECCCccccCCCcEEEEEEec-cCCCCC-----ccCCcEEEEEEecCCCCcc
Confidence            899999884      689999741 000000     0024578887776544444

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=90.31  E-value=7.5  Score=37.97  Aligned_cols=77  Identities=14%  Similarity=0.082  Sum_probs=49.9

Q ss_pred             EeEEEcCCCCeEEEEec--------------------cCceEEEEEeCCCCCeeEEE---------------EEEecCcc
Q 027522            3 IRFLHDPSKDIGFVGCA--------------------LASTMVRFSKTQDGSWNHEV---------------AISVKSLK   47 (222)
Q Consensus         3 vr~afhP~g~~aYvv~E--------------------LsstV~~~~~d~~g~~~~~q---------------~is~~p~~   47 (222)
                      .|.+|||+|+++-..|=                    -+-.|+-+.+..+|.+.+.-               -|.++.  
T Consensus       265 s~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~--  342 (459)
T KOG0272|consen  265 SRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA--  342 (459)
T ss_pred             eeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec--
Confidence            48899999998766552                    22336666555555443321               122222  


Q ss_pred             cccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522           48 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        48 ~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d   89 (222)
                        |..     ..+.++..||+|-.| +++-+++++.|||+..
T Consensus       343 --gH~-----k~I~~V~fsPNGy~l-ATgs~Dnt~kVWDLR~  376 (459)
T KOG0272|consen  343 --GHI-----KEILSVAFSPNGYHL-ATGSSDNTCKVWDLRM  376 (459)
T ss_pred             --ccc-----cceeeEeECCCceEE-eecCCCCcEEEeeecc
Confidence              221     236889999999777 7777899999999954

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=90.16  E-value=12  Score=39.09  Aligned_cols=127  Identities=13%  Similarity=0.195  Sum_probs=79.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++++|||.++-..+| +++|-+|... .|--    .++.. +.   .      +..+++.++.+|+.|..|+ .+|+|+.
T Consensus       356 l~YSpDgq~iaTG~e-DgKVKvWn~~-SgfC----~vTFt-eH---t------s~Vt~v~f~~~g~~llssS-LDGtVRA  418 (893)
T KOG0291|consen  356 LAYSPDGQLIATGAE-DGKVKVWNTQ-SGFC----FVTFT-EH---T------SGVTAVQFTARGNVLLSSS-LDGTVRA  418 (893)
T ss_pred             EEECCCCcEEEeccC-CCcEEEEecc-CceE----EEEec-cC---C------CceEEEEEEecCCEEEEee-cCCeEEe
Confidence            678888888888887 7777777542 2211    11211 11   1      5569999999999997666 8999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY  164 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y  164 (222)
                      ||+.. .  +=-.+...                     |++     ..    =..++.+|.|.-+.++.        |  
T Consensus       419 wDlkR-Y--rNfRTft~---------------------P~p-----~Q----fscvavD~sGelV~AG~--------~--  455 (893)
T KOG0291|consen  419 WDLKR-Y--RNFRTFTS---------------------PEP-----IQ----FSCVAVDPSGELVCAGA--------Q--  455 (893)
T ss_pred             eeecc-c--ceeeeecC---------------------CCc-----ee----eeEEEEcCCCCEEEeec--------c--
Confidence            99854 1  11011111                     110     00    22456788899877776        5  


Q ss_pred             cccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcc
Q 027522          165 PELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPAL  205 (222)
Q Consensus       165 p~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~  205 (222)
                           |.=-|+...+  .||.|       +|--..--||--
T Consensus       456 -----d~F~IfvWS~--qTGql-------lDiLsGHEgPVs  482 (893)
T KOG0291|consen  456 -----DSFEIFVWSV--QTGQL-------LDILSGHEGPVS  482 (893)
T ss_pred             -----ceEEEEEEEe--ecCee-------eehhcCCCCcce
Confidence                 5777777755  88987       454444455543

>PRK13616 lipoprotein LpqB; Provisional

Probab=89.92  E-value=16  Score=36.68  Aligned_cols=19  Identities=37%  Similarity=0.338  Sum_probs=16.6

Q ss_pred             CCCeeEEECCCCCEEEEEe
Q 027522          135 GGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus       135 ggPr~~~lspdGk~LyvaN  153 (222)
                      +++..+.+||||+||.+.-
T Consensus       448 g~Issl~wSpDG~RiA~i~  466 (591)
T PRK13616        448 GPISELQLSRDGVRAAMII  466 (591)
T ss_pred             CCcCeEEECCCCCEEEEEE
Confidence            4589999999999999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=89.64  E-value=1.8  Score=42.09  Aligned_cols=146  Identities=21%  Similarity=0.356  Sum_probs=90.4

Q ss_pred             EEEcCC-CCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPS-KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~-g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ..|||. ....-+.|..+.+|-.|..+..   +..       ..++|.     +...+.++.+|+||||-..+..+ +=+
T Consensus       223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e---~~l-------~~l~gH-----~~RVs~VafHPsG~~L~TasfD~-tWR  286 (459)
T KOG0272|consen  223 AVFHPVDSDLNLATASADGTVKLWKLSQE---TPL-------QDLEGH-----LARVSRVAFHPSGKFLGTASFDS-TWR  286 (459)
T ss_pred             EEEccCCCccceeeeccCCceeeeccCCC---cch-------hhhhcc-----hhhheeeeecCCCceeeeccccc-chh
Confidence            579998 4667778888888888877532   111       223333     15579999999999998888654 678


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCC---CCccc
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSL---FSAWD  160 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl---~~~wd  160 (222)
                      .||+.. ..--|    .-.|.-                       +|      --++++-+||. |.++-.|   =--||
T Consensus       287 lWD~~t-k~ElL----~QEGHs-----------------------~~------v~~iaf~~DGS-L~~tGGlD~~~RvWD  331 (459)
T KOG0272|consen  287 LWDLET-KSELL----LQEGHS-----------------------KG------VFSIAFQPDGS-LAATGGLDSLGRVWD  331 (459)
T ss_pred             hccccc-chhhH----hhcccc-----------------------cc------cceeEecCCCc-eeeccCccchhheee
Confidence            899854 22222    111210                       12      34789999997 5555432   22355


Q ss_pred             cccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCCCcCcccc
Q 027522          161 CQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIW  221 (222)
Q Consensus       161 ~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~gd~~sd~~  221 (222)
                      -.-       +..|+-++     |  -+.+-|.|+|.  |+|    -+|-=.++|||--||
T Consensus       332 lRt-------gr~im~L~-----g--H~k~I~~V~fs--PNG----y~lATgs~Dnt~kVW  372 (459)
T KOG0272|consen  332 LRT-------GRCIMFLA-----G--HIKEILSVAFS--PNG----YHLATGSSDNTCKVW  372 (459)
T ss_pred             ccc-------CcEEEEec-----c--cccceeeEeEC--CCc----eEEeecCCCCcEEEe
Confidence            442       22222221     1  24566778885  566    567778999999888

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=89.52  E-value=2.2  Score=44.50  Aligned_cols=65  Identities=15%  Similarity=0.154  Sum_probs=49.9

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      |.|+|+|+|+-+. .++++|.+|..- .|.+  +..+.+.             +.+..+..||.|-||-++-++++.|..
T Consensus       582 ~~FS~DgrWlisa-smD~tIr~wDlp-t~~l--ID~~~vd-------------~~~~sls~SPngD~LAT~Hvd~~gIyl  644 (910)
T KOG1539|consen  582 MTFSPDGRWLISA-SMDSTIRTWDLP-TGTL--IDGLLVD-------------SPCTSLSFSPNGDFLATVHVDQNGIYL  644 (910)
T ss_pred             eEeCCCCcEEEEe-ecCCcEEEEecc-Ccce--eeeEecC-------------CcceeeEECCCCCEEEEEEecCceEEE
Confidence            7899999998655 489999999763 3432  2333221             446899999999999999999999988


Q ss_pred             EE
Q 027522           85 YN   86 (222)
Q Consensus        85 f~   86 (222)
                      |.
T Consensus       645 Ws  646 (910)
T KOG1539|consen  645 WS  646 (910)
T ss_pred             EE
Confidence            84

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.47  E-value=6.5  Score=36.16  Aligned_cols=60  Identities=18%  Similarity=0.205  Sum_probs=36.5

Q ss_pred             ceeEEEEcCCCCEEEEEe-CCCCc---EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccC
Q 027522           59 LITDFLISLDDRFLYFSN-WLHGD---IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR  134 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSn-Rgh~s---I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~  134 (222)
                      ....+.+||||++|-++- .+.++   |.++++   .+++++...-.                            +-.  
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl---~tg~~l~d~i~----------------------------~~~--  171 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDL---ETGKFLPDGIE----------------------------NPK--  171 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEET---TTTEEEEEEEE----------------------------EEE--
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEEC---CCCcCcCCccc----------------------------ccc--
Confidence            446899999999887663 33333   555554   34565432111                            011  


Q ss_pred             CCCeeEEECCCCCEEEEEe
Q 027522          135 GGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus       135 ggPr~~~lspdGk~LyvaN  153 (222)
                        ...|..++||+.||.+.
T Consensus       172 --~~~~~W~~d~~~~~y~~  188 (414)
T PF02897_consen  172 --FSSVSWSDDGKGFFYTR  188 (414)
T ss_dssp             --SEEEEECTTSSEEEEEE
T ss_pred             --cceEEEeCCCCEEEEEE
Confidence              33489999999887775

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=89.40  E-value=12  Score=33.89  Aligned_cols=59  Identities=12%  Similarity=0.198  Sum_probs=42.3

Q ss_pred             ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCC-----CEEEEEeCCCCcEEEEEecC
Q 027522           22 STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDD-----RFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        22 stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDg-----rfLYvSnRgh~sI~vf~i~d   89 (222)
                      .+|..|... +++  ..+++.+|+.-..+.      +...+|+|....     .|+|++.-+...|.||++..
T Consensus        34 pKLv~~Dl~-t~~--li~~~~~p~~~~~~~------s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~   97 (287)
T PF03022_consen   34 PKLVAFDLK-TNQ--LIRRYPFPPDIAPPD------SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLAT   97 (287)
T ss_dssp             -EEEEEETT-TTC--EEEEEE--CCCS-TC------GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTT
T ss_pred             cEEEEEECC-CCc--EEEEEECChHHcccc------cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccC
Confidence            468888764 343  678888886555433      667999999833     79999999999999999964

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=89.30  E-value=26  Score=35.27  Aligned_cols=74  Identities=18%  Similarity=0.153  Sum_probs=52.5

Q ss_pred             CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCce
Q 027522           32 DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPV  111 (222)
Q Consensus        32 ~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~  111 (222)
                      .+++....++++|-           ++.+.-+..||+...|-+.| -+++|..||... . -++  .+..          
T Consensus       245 r~klqrvsvtsipL-----------~s~v~~ca~sp~E~kLvlGC-~DgSiiLyD~~~-~-~t~--~~ka----------  298 (545)
T PF11768_consen  245 RNKLQRVSVTSIPL-----------PSQVICCARSPSEDKLVLGC-EDGSIILYDTTR-G-VTL--LAKA----------  298 (545)
T ss_pred             cCceeEEEEEEEec-----------CCcceEEecCcccceEEEEe-cCCeEEEEEcCC-C-eee--eeee----------
Confidence            34666666666652           24568889999999998888 589999998843 2 112  1221          


Q ss_pred             eeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522          112 VAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus       112 ~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                                        .-.    |..++..|+|..+.|+|
T Consensus       299 ------------------~~~----P~~iaWHp~gai~~V~s  318 (545)
T PF11768_consen  299 ------------------EFI----PTLIAWHPDGAIFVVGS  318 (545)
T ss_pred             ------------------ccc----ceEEEEcCCCcEEEEEc
Confidence                              011    88999999999999999

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=89.22  E-value=9.4  Score=35.50  Aligned_cols=116  Identities=18%  Similarity=0.271  Sum_probs=75.6

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP  137 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP  137 (222)
                      -..-+|.-+.++.+.+..| |-|.|-+..-  | .++.+..|.                    .||..+           
T Consensus       148 ~e~ne~~w~~~nd~Fflt~-GlG~v~ILsy--p-sLkpv~si~--------------------AH~snC-----------  192 (313)
T KOG1407|consen  148 FEVNEISWNNSNDLFFLTN-GLGCVEILSY--P-SLKPVQSIK--------------------AHPSNC-----------  192 (313)
T ss_pred             ceeeeeeecCCCCEEEEec-CCceEEEEec--c-ccccccccc--------------------cCCcce-----------
Confidence            4457888888888887777 6677766544  2 233333333                    344332           


Q ss_pred             eeEEECCCCCEEEE--EeCCCCccccccccccccCCcEEEEEEee------CCCCCe--eeccceeEecCCCCCCCccee
Q 027522          138 QMIQLSLDGKRLYV--TNSLFSAWDCQFYPELKEKGSHMLQIDVN------SEKGGM--AINPNFFVDFEAEPDGPALAH  207 (222)
Q Consensus       138 r~~~lspdGk~Lyv--aNsl~~~wd~Q~yp~~~s~~~~i~~~dvd------~~~G~l--~~~~~f~vdf~~~~~g~~~~h  207 (222)
                      =.+.++|+||++-+  |.+|-|-||-++   ++ =--.+-|.|.-      .-+|+|  .-.++-+||-...+.| .+.|
T Consensus       193 icI~f~p~GryfA~GsADAlvSLWD~~E---Li-C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG-d~~~  267 (313)
T KOG1407|consen  193 ICIEFDPDGRYFATGSADALVSLWDVDE---LI-CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG-DRVW  267 (313)
T ss_pred             EEEEECCCCceEeeccccceeeccChhH---hh-hheeeccccCceEEEEeccCcceeeccCccceEEeEecccC-CeEE
Confidence            14788999999986  578999999984   33 01112222221      134777  4789999999999999 8999


Q ss_pred             eeecCC
Q 027522          208 EMRYPG  213 (222)
Q Consensus       208 ~~r~~~  213 (222)
                      ||.-.|
T Consensus       268 eI~~~~  273 (313)
T KOG1407|consen  268 EIPCEG  273 (313)
T ss_pred             EeeccC
Confidence            997443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=89.11  E-value=2.5  Score=40.27  Aligned_cols=115  Identities=13%  Similarity=0.175  Sum_probs=72.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      |+|||-..-.+.+.--+.++-.+..+..+-+   ++.-       |.     .+.++.+...+||..||+-.|-.+.|-+
T Consensus       213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl---~llg-------gh-----~gGvThL~~~edGn~lfsGaRk~dkIl~  277 (406)
T KOG2919|consen  213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL---QLLG-------GH-----GGGVTHLQWCEDGNKLFSGARKDDKILC  277 (406)
T ss_pred             eeccCCCCcceeeecccceeeeEecCCCCce---eeec-------cc-----CCCeeeEEeccCcCeecccccCCCeEEE
Confidence            6778877766666666666666665432212   2211       11     1567999999999999999999999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE--eCCCCccccc
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT--NSLFSAWDCQ  162 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva--Nsl~~~wd~Q  162 (222)
                      |||..-..+..    .+++... +               |    +-+      =.|-|+|+|++|.-.  .-+-+-||-+
T Consensus       278 WDiR~~~~pv~----~L~rhv~-~---------------T----NQR------I~FDld~~~~~LasG~tdG~V~vwdlk  327 (406)
T KOG2919|consen  278 WDIRYSRDPVY----ALERHVG-D---------------T----NQR------ILFDLDPKGEILASGDTDGSVRVWDLK  327 (406)
T ss_pred             Eeehhccchhh----hhhhhcc-C---------------c----cce------EEEecCCCCceeeccCCCccEEEEecC
Confidence            99954222311    2221110 0               0    001      157889999998754  4566778877


Q ss_pred             cc
Q 027522          163 FY  164 (222)
Q Consensus       163 ~y  164 (222)
                      .|
T Consensus       328 ~~  329 (406)
T KOG2919|consen  328 DL  329 (406)
T ss_pred             CC
Confidence            53

>PLN00181 protein SPA1-RELATED; Provisional

Probab=88.96  E-value=9.8  Score=38.59  Aligned_cols=71  Identities=10%  Similarity=0.087  Sum_probs=43.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCC---CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC-CCEEEEEeCCCC
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQ---DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD-DRFLYFSNWLHG   80 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~---~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD-grfLYvSnRgh~   80 (222)
                      ++|+|+|+++.+..+ +.+|.+|....   ++......+..+     .+.      .....+..++. +++|. |+-..+
T Consensus       489 i~fs~dg~~latgg~-D~~I~iwd~~~~~~~~~~~~~~~~~~-----~~~------~~v~~l~~~~~~~~~la-s~~~Dg  555 (793)
T PLN00181        489 IGFDRDGEFFATAGV-NKKIKIFECESIIKDGRDIHYPVVEL-----ASR------SKLSGICWNSYIKSQVA-SSNFEG  555 (793)
T ss_pred             EEECCCCCEEEEEeC-CCEEEEEECCcccccccccccceEEe-----ccc------CceeeEEeccCCCCEEE-EEeCCC
Confidence            689999998888775 78888886531   111110111111     111      23467788775 56654 444688


Q ss_pred             cEEEEEec
Q 027522           81 DIRQYNIE   88 (222)
Q Consensus        81 sI~vf~i~   88 (222)
                      .|++|++.
T Consensus       556 ~v~lWd~~  563 (793)
T PLN00181        556 VVQVWDVA  563 (793)
T ss_pred             eEEEEECC
Confidence            99999984

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=88.93  E-value=13  Score=34.42  Aligned_cols=82  Identities=16%  Similarity=0.195  Sum_probs=53.0

Q ss_pred             eEeEEEcCCCCeEEEEeccCceEEEEEeCCCC------CeeEEEEEEec---C---cccccccCCCCCCceeEEEEcCCC
Q 027522            2 QIRFLHDPSKDIGFVGCALASTMVRFSKTQDG------SWNHEVAISVK---S---LKVQNWILPEMPGLITDFLISLDD   69 (222)
Q Consensus         2 evr~afhP~g~~aYvv~ELsstV~~~~~d~~g------~~~~~q~is~~---p---~~~~g~~~~~~~~~~adI~iSpDg   69 (222)
                      -|||-=--.|+....+.--+|.|-++....++      .+.......+-   |   ..|++-     .+..+.+-+.-||
T Consensus        21 TIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h-----~kNVtaVgF~~dg   95 (311)
T KOG0315|consen   21 TIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGH-----TKNVTAVGFQCDG   95 (311)
T ss_pred             eeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEecc-----CCceEEEEEeecC
Confidence            36666666677777777777777777665432      23333333322   1   112221     1457899999999


Q ss_pred             CEEEEEeCCCCcEEEEEecC
Q 027522           70 RFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        70 rfLYvSnRgh~sI~vf~i~d   89 (222)
                      ||+|.+. -++++++|++..
T Consensus        96 rWMyTgs-eDgt~kIWdlR~  114 (311)
T KOG0315|consen   96 RWMYTGS-EDGTVKIWDLRS  114 (311)
T ss_pred             eEEEecC-CCceEEEEeccC
Confidence            9999886 578999999954

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=88.77  E-value=2.9  Score=41.69  Aligned_cols=58  Identities=26%  Similarity=0.519  Sum_probs=40.2

Q ss_pred             CeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCee----eccceeEecCCCCCCCcceeeeecC
Q 027522          137 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA----INPNFFVDFEAEPDGPALAHEMRYP  212 (222)
Q Consensus       137 Pr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~----~~~~f~vdf~~~~~g~~~~h~~r~~  212 (222)
                      --.+.+|+|||++.|||                +.-.+..+|+|  ||..+    -....-+||.--|++-.+|  --||
T Consensus       404 I~av~vs~dGK~~vvaN----------------dr~el~vidid--ngnv~~idkS~~~lItdf~~~~nsr~iA--YafP  463 (668)
T COG4946         404 IEAVKVSPDGKKVVVAN----------------DRFELWVIDID--NGNVRLIDKSEYGLITDFDWHPNSRWIA--YAFP  463 (668)
T ss_pred             eEEEEEcCCCcEEEEEc----------------CceEEEEEEec--CCCeeEecccccceeEEEEEcCCceeEE--EecC
Confidence            34678999999999999                56677778885  55554    3344566888888884443  3455


Q ss_pred             CC
Q 027522          213 GG  214 (222)
Q Consensus       213 ~g  214 (222)
                      .|
T Consensus       464 ~g  465 (668)
T COG4946         464 EG  465 (668)
T ss_pred             cc
Confidence            44

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=88.61  E-value=6.4  Score=40.70  Aligned_cols=75  Identities=13%  Similarity=0.193  Sum_probs=50.9

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      +++++||++.|..|  ++.|-...- ++|+..      ++...-+.      +...+++.|+||+..||...|.. -+++
T Consensus        25 ~~~s~nG~~L~t~~--~d~Vi~idv-~t~~~~------l~s~~~ed------~d~ita~~l~~d~~~L~~a~rs~-llrv   88 (775)
T KOG0319|consen   25 VAWSSNGQHLYTAC--GDRVIIIDV-ATGSIA------LPSGSNED------EDEITALALTPDEEVLVTASRSQ-LLRV   88 (775)
T ss_pred             eeECCCCCEEEEec--CceEEEEEc-cCCcee------cccCCccc------hhhhheeeecCCccEEEEeeccc-eEEE
Confidence            57899999999875  566666654 344332      22211111      14569999999999999998854 7999


Q ss_pred             EEecCCCCCeEEEE
Q 027522           85 YNIEDPKNPVLTGQ   98 (222)
Q Consensus        85 f~i~d~~~~~L~~~   98 (222)
                      |++..   ++++..
T Consensus        89 ~~L~t---gk~irs   99 (775)
T KOG0319|consen   89 WSLPT---GKLIRS   99 (775)
T ss_pred             EEccc---chHhHh
Confidence            99943   456443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=88.50  E-value=9.5  Score=37.52  Aligned_cols=63  Identities=24%  Similarity=0.203  Sum_probs=45.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCC-CeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522           59 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKN-PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP  137 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~-~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP  137 (222)
                      ..+.+.+.|--- |.+|.-+.|.|+.|.|.+... ..++..++.-                                |.-
T Consensus       382 Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~--------------------------------GfV  428 (479)
T KOG0299|consen  382 WITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLSLV--------------------------------GFV  428 (479)
T ss_pred             ceeeeEecccCc-eEEecCCCCceEEEEecCCccccceeeecccc--------------------------------cEE
Confidence            467777777544 557777899999999976422 3444444443                                336


Q ss_pred             eeEEECCCCCEEEEEeC
Q 027522          138 QMIQLSLDGKRLYVTNS  154 (222)
Q Consensus       138 r~~~lspdGk~LyvaNs  154 (222)
                      +.++++++|+||+|+-.
T Consensus       429 Nsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  429 NSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             EEEEEccCCCEEEEecc
Confidence            67899999999999974

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=88.43  E-value=1.3  Score=27.29  Aligned_cols=31  Identities=19%  Similarity=0.381  Sum_probs=27.5

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIE   88 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~   88 (222)
                      ..+..|.++++++.||-+.+....|.+++++
T Consensus         9 ~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~   39 (43)
T smart00135        9 GHPNGLAVDWIEGRLYWTDWGLDVIEVANLD   39 (43)
T ss_pred             CCcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence            3457899999999999999999999999884

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.37  E-value=1.4  Score=27.52  Aligned_cols=27  Identities=22%  Similarity=0.327  Sum_probs=17.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCC--CcEEEE
Q 027522           59 LITDFLISLDDRFLYFSNWLH--GDIRQY   85 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnRgh--~sI~vf   85 (222)
                      .-....+|||||+||.+...+  +.--+|
T Consensus        10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen   10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            347889999998887554444  444443

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=88.19  E-value=1.8  Score=44.42  Aligned_cols=60  Identities=20%  Similarity=0.195  Sum_probs=42.9

Q ss_pred             ceeEEEEcCCCCEEEEEeC----CCCcEEEEEecCC-CCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCccc
Q 027522           59 LITDFLISLDDRFLYFSNW----LHGDIRQYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL  133 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnR----gh~sI~vf~i~d~-~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~  133 (222)
                      ..+++.+||+|.++--|||    -|-.|++|..+.- ....|.++--+                                
T Consensus       527 Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLT--------------------------------  574 (764)
T KOG1063|consen  527 EVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLT--------------------------------  574 (764)
T ss_pred             eEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceE--------------------------------
Confidence            4789999999999999999    4678999987541 11122221111                                


Q ss_pred             CCCCeeEEECCCCCEEEEEe
Q 027522          134 RGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus       134 ~ggPr~~~lspdGk~LyvaN  153 (222)
                         --.+++|||||||+.+.
T Consensus       575 ---VT~l~FSpdg~~LLsvs  591 (764)
T KOG1063|consen  575 ---VTRLAFSPDGRYLLSVS  591 (764)
T ss_pred             ---EEEEEECCCCcEEEEee
Confidence               23589999999999886

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=88.15  E-value=7.8  Score=36.47  Aligned_cols=69  Identities=19%  Similarity=0.116  Sum_probs=42.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ..|+|+|. +|+.+-=++|.-.|...++-++   .+.+  ++.   .+     ...+-+.+|..||.||+. -....+-+
T Consensus       235 v~ffP~G~-afatGSDD~tcRlyDlRaD~~~---a~ys--~~~---~~-----~gitSv~FS~SGRlLfag-y~d~~c~v  299 (343)
T KOG0286|consen  235 VRFFPSGD-AFATGSDDATCRLYDLRADQEL---AVYS--HDS---II-----CGITSVAFSKSGRLLFAG-YDDFTCNV  299 (343)
T ss_pred             EEEccCCC-eeeecCCCceeEEEeecCCcEE---eeec--cCc---cc-----CCceeEEEcccccEEEee-ecCCceeE
Confidence            45888885 4555554777766665443112   2222  111   11     235889999999999987 45677888


Q ss_pred             EEec
Q 027522           85 YNIE   88 (222)
Q Consensus        85 f~i~   88 (222)
                      ||.-
T Consensus       300 WDtl  303 (343)
T KOG0286|consen  300 WDTL  303 (343)
T ss_pred             eecc
Confidence            9763

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.07  E-value=3.3  Score=40.06  Aligned_cols=59  Identities=19%  Similarity=0.196  Sum_probs=41.6

Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCE
Q 027522           69 DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKR  148 (222)
Q Consensus        69 grfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~  148 (222)
                      |+.|.++.  ++.|..||++.   .+++.+|.+.+                                 .+.+..|++|.+
T Consensus       117 G~LL~~~~--~~~i~~yDw~~---~~~i~~i~v~~---------------------------------vk~V~Ws~~g~~  158 (443)
T PF04053_consen  117 GNLLGVKS--SDFICFYDWET---GKLIRRIDVSA---------------------------------VKYVIWSDDGEL  158 (443)
T ss_dssp             SSSEEEEE--TTEEEEE-TTT-----EEEEESS-E----------------------------------EEEEE-TTSSE
T ss_pred             CcEEEEEC--CCCEEEEEhhH---cceeeEEecCC---------------------------------CcEEEEECCCCE
Confidence            99998885  56799998853   67888887610                                 378999999999


Q ss_pred             EEEEeCCCCccccccccccccCCcEEEEEEee
Q 027522          149 LYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       149 LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd  180 (222)
                      +..+.               +++..|++++.+
T Consensus       159 val~t---------------~~~i~il~~~~~  175 (443)
T PF04053_consen  159 VALVT---------------KDSIYILKYNLE  175 (443)
T ss_dssp             EEEE----------------S-SEEEEEE-HH
T ss_pred             EEEEe---------------CCeEEEEEecch
Confidence            99998               578999998776

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=87.96  E-value=4.8  Score=40.39  Aligned_cols=63  Identities=14%  Similarity=0.210  Sum_probs=45.6

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP  137 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP  137 (222)
                      |+...+.|+||||.|.|-.- ..++++||+..| ++++-.+...-+                           --    =
T Consensus       466 nyiRSckL~pdgrtLivGGe-astlsiWDLAap-Tprikaeltssa---------------------------pa----C  512 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGE-ASTLSIWDLAAP-TPRIKAELTSSA---------------------------PA----C  512 (705)
T ss_pred             cceeeeEecCCCceEEeccc-cceeeeeeccCC-CcchhhhcCCcc---------------------------hh----h
Confidence            77899999999999999876 568999999653 344422222211                           00    1


Q ss_pred             eeEEECCCCCEEEEEe
Q 027522          138 QMIQLSLDGKRLYVTN  153 (222)
Q Consensus       138 r~~~lspdGk~LyvaN  153 (222)
                      ..+++|||-|-.|.+.
T Consensus       513 yALa~spDakvcFscc  528 (705)
T KOG0639|consen  513 YALAISPDAKVCFSCC  528 (705)
T ss_pred             hhhhcCCccceeeeec
Confidence            3678899999999998

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=87.55  E-value=1.8  Score=26.59  Aligned_cols=30  Identities=17%  Similarity=0.162  Sum_probs=23.9

Q ss_pred             CCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEee
Q 027522          136 GPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       136 gPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd  180 (222)
                      .|+.+++++.+++||-++        .       ....|.+.+.|
T Consensus        10 ~~~~la~d~~~~~lYw~D--------~-------~~~~I~~~~~~   39 (43)
T smart00135       10 HPNGLAVDWIEGRLYWTD--------W-------GLDVIEVANLD   39 (43)
T ss_pred             CcCEEEEeecCCEEEEEe--------C-------CCCEEEEEeCC
Confidence            399999999999999999        3       34666666664

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=87.51  E-value=1  Score=34.31  Aligned_cols=18  Identities=39%  Similarity=0.381  Sum_probs=16.8

Q ss_pred             CCeeEEECCCCCEEEEEe
Q 027522          136 GPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus       136 gPr~~~lspdGk~LyvaN  153 (222)
                      .|+-+++|||+|+||||.
T Consensus        55 ~aNGI~~s~~~k~lyVa~   72 (86)
T PF01731_consen   55 FANGIAISPDKKYLYVAS   72 (86)
T ss_pred             CCceEEEcCCCCEEEEEe
Confidence            389999999999999998

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=87.46  E-value=4.5  Score=39.94  Aligned_cols=104  Identities=11%  Similarity=0.095  Sum_probs=66.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      +.|=|+|++.-...| +++|.+|.+...   ...+.|.-+       .+.+|    -.|.++|.|+|+-+-+ ..+-|++
T Consensus       348 i~F~~~g~rFissSD-dks~riWe~~~~---v~ik~i~~~-------~~hsm----P~~~~~P~~~~~~aQs-~dN~i~i  411 (503)
T KOG0282|consen  348 ITFVDEGRRFISSSD-DKSVRIWENRIP---VPIKNIADP-------EMHTM----PCLTLHPNGKWFAAQS-MDNYIAI  411 (503)
T ss_pred             eEEccCCceEeeecc-CccEEEEEcCCC---ccchhhcch-------hhccC----cceecCCCCCeehhhc-cCceEEE
Confidence            467778877666666 557777766421   111221111       11222    2578999999986555 6789999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |.+..+..... -++                            -.|..+.|-+=.+.+||||++|.-.+
T Consensus       412 fs~~~~~r~nk-kK~----------------------------feGh~vaGys~~v~fSpDG~~l~SGd  451 (503)
T KOG0282|consen  412 FSTVPPFRLNK-KKR----------------------------FEGHSVAGYSCQVDFSPDGRTLCSGD  451 (503)
T ss_pred             EecccccccCH-hhh----------------------------hcceeccCceeeEEEcCCCCeEEeec
Confidence            99854432211 001                            13677778888999999999999888

>PLN00181 protein SPA1-RELATED; Provisional

Probab=87.26  E-value=30  Score=35.11  Aligned_cols=70  Identities=9%  Similarity=0.081  Sum_probs=39.9

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcC-CCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISL-DDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp-DgrfLYvSnRgh~sI   82 (222)
                      .++|+|..+...+.+-.+.+|.+|... .++  ....+       .+.     ......|.++| |+.+|. |.-.++.|
T Consensus       537 ~l~~~~~~~~~las~~~Dg~v~lWd~~-~~~--~~~~~-------~~H-----~~~V~~l~~~p~~~~~L~-Sgs~Dg~v  600 (793)
T PLN00181        537 GICWNSYIKSQVASSNFEGVVQVWDVA-RSQ--LVTEM-------KEH-----EKRVWSIDYSSADPTLLA-SGSDDGSV  600 (793)
T ss_pred             eEEeccCCCCEEEEEeCCCeEEEEECC-CCe--EEEEe-------cCC-----CCCEEEEEEcCCCCCEEE-EEcCCCEE
Confidence            356666533333444457788877653 221  11111       111     03468999997 666664 44467899


Q ss_pred             EEEEecC
Q 027522           83 RQYNIED   89 (222)
Q Consensus        83 ~vf~i~d   89 (222)
                      .+|++..
T Consensus       601 ~iWd~~~  607 (793)
T PLN00181        601 KLWSINQ  607 (793)
T ss_pred             EEEECCC
Confidence            9999953

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=87.17  E-value=11  Score=38.75  Aligned_cols=107  Identities=10%  Similarity=0.058  Sum_probs=62.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      .+-+|+|++.-+..-..=+|+++.++  +....+.+-..+...          -.++.|.++-|+.-|++..--+.++-.
T Consensus       388 ~aiSPdg~~Ia~st~~~~~iy~L~~~--~~vk~~~v~~~~~~~----------~~a~~i~ftid~~k~~~~s~~~~~le~  455 (691)
T KOG2048|consen  388 AAISPDGNLIAISTVSRTKIYRLQPD--PNVKVINVDDVPLAL----------LDASAISFTIDKNKLFLVSKNIFSLEE  455 (691)
T ss_pred             eccCCCCCEEEEeeccceEEEEeccC--cceeEEEeccchhhh----------ccceeeEEEecCceEEEEecccceeEE
Confidence            35689998888777766677777774  344433333332111          125789999888776655544556666


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |+.+.|..-.|.+..+.                     +.   +.      .=-.++.|+||.||.|++
T Consensus       456 ~el~~ps~kel~~~~~~---------------------~~---~~------~I~~l~~SsdG~yiaa~~  494 (691)
T KOG2048|consen  456 FELETPSFKELKSIQSQ---------------------AK---CP------SISRLVVSSDGNYIAAIS  494 (691)
T ss_pred             EEecCcchhhhhccccc---------------------cC---CC------cceeEEEcCCCCEEEEEe
Confidence            65543322223211111                     10   01      124689999999999998

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=87.10  E-value=26  Score=32.73  Aligned_cols=115  Identities=15%  Similarity=0.232  Sum_probs=69.8

Q ss_pred             EEEcCC-CCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPS-KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~-g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      +++||. |. .+.-|--+.+|-.+.......|+-+.+++   +..+        .....|+-||.||+|-+... +.++.
T Consensus        20 ~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld---~~hk--------rsVRsvAwsp~g~~La~aSF-D~t~~   86 (312)
T KOG0645|consen   20 VAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLD---DGHK--------RSVRSVAWSPHGRYLASASF-DATVV   86 (312)
T ss_pred             EEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEecc---ccch--------heeeeeeecCCCcEEEEeec-cceEE
Confidence            689998 55 44445557777777654334676665543   2111        44689999999998865554 56788


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccc
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQF  163 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~  163 (222)
                      +|.-.+ +.-+-+..+.  |.                           .  ---.-++.|++|.+|--|.        . 
T Consensus        87 Iw~k~~-~efecv~~lE--GH---------------------------E--nEVK~Vaws~sG~~LATCS--------R-  125 (312)
T KOG0645|consen   87 IWKKED-GEFECVATLE--GH---------------------------E--NEVKCVAWSASGNYLATCS--------R-  125 (312)
T ss_pred             EeecCC-CceeEEeeee--cc---------------------------c--cceeEEEEcCCCCEEEEee--------C-
Confidence            886543 2222322222  11                           0  0034679999999886665        4 


Q ss_pred             ccccccCCcEEEEEE
Q 027522          164 YPELKEKGSHMLQID  178 (222)
Q Consensus       164 yp~~~s~~~~i~~~d  178 (222)
                           .++..|..+|
T Consensus       126 -----DKSVWiWe~d  135 (312)
T KOG0645|consen  126 -----DKSVWIWEID  135 (312)
T ss_pred             -----CCeEEEEEec
Confidence                 2567777775

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=87.02  E-value=1.9  Score=41.18  Aligned_cols=99  Identities=14%  Similarity=0.113  Sum_probs=64.5

Q ss_pred             EEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCC
Q 027522           38 EVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDD  117 (222)
Q Consensus        38 ~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~  117 (222)
                      .|+.++...+..- ...+.++..+.|.-|||||.+-...--|-.|.||.+.. .++.++.....                
T Consensus        73 vqvwsl~Qpew~c-kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t-~~~~~~~~pK~----------------  134 (447)
T KOG4497|consen   73 VQVWSLVQPEWYC-KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT-QKGYLLPHPKT----------------  134 (447)
T ss_pred             EEEEEeecceeEE-EeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc-ceeEEeccccc----------------
Confidence            3555655433321 12334577899999999999998887888999999943 44555322222                


Q ss_pred             CCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEE
Q 027522          118 GQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQ  176 (222)
Q Consensus       118 ~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~  176 (222)
                                        +-+-.++.|||++.-++    ++-|+.+|=..-+-..+++.
T Consensus       135 ------------------~~kg~~f~~dg~f~ai~----sRrDCkdyv~i~~c~~W~ll  171 (447)
T KOG4497|consen  135 ------------------NVKGYAFHPDGQFCAIL----SRRDCKDYVQISSCKAWILL  171 (447)
T ss_pred             ------------------CceeEEECCCCceeeee----ecccHHHHHHHHhhHHHHHH
Confidence                              13457999999987555    46688877665544444444

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=86.88  E-value=12  Score=37.57  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=26.5

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP   90 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~   90 (222)
                      +..+.++.||||-||-|..- .+.|-+|.|++.
T Consensus       448 ~~ls~v~ysp~G~~lAvgs~-d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  448 EQLSVVRYSPDGAFLAVGSH-DNHIYIYRVSAN  479 (626)
T ss_pred             CceEEEEEcCCCCEEEEecC-CCeEEEEEECCC
Confidence            34689999999999998763 578999999653

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=86.87  E-value=23  Score=31.79  Aligned_cols=107  Identities=15%  Similarity=0.179  Sum_probs=62.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+.+..|+++=-...|+.+..  +|+  .++.+.+..  +.         -.=+|...-+|+|+-++.|. +.+.+
T Consensus        27 LTy~pd~~tLfaV~d~~~~i~els~--~G~--vlr~i~l~g--~~---------D~EgI~y~g~~~~vl~~Er~-~~L~~   90 (248)
T PF06977_consen   27 LTYNPDTGTLFAVQDEPGEIYELSL--DGK--VLRRIPLDG--FG---------DYEGITYLGNGRYVLSEERD-QRLYI   90 (248)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEET--T----EEEEEE-SS---S---------SEEEEEE-STTEEEEEETTT-TEEEE
T ss_pred             cEEcCCCCeEEEEECCCCEEEEEcC--CCC--EEEEEeCCC--CC---------CceeEEEECCCEEEEEEcCC-CcEEE
Confidence            6899998777777666888877765  464  356666532  21         13578888999999888775 58999


Q ss_pred             EEecCCCCCeE---EEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVL---TGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L---~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++++.....-   +.++.++-.                       ..+..   |-.-++.+|.+++|||+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~-----------------------~~~N~---G~EGla~D~~~~~L~v~k  136 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFP-----------------------NKGNK---GFEGLAYDPKTNRLFVAK  136 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S--------------------------SS-----EEEEEETTTTEEEEEE
T ss_pred             EEEeccccccchhhceEEecccc-----------------------cCCCc---ceEEEEEcCCCCEEEEEe
Confidence            99954322111   123333100                       00111   245689999999999997

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=86.81  E-value=25  Score=33.97  Aligned_cols=78  Identities=13%  Similarity=0.064  Sum_probs=40.6

Q ss_pred             CCCeEEEEeccCceEEEEEeCCCCCeeEEE------EEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522           10 SKDIGFVGCALASTMVRFSKTQDGSWNHEV------AISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus        10 ~g~~aYvv~ELsstV~~~~~d~~g~~~~~q------~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      +|.++|-+.|-.-+|+.+.+.-+|++-+..      .+.-...+..-+.+.+.-+-..=+.-+|-+++|.+-+ -+++|+
T Consensus        95 ~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~-~DGsvW  173 (399)
T KOG0296|consen   95 TGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGS-TDGSVW  173 (399)
T ss_pred             CCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeec-CCCcEE
Confidence            355666666666777777665444433321      1110111111111110001223356788888887655 589999


Q ss_pred             EEEec
Q 027522           84 QYNIE   88 (222)
Q Consensus        84 vf~i~   88 (222)
                      +|.|.
T Consensus       174 mw~ip  178 (399)
T KOG0296|consen  174 MWQIP  178 (399)
T ss_pred             EEECC
Confidence            99994

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=86.73  E-value=5.2  Score=39.53  Aligned_cols=57  Identities=26%  Similarity=0.424  Sum_probs=44.7

Q ss_pred             eEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeE
Q 027522           61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI  140 (222)
Q Consensus        61 adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~  140 (222)
                      +||+= -||++||+.+  .+.|.++++.+++..+++++|...|.                                |+.|
T Consensus        15 aDiVK-TDG~yIY~v~--~~~l~Iida~p~~~~~~~s~I~~~~~--------------------------------~~eL   59 (521)
T PF09826_consen   15 ADIVK-TDGEYIYVVS--GGRLYIIDAYPAEEMKVVSRIDLDGS--------------------------------PQEL   59 (521)
T ss_pred             CcEEE-ECCCEEEEEe--CCEEEEEECCCchhceEEEEEecCCC--------------------------------hhhe
Confidence            78866 5999999999  48899999965677888888887331                                7777


Q ss_pred             EECCCCCEEEEEeC
Q 027522          141 QLSLDGKRLYVTNS  154 (222)
Q Consensus       141 ~lspdGk~LyvaNs  154 (222)
                      =|  +|.+|.|--+
T Consensus        60 yl--~gdrLvVi~~   71 (521)
T PF09826_consen   60 YL--DGDRLVVIGS   71 (521)
T ss_pred             EE--cCCEEEEEEe
Confidence            77  7778887653

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=86.20  E-value=6.4  Score=39.86  Aligned_cols=119  Identities=14%  Similarity=0.212  Sum_probs=69.7

Q ss_pred             EeEEEcCCCCeEEEE--eccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC-
Q 027522            3 IRFLHDPSKDIGFVG--CALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL-   78 (222)
Q Consensus         3 vr~afhP~g~~aYvv--~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg-   78 (222)
                      +-|++.|.|...-++  |+-.++|..|+... .+++.+.+.+   ++           ..+..+-.||.|||+-+.+-. 
T Consensus       449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~---dk-----------~~~N~vfwsPkG~fvvva~l~s  514 (698)
T KOG2314|consen  449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL---DK-----------KFANTVFWSPKGRFVVVAALVS  514 (698)
T ss_pred             eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh---cc-----------cccceEEEcCCCcEEEEEEecc
Confidence            347778887665554  44556677776642 2334332222   11           234789999999999998876 


Q ss_pred             -CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCC
Q 027522           79 -HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFS  157 (222)
Q Consensus        79 -h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~  157 (222)
                       .+++.-||.+- +..+.+   .                     .|+..         +-..+..+|+|||+..+.   |
T Consensus       515 ~~g~l~F~D~~~-a~~k~~---~---------------------~~eh~---------~at~veWDPtGRYvvT~s---s  557 (698)
T KOG2314|consen  515 RRGDLEFYDTDY-ADLKDT---A---------------------SPEHF---------AATEVEWDPTGRYVVTSS---S  557 (698)
T ss_pred             cccceEEEecch-hhhhhc---c---------------------Ccccc---------ccccceECCCCCEEEEee---e
Confidence             67788777642 122221   1                     11110         134567899999887665   4


Q ss_pred             ccccccccccccCCcEEEEE
Q 027522          158 AWDCQFYPELKEKGSHMLQI  177 (222)
Q Consensus       158 ~wd~Q~yp~~~s~~~~i~~~  177 (222)
                      -|-..-     .+|-.|+-+
T Consensus       558 ~wrhk~-----d~GYri~tf  572 (698)
T KOG2314|consen  558 SWRHKV-----DNGYRIFTF  572 (698)
T ss_pred             hhhhcc-----ccceEEEEe
Confidence            554443     456666655

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=85.85  E-value=18  Score=34.74  Aligned_cols=78  Identities=22%  Similarity=0.337  Sum_probs=49.0

Q ss_pred             eeEEEE--cC-CCCEEEEEeCCCCcEEEEEecCCCCCeE----EEEEEecceeecCCceeeeeCCCCCCCCCCccccCcc
Q 027522           60 ITDFLI--SL-DDRFLYFSNWLHGDIRQYNIEDPKNPVL----TGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR  132 (222)
Q Consensus        60 ~adI~i--Sp-DgrfLYvSnRgh~sI~vf~i~d~~~~~L----~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~  132 (222)
                      +..+.+  |+ +|++--.-|+-++.+.||.+.+.+++++    +.+..++                            ..
T Consensus       158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----------------------------sQ  209 (381)
T PF02333_consen  158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG----------------------------SQ  209 (381)
T ss_dssp             EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S----------------------------S-
T ss_pred             ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC----------------------------Cc
Confidence            456665  44 5775445566678999999976555544    4444331                            12


Q ss_pred             cCCCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCC
Q 027522          133 LRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGG  185 (222)
Q Consensus       133 ~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~  185 (222)
                          |.-+..+..-.+||++=        |        +.-|-+++.+++.|.
T Consensus       210 ----~EGCVVDDe~g~LYvgE--------E--------~~GIW~y~Aep~~~~  242 (381)
T PF02333_consen  210 ----PEGCVVDDETGRLYVGE--------E--------DVGIWRYDAEPEGGN  242 (381)
T ss_dssp             ----EEEEEEETTTTEEEEEE--------T--------TTEEEEEESSCCC-S
T ss_pred             ----ceEEEEecccCCEEEec--------C--------ccEEEEEecCCCCCC
Confidence                77788888888999985        3        566777788877764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=85.79  E-value=4.2  Score=39.67  Aligned_cols=70  Identities=20%  Similarity=0.224  Sum_probs=44.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeC-C-C----CCeeEE---------EEEE-----ec--CcccccccCCCCCCceeE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKT-Q-D----GSWNHE---------VAIS-----VK--SLKVQNWILPEMPGLITD   62 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d-~-~----g~~~~~---------q~is-----~~--p~~~~g~~~~~~~~~~ad   62 (222)
                      ++.+=|-++.||.|=|-..|..|.-. . +    |+.-.-         ++..     .+  +..+.|..+.   +.+.=
T Consensus       317 ilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~~ea~~vKGrkl~---GGPQM  393 (476)
T KOG0918|consen  317 ILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQPEALYVKGRKLR---GGPQM  393 (476)
T ss_pred             eEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCCCccceecCcccc---CCcee
Confidence            56677899999999999999888652 2 1    211111         1110     11  1112233222   56788


Q ss_pred             EEEcCCCCEEEEEeC
Q 027522           63 FLISLDDRFLYFSNW   77 (222)
Q Consensus        63 I~iSpDgrfLYvSnR   77 (222)
                      |.||.||+.|||+|-
T Consensus       394 lQLSLDGKRLYVt~S  408 (476)
T KOG0918|consen  394 LQLSLDGKRLYVTNS  408 (476)
T ss_pred             EEeccCCcEEEEEch
Confidence            999999999999996

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=85.65  E-value=9.2  Score=36.52  Aligned_cols=67  Identities=21%  Similarity=0.285  Sum_probs=47.0

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcc-cccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK-VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~-~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      +.|||.|.++-|..+- .++-+|.-+     +.+--++.-|.+ .+        ...+.++-|+.|+ |||..--+|.|.
T Consensus       222 iSfHPsGefllvgTdH-p~~rlYdv~-----T~QcfvsanPd~qht--------~ai~~V~Ys~t~~-lYvTaSkDG~Ik  286 (430)
T KOG0640|consen  222 ISFHPSGEFLLVGTDH-PTLRLYDVN-----TYQCFVSANPDDQHT--------GAITQVRYSSTGS-LYVTASKDGAIK  286 (430)
T ss_pred             EeecCCCceEEEecCC-CceeEEecc-----ceeEeeecCcccccc--------cceeEEEecCCcc-EEEEeccCCcEE
Confidence            6799999999999884 555555442     112223333322 22        4578999999998 799998999999


Q ss_pred             EEE
Q 027522           84 QYN   86 (222)
Q Consensus        84 vf~   86 (222)
                      .||
T Consensus       287 lwD  289 (430)
T KOG0640|consen  287 LWD  289 (430)
T ss_pred             eec
Confidence            995

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=85.61  E-value=9  Score=39.25  Aligned_cols=31  Identities=26%  Similarity=0.433  Sum_probs=27.2

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d   89 (222)
                      +..+-|.+|+||.|+-|++ ..+.|-+|++..
T Consensus       476 ~~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~  506 (691)
T KOG2048|consen  476 PSISRLVVSSDGNYIAAIS-TRGQIFVYNLET  506 (691)
T ss_pred             CcceeEEEcCCCCEEEEEe-ccceEEEEEccc
Confidence            5679999999999999999 778899998853

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=85.21  E-value=6.7  Score=38.27  Aligned_cols=83  Identities=14%  Similarity=0.160  Sum_probs=54.1

Q ss_pred             CCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCC
Q 027522           56 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG  135 (222)
Q Consensus        56 ~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~g  135 (222)
                      +.+..+.+-+|+||+-|-.|.| +|.+-+++...   ....+.....|...                       +..   
T Consensus       340 ~gg~vtSl~ls~~g~~lLsssR-Ddtl~viDlRt---~eI~~~~sA~g~k~-----------------------asD---  389 (459)
T KOG0288|consen  340 LGGRVTSLDLSMDGLELLSSSR-DDTLKVIDLRT---KEIRQTFSAEGFKC-----------------------ASD---  389 (459)
T ss_pred             cCcceeeEeeccCCeEEeeecC-CCceeeeeccc---ccEEEEeecccccc-----------------------ccc---
Confidence            3366799999999999999976 67899987732   11222223322211                       111   


Q ss_pred             CCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCee
Q 027522          136 GPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       136 gPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                       =.-.+|||||.|+.+..                -+..++..++  .+|++.
T Consensus       390 -wtrvvfSpd~~YvaAGS----------------~dgsv~iW~v--~tgKlE  422 (459)
T KOG0288|consen  390 -WTRVVFSPDGSYVAAGS----------------ADGSVYIWSV--FTGKLE  422 (459)
T ss_pred             -cceeEECCCCceeeecc----------------CCCcEEEEEc--cCceEE
Confidence             23479999999886665                3567777766  677763

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=84.93  E-value=18  Score=35.64  Aligned_cols=106  Identities=17%  Similarity=0.150  Sum_probs=64.3

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecC-cccccccCCCCCCceeEEEEcCCC--CEEEEEeCCCC
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKS-LKVQNWILPEMPGLITDFLISLDD--RFLYFSNWLHG   80 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p-~~~~g~~~~~~~~~~adI~iSpDg--rfLYvSnRgh~   80 (222)
                      .+.|+-||.+.+...- ++.|.+|...  ....+.+.-++.| -.+.+..+     ..+|+.|++-|  -.||.+. .+.
T Consensus       128 cL~fs~dgs~iiTgsk-Dg~V~vW~l~--~lv~a~~~~~~~p~~~f~~Htl-----sITDl~ig~Gg~~~rl~TaS-~D~  198 (476)
T KOG0646|consen  128 CLKFSDDGSHIITGSK-DGAVLVWLLT--DLVSADNDHSVKPLHIFSDHTL-----SITDLQIGSGGTNARLYTAS-EDR  198 (476)
T ss_pred             EEEEeCCCcEEEecCC-CccEEEEEEE--eecccccCCCccceeeeccCcc-----eeEEEEecCCCccceEEEec-CCc
Confidence            3678888888777654 6667776541  0111111112222 11223322     26899998764  4555554 467


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .|.+|+++.   +.|.-++..    |+                        .    +..++++|-++++|+.+
T Consensus       199 t~k~wdlS~---g~LLlti~f----p~------------------------s----i~av~lDpae~~~yiGt  236 (476)
T KOG0646|consen  199 TIKLWDLSL---GVLLLTITF----PS------------------------S----IKAVALDPAERVVYIGT  236 (476)
T ss_pred             eEEEEEecc---ceeeEEEec----CC------------------------c----ceeEEEcccccEEEecC
Confidence            899999965   566545443    11                        1    67899999999999999

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=84.73  E-value=19  Score=34.96  Aligned_cols=117  Identities=15%  Similarity=0.154  Sum_probs=64.2

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      +..++||...-...=-+++|.++..+ +|     +-+.+++...         ...+-++-||||.+|+++.- +...++
T Consensus       201 mqwn~dgt~l~tAS~gsssi~iWdpd-tg-----~~~pL~~~gl---------gg~slLkwSPdgd~lfaAt~-davfrl  264 (445)
T KOG2139|consen  201 MQWNEDGTILVTASFGSSSIMIWDPD-TG-----QKIPLIPKGL---------GGFSLLKWSPDGDVLFAATC-DAVFRL  264 (445)
T ss_pred             EEEcCCCCEEeecccCcceEEEEcCC-CC-----CcccccccCC---------CceeeEEEcCCCCEEEEecc-cceeee
Confidence            34555555544444445556666553 22     1223333322         34478999999999998753 444555


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY  164 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y  164 (222)
                      |.-..   -.-..+..+|                          .| +    -+.-..||+|++|+.+.           
T Consensus       265 w~e~q---~wt~erw~lg--------------------------sg-r----vqtacWspcGsfLLf~~-----------  299 (445)
T KOG2139|consen  265 WQENQ---SWTKERWILG--------------------------SG-R----VQTACWSPCGSFLLFAC-----------  299 (445)
T ss_pred             ehhcc---cceecceecc--------------------------CC-c----eeeeeecCCCCEEEEEE-----------
Confidence            53322   1111111111                          12 2    44558899999999998           


Q ss_pred             cccccCCcEEEEEEeeCCCCCe
Q 027522          165 PELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       165 p~~~s~~~~i~~~dvd~~~G~l  186 (222)
                          +..-.++....+.+.+..
T Consensus       300 ----sgsp~lysl~f~~~~~~~  317 (445)
T KOG2139|consen  300 ----SGSPRLYSLTFDGEDSVF  317 (445)
T ss_pred             ----cCCceEEEEeecCCCccc
Confidence                455666665555555544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=84.53  E-value=3.4  Score=24.99  Aligned_cols=28  Identities=29%  Similarity=0.382  Sum_probs=23.8

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEE
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYN   86 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~   86 (222)
                      ....+|.++|++++|.++. .++.|.+|+
T Consensus        12 ~~i~~i~~~~~~~~~~s~~-~D~~i~vwd   39 (39)
T PF00400_consen   12 SSINSIAWSPDGNFLASGS-SDGTIRVWD   39 (39)
T ss_dssp             SSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred             CcEEEEEEecccccceeeC-CCCEEEEEC
Confidence            4579999999999998887 477899985

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=84.17  E-value=10  Score=35.48  Aligned_cols=103  Identities=12%  Similarity=0.241  Sum_probs=62.2

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++++|||..+-- .+-+.++..+..++...      +-.+..    .      .....|.+||.--+|-+..  ..+|.+
T Consensus       198 ~~vSpDGslcas-Ggkdg~~~LwdL~~~k~------lysl~a----~------~~v~sl~fspnrywL~~at--~~sIkI  258 (315)
T KOG0279|consen  198 VTVSPDGSLCAS-GGKDGEAMLWDLNEGKN------LYSLEA----F------DIVNSLCFSPNRYWLCAAT--ATSIKI  258 (315)
T ss_pred             EEECCCCCEEec-CCCCceEEEEEccCCce------eEeccC----C------CeEeeEEecCCceeEeecc--CCceEE
Confidence            578899877655 34477788877653222      112211    1      3358999999988887664  567999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeE--EECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI--QLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~--~lspdGk~LyvaN  153 (222)
                      |+.+.   .+.+......++-+                    ..+    .+.|+.+  +.|+||..||..-
T Consensus       259 wdl~~---~~~v~~l~~d~~g~--------------------s~~----~~~~~clslaws~dG~tLf~g~  302 (315)
T KOG0279|consen  259 WDLES---KAVVEELKLDGIGP--------------------SSK----AGDPICLSLAWSADGQTLFAGY  302 (315)
T ss_pred             Eeccc---hhhhhhcccccccc--------------------ccc----cCCcEEEEEEEcCCCcEEEeee
Confidence            98843   33333333322211                    011    2237765  5588899999886

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.15  E-value=7.5  Score=36.70  Aligned_cols=58  Identities=10%  Similarity=0.103  Sum_probs=34.7

Q ss_pred             EEcCCCCeEEEEec-cCce---EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC
Q 027522            6 LHDPSKDIGFVGCA-LAST---MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW   77 (222)
Q Consensus         6 afhP~g~~aYvv~E-Lsst---V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR   77 (222)
                      +|||+|+++|...- .+..   |=+|..+  -.++..-.+++-     |       -.+-++.+.+|||.|-+.|-
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~-----G-------iGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTH-----G-------IGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccC-----C-------cCcceeEEecCCcEEEEeCC
Confidence            68999999997532 2222   3333322  223222222211     1       22589999999999999996

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=84.09  E-value=2.6  Score=42.27  Aligned_cols=72  Identities=10%  Similarity=0.040  Sum_probs=48.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      |+|+|||+++-++.+ +..+-+|+++..   ++.   -+--.-|.|         ---+.-||||||+-+- --+|=|.|
T Consensus       296 f~FS~DG~~LA~VSq-DGfLRvF~fdt~---eLl---g~mkSYFGG---------LLCvcWSPDGKyIvtG-GEDDLVtV  358 (636)
T KOG2394|consen  296 FAFSPDGKYLATVSQ-DGFLRIFDFDTQ---ELL---GVMKSYFGG---------LLCVCWSPDGKYIVTG-GEDDLVTV  358 (636)
T ss_pred             eeEcCCCceEEEEec-CceEEEeeccHH---HHH---HHHHhhccc---------eEEEEEcCCccEEEec-CCcceEEE
Confidence            799999999999998 788888888632   111   111111222         2557789999998554 34566889


Q ss_pred             EEecCCCCCeEE
Q 027522           85 YNIEDPKNPVLT   96 (222)
Q Consensus        85 f~i~d~~~~~L~   96 (222)
                      |.+.+   .++|
T Consensus       359 wSf~e---rRVV  367 (636)
T KOG2394|consen  359 WSFEE---RRVV  367 (636)
T ss_pred             EEecc---ceEE
Confidence            98854   4554

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=84.02  E-value=6.1  Score=38.42  Aligned_cols=68  Identities=10%  Similarity=0.213  Sum_probs=47.7

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -..|+||++++-... .+.+|-.+.-. +|++     +++.    .|..     +..+.|+-|.|-|.| ||+--+.++-
T Consensus       372 ~V~fSPd~r~IASaS-FDkSVkLW~g~-tGk~-----lasf----RGHv-----~~VYqvawsaDsRLl-VS~SkDsTLK  434 (480)
T KOG0271|consen  372 HVSFSPDGRYIASAS-FDKSVKLWDGR-TGKF-----LASF----RGHV-----AAVYQVAWSADSRLL-VSGSKDSTLK  434 (480)
T ss_pred             eEEECCCccEEEEee-cccceeeeeCC-Ccch-----hhhh----hhcc-----ceeEEEEeccCccEE-EEcCCCceEE
Confidence            357999998765443 57777777543 4543     2222    3331     346899999999977 8888899999


Q ss_pred             EEEec
Q 027522           84 QYNIE   88 (222)
Q Consensus        84 vf~i~   88 (222)
                      +|+|.
T Consensus       435 vw~V~  439 (480)
T KOG0271|consen  435 VWDVR  439 (480)
T ss_pred             EEEee
Confidence            99994

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=83.92  E-value=16  Score=34.63  Aligned_cols=71  Identities=13%  Similarity=0.154  Sum_probs=53.0

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|....+.+..--+++|-.|....+|.+..+...+.             ..-.-++.-|-||.-+|.+. -++++..
T Consensus        33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~-------------~~PvL~v~WsddgskVf~g~-~Dk~~k~   98 (347)
T KOG0647|consen   33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSH-------------DGPVLDVCWSDDGSKVFSGG-CDKQAKL   98 (347)
T ss_pred             eEeccccCceEEecccCCceEEEEEecCCcccchhhhcc-------------CCCeEEEEEccCCceEEeec-cCCceEE
Confidence            789998888888888899999988765565544322222             13357899999999998776 4788999


Q ss_pred             EEecC
Q 027522           85 YNIED   89 (222)
Q Consensus        85 f~i~d   89 (222)
                      ||+..
T Consensus        99 wDL~S  103 (347)
T KOG0647|consen   99 WDLAS  103 (347)
T ss_pred             EEccC
Confidence            99953

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=83.34  E-value=3.9  Score=24.40  Aligned_cols=26  Identities=8%  Similarity=0.192  Sum_probs=21.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522           59 LITDFLISLDDRFLYFSNWLHGDIRQY   85 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnRgh~sI~vf   85 (222)
                      .+.+|.++ ++-.|||+.++...|.+|
T Consensus         3 ~P~gvav~-~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    3 YPHGVAVD-SDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred             CCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence            46899999 556788999999999887

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=82.88  E-value=11  Score=34.78  Aligned_cols=59  Identities=19%  Similarity=0.198  Sum_probs=40.0

Q ss_pred             EEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC--eeE
Q 027522           63 FLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP--QMI  140 (222)
Q Consensus        63 I~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP--r~~  140 (222)
                      ++++.|||.|-+-   .+++.-.+-..++=...+++..+    ++|                      ..    |  |-+
T Consensus         3 ~~~~~~Gk~lAi~---qd~~iEiRsa~Ddf~si~~kcqV----pkD----------------------~~----PQWRkl   49 (282)
T PF15492_consen    3 LALSSDGKLLAIL---QDQCIEIRSAKDDFSSIIGKCQV----PKD----------------------PN----PQWRKL   49 (282)
T ss_pred             eeecCCCcEEEEE---eccEEEEEeccCCchheeEEEec----CCC----------------------CC----chheEE
Confidence            6789999999875   46666565544333445566654    221                      11    3  779


Q ss_pred             EECCCCCEEEEEeC
Q 027522          141 QLSLDGKRLYVTNS  154 (222)
Q Consensus       141 ~lspdGk~LyvaNs  154 (222)
                      +.|||+..|..|+|
T Consensus        50 ~WSpD~tlLa~a~S   63 (282)
T PF15492_consen   50 AWSPDCTLLAYAES   63 (282)
T ss_pred             EECCCCcEEEEEcC
Confidence            99999999999984

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=82.84  E-value=23  Score=35.49  Aligned_cols=96  Identities=15%  Similarity=0.192  Sum_probs=58.5

Q ss_pred             EEEcCCCCeEEEEe-ccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC--CCc
Q 027522            5 FLHDPSKDIGFVGC-ALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL--HGD   81 (222)
Q Consensus         5 ~afhP~g~~aYvv~-ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg--h~s   81 (222)
                      |+|+|.++..=|+. -+.+++..|...  |.+    + ...|+.-.           -.|.+||-+|+.-++..+  .++
T Consensus       280 f~W~p~S~~F~vi~g~~pa~~s~~~lr--~Nl----~-~~~Pe~~r-----------NT~~fsp~~r~il~agF~nl~gn  341 (561)
T COG5354         280 FTWEPLSSRFAVISGYMPASVSVFDLR--GNL----R-FYFPEQKR-----------NTIFFSPHERYILFAGFDNLQGN  341 (561)
T ss_pred             eeecccCCceeEEecccccceeecccc--cce----E-EecCCccc-----------ccccccCcccEEEEecCCccccc
Confidence            55666665555554 566666666443  221    2 22222212           357899999999998875  699


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |-+|+..  ++-+.++.+..                             ..    -+-...||||.+++++.
T Consensus       342 i~i~~~~--~rf~~~~~~~~-----------------------------~n----~s~~~wspd~qF~~~~~  378 (561)
T COG5354         342 IEIFDPA--GRFKVAGAFNG-----------------------------LN----TSYCDWSPDGQFYDTDT  378 (561)
T ss_pred             eEEeccC--CceEEEEEeec-----------------------------CC----ceEeeccCCceEEEecC
Confidence            9999763  33344333332                             11    34556799999999886

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=82.70  E-value=1.7  Score=43.99  Aligned_cols=35  Identities=26%  Similarity=0.450  Sum_probs=30.8

Q ss_pred             CCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522           55 EMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        55 ~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d   89 (222)
                      +||..++.|.+||||+||.++.-=.=.|.+|++..
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan   83 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN   83 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEccc
Confidence            47788999999999999999987778899999854

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.61  E-value=3.6  Score=39.65  Aligned_cols=62  Identities=16%  Similarity=0.239  Sum_probs=46.7

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP  137 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP  137 (222)
                      +..+.+.+-|+|.|+|+.| -++.++.||+..   ++|.+.-.                              +.+.|++
T Consensus       248 ~~is~~~l~p~gn~Iy~gn-~~g~l~~FD~r~---~kl~g~~~------------------------------kg~tGsi  293 (412)
T KOG3881|consen  248 NPISSTGLTPSGNFIYTGN-TKGQLAKFDLRG---GKLLGCGL------------------------------KGITGSI  293 (412)
T ss_pred             CcceeeeecCCCcEEEEec-ccchhheecccC---ceeecccc------------------------------CCccCCc
Confidence            5678999999999999999 478899998843   55632211                              1245679


Q ss_pred             eeEEECCCCCEEEEEe
Q 027522          138 QMIQLSLDGKRLYVTN  153 (222)
Q Consensus       138 r~~~lspdGk~LyvaN  153 (222)
                      |.+...|.+++|..|-
T Consensus       294 rsih~hp~~~~las~G  309 (412)
T KOG3881|consen  294 RSIHCHPTHPVLASCG  309 (412)
T ss_pred             ceEEEcCCCceEEeec
Confidence            9999999998776554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=82.56  E-value=42  Score=33.23  Aligned_cols=59  Identities=19%  Similarity=0.275  Sum_probs=41.1

Q ss_pred             eeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCee
Q 027522           60 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM  139 (222)
Q Consensus        60 ~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~  139 (222)
                      .+.+.++|||- |++..-.++.|.+|++..+.+   +.+.+                             |..  |--+.
T Consensus       350 ~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~---~a~Fp-----------------------------ght--~~vk~  394 (506)
T KOG0289|consen  350 YTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTN---VAKFP-----------------------------GHT--GPVKA  394 (506)
T ss_pred             eEEeeEcCCce-EEeccCCCceEEEEEcCCccc---cccCC-----------------------------CCC--CceeE
Confidence            47789999996 457777789999999965321   11111                             211  11478


Q ss_pred             EEECCCCCEEEEEe
Q 027522          140 IQLSLDGKRLYVTN  153 (222)
Q Consensus       140 ~~lspdGk~LyvaN  153 (222)
                      +++|-+|-||.++.
T Consensus       395 i~FsENGY~Lat~a  408 (506)
T KOG0289|consen  395 ISFSENGYWLATAA  408 (506)
T ss_pred             EEeccCceEEEEEe
Confidence            99999999999997

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=82.39  E-value=1.6  Score=43.72  Aligned_cols=29  Identities=24%  Similarity=0.477  Sum_probs=22.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 027522           59 LITDFLISLDDRFLYFSNWLHGDIRQYNIE   88 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~   88 (222)
                      .+-.+..||||++|-+=. -++-+++|+-+
T Consensus       292 ~in~f~FS~DG~~LA~VS-qDGfLRvF~fd  320 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLATVS-QDGFLRIFDFD  320 (636)
T ss_pred             cccceeEcCCCceEEEEe-cCceEEEeecc
Confidence            456899999999996333 36789999884

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.89  E-value=5.6  Score=38.43  Aligned_cols=80  Identities=18%  Similarity=0.267  Sum_probs=52.5

Q ss_pred             CCCceeEEEEcCC-CCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccC
Q 027522           56 MPGLITDFLISLD-DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR  134 (222)
Q Consensus        56 ~~~~~adI~iSpD-grfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~  134 (222)
                      +|-..++|.+-++ ..+-+|.+-..+.++.||+...-+|  +.++...                            ..  
T Consensus       201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--V~~fd~~----------------------------E~--  248 (412)
T KOG3881|consen  201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--VAQFDFL----------------------------EN--  248 (412)
T ss_pred             eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc--eeEeccc----------------------------cC--
Confidence            5677889987665 3555555555668999988532233  4444442                            11  


Q ss_pred             CCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522          135 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       135 ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l  186 (222)
                       .=-.+.+.|+|+++|++|+                ...|..||.  .+|.+
T Consensus       249 -~is~~~l~p~gn~Iy~gn~----------------~g~l~~FD~--r~~kl  281 (412)
T KOG3881|consen  249 -PISSTGLTPSGNFIYTGNT----------------KGQLAKFDL--RGGKL  281 (412)
T ss_pred             -cceeeeecCCCcEEEEecc----------------cchhheecc--cCcee
Confidence             1247899999999999993                567777855  55544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.92  E-value=6.7  Score=35.84  Aligned_cols=17  Identities=29%  Similarity=0.217  Sum_probs=13.9

Q ss_pred             CeeEEECCCCCEEEEEe
Q 027522          137 PQMIQLSLDGKRLYVTN  153 (222)
Q Consensus       137 Pr~~~lspdGk~LyvaN  153 (222)
                      .+...+||||++|....
T Consensus        45 ~~~~~~sP~g~~~~~v~   61 (353)
T PF00930_consen   45 LQDAKWSPDGKYIAFVR   61 (353)
T ss_dssp             BSEEEE-SSSTEEEEEE
T ss_pred             cccceeecCCCeeEEEe
Confidence            67899999999988775

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=80.75  E-value=8.2  Score=37.49  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=27.7

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeE
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL   95 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L   95 (222)
                      .-+.|+.=|||++|| ++.++.+++.+||+..   +.+
T Consensus       124 ~diydL~Ws~d~~~l-~s~s~dns~~l~Dv~~---G~l  157 (434)
T KOG1009|consen  124 DDIYDLAWSPDSNFL-VSGSVDNSVRLWDVHA---GQL  157 (434)
T ss_pred             cchhhhhccCCCcee-eeeeccceEEEEEecc---cee
Confidence            346899999999999 6667999999999943   555

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=80.43  E-value=33  Score=32.95  Aligned_cols=86  Identities=15%  Similarity=0.240  Sum_probs=50.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEE--cCCC-CEEEEEeCCCCc
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLI--SLDD-RFLYFSNWLHGD   81 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~i--SpDg-rfLYvSnRgh~s   81 (222)
                      ++.+....++|+..| +--||+|.-++++......+..+....+.        +-.-.|.|  ..+| .||.||+-|.++
T Consensus       213 CVVDDe~g~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g~~l~--------aDvEGlaly~~~~g~gYLivSsQG~~s  283 (381)
T PF02333_consen  213 CVVDDETGRLYVGEE-DVGIWRYDAEPEGGNDRTLVASADGDGLV--------ADVEGLALYYGSDGKGYLIVSSQGDNS  283 (381)
T ss_dssp             EEEETTTTEEEEEET-TTEEEEEESSCCC-S--EEEEEBSSSSB---------S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred             EEEecccCCEEEecC-ccEEEEEecCCCCCCcceeeecccccccc--------cCccceEEEecCCCCeEEEEEcCCCCe
Confidence            345666778999777 67899987765544333333333222221        11233444  4555 599999999999


Q ss_pred             EEEEEecCCCCCeEEEEEEe
Q 027522           82 IRQYNIEDPKNPVLTGQIWV  101 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~  101 (222)
                      .++|+...+  -..++...+
T Consensus       284 f~Vy~r~~~--~~~~g~f~i  301 (381)
T PF02333_consen  284 FAVYDREGP--NAYVGSFRI  301 (381)
T ss_dssp             EEEEESSTT----EEEEEEE
T ss_pred             EEEEecCCC--CcccceEEe
Confidence            999998543  345555554

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=80.31  E-value=9.1  Score=36.54  Aligned_cols=105  Identities=12%  Similarity=0.127  Sum_probs=62.2

Q ss_pred             EEcCCCCeEEEEeccCceEEEEEeC------------CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEE
Q 027522            6 LHDPSKDIGFVGCALASTMVRFSKT------------QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLY   73 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV~~~~~d------------~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLY   73 (222)
                      +|+|||.++-...+ +.+|-.+.-.            .++.-+...+|.++=..++         ...++.++|-..-|-
T Consensus       119 afs~DG~lvATGsa-D~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d---------evn~l~FHPre~ILi  188 (430)
T KOG0640|consen  119 AFSPDGSLVATGSA-DASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD---------EVNDLDFHPRETILI  188 (430)
T ss_pred             eeCCCCcEEEccCC-cceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC---------cccceeecchhheEE
Confidence            68888887766665 4455554321            0122222245555433332         247888999988885


Q ss_pred             EEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           74 FSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        74 vSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                       |.-.++.|-.||++.+...+- -              ++.++             -..    -|.+.+.|.|.+|+|+.
T Consensus       189 -S~srD~tvKlFDfsK~saKrA-~--------------K~~qd-------------~~~----vrsiSfHPsGefllvgT  235 (430)
T KOG0640|consen  189 -SGSRDNTVKLFDFSKTSAKRA-F--------------KVFQD-------------TEP----VRSISFHPSGEFLLVGT  235 (430)
T ss_pred             -eccCCCeEEEEecccHHHHHH-H--------------HHhhc-------------cce----eeeEeecCCCceEEEec
Confidence             444588999999976532211 0              11110             011    58899999999999886

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=80.02  E-value=12  Score=37.64  Aligned_cols=66  Identities=15%  Similarity=0.266  Sum_probs=49.3

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      .+++|+...+-++|| +++|..|.-.. + .+......               -.++.|.-+|||-.+-|+|. .|.|..
T Consensus       265 ca~sp~E~kLvlGC~-DgSiiLyD~~~-~-~t~~~ka~---------------~~P~~iaWHp~gai~~V~s~-qGelQ~  325 (545)
T PF11768_consen  265 CARSPSEDKLVLGCE-DGSIILYDTTR-G-VTLLAKAE---------------FIPTLIAWHPDGAIFVVGSE-QGELQC  325 (545)
T ss_pred             EecCcccceEEEEec-CCeEEEEEcCC-C-eeeeeeec---------------ccceEEEEcCCCcEEEEEcC-CceEEE
Confidence            578999999999999 89999987532 1 11111111               22489999999999999984 689999


Q ss_pred             EEecC
Q 027522           85 YNIED   89 (222)
Q Consensus        85 f~i~d   89 (222)
                      ||+.-
T Consensus       326 FD~AL  330 (545)
T PF11768_consen  326 FDMAL  330 (545)
T ss_pred             EEeec
Confidence            99954

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
2ece_A	462	X-Ray Structure Of Hypothetical Selenium-Binding Pr		8e-39

>pdb|2ECE|A Chain A, X-Ray Structure Of Hypothetical Selenium-Binding Protein From Sulfolobus Tokodaii, St0059 Length = 462

Iteration: 1
 Score =  156 bits (395), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 94/231 (40%), Positives = 140/231 (60%), Gaps = 39/231 (16%)
Query: 1   MQIRFLHDPSKDIGFVGCALA----STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEM 56
           +++R LHDP+K +GF+   ++    S+ +     +DG WN E  I + +  ++   LPE+
Sbjct: 254 LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEG-NLPEI 312
Query: 57  -------PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGS 109
                  P L+TD  ISLDD+FLY S W  G++RQY+I +P  PVLTG++ +GG+F    
Sbjct: 313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF---- 368
Query: 110 PVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPE-LK 168
                      +++D P   GH+L G PQM+++S DG+R+YVTNSL+S WD QFYPE LK
Sbjct: 369 -----------HRADHP--AGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLK 415
Query: 169 EKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSD 219
                M++++ N   GG+ I+  FFVDF     G A +H++R  GGD +SD
Sbjct: 416 ---GWMVKLNANPS-GGLEIDKEFFVDF-----GEARSHQVRLSGGDASSD 457

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
2ece_A	462	462AA long hypothetical selenium-binding protein;	1e-77
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	8e-05
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	4e-04
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	9e-04

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Length = 462

 Score =  239 bits (611), Expect = 1e-77
 Identities = 87/231 (37%), Positives = 133/231 (57%), Gaps = 35/231 (15%)

Query: 1   MQIRFLHDPSKDIGFVGCALA----STMVRFSKTQDGSWNHEVAISVKSLKVQNWI---- 52
           +++R LHDP+K +GF+   ++    S+ +     +DG WN E  I + +  ++  +    
Sbjct: 254 LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEIL 313

Query: 53  --LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSP 110
                +P L+TD  ISLDD+FLY S W  G++RQY+I +P  PVLTG++ +GG+F +   
Sbjct: 314 KPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRA-- 371

Query: 111 VVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEK 170
                              GH+L G PQM+++S DG+R+YVTNSL+S WD QFYPE    
Sbjct: 372 ---------------DHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPE--GL 414

Query: 171 GSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIW 221
              M++++ N   GG+ I+  FFVDF     G A +H++R  GGD +SD +
Sbjct: 415 KGWMVKLNAN-PSGGLEIDKEFFVDF-----GEARSHQVRLSGGDASSDSY 459

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 34/151 (22%)

Query: 65  ISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPV-VAVTDDGQPY-- 121
           I+ DD+F      L+      +            I +         V +A++ +G     
Sbjct: 91  ITPDDQFAVTVTGLNHPFNMQSY-SFLKNKFISTIPIPY-----DAVGIAISPNGNGLIL 144

Query: 122 ----------------QSDVPEVQGHRLRGG--PQMIQLSLDGKRLYVTNSL---FSAWD 160
                              + +     + GG  P  I  + DG   +V N +       +
Sbjct: 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILE 204

Query: 161 CQFYPELKEKGSHMLQIDVNSEKGGMAINPN 191
                +  E  + +  +  N+  G + ++ +
Sbjct: 205 ----TQNPENITLLNAVGTNNLPGTIVVSRD 231

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 25/164 (15%), Positives = 43/164 (26%), Gaps = 27/164 (16%)

Query: 39  VAISVKSLKVQNWI-LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIE----DPKNP 93
             I  K+           +P      L+S D + LY + +   +                
Sbjct: 237 SVIDRKTKLEIRKTDKIGLP---RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE 293

Query: 94  VLTGQIWVGGLFRKGSPVVAVTDDGQ------PYQSDVPEVQGHRLR--------GGPQM 139
            L   I   G        +   +            S +        +          P  
Sbjct: 294 KLIDTIGPPG----NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNT 349

Query: 140 IQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEK 183
           I LS DGK LYV+    +     +  +    G  +  ID  ++ 
Sbjct: 350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTTTDT 392

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 31/197 (15%), Positives = 57/197 (28%), Gaps = 49/197 (24%)

Query: 24  MVRFSKTQDGSW-------NHEVA-ISVKSLKVQNWI-LPEMPGLITDFLISLDDRFLYF 74
            +  S   DG         +  V+ I+  +  V N + +   P       ++ D   +Y 
Sbjct: 120 GLALSP--DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP---KGIAVTPDGTKVYV 174

Query: 75  SNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPV-VAVTDDGQP-YQSDVPEVQGH- 131
           +N+    I      D     +   + V       +P  +AV  +G   Y ++V +     
Sbjct: 175 ANFDSMSISVI---DTVTNSVIDTVKVEA-----APSGIAVNPEGTKAYVTNVDKYFNTV 226

Query: 132 --------------RLRGGPQMIQLSLDGKRLYVTNSLF---SAWDCQFYPELKEKGSHM 174
                          +   P  I ++ DGK++YV  S     S  D              
Sbjct: 227 SMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA------ 280

Query: 175 LQIDVNSEKGGMAINPN 191
             + V            
Sbjct: 281 -TMAVGKNPYASGQFIG 296

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
2ece_A	462	462AA long hypothetical selenium-binding protein;	100.0
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.71
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.68
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.58
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.57
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.51
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.47
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.46
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.43
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.43
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.4
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.36
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.34
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.34
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.33
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.33
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.31
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.27
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.27
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.27
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.24
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.22
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.22
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.19
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.18
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.13
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.08
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.07
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.01
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.01
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.01
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.0
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.98
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.97
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.94
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.93
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.92
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.92
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.88
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.86
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.79
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.75
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.67
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.66
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.66
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.61
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.6
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.6
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.58
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.57
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.56
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.56
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.55
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.55
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.53
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.51
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.5
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.48
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.46
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.45
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.45
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.42
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.41
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.4
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.4
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.4
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.37
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.36
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.36
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.36
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.35
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.34
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.33
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.32
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.31
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.3
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.28
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.27
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.27
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.25
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.24
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.23
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.23
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.23
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.21
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.18
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.18
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.18
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.18
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.16
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.16
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.14
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.14
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.13
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.11
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.1
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.09
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.07
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.07
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.07
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.02
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.01
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.99
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.98
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.95
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.95
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.93
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.93
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.93
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.92
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.92
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.91
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.9
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.89
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.88
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.86
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.86
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.86
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.83
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.83
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.82
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.8
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.8
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.78
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.77
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.75
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.75
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.74
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.73
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.73
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.73
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.73
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.72
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.7
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.7
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.69
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.69
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.68
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.68
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.67
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.67
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.67
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.67
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.67
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.65
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.64
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.63
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.62
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.62
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.61
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.6
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.59
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.58
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.57
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.57
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.57
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.56
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.55
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.55
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.55
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.53
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.53
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.51
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.51
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.46
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.46
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.45
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.43
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.43
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.42
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.4
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.39
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.38
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.38
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.37
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.36
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.34
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.33
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.33
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.31
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.31
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.29
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.27
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.27
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.27
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.27
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.26
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.26
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.25
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.25
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.24
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.23
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.23
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.23
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.2
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.19
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.17
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.16
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.15
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.13
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.09
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.07
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.07
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.04
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.04
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.03
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.02
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.01
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.96
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.96
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	96.91
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	96.82
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	96.82
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.8
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.8
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.78
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.78
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.77
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	96.77
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.76
2pm7_B	297	Protein transport protein SEC13, protein transport	96.74
3jro_A	753	Fusion protein of protein transport protein SEC13	96.73
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.72
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.7
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	96.7
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.65
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	96.64
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	96.63
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.61
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	96.52
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.51
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.47
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	96.39
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.33
2pm7_B	297	Protein transport protein SEC13, protein transport	96.3
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	96.25
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.24
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.19
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.18
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.1
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.09
3jro_A	753	Fusion protein of protein transport protein SEC13	95.97
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.97
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	95.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	95.88
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	95.85
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.8
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.79
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	95.74
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	95.67
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.67
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	95.65
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.64
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	95.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	95.62
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.34
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.25
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	95.06
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.01
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	94.88
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	94.63
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	93.81
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	93.44
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	93.06
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	92.75
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.11
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	92.1
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	89.63
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	88.85
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	88.76
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	87.49
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	86.93
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	83.71
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	82.58
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	82.35
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	82.17
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	81.85

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=100.00  E-value=8.7e-62  Score=459.80  Aligned_cols=195  Identities=46%  Similarity=0.876  Sum_probs=177.6

Q ss_pred             CeEeEEEcCCCCeEEEEec-----cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCC-------CceeEEEEcCC
Q 027522            1 MQIRFLHDPSKDIGFVGCA-----LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMP-------GLITDFLISLD   68 (222)
Q Consensus         1 levr~afhP~g~~aYvv~E-----LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~-------~~~adI~iSpD   68 (222)
                      +||||+|||+++++||+||     |+++|++|+++. |+|+++|+|++++.++.+ .+++|+       +.+++|+||||
T Consensus       254 ~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~-~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          254 LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEG-NLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCS-SCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccc-cccccccccccCCCceeEEEECCC
Confidence            4899999999999999999     999999999975 999999999988766654 344443       67899999999


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCE
Q 027522           69 DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKR  148 (222)
Q Consensus        69 grfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~  148 (222)
                      |||||||||+||+|+||+|+++++++++++|++||.+.               +|+.+  +|+++.|+||+|+|||||||
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~---------------~~~~~--~G~~~~ggPr~~~lSpDGk~  394 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFH---------------RADHP--AGHKLTGAPQMLEISRDGRR  394 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTT---------------CBCCT--TSCCCCSCCCCEEECTTSSE
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeec---------------ccccc--ccccCCCCCCEEEEcCCCCE
Confidence            99999999999999999998888999999999999763               33322  68889999999999999999


Q ss_pred             EEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCCCcCccccC
Q 027522          149 LYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI  222 (222)
Q Consensus       149 LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~gd~~sd~~~  222 (222)
                      |||||+|||+||+||||+  +++++|+++|+|+++| |+++++|+|||++     +|||||||||||||||||+
T Consensus       395 LyVaNsl~~~wd~Qfyp~--~~~~~~~~~~vd~~~G-L~~~~~f~vdf~~-----~~~h~~r~~ggd~~sd~~~  460 (462)
T 2ece_A          395 VYVTNSLYSTWDNQFYPE--GLKGWMVKLNANPSGG-LEIDKEFFVDFGE-----ARSHQVRLSGGDASSDSYC  460 (462)
T ss_dssp             EEEECCCCHHHHHHHSTT--CCCCEEEEEEECTTSC-EEEEEEEEEECTT-----SEEEEEEETTCCTTTCCCS
T ss_pred             EEEEcCCcccccccccCC--CCceEEEEEEecCCCC-ceeCCCEEeeccc-----CcceeeecCCCCcCccccc
Confidence            999999999999999999  7899999999999999 9999999999988     7999999999999999996

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=3.4e-18  Score=146.67  Aligned_cols=128  Identities=16%  Similarity=0.292  Sum_probs=99.2

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC-CCcE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL-HGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg-h~sI   82 (222)
                      .++|+|+|+++|+.++.+++|.+|..+ +|++...+.+...+...         ..+++|.+|||||+||+++++ ++.|
T Consensus       215 ~~~~spdg~~l~v~~~~~~~v~v~~~~-~g~~~~~~~~~~~~~~~---------~~~~~i~~spdg~~l~v~~~~~~~~i  284 (361)
T 3scy_A          215 HLIFNSDGKFAYLINEIGGTVIAFRYA-DGMLDEIQTVAADTVNA---------QGSGDIHLSPDGKYLYASNRLKADGV  284 (361)
T ss_dssp             EEEECTTSSEEEEEETTTCEEEEEEEE-TTEEEEEEEEESCSSCC---------CCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred             EEEEcCCCCEEEEEcCCCCeEEEEEec-CCceEEeEEEecCCCCC---------CCcccEEECCCCCEEEEECCCCCCEE
Confidence            378999999999999999999999886 67777777666655432         335899999999999999999 9999


Q ss_pred             EEEEecC-CCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522           83 RQYNIED-PKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC  161 (222)
Q Consensus        83 ~vf~i~d-~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~  161 (222)
                      .+|+++. .++.+++..+..                            |..    |+.|++||||++||++|        
T Consensus       285 ~v~~~~~~~g~~~~~~~~~~----------------------------g~~----~~~~~~spdg~~l~~~~--------  324 (361)
T 3scy_A          285 AIFKVDETNGTLTKVGYQLT----------------------------GIH----PRNFIITPNGKYLLVAC--------  324 (361)
T ss_dssp             EEEEECTTTCCEEEEEEEEC----------------------------SSC----CCEEEECTTSCEEEEEE--------
T ss_pred             EEEEEcCCCCcEEEeeEecC----------------------------CCC----CceEEECCCCCEEEEEE--------
Confidence            9999952 223334444433                            334    99999999999999999        


Q ss_pred             ccccccccCCcEEEEEEeeCCCCCeee
Q 027522          162 QFYPELKEKGSHMLQIDVNSEKGGMAI  188 (222)
Q Consensus       162 Q~yp~~~s~~~~i~~~dvd~~~G~l~~  188 (222)
                      +.       +..+..+++|.++|.++.
T Consensus       325 ~~-------~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          325 RD-------TNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             TT-------TTEEEEEEECTTTCCEEE
T ss_pred             CC-------CCCEEEEEEECCCCcEee
Confidence            53       445555556889999963

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.80  E-value=3.4e-18  Score=145.49  Aligned_cols=132  Identities=17%  Similarity=0.226  Sum_probs=104.0

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      .++|+|+|+++|+.++.+++|.+|..+. +|++...+.+...+..+.+.      +.+.+|.+|||||+|||++++.+.|
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~i~~spdG~~l~v~~~~~~~v  264 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH------NGAAAIRLSHDGHFLYVSNRGYNTL  264 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC------CEEEEEEECTTSCEEEEEEETTTEE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC------CcceeEEECCCCCEEEEEeCCCCEE
Confidence            3699999999999999999999998863 67887777777666544332      4578999999999999999999999


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ  162 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q  162 (222)
                      .+|+++..+..+++..+..+                           |..    |+.+++||||++|||+|        +
T Consensus       265 ~v~~~~~~g~~~~~~~~~~~---------------------------~~~----~~~~~~spdg~~l~v~~--------~  305 (347)
T 3hfq_A          265 AVFAVTADGHLTLIQQISTE---------------------------GDF----PRDFDLDPTEAFVVVVN--------Q  305 (347)
T ss_dssp             EEEEECGGGCEEEEEEEECS---------------------------SSC----CCEEEECTTSSEEEEEE--------T
T ss_pred             EEEEECCCCcEEEeEEEecC---------------------------CCC----cCeEEECCCCCEEEEEE--------c
Confidence            99999543344554444432                           344    99999999999999999        4


Q ss_pred             cccccccCCcEEEEEEeeCCCCCee
Q 027522          163 FYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       163 ~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                             ++..+..+++|+++|.++
T Consensus       306 -------~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          306 -------NTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             -------TTTEEEEEEECTTTCCEE
T ss_pred             -------CCCcEEEEEEeCCCCeEE
Confidence                   345555566688999986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.71  E-value=4.5e-16  Score=135.61  Aligned_cols=116  Identities=8%  Similarity=0.063  Sum_probs=84.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeC-CCCCeeE-EEEEEecCcccccccCC-CCCCceeEEE-EcCCCCEEEEEeCCCC
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNH-EVAISVKSLKVQNWILP-EMPGLITDFL-ISLDDRFLYFSNWLHG   80 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d-~~g~~~~-~q~is~~p~~~~g~~~~-~~~~~~adI~-iSpDgrfLYvSnRgh~   80 (222)
                      ++|+|+|+++|+.+|++++|.+|.++ ++|++.. .+.+.+.|..+.+...+ .....+.+|. +|||||+||++||+++
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~  277 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence            68999999999999999999999886 3577765 45566665544332000 0000478999 9999999999999987


Q ss_pred             -----cEEEEEecCCCCCeEEEE---EEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECC---CCCEE
Q 027522           81 -----DIRQYNIEDPKNPVLTGQ---IWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSL---DGKRL  149 (222)
Q Consensus        81 -----sI~vf~i~d~~~~~L~~~---v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lsp---dGk~L  149 (222)
                           +|++|+++.  .+++...   +..                           .+.    +|+.+++||   ||++|
T Consensus       278 ~~~~~~i~v~~~~~--~g~~~~~~~~~~~---------------------------~~~----~~~~~a~sp~~~dg~~l  324 (365)
T 1jof_A          278 FELQGYIAGFKLRD--CGSIEKQLFLSPT---------------------------PTS----GGHSNAVSPCPWSDEWM  324 (365)
T ss_dssp             TTSCCEEEEEEECT--TSCEEEEEEEEEC---------------------------SSC----CTTCCCEEECTTCTTEE
T ss_pred             CCCCCeEEEEEECC--CCCEEEeeeeeec---------------------------CCC----CcccceecCCCcCCCEE
Confidence                 899999953  3444221   211                           122    388999999   89999


Q ss_pred             EEEe
Q 027522          150 YVTN  153 (222)
Q Consensus       150 yvaN  153 (222)
                      ||+|
T Consensus       325 ~v~~  328 (365)
T 1jof_A          325 AITD  328 (365)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            9999

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.68  E-value=5.7e-15  Score=122.54  Aligned_cols=135  Identities=16%  Similarity=0.227  Sum_probs=103.0

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeC-CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d-~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ++|+|+++++|+.++.+++|.+|..+ .+|++...+.+...+..+.+.      ..+..|.+||||++||++++..+.|.
T Consensus       183 ~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~i~~s~dg~~l~v~~~~~~~i~  256 (343)
T 1ri6_A          183 MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT------RWAADIHITPDGRHLYACDRTASLIT  256 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC------CCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc------CCccceEECCCCCEEEEEecCCCEEE
Confidence            78999999999999999999999886 467787777776555544332      45689999999999999999999999


Q ss_pred             EEEecC-CCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522           84 QYNIED-PKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ  162 (222)
Q Consensus        84 vf~i~d-~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q  162 (222)
                      +|+++. .++.+.+..+..                            +..    |+.++++|||++||+++        +
T Consensus       257 v~d~~~~~~~~~~~~~~~~----------------------------~~~----~~~~~~s~dg~~l~~~~--------~  296 (343)
T 1ri6_A          257 VFSVSEDGSVLSKEGFQPT----------------------------ETQ----PRGFNVDHSGKYLIAAG--------Q  296 (343)
T ss_dssp             EEEECTTSCCEEEEEEEEC----------------------------SSS----CCCEEECTTSSEEEEEC--------T
T ss_pred             EEEEcCCCCceEEeeeecC----------------------------CCc----cceEEECCCCCEEEEec--------C
Confidence            999953 223344444433                            222    88999999999999999        3


Q ss_pred             cccccccCCcEEEEEEeeCCCCCeeeccce
Q 027522          163 FYPELKEKGSHMLQIDVNSEKGGMAINPNF  192 (222)
Q Consensus       163 ~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f  192 (222)
                             ++..+..+++|+++|.++.-..+
T Consensus       297 -------~~~~v~v~~~d~~~g~~~~~~~~  319 (343)
T 1ri6_A          297 -------KSHHISVYEIVGEQGLLHEKGRY  319 (343)
T ss_dssp             -------TTCEEEEEEEETTTTEEEEEEEE
T ss_pred             -------CCCeEEEEEEcCCCceeeEcccc
Confidence                   34566666778899988644433

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.58  E-value=5e-13  Score=113.53  Aligned_cols=135  Identities=14%  Similarity=0.179  Sum_probs=94.9

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+|+++|+.+.-+.+|.+|..+.+|++.....+..........   .....+..+.+||||+ ||+++.+.+.|.+
T Consensus        91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~spdg~-l~v~~~~~~~v~~  166 (347)
T 3hfq_A           91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPE---QDGSHIHYTDLTPDNR-LAVIDLGSDKVYV  166 (347)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTT---CSSCCEEEEEECTTSC-EEEEETTTTEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcc---ccCCCceEEEECCCCc-EEEEeCCCCEEEE
Confidence            68999999999999989999999987677776665544321110000   0013467899999999 9999999999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY  164 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y  164 (222)
                      |+++..+..+.+..+..                          ..|..    |+.+++||||++||+++           
T Consensus       167 ~~~~~~g~~~~~~~~~~--------------------------~~g~~----p~~~~~spdg~~l~v~~-----------  205 (347)
T 3hfq_A          167 YNVSDAGQLSEQSVLTM--------------------------EAGFG----PRHLVFSPDGQYAFLAG-----------  205 (347)
T ss_dssp             EEECTTSCEEEEEEEEC--------------------------CTTCC----EEEEEECTTSSEEEEEE-----------
T ss_pred             EEECCCCcEEEeeeEEc--------------------------CCCCC----CceEEECCCCCEEEEEe-----------
Confidence            99963222222222111                          01333    99999999999999998           


Q ss_pred             cccccCCcEEEEEEeeCCCCCeee
Q 027522          165 PELKEKGSHMLQIDVNSEKGGMAI  188 (222)
Q Consensus       165 p~~~s~~~~i~~~dvd~~~G~l~~  188 (222)
                          +.+..+..++++..+|.++.
T Consensus       206 ----~~~~~v~v~~~~~~~g~~~~  225 (347)
T 3hfq_A          206 ----ELSSQIASLKYDTQTGAFTQ  225 (347)
T ss_dssp             ----TTTTEEEEEEEETTTTEEEE
T ss_pred             ----CCCCEEEEEEecCCCCceEE
Confidence                24556666777877887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.57  E-value=2.5e-13  Score=116.29  Aligned_cols=133  Identities=17%  Similarity=0.223  Sum_probs=95.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCC-----C-eeEE---EEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDG-----S-WNHE---VAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS   75 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g-----~-~~~~---q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvS   75 (222)
                      ++|+|+|+++|+.+.-+.+|.+|..+..+     + +...   ..+.+.+    +       ..+..+.+||||++||++
T Consensus       160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~-------~~~~~~~~spdg~~l~v~  228 (361)
T 3scy_A          160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP----G-------SGPRHLIFNSDGKFAYLI  228 (361)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT----T-------CCEEEEEECTTSSEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC----C-------CCCeEEEEcCCCCEEEEE
Confidence            78999999999999889999999886443     3 5444   2333321    1       345789999999999999


Q ss_pred             eCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCC
Q 027522           76 NWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSL  155 (222)
Q Consensus        76 nRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl  155 (222)
                      +...+.|.+|+++. +..+.+..+...                    |    ..+.    +|+.+++||||++|||+|  
T Consensus       229 ~~~~~~v~v~~~~~-g~~~~~~~~~~~--------------------~----~~~~----~~~~i~~spdg~~l~v~~--  277 (361)
T 3scy_A          229 NEIGGTVIAFRYAD-GMLDEIQTVAAD--------------------T----VNAQ----GSGDIHLSPDGKYLYASN--  277 (361)
T ss_dssp             ETTTCEEEEEEEET-TEEEEEEEEESC--------------------S----SCCC----CEEEEEECTTSSEEEEEE--
T ss_pred             cCCCCeEEEEEecC-CceEEeEEEecC--------------------C----CCCC----CcccEEECCCCCEEEEEC--
Confidence            99999999999963 222223333221                    0    0122    389999999999999999  


Q ss_pred             CCccccccccccccC-CcEEEEEEeeCCCCCeeeccce
Q 027522          156 FSAWDCQFYPELKEK-GSHMLQIDVNSEKGGMAINPNF  192 (222)
Q Consensus       156 ~~~wd~Q~yp~~~s~-~~~i~~~dvd~~~G~l~~~~~f  192 (222)
                                   .. ...+..+++|+.+|.++....+
T Consensus       278 -------------~~~~~~i~v~~~~~~~g~~~~~~~~  302 (361)
T 3scy_A          278 -------------RLKADGVAIFKVDETNGTLTKVGYQ  302 (361)
T ss_dssp             -------------CSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred             -------------CCCCCEEEEEEEcCCCCcEEEeeEe
Confidence                         23 5667777888889987644433

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.51  E-value=1.5e-12  Score=109.07  Aligned_cols=127  Identities=17%  Similarity=0.215  Sum_probs=90.9

Q ss_pred             eEEEcCCCCeEEEEeccCce-EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALAST-MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsst-V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      -++|+|+|+++|+.+.-+.+ |.+|..+.+|.+.... ....+.   +       ..+..+.+||||++||++++..+.|
T Consensus       132 ~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~~~~---~-------~~~~~~~~spdg~~l~v~~~~~~~v  200 (331)
T 3u4y_A          132 GIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QEFISG---G-------TRPFNITFTPDGNFAFVANLIGNSI  200 (331)
T ss_dssp             EEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EEEECS---S-------SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             ceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-CccccC---C-------CCccceEECCCCCEEEEEeCCCCeE
Confidence            47899999999999988788 9999887666654333 222211   1       3468999999999999999999999


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ  162 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q  162 (222)
                      .+|++......+.+..+..                            +..    |+.+++||||++||+++        +
T Consensus       201 ~v~d~~~~~~~~~~~~~~~----------------------------~~~----~~~~~~spdg~~l~v~~--------~  240 (331)
T 3u4y_A          201 GILETQNPENITLLNAVGT----------------------------NNL----PGTIVVSRDGSTVYVLT--------E  240 (331)
T ss_dssp             EEEECSSTTSCEEEEEEEC----------------------------SSC----CCCEEECTTSSEEEEEC--------S
T ss_pred             EEEECCCCcccceeeeccC----------------------------CCC----CceEEECCCCCEEEEEE--------c
Confidence            9999854211122444443                            223    99999999999999999        3


Q ss_pred             cccccccCCcEEEEEEeeCCCCCeeecc
Q 027522          163 FYPELKEKGSHMLQIDVNSEKGGMAINP  190 (222)
Q Consensus       163 ~yp~~~s~~~~i~~~dvd~~~G~l~~~~  190 (222)
                             ....|..+  |..+|.++.-.
T Consensus       241 -------~~~~i~~~--d~~~~~~~~~~  259 (331)
T 3u4y_A          241 -------STVDVFNF--NQLSGTLSFVK  259 (331)
T ss_dssp             -------SEEEEEEE--ETTTTEEEEEE
T ss_pred             -------CCCEEEEE--ECCCCceeeec
Confidence                   34455555  55788874333

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.47  E-value=4.7e-12  Score=110.13  Aligned_cols=120  Identities=14%  Similarity=0.155  Sum_probs=80.2

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+|+++|+.+.-+.+|.+|..+.+|++.....+.++..   +       ..+..|.+|||||+||+++...+.|.+
T Consensus       150 ~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~---g-------~~p~~~~~spdg~~l~v~~~~~~~v~v  219 (365)
T 1jof_A          150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP---G-------DHPRWVAMHPTGNYLYALMEAGNRICE  219 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST---T-------CCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC---C-------CCCCEeEECCCCCEEEEEECCCCeEEE
Confidence            579999999999987788999998854577655444433210   1       346899999999999999998899999


Q ss_pred             EEecCCCCCeEEE---EEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEE-ECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTG---QIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQ-LSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~---~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~-lspdGk~LyvaN  153 (222)
                      |+++ ..++++..   .+.+.   +.          +...+.. +...+..    |..++ +||||++||++|
T Consensus       220 ~~~~-~~~g~~~~~~~~~~~~---~~----------~~~g~~~-~~~~~~~----~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          220 YVID-PATHMPVYTHHSFPLI---PP----------GIPDRDP-ETGKGLY----RADVCALTFSGKYMFASS  273 (365)
T ss_dssp             EEEC-TTTCCEEEEEEEEESS---CT----------TCCCBCT-TTSSBSE----EEEEEEECTTSSEEEEEE
T ss_pred             EEEe-CCCCcEEEccceEEcC---CC----------CcCCccc-ccccccc----cccEEEECCCCCEEEEEC
Confidence            9994 34455532   22220   00          0000000 0000113    88999 999999999999

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.46  E-value=1.2e-12  Score=117.77  Aligned_cols=104  Identities=9%  Similarity=-0.068  Sum_probs=73.1

Q ss_pred             EEcCCCCeEEEEec-cCc---eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC----
Q 027522            6 LHDPSKDIGFVGCA-LAS---TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW----   77 (222)
Q Consensus         6 afhP~g~~aYvv~E-Lss---tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR----   77 (222)
                      +..|+++++||.++ -.+   +|+++..+ +++  ....  ++.    |       ..+ .|.+|||||+|||+|.    
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~-t~~--~~~~--i~~----g-------~~p-~i~~spDg~~lyv~n~~~~~   89 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAG-SGS--ILGH--VNG----G-------FLP-NPVAAHSGSEFALASTSFSR   89 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECC-CCe--EEEE--ecC----C-------CCC-CeEECCCCCEEEEEeccccc
Confidence            34589999999997 333   77887663 333  3333  321    1       124 9999999999999984    


Q ss_pred             ---C--CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE
Q 027522           78 ---L--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT  152 (222)
Q Consensus        78 ---g--h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva  152 (222)
                         |  .+.|.+|+..   ++++++++.++|.-                    ....|..    |++|++|||||+|||+
T Consensus        90 ~~rg~~~~~v~viD~~---t~~~~~~i~~~~~~--------------------~~~~g~~----p~~~~~spDG~~l~v~  142 (373)
T 2mad_H           90 IAKGKRTDYVEVFDPV---TFLPIADIELPDAP--------------------RFDVGPY----SWMNANTPNNADLLFF  142 (373)
T ss_pred             cccCCCCCeEEEEECC---CCcEEEEEECCCcc--------------------ccccCCC----ccceEECCCCCEEEEE
Confidence               3  5789999763   57788888875310                    0001344    9999999999999999


Q ss_pred             e
Q 027522          153 N  153 (222)
Q Consensus       153 N  153 (222)
                      |
T Consensus       143 n  143 (373)
T 2mad_H          143 Q  143 (373)
T ss_pred             e
Confidence            9

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.43  E-value=1.5e-12  Score=120.29  Aligned_cols=104  Identities=15%  Similarity=0.080  Sum_probs=77.3

Q ss_pred             EEcCCCCeEEEEecc----CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC----
Q 027522            6 LHDPSKDIGFVGCAL----ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW----   77 (222)
Q Consensus         6 afhP~g~~aYvv~EL----sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR----   77 (222)
                      +..|+++++||.++-    +++|+++.-+   +++....|.+.             ..+. |.+|||||+|||+|+    
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~---t~~v~~~I~vG-------------~~P~-va~spDG~~lyVan~~~~r  101 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGE---AGRVIGMIDGG-------------FLPN-PVVADDGSFIAHASTVFSR  101 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETT---TTEEEEEEEEC-------------SSCE-EEECTTSSCEEEEEEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECC---CCeEEEEEECC-------------CCCc-EEECCCCCEEEEEcccccc
Confidence            567999999999996    7899999653   44555666542             1234 999999999999994    


Q ss_pred             ---C--CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE
Q 027522           78 ---L--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT  152 (222)
Q Consensus        78 ---g--h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva  152 (222)
                         |  .+.|.+||.   .+.+.+++|.+++-- +                   .--|.+    |++|++|||||+|||+
T Consensus       102 ~~~G~~~~~VsviD~---~t~~v~~~I~v~~g~-r-------------------~~~g~~----P~~~a~spDGk~lyVa  154 (386)
T 3sjl_D          102 IARGERTDYVEVFDP---VTLLPTADIELPDAP-R-------------------FLVGTY----PWMTSLTPDGKTLLFY  154 (386)
T ss_dssp             TTEEEEEEEEEEECT---TTCCEEEEEEETTCC-C-------------------CCBSCC----GGGEEECTTSSEEEEE
T ss_pred             cccCCCCCEEEEEEC---CCCeEEEEEECCCcc-c-------------------cccCCC----CceEEEcCCCCEEEEE
Confidence               3  467888854   568888998885300 0                   001445    9999999999999999


Q ss_pred             e
Q 027522          153 N  153 (222)
Q Consensus       153 N  153 (222)
                      |
T Consensus       155 n  155 (386)
T 3sjl_D          155 Q  155 (386)
T ss_dssp             E
T ss_pred             E
Confidence            9

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.43  E-value=4.1e-12  Score=119.29  Aligned_cols=129  Identities=9%  Similarity=0.048  Sum_probs=92.9

Q ss_pred             EEEcC----CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            5 FLHDP----SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         5 ~afhP----~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      ++|||    +|+++||.|+++++|.++..   .+++..+++++....+.+.... ..+.++.|.+|||++++|||++..+
T Consensus       227 va~sp~~~~dg~~l~v~~~~~~~v~v~D~---~t~~~~~~i~~~g~~~~~~~~~-~~~~v~~i~~s~~~~~~~vs~~~~g  302 (543)
T 1nir_A          227 VESSKFKGYEDRYTIAGAYWPPQFAIMDG---ETLEPKQIVSTRGMTVDTQTYH-PEPRVAAIIASHEHPEFIVNVKETG  302 (543)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEET---TTCCEEEEEECCEECSSSCCEE-SCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             EEeCCCcCCCCCEEEEEEccCCeEEEEec---cccccceeecccCcccCccccc-cCCceEEEEECCCCCEEEEEECCCC
Confidence            68999    99999999999999999964   2456677777643221110000 0135789999999999999999999


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccc
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWD  160 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd  160 (222)
                      .|++|++.+....+ +..+..                            |+.    |+.+++||||++|||||       
T Consensus       303 ~i~vvd~~~~~~l~-~~~i~~----------------------------~~~----~~~~~~spdg~~l~va~-------  342 (543)
T 1nir_A          303 KVLLVNYKDIDNLT-VTSIGA----------------------------APF----LHDGGWDSSHRYFMTAA-------  342 (543)
T ss_dssp             EEEEEECTTSSSCE-EEEEEC----------------------------CSS----CCCEEECTTSCEEEEEE-------
T ss_pred             eEEEEEecCCCcce-eEEecc----------------------------CcC----ccCceECCCCCEEEEEe-------
Confidence            99999996533333 223332                            445    99999999999999999       


Q ss_pred             cccccccccCCcEEEEEEeeCCCCCee
Q 027522          161 CQFYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       161 ~Q~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                       +       .+.+|..+  |..+|++.
T Consensus       343 -~-------~~~~v~v~--D~~tg~l~  359 (543)
T 1nir_A          343 -N-------NSNKVAVI--DSKDRRLS  359 (543)
T ss_dssp             -G-------GGTEEEEE--ETTTTEEE
T ss_pred             -c-------CCCeEEEE--ECCCCeEE
Confidence             4       24445545  66788763

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.40  E-value=1.6e-12  Score=114.98  Aligned_cols=115  Identities=13%  Similarity=0.122  Sum_probs=85.1

Q ss_pred             EEEcCCCCeEEEEecc---------CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEE
Q 027522            5 FLHDPSKDIGFVGCAL---------ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS   75 (222)
Q Consensus         5 ~afhP~g~~aYvv~EL---------sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvS   75 (222)
                      ++|||+|+++||.||+         +++|.+|..   .+++..+.+.+++..+.+.      ..+..|.+|||||+|||+
T Consensus        55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~---~t~~~~~~i~~~~~~~~~g------~~p~~i~~spdg~~l~v~  125 (361)
T 2oiz_A           55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA---DKLTFEKEISLPPKRVQGL------NYDGLFRQTTDGKFIVLQ  125 (361)
T ss_dssp             EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET---TTCCEEEEEEECTTBCCBC------CCGGGEEECTTSSEEEEE
T ss_pred             eEECCCCCEEEEEEecccccccCCCCCEEEEEEC---cCCcEEEEEEcCccccccC------CCcceEEECCCCCEEEEE
Confidence            6899999999999974         567888853   3567778888776544322      456899999999999999


Q ss_pred             eCC-CCcEEEEEecCCCCCeEEEE-EEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           76 NWL-HGDIRQYNIEDPKNPVLTGQ-IWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        76 nRg-h~sI~vf~i~d~~~~~L~~~-v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++ .++|++|++.   +.+++.. +.++|..+    |.                  ....|.++.+++++||+.+++++
T Consensus       126 n~~~~~~v~v~d~~---~~~~~~~~i~~~~~~~----v~------------------~~p~~~~~~~~~~~dg~~~~v~~  180 (361)
T 2oiz_A          126 NASPATSIGIVDVA---KGDYVEDVTAAAGCWS----VI------------------PQPNRPRSFMTICGDGGLLTINL  180 (361)
T ss_dssp             EESSSEEEEEEETT---TTEEEEEEGGGTTEEE----EE------------------ECTTSSSEEEEEETTSSEEEEEE
T ss_pred             CCCCCCeEEEEECC---CCcEEEEEecCCCcce----eE------------------EcCCCCeeEEEECCCCcEEEEEE
Confidence            997 6899999884   3577777 66655311    00                  00111267899999999999987

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.36  E-value=2.7e-11  Score=100.31  Aligned_cols=124  Identities=18%  Similarity=0.201  Sum_probs=87.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCC-eeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGS-WNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~-~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ++|+|+|+++|+.+.-+++|.+|..+ +|. .+..+.+..       .      ..+..|.+||||++||+++.+.+.|.
T Consensus        89 ~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~-------~------~~~~~~~~s~dg~~l~~~~~~~~~v~  154 (343)
T 1ri6_A           89 ISTDHQGQFVFVGSYNAGNVSVTRLE-DGLPVGVVDVVEG-------L------DGCHSANISPDNRTLWVPALKQDRIC  154 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEE-TTEEEEEEEEECC-------C------TTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEECC-CCccccccccccC-------C------CCceEEEECCCCCEEEEecCCCCEEE
Confidence            67999999999999989999999775 442 222222211       1      23578999999999999998899999


Q ss_pred             EEEecCCCCCeEEE--EEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522           84 QYNIEDPKNPVLTG--QIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC  161 (222)
Q Consensus        84 vf~i~d~~~~~L~~--~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~  161 (222)
                      +|++...++...+.  .+..                          ..|..    |+.++++|||++||+++        
T Consensus       155 ~~d~~~~~~~~~~~~~~~~~--------------------------~~~~~----~~~~~~~pdg~~l~~~~--------  196 (343)
T 1ri6_A          155 LFTVSDDGHLVAQDPAEVTT--------------------------VEGAG----PRHMVFHPNEQYAYCVN--------  196 (343)
T ss_dssp             EEEECTTSCEEEEEEEEEEC--------------------------STTCC----EEEEEECTTSSEEEEEE--------
T ss_pred             EEEecCCCceeeeccccccc--------------------------CCCCC----cceEEECCCCCEEEEEe--------
Confidence            99995423222211  1111                          01333    99999999999999998        


Q ss_pred             ccccccccCCcEEEEEEeeCCCCCee
Q 027522          162 QFYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       162 Q~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                      +       .+..+..+|++..+|.++
T Consensus       197 ~-------~~~~i~~~~~~~~~g~~~  215 (343)
T 1ri6_A          197 E-------LNSSVDVWELKDPHGNIE  215 (343)
T ss_dssp             T-------TTTEEEEEESSCTTSCCE
T ss_pred             C-------CCCEEEEEEecCCCCcEE
Confidence            2       355677777776777664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.34  E-value=1e-11  Score=115.59  Aligned_cols=119  Identities=12%  Similarity=0.021  Sum_probs=85.7

Q ss_pred             cCCCCeEEEEeccC----ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC------
Q 027522            8 DPSKDIGFVGCALA----STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW------   77 (222)
Q Consensus         8 hP~g~~aYvv~ELs----stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR------   77 (222)
                      .|+++++||.|+-+    ++|.++.-+   +++....|.+.             ..+ .|.+|||||+|||+|.      
T Consensus        81 ~~~~~~vyV~n~~~~~~~~~VsVID~~---t~~vv~~I~vG-------------~~P-gia~SpDgk~lyVan~~~~~~~  143 (426)
T 3c75_H           81 APDARRVYIQDPAHFAAITQQFVIDGS---TGRILGMTDGG-------------FLP-HPVAAEDGSFFAQASTVFERIA  143 (426)
T ss_dssp             CCCTTEEEEEECTTTCSSEEEEEEETT---TTEEEEEEEEC-------------SSC-EEEECTTSSCEEEEEEEEEETT
T ss_pred             CCCCCEEEEECCCcCCCCCeEEEEECC---CCEEEEEEECC-------------CCC-ceEECCCCCEEEEEeccccccc
Confidence            47889999999966    789999753   44556666553             234 8999999999999995      


Q ss_pred             ---CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           78 ---LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        78 ---gh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                         ..+.|.+||   ..+.+++++|.++|.-.                    ...|..    |++|++|||||+|||+| 
T Consensus       144 ~G~~~~~VsviD---~~t~~vv~~I~v~g~~r--------------------~~~g~~----P~~~~~spDGk~lyV~n-  195 (426)
T 3c75_H          144 RGKRTDYVEVFD---PVTFLPIADIELPDAPR--------------------FLVGTY----QWMNALTPDNKNLLFYQ-  195 (426)
T ss_dssp             EEEEEEEEEEEC---TTTCCEEEEEEETTCCC--------------------CCBSCC----GGGSEECTTSSEEEEEE-
T ss_pred             cCCCCCEEEEEE---CCCCcEEEEEECCCccc--------------------cccCCC----cceEEEcCCCCEEEEEe-
Confidence               356788884   45688889998853100                    001334    99999999999999999 


Q ss_pred             CCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522          155 LFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       155 l~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l  186 (222)
                             .      ..+.+|..+  |+.++++
T Consensus       196 -------~------~~~~~VsVI--D~~t~kv  212 (426)
T 3c75_H          196 -------F------SPAPAVGVV--DLEGKTF  212 (426)
T ss_dssp             -------C------SSSCEEEEE--ETTTTEE
T ss_pred             -------c------CCCCeEEEE--ECCCCeE
Confidence                   2      134566666  4466654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.34  E-value=9.6e-12  Score=109.90  Aligned_cols=100  Identities=12%  Similarity=0.092  Sum_probs=71.7

Q ss_pred             CCCCeEEEEecc-----CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC------
Q 027522            9 PSKDIGFVGCAL-----ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW------   77 (222)
Q Consensus         9 P~g~~aYvv~EL-----sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR------   77 (222)
                      |+++++||.++-     +++|.++.. ++++.  ...+..      |       ..+ .|.+|||||+|||+|.      
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~-~t~~~--~~~i~~------g-------~~p-~i~~spdg~~lyv~~~~~~~~~   75 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDY-TNGKF--LGMVPT------A-------FNG-HVQVSNDGKKIYTMTTYHERIT   75 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEET-TTCCE--EEEEEC------C-------EEE-EEEECTTSSEEEEEEEEETTSS
T ss_pred             CCCCEEEEECCCCCccccCeEEEEEC-CCCeE--EEEecC------C-------CCC-ceEECCCCCEEEEEEecccccc
Confidence            578999999974     457888854 34543  333322      1       234 8999999999999984      


Q ss_pred             -C--CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           78 -L--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        78 -g--h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                       |  .+.|.+|++   .++++++++.+++.                     ....|..    |+.|++|||||+|||+|
T Consensus        76 ~g~~~~~v~v~d~---~t~~~~~~i~~~~~---------------------~~~~g~~----p~~i~~spdg~~l~v~n  126 (361)
T 2oiz_A           76 RGKRSDVVEVWDA---DKLTFEKEISLPPK---------------------RVQGLNY----DGLFRQTTDGKFIVLQN  126 (361)
T ss_dssp             SSCEEEEEEEEET---TTCCEEEEEEECTT---------------------BCCBCCC----GGGEEECTTSSEEEEEE
T ss_pred             cCCCCCEEEEEEC---cCCcEEEEEEcCcc---------------------ccccCCC----cceEEECCCCCEEEEEC
Confidence             3  456999976   35778888887421                     0012455    99999999999999999

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.33  E-value=6.1e-11  Score=99.19  Aligned_cols=98  Identities=16%  Similarity=0.223  Sum_probs=77.7

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+|+++|+.++-+++|.+|... +++  ..+.+.+.      .        +..+.+||||++||++++..+.|.+
T Consensus       236 ~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~--~~~~~~~~------~--------~~~~~~s~dg~~l~v~~~~~~~v~~  298 (353)
T 3vgz_A          236 ISLDTARQRAFITDSKAAEVLVVDTR-NGN--ILAKVAAP------E--------SLAVLFNPARNEAYVTHRQAGKVSV  298 (353)
T ss_dssp             EEEETTTTEEEEEESSSSEEEEEETT-TCC--EEEEEECS------S--------CCCEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEECC-CCc--EEEEEEcC------C--------CceEEECCCCCEEEEEECCCCeEEE
Confidence            78999999999999999999999763 343  33444432      1        2468999999999999999999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                      |++.   +++++..+..+                            ..    |+.++++|||++|||+|.
T Consensus       299 ~d~~---~~~~~~~~~~~----------------------------~~----~~~~~~s~dg~~l~v~~~  333 (353)
T 3vgz_A          299 IDAK---SYKVVKTFDTP----------------------------TH----PNSLALSADGKTLYVSVK  333 (353)
T ss_dssp             EETT---TTEEEEEEECC----------------------------SE----EEEEEECTTSCEEEEEEE
T ss_pred             EECC---CCeEEEEEecC----------------------------CC----CCeEEEcCCCCEEEEEEc
Confidence            9874   36776666552                            23    899999999999999994

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.33  E-value=2.8e-11  Score=101.26  Aligned_cols=123  Identities=13%  Similarity=0.177  Sum_probs=83.5

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCe-eEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSW-NHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~-~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      .++|+|+|+++|+.++.+++|.+|..+ +++. +..+.+..      +       ..+..|.+||||++||+++++.+.|
T Consensus       180 ~~~~spdg~~l~v~~~~~~~v~v~d~~-~~~~~~~~~~~~~------~-------~~~~~~~~spdg~~l~v~~~~~~~i  245 (331)
T 3u4y_A          180 NITFTPDGNFAFVANLIGNSIGILETQ-NPENITLLNAVGT------N-------NLPGTIVVSRDGSTVYVLTESTVDV  245 (331)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEECS-STTSCEEEEEEEC------S-------SCCCCEEECTTSSEEEEECSSEEEE
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECC-CCcccceeeeccC------C-------CCCceEEECCCCCEEEEEEcCCCEE
Confidence            478999999999999999999999874 3444 21222221      1       3347899999999999999999999


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ  162 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q  162 (222)
                      .+|++.. ++.+.+..+..+-.                       +.+.. ..+...+++||||++||+++         
T Consensus       246 ~~~d~~~-~~~~~~~~~~~~~~-----------------------~~~~~-~~~~~~~~~spdg~~l~v~~---------  291 (331)
T 3u4y_A          246 FNFNQLS-GTLSFVKSFGHGLL-----------------------IDPRP-LFGANQMALNKTETKLFISA---------  291 (331)
T ss_dssp             EEEETTT-TEEEEEEEEECCCC-----------------------CCCGG-GTTCCCEEECTTSSEEEEEE---------
T ss_pred             EEEECCC-Cceeeecccccccc-----------------------cCCCC-cccccceEECCCCCEEEEec---------
Confidence            9998743 22222333332100                       00111 11124589999999999999         


Q ss_pred             cccccccCCcEEEEEEee
Q 027522          163 FYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       163 ~yp~~~s~~~~i~~~dvd  180 (222)
                            +++..+..+|++
T Consensus       292 ------~~~~~v~v~d~~  303 (331)
T 3u4y_A          292 ------NISRELKVFTIS  303 (331)
T ss_dssp             ------TTTTEEEEEETT
T ss_pred             ------CCCCcEEEEEec
Confidence                  356677778764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.31  E-value=3.7e-11  Score=107.98  Aligned_cols=86  Identities=7%  Similarity=-0.096  Sum_probs=64.1

Q ss_pred             EEEcCCCCeEEEEecc---------CceEEEEEeCCCCCeeEEEEEEec-CcccccccCCCCCCceeEEEEcCCCCEEEE
Q 027522            5 FLHDPSKDIGFVGCAL---------ASTMVRFSKTQDGSWNHEVAISVK-SLKVQNWILPEMPGLITDFLISLDDRFLYF   74 (222)
Q Consensus         5 ~afhP~g~~aYvv~EL---------sstV~~~~~d~~g~~~~~q~is~~-p~~~~g~~~~~~~~~~adI~iSpDgrfLYv   74 (222)
                      ++|+|+|+++||.|++         +++|.+|...   +++..+.+.++ +..+...      ..+..+.+|||||+|||
T Consensus        71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~---t~~~~~~i~~~~~~~~~~g------~~p~~~~~spDG~~l~v  141 (373)
T 2mad_H           71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV---TFLPIADIELPDAPRFDVG------PYSWMNANTPNNADLLF  141 (373)
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCeEEEEECC---CCcEEEEEECCCccccccC------CCccceEECCCCCEEEE
Confidence            6899999999999975         5678888642   56667777765 3222211      34579999999999999


Q ss_pred             EeCC-CCcEEEEEecCCCCCeEEEE-EEecc
Q 027522           75 SNWL-HGDIRQYNIEDPKNPVLTGQ-IWVGG  103 (222)
Q Consensus        75 SnRg-h~sI~vf~i~d~~~~~L~~~-v~~gG  103 (222)
                      +|+. .++|.++| .   +++++.+ +.++|
T Consensus       142 ~n~~~~~~v~viD-~---t~~~~~~~i~~~~  168 (373)
T 2mad_H          142 FQFAAGPAVGLVV-Q---GGSSDDQLLSSPT  168 (373)
T ss_pred             EecCCCCeEEEEE-C---CCCEEeEEcCCCc
Confidence            9986 68899986 4   4677777 77644

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.27  E-value=5.9e-11  Score=113.35  Aligned_cols=133  Identities=11%  Similarity=0.220  Sum_probs=91.9

Q ss_pred             EcCCCCeEEEEeccC-ceEEEEEeCCCC----CeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC--
Q 027522            7 HDPSKDIGFVGCALA-STMVRFSKTQDG----SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH--   79 (222)
Q Consensus         7 fhP~g~~aYvv~ELs-stV~~~~~d~~g----~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh--   79 (222)
                      +||++..+|+.++|+ ++|+++..+..+    .|+..+++.+..            ..+..|.+|||+|+|||+|+++  
T Consensus       396 ~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g------------~g~~~i~~~p~~~~l~v~~~~~~~  463 (567)
T 1qks_A          396 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG------------GGSLFIKTHPNSQYLYVDATLNPE  463 (567)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC------------SCCCCEECCTTCSEEEEECTTCSS
T ss_pred             ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC------------CCCEEEEeCCCCCeEEEecCCCCC
Confidence            799999999999997 789999875322    288888887642            1236789999999999999964  


Q ss_pred             ----CcEEEEEecCCC-CC--eEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE
Q 027522           80 ----GDIRQYNIEDPK-NP--VLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT  152 (222)
Q Consensus        80 ----~sI~vf~i~d~~-~~--~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva  152 (222)
                          ++|++|++.... .+  +....+.++.. .              ..|+    +|++    |++|.++|||++||++
T Consensus       464 ~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~-~--------------~~~~----~~~~----~~~~~~~~~G~~~~~s  520 (567)
T 1qks_A          464 AEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW-A--------------GITE----GQPR----VVQGEFNKDGTEVWFS  520 (567)
T ss_dssp             HHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH-H--------------TCCS----SCCE----EEEEEECTTSSEEEEE
T ss_pred             cccCceEEEEECCcccccccCCCcEEeccccc-c--------------ccCC----CCcc----eEeeeECCCCCEEEEE
Confidence                599999996430 11  11223333100 0              0010    3677    9999999999999999


Q ss_pred             eCCCCccccccccccccCCcEEEEEEeeCCCCCee
Q 027522          153 NSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       153 Nsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                      |     |...      ++...|+.+  |..|+++.
T Consensus       521 ~-----~~~~------~~~~~i~v~--D~~t~~~~  542 (567)
T 1qks_A          521 V-----WNGK------DQESALVVV--DDKTLELK  542 (567)
T ss_dssp             E-----ECCT------TSCCEEEEE--ETTTTEEE
T ss_pred             e-----ecCC------CCCCcEEEE--ECCCceEE
Confidence            7     5332      234555555  77898874

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.27  E-value=2.1e-10  Score=95.90  Aligned_cols=117  Identities=8%  Similarity=0.093  Sum_probs=85.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+|+++|+.++ +++|.++... ++  +..+.+.......        ...+..|.+||||++||+++...+.|.+
T Consensus       190 ~~~s~dg~~l~~~~~-~~~i~~~d~~-~~--~~~~~~~~~~~~~--------~~~~~~~~~s~dg~~l~~~~~~~~~v~~  257 (353)
T 3vgz_A          190 LALDSEGKRLYTTNA-DGELITIDTA-DN--KILSRKKLLDDGK--------EHFFINISLDTARQRAFITDSKAAEVLV  257 (353)
T ss_dssp             CEEETTTTEEEEECT-TSEEEEEETT-TT--EEEEEEECCCSSS--------CCCEEEEEEETTTTEEEEEESSSSEEEE
T ss_pred             EEECCCCCEEEEEcC-CCeEEEEECC-CC--eEEEEEEcCCCCC--------CcccceEEECCCCCEEEEEeCCCCEEEE
Confidence            689999999999988 7889887653 33  3344444422111        1346789999999999999999999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY  164 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y  164 (222)
                      |++.   +++++..+..+                                 .|..++++|||++|||+|        +  
T Consensus       258 ~d~~---~~~~~~~~~~~---------------------------------~~~~~~~s~dg~~l~v~~--------~--  291 (353)
T 3vgz_A          258 VDTR---NGNILAKVAAP---------------------------------ESLAVLFNPARNEAYVTH--------R--  291 (353)
T ss_dssp             EETT---TCCEEEEEECS---------------------------------SCCCEEEETTTTEEEEEE--------T--
T ss_pred             EECC---CCcEEEEEEcC---------------------------------CCceEEECCCCCEEEEEE--------C--
Confidence            9874   35565555541                                 167899999999999999        3  


Q ss_pred             cccccCCcEEEEEEeeCCCCCe
Q 027522          165 PELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       165 p~~~s~~~~i~~~dvd~~~G~l  186 (222)
                           .+..+..+|  ..+|++
T Consensus       292 -----~~~~v~~~d--~~~~~~  306 (353)
T 3vgz_A          292 -----QAGKVSVID--AKSYKV  306 (353)
T ss_dssp             -----TTTEEEEEE--TTTTEE
T ss_pred             -----CCCeEEEEE--CCCCeE
Confidence                 456777774  467765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.27  E-value=2.9e-11  Score=110.16  Aligned_cols=101  Identities=7%  Similarity=-0.177  Sum_probs=74.4

Q ss_pred             CCCeEEEEeccCc----eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC--------
Q 027522           10 SKDIGFVGCALAS----TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW--------   77 (222)
Q Consensus        10 ~g~~aYvv~ELss----tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR--------   77 (222)
                      ..+++||.||-++    +|+++.-+   +++.+.++.+.             ..+ .|.+|||||+|||+|.        
T Consensus        30 ~~~~~yV~~~~~~~~~d~vsvID~~---t~~v~~~i~vG-------------~~P-~i~~spDg~~lyVan~~~~r~~~G   92 (368)
T 1mda_H           30 ISRRSHITLPAYFAGTTENWVSCAG---CGVTLGHSLGA-------------FLS-LAVAGHSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETT---TTEEEEEEEEC-------------TTC-EEEECTTSSCEEEEEEEETTTTSS
T ss_pred             CCCeEEEECCccCCccceEEEEECC---CCeEEEEEeCC-------------CCC-ceEECCCCCEEEEEcccccccccC
Confidence            5688999999777    77788642   45656666543             124 7999999999999993        


Q ss_pred             -CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           78 -LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        78 -gh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                       ..+.|.+||   +.+.+.+++|.++|.-               .+     .-|..    |+++++|||||||||+|.
T Consensus        93 ~~~~~VsviD---~~T~~vv~~I~v~~~~---------------~~-----~~g~~----P~~ia~SpDGk~lyVan~  143 (368)
T 1mda_H           93 KRTDYVEVFD---PVTFLPIADIELPDAP---------------RF-----SVGPR----VHIIGNCASSACLLFFLF  143 (368)
T ss_dssp             SEEEEEEEEC---TTTCCEEEEEEETTSC---------------SC-----CBSCC----TTSEEECTTSSCEEEEEC
T ss_pred             CCCCEEEEEE---CCCCCEEEEEECCCcc---------------cc-----ccCCC----cceEEEcCCCCEEEEEcc
Confidence             357788885   4568889999886310               00     01344    999999999999999993

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.24  E-value=9.8e-11  Score=109.91  Aligned_cols=98  Identities=13%  Similarity=0.080  Sum_probs=76.3

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|++ .+||.++.+++|.++.-+ .+  +..+++.+.      .      . +..+.+|||||+||++|+. +.|.+
T Consensus       143 ~~~~p~~-~~~vs~~~d~~V~v~D~~-t~--~~~~~i~~g------~------~-~~~v~~spdg~~l~v~~~d-~~V~v  204 (543)
T 1nir_A          143 NDLDLPN-LFSVTLRDAGQIALVDGD-SK--KIVKVIDTG------Y------A-VHISRMSASGRYLLVIGRD-ARIDM  204 (543)
T ss_dssp             SCCCGGG-EEEEEEGGGTEEEEEETT-TC--CEEEEEECS------T------T-EEEEEECTTSCEEEEEETT-SEEEE
T ss_pred             cccCCCC-EEEEEEcCCCeEEEEECC-Cc--eEEEEEecC------c------c-cceEEECCCCCEEEEECCC-CeEEE
Confidence            3578876 789999999999999653 34  334555432      1      1 4688999999999999998 99999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECC----CCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSL----DGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lsp----dGk~LyvaN  153 (222)
                      |++. ..+++++.++..                            |..    ||.+++||    ||++|||+|
T Consensus       205 ~D~~-~~t~~~~~~i~~----------------------------g~~----p~~va~sp~~~~dg~~l~v~~  244 (543)
T 1nir_A          205 IDLW-AKEPTKVAEIKI----------------------------GIE----ARSVESSKFKGYEDRYTIAGA  244 (543)
T ss_dssp             EETT-SSSCEEEEEEEC----------------------------CSE----EEEEEECCSTTCTTTEEEEEE
T ss_pred             EECc-CCCCcEEEEEec----------------------------CCC----cceEEeCCCcCCCCCEEEEEE
Confidence            9983 345777777665                            334    99999999    999999999

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.22  E-value=6.6e-11  Score=109.30  Aligned_cols=114  Identities=9%  Similarity=-0.032  Sum_probs=82.5

Q ss_pred             eEEEcCCCCeEEEEec---------cCceEEEEEeCCCCCeeEEEEEEecCcc-cccccCCCCCCceeEEEEcCCCCEEE
Q 027522            4 RFLHDPSKDIGFVGCA---------LASTMVRFSKTQDGSWNHEVAISVKSLK-VQNWILPEMPGLITDFLISLDDRFLY   73 (222)
Q Consensus         4 r~afhP~g~~aYvv~E---------LsstV~~~~~d~~g~~~~~q~is~~p~~-~~g~~~~~~~~~~adI~iSpDgrfLY   73 (222)
                      .++++|+|+++||.|.         -+++|.++.-   .+++....|.+++.+ ...      ...+..+.+|||||+||
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~---~t~~v~~~I~v~~g~r~~~------g~~P~~~a~spDGk~ly  152 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP---VTLLPTADIELPDAPRFLV------GTYPWMTSLTPDGKTLL  152 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT---TTCCEEEEEEETTCCCCCB------SCCGGGEEECTTSSEEE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC---CCCeEEEEEECCCcccccc------CCCCceEEEcCCCCEEE
Confidence            3789999999999995         4677888854   246677778776411 110      13468899999999999


Q ss_pred             EEeCC-CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE
Q 027522           74 FSNWL-HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT  152 (222)
Q Consensus        74 vSnRg-h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva  152 (222)
                      |+|+. .++|+++|+.   +.+++.+|.+.|..                        |-...|.-+.+++++||+++||+
T Consensus       153 Van~~~~~~VsVID~~---t~~vv~tI~v~g~~------------------------~~~P~g~~~~~~~~~DG~~~~v~  205 (386)
T 3sjl_D          153 FYQFSPAPAVGVVDLE---GKAFKRMLDVPDCY------------------------HIFPTAPDTFFMHCRDGSLAKVA  205 (386)
T ss_dssp             EEECSSSCEEEEEETT---TTEEEEEEECCSEE------------------------EEEEEETTEEEEEETTSCEEEEE
T ss_pred             EEEcCCCCeEEEEECC---CCcEEEEEECCCcc------------------------eeecCCCceeEEECCCCCEEEEE
Confidence            99985 7899999773   58899999886531                        11111223566888999999888


Q ss_pred             e
Q 027522          153 N  153 (222)
Q Consensus       153 N  153 (222)
                      +
T Consensus       206 ~  206 (386)
T 3sjl_D          206 F  206 (386)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.22  E-value=3.1e-10  Score=107.69  Aligned_cols=146  Identities=11%  Similarity=0.045  Sum_probs=94.2

Q ss_pred             EEEcCCCCeEEEEe------------------ccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEE-
Q 027522            5 FLHDPSKDIGFVGC------------------ALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLI-   65 (222)
Q Consensus         5 ~afhP~g~~aYvv~------------------ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~i-   65 (222)
                      |.|+|+++.+|+.+                  +-+.+|.+|..+. +  +..+++.+...   |       ..+.+|++ 
T Consensus       193 ~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~--k~~~tI~vg~~---g-------~~P~~i~f~  259 (462)
T 2ece_A          193 FWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-R--KRIHSLTLGEE---N-------RMALELRPL  259 (462)
T ss_dssp             EEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-T--EEEEEEESCTT---E-------EEEEEEEEC
T ss_pred             EEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC-C--cEeeEEecCCC---C-------CccceeEee
Confidence            66799999888887                  5689999998853 3  66677776421   1       34578888 


Q ss_pred             -cCCCCEEEEEeC-----CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCc-cccCcccCCCCe
Q 027522           66 -SLDDRFLYFSNW-----LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVP-EVQGHRLRGGPQ  138 (222)
Q Consensus        66 -SpDgrfLYvSnR-----gh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~-~v~G~~~~ggPr  138 (222)
                       ||||+++||.|-     ..++|.+|..++ +..+....|.+.    .   .++.+     ..|+.+ ..+|  +.+.|.
T Consensus       260 ~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~----~---~~v~~-----~lp~~~~~f~~--~~~~pa  324 (462)
T 2ece_A          260 HDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIP----A---EPLEG-----NLPEILKPFKA--VPPLVT  324 (462)
T ss_dssp             SSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEEC----C---EECCS-----SCCGGGGGGTE--ECCCCC
T ss_pred             ECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCC----C---ccccc-----ccccccccccc--CCCcee
Confidence             999999999999     999999999854 322222222220    0   00000     111100 0000  012499


Q ss_pred             eEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeE
Q 027522          139 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFV  194 (222)
Q Consensus       139 ~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~v  194 (222)
                      .+.||||||+|||+|        .       ..+.|..+|++ +.+.+++.....+
T Consensus       325 ~I~lS~DGrfLYVSn--------r-------g~d~VavfdV~-d~~~~~lv~~I~t  364 (462)
T 2ece_A          325 DIDISLDDKFLYLSL--------W-------GIGEVRQYDIS-NPFKPVLTGKVKL  364 (462)
T ss_dssp             CEEECTTSCEEEEEE--------T-------TTTEEEEEECS-STTSCEEEEEEEC
T ss_pred             EEEECCCCCEEEEEe--------C-------CCCEEEEEEec-CCCCcEEEEEEEe
Confidence            999999999999999        3       35677778875 4455665554433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.19  E-value=6.3e-11  Score=115.35  Aligned_cols=145  Identities=17%  Similarity=0.094  Sum_probs=94.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCC-----CCCeeEEEEE-EecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQ-----DGSWNHEVAI-SVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL   78 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~-----~g~~~~~q~i-s~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg   78 (222)
                      +.++|||+++||.++++++|+++..+.     +|++.....+ ..+          +....+-.+.++||| ++|++|..
T Consensus       282 v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v----------~vG~gP~h~aF~~dG-~aY~t~~l  350 (595)
T 1fwx_A          282 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP----------ELGLGPLHTAFDGRG-NAYTSLFL  350 (595)
T ss_dssp             EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC----------BCCSCEEEEEECTTS-EEEEEETT
T ss_pred             EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc----------CCCCCcceEEECCCC-eEEEEEec
Confidence            579999999999999999999998752     2333222111 111          122557999999999 99999999


Q ss_pred             CCcEEEEEecCC-------CCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEE
Q 027522           79 HGDIRQYNIEDP-------KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYV  151 (222)
Q Consensus        79 h~sI~vf~i~d~-------~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyv  151 (222)
                      .++|++|+++..       ...+.+.++.++                  .||-.    ...    .--.+++|||||||+
T Consensus       351 dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~------------------yqpGh----~~~----~~g~t~~~DGk~l~~  404 (595)
T 1fwx_A          351 DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH------------------YQPGH----LKT----VMGETLDATNDWLVC  404 (595)
T ss_dssp             TTEEEEEEHHHHHHHHHTCSCCCEEEEEECS------------------SCEEE----EEE----TTTTSTTCCSSEEEE
T ss_pred             CCcEEEEEhhHhhhhhcccccceeEEEeecc------------------ccccc----cee----ccceEeCCCCCEEEE
Confidence            999999999541       124567777774                  11100    000    223467999999999


Q ss_pred             EeCCCCccccccc-ccccc--CCcEEEEEEeeCCCCCeeeccceeE
Q 027522          152 TNSLFSAWDCQFY-PELKE--KGSHMLQIDVNSEKGGMAINPNFFV  194 (222)
Q Consensus       152 aNsl~~~wd~Q~y-p~~~s--~~~~i~~~dvd~~~G~l~~~~~f~v  194 (222)
                      +|    ++.|..| |-+-.  +|.++  |||  .+|+|++-.+..+
T Consensus       405 ~N----k~skdr~~~~gp~~~~~~ql--~di--s~~~m~lv~d~p~  442 (595)
T 1fwx_A          405 LS----KFSKDRFLNVGPLKPENDQL--IDI--SGDKMVLVHDGPT  442 (595)
T ss_dssp             EE----SCCTTSSCCCCSSCCEEEEE--EEC--SSSSCEEEEEEEE
T ss_pred             cC----CCCccccccCCCCCCCcceE--EEc--CCCcEEEEEEEcC
Confidence            99    2221111 11101  12244  566  6789998888877

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.18  E-value=5e-10  Score=106.90  Aligned_cols=130  Identities=11%  Similarity=0.040  Sum_probs=94.2

Q ss_pred             eEEEc----CCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC
Q 027522            4 RFLHD----PSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH   79 (222)
Q Consensus         4 r~afh----P~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh   79 (222)
                      -++|+    |+|+++||.||++++|.++.   ..+++..+++++....+.+....+ ....+.|..|+++..+|+++...
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD---~~t~~~~~~i~~~~~~~~~~~~~p-~~rva~i~~s~~~~~~vv~~~~~  319 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYWPPQYVIMD---GETLEPKKIQSTRGMTYDEQEYHP-EPRVAAILASHYRPEFIVNVKET  319 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEE---TTTCCEEEEEECCEECTTTCCEES-CCCEEEEEECSSSSEEEEEETTT
T ss_pred             eeEEccccCCCCCEEEEEEccCCeEEEEE---CCCCcEEEEEeccccccccccccC-CCceEEEEEcCCCCEEEEEecCC
Confidence            36889    79999999999999999995   246788888887643332210000 02568899999999999999999


Q ss_pred             CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcc
Q 027522           80 GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAW  159 (222)
Q Consensus        80 ~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~w  159 (222)
                      +.|++++..+....+ +..+..                            |+.    |+++.+|||||+|||||      
T Consensus       320 g~v~~vd~~~~~~~~-v~~i~~----------------------------~~~----~~d~~~~pdgr~~~va~------  360 (567)
T 1qks_A          320 GKILLVDYTDLNNLK-TTEISA----------------------------ERF----LHDGGLDGSHRYFITAA------  360 (567)
T ss_dssp             TEEEEEETTCSSEEE-EEEEEC----------------------------CSS----EEEEEECTTSCEEEEEE------
T ss_pred             CeEEEEecCCCccce-eeeeec----------------------------ccc----ccCceECCCCCEEEEEe------
Confidence            999999886533222 222222                            455    99999999999999999      


Q ss_pred             ccccccccccCCcEEEEEEeeCCCCCee
Q 027522          160 DCQFYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       160 d~Q~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                        +.       +..|..+  |+.+|++.
T Consensus       361 --~~-------sn~V~Vi--D~~t~kl~  377 (567)
T 1qks_A          361 --NA-------RNKLVVI--DTKEGKLV  377 (567)
T ss_dssp             --GG-------GTEEEEE--ETTTTEEE
T ss_pred             --CC-------CCeEEEE--ECCCCcEE
Confidence              53       4445555  66788763

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.13  E-value=2.9e-09  Score=90.38  Aligned_cols=106  Identities=12%  Similarity=0.109  Sum_probs=83.0

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeC-CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d-~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ++|+|+++.+|+.+..+.+|++|.++ ++|.+...+++...+..   .      ..+..|.+++|| .|||++++.+.|.
T Consensus       154 i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~---~------~~p~g~~~d~~G-~lwva~~~~~~v~  223 (297)
T 3g4e_A          154 LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE---E------QIPDGMCIDAEG-KLWVACYNGGRVI  223 (297)
T ss_dssp             EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG---G------CEEEEEEEBTTS-CEEEEEETTTEEE
T ss_pred             eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC---C------CCCCeeEECCCC-CEEEEEcCCCEEE
Confidence            68999999999999999999999986 67877655554332211   1      456889999999 5999999888888


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEEC-CCCCEEEEEeC
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS-LDGKRLYVTNS  154 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~ls-pdGk~LyvaNs  154 (222)
                      +|   ++.+++++..+.+.                           ...    |..++++ ||+++||||++
T Consensus       224 ~~---d~~tG~~~~~i~~p---------------------------~~~----~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          224 RL---DPVTGKRLQTVKLP---------------------------VDK----TTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EE---CTTTCCEEEEEECS---------------------------SSB----EEEEEEESGGGCEEEEEEB
T ss_pred             EE---cCCCceEEEEEECC---------------------------CCC----ceEEEEeCCCCCEEEEEcC
Confidence            88   44557787777652                           123    8899998 99999999995

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.08  E-value=6e-10  Score=103.76  Aligned_cols=87  Identities=8%  Similarity=-0.013  Sum_probs=66.6

Q ss_pred             EEEcCCCCeEEEEec---------cCceEEEEEeCCCCCeeEEEEEEec-CcccccccCCCCCCceeEEEEcCCCCEEEE
Q 027522            5 FLHDPSKDIGFVGCA---------LASTMVRFSKTQDGSWNHEVAISVK-SLKVQNWILPEMPGLITDFLISLDDRFLYF   74 (222)
Q Consensus         5 ~afhP~g~~aYvv~E---------LsstV~~~~~d~~g~~~~~q~is~~-p~~~~g~~~~~~~~~~adI~iSpDgrfLYv   74 (222)
                      ++++|+|+++||.|.         -+++|+++.-   .+++..+.|.++ +..+...      ..+..+.+|||||+|||
T Consensus       123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~---~t~~vv~~I~v~g~~r~~~g------~~P~~~~~spDGk~lyV  193 (426)
T 3c75_H          123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP---VTFLPIADIELPDAPRFLVG------TYQWMNALTPDNKNLLF  193 (426)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT---TTCCEEEEEEETTCCCCCBS------CCGGGSEECTTSSEEEE
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCEEEEEEC---CCCcEEEEEECCCccccccC------CCcceEEEcCCCCEEEE
Confidence            689999999999995         4678998843   245667778775 3222111      34578999999999999


Q ss_pred             EeCC-CCcEEEEEecCCCCCeEEEEEEecc
Q 027522           75 SNWL-HGDIRQYNIEDPKNPVLTGQIWVGG  103 (222)
Q Consensus        75 SnRg-h~sI~vf~i~d~~~~~L~~~v~~gG  103 (222)
                      +|+. .++|.++|+.   +.+++.+|.++|
T Consensus       194 ~n~~~~~~VsVID~~---t~kvv~~I~v~g  220 (426)
T 3c75_H          194 YQFSPAPAVGVVDLE---GKTFDRMLDVPD  220 (426)
T ss_dssp             EECSSSCEEEEEETT---TTEEEEEEECCS
T ss_pred             EecCCCCeEEEEECC---CCeEEEEEEcCC
Confidence            9996 7899999763   578899999865

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.07  E-value=1.5e-10  Score=112.69  Aligned_cols=102  Identities=11%  Similarity=0.027  Sum_probs=77.1

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCC-------CCeeEEEEEEecCcccc-cccCCCCCCceeEEEEcCCCCEEEEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQD-------GSWNHEVAISVKSLKVQ-NWILPEMPGLITDFLISLDDRFLYFS   75 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~-------g~~~~~q~is~~p~~~~-g~~~~~~~~~~adI~iSpDgrfLYvS   75 (222)
                      -++|+|+| +||+.+||+|+|.+|.+++.       ..+...+.+.+   .+. |..     ..+..+.+||||||||++
T Consensus       335 h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV---~yqpGh~-----~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          335 HTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV---HYQPGHL-----KTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             EEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC---SSCEEEE-----EETTTTSTTCCSSEEEEE
T ss_pred             eEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec---ccccccc-----eeccceEeCCCCCEEEEc
Confidence            36899999 99999999999999988531       12344444443   333 210     223678899999999999


Q ss_pred             eCCC-CcE-----------EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEEC
Q 027522           76 NWLH-GDI-----------RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS  143 (222)
Q Consensus        76 nRgh-~sI-----------~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~ls  143 (222)
                      |+++ |.+           .+|+|+ .++.+|+...+++                            ..    ||++++.
T Consensus       406 Nk~skdr~~~~gp~~~~~~ql~dis-~~~m~lv~d~p~~----------------------------~e----Ph~~~i~  452 (595)
T 1fwx_A          406 SKFSKDRFLNVGPLKPENDQLIDIS-GDKMVLVHDGPTF----------------------------AE----PHDAIAV  452 (595)
T ss_dssp             ESCCTTSSCCCCSSCCEEEEEEECS-SSSCEEEEEEEES----------------------------SC----CCCEEEE
T ss_pred             CCCCccccccCCCCCCCcceEEEcC-CCcEEEEEEEcCC----------------------------CC----CCceEEc
Confidence            9998 888           999995 4678898888873                            23    9999999


Q ss_pred             CCCC
Q 027522          144 LDGK  147 (222)
Q Consensus       144 pdGk  147 (222)
                      |..+
T Consensus       453 ~~~~  456 (595)
T 1fwx_A          453 HPSI  456 (595)
T ss_dssp             CTTT
T ss_pred             cHHH
Confidence            9886

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=3.3e-09  Score=97.09  Aligned_cols=146  Identities=13%  Similarity=0.101  Sum_probs=94.5

Q ss_pred             EEEcCCCCeEEEEecc----CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            5 FLHDPSKDIGFVGCAL----ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         5 ~afhP~g~~aYvv~EL----sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      ++|+|+|+++||.+--    ...|.++..  +|.+...+.+..    +         ..+..|.++|++.+||++.++.+
T Consensus       184 ia~d~~G~~lyvad~~~~~~~~~v~~~~~--~g~~~~~~~l~~----~---------~~p~giavdp~~g~lyv~d~~~~  248 (430)
T 3tc9_A          184 ICWTHEADSMIITNDQNNNDRPNNYILTR--ESGFKVITELTK----G---------QNCNGAETHPINGELYFNSWNAG  248 (430)
T ss_dssp             EEECTTSSEEEEEECCSCTTSEEEEEEEG--GGTSCSEEEEEE----C---------SSCCCEEECTTTCCEEEEETTTT
T ss_pred             EEEeCCCCEEEEEeCCCCcccceEEEEeC--CCceeeeeeecc----C---------CCceEEEEeCCCCEEEEEECCCC
Confidence            6899999999999863    334555543  455543332221    1         34578999998888999999999


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccc
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWD  160 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd  160 (222)
                      .|.+|+.+.   ..+......+                          .+.    +|+.++++|+|++|||++       
T Consensus       249 ~V~~~~~~~---~~~~~~~~~~--------------------------~~~----~P~gia~~pdG~~lyv~d-------  288 (430)
T 3tc9_A          249 QVFRYDFTT---QETTPLFTIQ--------------------------DSG----WEFHIQFHPSGNYAYIVV-------  288 (430)
T ss_dssp             EEEEEETTT---TEEEEEEECS--------------------------SSS----CCEEEEECTTSSEEEEEE-------
T ss_pred             EEEEEECCC---CcEEEEEEcC--------------------------CCC----cceeEEEcCCCCEEEEEE-------
Confidence            999887632   3331111111                          122    499999999999999999       


Q ss_pred             cccccccccCCcEEEEEEeeCCCCCeeeccceeEecCC--CCCCCcceeeeecCC
Q 027522          161 CQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEA--EPDGPALAHEMRYPG  213 (222)
Q Consensus       161 ~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~--~~~g~~~~h~~r~~~  213 (222)
                              +.+..|.+++.|..+|.+..-..+.=.++.  -.+|+...-++..|.
T Consensus       289 --------~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~  335 (430)
T 3tc9_A          289 --------VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPR  335 (430)
T ss_dssp             --------TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEE
T ss_pred             --------CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCc
Confidence                    468899999998877766322122112221  225555555666666

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.01  E-value=5e-09  Score=90.74  Aligned_cols=95  Identities=12%  Similarity=0.148  Sum_probs=68.7

Q ss_pred             CCCeEEEEec-cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC---------
Q 027522           10 SKDIGFVGCA-LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH---------   79 (222)
Q Consensus        10 ~g~~aYvv~E-LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh---------   79 (222)
                      +++.+||.+. .+++|.++... ++  +..+.+.+.             ..+..|.++|||| ||+++++.         
T Consensus       139 ~~~~lyv~~~~~~~~v~viD~~-t~--~~~~~i~~g-------------~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~  201 (328)
T 3dsm_A          139 YGKYVYVNCWSYQNRILKIDTE-TD--KVVDELTIG-------------IQPTSLVMDKYNK-MWTITDGGYEGSPYGYE  201 (328)
T ss_dssp             ETTEEEEEECTTCCEEEEEETT-TT--EEEEEEECS-------------SCBCCCEECTTSE-EEEEBCCBCTTCSSCBC
T ss_pred             ECCEEEEEcCCCCCEEEEEECC-CC--eEEEEEEcC-------------CCccceEEcCCCC-EEEEECCCccCCccccC
Confidence            5789999997 78999999763 34  334444432             2347899999999 77777765         


Q ss_pred             -CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           80 -GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        80 -~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                       +.|.+|+.   .+.+++..+.+.                          .|..    |+.|++||||++|||+|+
T Consensus       202 ~~~v~~id~---~t~~v~~~~~~~--------------------------~g~~----p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          202 APSLYRIDA---ETFTVEKQFKFK--------------------------LGDW----PSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             CCEEEEEET---TTTEEEEEEECC--------------------------TTCC----CEEEEECTTSCEEEEESS
T ss_pred             CceEEEEEC---CCCeEEEEEecC--------------------------CCCC----ceeEEEecCCCEEEEEcc
Confidence             66777754   457776665541                          1444    999999999999999993

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.01  E-value=2.4e-08  Score=85.25  Aligned_cols=99  Identities=20%  Similarity=0.259  Sum_probs=75.7

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++|+.+.-+++|.++... +++  ....+...             ..+..+.+||||++||+++...+.|.
T Consensus        78 ~~~~spdg~~l~~~~~~~~~v~v~d~~-~~~--~~~~~~~~-------------~~~~~~~~s~dg~~l~~~~~~~~~v~  141 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASSTLSVIDTT-SNT--VAGTVKTG-------------KSPLGLALSPDGKKLYVTNNGDKTVS  141 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETT-TTE--EEEEEECS-------------SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             ceEECCCCCEEEEEECCCCEEEEEECC-CCe--EEEEEeCC-------------CCcceEEECCCCCEEEEEeCCCCEEE
Confidence            578999999999999988999999764 332  22222211             33588999999999999999999999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++++..+..                            +..    |+.++++|||++||+++
T Consensus       142 ~~d~~~---~~~~~~~~~----------------------------~~~----~~~~~~~~dg~~l~~~~  176 (391)
T 1l0q_A          142 VINTVT---KAVINTVSV----------------------------GRS----PKGIAVTPDGTKVYVAN  176 (391)
T ss_dssp             EEETTT---TEEEEEEEC----------------------------CSS----EEEEEECTTSSEEEEEE
T ss_pred             EEECCC---CcEEEEEec----------------------------CCC----cceEEECCCCCEEEEEe
Confidence            998743   555444433                            233    88999999999999998

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.00  E-value=1.4e-08  Score=86.11  Aligned_cols=128  Identities=12%  Similarity=0.056  Sum_probs=81.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC-----
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH-----   79 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh-----   79 (222)
                      ++++|+|+ .|+..  .+.|.++..+ +|+++..  ....+.  ...      +.+.+|.++|||| ||+++.+.     
T Consensus        59 i~~~~dG~-l~v~~--~~~l~~~d~~-~g~~~~~--~~~~~~--~~~------~~~~di~~d~dG~-l~~~~~~~~~~~~  123 (297)
T 3g4e_A           59 VALRQSGG-YVATI--GTKFCALNWK-EQSAVVL--ATVDND--KKN------NRFNDGKVDPAGR-YFAGTMAEETAPA  123 (297)
T ss_dssp             EEEBTTSS-EEEEE--TTEEEEEETT-TTEEEEE--EECCTT--CSS------EEEEEEEECTTSC-EEEEEEECCSBTT
T ss_pred             EEECCCCC-EEEEE--CCeEEEEECC-CCcEEEE--EecCCC--CCC------CCCCCEEECCCCC-EEEecCCcccccc
Confidence            68899999 45543  5788888763 4554322  222111  011      4578999999999 66666442     


Q ss_pred             ----CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCC
Q 027522           80 ----GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSL  155 (222)
Q Consensus        80 ----~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl  155 (222)
                          ....+|.++. . +++.. +..+                           ...    |+.+++||||++|||++  
T Consensus       124 ~~~~~~~~l~~~d~-~-g~~~~-~~~~---------------------------~~~----pngi~~spdg~~lyv~~--  167 (297)
T 3g4e_A          124 VLERHQGALYSLFP-D-HHVKK-YFDQ---------------------------VDI----SNGLDWSLDHKIFYYID--  167 (297)
T ss_dssp             BCCTTCEEEEEECT-T-SCEEE-EEEE---------------------------ESB----EEEEEECTTSCEEEEEE--
T ss_pred             cccCCCcEEEEEEC-C-CCEEE-Eeec---------------------------ccc----ccceEEcCCCCEEEEec--
Confidence                4467888843 2 33321 1110                           122    89999999999999999  


Q ss_pred             CCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecC
Q 027522          156 FSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFE  197 (222)
Q Consensus       156 ~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~  197 (222)
                                   +.+..|.++|+|+.+|.++ +.+.+.++.
T Consensus       168 -------------~~~~~i~~~~~d~~~G~~~-~~~~~~~~~  195 (297)
T 3g4e_A          168 -------------SLSYSVDAFDYDLQTGQIS-NRRSVYKLE  195 (297)
T ss_dssp             -------------GGGTEEEEEEECTTTCCEE-EEEEEEECC
T ss_pred             -------------CCCCcEEEEeccCCCCccc-CcEEEEECC
Confidence                         3467788888888888864 234445554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.00  E-value=2.1e-08  Score=85.57  Aligned_cols=99  Identities=20%  Similarity=0.300  Sum_probs=75.6

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|+++++|+.+.-+++|.++... +++  ..+.+...             ..+..+.+||||++||+++...+.|.
T Consensus        36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~-~~~--~~~~~~~~-------------~~v~~~~~spdg~~l~~~~~~~~~v~   99 (391)
T 1l0q_A           36 GAVISPDGTKVYVANAHSNDVSIIDTA-TNN--VIATVPAG-------------SSPQGVAVSPDGKQVYVTNMASSTLS   99 (391)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEETT-TTE--EEEEEECS-------------SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eEEECCCCCEEEEECCCCCeEEEEECC-CCe--EEEEEECC-------------CCccceEECCCCCEEEEEECCCCEEE
Confidence            468999999999999889999998763 343  23333321             23589999999999999998889999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++.+..+..                            +..    |..++++|||++||+++
T Consensus       100 v~d~~~---~~~~~~~~~----------------------------~~~----~~~~~~s~dg~~l~~~~  134 (391)
T 1l0q_A          100 VIDTTS---NTVAGTVKT----------------------------GKS----PLGLALSPDGKKLYVTN  134 (391)
T ss_dssp             EEETTT---TEEEEEEEC----------------------------SSS----EEEEEECTTSSEEEEEE
T ss_pred             EEECCC---CeEEEEEeC----------------------------CCC----cceEEECCCCCEEEEEe
Confidence            998843   455433332                            222    88999999999999987

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.98  E-value=5.4e-09  Score=86.22  Aligned_cols=114  Identities=14%  Similarity=0.142  Sum_probs=80.5

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC------
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW------   77 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR------   77 (222)
                      .++|+|+|+++|+.+.-+.+|.++... +++  ....+........+       ..+..+.+||||++||+++.      
T Consensus        38 ~~~~s~dg~~l~v~~~~~~~v~~~d~~-~~~--~~~~~~~~~~~~~~-------~~~~~~~~s~dg~~l~~~~~~~~~~~  107 (337)
T 1pby_B           38 VPMVAPGGRIAYATVNKSESLVKIDLV-TGE--TLGRIDLSTPEERV-------KSLFGAALSPDGKTLAIYESPVRLEL  107 (337)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEETT-TCC--EEEEEECCBTTEEE-------ECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred             ceEEcCCCCEEEEEeCCCCeEEEEECC-CCC--eEeeEEcCCccccc-------ccccceEECCCCCEEEEEeccccccc
Confidence            368999999999999999999999763 343  33444443211001       12467999999999999973      


Q ss_pred             -----CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE
Q 027522           78 -----LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT  152 (222)
Q Consensus        78 -----gh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva  152 (222)
                           ..+.|.+|++.   +++.+..+..                            |..    |+.+++||||++||++
T Consensus       108 ~~~~~~~~~i~v~d~~---~~~~~~~~~~----------------------------~~~----~~~~~~s~dg~~l~~~  152 (337)
T 1pby_B          108 THFEVQPTRVALYDAE---TLSRRKAFEA----------------------------PRQ----ITMLAWARDGSKLYGL  152 (337)
T ss_dssp             SCEEECCCEEEEEETT---TTEEEEEEEC----------------------------CSS----CCCEEECTTSSCEEEE
T ss_pred             ccccccCceEEEEECC---CCcEEEEEeC----------------------------CCC----cceeEECCCCCEEEEe
Confidence                 35889999874   3555544443                            233    8899999999999999


Q ss_pred             eCCCCccccc
Q 027522          153 NSLFSAWDCQ  162 (222)
Q Consensus       153 Nsl~~~wd~Q  162 (222)
                      +.-...||.+
T Consensus       153 ~~~i~~~d~~  162 (337)
T 1pby_B          153 GRDLHVMDPE  162 (337)
T ss_dssp             SSSEEEEETT
T ss_pred             CCeEEEEECC
Confidence            7666666644

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.97  E-value=1.2e-08  Score=84.89  Aligned_cols=101  Identities=10%  Similarity=0.045  Sum_probs=72.3

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC--CCc
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL--HGD   81 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg--h~s   81 (222)
                      -++++|+++.+|+.++.+++|.++..+  |+..  +++  .+.   +.      ..+.+|.++|++++||+++++  .+.
T Consensus        83 ~ia~d~~~~~lyv~d~~~~~I~~~~~~--g~~~--~~~--~~~---~~------~~P~~i~vd~~~g~lyv~~~~~~~~~  147 (267)
T 1npe_A           83 GIALDHLGRTIFWTDSQLDRIEVAKMD--GTQR--RVL--FDT---GL------VNPRGIVTDPVRGNLYWTDWNRDNPK  147 (267)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETT--SCSC--EEE--ECS---SC------SSEEEEEEETTTTEEEEEECCSSSCE
T ss_pred             EEEEEecCCeEEEEECCCCEEEEEEcC--CCCE--EEE--EEC---CC------CCccEEEEeeCCCEEEEEECCCCCcE
Confidence            368999999999999999999999875  3321  111  111   11      346899999999999999987  578


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |.+++++. ...+.   +...                          +..    .|+.++++++|++||||+
T Consensus       148 I~~~~~dg-~~~~~---~~~~--------------------------~~~----~P~gia~d~~~~~lyv~d  185 (267)
T 1npe_A          148 IETSHMDG-TNRRI---LAQD--------------------------NLG----LPNGLTFDAFSSQLCWVD  185 (267)
T ss_dssp             EEEEETTS-CCCEE---EECT--------------------------TCS----CEEEEEEETTTTEEEEEE
T ss_pred             EEEEecCC-CCcEE---EEEC--------------------------CCC----CCcEEEEcCCCCEEEEEE
Confidence            88887732 22221   1110                          112    399999999999999999

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.97  E-value=1.6e-08  Score=89.06  Aligned_cols=136  Identities=17%  Similarity=0.139  Sum_probs=91.6

Q ss_pred             eEEEcCCCCeEEEEecc--CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522            4 RFLHDPSKDIGFVGCAL--ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD   81 (222)
Q Consensus         4 r~afhP~g~~aYvv~EL--sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s   81 (222)
                      -++|+|++ ++|+.+.+  +++|.++... +|+  ..+.+.+++..+           +..|.  ++|+.||+++|..+.
T Consensus        25 Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~-tg~--v~~~i~l~~~~f-----------geGi~--~~g~~lyv~t~~~~~   87 (266)
T 2iwa_A           25 GLVYAEND-TLFESTGLYGRSSVRQVALQ-TGK--VENIHKMDDSYF-----------GEGLT--LLNEKLYQVVWLKNI   87 (266)
T ss_dssp             EEEECSTT-EEEEEECSTTTCEEEEEETT-TCC--EEEEEECCTTCC-----------EEEEE--EETTEEEEEETTCSE
T ss_pred             cEEEeCCC-eEEEECCCCCCCEEEEEECC-CCC--EEEEEecCCCcc-----------eEEEE--EeCCEEEEEEecCCE
Confidence            47899984 99999976  7899999863 453  455666543222           23344  458899999999999


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC  161 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~  161 (222)
                      |.+||.   .+.++++++..+                             .    |.-+.|++||++|||+|        
T Consensus        88 v~viD~---~t~~v~~~i~~g-----------------------------~----~~g~glt~Dg~~l~vs~--------  123 (266)
T 2iwa_A           88 GFIYDR---RTLSNIKNFTHQ-----------------------------M----KDGWGLATDGKILYGSD--------  123 (266)
T ss_dssp             EEEEET---TTTEEEEEEECC-----------------------------S----SSCCEEEECSSSEEEEC--------
T ss_pred             EEEEEC---CCCcEEEEEECC-----------------------------C----CCeEEEEECCCEEEEEC--------
Confidence            999966   358888888763                             1    44467999999999999        


Q ss_pred             ccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCC
Q 027522          162 QFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGG  214 (222)
Q Consensus       162 Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~g  214 (222)
                      .        +..+..+  |++|.+.  .....|.-++.|..  .+.||-|-+|
T Consensus       124 g--------s~~l~vi--D~~t~~v--~~~I~Vg~~~~p~~--~~nele~~dg  162 (266)
T 2iwa_A          124 G--------TSILYEI--DPHTFKL--IKKHNVKYNGHRVI--RLNELEYING  162 (266)
T ss_dssp             S--------SSEEEEE--CTTTCCE--EEEEECEETTEECC--CEEEEEEETT
T ss_pred             C--------CCeEEEE--ECCCCcE--EEEEEECCCCcccc--cceeEEEECC
Confidence            2        4577777  6677654  33444443322221  4556666544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.94  E-value=4.4e-08  Score=84.77  Aligned_cols=99  Identities=15%  Similarity=0.224  Sum_probs=75.3

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC----
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH----   79 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh----   79 (222)
                      .++|+|+++++|+.+..+++|.+|..+ +++  ..+.+..     .        ..+..|.+||||++||+++...    
T Consensus       307 ~~~~~~~g~~l~~~~~~~~~v~v~d~~-~~~--~~~~~~~-----~--------~~~~~~~~s~dg~~l~~~~~~~~~~~  370 (433)
T 3bws_A          307 HIVSGNTENKIYVSDMCCSKIEVYDLK-EKK--VQKSIPV-----F--------DKPNTIALSPDGKYLYVSCRGPNHPT  370 (433)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEEEETT-TTE--EEEEEEC-----S--------SSEEEEEECTTSSEEEEEECCCCCTT
T ss_pred             eEEECCCCCEEEEEecCCCEEEEEECC-CCc--EEEEecC-----C--------CCCCeEEEcCCCCEEEEEecCCCccc
Confidence            478999999999999999999999874 332  2333321     1        3357999999999999999875    


Q ss_pred             ----------CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEE
Q 027522           80 ----------GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRL  149 (222)
Q Consensus        80 ----------~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~L  149 (222)
                                +.|.+|++.   +++++..+..                            +..    |+.++++|||++|
T Consensus       371 ~~~~~~g~~dg~v~~~d~~---~~~~~~~~~~----------------------------~~~----~~~~~~s~dg~~l  415 (433)
T 3bws_A          371 EGYLKKGLVLGKVYVIDTT---TDTVKEFWEA----------------------------GNQ----PTGLDVSPDNRYL  415 (433)
T ss_dssp             TCTTSCCSSCCEEEEEETT---TTEEEEEEEC----------------------------SSS----EEEEEECTTSCEE
T ss_pred             cccccccccceEEEEEECC---CCcEEEEecC----------------------------CCC----CceEEEcCCCCEE
Confidence                      488888773   3666554443                            223    8899999999999


Q ss_pred             EEEe
Q 027522          150 YVTN  153 (222)
Q Consensus       150 yvaN  153 (222)
                      ++++
T Consensus       416 ~~~~  419 (433)
T 3bws_A          416 VISD  419 (433)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.93  E-value=2e-08  Score=86.86  Aligned_cols=100  Identities=10%  Similarity=0.198  Sum_probs=71.2

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC-CCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL-HGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg-h~sI~   83 (222)
                      ++++|++ .+||.++.+++|.++... ++  +..+.+.+.... ...      ..+..|.+  +++.|||++++ .+.|.
T Consensus        89 i~~~~~g-~lyv~~~~~~~v~~iD~~-t~--~~~~~i~~g~~~-~~~------~~p~~i~~--~~~~lyv~~~~~~~~v~  155 (328)
T 3dsm_A           89 IHFLSDE-KAYVTQIWDYRIFIINPK-TY--EITGYIECPDMD-MES------GSTEQMVQ--YGKYVYVNCWSYQNRIL  155 (328)
T ss_dssp             EEEEETT-EEEEEEBSCSEEEEEETT-TT--EEEEEEECTTCC-TTT------CBCCCEEE--ETTEEEEEECTTCCEEE
T ss_pred             EEEeCCC-eEEEEECCCCeEEEEECC-CC--eEEEEEEcCCcc-ccC------CCcceEEE--ECCEEEEEcCCCCCEEE
Confidence            6788998 899999889999999753 33  445556554310 000      23466777  79999999996 88999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|+..   +.+++.++.+                            |..    |+.++++|||+ |||++
T Consensus       156 viD~~---t~~~~~~i~~----------------------------g~~----p~~i~~~~dG~-l~v~~  189 (328)
T 3dsm_A          156 KIDTE---TDKVVDELTI----------------------------GIQ----PTSLVMDKYNK-MWTIT  189 (328)
T ss_dssp             EEETT---TTEEEEEEEC----------------------------SSC----BCCCEECTTSE-EEEEB
T ss_pred             EEECC---CCeEEEEEEc----------------------------CCC----ccceEEcCCCC-EEEEE
Confidence            99763   4677666665                            333    99999999998 56665

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.92  E-value=1.6e-08  Score=89.03  Aligned_cols=113  Identities=13%  Similarity=0.150  Sum_probs=81.7

Q ss_pred             cCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 027522            8 DPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI   87 (222)
Q Consensus         8 hP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i   87 (222)
                      .++++.+|++++.+++|+++..+   +++....+... .+ .|            +.|++||+.||+|| +.+.|.++  
T Consensus        72 ~~~g~~lyv~t~~~~~v~viD~~---t~~v~~~i~~g-~~-~g------------~glt~Dg~~l~vs~-gs~~l~vi--  131 (266)
T 2iwa_A           72 TLLNEKLYQVVWLKNIGFIYDRR---TLSNIKNFTHQ-MK-DG------------WGLATDGKILYGSD-GTSILYEI--  131 (266)
T ss_dssp             EEETTEEEEEETTCSEEEEEETT---TTEEEEEEECC-SS-SC------------CEEEECSSSEEEEC-SSSEEEEE--
T ss_pred             EEeCCEEEEEEecCCEEEEEECC---CCcEEEEEECC-CC-Ce------------EEEEECCCEEEEEC-CCCeEEEE--
Confidence            33478999999999999998753   45666666654 11 22            34889999999999 88888888  


Q ss_pred             cCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccccccc
Q 027522           88 EDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPEL  167 (222)
Q Consensus        88 ~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~  167 (222)
                       |+.+.+.+.+|.++..                         |+ ....|+.|.+. || +|||+|        .     
T Consensus       132 -D~~t~~v~~~I~Vg~~-------------------------~~-p~~~~nele~~-dg-~lyvn~--------~-----  169 (266)
T 2iwa_A          132 -DPHTFKLIKKHNVKYN-------------------------GH-RVIRLNELEYI-NG-EVWANI--------W-----  169 (266)
T ss_dssp             -CTTTCCEEEEEECEET-------------------------TE-ECCCEEEEEEE-TT-EEEEEE--------T-----
T ss_pred             -ECCCCcEEEEEEECCC-------------------------Cc-ccccceeEEEE-CC-EEEEec--------C-----
Confidence             5566888888888521                         11 12237788888 66 899998        3     


Q ss_pred             ccCCcEEEEEEeeCCCCCe
Q 027522          168 KEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       168 ~s~~~~i~~~dvd~~~G~l  186 (222)
                        .+..|.+|  |+.||+.
T Consensus       170 --~~~~V~vI--D~~tg~V  184 (266)
T 2iwa_A          170 --QTDCIARI--SAKDGTL  184 (266)
T ss_dssp             --TSSEEEEE--ETTTCCE
T ss_pred             --CCCeEEEE--ECCCCcE
Confidence              46688888  6688875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.92  E-value=1.2e-08  Score=87.36  Aligned_cols=119  Identities=12%  Similarity=0.101  Sum_probs=81.5

Q ss_pred             cCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 027522            8 DPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI   87 (222)
Q Consensus         8 hP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i   87 (222)
                      +|+++++||.+...++|.+|..+.+|++...+++...             ..+..|.+++||+ |||++++.+.|.+|+ 
T Consensus       175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-------------~~P~gi~vd~dG~-l~va~~~~~~V~~~~-  239 (306)
T 2p4o_A          175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-------------TNIDDFAFDVEGN-LYGATHIYNSVVRIA-  239 (306)
T ss_dssp             EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-------------CCCSSEEEBTTCC-EEEECBTTCCEEEEC-
T ss_pred             CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-------------CCCCCeEECCCCC-EEEEeCCCCeEEEEC-
Confidence            7889999999999999999998655655433433211             2347899999996 699999999999984 


Q ss_pred             cCCCCCeEE--EEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEEC---CCCCEEEEEeCCCCccccc
Q 027522           88 EDPKNPVLT--GQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS---LDGKRLYVTNSLFSAWDCQ  162 (222)
Q Consensus        88 ~d~~~~~L~--~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~ls---pdGk~LyvaNsl~~~wd~Q  162 (222)
                        +. +++.  ..+..                           ....    |..++++   |||++|||+|+  .....+
T Consensus       240 --~~-G~~~~~~~~~~---------------------------~~~~----p~~~a~~g~~~d~~~LyVt~~--~~~~~~  283 (306)
T 2p4o_A          240 --PD-RSTTIIAQAEQ---------------------------GVIG----STAVAFGQTEGDCTAIYVVTN--GGMFLP  283 (306)
T ss_dssp             --TT-CCEEEEECGGG---------------------------TCTT----EEEEEECCSTTTTTEEEEEEC--TTSSSC
T ss_pred             --CC-CCEEEEeeccc---------------------------ccCC----ceEEEEecccCCCCEEEEECC--CCcccC
Confidence              32 4441  11111                           1233    9999999   99999999996  233333


Q ss_pred             cccccccCCcEEEEEEe
Q 027522          163 FYPELKEKGSHMLQIDV  179 (222)
Q Consensus       163 ~yp~~~s~~~~i~~~dv  179 (222)
                      ..  .......++++++
T Consensus       284 ~~--~~~~~g~v~~i~~  298 (306)
T 2p4o_A          284 PP--TGVVPANVVRLEV  298 (306)
T ss_dssp             CT--TCCCCEEEEEEEC
T ss_pred             CC--cccccceEEEEec
Confidence            20  1123456888866

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.89  E-value=1.1e-09  Score=99.67  Aligned_cols=85  Identities=6%  Similarity=-0.062  Sum_probs=60.8

Q ss_pred             EEEcCCCCeEEEEe---------ccCceEEEEEeCCCCCeeEEEEEEec-Cccc-ccccCCCCCCceeEEEEcCCCCEEE
Q 027522            5 FLHDPSKDIGFVGC---------ALASTMVRFSKTQDGSWNHEVAISVK-SLKV-QNWILPEMPGLITDFLISLDDRFLY   73 (222)
Q Consensus         5 ~afhP~g~~aYvv~---------ELsstV~~~~~d~~g~~~~~q~is~~-p~~~-~g~~~~~~~~~~adI~iSpDgrfLY   73 (222)
                      ++|+|+|+++||.|         |-+++|.++.-.   +++....|.++ +..+ .+       ..+..|.+|||||+||
T Consensus        70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~---T~~vv~~I~v~~~~~~~~g-------~~P~~ia~SpDGk~ly  139 (368)
T 1mda_H           70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV---TFLPIADIELPDAPRFSVG-------PRVHIIGNCASSACLL  139 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT---TCCEEEEEEETTSCSCCBS-------CCTTSEEECTTSSCEE
T ss_pred             eEECCCCCEEEEEcccccccccCCCCCEEEEEECC---CCCEEEEEECCCccccccC-------CCcceEEEcCCCCEEE
Confidence            68999999999999         789999999642   45667777775 1111 11       2357899999999999


Q ss_pred             EEeCC-CCcEEEEEecCCCCCeEEEEEEecc
Q 027522           74 FSNWL-HGDIRQYNIEDPKNPVLTGQIWVGG  103 (222)
Q Consensus        74 vSnRg-h~sI~vf~i~d~~~~~L~~~v~~gG  103 (222)
                      |+|.+ +++|.+ ++-|..+   +.+|.++|
T Consensus       140 Van~~~~~~v~V-~~iD~~t---v~~i~v~~  166 (368)
T 1mda_H          140 FFLFGSSAAAGL-SVPGASD---DQLTKSAS  166 (368)
T ss_dssp             EEECSSSCEEEE-EETTTEE---EEEEECSS
T ss_pred             EEccCCCCeEEE-EEEchhh---ceEEECCC
Confidence            99997 577887 2224322   56666643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.88  E-value=3.3e-08  Score=81.52  Aligned_cols=96  Identities=9%  Similarity=0.132  Sum_probs=66.6

Q ss_pred             EEcCCCCeEEEEeccCceE-----------------------EEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeE
Q 027522            6 LHDPSKDIGFVGCALASTM-----------------------VRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITD   62 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV-----------------------~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~ad   62 (222)
                      +|+|+++++|+.++.+..+                       .++.. .+++..   .+.+.+.          +..+..
T Consensus       180 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~~~~~~---~~~~~~~----------~~~~~~  245 (337)
T 1pby_B          180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL-ETGEMA---MREVRIM----------DVFYFS  245 (337)
T ss_dssp             BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET-TTCCEE---EEEEEEC----------SSCEEE
T ss_pred             eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC-CCCCce---EeecCCC----------CCceee
Confidence            6788999888888877664                       33332 233332   2222211          134578


Q ss_pred             EEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEE
Q 027522           63 FLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL  142 (222)
Q Consensus        63 I~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~l  142 (222)
                      |.+||||++||++   .+.|.+|++.   +++++..+..                            +..    |..+++
T Consensus       246 ~~~s~dg~~l~~~---~~~v~~~d~~---~~~~~~~~~~----------------------------~~~----~~~~~~  287 (337)
T 1pby_B          246 TAVNPAKTRAFGA---YNVLESFDLE---KNASIKRVPL----------------------------PHS----YYSVNV  287 (337)
T ss_dssp             EEECTTSSEEEEE---ESEEEEEETT---TTEEEEEEEC----------------------------SSC----CCEEEE
T ss_pred             EEECCCCCEEEEe---CCeEEEEECC---CCcCcceecC----------------------------CCc----eeeEEE
Confidence            9999999999999   4889999874   3666555544                            223    889999


Q ss_pred             CCCCCEEEEEe
Q 027522          143 SLDGKRLYVTN  153 (222)
Q Consensus       143 spdGk~LyvaN  153 (222)
                      +|||++||+++
T Consensus       288 s~dg~~l~~~~  298 (337)
T 1pby_B          288 STDGSTVWLGG  298 (337)
T ss_dssp             CTTSCEEEEES
T ss_pred             CCCCCEEEEEc
Confidence            99999999986

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.86  E-value=9.1e-08  Score=79.48  Aligned_cols=113  Identities=14%  Similarity=0.088  Sum_probs=78.9

Q ss_pred             EEEcCCCCeEEEEecc--CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            5 FLHDPSKDIGFVGCAL--ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv~EL--sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      ++++|++.++|+.++.  +++|.++..+  |+..  +++..  .   +.      ..+..|.+++|+++||+++++.+.|
T Consensus       127 i~vd~~~g~lyv~~~~~~~~~I~~~~~d--g~~~--~~~~~--~---~~------~~P~gia~d~~~~~lyv~d~~~~~I  191 (267)
T 1npe_A          127 IVTDPVRGNLYWTDWNRDNPKIETSHMD--GTNR--RILAQ--D---NL------GLPNGLTFDAFSSQLCWVDAGTHRA  191 (267)
T ss_dssp             EEEETTTTEEEEEECCSSSCEEEEEETT--SCCC--EEEEC--T---TC------SCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEeeCCCEEEEEECCCCCcEEEEEecC--CCCc--EEEEE--C---CC------CCCcEEEEcCCCCEEEEEECCCCEE
Confidence            6899999999999987  5789888764  3321  22211  1   11      4579999999999999999999999


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ  162 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q  162 (222)
                      .+|+.+.   ..+. .+..                           .+..    |..+++  |+++|||||        +
T Consensus       192 ~~~~~~g---~~~~-~~~~---------------------------~~~~----P~gi~~--d~~~lyva~--------~  226 (267)
T 1npe_A          192 ECLNPAQ---PGRR-KVLE---------------------------GLQY----PFAVTS--YGKNLYYTD--------W  226 (267)
T ss_dssp             EEEETTE---EEEE-EEEE---------------------------CCCS----EEEEEE--ETTEEEEEE--------T
T ss_pred             EEEecCC---CceE-EEec---------------------------CCCC----ceEEEE--eCCEEEEEE--------C
Confidence            9998732   1121 1111                           1233    877665  689999999        3


Q ss_pred             cccccccCCcEEEEEEeeCCCCCe
Q 027522          163 FYPELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       163 ~yp~~~s~~~~i~~~dvd~~~G~l  186 (222)
                             .+..|.++  |+.+|++
T Consensus       227 -------~~~~v~~~--d~~~g~~  241 (267)
T 1npe_A          227 -------KTNSVIAM--DLAISKE  241 (267)
T ss_dssp             -------TTTEEEEE--ETTTTEE
T ss_pred             -------CCCeEEEE--eCCCCCc
Confidence                   46778888  5577865

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.84  E-value=8.9e-08  Score=79.26  Aligned_cols=118  Identities=10%  Similarity=0.096  Sum_probs=83.0

Q ss_pred             EEEc----CCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            5 FLHD----PSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         5 ~afh----P~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      ++++    |+++.+|+.+..+..|.+|..+.+|++...+.....+...        ...+..|.+++||+ ||+++++.+
T Consensus       177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--------~~~p~~i~~d~~G~-l~v~~~~~~  247 (314)
T 1pjx_A          177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH--------EGGADGMDFDEDNN-LLVANWGSS  247 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS--------SCEEEEEEEBTTCC-EEEEEETTT
T ss_pred             EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC--------CCCCCceEECCCCC-EEEEEcCCC
Confidence            5788    9999999999888999999865446665544443322110        03457899999995 889998888


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccc
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWD  160 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd  160 (222)
                      .|.+|+.   .+++++..+...                           ...    |..+++++||++|||++       
T Consensus       248 ~i~~~d~---~~g~~~~~~~~~---------------------------~~~----~~~i~~~~dg~~l~v~~-------  286 (314)
T 1pjx_A          248 HIEVFGP---DGGQPKMRIRCP---------------------------FEK----PSNLHFKPQTKTIFVTE-------  286 (314)
T ss_dssp             EEEEECT---TCBSCSEEEECS---------------------------SSC----EEEEEECTTSSEEEEEE-------
T ss_pred             EEEEEcC---CCCcEeEEEeCC---------------------------CCC----ceeEEECCCCCEEEEEe-------
Confidence            8999854   223333333321                           123    89999999999999998       


Q ss_pred             cccccccccCCcEEEEEEee
Q 027522          161 CQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       161 ~Q~yp~~~s~~~~i~~~dvd  180 (222)
                              .++..|++++++
T Consensus       287 --------~~~~~l~~~~~~  298 (314)
T 1pjx_A          287 --------HENNAVWKFEWQ  298 (314)
T ss_dssp             --------TTTTEEEEEECS
T ss_pred             --------CCCCeEEEEeCC
Confidence                    345678888775

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.83  E-value=5e-08  Score=81.02  Aligned_cols=76  Identities=12%  Similarity=0.124  Sum_probs=54.4

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcc-cccccCCCCCCceeEEEEcCCCCEEEEEeCC----
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK-VQNWILPEMPGLITDFLISLDDRFLYFSNWL----   78 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~-~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg----   78 (222)
                      -++|+|+|+++|+.+.-+.+|.++..+ ++  +....+.+...+ ..+       ..+..|.+||||++||+++..    
T Consensus        47 ~~~~s~dg~~~~v~~~~~~~i~~~d~~-t~--~~~~~~~~~~~~~~~~-------~~~~~~~~spdg~~l~~~~~~~~~~  116 (349)
T 1jmx_B           47 TAMMAPDNRTAYVLNNHYGDIYGIDLD-TC--KNTFHANLSSVPGEVG-------RSMYSFAISPDGKEVYATVNPTQRL  116 (349)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETT-TT--EEEEEEESCCSTTEEE-------ECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred             eeEECCCCCEEEEEeCCCCcEEEEeCC-CC--cEEEEEEccccccccc-------ccccceEECCCCCEEEEEccccccc
Confidence            468999999999999989999998753 34  333444432110 001       224789999999999999965    


Q ss_pred             -------CCcEEEEEecC
Q 027522           79 -------HGDIRQYNIED   89 (222)
Q Consensus        79 -------h~sI~vf~i~d   89 (222)
                             .+.|.+|++..
T Consensus       117 ~~~~~~~~~~i~~~d~~~  134 (349)
T 1jmx_B          117 NDHYVVKPPRLEVFSTAD  134 (349)
T ss_dssp             SSCEEECCCEEEEEEGGG
T ss_pred             ccccccCCCeEEEEECCC
Confidence                   57899998853

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.79  E-value=1.7e-07  Score=77.77  Aligned_cols=106  Identities=14%  Similarity=0.056  Sum_probs=73.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      .+++++ +.+|+.+..+++|.++..+ ++  +..+.+..+..           ..+..+.+||||++||+++...+.|.+
T Consensus         5 ~~~~~~-~~~~v~~~~~~~v~~~d~~-~~--~~~~~~~~~~~-----------~~~~~~~~s~dg~~~~v~~~~~~~i~~   69 (349)
T 1jmx_B            5 PALKAG-HEYMIVTNYPNNLHVVDVA-SD--TVYKSCVMPDK-----------FGPGTAMMAPDNRTAYVLNNHYGDIYG   69 (349)
T ss_dssp             CCCCTT-CEEEEEEETTTEEEEEETT-TT--EEEEEEECSSC-----------CSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccccCC-CEEEEEeCCCCeEEEEECC-CC--cEEEEEecCCC-----------CCCceeEECCCCCEEEEEeCCCCcEEE
Confidence            355654 5568888889999999763 34  33444444310           124789999999999999998999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++.   +++.+..+..++.                  |   ...|..    |+.+++||||++||+++
T Consensus        70 ~d~~---t~~~~~~~~~~~~------------------~---~~~~~~----~~~~~~spdg~~l~~~~  110 (349)
T 1jmx_B           70 IDLD---TCKNTFHANLSSV------------------P---GEVGRS----MYSFAISPDGKEVYATV  110 (349)
T ss_dssp             EETT---TTEEEEEEESCCS------------------T---TEEEEC----SSCEEECTTSSEEEEEE
T ss_pred             EeCC---CCcEEEEEEcccc------------------c---cccccc----ccceEECCCCCEEEEEc
Confidence            9874   3566555554210                  0   011333    89999999999999998

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.78  E-value=7.7e-08  Score=91.63  Aligned_cols=148  Identities=17%  Similarity=0.172  Sum_probs=97.8

Q ss_pred             cCCCCeEEEEeccC------ceEEEEEeCCCCCeeE---EEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC
Q 027522            8 DPSKDIGFVGCALA------STMVRFSKTQDGSWNH---EVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL   78 (222)
Q Consensus         8 hP~g~~aYvv~ELs------stV~~~~~d~~g~~~~---~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg   78 (222)
                      +++|+++|+.+-.+      ..|.++..+.+|.|..   .+.+..    +         ..+..|+++|++++||++++.
T Consensus       201 d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~----~---------~~p~giavdp~~g~LYvtd~~  267 (496)
T 3kya_A          201 ADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA----Y---------KQCNGATIHPINGELYFNSYE  267 (496)
T ss_dssp             BCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE----E---------SCCCCEEECTTTCCEEEEETT
T ss_pred             CCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc----C---------CCceEEEEcCCCCeEEEEECC
Confidence            99999999998775      2477776655677742   122221    1         234788999999999999999


Q ss_pred             CCcEEEEEecCC----CCCeE-----------EEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEEC
Q 027522           79 HGDIRQYNIEDP----KNPVL-----------TGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS  143 (222)
Q Consensus        79 h~sI~vf~i~d~----~~~~L-----------~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~ls  143 (222)
                      ++.|.+|+++..    .++++           ..++..-+                         .+.    +|+.++++
T Consensus       268 ~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~-------------------------~~~----~p~~ia~~  318 (496)
T 3kya_A          268 KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA-------------------------DPS----WEFQIFIH  318 (496)
T ss_dssp             TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS-------------------------SSS----CCEEEEEC
T ss_pred             CCEEEEEecccccccccCceeecccccccccccceeEecC-------------------------CCC----CceEEEEc
Confidence            999999988510    01221           11221100                         122    39999999


Q ss_pred             CCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEec-C--CCCCCCcceeeeecCC
Q 027522          144 LDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDF-E--AEPDGPALAHEMRYPG  213 (222)
Q Consensus       144 pdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf-~--~~~~g~~~~h~~r~~~  213 (222)
                      |+|++||||.               +.+..|.+++.|..+|.+. +....+-. +  +-.+||...-++.+|-
T Consensus       319 p~G~~lYvaD---------------~~~h~I~kid~dg~~~~~~-~~~~~aG~~g~~G~~DG~~~~a~f~~P~  375 (496)
T 3kya_A          319 PTGKYAYFGV---------------INNHYFMRSDYDEIKKEFI-TPYNFVGGYKQSGYRDDVGTEARMNNPC  375 (496)
T ss_dssp             TTSSEEEEEE---------------TTTTEEEEEEEETTTTEEC-CCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred             CCCCEEEEEe---------------CCCCEEEEEecCCCcceec-ccEEecCCCCCCcccCCcccccccCCCe
Confidence            9999999998               5789999999998887542 11122221 1  1226877766777777

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.75  E-value=6.2e-07  Score=74.76  Aligned_cols=112  Identities=13%  Similarity=0.184  Sum_probs=80.7

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCe-eEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSW-NHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~-~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ++|+|+|+.. +.+-.+.+|.+|..+++|++ ...+++ ..     ..      ..+..|.+++||+ |||++  .+.|.
T Consensus       177 i~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~-----~~------~~p~~i~~d~~G~-l~v~~--~~~v~  240 (296)
T 3e5z_A          177 LAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TV-----EP------GKTDGLRVDAGGL-IWASA--GDGVH  240 (296)
T ss_dssp             EEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CC-----SS------SCCCSEEEBTTSC-EEEEE--TTEEE
T ss_pred             EEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eC-----CC------CCCCeEEECCCCC-EEEEc--CCeEE
Confidence            6899999998 88778889999988656777 444444 11     11      3457899999997 88888  67788


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEE-CCCCCEEEEEeCCCCccccc
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL-SLDGKRLYVTNSLFSAWDCQ  162 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~l-spdGk~LyvaNsl~~~wd~Q  162 (222)
                      +|+.   . ++++..+...                            .   + |..+++ +|||++|||++         
T Consensus       241 ~~~~---~-g~~~~~~~~~----------------------------~---~-~~~~~f~~~d~~~L~v~t---------  275 (296)
T 3e5z_A          241 VLTP---D-GDELGRVLTP----------------------------Q---T-TSNLCFGGPEGRTLYMTV---------  275 (296)
T ss_dssp             EECT---T-SCEEEEEECS----------------------------S---C-CCEEEEESTTSCEEEEEE---------
T ss_pred             EECC---C-CCEEEEEECC----------------------------C---C-ceeEEEECCCCCEEEEEc---------
Confidence            8854   2 5565555431                            1   1 778899 69999999998         


Q ss_pred             cccccccCCcEEEEEEeeCCCCCee
Q 027522          163 FYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       163 ~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                              ...++++  ++.+++|+
T Consensus       276 --------~~~l~~~--~~~~~~~~  290 (296)
T 3e5z_A          276 --------STEFWSI--ETNVRGLE  290 (296)
T ss_dssp             --------TTEEEEE--ECSCCBCC
T ss_pred             --------CCeEEEE--Eccccccc
Confidence                    2357777  55777765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.73  E-value=3.2e-07  Score=79.29  Aligned_cols=99  Identities=18%  Similarity=0.275  Sum_probs=72.6

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC-----
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL-----   78 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg-----   78 (222)
                      -++|+|+++++|+.+.-+.+|.+|... +++.  .+.   .+.    .      ..+..+.+||||++||+++++     
T Consensus       216 ~~~~~~~~~~l~~~~~~~~~i~~~d~~-~~~~--~~~---~~~----~------~~~~~~~~~~~g~~l~~~~~~~~~~~  279 (433)
T 3bws_A          216 ILLYDPIRDLVYCSNWISEDISVIDRK-TKLE--IRK---TDK----I------GLPRGLLLSKDGKELYIAQFSASNQE  279 (433)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETT-TTEE--EEE---CCC----C------SEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred             EEEEcCCCCEEEEEecCCCcEEEEECC-CCcE--EEE---ecC----C------CCceEEEEcCCCCEEEEEECCCCccc
Confidence            368999999999999888999998764 3422  222   111    1      336899999999999999984     


Q ss_pred             --CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           79 --HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        79 --h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                        .+.|.+|++..   ++++..+...                            ..    |+.++++|||++||+++
T Consensus       280 ~~dg~i~~~d~~~---~~~~~~~~~~----------------------------~~----~~~~~~~~~g~~l~~~~  321 (433)
T 3bws_A          280 SGGGRLGIYSMDK---EKLIDTIGPP----------------------------GN----KRHIVSGNTENKIYVSD  321 (433)
T ss_dssp             SCCEEEEEEETTT---TEEEEEEEEE----------------------------EC----EEEEEECSSTTEEEEEE
T ss_pred             cCCCeEEEEECCC---CcEEeeccCC----------------------------CC----cceEEECCCCCEEEEEe
Confidence              46788998843   5554443321                            12    88999999999999997

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.67  E-value=2e-06  Score=72.23  Aligned_cols=127  Identities=18%  Similarity=0.188  Sum_probs=82.2

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCC-eeEEE-EEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGS-WNHEV-AISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~-~~~~q-~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      ++|+|+|+++|+.+..+..|.+|..+.+|. +.... .+..   .+.+.      ..+..|.+++||+ ||+++++.+.|
T Consensus       187 i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~---~~~~~------~~~~~i~~d~~G~-l~v~~~~~~~v  256 (333)
T 2dg1_A          187 IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY---YFTGH------EGPDSCCIDSDDN-LYVAMYGQGRV  256 (333)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE---ECCSS------SEEEEEEEBTTCC-EEEEEETTTEE
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE---ecCCC------CCCCceEECCCCC-EEEEEcCCCEE
Confidence            678999999999988888999998854443 32211 1111   01111      3467899999997 89999888889


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ  162 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q  162 (222)
                      .+|+.    +++++..+...+.                       ..|.  ...|..++++|||++||++++       .
T Consensus       257 ~~~d~----~g~~~~~~~~~~~-----------------------~~g~--~~~~~~~~~~~dg~~L~v~~~-------~  300 (333)
T 2dg1_A          257 LVFNK----RGYPIGQILIPGR-----------------------DEGH--MLRSTHPQFIPGTNQLIICSN-------D  300 (333)
T ss_dssp             EEECT----TSCEEEEEECTTG-----------------------GGTC--SCBCCEEEECTTSCEEEEEEE-------C
T ss_pred             EEECC----CCCEEEEEEcCCC-----------------------cccc--ccCcceEEECCCCCEEEEEeC-------c
Confidence            99854    2445444443110                       0010  002899999999999999983       1


Q ss_pred             cccccccCCcEEEEEEee
Q 027522          163 FYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       163 ~yp~~~s~~~~i~~~dvd  180 (222)
                      . .  ...+..+++++.+
T Consensus       301 g-~--~~~~~~l~~~~~~  315 (333)
T 2dg1_A          301 I-E--MGGGSMLYTVNGF  315 (333)
T ss_dssp             G-G--GTCCEEEEEEECS
T ss_pred             c-C--CCCCceEEEEecc
Confidence            0 0  1236788988764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.66  E-value=8.6e-07  Score=75.12  Aligned_cols=98  Identities=14%  Similarity=0.194  Sum_probs=70.4

Q ss_pred             EEEcCCCCeEEEEeccC-----ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC
Q 027522            5 FLHDPSKDIGFVGCALA-----STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH   79 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELs-----stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh   79 (222)
                      ++|+|+++.+|+.+...     +.|.+|..+.++ +...++....+     .      ..+..|.+++||+ ||+++.  
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~-----~------~~pdgi~~d~~G~-lwv~~~--  257 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVP-----D------GLPDGFCVDRGGW-LWSSSG--  257 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCS-----S------SCCCSEEECTTSC-EEECCS--
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECC-----C------CCCCeEEECCCCC-EEEecC--
Confidence            68999999999998863     789999876443 44333332211     1      3356799999999 999983  


Q ss_pred             CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           80 GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        80 ~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +.|.+|+.    .++++.++.+.                            ..    |.++++++||++||+++
T Consensus       258 ~gv~~~~~----~g~~~~~~~~~----------------------------~~----~~~~~f~~d~~~L~it~  295 (305)
T 3dr2_A          258 TGVCVFDS----DGQLLGHIPTP----------------------------GT----ASNCTFDQAQQRLFITG  295 (305)
T ss_dssp             SEEEEECT----TSCEEEEEECS----------------------------SC----CCEEEECTTSCEEEEEE
T ss_pred             CcEEEECC----CCCEEEEEECC----------------------------Cc----eeEEEEeCCCCEEEEEc
Confidence            45777743    35666666541                            12    88999999999999998

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.66  E-value=5.7e-07  Score=77.23  Aligned_cols=134  Identities=10%  Similarity=0.025  Sum_probs=83.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC-CCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW-LHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR-gh~sI~   83 (222)
                      ++++|+|+ +||....+.+|.+|..  +|+......+...  ...|.. ...-+.+..|.++|++..|||++. +.+.|.
T Consensus        96 ia~d~~g~-l~v~d~~~~~v~~~~~--~g~~~~~~~~~~~--~~~g~~-~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~  169 (329)
T 3fvz_A           96 LSIDTDGN-YWVTDVALHQVFKLDP--HSKEGPLLILGRS--MQPGSD-QNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV  169 (329)
T ss_dssp             EEECTTSC-EEEEETTTTEEEEECT--TCSSCCSEEESBT--TBCCCS-TTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred             EEECCCCC-EEEEECCCCEEEEEeC--CCCeEEEEEeccc--CCCCCC-ccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence            68999999 8999888889988864  4543222222111  001100 001145799999998888999995 889999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccc
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQF  163 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~  163 (222)
                      +|+.    .++++..+...|.-               ..+..    +.  -..|+.++++|++.+||||+          
T Consensus       170 ~~~~----~g~~~~~~~~~g~~---------------~~~~~----~~--~~~p~gia~d~~~g~l~v~d----------  214 (329)
T 3fvz_A          170 QFSP----SGKFVTQWGEESSG---------------SSPRP----GQ--FSVPHSLALVPHLDQLCVAD----------  214 (329)
T ss_dssp             EECT----TSCEEEEECEECCS---------------SSCCT----TE--ESCEEEEEEETTTTEEEEEE----------
T ss_pred             EEcC----CCCEEEEeccCCCC---------------CCCCC----cc--cCCCcEEEEECCCCEEEEEE----------
Confidence            9963    25554443322210               00000    00  01399999999988999999          


Q ss_pred             ccccccCCcEEEEEEeeCCCCCe
Q 027522          164 YPELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       164 yp~~~s~~~~i~~~dvd~~~G~l  186 (222)
                           +.+..|.++|.  ++|.+
T Consensus       215 -----~~~~~I~~~~~--~~G~~  230 (329)
T 3fvz_A          215 -----RENGRIQCFKT--DTKEF  230 (329)
T ss_dssp             -----TTTTEEEEEET--TTCCE
T ss_pred             -----CCCCEEEEEEC--CCCcE
Confidence                 35677777755  46655

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.61  E-value=5.9e-07  Score=82.45  Aligned_cols=120  Identities=15%  Similarity=0.231  Sum_probs=79.2

Q ss_pred             EEEcCCCCeEEEEeccC----ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            5 FLHDPSKDIGFVGCALA----STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELs----stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      ++++|+|+ +||.+..+    ..+..+..  ++.+.....+.    .+         +.+.+|.++|++..||++.+..+
T Consensus       187 iavd~dG~-lyVad~~~~~~~~gv~~~~~--~~~~~~~~~~~----~~---------~~P~giavd~~~G~lyv~d~~~~  250 (433)
T 4hw6_A          187 VNFTLNGD-MVVVDDQSSDTNTGIYLFTR--ASGFTERLSLC----NA---------RGAKTCAVHPQNGKIYYTRYHHA  250 (433)
T ss_dssp             EEECTTCC-EEEEECCSCTTSEEEEEECG--GGTTCCEEEEE----EC---------SSBCCCEECTTTCCEEECBTTCS
T ss_pred             EEECCCCC-EEEEcCCCCcccceEEEEEC--CCCeecccccc----cc---------CCCCEEEEeCCCCeEEEEECCCC
Confidence            67899999 99988643    22444432  33333222211    11         44588999998888999999988


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccc
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWD  160 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd  160 (222)
                      .|.+|+.   ..++++..+...|                           ..  +.|..++++|+|++||||+       
T Consensus       251 ~V~~~d~---~~g~~~~~~~~~~---------------------------~~--~~~~~ia~dpdG~~LYvad-------  291 (433)
T 4hw6_A          251 MISSYDP---ATGTLTEEEVMMD---------------------------TK--GSNFHIVWHPTGDWAYIIY-------  291 (433)
T ss_dssp             EEEEECT---TTCCEEEEEEECS---------------------------CC--SSCEEEEECTTSSEEEEEE-------
T ss_pred             EEEEEEC---CCCeEEEEEeccC---------------------------CC--CCcccEEEeCCCCEEEEEe-------
Confidence            8887754   3344422332211                           10  1256799999999999999       


Q ss_pred             cccccccccCCcEEEEEEeeCCCCCee
Q 027522          161 CQFYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       161 ~Q~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                              +.+..|.+++.|..+|.+.
T Consensus       292 --------~~~~~I~~~~~d~~~~~~~  310 (433)
T 4hw6_A          292 --------NGKHCIYRVDYNRETGKLA  310 (433)
T ss_dssp             --------TTTTEEEEEEBCTTTCCBC
T ss_pred             --------CCCCEEEEEeCCCCCcccC
Confidence                    4688999999988888663

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.60  E-value=2.4e-06  Score=73.33  Aligned_cols=86  Identities=17%  Similarity=0.195  Sum_probs=57.1

Q ss_pred             EEEcCCCCeEEEEec-cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCA-LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~E-LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ++++|+...+||.+- .++.|.+|.  .+|++.  ..+......  +...+..-..+..|.++||+..|||++++.+.|.
T Consensus       148 ia~~~~~g~lyv~d~~~~~~I~~~~--~~g~~~--~~~~~~g~~--~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~  221 (329)
T 3fvz_A          148 VAVEPSTGAVFVSDGYCNSRIVQFS--PSGKFV--TQWGEESSG--SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQ  221 (329)
T ss_dssp             EEECTTTCCEEEEECSSCCEEEEEC--TTSCEE--EEECEECCS--SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEeCCCCeEEEEeCCCCCeEEEEc--CCCCEE--EEeccCCCC--CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEE
Confidence            789997778899985 788899886  356542  222211100  0000000134799999999999999999999999


Q ss_pred             EEEecCCCCCeEEEEE
Q 027522           84 QYNIEDPKNPVLTGQI   99 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v   99 (222)
                      +|+.+   +++++..+
T Consensus       222 ~~~~~---~G~~~~~~  234 (329)
T 3fvz_A          222 CFKTD---TKEFVREI  234 (329)
T ss_dssp             EEETT---TCCEEEEE
T ss_pred             EEECC---CCcEEEEE
Confidence            99874   35555554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.60  E-value=1.7e-06  Score=75.00  Aligned_cols=123  Identities=12%  Similarity=0.130  Sum_probs=75.1

Q ss_pred             eEEEcCCCCeEEEEecc-----CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC-
Q 027522            4 RFLHDPSKDIGFVGCAL-----ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW-   77 (222)
Q Consensus         4 r~afhP~g~~aYvv~EL-----sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR-   77 (222)
                      .++++|+|+ +||+..-     +.+|.+|..+ +|+  ..+++.++......      ...+.+|++++++.++|+++. 
T Consensus        71 gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~-tg~--~~~~~~~~~~~~~~------~~~~~~v~vd~~~g~~yvtd~~  140 (343)
T 2qe8_A           71 GIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTL-NNQ--LSRVIYLPPPITLS------NSFVNDLAVDLIHNFVYISDPA  140 (343)
T ss_dssp             EEEECSSSE-EEEEECHHHHTSCCEEEEEETT-TTE--EEEEEECCTTTSCT------TCCCCEEEEETTTTEEEEEECC
T ss_pred             EEEEcCCCc-EEEEcCCCCcCCCCeEEEEECC-CCe--EEEEEECChhhccc------ccccceEEEecCCCEEEEEcCc
Confidence            578999975 8888754     4788888753 454  34555554221111      134589999999999999998 


Q ss_pred             --CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCccc------------CCCCeeEEEC
Q 027522           78 --LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL------------RGGPQMIQLS  143 (222)
Q Consensus        78 --gh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~------------~ggPr~~~ls  143 (222)
                        +.+.|.+|+...   +++...+  .+....            ...|-...+.|+.+            ..+|.-+++|
T Consensus       141 ~~~~~~i~v~d~~~---g~~~r~~--~~~~~~------------~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s  203 (343)
T 2qe8_A          141 PDDKAALIRVDLQT---GLAARVL--QGYPGI------------APEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLD  203 (343)
T ss_dssp             SGGGCEEEEEETTT---CCEEEEC--TTCTTT------------SCCSCCCEETTEECBEECTTSCEECCCCCEEEEEEC
T ss_pred             cCCCCeEEEEECCC---CCEEEEe--cCCCcc------------cccccceeECCEEEEeccCCCceeceecccceeEec
Confidence              888999998742   3332211  110000            00000011122221            2358899999


Q ss_pred             CCCCEEEEEe
Q 027522          144 LDGKRLYVTN  153 (222)
Q Consensus       144 pdGk~LyvaN  153 (222)
                      |||++||+++
T Consensus       204 ~dg~~ly~~~  213 (343)
T 2qe8_A          204 AENEWLYLSP  213 (343)
T ss_dssp             TTSCEEEEEE
T ss_pred             cCCCEEEEEe
Confidence            9999999998

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.58  E-value=1.1e-06  Score=79.40  Aligned_cols=135  Identities=12%  Similarity=0.034  Sum_probs=81.3

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEec-Ccccc-cccCCCCCCceeEEEEcCCCCEEEEEeC-CCC
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVK-SLKVQ-NWILPEMPGLITDFLISLDDRFLYFSNW-LHG   80 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~-p~~~~-g~~~~~~~~~~adI~iSpDgrfLYvSnR-gh~   80 (222)
                      .++|+|++..+|+.....++|.++..  +|...  ..+-.. ...+. |......-+.+..|.+++||+ ||++++ +.+
T Consensus       271 ~ia~~p~~g~lyv~d~~~~~I~~~~~--~g~~~--~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~  345 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQNLSSVYKITP--DGECE--WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGY  345 (409)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECT--TCCEE--EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTC
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEec--CCCEE--EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCC
Confidence            58999999999999999999999965  34422  122111 11110 000000014579999999999 999999 999


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccc
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWD  160 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd  160 (222)
                      .|++|++.+   +++....-.++..         +..+  ..+.  ..+=.    .|+.++++++| .||||+       
T Consensus       346 ~I~~~~~~~---G~v~~~~g~~~~~---------g~~~--g~~~--~~~~~----~P~giavd~~g-~lyVad-------  397 (409)
T 3hrp_A          346 CLRKLDILD---GYVSTVAGQVDVA---------SQID--GTPL--EATFN----YPYDICYDGEG-GYWIAE-------  397 (409)
T ss_dssp             EEEEEETTT---TEEEEEEECTTCB---------SCCC--BSTT--TCCBS----SEEEEEECSSS-EEEEEE-------
T ss_pred             EEEEEECCC---CEEEEEeCCCCCC---------CcCC--CChh--ceEeC----CceEEEEcCCC-CEEEEE-------
Confidence            999997633   4442111111100         0000  0000  00012    39999999995 899999       


Q ss_pred             cccccccccCCcEEEEEEe
Q 027522          161 CQFYPELKEKGSHMLQIDV  179 (222)
Q Consensus       161 ~Q~yp~~~s~~~~i~~~dv  179 (222)
                              ..+..|.++++
T Consensus       398 --------~~n~~Ir~i~~  408 (409)
T 3hrp_A          398 --------AWGKAIRKYAV  408 (409)
T ss_dssp             --------STTCEEEEEEE
T ss_pred             --------CCCCeEEEEEe
Confidence                    45778888765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.57  E-value=1.3e-06  Score=75.47  Aligned_cols=105  Identities=14%  Similarity=0.234  Sum_probs=75.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeC-CCC-CeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKT-QDG-SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d-~~g-~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      ++|+|+|+.+|+.+..++.|+++..+ ++| .+...+++...+.   .      ...+..|.+++||+ ||+++++.+.|
T Consensus       184 i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~---~------~~~p~gi~~d~~G~-lwva~~~~~~v  253 (326)
T 2ghs_A          184 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG---I------KGGMDGSVCDAEGH-IWNARWGEGAV  253 (326)
T ss_dssp             EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT---S------SSEEEEEEECTTSC-EEEEEETTTEE
T ss_pred             eEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC---C------CCCCCeeEECCCCC-EEEEEeCCCEE
Confidence            67899999999999888999999875 456 5433333322111   0      13467899999996 89999988888


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEEC-CCCCEEEEEeC
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS-LDGKRLYVTNS  154 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~ls-pdGk~LyvaNs  154 (222)
                      .+|+.    +++++..+...                           +..    |..++++ +||++|||+++
T Consensus       254 ~~~d~----~g~~~~~i~~~---------------------------~~~----~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          254 DRYDT----DGNHIARYEVP---------------------------GKQ----TTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEECT----TCCEEEEEECS---------------------------CSB----EEEEEEESTTSCEEEEEEB
T ss_pred             EEECC----CCCEEEEEECC---------------------------CCC----cEEEEEecCCCCEEEEEec
Confidence            88844    35555555431                           223    8899998 99999999973

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.56  E-value=5.5e-07  Score=79.79  Aligned_cols=72  Identities=7%  Similarity=0.014  Sum_probs=55.9

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++++.+..+++|.+|.....+..  ...+...    .        ..+..|.+||+++++++|+..++.|.
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~--~~~~~~h----~--------~~v~~i~~sp~~~~~l~s~~~d~~i~  347 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLK--LHSFESH----K--------DEIFQVQWSPHNETILASSGTDRRLH  347 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSC--SEEEECC----S--------SCEEEEEECSSCTTEEEEEETTSCCE
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC--eEEeecC----C--------CCEEEEEECCCCCCEEEEEeCCCcEE
Confidence            47899999999999999999999987532221  1111110    1        45689999999999999999999999


Q ss_pred             EEEecC
Q 027522           84 QYNIED   89 (222)
Q Consensus        84 vf~i~d   89 (222)
                      +|++..
T Consensus       348 iwd~~~  353 (430)
T 2xyi_A          348 VWDLSK  353 (430)
T ss_dssp             EEEGGG
T ss_pred             EEeCCC
Confidence            999965

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.56  E-value=1.2e-06  Score=77.76  Aligned_cols=112  Identities=14%  Similarity=0.126  Sum_probs=80.1

Q ss_pred             cCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 027522            8 DPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI   87 (222)
Q Consensus         8 hP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i   87 (222)
                      .+.++.+|+++.-++.+++|..+   +++.+..+..++   +||            -|++||+.||+|+ +.+.|.++  
T Consensus       102 t~~g~~Ly~ltw~~~~v~V~D~~---Tl~~~~ti~~~~---eGw------------GLt~Dg~~L~vSd-Gs~~l~~i--  160 (268)
T 3nok_A          102 ASDGERLYQLTWTEGLLFTWSGM---PPQRERTTRYSG---EGW------------GLCYWNGKLVRSD-GGTMLTFH--  160 (268)
T ss_dssp             EECSSCEEEEESSSCEEEEEETT---TTEEEEEEECSS---CCC------------CEEEETTEEEEEC-SSSEEEEE--
T ss_pred             EEeCCEEEEEEccCCEEEEEECC---cCcEEEEEeCCC---cee------------EEecCCCEEEEEC-CCCEEEEE--
Confidence            45688999999999999999753   567777777643   344            2447899999999 68888877  


Q ss_pred             cCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccccccc
Q 027522           88 EDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPEL  167 (222)
Q Consensus        88 ~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~  167 (222)
                       |+.+.+.+++|.++..                         |+. ...++.+... +| +|||++              
T Consensus       161 -Dp~T~~v~~~I~V~~~-------------------------g~~-v~~lNeLe~~-dG-~lyanv--------------  197 (268)
T 3nok_A          161 -EPDGFALVGAVQVKLR-------------------------GQP-VELINELECA-NG-VIYANI--------------  197 (268)
T ss_dssp             -CTTTCCEEEEEECEET-------------------------TEE-CCCEEEEEEE-TT-EEEEEE--------------
T ss_pred             -cCCCCeEEEEEEeCCC-------------------------Ccc-cccccccEEe-CC-EEEEEE--------------
Confidence             5677888888887321                         111 1124555555 66 799777              


Q ss_pred             ccCCcEEEEEEeeCCCCCe
Q 027522          168 KEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       168 ~s~~~~i~~~dvd~~~G~l  186 (222)
                       ..+..|.+|  |+.||+.
T Consensus       198 -w~s~~I~vI--Dp~TG~V  213 (268)
T 3nok_A          198 -WHSSDVLEI--DPATGTV  213 (268)
T ss_dssp             -TTCSEEEEE--CTTTCBE
T ss_pred             -CCCCeEEEE--eCCCCcE
Confidence             245688888  7899986

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.55  E-value=8.9e-07  Score=78.30  Aligned_cols=113  Identities=15%  Similarity=0.202  Sum_probs=81.0

Q ss_pred             cCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 027522            8 DPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI   87 (222)
Q Consensus         8 hP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i   87 (222)
                      .+.++.+|+++.-++.++++..+   +++.+..+..++   +||            .+++||+.||+|+ +.+.|.++  
T Consensus        93 t~~g~~ly~ltw~~~~v~v~D~~---t~~~~~ti~~~~---eG~------------glt~dg~~L~~Sd-Gs~~i~~i--  151 (262)
T 3nol_A           93 SDWKDKIVGLTWKNGLGFVWNIR---NLRQVRSFNYDG---EGW------------GLTHNDQYLIMSD-GTPVLRFL--  151 (262)
T ss_dssp             EEETTEEEEEESSSSEEEEEETT---TCCEEEEEECSS---CCC------------CEEECSSCEEECC-SSSEEEEE--
T ss_pred             EEeCCEEEEEEeeCCEEEEEECc---cCcEEEEEECCC---Cce------------EEecCCCEEEEEC-CCCeEEEE--
Confidence            44688999999999999999763   466677777653   444            3557999999999 57888877  


Q ss_pred             cCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccccccc
Q 027522           88 EDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPEL  167 (222)
Q Consensus        88 ~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~  167 (222)
                       |+.+.+.+++|.++.                         .|+. ...++.+... +| +|||++              
T Consensus       152 -Dp~T~~v~~~I~V~~-------------------------~g~~-~~~lNELe~~-~G-~lyan~--------------  188 (262)
T 3nol_A          152 -DPESLTPVRTITVTA-------------------------HGEE-LPELNELEWV-DG-EIFANV--------------  188 (262)
T ss_dssp             -CTTTCSEEEEEECEE-------------------------TTEE-CCCEEEEEEE-TT-EEEEEE--------------
T ss_pred             -cCCCCeEEEEEEecc-------------------------CCcc-ccccceeEEE-CC-EEEEEE--------------
Confidence             667788888888741                         1222 2235556665 66 799887              


Q ss_pred             ccCCcEEEEEEeeCCCCCee
Q 027522          168 KEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       168 ~s~~~~i~~~dvd~~~G~l~  187 (222)
                       ..+..|.+|  |+.||+..
T Consensus       189 -w~~~~I~vI--Dp~tG~V~  205 (262)
T 3nol_A          189 -WQTNKIVRI--DPETGKVT  205 (262)
T ss_dssp             -TTSSEEEEE--CTTTCBEE
T ss_pred             -ccCCeEEEE--ECCCCcEE
Confidence             245678888  78999863

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=1.2e-06  Score=80.02  Aligned_cols=139  Identities=12%  Similarity=0.076  Sum_probs=83.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEec--Ccccc-cccCCCCCCcee-EEEEcC-------CCCEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVK--SLKVQ-NWILPEMPGLIT-DFLISL-------DDRFL   72 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~--p~~~~-g~~~~~~~~~~a-dI~iSp-------DgrfL   72 (222)
                      ++|+|+|+++||..+.++.|.++.++. .+.+...+++.-.  ...+. |......-+.+. .|.+..       +...|
T Consensus       275 ia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~l  354 (430)
T 3tc9_A          275 IQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDF  354 (430)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEE
T ss_pred             EEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeE
Confidence            799999999999999999999998863 3555444444321  11111 100000013355 566654       24589


Q ss_pred             EEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCc-c---cCCCCeeEEECCCCCE
Q 027522           73 YFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGH-R---LRGGPQMIQLSLDGKR  148 (222)
Q Consensus        73 YvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~-~---~~ggPr~~~lspdGk~  148 (222)
                      ||++++++.|++|+   + .+++....-. |..                 .......|. .   --..|+.++++|++.+
T Consensus       355 yvaD~~n~~I~~i~---~-~G~v~~~~g~-g~~-----------------~~~G~~dG~~~~~~~~~~P~giavd~~~g~  412 (430)
T 3tc9_A          355 YFCDRENHCIRILT---P-QGRVTTFAGR-GSN-----------------GTSGYNDGDLRQEARFNHPEGIVYDEEREC  412 (430)
T ss_dssp             EEEEGGGTEEEEEC---T-TSEEEEEEEC-CTT-----------------SSSSCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred             EEEECCCcEEEEEC---C-CCcEEEEEeC-CCC-----------------CCCcccCCCchhhcEeCCCcEEEEECCCCE
Confidence            99999999998875   2 2444211111 000                 000000010 0   0013999999998889


Q ss_pred             EEEEeCCCCccccccccccccCCcEEEEEEee
Q 027522          149 LYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       149 LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd  180 (222)
                      ||||+               +.+..|.+++.+
T Consensus       413 lyVaD---------------~~n~rIr~i~~e  429 (430)
T 3tc9_A          413 FFIGD---------------RENRRIRKIGYE  429 (430)
T ss_dssp             EEEEE---------------GGGTEEEEEEEC
T ss_pred             EEEEE---------------CCCCeEEEEccC
Confidence            99999               468888888764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.53  E-value=2.2e-06  Score=74.42  Aligned_cols=101  Identities=15%  Similarity=0.175  Sum_probs=70.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC-CcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH-GDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh-~sI~   83 (222)
                      +++++.++.+|+......+|.++..+  |+.. ...+.   ..   -      ..+.+|+++|++++||+++++. +.|.
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~--g~~~-~~~~~---~~---~------~~P~~iavdp~~g~ly~~d~~~~~~I~  146 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTK--GVKR-KTLFR---EN---G------SKPRAIVVDPVHGFMYWTDWGTPAKIK  146 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT--SSSE-EEEEE---CT---T------CCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCC--CCce-EEEEE---CC---C------CCcceEEeCCCCCEEEEEccCCCCeEE
Confidence            57788889999999999999998764  4321 11111   11   1      3568999999999999999986 7888


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                      +++.+  ++...  .+-..                          +...    |+-+++++++++||+|++
T Consensus       147 ~~~~d--G~~~~--~~~~~--------------------------~~~~----P~gla~d~~~~~lY~~D~  183 (316)
T 1ijq_A          147 KGGLN--GVDIY--SLVTE--------------------------NIQW----PNGITLDLLSGRLYWVDS  183 (316)
T ss_dssp             EEETT--SCCEE--EEECS--------------------------SCSC----EEEEEEETTTTEEEEEET
T ss_pred             EEcCC--CCCeE--EEEEC--------------------------CCCC----ceEEEEeccCCEEEEEEC
Confidence            88763  22211  11110                          1223    999999999999999994

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.53  E-value=9.7e-07  Score=79.77  Aligned_cols=130  Identities=15%  Similarity=0.178  Sum_probs=79.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCcee-EEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLIT-DFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~a-dI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ++++|+..++|+ +..+.+|.++..+ .+.....+  .+......++       .+. +|+++|++.+||++++..+.|.
T Consensus       224 iav~p~~g~lyv-~d~~~~I~~~d~~-~~~~~~~~--~~~~~g~~~~-------~P~~~ia~~p~~g~lyv~d~~~~~I~  292 (409)
T 3hrp_A          224 VALDETEEWLYF-VDSNKNFGRFNVK-TQEVTLIK--QLELSGSLGT-------NPGPYLIYYFVDSNFYMSDQNLSSVY  292 (409)
T ss_dssp             CEECTTSSEEEE-ECTTCEEEEEETT-TCCEEEEE--ECCCCSCCCC-------SSCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEeCCCCeEEE-EECCCcEEEEECC-CCCEEEEe--cccccCCCCC-------CccccEEEeCCCCEEEEEeCCCCEEE
Confidence            578998888999 6668889998764 33332221  1111111111       124 9999999999999999999999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCc---ccCCCCeeEEECCCCCEEEEEeCCCCccc
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGH---RLRGGPQMIQLSLDGKRLYVTNSLFSAWD  160 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~---~~~ggPr~~~lspdGk~LyvaNsl~~~wd  160 (222)
                      +|+.+    +++.  +..|.. .               .+..  ..|.   .--..|+.++++++|+ ||||+       
T Consensus       293 ~~~~~----g~~~--~~~g~~-~---------------~~g~--~dg~~~~~~~~~P~gia~d~dG~-lyvad-------  340 (409)
T 3hrp_A          293 KITPD----GECE--WFCGSA-T---------------QKTV--QDGLREEALFAQPNGMTVDEDGN-FYIVD-------  340 (409)
T ss_dssp             EECTT----CCEE--EEEECT-T---------------CCSC--BCEEGGGCBCSSEEEEEECTTCC-EEEEE-------
T ss_pred             EEecC----CCEE--EEEeCC-C---------------CCCc--CCCcccccEeCCCeEEEEeCCCC-EEEEe-------
Confidence            88652    2221  111100 0               0000  0000   0012499999999998 99999       


Q ss_pred             ccccccccc-CCcEEEEEEeeCCCCCee
Q 027522          161 CQFYPELKE-KGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       161 ~Q~yp~~~s-~~~~i~~~dvd~~~G~l~  187 (222)
                              + .+..|.++|.  .+|.++
T Consensus       341 --------~~~~~~I~~~~~--~~G~v~  358 (409)
T 3hrp_A          341 --------GFKGYCLRKLDI--LDGYVS  358 (409)
T ss_dssp             --------TTTTCEEEEEET--TTTEEE
T ss_pred             --------CCCCCEEEEEEC--CCCEEE
Confidence                    5 5788888854  567764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.51  E-value=4.5e-06  Score=73.99  Aligned_cols=139  Identities=10%  Similarity=0.015  Sum_probs=83.3

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecC-------------cccccccCCCCCCceeEEEEcCCCC
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKS-------------LKVQNWILPEMPGLITDFLISLDDR   70 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p-------------~~~~g~~~~~~~~~~adI~iSpDgr   70 (222)
                      .++|+ +++++++.+ .+++|.+|... +|+.  .+.+....             ..+............+.|..+||++
T Consensus       246 ~~~~s-d~~~l~s~~-~d~~v~vwd~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  320 (450)
T 2vdu_B          246 SICCG-KDYLLLSAG-GDDKIFAWDWK-TGKN--LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP  320 (450)
T ss_dssp             EEEEC-STTEEEEEE-SSSEEEEEETT-TCCE--EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred             EEEEC-CCCEEEEEe-CCCeEEEEECC-CCcE--eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence            46788 999998887 58899999874 3433  33333210             0000000001124578999999999


Q ss_pred             EEEEEeCCCCcEEEEEecCC--CCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCE
Q 027522           71 FLYFSNWLHGDIRQYNIEDP--KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKR  148 (222)
Q Consensus        71 fLYvSnRgh~sI~vf~i~d~--~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~  148 (222)
                      +||++++.++.|.+|++.+.  ...+++..+...                                +.++.|+++|++.+
T Consensus       321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--------------------------------~~v~~~~~~~~~~~  368 (450)
T 2vdu_B          321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--------------------------------YNVISLSAHNDEFQ  368 (450)
T ss_dssp             EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--------------------------------SCEEEEEEETTEEE
T ss_pred             EEEEEECCCCeEEEEEeccCCCCceeeccEeccC--------------------------------CceEEEEecCCcEE
Confidence            99999999999999999322  222444444321                                23889999996433


Q ss_pred             EEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeec
Q 027522          149 LYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAIN  189 (222)
Q Consensus       149 LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~  189 (222)
                      +.++|        +.-|..-++...++.+  +.++|.++++
T Consensus       369 v~~~~--------~~~~~~~~~~i~v~~~--~~~~~~~~~~  399 (450)
T 2vdu_B          369 VTLDN--------KESSGVQKNFAKFIEY--NLNENSFVVN  399 (450)
T ss_dssp             EEECC--------TTCCSSCCCSEEEEEE--ETTTTEEEEC
T ss_pred             EEEec--------ccCCCCCCcceEEEEE--EcCCCeEEEc
Confidence            33333        4322222334577766  5578877654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.50  E-value=1.2e-06  Score=77.89  Aligned_cols=132  Identities=13%  Similarity=0.129  Sum_probs=77.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC---CCEEEEEeCCC--
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD---DRFLYFSNWLH--   79 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD---grfLYvSnRgh--   79 (222)
                      ++|+|+|+ +|| +|..+.|.++.   +|+.+.  +..++ ....+.      ..+..|+++||   +++|||++...  
T Consensus        36 ia~~pdG~-l~V-~e~~g~I~~i~---~g~~~~--~~~~~-v~~~g~------~~p~gia~~pdf~~~g~lYv~~~~~~~  101 (352)
T 2ism_A           36 LAFLPDGG-MLI-AERPGRIRLFR---EGRLST--YAELS-VYHRGE------SGLLGLALHPRFPQEPYVYAYRTVAEG  101 (352)
T ss_dssp             EEECTTSC-EEE-EETTTEEEEEE---TTEEEE--EEECC-CCCSTT------CSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred             EEEcCCCe-EEE-EeCCCeEEEEE---CCCccE--eecce-EeecCC------CCceeEEECCCCCCCCEEEEEEecCCC
Confidence            68999998 555 46789999997   354332  22332 112222      45799999999   99999999864  


Q ss_pred             ---CcEEEEEecCCCCCeEEE-EEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCC
Q 027522           80 ---GDIRQYNIEDPKNPVLTG-QIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSL  155 (222)
Q Consensus        80 ---~sI~vf~i~d~~~~~L~~-~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl  155 (222)
                         +.|..|+.++   .++.. ++-..+ +                 |.. .-...    .|+.++++||| +|||++.-
T Consensus       102 ~~~~~v~r~~~~~---~~~~~~~~l~~~-~-----------------p~~-~~~~h----~~~~l~~~pdG-~Lyv~~G~  154 (352)
T 2ism_A          102 GLRNQVVRLRHLG---ERGVLDRVVLDG-I-----------------PAR-PHGLH----SGGRIAFGPDG-MLYVTTGE  154 (352)
T ss_dssp             SSEEEEEEEEECS---SCEEEEEEEEEE-E-----------------CCC-TTCCC----CCCCEEECTTS-CEEEECCC
T ss_pred             CCccEEEEEEeCC---CCcCceEEEEEe-C-----------------CCC-CCCCc----CCceEEECCCC-CEEEEECC
Confidence               6788888753   22321 111100 0                 100 00122    38899999999 69999731


Q ss_pred             CCc-cccccccccccCCcEEEEEEee
Q 027522          156 FSA-WDCQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       156 ~~~-wd~Q~yp~~~s~~~~i~~~dvd  180 (222)
                      ... -..|+   ..+....|+|+|.|
T Consensus       155 ~~~~~~~~d---~~~~~g~I~ri~~d  177 (352)
T 2ism_A          155 VYERELAQD---LASLGGKILRLTPE  177 (352)
T ss_dssp             TTCGGGGGC---TTCSSSEEEEECTT
T ss_pred             CCCCccccC---CCCCceEEEEEcCC
Confidence            111 01121   11235789998665

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.48  E-value=2.4e-06  Score=72.88  Aligned_cols=115  Identities=10%  Similarity=0.078  Sum_probs=67.9

Q ss_pred             CeEEEEeccCceEEEEEeCCCCCeeEEEEEEecC--cccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522           12 DIGFVGCALASTMVRFSKTQDGSWNHEVAISVKS--LKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        12 ~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p--~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d   89 (222)
                      ..+|+..+-...|+++..+ .++.+.........  ....+.      ..+..|  |+||++|||+++..+.|.+|+++.
T Consensus       128 ~~~~v~d~~~g~i~~~d~~-~~~~~v~~~~~~~~~~~~~~~~------~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          128 TQYLTADSYRGAIWLIDVV-QPSGSIWLEHPMLARSNSESVF------PAANGL--KRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             SEEEEEETTTTEEEEEETT-TTEEEEEEECGGGSCSSTTCCS------CSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred             CcEEEEECCCCeEEEEeCC-CCcEeEEEECCccccccccCCC------CcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence            3578877767778887643 22211111000000  000111      234555  999999999999999999999953


Q ss_pred             CCCCeEE-EEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccccccc
Q 027522           90 PKNPVLT-GQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELK  168 (222)
Q Consensus        90 ~~~~~L~-~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~  168 (222)
                      .  +++. .++..                           .+.    .|+.|+++++|+ |||||        .      
T Consensus       199 ~--g~~~~~~~~~---------------------------~~~----~P~gi~vd~dG~-l~va~--------~------  230 (306)
T 2p4o_A          199 T--DKPGEPEIFV---------------------------EQT----NIDDFAFDVEGN-LYGAT--------H------  230 (306)
T ss_dssp             T--SCBCCCEEEE---------------------------ESC----CCSSEEEBTTCC-EEEEC--------B------
T ss_pred             C--CCCCccEEEe---------------------------ccC----CCCCeEECCCCC-EEEEe--------C------
Confidence            2  3220 01111                           122    399999999995 89999        3      


Q ss_pred             cCCcEEEEEEeeCCCCCee
Q 027522          169 EKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       169 s~~~~i~~~dvd~~~G~l~  187 (222)
                       .+..|.++  |++ |.+.
T Consensus       231 -~~~~V~~~--~~~-G~~~  245 (306)
T 2p4o_A          231 -IYNSVVRI--APD-RSTT  245 (306)
T ss_dssp             -TTCCEEEE--CTT-CCEE
T ss_pred             -CCCeEEEE--CCC-CCEE
Confidence             45667777  443 7653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.46  E-value=4.3e-06  Score=68.87  Aligned_cols=99  Identities=10%  Similarity=0.106  Sum_probs=68.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC-cEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG-DIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~-sI~   83 (222)
                      ++++|+|+ +||.+..++.|.+|..  +|+.  ...+  ..   .+.     ...+..|.+++||+ |||++++.+ .|.
T Consensus       169 i~~~~~g~-l~v~~~~~~~i~~~~~--~g~~--~~~~--~~---~g~-----~~~p~~i~~d~~G~-l~v~~~~~~~~i~  232 (286)
T 1q7f_A          169 VVVNDKQE-IFISDNRAHCVKVFNY--EGQY--LRQI--GG---EGI-----TNYPIGVGINSNGE-ILIADNHNNFNLT  232 (286)
T ss_dssp             EEECSSSE-EEEEEGGGTEEEEEET--TCCE--EEEE--SC---TTT-----SCSEEEEEECTTCC-EEEEECSSSCEEE
T ss_pred             EEECCCCC-EEEEECCCCEEEEEcC--CCCE--EEEE--cc---CCc-----cCCCcEEEECCCCC-EEEEeCCCCEEEE
Confidence            68899987 8999988999999975  3432  1222  11   110     04568999999995 899998886 999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|+.    .++++..+..+..                         ..    .|+.++++|||+ |||++
T Consensus       233 ~~~~----~g~~~~~~~~~~~-------------------------~~----~~~~i~~~~~g~-l~vs~  268 (286)
T 1q7f_A          233 IFTQ----DGQLISALESKVK-------------------------HA----QCFDVALMDDGS-VVLAS  268 (286)
T ss_dssp             EECT----TSCEEEEEEESSC-------------------------CS----CEEEEEEETTTE-EEEEE
T ss_pred             EECC----CCCEEEEEcccCC-------------------------CC----cceeEEECCCCc-EEEEC
Confidence            9963    2445544444211                         12    288999999995 99998

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.45  E-value=2.8e-06  Score=75.18  Aligned_cols=112  Identities=11%  Similarity=0.156  Sum_probs=78.7

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC-CcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH-GDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh-~sI~   83 (222)
                      +++++.+..+|+.......|.++..+  |+..  .++  ....   -      ..+.+|+++|++++||++.|+. +.|.
T Consensus       121 lavd~~~g~ly~~d~~~~~I~~~~~d--G~~~--~~l--~~~~---l------~~P~~iavdp~~g~ly~td~~~~~~I~  185 (349)
T 3v64_C          121 LAVDWVHDKLYWTDSGTSRIEVANLD--GAHR--KVL--LWQS---L------EKPRAIALHPMEGTIYWTDWGNTPRIE  185 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT--SCSC--EEE--ECTT---C------SCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             EEEecCCCeEEEEcCCCCeEEEEcCC--CCce--EEE--EeCC---C------CCcceEEEecCcCeEEEeccCCCCEEE
Confidence            68889999999999999999999764  4331  111  1111   1      4569999999999999999998 8888


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccc
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQF  163 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~  163 (222)
                      +++.+. ...+.    .+.                         .+...    |+-++++|++++||+|++         
T Consensus       186 r~~~dG-~~~~~----~~~-------------------------~~~~~----PnGla~d~~~~~lY~aD~---------  222 (349)
T 3v64_C          186 ASSMDG-SGRRI----IAD-------------------------THLFW----PNGLTIDYAGRRMYWVDA---------  222 (349)
T ss_dssp             EEETTS-CSCEE----SCC-------------------------SSCSC----EEEEEEETTTTEEEEEET---------
T ss_pred             EEeCCC-CCcEE----EEE-------------------------CCCCC----cceEEEeCCCCEEEEEEC---------
Confidence            887732 11111    110                         01223    999999999999999993         


Q ss_pred             ccccccCCcEEEEEEee
Q 027522          164 YPELKEKGSHMLQIDVN  180 (222)
Q Consensus       164 yp~~~s~~~~i~~~dvd  180 (222)
                            .+..|.++|.|
T Consensus       223 ------~~~~I~~~~~d  233 (349)
T 3v64_C          223 ------KHHVIERANLD  233 (349)
T ss_dssp             ------TTTEEEEEETT
T ss_pred             ------CCCEEEEEeCC
Confidence                  45566666654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.45  E-value=1.1e-06  Score=78.86  Aligned_cols=101  Identities=12%  Similarity=0.146  Sum_probs=71.2

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC-CcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH-GDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh-~sI~   83 (222)
                      +++++.+..+|+.......|.++..+  |+..  .++  ....   -      ..+.+|+++|++++||++.|+. +.|.
T Consensus       164 lavd~~~g~lY~~d~~~~~I~~~~~d--g~~~--~~l--~~~~---l------~~P~giavdp~~g~ly~td~~~~~~I~  228 (386)
T 3v65_B          164 LAVDWVHDKLYWTDSGTSRIEVANLD--GAHR--KVL--LWQS---L------EKPRAIALHPMEGTIYWTDWGNTPRIE  228 (386)
T ss_dssp             EEEETTTTEEEEEETTTTEEEECBTT--SCSC--EEE--ECSS---C------SCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             EEEEeCCCeEEEEcCCCCeEEEEeCC--CCce--EEe--ecCC---C------CCCcEEEEEcCCCeEEEeccCCCCEEE
Confidence            67888899999999988889888654  4331  111  1111   1      4569999999999999999988 8888


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                      +++.+. ...+.   +-..                          +...    |+-++++|++++||+|++
T Consensus       229 r~~~dG-~~~~~---~~~~--------------------------~~~~----PnGlavd~~~~~lY~aD~  265 (386)
T 3v65_B          229 ASSMDG-SGRRI---IADT--------------------------HLFW----PNGLTIDYAGRRMYWVDA  265 (386)
T ss_dssp             EEETTS-CSCEE---EECS--------------------------SCSC----EEEEEEEGGGTEEEEEET
T ss_pred             EEeCCC-CCcEE---EEEC--------------------------CCCC----eeeEEEeCCCCEEEEEEC
Confidence            887632 11111   1110                          1123    999999999999999993

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.42  E-value=3.7e-06  Score=69.27  Aligned_cols=99  Identities=12%  Similarity=0.145  Sum_probs=67.3

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++++|+|+ +||.+.-+..|.+|..  +|+.  ...+... .   ..      ..+..|.+++||+ |||++...+.|.+
T Consensus       126 i~~~~~g~-l~v~~~~~~~i~~~~~--~g~~--~~~~~~~-~---~~------~~p~~i~~~~~g~-l~v~~~~~~~i~~  189 (286)
T 1q7f_A          126 VTVDNKGR-IIVVECKVMRVIIFDQ--NGNV--LHKFGCS-K---HL------EFPNGVVVNDKQE-IFISDNRAHCVKV  189 (286)
T ss_dssp             EEECTTSC-EEEEETTTTEEEEECT--TSCE--EEEEECT-T---TC------SSEEEEEECSSSE-EEEEEGGGTEEEE
T ss_pred             EEEeCCCC-EEEEECCCCEEEEEcC--CCCE--EEEeCCC-C---cc------CCcEEEEECCCCC-EEEEECCCCEEEE
Confidence            67899986 8888887888988864  4433  2222211 1   11      3468999999998 9999999999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |+.+    ++.+..+...                           |.  ...|+.++++++|+ |||++
T Consensus       190 ~~~~----g~~~~~~~~~---------------------------g~--~~~p~~i~~d~~G~-l~v~~  224 (286)
T 1q7f_A          190 FNYE----GQYLRQIGGE---------------------------GI--TNYPIGVGINSNGE-ILIAD  224 (286)
T ss_dssp             EETT----CCEEEEESCT---------------------------TT--SCSEEEEEECTTCC-EEEEE
T ss_pred             EcCC----CCEEEEEccC---------------------------Cc--cCCCcEEEECCCCC-EEEEe
Confidence            9752    3333222211                           10  01399999999995 88888

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.41  E-value=1.6e-05  Score=70.49  Aligned_cols=66  Identities=9%  Similarity=0.108  Sum_probs=47.3

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCe
Q 027522           59 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ  138 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr  138 (222)
                      ....|.+||||++|++++-..+.|.+|++.. ..++.+..+...+                         .+.    .+.
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~-------------------------~~~----~v~  153 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDK-TSKNVLKLRKRFC-------------------------FSK----RPN  153 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECS-SSSSCEEEEEEEE-------------------------CSS----CEE
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcC-CCCceeeeeeccc-------------------------CCC----Cce
Confidence            4789999999999988887789999999952 1233332332100                         012    278


Q ss_pred             eEEECCCCCEEEEEeC
Q 027522          139 MIQLSLDGKRLYVTNS  154 (222)
Q Consensus       139 ~~~lspdGk~LyvaNs  154 (222)
                      .++++|||++|++++.
T Consensus       154 ~~~~sp~~~~l~~~~~  169 (450)
T 2vdu_B          154 AISIAEDDTTVIIADK  169 (450)
T ss_dssp             EEEECTTSSEEEEEET
T ss_pred             EEEEcCCCCEEEEEeC
Confidence            9999999999999963

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.40  E-value=1.1e-05  Score=73.51  Aligned_cols=126  Identities=16%  Similarity=0.110  Sum_probs=79.3

Q ss_pred             CeEEEEecc--CceEEEEEeCCCC-CeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC----------
Q 027522           12 DIGFVGCAL--ASTMVRFSKTQDG-SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL----------   78 (222)
Q Consensus        12 ~~aYvv~EL--sstV~~~~~d~~g-~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg----------   78 (222)
                      .++||+|--  .++|-+|..+.++ .......+  ....+         +.+-|+.+.+||+ +|++|..          
T Consensus       127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~--~g~~~---------~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~  194 (355)
T 3sre_A          127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI--RHKLL---------PSVNDIVAVGPEH-FYATNDHYFIDPYLKSW  194 (355)
T ss_dssp             EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE--CCTTC---------SSEEEEEEEETTE-EEEEESCSCSSHHHHHH
T ss_pred             EEEEEEECCCCCCeEEEEEEECCCCEEEEEecc--ccCCC---------CCCceEEEeCCCC-EEecCCcEeCCcccccc
Confidence            379999887  6778888776443 33332222  11111         5678999999998 4677652          


Q ss_pred             -----CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           79 -----HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        79 -----h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                           ...=++|.+ ++++.+.   +.. +.                          .    .|+-+++||||++||||+
T Consensus       195 e~~~~~~~g~vyr~-d~~~~~~---~~~-~l--------------------------~----~pNGia~spDg~~lYvad  239 (355)
T 3sre_A          195 EMHLGLAWSFVTYY-SPNDVRV---VAE-GF--------------------------D----FANGINISPDGKYVYIAE  239 (355)
T ss_dssp             HHHTTCCCEEEEEE-CTTCCEE---EEE-EE--------------------------S----SEEEEEECTTSSEEEEEE
T ss_pred             hhhccCCccEEEEE-ECCeEEE---eec-CC--------------------------c----ccCcceECCCCCEEEEEe
Confidence                 123456666 3433322   111 11                          1    299999999999999999


Q ss_pred             CCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCC
Q 027522          154 SLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDG  202 (222)
Q Consensus       154 sl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g  202 (222)
                                     +....|.+++++. +|.++....|  ++...|+|
T Consensus       240 ---------------t~~~~I~~~~~~~-~g~l~~~~~~--~~~g~PDG  270 (355)
T 3sre_A          240 ---------------LLAHKIHVYEKHA-NWTLTPLRVL--SFDTLVDN  270 (355)
T ss_dssp             ---------------GGGTEEEEEEECT-TSCEEEEEEE--ECSSEEEE
T ss_pred             ---------------CCCCeEEEEEECC-CCcEecCEEE--eCCCCCce
Confidence                           4567788888874 6777644444  66555555

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.40  E-value=5.2e-06  Score=72.47  Aligned_cols=133  Identities=12%  Similarity=0.088  Sum_probs=90.1

Q ss_pred             EEEcCCCCeEEEEeccC--ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            5 FLHDPSKDIGFVGCALA--STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELs--stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      |.|++  ..+|+.+-+.  |+|.++..+ +|  +..+.+.+++..|           +..  |.++++.||+.+|..+.+
T Consensus        26 L~~~~--~~LyestG~~g~S~v~~vD~~-tg--kv~~~~~l~~~~f-----------geG--i~~~~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           26 LFYLR--GHLYESTGETGRSSVRKVDLE-TG--RILQRAEVPPPYF-----------GAG--IVAWRDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEET--TEEEEEECCTTSCEEEEEETT-TC--CEEEEEECCTTCC-----------EEE--EEEETTEEEEEESSSSEE
T ss_pred             EEEEC--CEEEEECCCCCCceEEEEECC-CC--CEEEEEeCCCCcc-----------eeE--EEEeCCEEEEEEeeCCEE
Confidence            56776  6899999884  789998764 45  4456666665433           233  344589999999999999


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ  162 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q  162 (222)
                      .+||.   .+.+++++++.++.                                +  ..|++||++||++|        .
T Consensus        88 ~v~D~---~tl~~~~ti~~~~~--------------------------------G--wglt~dg~~L~vSd--------g  122 (243)
T 3mbr_X           88 FVYDL---ATLTPRARFRYPGE--------------------------------G--WALTSDDSHLYMSD--------G  122 (243)
T ss_dssp             EEEET---TTTEEEEEEECSSC--------------------------------C--CEEEECSSCEEEEC--------S
T ss_pred             EEEEC---CcCcEEEEEeCCCC--------------------------------c--eEEeeCCCEEEEEC--------C
Confidence            99965   45889988887431                                2  47788999999999        2


Q ss_pred             cccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCC
Q 027522          163 FYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGG  214 (222)
Q Consensus       163 ~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~g  214 (222)
                              +..+..+  |++|.++  ...+.|.-++.|-.  ..-||-|-+|
T Consensus       123 --------s~~l~~i--Dp~t~~~--~~~I~V~~~g~~~~--~lNeLe~~~G  160 (243)
T 3mbr_X          123 --------TAVIRKL--DPDTLQQ--VGSIKVTAGGRPLD--NLNELEWVNG  160 (243)
T ss_dssp             --------SSEEEEE--CTTTCCE--EEEEECEETTEECC--CEEEEEEETT
T ss_pred             --------CCeEEEE--eCCCCeE--EEEEEEccCCcccc--cceeeEEeCC
Confidence                    5567767  7787654  34445543433333  3345655555

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.40  E-value=4.5e-06  Score=73.78  Aligned_cols=117  Identities=18%  Similarity=0.244  Sum_probs=79.5

Q ss_pred             EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecC--cccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKS--LKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p--~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .+.++++++|+.++ +++|.++.-   .+++....|.+..  .++         ...-++... || .|||++|..++|+
T Consensus       131 glt~dg~~L~~SdG-s~~i~~iDp---~T~~v~~~I~V~~~g~~~---------~~lNELe~~-~G-~lyan~w~~~~I~  195 (262)
T 3nol_A          131 GLTHNDQYLIMSDG-TPVLRFLDP---ESLTPVRTITVTAHGEEL---------PELNELEWV-DG-EIFANVWQTNKIV  195 (262)
T ss_dssp             CEEECSSCEEECCS-SSEEEEECT---TTCSEEEEEECEETTEEC---------CCEEEEEEE-TT-EEEEEETTSSEEE
T ss_pred             EEecCCCEEEEECC-CCeEEEEcC---CCCeEEEEEEeccCCccc---------cccceeEEE-CC-EEEEEEccCCeEE
Confidence            45578999999998 888888753   2466677776642  111         112234433 66 6999999999888


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ  162 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q  162 (222)
                      +.   |+.+++.++.|.+.|..+..         + ...|     .+.    .|+-++++|++++||||.   +.|++=
T Consensus       196 vI---Dp~tG~V~~~Id~~~L~~~~---------~-~~~~-----~~~----vlNGIA~dp~~~~lfVTG---K~Wp~~  249 (262)
T 3nol_A          196 RI---DPETGKVTGIIDLNGILAEA---------G-PLPS-----PID----VLNGIAWDKEHHRLFVTG---KLWPKV  249 (262)
T ss_dssp             EE---CTTTCBEEEEEECTTGGGGS---------C-SCCS-----SCC----CEEEEEEETTTTEEEEEE---TTCSEE
T ss_pred             EE---ECCCCcEEEEEECCcCcccc---------c-cccC-----cCC----ceEEEEEcCCCCEEEEEC---CCCCce
Confidence            77   67789999999987653210         0 0000     122    389999999999999999   455443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.37  E-value=4.2e-06  Score=74.45  Aligned_cols=139  Identities=12%  Similarity=0.100  Sum_probs=78.6

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEE-ecCcccccccCCCCCCceeEEEEcCC---CCEEEEEeCC-
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAIS-VKSLKVQNWILPEMPGLITDFLISLD---DRFLYFSNWL-   78 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is-~~p~~~~g~~~~~~~~~~adI~iSpD---grfLYvSnRg-   78 (222)
                      -++|.|+|+++|| +|....|.++..  +|...  +.+. ++.....+.      ....+|.++||   +++||++... 
T Consensus        22 ~i~~~pdG~~l~V-~e~~G~i~~~~~--~g~~~--~~~~~~~~v~~~g~------~g~~gia~~pdf~~~g~lYv~~~~~   90 (353)
T 2g8s_A           22 ALAFLPDNHGMLI-TLRGGELRHWQA--GKGLS--APLSGVPDVWAHGQ------GGLLDVVLAPDFAQSRRIWLSYSEV   90 (353)
T ss_dssp             EEEECSTTCCEEE-EETTTEEEEEET--TTEEC--CCCBSCCCCCCSTT------CSEEEEEECTTHHHHCEEEEEEEEE
T ss_pred             EEEEcCCCCEEEE-EeCCceEEEEeC--CCcee--eEecCCcccccCCC------CCceeEEECCCCCCCCEEEEEEeCC
Confidence            4789999998774 567899999863  44332  1111 211111222      34589999998   9999999754 


Q ss_pred             ------CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE
Q 027522           79 ------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT  152 (222)
Q Consensus        79 ------h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva  152 (222)
                            .+.|..|+.+. ...++.....+            +.     ..|..  ..+.|   .|+.|+++||| +|||+
T Consensus        91 ~~~g~~~~~v~r~~~~~-~~~~~~~~~~i------------~~-----~~p~~--~~~~h---~~~~l~~~pdG-~Lyv~  146 (353)
T 2g8s_A           91 GDDGKAGTAVGYGRLSD-DLSKVTDFRTV------------FR-----QMPKL--STGNH---FGGRLVFDGKG-YLFIA  146 (353)
T ss_dssp             CSSSCEEEEEEEEEECT-TSSBEEEEEEE------------EE-----CSSCC--BSSSC---CCCCEEECSSS-EEEEE
T ss_pred             CCCCCceeEEEEEEECC-CCCCCCceEEE------------EE-----ECCCC--CCCcc---cCccEEECCCC-cEEEE
Confidence                  45688888853 33444221100            00     01110  01122   37889999999 89999


Q ss_pred             eCCCCc-cccccccccccCCcEEEEEEee
Q 027522          153 NSLFSA-WDCQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       153 Nsl~~~-wd~Q~yp~~~s~~~~i~~~dvd  180 (222)
                      +.--.+ =..|+   ..+....|+|+|.|
T Consensus       147 ~Gd~~~~~~~q~---~~~~~g~I~ri~~d  172 (353)
T 2g8s_A          147 LGENNQRPTAQD---LDKLQGKLVRLTDQ  172 (353)
T ss_dssp             ECCTTCGGGGGC---TTSCTTEEEEEETT
T ss_pred             ECCCCCCCccCC---CCCCCeEEEEECCC
Confidence            631111 00111   11234678888765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.36  E-value=8.8e-06  Score=73.53  Aligned_cols=100  Identities=15%  Similarity=0.163  Sum_probs=69.7

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC-CcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH-GDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh-~sI~   83 (222)
                      +++++.++.+|+.......|.++..+  |+.. ...+.   .   +-      ..+.+|+++|.+++||++.|+. +.|.
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~--g~~~-~~l~~---~---~~------~~P~~iavdp~~g~ly~td~~~~~~I~  228 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTK--GVKR-KTLFR---E---NG------SKPRAIVVDPVHGFMYWTDWGTPAKIK  228 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTT--TCSE-EEEEE---C---SS------CCEEEEEEETTTTEEEEEECSSSCCEE
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCC--CCce-EEEEe---C---CC------CCcceEEEecccCeEEEEeCCCCCEEE
Confidence            67888888999999888889888653  4432 11111   1   11      4569999999999999999984 7888


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +++.+. ...+.   +-..+                          -.+    |+-+++++++++||+|+
T Consensus       229 ~~~~dG-~~~~~---~~~~~--------------------------l~~----P~glavd~~~~~lY~aD  264 (400)
T 3p5b_L          229 KGGLNG-VDIYS---LVTEN--------------------------IQW----PNGITLDLLSGRLYWVD  264 (400)
T ss_dssp             EEETTS-CSCEE---EECSS--------------------------CSC----EEEEEEETTTTEEEEEE
T ss_pred             EEeCCC-CccEE---EEECC--------------------------CCc----eEEEEEEeCCCEEEEEE
Confidence            887732 11111   11100                          123    99999999999999998

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.36  E-value=9.7e-06  Score=67.46  Aligned_cols=118  Identities=14%  Similarity=0.127  Sum_probs=70.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC--C----
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW--L----   78 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR--g----   78 (222)
                      ++++|+|+ .|+...-...|.+|... +|++...  ...... . ..      +.+.+|.++|||+ ||+|+.  +    
T Consensus        74 l~~~~dg~-l~v~~~~~~~i~~~d~~-~g~~~~~--~~~~~~-~-~~------~~~~~i~~d~~G~-l~vtd~~~g~~~~  140 (296)
T 3e5z_A           74 HCLNKQGH-LIACSHGLRRLERQREP-GGEWESI--ADSFEG-K-KL------NSPNDVCLAPDGS-LWFSDPTYGIDKP  140 (296)
T ss_dssp             EEECTTCC-EEEEETTTTEEEEECST-TCCEEEE--ECEETT-E-EC------CCCCCEEECTTSC-EEEEECSHHHHCG
T ss_pred             eeECCCCc-EEEEecCCCeEEEEcCC-CCcEEEE--eeccCC-C-CC------CCCCCEEECCCCC-EEEECCccccccc
Confidence            68899998 57777666788888652 5655322  111111 0 01      3457999999998 666532  1    


Q ss_pred             ---------CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEE
Q 027522           79 ---------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRL  149 (222)
Q Consensus        79 ---------h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~L  149 (222)
                               .+.-.+|.++ +. +++. .+.. +                          ..    .|+.+++||||+.|
T Consensus       141 ~~~~~~~~~~~~~~l~~~~-~~-g~~~-~~~~-~--------------------------~~----~~~gi~~s~dg~~l  186 (296)
T 3e5z_A          141 EEGYGGEMELPGRWVFRLA-PD-GTLS-APIR-D--------------------------RV----KPNGLAFLPSGNLL  186 (296)
T ss_dssp             GGSSCCCCCSSSCEEEEEC-TT-SCEE-EEEC-C--------------------------CS----SEEEEEECTTSCEE
T ss_pred             cccccccccCCCcEEEEEC-CC-CCEE-Eeec-C--------------------------CC----CCccEEECCCCCEE
Confidence                     1123556663 33 3331 1111 0                          12    28999999999999


Q ss_pred             EEEeCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522          150 YVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       150 yvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l  186 (222)
                       +++               +.+..|.++|++ .+|.+
T Consensus       187 -v~~---------------~~~~~i~~~~~~-~~g~~  206 (296)
T 3e5z_A          187 -VSD---------------TGDNATHRYCLN-ARGET  206 (296)
T ss_dssp             -EEE---------------TTTTEEEEEEEC-SSSCE
T ss_pred             -EEe---------------CCCCeEEEEEEC-CCCcC
Confidence             888               345677777775 35665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.36  E-value=8.8e-06  Score=65.89  Aligned_cols=109  Identities=8%  Similarity=0.087  Sum_probs=73.3

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++++|+|+ +|+.+.-++.|.++..+  +...    .....   .+.      ..+..|.+++|| .||+++++.+.|.+
T Consensus       155 i~~~~~g~-l~v~~~~~~~i~~~~~~--~~~~----~~~~~---~~~------~~p~~i~~d~~g-~l~v~~~~~~~v~~  217 (270)
T 1rwi_B          155 VAVDNSGN-VYVTDTDNNRVVKLEAE--SNNQ----VVLPF---TDI------TAPWGIAVDEAG-TVYVTEHNTNQVVK  217 (270)
T ss_dssp             EEECTTCC-EEEEEGGGTEEEEECTT--TCCE----EECCC---SSC------CSEEEEEECTTC-CEEEEETTTSCEEE
T ss_pred             EEEeCCCC-EEEEECCCCEEEEEecC--CCce----Eeecc---cCC------CCceEEEECCCC-CEEEEECCCCcEEE
Confidence            68899997 99998888899888653  2211    11111   111      346899999999 89999999999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY  164 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y  164 (222)
                      |+.+.   ... ..+...                          +..    .|..+++++||+ |||++           
T Consensus       218 ~~~~~---~~~-~~~~~~--------------------------~~~----~p~~i~~~~~g~-l~v~~-----------  251 (270)
T 1rwi_B          218 LLAGS---TTS-TVLPFT--------------------------GLN----TPLAVAVDSDRT-VYVAD-----------  251 (270)
T ss_dssp             ECTTC---SCC-EECCCC--------------------------SCS----CEEEEEECTTCC-EEEEE-----------
T ss_pred             EcCCC---Ccc-eeeccC--------------------------CCC----CceeEEECCCCC-EEEEE-----------
Confidence            96632   111 011110                          012    399999999996 99999           


Q ss_pred             cccccCCcEEEEEEee
Q 027522          165 PELKEKGSHMLQIDVN  180 (222)
Q Consensus       165 p~~~s~~~~i~~~dvd  180 (222)
                          ..+..|..++.+
T Consensus       252 ----~~~~~v~~~~~~  263 (270)
T 1rwi_B          252 ----RGNDRVVKLTSL  263 (270)
T ss_dssp             ----GGGTEEEEECCC
T ss_pred             ----CCCCEEEEEcCC
Confidence                346677777553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.35  E-value=1.4e-05  Score=67.54  Aligned_cols=102  Identities=17%  Similarity=0.187  Sum_probs=61.2

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC--C----
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW--L----   78 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR--g----   78 (222)
                      ++++|+|+ +|+.......|.++..  +|+++..  ....    .+..    -+.+.+|.+++||+ ||++.-  |    
T Consensus        91 l~~d~dG~-l~v~~~~~~~v~~~~~--~g~~~~~--~~~~----~~~~----~~~~~~i~~d~dG~-l~~td~~~g~~~~  156 (305)
T 3dr2_A           91 NAVDAQQR-LVHCEHGRRAITRSDA--DGQAHLL--VGRY----AGKR----LNSPNDLIVARDGA-IWFTDPPFGLRKP  156 (305)
T ss_dssp             EEECTTSC-EEEEETTTTEEEEECT--TSCEEEE--ECEE----TTEE----CSCCCCEEECTTSC-EEEECCSGGGSCG
T ss_pred             eeECCCCC-EEEEECCCCEEEEECC--CCCEEEE--Eecc----CCCc----cCCCCCEEECCCCC-EEEeCcCCCcccc
Confidence            57888887 6776666678888865  3654322  1111    1110    04467999999998 667531  1    


Q ss_pred             ---------CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEE
Q 027522           79 ---------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRL  149 (222)
Q Consensus        79 ---------h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~L  149 (222)
                               .+.-.+|.+ ++.++++.. +.  +.                          ..    |+.+++||||++|
T Consensus       157 ~~~~~~~~~~~~~~v~~~-d~~~g~~~~-~~--~~--------------------------~~----p~gl~~spdg~~l  202 (305)
T 3dr2_A          157 SQGCPADPELAHHSVYRL-PPDGSPLQR-MA--DL--------------------------DH----PNGLAFSPDEQTL  202 (305)
T ss_dssp             GGSCCCCCSSSCEEEEEE-CSSSCCCEE-EE--EE--------------------------SS----EEEEEECTTSSEE
T ss_pred             ccccccccccCCCeEEEE-cCCCCcEEE-Ee--cC--------------------------CC----CcceEEcCCCCEE
Confidence                     123456666 333343321 11  11                          12    8899999999999


Q ss_pred             EEEeC
Q 027522          150 YVTNS  154 (222)
Q Consensus       150 yvaNs  154 (222)
                      ||+++
T Consensus       203 yv~~~  207 (305)
T 3dr2_A          203 YVSQT  207 (305)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99983

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.34  E-value=4.4e-06  Score=74.22  Aligned_cols=132  Identities=14%  Similarity=0.126  Sum_probs=88.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      |.|+  ++.+|+.+-+..+|.++.. ++|+.  ++.+ +++..|           +..  |+++|+.||+++|..+.+.+
T Consensus        60 L~~~--~~~Ly~stG~~g~v~~iD~-~Tgkv--~~~~-l~~~~F-----------geG--it~~g~~Ly~ltw~~~~v~V  120 (268)
T 3nok_A           60 LVFH--QGHFFESTGHQGTLRQLSL-ESAQP--VWME-RLGNIF-----------AEG--LASDGERLYQLTWTEGLLFT  120 (268)
T ss_dssp             EEEE--TTEEEEEETTTTEEEECCS-SCSSC--SEEE-ECTTCC-----------EEE--EEECSSCEEEEESSSCEEEE
T ss_pred             EEEE--CCEEEEEcCCCCEEEEEEC-CCCcE--EeEE-CCCCcc-----------eeE--EEEeCCEEEEEEccCCEEEE
Confidence            3455  5799999999989777755 34544  3444 554333           223  45578999999999999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY  164 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y  164 (222)
                      ||.   .+.++++++..++                                  .-..|++||++||++|           
T Consensus       121 ~D~---~Tl~~~~ti~~~~----------------------------------eGwGLt~Dg~~L~vSd-----------  152 (268)
T 3nok_A          121 WSG---MPPQRERTTRYSG----------------------------------EGWGLCYWNGKLVRSD-----------  152 (268)
T ss_dssp             EET---TTTEEEEEEECSS----------------------------------CCCCEEEETTEEEEEC-----------
T ss_pred             EEC---CcCcEEEEEeCCC----------------------------------ceeEEecCCCEEEEEC-----------
Confidence            965   4588988888732                                  1247778999999999           


Q ss_pred             cccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCC
Q 027522          165 PELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGG  214 (222)
Q Consensus       165 p~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~g  214 (222)
                           .+..+..+  |++|++.  ...+.|.-+..+-.  ..-||-|-+|
T Consensus       153 -----Gs~~l~~i--Dp~T~~v--~~~I~V~~~g~~v~--~lNeLe~~dG  191 (268)
T 3nok_A          153 -----GGTMLTFH--EPDGFAL--VGAVQVKLRGQPVE--LINELECANG  191 (268)
T ss_dssp             -----SSSEEEEE--CTTTCCE--EEEEECEETTEECC--CEEEEEEETT
T ss_pred             -----CCCEEEEE--cCCCCeE--EEEEEeCCCCcccc--cccccEEeCC
Confidence                 25567767  6787754  44455544433322  3345555554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.33  E-value=7e-06  Score=71.66  Aligned_cols=111  Identities=17%  Similarity=0.195  Sum_probs=77.8

Q ss_pred             CCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 027522            9 PSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIE   88 (222)
Q Consensus         9 P~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~   88 (222)
                      +.++.+|+++--+++++++..+   +++.+.+++.+.   +||            .|++|++.||+|| +.+.|.++   
T Consensus        72 ~~~~~ly~ltw~~~~v~v~D~~---tl~~~~ti~~~~---~Gw------------glt~dg~~L~vSd-gs~~l~~i---  129 (243)
T 3mbr_X           72 AWRDRLIQLTWRNHEGFVYDLA---TLTPRARFRYPG---EGW------------ALTSDDSHLYMSD-GTAVIRKL---  129 (243)
T ss_dssp             EETTEEEEEESSSSEEEEEETT---TTEEEEEEECSS---CCC------------EEEECSSCEEEEC-SSSEEEEE---
T ss_pred             EeCCEEEEEEeeCCEEEEEECC---cCcEEEEEeCCC---Cce------------EEeeCCCEEEEEC-CCCeEEEE---
Confidence            3478999999999999999753   567777777643   344            3558999999999 58888887   


Q ss_pred             CCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccccccc
Q 027522           89 DPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELK  168 (222)
Q Consensus        89 d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~  168 (222)
                      |+.+.+.+++|.++.                         .|+. ...++.+..  .+.+|||++               
T Consensus       130 Dp~t~~~~~~I~V~~-------------------------~g~~-~~~lNeLe~--~~G~lyanv---------------  166 (243)
T 3mbr_X          130 DPDTLQQVGSIKVTA-------------------------GGRP-LDNLNELEW--VNGELLANV---------------  166 (243)
T ss_dssp             CTTTCCEEEEEECEE-------------------------TTEE-CCCEEEEEE--ETTEEEEEE---------------
T ss_pred             eCCCCeEEEEEEEcc-------------------------CCcc-cccceeeEE--eCCEEEEEE---------------
Confidence            567788888888742                         1221 111344443  355699777               


Q ss_pred             cCCcEEEEEEeeCCCCCe
Q 027522          169 EKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       169 s~~~~i~~~dvd~~~G~l  186 (222)
                      -++..|.+|  |+.||+.
T Consensus       167 w~s~~I~vI--Dp~tG~V  182 (243)
T 3mbr_X          167 WLTSRIARI--DPASGKV  182 (243)
T ss_dssp             TTTTEEEEE--CTTTCBE
T ss_pred             CCCCeEEEE--ECCCCCE
Confidence            235578877  7899986

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.32  E-value=1.3e-05  Score=69.58  Aligned_cols=104  Identities=9%  Similarity=0.061  Sum_probs=70.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|++.+..+|+......+|.++..+....-...++  +.+..+         ..+..|++++.++.||+++.+.+.|.+
T Consensus        35 ~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~--~~~~~~---------~~p~glavd~~~~~ly~~d~~~~~I~~  103 (316)
T 1ijq_A           35 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDI---------QAPDGLAVDWIHSNIYWTDSVLGTVSV  103 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEC--------CEE--EECSSC---------SCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE--EEeCCC---------CCcCEEEEeecCCeEEEEECCCCEEEE
Confidence            689999999999999999999998642100011111  111111         235789999999999999999999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ++.+. ...+.  .+..                           ....    |+.++++|++++||+++
T Consensus       104 ~~~~g-~~~~~--~~~~---------------------------~~~~----P~~iavdp~~g~ly~~d  138 (316)
T 1ijq_A          104 ADTKG-VKRKT--LFRE---------------------------NGSK----PRAIVVDPVHGFMYWTD  138 (316)
T ss_dssp             EETTS-SSEEE--EEEC---------------------------TTCC----EEEEEEETTTTEEEEEE
T ss_pred             EeCCC-CceEE--EEEC---------------------------CCCC----cceEEeCCCCCEEEEEc
Confidence            87732 11111  0111                           1233    99999999999999998

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.31  E-value=5.5e-06  Score=72.92  Aligned_cols=101  Identities=12%  Similarity=0.160  Sum_probs=69.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC-CCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL-HGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg-h~sI~   83 (222)
                      +++++.+..+|+.......|.++..+  |+..  +++  ...   +-      ..+.+|.++|++++||++.|+ ...|.
T Consensus        84 lavd~~~g~ly~~d~~~~~I~~~~~d--G~~~--~~l--~~~---~~------~~P~giavdp~~g~ly~td~~~~~~I~  148 (318)
T 3sov_A           84 LACDWLGEKLYWTDSETNRIEVSNLD--GSLR--KVL--FWQ---EL------DQPRAIALDPSSGFMYWTDWGEVPKIE  148 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT--SCSC--EEE--ECS---SC------SSEEEEEEEGGGTEEEEEECSSSCEEE
T ss_pred             EEEEcCCCeEEEEECCCCEEEEEECC--CCcE--EEE--EeC---CC------CCccEEEEeCCCCEEEEEecCCCCEEE
Confidence            67888888999998888889888764  4322  111  111   11      456999999999999999997 57787


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                      +++.+.  +.+.  .+-..                          +-..    |+-+++++++++||+|++
T Consensus       149 r~~~dG--~~~~--~~~~~--------------------------~l~~----Pnglavd~~~~~lY~aD~  185 (318)
T 3sov_A          149 RAGMDG--SSRF--IIINS--------------------------EIYW----PNGLTLDYEEQKLYWADA  185 (318)
T ss_dssp             EEETTS--CSCE--EEECS--------------------------SCSC----EEEEEEETTTTEEEEEET
T ss_pred             EEEcCC--CCeE--EEEEC--------------------------CCCC----ccEEEEeccCCEEEEEEC
Confidence            776632  2211  11110                          1123    999999999999999994

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.30  E-value=1.8e-05  Score=70.54  Aligned_cols=132  Identities=14%  Similarity=0.145  Sum_probs=76.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC---CCEEEEEeCC---
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD---DRFLYFSNWL---   78 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD---grfLYvSnRg---   78 (222)
                      ++|+|+|+ +|| +|....|.++.  .+|+ +  .+..++ -...+.      ..+.+|.++||   +++|||++..   
T Consensus        34 ia~~pdG~-l~V-~e~~g~I~~~d--~~G~-~--~~~~~~-v~~~g~------~g~~gia~~pdf~~~g~lyv~~~~~~~   99 (354)
T 3a9g_A           34 IAPLGGGR-YLV-TERPGRLVLIS--PSGK-K--LVASFD-VANVGE------AGLLGLALHPEFPKKSWVYLYASYFAE   99 (354)
T ss_dssp             EEEEETTE-EEE-EETTTEEEEEC--SSCE-E--EEEECC-CCCSTT------CSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred             EEEcCCCe-EEE-EeCCCEEEEEe--CCCc-e--Eeeccc-eeecCC------CceeeEEeCCCCCcCCEEEEEEeccCC
Confidence            68999997 555 47779999984  4565 2  222332 111222      45689999999   9999999863   


Q ss_pred             C----CcEEEEEecCCCCCeEEE-EEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           79 H----GDIRQYNIEDPKNPVLTG-QIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        79 h----~sI~vf~i~d~~~~~L~~-~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .    +.|..|+.+. ...++.. ++-..+ ++.                     .+.|   .|+.|+++|||+ ||++.
T Consensus       100 ~~~~~~~v~r~~~~~-~~~~~~~~~~l~~~-~~~---------------------~~~h---~~~~l~~~pDG~-Lyvt~  152 (354)
T 3a9g_A          100 GGHIRNRVIRGRLDG-STFKLKEVKTLIDG-IPG---------------------AYIH---NGGRIRFGPDGM-LYITT  152 (354)
T ss_dssp             GGCEEEEEEEEEECS-SSCCEEEEEEEEEE-EEC---------------------CSSC---CCCCEEECTTSC-EEEEC
T ss_pred             CCCcceEEEEEEECC-CCcCcCccEEEEEc-CCC---------------------CCCc---CCceEEECCCCc-EEEEE
Confidence            3    5788888743 2223321 111100 000                     1112   388999999995 99996


Q ss_pred             CCCC-ccccccccccccCCcEEEEEEee
Q 027522          154 SLFS-AWDCQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       154 sl~~-~wd~Q~yp~~~s~~~~i~~~dvd  180 (222)
                      .-.. ....|+   ..+....|+|++.|
T Consensus       153 G~~~~~~~~~d---~~~~~G~I~ri~~d  177 (354)
T 3a9g_A          153 GDAADPRLAQD---LSSLAGKILRVDEE  177 (354)
T ss_dssp             CCTTCGGGGTC---TTCCSSEEEEECTT
T ss_pred             CCCCCCccccC---CCCCCeEEEEEcCC
Confidence            3111 111121   11235678888665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.28  E-value=1.1e-05  Score=65.33  Aligned_cols=96  Identities=10%  Similarity=0.144  Sum_probs=63.2

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++++|+|+ +||.+. ++.|.++..  ++...  .  .+..   .+.      ..+.+|.+++||+ ||+++.+.+.|.+
T Consensus        72 i~~~~~g~-l~v~~~-~~~i~~~d~--~~~~~--~--~~~~---~~~------~~p~~i~~~~~g~-l~v~~~~~~~i~~  133 (270)
T 1rwi_B           72 LAVDGAGT-VYVTDF-NNRVVTLAA--GSNNQ--T--VLPF---DGL------NYPEGLAVDTQGA-VYVADRGNNRVVK  133 (270)
T ss_dssp             EEECTTCC-EEEEET-TTEEEEECT--TCSCC--E--ECCC---CSC------SSEEEEEECTTCC-EEEEEGGGTEEEE
T ss_pred             eEECCCCC-EEEEcC-CCEEEEEeC--CCceE--e--eeec---CCc------CCCcceEECCCCC-EEEEECCCCEEEE
Confidence            67899988 888887 788888754  33321  1  1111   111      3468999999998 9999998888888


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |+   .++....  ....                         .....    |+.++++++|+ |||++
T Consensus       134 ~~---~~~~~~~--~~~~-------------------------~~~~~----p~~i~~~~~g~-l~v~~  167 (270)
T 1rwi_B          134 LA---AGSKTQT--VLPF-------------------------TGLND----PDGVAVDNSGN-VYVTD  167 (270)
T ss_dssp             EC---TTCCSCE--ECCC-------------------------CSCCS----CCCEEECTTCC-EEEEE
T ss_pred             EE---CCCceeE--eecc-------------------------ccCCC----ceeEEEeCCCC-EEEEE
Confidence            83   2222221  0000                         00123    99999999997 99998

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.27  E-value=2.7e-05  Score=61.94  Aligned_cols=101  Identities=13%  Similarity=0.074  Sum_probs=65.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ++|+|+++++++.+.-+.++.++..+. .+..   +  .+...          +.....+.+||||++|+++....+.+.
T Consensus       134 ~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~---~--~~~~~----------~~~~~~~~~s~dg~~l~~~~~~~~~~~  198 (297)
T 2ojh_A          134 HGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE---T--RLTHG----------EGRNDGPDYSPDGRWIYFNSSRTGQMQ  198 (297)
T ss_dssp             EEECTTSSEEEEEEEETTEEEEEEEETTTCCE---E--ECCCS----------SSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             eEECCCCCEEEEEECCCCceEEEEEECCCCcc---e--EcccC----------CCccccceECCCCCEEEEEecCCCCcc
Confidence            579999998887776677776666542 2322   1  11111          134588999999999998886677888


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|.++.. ...+ ..+...                           ...    ...+++||||++|+++.
T Consensus       199 i~~~~~~-~~~~-~~~~~~---------------------------~~~----~~~~~~s~dg~~l~~~~  235 (297)
T 2ojh_A          199 IWRVRVD-GSSV-ERITDS---------------------------AYG----DWFPHPSPSGDKVVFVS  235 (297)
T ss_dssp             EEEEETT-SSCE-EECCCC---------------------------SEE----EEEEEECTTSSEEEEEE
T ss_pred             EEEECCC-CCCc-EEEecC---------------------------Ccc----cCCeEECCCCCEEEEEE
Confidence            8988522 2222 111110                           111    56789999999998886

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.27  E-value=7.9e-05  Score=62.19  Aligned_cols=103  Identities=7%  Similarity=0.084  Sum_probs=71.3

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++++.++ +.+|.+|..+ ++++...+.+...    .        .....|.+|||+++|+++.. .+.|.
T Consensus        13 ~~~~s~~~~~l~~~~~-d~~v~i~~~~-~~~~~~~~~~~~h----~--------~~v~~~~~~~~~~~l~~~~~-dg~i~   77 (372)
T 1k8k_C           13 CHAWNKDRTQIAICPN-NHEVHIYEKS-GNKWVQVHELKEH----N--------GQVTGVDWAPDSNRIVTCGT-DRNAY   77 (372)
T ss_dssp             EEEECTTSSEEEEECS-SSEEEEEEEE-TTEEEEEEEEECC----S--------SCEEEEEEETTTTEEEEEET-TSCEE
T ss_pred             EEEECCCCCEEEEEeC-CCEEEEEeCC-CCcEEeeeeecCC----C--------CcccEEEEeCCCCEEEEEcC-CCeEE
Confidence            4689999999888766 7889999774 3444444443311    1        34689999999999988774 67899


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   .++.......+                         ...    ....++++|+|++|+++.
T Consensus        78 vwd~~~---~~~~~~~~~~~-------------------------~~~----~v~~~~~~~~~~~l~~~~  115 (372)
T 1k8k_C           78 VWTLKG---RTWKPTLVILR-------------------------INR----AARCVRWAPNEKKFAVGS  115 (372)
T ss_dssp             EEEEET---TEEEEEEECCC-------------------------CSS----CEEEEEECTTSSEEEEEE
T ss_pred             EEECCC---CeeeeeEEeec-------------------------CCC----ceeEEEECCCCCEEEEEe
Confidence            999954   33322222211                         011    278899999999999886

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.26  E-value=1.6e-05  Score=68.84  Aligned_cols=80  Identities=8%  Similarity=0.140  Sum_probs=50.1

Q ss_pred             EEEcCCCCeEEEEec---cCceEEEEEeCCCCCeeEEEEEE----ecCcc----cccccCC---------CCCCceeEEE
Q 027522            5 FLHDPSKDIGFVGCA---LASTMVRFSKTQDGSWNHEVAIS----VKSLK----VQNWILP---------EMPGLITDFL   64 (222)
Q Consensus         5 ~afhP~g~~aYvv~E---LsstV~~~~~d~~g~~~~~q~is----~~p~~----~~g~~~~---------~~~~~~adI~   64 (222)
                      ++++|++.++|+..+   .+.+|.++..+ +|+.  ..++.    +.+..    +.|..+.         .....+-.|.
T Consensus       125 v~vd~~~g~~yvtd~~~~~~~~i~v~d~~-~g~~--~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia  201 (343)
T 2qe8_A          125 LAVDLIHNFVYISDPAPDDKAALIRVDLQ-TGLA--ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV  201 (343)
T ss_dssp             EEEETTTTEEEEEECCSGGGCEEEEEETT-TCCE--EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE
T ss_pred             EEEecCCCEEEEEcCccCCCCeEEEEECC-CCCE--EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE
Confidence            578888889999999   88999999874 3432  22221    00100    0110000         0112356799


Q ss_pred             EcCCCCEEEEEeCCCCcEEEEEe
Q 027522           65 ISLDDRFLYFSNWLHGDIRQYNI   87 (222)
Q Consensus        65 iSpDgrfLYvSnRgh~sI~vf~i   87 (222)
                      +||||++||+++.....|..++.
T Consensus       202 ~s~dg~~ly~~~~~~~~l~~~~~  224 (343)
T 2qe8_A          202 LDAENEWLYLSPMHSTSMYRIKS  224 (343)
T ss_dssp             ECTTSCEEEEEESSCSEEEEEEH
T ss_pred             eccCCCEEEEEeCCCCeEEEEEH
Confidence            99999999999987766665554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.25  E-value=5.3e-05  Score=65.26  Aligned_cols=115  Identities=11%  Similarity=0.167  Sum_probs=66.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC----C
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH----G   80 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh----~   80 (222)
                      ++++|+|++ |+.++  ..|+++.. .+|+++.  ... .+....       .+.+.+|.++|||++ |+++.+.    .
T Consensus        95 i~~~~dg~l-~v~~~--~gl~~~d~-~~g~~~~--~~~-~~~~~~-------~~~~~~i~~d~~G~l-~v~~~~~~~~~~  159 (326)
T 2ghs_A           95 LAKISDSKQ-LIASD--DGLFLRDT-ATGVLTL--HAE-LESDLP-------GNRSNDGRMHPSGAL-WIGTMGRKAETG  159 (326)
T ss_dssp             EEEEETTEE-EEEET--TEEEEEET-TTCCEEE--EEC-SSTTCT-------TEEEEEEEECTTSCE-EEEEEETTCCTT
T ss_pred             EEEeCCCeE-EEEEC--CCEEEEEC-CCCcEEE--Eee-CCCCCC-------CCCCCCEEECCCCCE-EEEeCCCcCCCC
Confidence            567788764 44443  44776654 2455432  111 111100       135689999999995 6665432    2


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccc
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWD  160 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd  160 (222)
                      ...+|.++ .  +++.. +.. +                          ...    |+.+++||||++||+++       
T Consensus       160 ~~~l~~~~-~--g~~~~-~~~-~--------------------------~~~----~~~i~~s~dg~~lyv~~-------  197 (326)
T 2ghs_A          160 AGSIYHVA-K--GKVTK-LFA-D--------------------------ISI----PNSICFSPDGTTGYFVD-------  197 (326)
T ss_dssp             CEEEEEEE-T--TEEEE-EEE-E--------------------------ESS----EEEEEECTTSCEEEEEE-------
T ss_pred             ceEEEEEe-C--CcEEE-eeC-C--------------------------Ccc----cCCeEEcCCCCEEEEEE-------
Confidence            34556664 2  44321 111 0                          112    88999999999999998       


Q ss_pred             cccccccccCCcEEEEEEeeCCCC
Q 027522          161 CQFYPELKEKGSHMLQIDVNSEKG  184 (222)
Q Consensus       161 ~Q~yp~~~s~~~~i~~~dvd~~~G  184 (222)
                              +.+..|.++|++..+|
T Consensus       198 --------~~~~~I~~~d~~~~~G  213 (326)
T 2ghs_A          198 --------TKVNRLMRVPLDARTG  213 (326)
T ss_dssp             --------TTTCEEEEEEBCTTTC
T ss_pred             --------CCCCEEEEEEcccccC
Confidence                    2356777777765566

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.24  E-value=3e-05  Score=72.13  Aligned_cols=104  Identities=14%  Similarity=0.214  Sum_probs=62.0

Q ss_pred             eEEEcCCCCeEEEEec--cCc--eEEEEEeCCCC-CeeEEEEEEecCcccccccCCCCCCceeEEEEcC--CCCEEEEEe
Q 027522            4 RFLHDPSKDIGFVGCA--LAS--TMVRFSKTQDG-SWNHEVAISVKSLKVQNWILPEMPGLITDFLISL--DDRFLYFSN   76 (222)
Q Consensus         4 r~afhP~g~~aYvv~E--Lss--tV~~~~~d~~g-~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp--DgrfLYvSn   76 (222)
                      .++|+|+|+++++...  ...  +|.++.. .+| ...  ....-.   ...+.     .....+.+||  ||++||+++
T Consensus       262 ~~~~spdg~~l~~~~~~~~~~~~~v~~~d~-~~g~~~~--~~~~~~---~~~~~-----~~~~~~~~sp~~dg~~l~~~~  330 (706)
T 2z3z_A          262 NLSWSPDENILYVAEVNRAQNECKVNAYDA-ETGRFVR--TLFVET---DKHYV-----EPLHPLTFLPGSNNQFIWQSR  330 (706)
T ss_dssp             EEEECTTSSEEEEEEECTTSCEEEEEEEET-TTCCEEE--EEEEEE---CSSCC-----CCCSCCEECTTCSSEEEEEEC
T ss_pred             eEEEECCCCEEEEEEeCCCCCeeEEEEEEC-CCCceee--EEEEcc---CCCeE-----CccCCceeecCCCCEEEEEEc
Confidence            5789999998888543  333  4555543 234 222  111111   11110     1235789999  999999998


Q ss_pred             CCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCe-e-EEECCCCCEEEEEe
Q 027522           77 WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ-M-IQLSLDGKRLYVTN  153 (222)
Q Consensus        77 Rgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr-~-~~lspdGk~LyvaN  153 (222)
                      +. +.+.+|.++. . ++.+.++..                            |..    +. . +++||||++||+++
T Consensus       331 ~~-g~~~l~~~~~-~-~~~~~~l~~----------------------------~~~----~v~~~~~~spdg~~l~~~~  374 (706)
T 2z3z_A          331 RD-GWNHLYLYDT-T-GRLIRQVTK----------------------------GEW----EVTNFAGFDPKGTRLYFES  374 (706)
T ss_dssp             TT-SSCEEEEEET-T-SCEEEECCC----------------------------SSS----CEEEEEEECTTSSEEEEEE
T ss_pred             cC-CccEEEEEEC-C-CCEEEecCC----------------------------CCe----EEEeeeEEcCCCCEEEEEe
Confidence            74 5788888852 2 223222221                            222    33 2 79999999999988

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.23  E-value=1.4e-05  Score=76.05  Aligned_cols=118  Identities=11%  Similarity=0.143  Sum_probs=79.9

Q ss_pred             eEEEcC-CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEE-------cCCCCEEEEE
Q 027522            4 RFLHDP-SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLI-------SLDDRFLYFS   75 (222)
Q Consensus         4 r~afhP-~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~i-------SpDgrfLYvS   75 (222)
                      .++|+| +...+|+..+-...|.++... ++.++  ..+....   .+.      +.+..|.+       ++||++|||+
T Consensus       143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~-~~~v~--~l~~~~~---~~~------~~p~~ia~~~~~~~~d~~G~~lyva  210 (496)
T 3kya_A          143 RLAFDPLNKDHLYICYDGHKAIQLIDLK-NRMLS--SPLNINT---IPT------NRIRSIAFNKKIEGYADEAEYMIVA  210 (496)
T ss_dssp             EEEEETTEEEEEEEEEETEEEEEEEETT-TTEEE--EEECCTT---SSC------SBEEEEEECCCBTTTBCTTCEEEEE
T ss_pred             EEEEccCCCCEEEEEECCCCeEEEEECC-CCEEE--EEEccCc---ccc------CCCcEEEEeecccccCCCCCEEEEE
Confidence            689999 699999999987888888753 33332  1222211   111      45799999       9999999999


Q ss_pred             eCCCC----cEEEEEecCCCCCeEE-----EEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCC
Q 027522           76 NWLHG----DIRQYNIEDPKNPVLT-----GQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDG  146 (222)
Q Consensus        76 nRgh~----sI~vf~i~d~~~~~L~-----~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdG  146 (222)
                      ++..+    ..+++-++....+++.     ..+.                            .+++    |..++++|++
T Consensus       211 d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~----------------------------~~~~----p~giavdp~~  258 (496)
T 3kya_A          211 IDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA----------------------------AYKQ----CNGATIHPIN  258 (496)
T ss_dssp             ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE----------------------------EESC----CCCEEECTTT
T ss_pred             eCCCCCcccCceEEEEecCCCCceeecccceeec----------------------------cCCC----ceEEEEcCCC
Confidence            99763    3445555322212221     1111                            1345    9999999999


Q ss_pred             CEEEEEeCCCCccccccccccccCCcEEEEEEee
Q 027522          147 KRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       147 k~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd  180 (222)
                      ++||+++        .       .+..|+++|.+
T Consensus       259 g~LYvtd--------~-------~~g~V~r~d~~  277 (496)
T 3kya_A          259 GELYFNS--------Y-------EKGQVFRLDLV  277 (496)
T ss_dssp             CCEEEEE--------T-------TTTEEEEECHH
T ss_pred             CeEEEEE--------C-------CCCEEEEEecc
Confidence            9999999        3       56789999776

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.23  E-value=1.7e-05  Score=78.96  Aligned_cols=101  Identities=15%  Similarity=0.179  Sum_probs=72.0

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC-CcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH-GDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh-~sI~   83 (222)
                      +|+++.++.+|+...-..+|.++..+  |+.. ...+.   ..   -      ..+.+|+|+|.+++||++.|+. ..|.
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ld--G~~~-~~l~~---~~---l------~~P~gIaVDp~~g~LYwtD~g~~~~I~  540 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTK--GVKR-KTLFR---EN---G------SKPRAIVVDPVHGFMYWTDWGTPAKIK  540 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT--SSSE-EEEEE---CT---T------CCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCC--CCeE-EEEEe---CC---C------CCcceEEEecCCCCEEEecCCCCCeEE
Confidence            68888999999999989999999764  4432 11111   11   1      3469999999999999999986 7888


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                      +++++.  ..+.  .+-..                          +..+    |+-++|++++++||+|++
T Consensus       541 ~~~~dG--~~~~--~lv~~--------------------------~l~~----P~GLavD~~~~~LYwaD~  577 (791)
T 3m0c_C          541 KGGLNG--VDIY--SLVTE--------------------------NIQW----PNGITLDLLSGRLYWVDS  577 (791)
T ss_dssp             EEETTS--CCEE--EEECS--------------------------SCSC----EEEEEEETTTTEEEEEET
T ss_pred             EEecCC--CceE--EEEeC--------------------------CCCC----ceEEEEecCCCeEEEEeC
Confidence            887732  2211  11110                          1133    999999999999999983

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.23  E-value=1.8e-05  Score=63.00  Aligned_cols=99  Identities=13%  Similarity=0.038  Sum_probs=62.9

Q ss_pred             EEEcCCCCeEEEEecc---CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522            5 FLHDPSKDIGFVGCAL---ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD   81 (222)
Q Consensus         5 ~afhP~g~~aYvv~EL---sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s   81 (222)
                      ++|+|+|+++++...-   ...|+.+..+ .+..   +.  +...           .....+.+||||++|+++....+.
T Consensus        90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~-~~~~---~~--~~~~-----------~~~~~~~~spdg~~l~~~~~~~~~  152 (297)
T 2ojh_A           90 HGISPDGALYAISDKVEFGKSAIYLLPST-GGTP---RL--MTKN-----------LPSYWHGWSPDGKSFTYCGIRDQV  152 (297)
T ss_dssp             CEECTTSSEEEEEECTTTSSCEEEEEETT-CCCC---EE--CCSS-----------SSEEEEEECTTSSEEEEEEEETTE
T ss_pred             eEECCCCCEEEEEEeCCCCcceEEEEECC-CCce---EE--eecC-----------CCccceEECCCCCEEEEEECCCCc
Confidence            6899999998888743   3445555432 2321   11  1110           124778999999999977767788


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +.+|.++. ...+.. .+..                           ...    .++.++++|||++|+++.
T Consensus       153 ~~l~~~~~-~~~~~~-~~~~---------------------------~~~----~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          153 FDIYSMDI-DSGVET-RLTH---------------------------GEG----RNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             EEEEEEET-TTCCEE-ECCC---------------------------SSS----CEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEEC-CCCcce-Eccc---------------------------CCC----ccccceECCCCCEEEEEe
Confidence            89998843 223331 1110                           011    278899999999999876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.21  E-value=2.8e-05  Score=64.16  Aligned_cols=29  Identities=10%  Similarity=0.074  Sum_probs=26.2

Q ss_pred             eeEEEEc----CCCCEEEEEeCCCCcEEEEEec
Q 027522           60 ITDFLIS----LDDRFLYFSNWLHGDIRQYNIE   88 (222)
Q Consensus        60 ~adI~iS----pDgrfLYvSnRgh~sI~vf~i~   88 (222)
                      +..|.++    +||++||+++...+.|.+|+++
T Consensus       174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~  206 (314)
T 1pjx_A          174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK  206 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred             cceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence            4788999    9999999999988999999985

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.18  E-value=3.8e-06  Score=81.74  Aligned_cols=101  Identities=15%  Similarity=0.150  Sum_probs=69.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC-CcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH-GDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh-~sI~   83 (222)
                      +++++.+..+|+......+|.++..+  |+..  .+  +....   .      ..+.+|+++|++++||++.++. +.|.
T Consensus       458 lavD~~~g~LY~tD~~~~~I~v~d~d--g~~~--~~--l~~~~---~------~~P~giavDp~~g~ly~td~~~~~~I~  522 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGTVSVADTK--GVKR--KT--LFREQ---G------SKPRAIVVDPVHGFMYWTDWGTPAKIK  522 (699)
T ss_dssp             EECCCSSSBCEECCTTTSCEEEEBSS--SCCE--EE--ECCCS---S------CCCCCEECCSSSSCCEECCCSSSCCEE
T ss_pred             EEEEeeCCcEEEEeccCCeEEEEecC--CCce--EE--EEeCC---C------CCcceEEEccCCCcEEEcccCCCCeEE
Confidence            57777888999999989999888754  4321  11  11111   1      3358899999999999999986 7888


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                      +++++.. ..+.   +...                          +...    |+-++++|++++||+|++
T Consensus       523 ~~~~dG~-~~~~---l~~~--------------------------~l~~----PnGlavd~~~~~LY~aD~  559 (699)
T 1n7d_A          523 KGGLNGV-DIYS---LVTE--------------------------NIQW----PNGITLDLLSGRLYWVDS  559 (699)
T ss_dssp             BCCSSSC-CCCE---ESCS--------------------------SCSS----CCCEEECTTTCCEEEEET
T ss_pred             EEeCCCC-CeeE---EEeC--------------------------CCCC----ccEEEEeccCCEEEEEec
Confidence            8776321 1111   1100                          1223    999999999999999994

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.18  E-value=2.7e-05  Score=69.42  Aligned_cols=118  Identities=18%  Similarity=0.155  Sum_probs=69.1

Q ss_pred             eEEEcCCCCeEEEEeccCc--eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC-
Q 027522            4 RFLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG-   80 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELss--tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~-   80 (222)
                      -++|+|+|+++++....+.  .|+++..+ .++.   +  .+...  .        .....+.+||||++|+++....+ 
T Consensus       227 ~~~~spdg~~la~~~~~~g~~~i~~~d~~-~~~~---~--~l~~~--~--------~~~~~~~~spdg~~l~~~s~~~g~  290 (415)
T 2hqs_A          227 APAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQI---R--QVTDG--R--------SNNTEPTWFPDSQNLAFTSDQAGR  290 (415)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETT-TCCE---E--ECCCC--S--------SCEEEEEECTTSSEEEEEECTTSS
T ss_pred             CEEEcCCCCEEEEEEecCCCceEEEEECC-CCCE---E--eCcCC--C--------CcccceEECCCCCEEEEEECCCCC
Confidence            4689999997775554443  46666543 3432   1  12110  1        34578999999998887664344 


Q ss_pred             -cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcc
Q 027522           81 -DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAW  159 (222)
Q Consensus        81 -sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~w  159 (222)
                       .|.+|++..   +++ .++..                           .+..    ...+++||||++|+++.      
T Consensus       291 ~~i~~~d~~~---~~~-~~l~~---------------------------~~~~----~~~~~~spdG~~l~~~~------  329 (415)
T 2hqs_A          291 PQVYKVNING---GAP-QRITW---------------------------EGSQ----NQDADVSSDGKFMVMVS------  329 (415)
T ss_dssp             CEEEEEETTS---SCC-EECCC---------------------------SSSE----EEEEEECTTSSEEEEEE------
T ss_pred             cEEEEEECCC---CCE-EEEec---------------------------CCCc----ccCeEECCCCCEEEEEE------
Confidence             455555532   222 11111                           1222    56789999999999887      


Q ss_pred             ccccccccccCCcEEEEEEeeCCCCCee
Q 027522          160 DCQFYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       160 d~Q~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                        +.     .....|..+|.  ++|.+.
T Consensus       330 --~~-----~g~~~i~~~d~--~~~~~~  348 (415)
T 2hqs_A          330 --SN-----GGQQHIAKQDL--ATGGVQ  348 (415)
T ss_dssp             --EC-----SSCEEEEEEET--TTCCEE
T ss_pred             --Cc-----CCceEEEEEEC--CCCCEE
Confidence              32     12356666754  566663

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.18  E-value=8.5e-05  Score=60.74  Aligned_cols=105  Identities=9%  Similarity=0.086  Sum_probs=69.0

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|+++++++..  +.+|.+|..+...............  .        ......+.+|||+++|+++.. .+.|.
T Consensus        56 ~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~--~--------~~~v~~~~~~~~~~~l~~~~~-d~~i~  122 (337)
T 1gxr_A           56 AVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLN--R--------DNYIRSCKLLPDGCTLIVGGE-ASTLS  122 (337)
T ss_dssp             EEEECSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEECSC--T--------TSBEEEEEECTTSSEEEEEES-SSEEE
T ss_pred             EEEEecCCcEEEEcC--CCeEEEEECCCCCceeeeecccccC--C--------CCcEEEEEEcCCCCEEEEEcC-CCcEE
Confidence            368999999999887  8999999875332222222222111  1        145789999999999988764 57899


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++.. ...+.......                           ...    ....++++|+|++|+++.
T Consensus       123 ~~d~~~-~~~~~~~~~~~---------------------------~~~----~i~~~~~~~~~~~l~~~~  160 (337)
T 1gxr_A          123 IWDLAA-PTPRIKAELTS---------------------------SAP----ACYALAISPDSKVCFSCC  160 (337)
T ss_dssp             EEECCC-C--EEEEEEEC---------------------------SSS----CEEEEEECTTSSEEEEEE
T ss_pred             EEECCC-CCcceeeeccc---------------------------CCC----ceEEEEECCCCCEEEEEe
Confidence            999954 33323222211                           011    157899999999999886

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.18  E-value=9.2e-05  Score=62.04  Aligned_cols=102  Identities=19%  Similarity=0.091  Sum_probs=55.9

Q ss_pred             EEEcCCCCeEEEEeccC----ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC--
Q 027522            5 FLHDPSKDIGFVGCALA----STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL--   78 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELs----stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg--   78 (222)
                      ++++|+|+ .|+.+.-+    ..|.++..+ .+.+.  ..+....   .       ...+.+|.++|||++++.+..+  
T Consensus        92 i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~-~~~~~--~~~~~~~---~-------~~~~~~i~~d~~g~l~v~~~~~~~  157 (333)
T 2dg1_A           92 IKIHKDGR-LFVCYLGDFKSTGGIFAATEN-GDNLQ--DIIEDLS---T-------AYCIDDMVFDSKGGFYFTDFRGYS  157 (333)
T ss_dssp             EEECTTSC-EEEEECTTSSSCCEEEEECTT-SCSCE--EEECSSS---S-------CCCEEEEEECTTSCEEEEECCCBT
T ss_pred             EEECCCCc-EEEEeCCCCCCCceEEEEeCC-CCEEE--EEEccCc---c-------CCcccceEECCCCCEEEEeccccc
Confidence            56778875 45554433    467666442 23332  1111110   1       1456899999999754444322  


Q ss_pred             -CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           79 -HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        79 -h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                       .....+|.++ +...++.. +.. +                          ...    |+.++++|||++||+++
T Consensus       158 ~~~~~~l~~~~-~~~~~~~~-~~~-~--------------------------~~~----~~~i~~~~dg~~l~v~~  200 (333)
T 2dg1_A          158 TNPLGGVYYVS-PDFRTVTP-IIQ-N--------------------------ISV----ANGIALSTDEKVLWVTE  200 (333)
T ss_dssp             TBCCEEEEEEC-TTSCCEEE-EEE-E--------------------------ESS----EEEEEECTTSSEEEEEE
T ss_pred             cCCCceEEEEe-CCCCEEEE-eec-C--------------------------CCc----ccceEECCCCCEEEEEe
Confidence             1235566663 33333321 111 0                          112    88999999999999998

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.16  E-value=5.2e-05  Score=64.59  Aligned_cols=60  Identities=25%  Similarity=0.473  Sum_probs=44.8

Q ss_pred             eeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCee
Q 027522           60 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM  139 (222)
Q Consensus        60 ~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~  139 (222)
                      +..|.+|+||++|||++.+.+.|.+|+++....+..  ++..                              .+.| |+.
T Consensus       187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~--~~~~------------------------------~~~g-P~g  233 (322)
T 2fp8_A          187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA--EVLV------------------------------KIPN-PGN  233 (322)
T ss_dssp             CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE--EEEE------------------------------ECSS-EEE
T ss_pred             CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc--ceEE------------------------------eCCC-CCC
Confidence            478999999999999999999999999854221221  0010                              1234 999


Q ss_pred             EEECCCCCEEEEEe
Q 027522          140 IQLSLDGKRLYVTN  153 (222)
Q Consensus       140 ~~lspdGk~LyvaN  153 (222)
                      ++++++|+ ||||+
T Consensus       234 i~~d~~G~-l~va~  246 (322)
T 2fp8_A          234 IKRNADGH-FWVSS  246 (322)
T ss_dssp             EEECTTSC-EEEEE
T ss_pred             eEECCCCC-EEEEe
Confidence            99999997 89997

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.16  E-value=0.00011  Score=64.15  Aligned_cols=105  Identities=10%  Similarity=0.061  Sum_probs=65.8

Q ss_pred             eEEEcCCCCeEEEEeccCc---eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            4 RFLHDPSKDIGFVGCALAS---TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELss---tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      .++|+|+++++.+.+.-..   +|..+.. ..+.....+...+..     .     ......|.+||||++|.++. .++
T Consensus       224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~-~~~~~~~~~~~~~~~-----~-----~~~V~~~~~Spdg~~lasgs-~D~  291 (365)
T 4h5i_A          224 KINFIADDTVLIAASLKKGKGIVLTKISI-KSGNTSVLRSKQVTN-----R-----FKGITSMDVDMKGELAVLAS-NDN  291 (365)
T ss_dssp             EEEEEETTEEEEEEEESSSCCEEEEEEEE-ETTEEEEEEEEEEES-----S-----CSCEEEEEECTTSCEEEEEE-TTS
T ss_pred             EEEEcCCCCEEEEEecCCcceeEEeeccc-ccceecceeeeeecC-----C-----CCCeEeEEECCCCCceEEEc-CCC
Confidence            3679999998888776443   3444433 223333333333321     1     03468899999999997766 478


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|.+|++..   ++++.++..                            |..  +....+++||||++|..+.
T Consensus       292 ~V~iwd~~~---~~~~~~~~~----------------------------gH~--~~V~~v~fSpdg~~laS~S  331 (365)
T 4h5i_A          292 SIALVKLKD---LSMSKIFKQ----------------------------AHS--FAITEVTISPDSTYVASVS  331 (365)
T ss_dssp             CEEEEETTT---TEEEEEETT----------------------------SSS--SCEEEEEECTTSCEEEEEE
T ss_pred             EEEEEECCC---CcEEEEecC----------------------------ccc--CCEEEEEECCCCCEEEEEe
Confidence            999999843   555433321                            111  1257899999999887665

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.14  E-value=0.00012  Score=59.31  Aligned_cols=114  Identities=10%  Similarity=0.132  Sum_probs=76.4

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++++|+|+ +|+.+..++.|.++..  +|++..   +..+ ..   .      ..+..|.+++|| .||++++..+.|.
T Consensus       150 ~i~~d~~g~-l~v~~~~~~~i~~~~~--~g~~~~---~~~~-~~---~------~~~~~i~~d~~g-~l~v~~~~~~~i~  212 (300)
T 2qc5_A          150 FITLGSDNA-LWFTENQNNSIGRITN--TGKLEE---YPLP-TN---A------AAPVGITSGNDG-ALWFVEIMGNKIG  212 (300)
T ss_dssp             EEEECTTSS-EEEEETTTTEEEEECT--TCCEEE---EECS-ST---T------CCEEEEEECTTS-SEEEEETTTTEEE
T ss_pred             eEEECCCCC-EEEEecCCCeEEEECC--CCcEEE---eeCC-CC---C------CCcceEEECCCC-CEEEEccCCCEEE
Confidence            467889988 8998888888888864  455542   2222 11   1      456899999998 5899999888888


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccc
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQF  163 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~  163 (222)
                      +|+.    .+++.. +..                     |.    ....    |+.++++++|+ |||++        . 
T Consensus       213 ~~~~----~g~~~~-~~~---------------------~~----~~~~----~~~i~~d~~g~-l~v~~--------~-  248 (300)
T 2qc5_A          213 RITT----TGEISE-YDI---------------------PT----PNAR----PHAITAGKNSE-IWFTE--------W-  248 (300)
T ss_dssp             EECT----TCCEEE-EEC---------------------SS----TTCC----EEEEEECSTTC-EEEEE--------T-
T ss_pred             EEcC----CCcEEE-EEC---------------------CC----CCCC----ceEEEECCCCC-EEEec--------c-
Confidence            8854    233321 111                     00    1233    99999999997 99998        2 


Q ss_pred             ccccccCCcEEEEEEeeCCCCCee
Q 027522          164 YPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       164 yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                            .+..|.++|.   +|.+.
T Consensus       249 ------~~~~i~~~~~---~g~~~  263 (300)
T 2qc5_A          249 ------GANQIGRITN---DNTIQ  263 (300)
T ss_dssp             ------TTTEEEEECT---TSCEE
T ss_pred             ------CCCeEEEECC---CCcEE
Confidence                  4567788744   46543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.14  E-value=0.00022  Score=58.23  Aligned_cols=101  Identities=19%  Similarity=0.219  Sum_probs=68.7

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++++.++ +++|.+|..+ +++..........    .        .....+.++||+++|++++. .+.|.
T Consensus       102 ~~~~~~~~~~l~~~~~-d~~i~~~d~~-~~~~~~~~~~~~~----~--------~~i~~~~~~~~~~~l~~~~~-dg~v~  166 (337)
T 1gxr_A          102 SCKLLPDGCTLIVGGE-ASTLSIWDLA-APTPRIKAELTSS----A--------PACYALAISPDSKVCFSCCS-DGNIA  166 (337)
T ss_dssp             EEEECTTSSEEEEEES-SSEEEEEECC-CC--EEEEEEECS----S--------SCEEEEEECTTSSEEEEEET-TSCEE
T ss_pred             EEEEcCCCCEEEEEcC-CCcEEEEECC-CCCcceeeecccC----C--------CceEEEEECCCCCEEEEEeC-CCcEE
Confidence            4789999999888875 6788888764 3333222222211    1        34689999999999998875 57899


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++.+..+..                           ...    ..+.++++|+|++|+++.
T Consensus       167 ~~d~~~---~~~~~~~~~---------------------------~~~----~i~~~~~~~~~~~l~~~~  202 (337)
T 1gxr_A          167 VWDLHN---QTLVRQFQG---------------------------HTD----GASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             EEETTT---TEEEEEECC---------------------------CSS----CEEEEEECTTSSEEEEEE
T ss_pred             EEeCCC---Cceeeeeec---------------------------ccC----ceEEEEECCCCCEEEEEe
Confidence            999843   444333221                           011    278899999999999886

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.13  E-value=2e-05  Score=76.01  Aligned_cols=99  Identities=11%  Similarity=0.146  Sum_probs=70.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC-CCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL-HGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg-h~sI~   83 (222)
                      +|+++.++.+|+...-...|.++..+  |+..  +++  .....         ..+.+|+++|...+||++.|+ .+.|.
T Consensus        85 lAvD~~~~~LY~tD~~~~~I~v~~~d--G~~~--~~l--~~~~l---------~~P~~iavdp~~G~lY~tD~g~~~~I~  149 (628)
T 4a0p_A           85 MAVDWLGKNLYWADTGTNRIEVSKLD--GQHR--QVL--VWKDL---------DSPRALALDPAEGFMYWTEWGGKPKID  149 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT--STTC--EEE--ECSSC---------CCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEecC--CCcE--EEE--EeCCC---------CCcccEEEccCCCeEEEeCCCCCCEEE
Confidence            67788889999999988999999864  4432  121  11111         457999999999999999998 67788


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +++.+. ...+.   +-.                           ...+    |+-+++++++++||+|+
T Consensus       150 r~~~dG-~~~~~---l~~---------------------------~~~~----P~GlalD~~~~~LY~aD  184 (628)
T 4a0p_A          150 RAAMDG-SERTT---LVP---------------------------NVGR----ANGLTIDYAKRRLYWTD  184 (628)
T ss_dssp             EEETTS-CSCEE---EEC---------------------------SCSS----EEEEEEETTTTEEEEEE
T ss_pred             EEeCCC-CceEE---EEC---------------------------CCCC----cceEEEccccCEEEEEE
Confidence            777632 22222   111                           1234    99999999999999999

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.11  E-value=2.7e-05  Score=71.86  Aligned_cols=71  Identities=10%  Similarity=0.094  Sum_probs=45.1

Q ss_pred             eEEEcCCCCeEEEEeccC---------ceEEEEEeCCC-----CCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCC
Q 027522            4 RFLHDPSKDIGFVGCALA---------STMVRFSKTQD-----GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDD   69 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELs---------stV~~~~~d~~-----g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDg   69 (222)
                      -++|+|||++++..++-.         .+|+++..+..     |...   .  +...   +      +.....+.+||||
T Consensus       134 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~--l~~~---~------~~~~~~~~~SpDG  199 (662)
T 3azo_A          134 DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR---E--LSDD---A------HRFVTGPRLSPDG  199 (662)
T ss_dssp             EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE---E--SSCS---C------SSEECCCEECTTS
T ss_pred             CcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee---E--EEec---C------CCcccCceECCCC
Confidence            368999999988887641         45666654321     3221   1  1100   1      1345678999999


Q ss_pred             CEEEEEeCCC-------CcEEEEEec
Q 027522           70 RFLYFSNWLH-------GDIRQYNIE   88 (222)
Q Consensus        70 rfLYvSnRgh-------~sI~vf~i~   88 (222)
                      |+|+.+.+.+       ..|.+++++
T Consensus       200 ~~la~~~~~~~~~~~~~~~i~~~d~~  225 (662)
T 3azo_A          200 RQAVWLAWDHPRMPWEGTELKTARVT  225 (662)
T ss_dssp             SEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred             CEEEEEECCCCCCCCCCcEEEEEEEC
Confidence            9998766544       479999885

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.10  E-value=3.3e-05  Score=72.08  Aligned_cols=113  Identities=14%  Similarity=0.074  Sum_probs=66.2

Q ss_pred             eEEEcCCCCeEEEEeccCc-----eEEEEEeCCCCCeeEEEEEEecCcccc-------cccC---CCC--CCceeEEEEc
Q 027522            4 RFLHDPSKDIGFVGCALAS-----TMVRFSKTQDGSWNHEVAISVKSLKVQ-------NWIL---PEM--PGLITDFLIS   66 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELss-----tV~~~~~d~~g~~~~~q~is~~p~~~~-------g~~~---~~~--~~~~adI~iS   66 (222)
                      .++|+|||++++.++.-+.     +|+++..+ +|+.  .+..........       +...   ..+  ......+.+|
T Consensus        41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~-~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S  117 (741)
T 2ecf_A           41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIG-SGQT--RLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS  117 (741)
T ss_dssp             EEEECTTSSEEEEEECCSSCTTEEEEEEEETT-TCCE--EEEECGGGTC--------------------CCEESCCCEEC
T ss_pred             CceEecCCCEEEEEeccCCCCcccEEEEEECC-CCce--eEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence            4789999999888887444     78777653 3433  233322100000       0000   000  0124688999


Q ss_pred             CCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCC
Q 027522           67 LDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDG  146 (222)
Q Consensus        67 pDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdG  146 (222)
                      |||++|+++..  +.|.+|++.....+++. ++..                           .+.    .++.+++||||
T Consensus       118 pDg~~l~~~~~--~~i~~~d~~~~~~~~~~-~l~~---------------------------~~~----~~~~~~~SPDG  163 (741)
T 2ecf_A          118 PDAQRLLFPLG--GELYLYDLKQEGKAAVR-QLTH---------------------------GEG----FATDAKLSPKG  163 (741)
T ss_dssp             TTSSEEEEEET--TEEEEEESSSCSTTSCC-BCCC---------------------------SSS----CEEEEEECTTS
T ss_pred             CCCCEEEEEeC--CcEEEEECCCCCcceEE-Eccc---------------------------CCc----ccccccCCCCC
Confidence            99999998886  88999998542101220 0010                           012    27889999999


Q ss_pred             CEEEEEe
Q 027522          147 KRLYVTN  153 (222)
Q Consensus       147 k~LyvaN  153 (222)
                      ++|+.+.
T Consensus       164 ~~la~~~  170 (741)
T 2ecf_A          164 GFVSFIR  170 (741)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEe
Confidence            9988775

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.09  E-value=0.00019  Score=59.18  Aligned_cols=98  Identities=9%  Similarity=0.040  Sum_probs=69.2

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++++..+ +.+|.+|... +++.  .+.+..    ..        .....|.+|||+++|+++.. .+.|.
T Consensus        37 ~~~~s~~~~~l~~~~~-dg~i~vwd~~-~~~~--~~~~~~----h~--------~~v~~~~~~~~~~~l~s~~~-dg~i~   99 (369)
T 3zwl_B           37 QVKYNKEGDLLFSCSK-DSSASVWYSL-NGER--LGTLDG----HT--------GTIWSIDVDCFTKYCVTGSA-DYSIK   99 (369)
T ss_dssp             EEEECTTSCEEEEEES-SSCEEEEETT-TCCE--EEEECC----CS--------SCEEEEEECTTSSEEEEEET-TTEEE
T ss_pred             EEEEcCCCCEEEEEeC-CCEEEEEeCC-Cchh--hhhhhh----cC--------CcEEEEEEcCCCCEEEEEeC-CCeEE
Confidence            4789999999888875 6788888764 3322  222211    11        44689999999999987764 67899


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++.+..+..                            ...    ...++++|+|++|+++.
T Consensus       100 iwd~~~---~~~~~~~~~----------------------------~~~----v~~~~~~~~~~~l~~~~  134 (369)
T 3zwl_B          100 LWDVSN---GQCVATWKS----------------------------PVP----VKRVEFSPCGNYFLAIL  134 (369)
T ss_dssp             EEETTT---CCEEEEEEC----------------------------SSC----EEEEEECTTSSEEEEEE
T ss_pred             EEECCC---CcEEEEeec----------------------------CCC----eEEEEEccCCCEEEEec
Confidence            999853   444433332                            122    77899999999999987

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.07  E-value=7.5e-05  Score=66.86  Aligned_cols=100  Identities=15%  Similarity=0.160  Sum_probs=70.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|++....+|+.......|.++..+  |+. .+.++.   .   +.      ..+..|++++.++.||++..+.+.|.+
T Consensus       121 l~~d~~~~~ly~~D~~~~~I~r~~~~--g~~-~~~~~~---~---~~------~~p~glavd~~~g~lY~~d~~~~~I~~  185 (386)
T 3v65_B          121 LDFHHRRELVFWSDVTLDRILRANLN--GSN-VEEVVS---T---GL------ESPGGLAVDWVHDKLYWTDSGTSRIEV  185 (386)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT--SCC-EEEEEC---S---SC------SCCCCEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEecCCCeEEEEeCCCCcEEEEecC--CCC-cEEEEe---C---CC------CCccEEEEEeCCCeEEEEcCCCCeEEE
Confidence            78999999999999999999999764  322 112221   1   11      234789999999999999999998988


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ++.+. ...+.   +...+                          -..    |+.++++|++.+||+++
T Consensus       186 ~~~dg-~~~~~---l~~~~--------------------------l~~----P~giavdp~~g~ly~td  220 (386)
T 3v65_B          186 ANLDG-AHRKV---LLWQS--------------------------LEK----PRAIALHPMEGTIYWTD  220 (386)
T ss_dssp             CBTTS-CSCEE---EECSS--------------------------CSC----EEEEEEETTTTEEEEEE
T ss_pred             EeCCC-CceEE---eecCC--------------------------CCC----CcEEEEEcCCCeEEEec
Confidence            87632 11111   11110                          123    99999999999999998

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.07  E-value=0.00017  Score=58.44  Aligned_cols=109  Identities=12%  Similarity=0.127  Sum_probs=72.2

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++++|+| .+|+.+..++.|.++..  +|++..   +.++ .   +.      ..+..|.+++||+ ||++++..+.|.
T Consensus       145 ~i~~~~~g-~l~v~~~~~~~i~~~~~--~g~~~~---~~~~-~---~~------~~~~~i~~~~~g~-l~v~~~~~~~i~  207 (299)
T 2z2n_A          145 FITLGSDN-ALWFTENQNNAIGRITE--SGDITE---FKIP-T---PA------SGPVGITKGNDDA-LWFVEIIGNKIG  207 (299)
T ss_dssp             EEEECTTS-CEEEEETTTTEEEEECT--TCCEEE---EECS-S---TT------CCEEEEEECTTSS-EEEEETTTTEEE
T ss_pred             eEEEcCCC-CEEEEeCCCCEEEEEcC--CCcEEE---eeCC-C---CC------CcceeEEECCCCC-EEEEccCCceEE
Confidence            36778887 57887776788888754  455432   2222 1   11      4468999999998 899999888898


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccc
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQF  163 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~  163 (222)
                      +|+.    ++++. .+....                         ....    |+.++++++|+ |||++          
T Consensus       208 ~~~~----~g~~~-~~~~~~-------------------------~~~~----~~~i~~~~~g~-l~v~~----------  242 (299)
T 2z2n_A          208 RITT----SGEIT-EFKIPT-------------------------PNAR----PHAITAGAGID-LWFTE----------  242 (299)
T ss_dssp             EECT----TCCEE-EEECSS-------------------------TTCC----EEEEEECSTTC-EEEEE----------
T ss_pred             EECC----CCcEE-EEECCC-------------------------CCCC----ceeEEECCCCC-EEEec----------
Confidence            8865    23332 122100                         1223    99999999997 99998          


Q ss_pred             ccccccCCcEEEEEEe
Q 027522          164 YPELKEKGSHMLQIDV  179 (222)
Q Consensus       164 yp~~~s~~~~i~~~dv  179 (222)
                           ..+..|.++|.
T Consensus       243 -----~~~~~i~~~d~  253 (299)
T 2z2n_A          243 -----WGANKIGRLTS  253 (299)
T ss_dssp             -----TTTTEEEEEET
T ss_pred             -----cCCceEEEECC
Confidence                 24567777854

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.07  E-value=0.00018  Score=64.14  Aligned_cols=99  Identities=13%  Similarity=-0.019  Sum_probs=62.5

Q ss_pred             eEEEcCCCCeEEEEeccC--ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC--
Q 027522            4 RFLHDPSKDIGFVGCALA--STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH--   79 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELs--stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh--   79 (222)
                      -++|+|+|++++.+..-+  .+|.++... +|+..  + +.-.    .        .....+.+||||++|+++....  
T Consensus       183 ~~~~Spdg~~la~~s~~~~~~~i~~~d~~-tg~~~--~-l~~~----~--------~~~~~~~~spdg~~la~~~~~~g~  246 (415)
T 2hqs_A          183 SPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVR--Q-VASF----P--------RHNGAPAFSPDGSKLAFALSKTGS  246 (415)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETT-TCCEE--E-EECC----S--------SCEEEEEECTTSSEEEEEECTTSS
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECC-CCcEE--E-eecC----C--------CcccCEEEcCCCCEEEEEEecCCC
Confidence            468999999887777543  478877653 44432  2 2111    1        3357899999999998665433  


Q ss_pred             CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           80 GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        80 ~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ..|.+|++..   +++. ++...                           ..    ....+++||||++|+++.
T Consensus       247 ~~i~~~d~~~---~~~~-~l~~~---------------------------~~----~~~~~~~spdg~~l~~~s  285 (415)
T 2hqs_A          247 LNLYVMDLAS---GQIR-QVTDG---------------------------RS----NNTEPTWFPDSQNLAFTS  285 (415)
T ss_dssp             CEEEEEETTT---CCEE-ECCCC---------------------------SS----CEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCC---CCEE-eCcCC---------------------------CC----cccceEECCCCCEEEEEE
Confidence            4488887732   3331 11110                           11    256789999999999886

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.07  E-value=0.00019  Score=63.37  Aligned_cols=135  Identities=16%  Similarity=0.069  Sum_probs=87.8

Q ss_pred             EEEcCCCCeEEEEeccC-ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALA-STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELs-stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ++++|.+.++|+...-. ..|.++..+  |+..  +  .+....   -      ..+..|.++|+++.||++.++.+.|.
T Consensus       164 iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~--~--~~~~~~---~------~~PnGla~d~~~~~lY~aD~~~~~I~  228 (349)
T 3v64_C          164 IALHPMEGTIYWTDWGNTPRIEASSMD--GSGR--R--IIADTH---L------FWPNGLTIDYAGRRMYWVDAKHHVIE  228 (349)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETT--SCSC--E--ESCCSS---C------SCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEecCcCeEEEeccCCCCEEEEEeCC--CCCc--E--EEEECC---C------CCcceEEEeCCCCEEEEEECCCCEEE
Confidence            57899999999998777 889988765  3321  1  111111   1      45689999999999999999999999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccc
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQF  163 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~  163 (222)
                      +|+.+. ...+.   +...                          ...+    |.-+++  ++.+||+|+          
T Consensus       229 ~~~~dG-~~~~~---~~~~--------------------------~~~~----P~giav--~~~~ly~td----------  262 (349)
T 3v64_C          229 RANLDG-SHRKA---VISQ--------------------------GLPH----PFAITV--FEDSLYWTD----------  262 (349)
T ss_dssp             EEETTS-CSCEE---EECS--------------------------SCSS----EEEEEE--ETTEEEEEE----------
T ss_pred             EEeCCC-CceEE---EEeC--------------------------CCCC----ceEEEE--ECCEEEEec----------
Confidence            998843 22221   1110                          0123    888898  567999999          


Q ss_pred             ccccccCCcEEEEEEeeCCCCCee--eccceeEecCCCCCCCcceeeeecC
Q 027522          164 YPELKEKGSHMLQIDVNSEKGGMA--INPNFFVDFEAEPDGPALAHEMRYP  212 (222)
Q Consensus       164 yp~~~s~~~~i~~~dvd~~~G~l~--~~~~f~vdf~~~~~g~~~~h~~r~~  212 (222)
                           ..+..|.++|  ..+|+..  +..     -...|.|-..-|.-|-|
T Consensus       263 -----~~~~~V~~~~--~~~G~~~~~i~~-----~~~~p~gi~v~~~~~qp  301 (349)
T 3v64_C          263 -----WHTKSINSAN--KFTGKNQEIIRN-----KLHFPMDIHTLHPQRQP  301 (349)
T ss_dssp             -----TTTTEEEEEE--TTTCCSCEEEEC-----SCSCCCCEEEECGGGSC
T ss_pred             -----CCCCeEEEEE--ccCCCccEEecc-----CCCCCceEEEEccccCc
Confidence                 3577888884  4566531  211     12345565555655554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.02  E-value=8.2e-05  Score=68.04  Aligned_cols=114  Identities=10%  Similarity=0.044  Sum_probs=67.0

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEE-eCCC--Cc
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS-NWLH--GD   81 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvS-nRgh--~s   81 (222)
                      ++|+|+|+..+++......+.+|..+ +|+.  ++....+             .  .++.+|||||+|+.+ ++..  .+
T Consensus       115 ~~~s~dg~~~~~~s~~~~~~~l~d~~-~g~~--~~l~~~~-------------~--~~~~~spDG~~la~~~~~~~~~~~  176 (582)
T 3o4h_A          115 LSGVDTGEAVVFTGATEDRVALYALD-GGGL--RELARLP-------------G--FGFVSDIRGDLIAGLGFFGGGRVS  176 (582)
T ss_dssp             EEEEECSSCEEEEEECSSCEEEEEEE-TTEE--EEEEEES-------------S--CEEEEEEETTEEEEEEEEETTEEE
T ss_pred             eeeCCCCCeEEEEecCCCCceEEEcc-CCcE--EEeecCC-------------C--ceEEECCCCCEEEEEEEcCCCCeE
Confidence            47899998766666666666666553 3432  2221110             1  678999999999954 4433  34


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC  161 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~  161 (222)
                      |.+++++.   +++. ++.. .                          ...    .+.+++||||++|+.+.        
T Consensus       177 i~~~d~~~---g~~~-~l~~-~--------------------------~~~----~~~~~~SpDG~~l~~~~--------  213 (582)
T 3o4h_A          177 LFTSNLSS---GGLR-VFDS-G--------------------------EGS----FSSASISPGMKVTAGLE--------  213 (582)
T ss_dssp             EEEEETTT---CCCE-EECC-S--------------------------SCE----EEEEEECTTSCEEEEEE--------
T ss_pred             EEEEcCCC---CCce-Eeec-C--------------------------CCc----cccceECCCCCEEEEcc--------
Confidence            55565532   3221 1111 0                          011    57889999999999444        


Q ss_pred             ccccccccCCcEEEEEEeeCCCCCee
Q 027522          162 QFYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       162 Q~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                      .      ....+|+.+|+  ++|.++
T Consensus       214 ~------~~~~~i~~~d~--~~~~~~  231 (582)
T 3o4h_A          214 T------AREARLVTVDP--RDGSVE  231 (582)
T ss_dssp             C------SSCEEEEEECT--TTCCEE
T ss_pred             C------CCeeEEEEEcC--CCCcEE
Confidence            2      12347777754  677765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.01  E-value=0.00019  Score=65.80  Aligned_cols=139  Identities=14%  Similarity=0.122  Sum_probs=82.3

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEE-Ee-cCcccc-cccCCCCCCceeEEEEc--------CCCCEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAI-SV-KSLKVQ-NWILPEMPGLITDFLIS--------LDDRFL   72 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~i-s~-~p~~~~-g~~~~~~~~~~adI~iS--------pDgrfL   72 (222)
                      ++|+|+|+++|+....++.|.++.++. .+.+....++ -. ....+. |......-+.+..|.+.        .++..|
T Consensus       278 ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~l  357 (433)
T 4hw6_A          278 IVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDF  357 (433)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEE
T ss_pred             EEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcE
Confidence            899999999999999999999999873 3554322222 11 111111 10000011457889993        455579


Q ss_pred             EEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccC----cccCCCCeeEEECCCCCE
Q 027522           73 YFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQG----HRLRGGPQMIQLSLDGKR  148 (222)
Q Consensus        73 YvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G----~~~~ggPr~~~lspdGk~  148 (222)
                      ||+.++.+.|++|+   + .+++. .+.-.|.                 +.......|    ...-..|+-++++|+...
T Consensus       358 yvaD~~n~~I~~~~---~-~G~v~-t~~G~g~-----------------~~~~G~~dG~~~~~~~~~~P~giavd~~~g~  415 (433)
T 4hw6_A          358 YFCDRDSHTVRVLT---P-EGRVT-TYAGRGN-----------------SREWGYVDGELRSQALFNHPTSIAYDMKRKC  415 (433)
T ss_dssp             EEEETTTTEEEEEC---T-TSEEE-EEECCCT-----------------TCSSCCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred             EEEECCCCEEEEEC---C-CCCEE-EEEeCCC-----------------CCccccCCCccccccEeCCCcEEEEECCCCE
Confidence            99999999999884   3 34442 1111010                 000000011    000013999999977778


Q ss_pred             EEEEeCCCCccccccccccccCCcEEEEEEee
Q 027522          149 LYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       149 LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd  180 (222)
                      ||||+               +.|..|.+++.+
T Consensus       416 lyVaD---------------~~n~rIr~i~~e  432 (433)
T 4hw6_A          416 FYIGD---------------CDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEE---------------GGGTEEEEEEEC
T ss_pred             EEEEe---------------CCCCEEEEEecC
Confidence            99999               457888888653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.99  E-value=0.00027  Score=57.31  Aligned_cols=107  Identities=8%  Similarity=0.193  Sum_probs=72.9

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++++|+| .+|+.+.-++.|.++..  +|++..   ..++ .   +.      ..+..|.++++|+ ||+++++.+.|.
T Consensus       192 ~i~~d~~g-~l~v~~~~~~~i~~~~~--~g~~~~---~~~~-~---~~------~~~~~i~~d~~g~-l~v~~~~~~~i~  254 (300)
T 2qc5_A          192 GITSGNDG-ALWFVEIMGNKIGRITT--TGEISE---YDIP-T---PN------ARPHAITAGKNSE-IWFTEWGANQIG  254 (300)
T ss_dssp             EEEECTTS-SEEEEETTTTEEEEECT--TCCEEE---EECS-S---TT------CCEEEEEECSTTC-EEEEETTTTEEE
T ss_pred             eEEECCCC-CEEEEccCCCEEEEEcC--CCcEEE---EECC-C---CC------CCceEEEECCCCC-EEEeccCCCeEE
Confidence            46788887 57888877788888854  455432   2222 1   11      4568999999998 999999989999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccc
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQF  163 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~  163 (222)
                      +|+.    ++++. .+...                         .....    |+.++++++|+ ||+++          
T Consensus       255 ~~~~----~g~~~-~~~~~-------------------------~~~~~----~~~i~~~~~g~-l~v~~----------  289 (300)
T 2qc5_A          255 RITN----DNTIQ-EYQLQ-------------------------TENAE----PHGITFGKDGS-VWFAL----------  289 (300)
T ss_dssp             EECT----TSCEE-EEECC-------------------------STTCC----CCCEEECTTSC-EEEEC----------
T ss_pred             EECC----CCcEE-EEECC-------------------------ccCCc----cceeEeCCCCC-EEEEc----------
Confidence            9865    23332 11110                         01223    99999999997 99998          


Q ss_pred             ccccccCCcEEEEEEe
Q 027522          164 YPELKEKGSHMLQIDV  179 (222)
Q Consensus       164 yp~~~s~~~~i~~~dv  179 (222)
                           . + .|+++|.
T Consensus       290 -----~-~-~i~~~~p  298 (300)
T 2qc5_A          290 -----K-C-KIGKLNL  298 (300)
T ss_dssp             -----S-S-EEEEEEE
T ss_pred             -----c-C-ceEEeCC
Confidence                 4 5 7888865

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.98  E-value=0.0003  Score=56.98  Aligned_cols=67  Identities=9%  Similarity=0.131  Sum_probs=49.7

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++++|+|+ +|+.+..++.|.++..  +|++.   .+.++ .   +.      ..+..|.+++||+ ||++++..+.|.
T Consensus       187 ~i~~~~~g~-l~v~~~~~~~i~~~~~--~g~~~---~~~~~-~---~~------~~~~~i~~~~~g~-l~v~~~~~~~i~  249 (299)
T 2z2n_A          187 GITKGNDDA-LWFVEIIGNKIGRITT--SGEIT---EFKIP-T---PN------ARPHAITAGAGID-LWFTEWGANKIG  249 (299)
T ss_dssp             EEEECTTSS-EEEEETTTTEEEEECT--TCCEE---EEECS-S---TT------CCEEEEEECSTTC-EEEEETTTTEEE
T ss_pred             eEEECCCCC-EEEEccCCceEEEECC--CCcEE---EEECC-C---CC------CCceeEEECCCCC-EEEeccCCceEE
Confidence            467889887 7888887888888865  45543   22222 1   11      4568999999998 999999989999


Q ss_pred             EEEe
Q 027522           84 QYNI   87 (222)
Q Consensus        84 vf~i   87 (222)
                      +|+.
T Consensus       250 ~~d~  253 (299)
T 2z2n_A          250 RLTS  253 (299)
T ss_dssp             EEET
T ss_pred             EECC
Confidence            9976

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.97  E-value=1.5e-05  Score=67.71  Aligned_cols=130  Identities=9%  Similarity=0.006  Sum_probs=65.2

Q ss_pred             eEEEcCCCCeE-EEEeccCce---EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEe---
Q 027522            4 RFLHDPSKDIG-FVGCALAST---MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN---   76 (222)
Q Consensus         4 r~afhP~g~~a-Yvv~ELsst---V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSn---   76 (222)
                      .++|+|+|+.+ |+..+-+..   |+++.. +.|+..  +....+ . .....     .....+.+||||++|+++.   
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~-~~g~~~--~l~~~~-~-~~~~~-----~~~~~~~~spdg~~l~~~~~~~  311 (388)
T 3pe7_A          242 HEFWVPDGSALVYVSYLKGSPDRFIYSADP-ETLENR--QLTSMP-A-CSHLM-----SNYDGSLMVGDGSDAPVDVQDD  311 (388)
T ss_dssp             EEEECTTSSCEEEEEEETTCCCEEEEEECT-TTCCEE--EEEEEC-C-EEEEE-----ECTTSSEEEEEECCC-------
T ss_pred             cceECCCCCEEEEEecCCCCCcceEEEEec-CCCceE--EEEcCC-C-ceeee-----ecCCCCeEccCCCcceeEeeec
Confidence            46899999855 776665543   555543 345432  222222 1 00000     0012347999999999764   


Q ss_pred             -----CCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEE
Q 027522           77 -----WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYV  151 (222)
Q Consensus        77 -----Rgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyv  151 (222)
                           .+...|.+|+++.   +++ .++.....     ...++              .+.+ ......+++||||++|+.
T Consensus       312 ~~~~~~~~~~i~~~d~~~---~~~-~~l~~~~~-----~~~~~--------------~~~~-~~~~~~~~~spDg~~l~~  367 (388)
T 3pe7_A          312 SGYKIENDPFLYVFNMKN---GTQ-HRVARHDT-----SWKVF--------------EGDR-QVTHPHPSFTPDDKQILF  367 (388)
T ss_dssp             -----CCCCEEEEEETTT---TEE-EEEEECCC-----CCCCB--------------TTBS-STTCCCCEECTTSSEEEE
T ss_pred             cccccCCCCEEEEEeccC---Cce-EEeccccC-----ccccc--------------cccc-ccCCCCccCCCCCCEEEE
Confidence                 4566788887632   333 22222100     00000              0000 001456799999999998


Q ss_pred             EeCCCCccccccccccccCCcEEEEEEee
Q 027522          152 TNSLFSAWDCQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       152 aNsl~~~wd~Q~yp~~~s~~~~i~~~dvd  180 (222)
                      +.        ..     .....++.++++
T Consensus       368 ~s--------~~-----~g~~~l~~~~l~  383 (388)
T 3pe7_A          368 TS--------DV-----HGKPALYLATLP  383 (388)
T ss_dssp             EE--------CT-----TSSCEEEEEECC
T ss_pred             Ee--------cC-----CCceeEEEEECC
Confidence            76        22     345678888664

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.95  E-value=0.0005  Score=58.83  Aligned_cols=104  Identities=5%  Similarity=0.044  Sum_probs=67.6

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++..... +.+|.++..+ .+.+.....+.       +.     ......|.+||||++|..+.+ .+.|.
T Consensus        66 ~~~~sp~g~~l~s~s~-D~~v~iw~~~-~~~~~~~~~~~-------~h-----~~~v~~v~~sp~~~~l~s~s~-D~~v~  130 (345)
T 3fm0_A           66 KVAWSPCGNYLASASF-DATTCIWKKN-QDDFECVTTLE-------GH-----ENEVKSVAWAPSGNLLATCSR-DKSVW  130 (345)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEEEC-CC-EEEEEEEC-------CC-----SSCEEEEEECTTSSEEEEEET-TSCEE
T ss_pred             EEEECCCCCEEEEEEC-CCcEEEEEcc-CCCeEEEEEcc-------CC-----CCCceEEEEeCCCCEEEEEEC-CCeEE
Confidence            3789999998877765 7888888764 33443332221       11     034689999999999987764 67999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++......+.+..+..  .                         ..    .-+.++++|+|++|+.+.
T Consensus       131 iwd~~~~~~~~~~~~~~~--h-------------------------~~----~v~~~~~~p~~~~l~s~s  169 (345)
T 3fm0_A          131 VWEVDEEDEYECVSVLNS--H-------------------------TQ----DVKHVVWHPSQELLASAS  169 (345)
T ss_dssp             EEEECTTSCEEEEEEECC--C-------------------------CS----CEEEEEECSSSSCEEEEE
T ss_pred             EEECCCCCCeEEEEEecC--c-------------------------CC----CeEEEEECCCCCEEEEEe
Confidence            999964332222211111  0                         11    156789999999888875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.95  E-value=0.00056  Score=56.39  Aligned_cols=99  Identities=7%  Similarity=0.005  Sum_probs=69.5

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++++.++ +.+|.+|.....+  .....+...    .        .....|.+|||+++|+++.. .+.|.
T Consensus       180 ~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~~~~~~~~~----~--------~~v~~~~~~~~~~~l~~~~~-d~~i~  243 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHK-DGKISKYDVSNNY--EYVDSIDLH----E--------KSISDMQFSPDLTYFITSSR-DTNSF  243 (369)
T ss_dssp             EEEECGGGCEEEEEET-TSEEEEEETTTTT--EEEEEEECC----S--------SCEEEEEECTTSSEEEEEET-TSEEE
T ss_pred             EEEEcCCCCEEEEEcC-CCEEEEEECCCCc--EeEEEEecC----C--------CceeEEEECCCCCEEEEecC-CceEE
Confidence            4679999999888776 6788888764322  223333221    1        34689999999999988764 67899


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++++..+..                            ...    ...++++|+|++|+++.
T Consensus       244 v~d~~~---~~~~~~~~~----------------------------~~~----~~~~~~~~~~~~l~~~~  278 (369)
T 3zwl_B          244 LVDVST---LQVLKKYET----------------------------DCP----LNTAVITPLKEFIILGG  278 (369)
T ss_dssp             EEETTT---CCEEEEEEC----------------------------SSC----EEEEEECSSSSEEEEEE
T ss_pred             EEECCC---CceeeeecC----------------------------CCC----ceeEEecCCCceEEEee
Confidence            999843   444433332                            112    67899999999999987

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.95  E-value=6.7e-05  Score=72.18  Aligned_cols=101  Identities=12%  Similarity=0.184  Sum_probs=70.7

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC-CcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH-GDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh-~sI~   83 (222)
                      +|+++.++.+|+.......|.++..+  |+..  +++  .....         ..+.+|++.|.+.+||+++|+. ..|.
T Consensus        89 lAvD~~~~~ly~~d~~~~~I~v~~~d--G~~~--~~l--~~~~l---------~~P~~Iavdp~~g~ly~tD~g~~~~I~  153 (619)
T 3s94_A           89 LACDWLGEKLYWTDSETNRIEVSNLD--GSLR--KVL--FWQEL---------DQPRAIALDPSSGFMYWTDWGEVPKIE  153 (619)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT--SCSC--EEE--ECSSC---------SCCCCEEEETTTTEEEEEECSSSCEEE
T ss_pred             EEEEecCCEEEEEeCCCCEEEEEECC--CCCE--EEE--EeCCC---------CCCceEEEecCCCeEEEeccCCCCEEE
Confidence            68899999999999999999999864  4432  121  11111         3468999999999999999984 5676


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                      +++.+. ...+.+  +..                           ...+    |.-+++++++++||+|++
T Consensus       154 r~~~dG-~~~~~l--~~~---------------------------~~~~----P~Glald~~~~~LY~aD~  190 (619)
T 3s94_A          154 RAGMDG-SSRFII--INS---------------------------EIYW----PNGLTLDYEEQKLYWADA  190 (619)
T ss_dssp             EEETTS-CSCEEE--ECS---------------------------SCSS----EEEEEEETTTTEEEEEET
T ss_pred             EEECCC-CceEEE--EeC---------------------------CCCC----CcEEEEEccCCEEEEEeC
Confidence            666532 112110  100                           1234    999999999999999983

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.94  E-value=0.00021  Score=61.75  Aligned_cols=104  Identities=7%  Similarity=0.064  Sum_probs=68.2

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEe--CCCCc
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN--WLHGD   81 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSn--Rgh~s   81 (222)
                      -++|+|+++++++.++ +.+|.+|... +++  ..+.+....   .+       .....+.+||||++|+++.  ...+.
T Consensus       181 ~~~~~~~~~~l~~~~~-d~~i~iwd~~-~~~--~~~~~~~~~---~~-------~~~~~~~~~~~~~~l~~g~~~~~d~~  246 (402)
T 2aq5_A          181 SVDWSRDGALICTSCR-DKRVRVIEPR-KGT--VVAEKDRPH---EG-------TRPVHAVFVSEGKILTTGFSRMSERQ  246 (402)
T ss_dssp             EEEECTTSSCEEEEET-TSEEEEEETT-TTE--EEEEEECSS---CS-------SSCCEEEECSTTEEEEEEECTTCCEE
T ss_pred             EEEECCCCCEEEEEec-CCcEEEEeCC-CCc--eeeeeccCC---CC-------CcceEEEEcCCCcEEEEeccCCCCce
Confidence            4689999999988875 7888888764 232  222221111   11       2357899999999998874  35789


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |.+|++.....+...  .....                          .    ++...++++|||++|+++.
T Consensus       247 i~iwd~~~~~~~~~~--~~~~~--------------------------~----~~v~~~~~s~~~~~l~~~g  286 (402)
T 2aq5_A          247 VALWDTKHLEEPLSL--QELDT--------------------------S----SGVLLPFFDPDTNIVYLCG  286 (402)
T ss_dssp             EEEEETTBCSSCSEE--EECCC--------------------------C----SSCEEEEEETTTTEEEEEE
T ss_pred             EEEEcCccccCCceE--EeccC--------------------------C----CceeEEEEcCCCCEEEEEE
Confidence            999999543322211  11100                          1    1377899999999999887

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.93  E-value=0.00055  Score=58.61  Aligned_cols=104  Identities=10%  Similarity=0.100  Sum_probs=67.7

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|+|+++....+ +.+|.+|..+ .+.+......  . ....        .....|.+||||++|..+.. .+.|.
T Consensus        21 ~l~~sp~g~~las~~~-D~~i~iw~~~-~~~~~~~~~~--~-~~h~--------~~v~~~~~sp~g~~l~s~s~-D~~v~   86 (345)
T 3fm0_A           21 FLAWNPAGTLLASCGG-DRRIRIWGTE-GDSWICKSVL--S-EGHQ--------RTVRKVAWSPCGNYLASASF-DATTC   86 (345)
T ss_dssp             EEEECTTSSCEEEEET-TSCEEEEEEE-TTEEEEEEEE--C-SSCS--------SCEEEEEECTTSSEEEEEET-TSCEE
T ss_pred             EEEECCCCCEEEEEcC-CCeEEEEEcC-CCcceeeeee--c-cccC--------CcEEEEEECCCCCEEEEEEC-CCcEE
Confidence            4789999998877765 7889988764 3443322221  1 1111        44689999999999977764 67899


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++.. ...+.+..+.                             |..  +..+.++++|||++|+.+.
T Consensus        87 iw~~~~-~~~~~~~~~~-----------------------------~h~--~~v~~v~~sp~~~~l~s~s  124 (345)
T 3fm0_A           87 IWKKNQ-DDFECVTTLE-----------------------------GHE--NEVKSVAWAPSGNLLATCS  124 (345)
T ss_dssp             EEEECC-C-EEEEEEEC-----------------------------CCS--SCEEEEEECTTSSEEEEEE
T ss_pred             EEEccC-CCeEEEEEcc-----------------------------CCC--CCceEEEEeCCCCEEEEEE
Confidence            999853 2222221111                             110  1257899999999988875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.93  E-value=0.00032  Score=57.94  Aligned_cols=76  Identities=12%  Similarity=0.075  Sum_probs=48.9

Q ss_pred             eEEEcC---CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            4 RFLHDP---SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         4 r~afhP---~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      .++|+|   +++++++.++ +++|.+|................     .+.     ......+.+|||++.+.++.-..+
T Consensus       214 ~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~-----~~~-----~~~v~~~~~~~~~~~~l~~~~~dg  282 (357)
T 3i2n_A          214 SLEFDRKDISMNKLVATSL-EGKFHVFDMRTQHPTKGFASVSE-----KAH-----KSTVWQVRHLPQNRELFLTAGGAG  282 (357)
T ss_dssp             EEEESCSSSSCCEEEEEES-TTEEEEEEEEEEETTTEEEEEEE-----ECC-----SSCEEEEEEETTEEEEEEEEETTS
T ss_pred             EEEcCCCCCCCCEEEEECC-CCeEEEEeCcCCCcccceeeecc-----CCC-----cCCEEEEEECCCCCcEEEEEeCCC
Confidence            468999   8888888765 77888886531111111111111     111     145789999999996666666788


Q ss_pred             cEEEEEecCC
Q 027522           81 DIRQYNIEDP   90 (222)
Q Consensus        81 sI~vf~i~d~   90 (222)
                      .|.+|++...
T Consensus       283 ~i~iwd~~~~  292 (357)
T 3i2n_A          283 GLHLWKYEYP  292 (357)
T ss_dssp             EEEEEEEECC
T ss_pred             cEEEeecCCC
Confidence            9999999653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.93  E-value=0.00018  Score=71.55  Aligned_cols=137  Identities=11%  Similarity=0.095  Sum_probs=88.3

Q ss_pred             EEEcCCCCeEEEEeccC-ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALA-STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELs-stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      +|++|.+.++|+...-. ..|.++..+  |+..  +++  ....+         ..+..|.|+++++.||++.++.+.|.
T Consensus       519 IaVDp~~g~LYwtD~g~~~~I~~~~~d--G~~~--~~l--v~~~l---------~~P~GLavD~~~~~LYwaD~~~~~I~  583 (791)
T 3m0c_C          519 IVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDI--YSL--VTENI---------QWPNGITLDLLSGRLYWVDSKLHSIS  583 (791)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETT--SCCE--EEE--ECSSC---------SCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEecCCCCEEEecCCCCCeEEEEecC--CCce--EEE--EeCCC---------CCceEEEEecCCCeEEEEeCCCCcEE
Confidence            68899999999988544 678888764  4322  111  11111         45799999999999999999999999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccc
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQF  163 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~  163 (222)
                      +++++. ...+.+  +..+                           +..    |+-+.|+.++.+||+|+          
T Consensus       584 ~~d~dG-~~~~~v--~~~~---------------------------~~l----~~P~glav~~~~lYwtD----------  619 (791)
T 3m0c_C          584 SIDVNG-GNRKTI--LEDE---------------------------KRL----AHPFSLAVFEDKVFWTD----------  619 (791)
T ss_dssp             EEETTS-CSCEEE--EECT---------------------------TTT----SSEEEEEEETTEEEEEE----------
T ss_pred             EEecCC-CceEEE--ecCC---------------------------Ccc----CCCCEEEEeCCEEEEEE----------
Confidence            998843 222221  1110                           122    44556666888999999          


Q ss_pred             ccccccCCcEEEEEEeeCCCCCe--eeccceeEecCCCCCCCcceeeeecC
Q 027522          164 YPELKEKGSHMLQIDVNSEKGGM--AINPNFFVDFEAEPDGPALAHEMRYP  212 (222)
Q Consensus       164 yp~~~s~~~~i~~~dvd~~~G~l--~~~~~f~vdf~~~~~g~~~~h~~r~~  212 (222)
                           ..+..|.++|.  .+|.-  .+..     -...|.|=.+.|..|-|
T Consensus       620 -----~~~~~I~~~dk--~tG~~~~~l~~-----~l~~P~~i~v~h~~~Qp  658 (791)
T 3m0c_C          620 -----IINEAIFSANR--LTGSDVNLLAE-----NLLSPEDMVLFHNLTQP  658 (791)
T ss_dssp             -----TTTTEEEEEET--TTCCCCEEEEC-----SCSCCCCEEEESGGGSC
T ss_pred             -----CCCCEEEEEeC--CCCcceEEeec-----CCCCceeEeeeccccCC
Confidence                 46788888854  56643  2221     12345564466766666

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.92  E-value=0.00037  Score=59.24  Aligned_cols=111  Identities=11%  Similarity=0.009  Sum_probs=71.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCC--CCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC----
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQD--GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL----   78 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~--g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg----   78 (222)
                      ++++|+|+++||.+-....|.+|..+..  +..+.  ... .+            . +..|.+++||+ |||+++.    
T Consensus       190 ia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~--~~~-~~------------g-P~gi~~d~~G~-l~va~~~~~~~  252 (322)
T 2fp8_A          190 AEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV--LVK-IP------------N-PGNIKRNADGH-FWVSSSEELDG  252 (322)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE--EEE-CS------------S-EEEEEECTTSC-EEEEEEEETTS
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce--EEe-CC------------C-CCCeEECCCCC-EEEEecCcccc
Confidence            6899999999999888899999987521  22221  111 11            3 57899999997 9999987    


Q ss_pred             ------CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE
Q 027522           79 ------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT  152 (222)
Q Consensus        79 ------h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva  152 (222)
                            ++.|.+|   ++ .++++..+...                          .|.. ...|..++.  ++.+|||+
T Consensus       253 ~~~~~~~~~v~~~---d~-~G~~~~~~~~~--------------------------~g~~-~~~~~~~~~--~~g~L~v~  299 (322)
T 2fp8_A          253 NMHGRVDPKGIKF---DE-FGNILEVIPLP--------------------------PPFA-GEHFEQIQE--HDGLLYIG  299 (322)
T ss_dssp             STTSCEEEEEEEE---CT-TSCEEEEEECC--------------------------TTTT-TSCCCEEEE--ETTEEEEE
T ss_pred             cccCCCccEEEEE---CC-CCCEEEEEECC--------------------------CCCc-cccceEEEE--eCCEEEEe
Confidence                  3445555   33 36665555431                          0111 113666666  46689999


Q ss_pred             eCCCCccccccccccccCCcEEEEEEee
Q 027522          153 NSLFSAWDCQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       153 Nsl~~~wd~Q~yp~~~s~~~~i~~~dvd  180 (222)
                      +               ..+..|.+++.+
T Consensus       300 ~---------------~~~~~i~~~~~~  312 (322)
T 2fp8_A          300 T---------------LFHGSVGILVYD  312 (322)
T ss_dssp             C---------------SSCSEEEEEEC-
T ss_pred             e---------------cCCCceEEEecc
Confidence            8               346677777653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.92  E-value=0.00059  Score=59.21  Aligned_cols=102  Identities=12%  Similarity=0.128  Sum_probs=70.2

Q ss_pred             eEEEcCCCCeEEEEec--cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEe-CCCC
Q 027522            4 RFLHDPSKDIGFVGCA--LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN-WLHG   80 (222)
Q Consensus         4 r~afhP~g~~aYvv~E--LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSn-Rgh~   80 (222)
                      .++|+|+++..++.+-  .+.+|.+|... +++  ..+.+..     .        .....+.+|||+++|+++. ...+
T Consensus       264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~-~~~--~~~~~~~-----~--------~~v~~~~~s~~~~~l~~~~g~~dg  327 (401)
T 4aez_A          264 AVAWCPWQSNLLATGGGTMDKQIHFWNAA-TGA--RVNTVDA-----G--------SQVTSLIWSPHSKEIMSTHGFPDN  327 (401)
T ss_dssp             EEEECTTSTTEEEEECCTTTCEEEEEETT-TCC--EEEEEEC-----S--------SCEEEEEECSSSSEEEEEECTTTC
T ss_pred             EEEECCCCCCEEEEecCCCCCEEEEEECC-CCC--EEEEEeC-----C--------CcEEEEEECCCCCeEEEEeecCCC
Confidence            4789999988888765  78889998764 332  2233321     1        3468999999999999875 3578


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .|.+|++..   +++.......+.                         .    +....++++|||++|+++.
T Consensus       328 ~i~v~~~~~---~~~~~~~~~~~h-------------------------~----~~v~~~~~s~dg~~l~s~~  368 (401)
T 4aez_A          328 NLSIWSYSS---SGLTKQVDIPAH-------------------------D----TRVLYSALSPDGRILSTAA  368 (401)
T ss_dssp             EEEEEEEET---TEEEEEEEEECC-------------------------S----SCCCEEEECTTSSEEEEEC
T ss_pred             cEEEEecCC---ccceeEEEecCC-------------------------C----CCEEEEEECCCCCEEEEEe
Confidence            999999954   333222222110                         1    1267899999999998887

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.91  E-value=0.00048  Score=62.12  Aligned_cols=104  Identities=9%  Similarity=0.082  Sum_probs=70.6

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCe-eEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSW-NHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~-~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      =++|++....+|+..-....|.++..+..... ....++.   ...         ..+..|++.+.++.||++..+.+.|
T Consensus       116 ~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~---~~~---------~~p~glavD~~~~~lY~~d~~~~~I  183 (400)
T 3p5b_L          116 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDI---------QAPDGLAVDWIHSNIYWTDSVLGTV  183 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC---SSC---------SCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe---CCC---------CCcccEEEEecCCceEEEECCCCeE
Confidence            36899999999999998899999876421111 1112221   111         3468999999999999999999999


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .+++.+.  .. ....+..                           ....    ||.++++|.+.+||+|+
T Consensus       184 ~~~~~~g--~~-~~~l~~~---------------------------~~~~----P~~iavdp~~g~ly~td  220 (400)
T 3p5b_L          184 SVADTKG--VK-RKTLFRE---------------------------NGSK----PRAIVVDPVHGFMYWTD  220 (400)
T ss_dssp             EEECTTT--CS-EEEEEEC---------------------------SSCC----EEEEEEETTTTEEEEEE
T ss_pred             EEEeCCC--Cc-eEEEEeC---------------------------CCCC----cceEEEecccCeEEEEe
Confidence            8886632  11 1111111                           1234    99999999999999998

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.90  E-value=0.00056  Score=63.08  Aligned_cols=71  Identities=10%  Similarity=0.002  Sum_probs=45.9

Q ss_pred             EEEcCCCCeEEEEeccC-------ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC
Q 027522            5 FLHDPSKDIGFVGCALA-------STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW   77 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELs-------stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR   77 (222)
                      ++|+|||++++....-.       ++|+++..+.+|++...+.+....   .        .....+..||||+++|++++
T Consensus       193 ~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~---~--------~~~~~~~~spdg~l~~~~~~  261 (662)
T 3azo_A          193 PRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP---E--------EAIAQAEWAPDGSLIVATDR  261 (662)
T ss_dssp             CEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET---T--------BCEEEEEECTTSCEEEEECT
T ss_pred             ceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC---C--------ceEcceEECCCCeEEEEECC
Confidence            57999999887776543       578888875456543333332210   1        23478899999997767766


Q ss_pred             CCCcEEEEEe
Q 027522           78 LHGDIRQYNI   87 (222)
Q Consensus        78 gh~sI~vf~i   87 (222)
                       .+.+.+|.+
T Consensus       262 -~~~~~l~~~  270 (662)
T 3azo_A          262 -TGWWNLHRV  270 (662)
T ss_dssp             -TSSCEEEEE
T ss_pred             -CCCeEEEEE
Confidence             455556666

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.89  E-value=0.0008  Score=56.95  Aligned_cols=105  Identities=10%  Similarity=0.170  Sum_probs=67.0

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+|+++....+ +.+|.+|... .+  +....+...             .....+.+|||+++|.++.  .+.|.
T Consensus       201 ~~~~sp~g~~l~s~~~-dg~i~iwd~~-~~--~~~~~~~~~-------------~~v~~~~~sp~~~~la~~~--~~~i~  261 (319)
T 3frx_A          201 TLTASPDGTLIASAGK-DGEIMLWNLA-AK--KAMYTLSAQ-------------DEVFSLAFSPNRYWLAAAT--ATGIK  261 (319)
T ss_dssp             EEEECTTSSEEEEEET-TCEEEEEETT-TT--EEEEEEECC-------------SCEEEEEECSSSSEEEEEE--TTEEE
T ss_pred             EEEEcCCCCEEEEEeC-CCeEEEEECC-CC--cEEEEecCC-------------CcEEEEEEcCCCCEEEEEc--CCCcE
Confidence            4789999998887776 7889888764 22  222222211             3357899999999998886  46699


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|+++.   ..++..+...  +                 ...    .+...+....+++||||++|+++.
T Consensus       262 v~~~~~---~~~~~~~~~~--~-----------------~~~----~~~~~~~v~~~~~spdg~~l~sg~  305 (319)
T 3frx_A          262 VFSLDP---QYLVDDLRPE--F-----------------AGY----SKAAEPHAVSLAWSADGQTLFAGY  305 (319)
T ss_dssp             EEEETT---EEEEEEECCC--C-----------------TTC----CGGGCCCEEEEEECTTSSEEEEEE
T ss_pred             EEEeCc---CeeeeccCcc--c-----------------ccc----ccCcCcceeEEEECCCCCEEEEee
Confidence            999943   3343322210  0                 000    000111256799999999999887

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.88  E-value=0.00075  Score=57.57  Aligned_cols=99  Identities=16%  Similarity=0.186  Sum_probs=66.9

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++.+... +.+|.+|... .++.  ...+...     +       .....+.+||||++|.++.. .+.|.
T Consensus       127 ~~~~spdg~~l~~g~~-dg~v~i~~~~-~~~~--~~~~~~~-----~-------~~v~~~~~spdg~~lasg~~-dg~i~  189 (321)
T 3ow8_A          127 TLAFSPDSQYLATGTH-VGKVNIFGVE-SGKK--EYSLDTR-----G-------KFILSIAYSPDGKYLASGAI-DGIIN  189 (321)
T ss_dssp             CEEECTTSSEEEEECT-TSEEEEEETT-TCSE--EEEEECS-----S-------SCEEEEEECTTSSEEEEEET-TSCEE
T ss_pred             EEEECCCCCEEEEEcC-CCcEEEEEcC-CCce--eEEecCC-----C-------ceEEEEEECCCCCEEEEEcC-CCeEE
Confidence            3789999998877665 6788888764 3322  1222111     1       34688999999999987764 67999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++++..+..  .                         ..    ..+.++++|||++|+.+.
T Consensus       190 iwd~~~---~~~~~~~~~--h-------------------------~~----~v~~l~~spd~~~l~s~s  225 (321)
T 3ow8_A          190 IFDIAT---GKLLHTLEG--H-------------------------AM----PIRSLTFSPDSQLLVTAS  225 (321)
T ss_dssp             EEETTT---TEEEEEECC--C-------------------------SS----CCCEEEECTTSCEEEEEC
T ss_pred             EEECCC---CcEEEEEcc--c-------------------------CC----ceeEEEEcCCCCEEEEEc
Confidence            999843   555433221  0                         11    157899999999998876

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.86  E-value=0.001  Score=55.30  Aligned_cols=72  Identities=11%  Similarity=0.062  Sum_probs=51.0

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++++.++ +++|.+|..+....+...+.+..   ...        .....|.++||+++|+++.. .+.|.
T Consensus       101 ~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~---~~~--------~~i~~~~~~~~~~~l~~~~~-dg~i~  167 (372)
T 1k8k_C          101 CVRWAPNEKKFAVGSG-SRVISICYFEQENDWWVCKHIKK---PIR--------STVLSLDWHPNSVLLAAGSC-DFKCR  167 (372)
T ss_dssp             EEEECTTSSEEEEEET-TSSEEEEEEETTTTEEEEEEECT---TCC--------SCEEEEEECTTSSEEEEEET-TSCEE
T ss_pred             EEEECCCCCEEEEEeC-CCEEEEEEecCCCcceeeeeeec---ccC--------CCeeEEEEcCCCCEEEEEcC-CCCEE
Confidence            4789999999888876 67888887753333433332211   111        45689999999999988774 67899


Q ss_pred             EEEec
Q 027522           84 QYNIE   88 (222)
Q Consensus        84 vf~i~   88 (222)
                      +|++.
T Consensus       168 ~~d~~  172 (372)
T 1k8k_C          168 IFSAY  172 (372)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            99974

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.86  E-value=0.0014  Score=55.03  Aligned_cols=111  Identities=14%  Similarity=0.121  Sum_probs=67.3

Q ss_pred             eEEEcCCCC-eEEEEeccCceEEEEEe----CCCCC--eeEEEEEEecCcccccc-cCCCCCCceeEEEEcCCCCEEEEE
Q 027522            4 RFLHDPSKD-IGFVGCALASTMVRFSK----TQDGS--WNHEVAISVKSLKVQNW-ILPEMPGLITDFLISLDDRFLYFS   75 (222)
Q Consensus         4 r~afhP~g~-~aYvv~ELsstV~~~~~----d~~g~--~~~~q~is~~p~~~~g~-~~~~~~~~~adI~iSpDgrfLYvS   75 (222)
                      .++|+|+++ ++++.+. +.+|.+|..    . +++  |.......+.. .+.+. ...........|.+||||++|+++
T Consensus        50 ~~~~s~~~~~~l~~~~~-dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  126 (425)
T 1r5m_A           50 SSTWNPLDESILAYGEK-NSVARLARIVETDQ-EGKKYWKLTIIAELRH-PFALSASSGKTTNQVTCLAWSHDGNSIVTG  126 (425)
T ss_dssp             EEEECSSCTTEEEEEET-BTEEEEEEEEEC-------CEEEEEEEEEEC-CCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCcEEEEecC-CceEEEEEEecccC-Cccccccccccccccc-cccccccccCCCCceEEEEEcCCCCEEEEE
Confidence            478999999 7777664 788888877    4 333  33333322221 11110 000011357899999999999888


Q ss_pred             eCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           76 NWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        76 nRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .. .+.|.+|+.    +++.+..+...                           ..    ....++++|+|++|+++.
T Consensus       127 ~~-dg~i~i~~~----~~~~~~~~~~~---------------------------~~----~v~~~~~~~~~~~l~~~~  168 (425)
T 1r5m_A          127 VE-NGELRLWNK----TGALLNVLNFH---------------------------RA----PIVSVKWNKDGTHIISMD  168 (425)
T ss_dssp             ET-TSCEEEEET----TSCEEEEECCC---------------------------CS----CEEEEEECTTSSEEEEEE
T ss_pred             eC-CCeEEEEeC----CCCeeeeccCC---------------------------Cc----cEEEEEECCCCCEEEEEe
Confidence            75 578999983    23343322210                           11    267899999999999886

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.86  E-value=0.00028  Score=62.59  Aligned_cols=67  Identities=3%  Similarity=-0.072  Sum_probs=45.7

Q ss_pred             eEEEcCC---CCeEEEEecc-------CceEEEEEeCC-CCCeeEEEEE-EecCcccccccCCCCCCceeEEEEcCCCCE
Q 027522            4 RFLHDPS---KDIGFVGCAL-------ASTMVRFSKTQ-DGSWNHEVAI-SVKSLKVQNWILPEMPGLITDFLISLDDRF   71 (222)
Q Consensus         4 r~afhP~---g~~aYvv~EL-------sstV~~~~~d~-~g~~~~~q~i-s~~p~~~~g~~~~~~~~~~adI~iSpDgrf   71 (222)
                      -++|||+   ..++||...-       .+.|.++..+. ++++...+++ +..|....+.      ..+..|.++||| +
T Consensus        70 gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~------h~~~~l~~~pdG-~  142 (353)
T 2g8s_A           70 DVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGN------HFGGRLVFDGKG-Y  142 (353)
T ss_dssp             EEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSS------CCCCCEEECSSS-E
T ss_pred             eEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCc------ccCccEEECCCC-c
Confidence            5799998   8999999764       46799998863 3566655554 3333211111      234789999999 8


Q ss_pred             EEEEeC
Q 027522           72 LYFSNW   77 (222)
Q Consensus        72 LYvSnR   77 (222)
                      ||++.-
T Consensus       143 Lyv~~G  148 (353)
T 2g8s_A          143 LFIALG  148 (353)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999973

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.83  E-value=0.0028  Score=51.14  Aligned_cols=72  Identities=7%  Similarity=0.080  Sum_probs=51.6

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcC--CCCEEEEEeCCCC
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISL--DDRFLYFSNWLHG   80 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp--DgrfLYvSnRgh~   80 (222)
                      .++|+|+++++.+.++ +.+|.+|..+. ...+.....+.-.    .        .....|.++|  |+++|+++.. .+
T Consensus        16 ~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~----~--------~~v~~~~~~~~~d~~~l~s~~~-dg   81 (351)
T 3f3f_A           16 DVVYDFYGRHVATCSS-DQHIKVFKLDKDTSNWELSDSWRAH----D--------SSIVAIDWASPEYGRIIASASY-DK   81 (351)
T ss_dssp             EEEECSSSSEEEEEET-TSEEEEEEECSSSCCEEEEEEEECC----S--------SCEEEEEECCGGGCSEEEEEET-TS
T ss_pred             EEEEcCCCCEEEEeeC-CCeEEEEECCCCCCcceecceeccC----C--------CcEEEEEEcCCCCCCEEEEEcC-CC
Confidence            4789999999888775 78899998752 3333333332211    1        4468999999  7999987775 67


Q ss_pred             cEEEEEecC
Q 027522           81 DIRQYNIED   89 (222)
Q Consensus        81 sI~vf~i~d   89 (222)
                      .|.+|++..
T Consensus        82 ~v~vwd~~~   90 (351)
T 3f3f_A           82 TVKLWEEDP   90 (351)
T ss_dssp             CEEEEEECT
T ss_pred             eEEEEecCC
Confidence            899999954

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.83  E-value=0.00051  Score=64.20  Aligned_cols=99  Identities=7%  Similarity=-0.045  Sum_probs=70.3

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|||+++++.+..+ +++|.+|... +|+  ..+.+....            .....+.+||||++|.++.. .+.|.
T Consensus        18 ~i~~sp~~~~la~~~~-~g~v~iwd~~-~~~--~~~~~~~~~------------~~v~~~~~s~~~~~l~~~~~-dg~i~   80 (814)
T 3mkq_A           18 GIDFHPTEPWVLTTLY-SGRVEIWNYE-TQV--EVRSIQVTE------------TPVRAGKFIARKNWIIVGSD-DFRIR   80 (814)
T ss_dssp             EEEECSSSSEEEEEET-TSEEEEEETT-TTE--EEEEEECCS------------SCEEEEEEEGGGTEEEEEET-TSEEE
T ss_pred             EEEECCCCCEEEEEeC-CCEEEEEECC-CCc--eEEEEecCC------------CcEEEEEEeCCCCEEEEEeC-CCeEE
Confidence            4789999999999886 7789998764 342  233333211            34689999999999988875 78999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++.+......                           ..    ..+.++++|||++|+++.
T Consensus        81 vw~~~~---~~~~~~~~~~---------------------------~~----~v~~~~~s~~~~~l~~~~  116 (814)
T 3mkq_A           81 VFNYNT---GEKVVDFEAH---------------------------PD----YIRSIAVHPTKPYVLSGS  116 (814)
T ss_dssp             EEETTT---CCEEEEEECC---------------------------SS----CEEEEEECSSSSEEEEEE
T ss_pred             EEECCC---CcEEEEEecC---------------------------CC----CEEEEEEeCCCCEEEEEc
Confidence            999843   4443333210                           11    268899999999998876

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.82  E-value=0.00041  Score=60.42  Aligned_cols=99  Identities=10%  Similarity=0.113  Sum_probs=63.9

Q ss_pred             EEEcCCCCeEEEEec-cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCA-LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~E-LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .+|+|||+++.+..- .+++|.+|... +++  .+..+..     .        ....+|.+||||++|..+.  .+.+.
T Consensus       139 v~fSpDg~~la~as~~~d~~i~iwd~~-~~~--~~~~~~~-----~--------~~V~~v~fspdg~~l~s~s--~~~~~  200 (365)
T 4h5i_A          139 VYISREGTVAAIASSKVPAIMRIIDPS-DLT--EKFEIET-----R--------GEVKDLHFSTDGKVVAYIT--GSSLE  200 (365)
T ss_dssp             EEECTTSSCEEEEESCSSCEEEEEETT-TTE--EEEEEEC-----S--------SCCCEEEECTTSSEEEEEC--SSCEE
T ss_pred             EEEcCCCCEEEEEECCCCCEEEEeECC-CCc--EEEEeCC-----C--------CceEEEEEccCCceEEecc--ceeEE
Confidence            579999999887654 57888888763 332  2222211     1        2357899999999998775  56788


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|....   ++.+......+                         .+..    .+.++++|||++|+++.
T Consensus       201 ~~~~~~---~~~~~~~~~~~-------------------------~~~~----v~~v~fspdg~~l~~~s  238 (365)
T 4h5i_A          201 VISTVT---GSCIARKTDFD-------------------------KNWS----LSKINFIADDTVLIAAS  238 (365)
T ss_dssp             EEETTT---CCEEEEECCCC-------------------------TTEE----EEEEEEEETTEEEEEEE
T ss_pred             EEEecc---CcceeeeecCC-------------------------CCCC----EEEEEEcCCCCEEEEEe
Confidence            887643   22211111100                         1122    57899999999999886

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.80  E-value=0.00014  Score=64.17  Aligned_cols=104  Identities=6%  Similarity=0.042  Sum_probs=68.9

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|++...++.+--+.+|.+|.............+...    .        ..+..|.+||+++++++++-..+.|.+
T Consensus       237 v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~----~--------~~v~~i~~~p~~~~~l~tg~~dg~v~v  304 (430)
T 2xyi_A          237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH----T--------AEVNCLSFNPYSEFILATGSADKTVAL  304 (430)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC----S--------SCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             eEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC----C--------CCeEEEEeCCCCCCEEEEEeCCCeEEE
Confidence            6789976666666666889999977532212222222211    1        346899999999999988888999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++.....+..  .+...                           .    +....++++|+|++|++++
T Consensus       305 wd~~~~~~~~~--~~~~h---------------------------~----~~v~~i~~sp~~~~~l~s~  340 (430)
T 2xyi_A          305 WDLRNLKLKLH--SFESH---------------------------K----DEIFQVQWSPHNETILASS  340 (430)
T ss_dssp             EETTCTTSCSE--EEECC---------------------------S----SCEEEEEECSSCTTEEEEE
T ss_pred             EeCCCCCCCeE--EeecC---------------------------C----CCEEEEEECCCCCCEEEEE
Confidence            99954332211  11110                           1    1267899999999888887

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.80  E-value=2.2e-05  Score=76.34  Aligned_cols=104  Identities=10%  Similarity=0.083  Sum_probs=69.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|++.+..+|+.......|.++..+..  ........+....+         ..+..|++++.++.||+++.+.+.|.+
T Consensus       411 la~d~~~~~Ly~sD~~~~~I~~~~~~g~--~~~~~~~~~i~~~~---------~~P~glavD~~~g~LY~tD~~~~~I~v  479 (699)
T 1n7d_A          411 LDTEVASNRIYWSDLSQRMICSTQLDRA--HGVSSYDTVISRDI---------QAPDGLAVDWIHSNIYWTDSVLGTVSV  479 (699)
T ss_dssp             CEEETTTTEEEECCTTTTSBEEEESCCC--CC-CCCCCBCCSCC-----------CCCEECCCSSSBCEECCTTTSCEEE
T ss_pred             EccccccCeEEEEecCCCeEEEEecCCC--CCCcceEEEEeCCC---------CCcceEEEEeeCCcEEEEeccCCeEEE
Confidence            5789999999999999999999976421  00000111111111         235789999999999999999999988


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ++.+.   ... ..+..                          .+...    |+.++++|++++||+|+
T Consensus       480 ~d~dg---~~~-~~l~~--------------------------~~~~~----P~giavDp~~g~ly~td  514 (699)
T 1n7d_A          480 ADTKG---VKR-KTLFR--------------------------EQGSK----PRAIVVDPVHGFMYWTD  514 (699)
T ss_dssp             EBSSS---CCE-EEECC--------------------------CSSCC----CCCEECCSSSSCCEECC
T ss_pred             EecCC---Cce-EEEEe--------------------------CCCCC----cceEEEccCCCcEEEcc
Confidence            87632   111 11111                          01233    99999999999999998

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.78  E-value=0.0007  Score=62.71  Aligned_cols=112  Identities=18%  Similarity=0.278  Sum_probs=66.6

Q ss_pred             eEEEcCCCCeEEEEeccCc-eEEEEEeCCCCCeeEEEEEEecCccc---ccccCCCCCCceeEEEEcCC---CCEEEEEe
Q 027522            4 RFLHDPSKDIGFVGCALAS-TMVRFSKTQDGSWNHEVAISVKSLKV---QNWILPEMPGLITDFLISLD---DRFLYFSN   76 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELss-tV~~~~~d~~g~~~~~q~is~~p~~~---~g~~~~~~~~~~adI~iSpD---grfLYvSn   76 (222)
                      =++|.|+|+ +|| +|... .|.++.. .+|+.+  .+..++ ..+   .+.      ...-+|+++||   +++|||+.
T Consensus        31 ~~a~~pdG~-l~V-~e~~gg~I~~~~~-~~g~~~--~~~~~~-~~~~~~~g~------~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           31 ALLWGPDNQ-IWL-TERATGKILRVNP-ESGSVK--TVFQVP-EIVNDADGQ------NGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             EEEECTTSC-EEE-EETTTCEEEEECT-TTCCEE--EEEECT-TCCCCTTSS------CSEEEEEECTTTTTSCEEEEEE
T ss_pred             EEEEcCCCc-EEE-EEcCCCEEEEEEC-CCCcEe--EEecCC-ccccccCCC------CceeEEEECCCcCcCCEEEEEE
Confidence            378999997 555 46664 6888854 245543  222333 211   112      34579999999   99999998


Q ss_pred             CC------------CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECC
Q 027522           77 WL------------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSL  144 (222)
Q Consensus        77 Rg------------h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lsp  144 (222)
                      ..            ...|..|+.++ ...++.....+            +.     ..|.    .+.|   .+..|+++|
T Consensus        99 s~~~~~~~~~~~~~~~~v~r~~~~~-~~~~~~~~~~i------------~~-----~~p~----~~~H---~~~~l~f~p  153 (454)
T 1cru_A           99 TFKNPKSTDKELPNQTIIRRYTYNK-STDTLEKPVDL------------LA-----GLPS----SKDH---QSGRLVIGP  153 (454)
T ss_dssp             EEECTTC--CCSCEEEEEEEEEEET-TTTEEEEEEEE------------EE-----EECC----CSSC---CEEEEEECT
T ss_pred             eccccCCCccccccccEEEEEEECC-CCCCcCCcEEE------------EE-----cCCC----CCCC---CCCeEeECC
Confidence            53            34688887753 34455221111            00     0111    1222   488999999


Q ss_pred             CCCEEEEEe
Q 027522          145 DGKRLYVTN  153 (222)
Q Consensus       145 dGk~LyvaN  153 (222)
                      ||+ |||+.
T Consensus       154 DG~-Lyv~~  161 (454)
T 1cru_A          154 DQK-IYYTI  161 (454)
T ss_dssp             TSC-EEEEE
T ss_pred             CCe-EEEEE
Confidence            996 99985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.78  E-value=0.00084  Score=57.26  Aligned_cols=99  Identities=15%  Similarity=0.180  Sum_probs=66.0

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++.+.++ +.+|.+|... +++  ..+.+.       +..     .....|.+|||+++|..+. ..+.|.
T Consensus       169 ~~~~spdg~~lasg~~-dg~i~iwd~~-~~~--~~~~~~-------~h~-----~~v~~l~~spd~~~l~s~s-~dg~i~  231 (321)
T 3ow8_A          169 SIAYSPDGKYLASGAI-DGIINIFDIA-TGK--LLHTLE-------GHA-----MPIRSLTFSPDSQLLVTAS-DDGYIK  231 (321)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEETT-TTE--EEEEEC-------CCS-----SCCCEEEECTTSCEEEEEC-TTSCEE
T ss_pred             EEEECCCCCEEEEEcC-CCeEEEEECC-CCc--EEEEEc-------ccC-----CceeEEEEcCCCCEEEEEc-CCCeEE
Confidence            4789999999887765 7788888763 342  222221       110     3357899999999997665 467899


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++++..+..                             ..  +....++++|||++|+.+.
T Consensus       232 iwd~~~---~~~~~~~~~-----------------------------h~--~~v~~~~~sp~~~~l~s~s  267 (321)
T 3ow8_A          232 IYDVQH---ANLAGTLSG-----------------------------HA--SWVLNVAFCPDDTHFVSSS  267 (321)
T ss_dssp             EEETTT---CCEEEEECC-----------------------------CS--SCEEEEEECTTSSEEEEEE
T ss_pred             EEECCC---cceeEEEcC-----------------------------CC--CceEEEEECCCCCEEEEEe
Confidence            999853   334322211                             10  1257899999999988876

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.77  E-value=0.0004  Score=58.52  Aligned_cols=36  Identities=14%  Similarity=0.121  Sum_probs=24.6

Q ss_pred             CeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCee
Q 027522          137 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA  187 (222)
Q Consensus       137 Pr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~  187 (222)
                      ...+++||||++|+.+.        ..     .....++.+|+  .+|..+
T Consensus       353 ~~~~~~s~dg~~l~~~s--------~~-----~~~~~l~~~~~--~~~~~~  388 (396)
T 3c5m_A          353 HPHPSFTPNDDGVLFTS--------DF-----EGVPAIYIADV--PESYKH  388 (396)
T ss_dssp             CCCCEECTTSSEEEEEE--------CT-----TSSCEEEEEEC--CTTCC-
T ss_pred             CCCceEccCCCeEEEEe--------cC-----CCCceEEEEEE--cccccc
Confidence            45678999999999887        32     23556787765  556554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.75  E-value=0.00068  Score=57.53  Aligned_cols=70  Identities=1%  Similarity=-0.001  Sum_probs=48.9

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|||+++++.+.++ +++|.+|... +++... .  .+. ....        .....|.+||||++|.++.  .+.|.
T Consensus       175 ~~~~~pdg~~lasg~~-dg~i~iwd~~-~~~~~~-~--~~~-~~h~--------~~v~~l~fs~~g~~l~s~~--~~~v~  238 (343)
T 3lrv_A          175 SGVLHKDSLLLALYSP-DGILDVYNLS-SPDQAS-S--RFP-VDEE--------AKIKEVKFADNGYWMVVEC--DQTVV  238 (343)
T ss_dssp             EEEECTTSCEEEEECT-TSCEEEEESS-CTTSCC-E--ECC-CCTT--------SCEEEEEECTTSSEEEEEE--SSBEE
T ss_pred             EEEECCCCCEEEEEcC-CCEEEEEECC-CCCCCc-c--EEe-ccCC--------CCEEEEEEeCCCCEEEEEe--CCeEE
Confidence            4689999998887765 7889988764 332210 1  111 1011        4578999999999999988  45999


Q ss_pred             EEEecC
Q 027522           84 QYNIED   89 (222)
Q Consensus        84 vf~i~d   89 (222)
                      +|++..
T Consensus       239 iwd~~~  244 (343)
T 3lrv_A          239 CFDLRK  244 (343)
T ss_dssp             EEETTS
T ss_pred             EEEcCC
Confidence            999954

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.75  E-value=0.00053  Score=66.09  Aligned_cols=100  Identities=10%  Similarity=0.155  Sum_probs=71.0

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC--cE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG--DI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~--sI   82 (222)
                      +|+++.++.+|+.+....+|.++..+  |+..  .++-.  ..   -      ..+.+|++.|...+||++.|+..  .|
T Consensus       394 lAvD~~~~nLY~td~~~~~I~v~~~~--G~~~--~~l~~--~~---l------~~Pr~iavdp~~g~ly~tD~g~~~~~I  458 (628)
T 4a0p_A          394 LSIDIYSRYIYWTCEATNVINVTRLD--GRSV--GVVLK--GE---Q------DRPRAVVVNPEKGYMYFTNLQERSPKI  458 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT--SCEE--EEEEE--CT---T------CCEEEEEEETTTTEEEEEEEETTEEEE
T ss_pred             EEeeccCCeEEEEcCCCCEEEEEECC--CCeE--EEEEe--CC---C------CceeeEEEecCCCeEEEeecCCCCCeE
Confidence            67888899999999999999999864  5532  22211  11   1      45799999999999999999876  57


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .+++.+. ...+.   +-..                          .-.+    |+-+++++++++||+|+
T Consensus       459 ~r~~~dG-~~~~~---l~~~--------------------------~l~~----P~gla~D~~~~~LYw~D  495 (628)
T 4a0p_A          459 ERAALDG-TEREV---LFFS--------------------------GLSK----PIALALDSRLGKLFWAD  495 (628)
T ss_dssp             EEEETTS-CSCEE---EECS--------------------------SCSC----EEEEEEETTTTEEEEEE
T ss_pred             EEEeCCC-CCcEE---EEec--------------------------cCCC----ccEEEEeCCCCEEEEEe
Confidence            7666632 11221   1110                          0123    99999999999999999

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.74  E-value=0.00038  Score=61.62  Aligned_cols=65  Identities=11%  Similarity=0.082  Sum_probs=43.8

Q ss_pred             EEEcCC---CCeEEEEeccC-----ceEEEEEeCCCCCeeEEEEE-EecCcccccccCCCCCCceeEEEEcCCCCEEEEE
Q 027522            5 FLHDPS---KDIGFVGCALA-----STMVRFSKTQDGSWNHEVAI-SVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS   75 (222)
Q Consensus         5 ~afhP~---g~~aYvv~ELs-----stV~~~~~d~~g~~~~~q~i-s~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvS   75 (222)
                      ++|||+   ++++||.+.-.     +.|.++..+ ++++...+++ +-.|....+.      ..+..|.++||| +||++
T Consensus        80 ia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~-~~~~~~~~~l~~~~p~~~~~~------h~~~~l~~~pdG-~Lyv~  151 (352)
T 2ism_A           80 LALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHL-GERGVLDRVVLDGIPARPHGL------HSGGRIAFGPDG-MLYVT  151 (352)
T ss_dssp             EEECTTTTTSCEEEEEEEECTTSSEEEEEEEEEC-SSCEEEEEEEEEEECCCTTCC------CCCCCEEECTTS-CEEEE
T ss_pred             EEECCCCCCCCEEEEEEecCCCCCccEEEEEEeC-CCCcCceEEEEEeCCCCCCCC------cCCceEEECCCC-CEEEE
Confidence            689999   89999998754     779999875 3455544443 3222100111      234799999999 79999


Q ss_pred             eC
Q 027522           76 NW   77 (222)
Q Consensus        76 nR   77 (222)
                      .-
T Consensus       152 ~G  153 (352)
T 2ism_A          152 TG  153 (352)
T ss_dssp             CC
T ss_pred             EC
Confidence            74

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.73  E-value=0.0029  Score=52.01  Aligned_cols=100  Identities=10%  Similarity=0.088  Sum_probs=66.4

Q ss_pred             eEEEcCC---CCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            4 RFLHDPS---KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         4 r~afhP~---g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      .++|+|+   |+++++.++ +.+|.+|..+..+. .....+...    .        .....|.+|||+++|+++.. .+
T Consensus        44 ~~~~~~~~~~g~~l~~~~~-dg~i~iw~~~~~~~-~~~~~~~~h----~--------~~v~~~~~~~~~~~l~s~~~-dg  108 (368)
T 3mmy_A           44 CLSFSPPTLPGNFLIAGSW-ANDVRCWEVQDSGQ-TIPKAQQMH----T--------GPVLDVCWSDDGSKVFTASC-DK  108 (368)
T ss_dssp             EEEECCTTSSSEEEEEEET-TSEEEEEEECTTSC-EEEEEEEEC----S--------SCEEEEEECTTSSEEEEEET-TS
T ss_pred             EEEEcCCCCCceEEEEECC-CCcEEEEEcCCCCc-eeEEEeccc----c--------CCEEEEEECcCCCEEEEEcC-CC
Confidence            4789999   577777765 78899998753232 222222211    1        44689999999999987764 67


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEE--CCCCCEEEEEe
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL--SLDGKRLYVTN  153 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~l--spdGk~LyvaN  153 (222)
                      .|.+|++..   .+++.....                            ..    ..+.+++  +|+|++|+++.
T Consensus       109 ~v~iwd~~~---~~~~~~~~~----------------------------~~----~v~~~~~~~~~~~~~l~~~~  148 (368)
T 3mmy_A          109 TAKMWDLSS---NQAIQIAQH----------------------------DA----PVKTIHWIKAPNYSCVMTGS  148 (368)
T ss_dssp             EEEEEETTT---TEEEEEEEC----------------------------SS----CEEEEEEEECSSCEEEEEEE
T ss_pred             cEEEEEcCC---CCceeeccc----------------------------cC----ceEEEEEEeCCCCCEEEEcc
Confidence            899999853   334221111                            11    1567888  99999988886

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.73  E-value=0.0012  Score=55.28  Aligned_cols=107  Identities=7%  Similarity=-0.008  Sum_probs=70.9

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|||+++++....+ +.+|.+|... ++.  ..+.+....            .....+.++||+++|.++.. .+.|+
T Consensus        18 ~~~fsp~~~~l~s~~~-dg~v~lWd~~-~~~--~~~~~~~~~------------~~v~~~~~~~~~~~l~s~s~-d~~i~   80 (304)
T 2ynn_A           18 GIDFHPTEPWVLTTLY-SGRVELWNYE-TQV--EVRSIQVTE------------TPVRAGKFIARKNWIIVGSD-DFRIR   80 (304)
T ss_dssp             EEEECSSSSEEEEEET-TSEEEEEETT-TTE--EEEEEECCS------------SCEEEEEEEGGGTEEEEEET-TSEEE
T ss_pred             EEEECCCCCEEEEEcC-CCcEEEEECC-CCc--eeEEeeccC------------CcEEEEEEeCCCCEEEEECC-CCEEE
Confidence            4789999999988775 7899999774 332  223322211            33578999999999987774 67999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe--CCCCcccc
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN--SLFSAWDC  161 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN--sl~~~wd~  161 (222)
                      +|++..   ++.+..+..  .                         ..    .-+.++++|+|++|+.+.  .-..-||-
T Consensus        81 vwd~~~---~~~~~~~~~--h-------------------------~~----~v~~~~~~~~~~~l~sgs~D~~v~lWd~  126 (304)
T 2ynn_A           81 VFNYNT---GEKVVDFEA--H-------------------------PD----YIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (304)
T ss_dssp             EEETTT---CCEEEEEEC--C-------------------------SS----CEEEEEECSSSSEEEEEETTSCEEEEEG
T ss_pred             EEECCC---CcEEEEEeC--C-------------------------CC----cEEEEEEcCCCCEEEEECCCCeEEEEEC
Confidence            999843   334322221  0                         01    157899999999988774  22334653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.73  E-value=0.00045  Score=64.18  Aligned_cols=102  Identities=17%  Similarity=0.105  Sum_probs=64.9

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+|+++.+.++ +++|.+|..+ .+.+...+.  .   ...        .....|.+||||++|..+. ..+.|.+
T Consensus       454 va~spdg~~lasgs~-D~~v~lwd~~-~~~~~~~~~--~---~h~--------~~v~~v~fspdg~~las~s-~d~~v~~  517 (611)
T 1nr0_A          454 VALSNDKQFVAVGGQ-DSKVHVYKLS-GASVSEVKT--I---VHP--------AEITSVAFSNNGAFLVATD-QSRKVIP  517 (611)
T ss_dssp             EEECTTSCEEEEEET-TSEEEEEEEE-TTEEEEEEE--E---ECS--------SCEEEEEECTTSSEEEEEE-TTSCEEE
T ss_pred             EEEeCCCCEEEEeCC-CCeEEEEEcc-CCceeeeec--c---CCC--------CceEEEEECCCCCEEEEEc-CCCCEEE
Confidence            578888888877776 6778777663 233322221  1   111        4468999999999997666 4678999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++...  +++......+                           +.  .+....+++||||++|..+.
T Consensus       518 w~~~~~--~~~~~~~~~~---------------------------~H--~~~V~~v~fspdg~~lasgs  555 (611)
T 1nr0_A          518 YSVANN--FELAHTNSWT---------------------------FH--TAKVACVSWSPDNVRLATGS  555 (611)
T ss_dssp             EEGGGT--TEESCCCCCC---------------------------CC--SSCEEEEEECTTSSEEEEEE
T ss_pred             EEcCCC--Cceeeeeeee---------------------------ec--ccceeEEEECCCCCEEEEEE
Confidence            998542  3331100000                           00  11267899999999998876

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.73  E-value=0.00034  Score=61.36  Aligned_cols=101  Identities=11%  Similarity=0.049  Sum_probs=70.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      +.|++....+|+..-.+..|.++..+  |......++..      +-      ..+..|++.+.++.||++..+.+.|.+
T Consensus        40 ld~d~~~~~lyw~D~~~~~I~r~~~~--g~~~~~~~~~~------~l------~~p~glavd~~~g~ly~~d~~~~~I~~  105 (318)
T 3sov_A           40 VDFVFSHGLIYWSDVSEEAIKRTEFN--KTESVQNVVVS------GL------LSPDGLACDWLGEKLYWTDSETNRIEV  105 (318)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEETT--SSSCCCEEEEE------CC------SCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEeCCCEEEEEECCCCcEEEEEcc--CCCceEEEEcC------CC------CCccEEEEEcCCCeEEEEECCCCEEEE
Confidence            57888888999999888889988764  22111111111      11      235789999999999999999999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ++.+. ...+.   +...                          ....    |+.++++|.+.+||+++
T Consensus       106 ~~~dG-~~~~~---l~~~--------------------------~~~~----P~giavdp~~g~ly~td  140 (318)
T 3sov_A          106 SNLDG-SLRKV---LFWQ--------------------------ELDQ----PRAIALDPSSGFMYWTD  140 (318)
T ss_dssp             EETTS-CSCEE---EECS--------------------------SCSS----EEEEEEEGGGTEEEEEE
T ss_pred             EECCC-CcEEE---EEeC--------------------------CCCC----ccEEEEeCCCCEEEEEe
Confidence            98742 22222   1110                          1233    99999999999999998

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.73  E-value=0.0019  Score=53.01  Aligned_cols=105  Identities=12%  Similarity=0.224  Sum_probs=65.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+++++++.++ +.+|.+|.... +  .....+.       +.      .....+.+||++++|-++.  .+.|.+
T Consensus       221 ~~~s~~~~~l~s~s~-Dg~i~iwd~~~-~--~~~~~~~-------~~------~~v~~~~~~~~~~~~~~~~--d~~i~i  281 (340)
T 4aow_A          221 VTVSPDGSLCASGGK-DGQAMLWDLNE-G--KHLYTLD-------GG------DIINALCFSPNRYWLCAAT--GPSIKI  281 (340)
T ss_dssp             EEECTTSSEEEEEET-TCEEEEEETTT-T--EEEEEEE-------CS------SCEEEEEECSSSSEEEEEE--TTEEEE
T ss_pred             EEECCCCCEEEEEeC-CCeEEEEEecc-C--ceeeeec-------CC------ceEEeeecCCCCceeeccC--CCEEEE
Confidence            679999998887765 78888887642 2  2222221       11      3457899999999887764  689999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++..   ..++......-.        .            ....+..  +.-..++++|||++|+++.
T Consensus       282 wd~~~---~~~~~~~~~~~~--------~------------~~~~~h~--~~v~~l~~s~dg~~l~sgs  325 (340)
T 4aow_A          282 WDLEG---KIIVDELKQEVI--------S------------TSSKAEP--PQCTSLAWSADGQTLFAGY  325 (340)
T ss_dssp             EETTT---TEEEEEECCC---------------------------CCC--CCEEEEEECTTSSEEEEEE
T ss_pred             EECCC---CeEEEeccccce--------e------------eeccCCC--CCEEEEEECCCCCEEEEEe
Confidence            98843   444333321000        0            0001111  1246789999999998887

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.72  E-value=0.0008  Score=60.18  Aligned_cols=96  Identities=11%  Similarity=0.129  Sum_probs=65.3

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+|+++.+..+ +.+|.+|..  +|+.  .+++.       |..     .....+.+||||++|..+. ..+.|.+
T Consensus        22 ~a~spdg~~las~~~-d~~v~iWd~--~~~~--~~~l~-------gh~-----~~V~~l~fspdg~~las~~-~d~~i~v   83 (577)
T 2ymu_A           22 VAFSPDGQTIASASD-DKTVKLWNR--NGQL--LQTLT-------GHS-----SSVWGVAFSPDGQTIASAS-DDKTVKL   83 (577)
T ss_dssp             EEECTTSSCEEEEET-TSEEEEECT--TSCE--EEEEE-------CCS-----SCEEEEEECTTSSEEEEEE-TTSCEEE
T ss_pred             EEECCCCCEEEEEeC-CCEEEEEEC--CCCE--EEEEe-------CCC-----CCEEEEEECCCCCEEEEEe-CCCEEEE
Confidence            789999999888765 778888863  4432  23322       110     3468999999999997665 4678999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |+++    ++++..+..                             .  .+..+.++++|||++|..+.
T Consensus        84 Wd~~----~~~~~~~~~-----------------------------~--~~~v~~~~~s~d~~~l~~~~  117 (577)
T 2ymu_A           84 WNRN----GQLLQTLTG-----------------------------H--SSSVRGVAFSPDGQTIASAS  117 (577)
T ss_dssp             EETT----SCEEEEECC-----------------------------C--SSCEEEEEECTTSSEEEEEE
T ss_pred             EECC----CCEEEEEEC-----------------------------C--CCCEEEEEECCCCCEEEEEc
Confidence            9863    333322211                             0  11267899999999998775

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.70  E-value=0.0027  Score=55.14  Aligned_cols=108  Identities=9%  Similarity=0.043  Sum_probs=71.2

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++++|+++..|++..-..+|+.+..+  |+  ..+.+.+.     |.      .-.-.|.+.++|+ +|+++.+.+.+.+
T Consensus        32 la~~~~~~~L~aV~d~~~~I~~ld~~--g~--v~~~i~l~-----g~------~D~EGIa~~~~g~-~~vs~E~~~~l~~   95 (255)
T 3qqz_A           32 LTWSAQSNTLFSTINKPAAIVEMTTN--GD--LIRTIPLD-----FV------KDLETIEYIGDNQ-FVISDERDYAIYV   95 (255)
T ss_dssp             EEEETTTTEEEEEEETTEEEEEEETT--CC--EEEEEECS-----SC------SSEEEEEECSTTE-EEEEETTTTEEEE
T ss_pred             eEEeCCCCEEEEEECCCCeEEEEeCC--CC--EEEEEecC-----CC------CChHHeEEeCCCE-EEEEECCCCcEEE
Confidence            68999999999876668899998764  54  34554432     11      2246788999887 5577777789999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |+++.....+.+.++...                +...|         -+.+..-++++|++++||+++
T Consensus        96 ~~v~~~~~i~~~~~~~~~----------------~~~~~---------~N~g~EGLA~d~~~~~L~va~  139 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIP----------------LQESP---------TNCGFEGLAYSRQDHTFWFFK  139 (255)
T ss_dssp             EEECTTCCEEEEEEEECC----------------CSSCC---------CSSCCEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCeeeeeeeeccc----------------ccccc---------ccCCcceEEEeCCCCEEEEEE
Confidence            999653322223333321                00011         122467899999999999999

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.70  E-value=0.00041  Score=66.71  Aligned_cols=102  Identities=12%  Similarity=0.037  Sum_probs=70.8

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      =++|++.++.+|+..--...|.++..+  |.-. .++  +...+.         ..+..|++++.++.||+++...+.|.
T Consensus        44 ~ld~~~~~~~ly~sD~~~~~I~r~~~~--g~~~-~~~--v~~~~~---------~~P~GlAvD~~~~~ly~~d~~~~~I~  109 (619)
T 3s94_A           44 AVDFVFSHGLIYWSDVSEEAIKRTEFN--KTES-VQN--VVVSGL---------LSPDGLACDWLGEKLYWTDSETNRIE  109 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEC--------CEE--EECSSC---------SCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEEeCCCEEEEEECCCCeEEEEEcc--CCCc-eEE--EEeCCC---------CCcCeEEEEecCCEEEEEeCCCCEEE
Confidence            468999999999998777889988764  3311 111  111111         34689999999999999999999999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +++.+. ...+.   +-. +                         ....    ||.++++|.+.+||+|+
T Consensus       110 v~~~dG-~~~~~---l~~-~-------------------------~l~~----P~~Iavdp~~g~ly~tD  145 (619)
T 3s94_A          110 VSNLDG-SLRKV---LFW-Q-------------------------ELDQ----PRAIALDPSSGFMYWTD  145 (619)
T ss_dssp             EEETTS-CSCEE---EEC-S-------------------------SCSC----CCCEEEETTTTEEEEEE
T ss_pred             EEECCC-CCEEE---EEe-C-------------------------CCCC----CceEEEecCCCeEEEec
Confidence            998742 11111   111 0                         1233    99999999999999998

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.69  E-value=0.00037  Score=60.78  Aligned_cols=100  Identities=13%  Similarity=-0.036  Sum_probs=64.4

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|++...++..-.+.+|.+|... +++.  .+.+.       +.     ......|.+||||+.+.+|.-.+++|+
T Consensus       219 ~~~~~p~~~~~l~sg~~dg~v~~wd~~-~~~~--~~~~~-------~h-----~~~v~~v~fsp~g~~~lasgs~D~~i~  283 (344)
T 4gqb_B          219 SLAWHPQQSEVFVFGDENGTVSLVDTK-STSC--VLSSA-------VH-----SQCVTGLVFSPHSVPFLASLSEDCSLA  283 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEESC-C--C--CEEEE-------CC-----SSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred             eeeecCCCCcceEEeccCCcEEEEECC-CCcE--EEEEc-------CC-----CCCEEEEEEccCCCeEEEEEeCCCeEE
Confidence            478999877666666668889888763 2322  12211       11     034689999999965555555678999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++.   .++++   ...|.                             .+.-+.+++||+|++|+++.
T Consensus       284 vwd~~---~~~~~---~~~~H-----------------------------~~~V~~v~~sp~~~~llas~  318 (344)
T 4gqb_B          284 VLDSS---LSELF---RSQAH-----------------------------RDFVRDATWSPLNHSLLTTV  318 (344)
T ss_dssp             EECTT---CCEEE---EECCC-----------------------------SSCEEEEEECSSSTTEEEEE
T ss_pred             EEECC---CCcEE---EEcCC-----------------------------CCCEEEEEEeCCCCeEEEEE
Confidence            99874   34442   22111                             11267899999999998877

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.69  E-value=0.0015  Score=55.46  Aligned_cols=101  Identities=9%  Similarity=0.104  Sum_probs=67.2

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|+++++++..+ +++|.+|..+  ++  ....+...    .        .....|.+||+++++.+++-..+.|.
T Consensus       168 ~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~--~~~~~~~h----~--------~~v~~~~~~~~~~~~l~s~~~d~~i~  230 (383)
T 3ei3_B          168 CVDVSVSRQMLATGDS-TGRLLLLGLD--GH--EIFKEKLH----K--------AKVTHAEFNPRCDWLMATSSVDATVK  230 (383)
T ss_dssp             EEEEETTTTEEEEEET-TSEEEEEETT--SC--EEEEEECS----S--------SCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             EEEECCCCCEEEEECC-CCCEEEEECC--CC--EEEEeccC----C--------CcEEEEEECCCCCCEEEEEeCCCEEE
Confidence            4689999998887765 6888888763  32  12222211    1        44689999999995555555678999


Q ss_pred             EEEecCCC-CCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECC-CCCEEEEEe
Q 027522           84 QYNIEDPK-NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSL-DGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~-~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lsp-dGk~LyvaN  153 (222)
                      +|++.... ..+++.....                            ..    ....++++| ||++|+++.
T Consensus       231 iwd~~~~~~~~~~~~~~~~----------------------------~~----~v~~~~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          231 LWDLRNIKDKNSYIAEMPH----------------------------EK----PVNAAYFNPTDSTKLLTTD  270 (383)
T ss_dssp             EEEGGGCCSTTCEEEEEEC----------------------------SS----CEEEEEECTTTSCEEEEEE
T ss_pred             EEeCCCCCcccceEEEecC----------------------------CC----ceEEEEEcCCCCCEEEEEc
Confidence            99996422 2334322211                            11    267899999 999998887

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.68  E-value=0.00014  Score=63.15  Aligned_cols=106  Identities=17%  Similarity=0.185  Sum_probs=57.9

Q ss_pred             EEEcCCCCeEEEEecc-----CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC
Q 027522            5 FLHDPSKDIGFVGCAL-----ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH   79 (222)
Q Consensus         5 ~afhP~g~~aYvv~EL-----sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh   79 (222)
                      ++|+|||+++....+.     +.+|.+|.. .++...    ..+.......      .....+|..|||+++|-+|.  .
T Consensus        48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~-~~~~~~----~~~~~~~~~~------~~~V~~~~~s~d~~~l~~s~--d  114 (357)
T 4g56_B           48 VRYRRDGALLLAASSLSSRTWGGSIWVFKD-PEGAPN----ESLCTAGVQT------EAGVTDVAWVSEKGILVASD--S  114 (357)
T ss_dssp             EEECSSSCEEEEEECSSSSSCCEEEEEESS-CC---C----GGGCSEEEEC------SSCEEEEEEETTTEEEEEET--T
T ss_pred             EEECCCCCEEEEEcCCCCccccCeEEEEEC-CCCCcc----eeEecccCCC------CCCEEEEEEcCCCCEEEEEC--C
Confidence            5799999999888764     345655533 222110    0000000011      14468999999999886664  6


Q ss_pred             CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           80 GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        80 ~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ++|++|++.. ++...+.+....                           |.  .+.-+.++++|||++|+.+.
T Consensus       115 g~v~lWd~~~-~~~~~~~~~~~~---------------------------~h--~~~V~~v~~spdg~~l~sgs  158 (357)
T 4g56_B          115 GAVELWEILE-KESLLVNKFAKY---------------------------EH--DDIVKTLSVFSDGTQAVSGG  158 (357)
T ss_dssp             SCEEEC---------CCCCEEEC---------------------------CC--SSCEEEEEECSSSSEEEEEE
T ss_pred             CEEEEeeccc-cceeEEEeeccC---------------------------CC--CCCEEEEEECCCCCEEEEEe
Confidence            7899999954 222111111110                           11  01257899999999998875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.68  E-value=0.0025  Score=52.65  Aligned_cols=99  Identities=12%  Similarity=0.067  Sum_probs=66.4

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++....+ +.+|.+|... +++.  .+.+.       +.     ......|.+|||+++|+++.. .+.|.
T Consensus        28 ~~~~s~~~~~l~s~~~-dg~i~iw~~~-~~~~--~~~~~-------~h-----~~~v~~~~~~~~~~~l~s~~~-d~~i~   90 (312)
T 4ery_A           28 SVKFSPNGEWLASSSA-DKLIKIWGAY-DGKF--EKTIS-------GH-----KLGISDVAWSSDSNLLVSASD-DKTLK   90 (312)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEETT-TCCE--EEEEC-------CC-----SSCEEEEEECTTSSEEEEEET-TSEEE
T ss_pred             EEEECCCCCEEEEeeC-CCeEEEEeCC-Cccc--chhhc-------cC-----CCceEEEEEcCCCCEEEEECC-CCEEE
Confidence            4689999998877664 7788888753 3433  22221       11     034689999999999987774 67899


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++.+..+...                           ..    .-..++++|+|++|+.+.
T Consensus        91 vwd~~~---~~~~~~~~~~---------------------------~~----~v~~~~~~~~~~~l~s~~  126 (312)
T 4ery_A           91 IWDVSS---GKCLKTLKGH---------------------------SN----YVFCCNFNPQSNLIVSGS  126 (312)
T ss_dssp             EEETTT---CCEEEEEECC---------------------------SS----CEEEEEECSSSSEEEEEE
T ss_pred             EEECCC---CcEEEEEcCC---------------------------CC----CEEEEEEcCCCCEEEEEe
Confidence            999853   3443333210                           11    146789999999998875

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.67  E-value=0.00094  Score=61.94  Aligned_cols=30  Identities=10%  Similarity=-0.012  Sum_probs=21.5

Q ss_pred             CceeEEEEcCCCCEEE-EEeCCCC--cEEEEEe
Q 027522           58 GLITDFLISLDDRFLY-FSNWLHG--DIRQYNI   87 (222)
Q Consensus        58 ~~~adI~iSpDgrfLY-vSnRgh~--sI~vf~i   87 (222)
                      .....+.+||||++|+ .++|+.+  .|.+|++
T Consensus       255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~  287 (723)
T 1xfd_A          255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDA  287 (723)
T ss_dssp             EEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred             ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence            3457899999999994 5677654  4555555

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.67  E-value=0.00081  Score=61.03  Aligned_cols=135  Identities=16%  Similarity=0.113  Sum_probs=76.6

Q ss_pred             EEEcCCCCeEEEEecc-CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC---CCEEEEEe--CC
Q 027522            5 FLHDPSKDIGFVGCAL-ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD---DRFLYFSN--WL   78 (222)
Q Consensus         5 ~afhP~g~~aYvv~EL-sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD---grfLYvSn--Rg   78 (222)
                      ++|.|+|+ +| +.|. ..+|.++.. .+|+.+  .+..++.-...+.      ...-+|+++||   +++||++-  ..
T Consensus        37 ia~~pdG~-ll-Vter~~G~I~~v~~-~~g~~~--~v~~~~~v~~~g~------~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           37 LAPLPGGD-LL-VSSRDEATITRVDA-KTGRKT--ELGEVPGVSPSGE------GGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECTTSC-EE-EEETTTCEEEEECT-TTCCEE--EEEECTTCCCBTT------BSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EEEcCCCc-EE-EEEecCCEEEEEEC-CCCcEe--eecccCceeecCC------CCceeeEeccccccCCEEEEEEecCC
Confidence            68999997 44 5566 889998853 235432  2223332222333      45689999997   89999963  34


Q ss_pred             CCcEEEEEecCCC--CCeEE--EEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           79 HGDIRQYNIEDPK--NPVLT--GQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        79 h~sI~vf~i~d~~--~~~L~--~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                      .+.|..|..+...  ..++.  ..|..             +      .|.    .+.|   .++.|+++||| +|||+..
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~-------------~------~p~----~~~H---~g~~l~fgpDG-~Lyvt~G  158 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFR-------------G------IPK----GVIH---NGGRIAFGPDK-MLYAGTG  158 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEE-------------E------ECC----CSSC---CCCCEEECTTS-CEEEECB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEE-------------c------CCC----CCCc---cCccccCCCCC-CEEEEEC
Confidence            5678888775311  01221  11111             0      011    1222   37889999999 5999841


Q ss_pred             -CCCccccccccccccCCcEEEEEEee
Q 027522          155 -LFSAWDCQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       155 -l~~~wd~Q~yp~~~s~~~~i~~~dvd  180 (222)
                       --.....|+   ..+....|+|++.|
T Consensus       159 d~~~~~~~qd---~~~~~G~IlRi~~d  182 (347)
T 3das_A          159 ESGDTGLSQD---RKSLGGKILRMTPD  182 (347)
T ss_dssp             CTTCGGGTTC---TTCSTTCEEEECTT
T ss_pred             CCCCCccccC---CCCCCCEEEEEeCC
Confidence             111222232   12346889999765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.67  E-value=0.0016  Score=56.42  Aligned_cols=99  Identities=8%  Similarity=-0.014  Sum_probs=69.2

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC--CCCc
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW--LHGD   81 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR--gh~s   81 (222)
                      -++|+|+++++++.++ +++|.+|... +++.  ....  ..  ..        .....|.+||+++.|+++.-  ..+.
T Consensus       222 ~~~~~~~~~~l~s~~~-d~~v~iwd~~-~~~~--~~~~--~~--~~--------~~v~~~~~~p~~~~ll~~~~gs~d~~  285 (401)
T 4aez_A          222 GLAWRSDGLQLASGGN-DNVVQIWDAR-SSIP--KFTK--TN--HN--------AAVKAVAWCPWQSNLLATGGGTMDKQ  285 (401)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEETT-CSSE--EEEE--CC--CS--------SCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred             EEEEcCCCCEEEEEeC-CCeEEEccCC-CCCc--cEEe--cC--Cc--------ceEEEEEECCCCCCEEEEecCCCCCE
Confidence            3789999998888776 6788888764 2222  2211  11  01        34589999999999999875  4789


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |.+|++..   ++.+..+..                            +..    .+.++++|+|++|+++.
T Consensus       286 i~i~d~~~---~~~~~~~~~----------------------------~~~----v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          286 IHFWNAAT---GARVNTVDA----------------------------GSQ----VTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             EEEEETTT---CCEEEEEEC----------------------------SSC----EEEEEECSSSSEEEEEE
T ss_pred             EEEEECCC---CCEEEEEeC----------------------------CCc----EEEEEECCCCCeEEEEe
Confidence            99999843   445444433                            122    67899999999999975

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.67  E-value=0.00038  Score=63.95  Aligned_cols=125  Identities=13%  Similarity=0.227  Sum_probs=82.5

Q ss_pred             EeEEEcCCCC---eEEEEecc--CceEEEEEeC-CCCCeeEEEEEEecCcccccccCCCCCCceeEEEE--cCC-CC-EE
Q 027522            3 IRFLHDPSKD---IGFVGCAL--ASTMVRFSKT-QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLI--SLD-DR-FL   72 (222)
Q Consensus         3 vr~afhP~g~---~aYvv~EL--sstV~~~~~d-~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~i--SpD-gr-fL   72 (222)
                      +|--|+-+|+   .+|+.|.-  .++|.+|..+ +++.++....+.. |-. ++-      ..+..|.+  ||+ ++ |+
T Consensus        75 ~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~-pv~-t~~------~~pyGlcly~~~~~g~~ya  146 (355)
T 3amr_A           75 IRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDH-PIA-TAI------NEVYGFTLYHSQKTGKYYA  146 (355)
T ss_dssp             EEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTS-CEE-CCC------SSCCCEEEEECTTTCCEEE
T ss_pred             EecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccccc-CcC-CCC------CCeeEEEEEecCCCCcEEE
Confidence            4555554454   68999987  8999999886 3454432211100 100 000      33577888  885 55 79


Q ss_pred             EEEeCCCCcEEEEEecCCCCC----eEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCE
Q 027522           73 YFSNWLHGDIRQYNIEDPKNP----VLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKR  148 (222)
Q Consensus        73 YvSnRgh~sI~vf~i~d~~~~----~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~  148 (222)
                      ||++.. +.+.||++.+..++    +++.++.+++                            .    |..++.++...+
T Consensus       147 fV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lgs----------------------------q----~EgcvvDd~~g~  193 (355)
T 3amr_A          147 MVTGKE-GEFEQYELKADKNGYISGKKVRAFKMNS----------------------------Q----TEGMAADDEYGR  193 (355)
T ss_dssp             EEECSS-SEEEEEEEEECTTSCEEEEEEEEEECSS----------------------------C----EEEEEEETTTTE
T ss_pred             EEECCC-CeEEEEEEEeCCCCcccceEEEEecCCC----------------------------C----cceEEEcCCCCe
Confidence            999875 89999999765444    5555555532                            2    889999999999


Q ss_pred             EEEEeCCCCccccccccccccCCcEEEEEEeeCCCC
Q 027522          149 LYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKG  184 (222)
Q Consensus       149 LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G  184 (222)
                      |||+.        |       + ..|.++|.+++++
T Consensus       194 Lyv~e--------E-------d-~GIw~~da~p~~~  213 (355)
T 3amr_A          194 LYIAE--------E-------D-EAIWKFSAEPDGG  213 (355)
T ss_dssp             EEEEE--------T-------T-TEEEEEECSTTSC
T ss_pred             EEEec--------c-------c-ceEEEEeCCcCCC
Confidence            99998        4       3 4488898877764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.67  E-value=8.4e-05  Score=64.29  Aligned_cols=74  Identities=9%  Similarity=0.042  Sum_probs=51.8

Q ss_pred             EeEEEcCCCCeEEEEe--ccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            3 IRFLHDPSKDIGFVGC--ALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         3 vr~afhP~g~~aYvv~--ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      .+++|+|+++++++..  .-+.+|.+|.... +... .....+.     ..      .....+.+|||+++||+++...+
T Consensus       224 ~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~-~~~~-~~~~~~~-----~~------~~v~~~~~s~~~~~l~~~g~~dg  290 (402)
T 2aq5_A          224 VHAVFVSEGKILTTGFSRMSERQVALWDTKH-LEEP-LSLQELD-----TS------SGVLLPFFDPDTNIVYLCGKGDS  290 (402)
T ss_dssp             CEEEECSTTEEEEEEECTTCCEEEEEEETTB-CSSC-SEEEECC-----CC------SSCEEEEEETTTTEEEEEETTCS
T ss_pred             eEEEEcCCCcEEEEeccCCCCceEEEEcCcc-ccCC-ceEEecc-----CC------CceeEEEEcCCCCEEEEEEcCCC
Confidence            4688999999887774  3567888887642 2210 1111111     11      33578999999999999998899


Q ss_pred             cEEEEEecC
Q 027522           81 DIRQYNIED   89 (222)
Q Consensus        81 sI~vf~i~d   89 (222)
                      .|.+|++..
T Consensus       291 ~i~i~d~~~  299 (402)
T 2aq5_A          291 SIRYFEITS  299 (402)
T ss_dssp             CEEEEEECS
T ss_pred             eEEEEEecC
Confidence            999999954

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.65  E-value=0.0019  Score=56.25  Aligned_cols=110  Identities=19%  Similarity=0.195  Sum_probs=64.3

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEec------CcccccccCCCCCCceeEEEEcCCCCEEEEEeC
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVK------SLKVQNWILPEMPGLITDFLISLDDRFLYFSNW   77 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~------p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR   77 (222)
                      .++|+|+|+++.+.+  +.+|.+|... +|+...  .+.-.      +........+........+.+||||++|..+. 
T Consensus        69 ~v~fspdg~~la~g~--~~~v~i~~~~-~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~-  142 (393)
T 1erj_A           69 CVKFSNDGEYLATGC--NKTTQVYRVS-DGSLVA--RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA-  142 (393)
T ss_dssp             EEEECTTSSEEEEEC--BSCEEEEETT-TCCEEE--EECC-----------------CCCCBEEEEEECTTSSEEEEEE-
T ss_pred             EEEECCCCCEEEEEc--CCcEEEEEec-CCCEEE--EecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc-
Confidence            367999999887765  5677777653 444321  11110      00000000000112367999999999998766 


Q ss_pred             CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           78 LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        78 gh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ..+.|.+|++..   ++++..+.                             |..  +....++++|+|++|+.+.
T Consensus       143 ~d~~i~iwd~~~---~~~~~~~~-----------------------------~h~--~~v~~~~~~p~~~~l~s~s  184 (393)
T 1erj_A          143 EDRLIRIWDIEN---RKIVMILQ-----------------------------GHE--QDIYSLDYFPSGDKLVSGS  184 (393)
T ss_dssp             TTSCEEEEETTT---TEEEEEEC-----------------------------CCS--SCEEEEEECTTSSEEEEEE
T ss_pred             CCCeEEEEECCC---CcEEEEEc-----------------------------cCC--CCEEEEEEcCCCCEEEEec
Confidence            478999999843   44432221                             110  1156899999999998775

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.64  E-value=0.0005  Score=61.37  Aligned_cols=103  Identities=18%  Similarity=0.223  Sum_probs=68.1

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCC--CeeEEEEEEecCcccccccCCCCCCc-eeEEEEcC--CCCEEEEEeCC
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDG--SWNHEVAISVKSLKVQNWILPEMPGL-ITDFLISL--DDRFLYFSNWL   78 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g--~~~~~q~is~~p~~~~g~~~~~~~~~-~adI~iSp--DgrfLYvSnRg   78 (222)
                      .++|+|+|+++.+.+  +.+|.+|..+ ++  ..+..+.+  .     +.     ... ...+.+||  |+++|+++.. 
T Consensus        23 ~~~~spdg~~l~~~~--~~~v~v~~~~-~~~~~~~~~~~~--~-----~h-----~~~~v~~~~~sp~~~~~~l~s~~~-   86 (615)
T 1pgu_A           23 HLSYDPTTNAIAYPC--GKSAFVRCLD-DGDSKVPPVVQF--T-----GH-----GSSVVTTVKFSPIKGSQYLCSGDE-   86 (615)
T ss_dssp             CCEEETTTTEEEEEE--TTEEEEEECC-SSCCSSCSEEEE--C-----TT-----TTSCEEEEEECSSTTCCEEEEEET-
T ss_pred             EEEECCCCCEEEEec--CCeEEEEECC-CCCCccccceEE--e-----cC-----CCceEEEEEECcCCCCCEEEEecC-
Confidence            478999999988887  6788888764 33  11112221  1     11     134 68999999  9999988775 


Q ss_pred             CCcEEEEEecCCC-----CCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           79 HGDIRQYNIEDPK-----NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        79 h~sI~vf~i~d~~-----~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .+.|.+|++....     ..++...+..                               ..+..+.++++|||++|+++.
T Consensus        87 dg~v~vw~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~v~~~~~s~~~~~l~~~~  135 (615)
T 1pgu_A           87 SGKVIVWGWTFDKESNSVEVNVKSEFQV-------------------------------LAGPISDISWDFEGRRLCVVG  135 (615)
T ss_dssp             TSEEEEEEEEEEGGGTEEEEEEEEEEEC-------------------------------CSSCEEEEEECTTSSEEEEEE
T ss_pred             CCEEEEEeCCCCcccccccccccchhhc-------------------------------ccccEEEEEEeCCCCEEEEec
Confidence            7899999995310     1223222221                               011268999999999999886

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.63  E-value=0.00071  Score=58.94  Aligned_cols=69  Identities=9%  Similarity=-0.039  Sum_probs=50.3

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+|+++....+ +.+|.+|... +++  ..++   ..    +.     ......+.+|||++.+++|+-.++.|++
T Consensus       133 v~~spdg~~l~sgs~-d~~i~iwd~~-~~~--~~~~---~~----~h-----~~~V~~~~~~~~~~~~l~s~s~D~~v~i  196 (344)
T 4gqb_B          133 VSVLSSGTQAVSGSK-DICIKVWDLA-QQV--VLSS---YR----AH-----AAQVTCVAASPHKDSVFLSCSEDNRILL  196 (344)
T ss_dssp             EEECTTSSEEEEEET-TSCEEEEETT-TTE--EEEE---EC----CC-----SSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             EEECCCCCEEEEEeC-CCeEEEEECC-CCc--EEEE---Ec----Cc-----CCceEEEEecCCCCCceeeecccccccc
Confidence            679999999888776 7788888764 332  2222   21    11     0446889999999988888878899999


Q ss_pred             EEecC
Q 027522           85 YNIED   89 (222)
Q Consensus        85 f~i~d   89 (222)
                      |++..
T Consensus       197 wd~~~  201 (344)
T 4gqb_B          197 WDTRC  201 (344)
T ss_dssp             EETTS
T ss_pred             ccccc
Confidence            99853

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.0065  Score=50.28  Aligned_cols=102  Identities=12%  Similarity=0.026  Sum_probs=67.3

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC--CCEEEEEeCCCCcE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD--DRFLYFSNWLHGDI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD--grfLYvSnRgh~sI   82 (222)
                      ++|+|+++++.+.++ +.+|.+|..+. +.....+.+.   .. .        .....|.+|++  +++|+++.. .+.|
T Consensus        17 ~~~s~~~~~l~~~~~-dg~i~iw~~~~-~~~~~~~~~~---~h-~--------~~v~~~~~~~~~~~~~l~s~~~-dg~v   81 (379)
T 3jrp_A           17 AVLDYYGKRLATCSS-DKTIKIFEVEG-ETHKLIDTLT---GH-E--------GPVWRVDWAHPKFGTILASCSY-DGKV   81 (379)
T ss_dssp             EEECSSSSEEEEEET-TSCEEEEEEET-TEEEEEEEEC---CC-S--------SCEEEEEECCGGGCSEEEEEET-TSCE
T ss_pred             EEEcCCCCEEEEEEC-CCcEEEEecCC-CcceeeeEec---CC-C--------CcEEEEEeCCCCCCCEEEEecc-CCEE
Confidence            689999999887776 78888887742 2333333221   11 1        34689999988  999988875 6789


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCC--CCEEEEEe
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLD--GKRLYVTN  153 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspd--Gk~LyvaN  153 (222)
                      .+|++.. .....+.....                           ...    ..+.++++|+  |++|+++.
T Consensus        82 ~iwd~~~-~~~~~~~~~~~---------------------------~~~----~v~~~~~~~~~~~~~l~~~~  122 (379)
T 3jrp_A           82 LIWKEEN-GRWSQIAVHAV---------------------------HSA----SVNSVQWAPHEYGPLLLVAS  122 (379)
T ss_dssp             EEEEEET-TEEEEEEEECC---------------------------CSS----CEEEEEECCGGGCSEEEEEE
T ss_pred             EEEEcCC-CceeEeeeecC---------------------------CCc----ceEEEEeCCCCCCCEEEEec
Confidence            9999964 21112111110                           011    2678999999  99998886

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.62  E-value=0.0029  Score=53.39  Aligned_cols=87  Identities=8%  Similarity=0.118  Sum_probs=54.4

Q ss_pred             eEEEcCCCCeEEEEeccC--ceEEEEEeCCCCCeeEEEEEEecCccc----ccccCCCCCCceeEEEEcCCCCEEEEEeC
Q 027522            4 RFLHDPSKDIGFVGCALA--STMVRFSKTQDGSWNHEVAISVKSLKV----QNWILPEMPGLITDFLISLDDRFLYFSNW   77 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELs--stV~~~~~d~~g~~~~~q~is~~p~~~----~g~~~~~~~~~~adI~iSpDgrfLYvSnR   77 (222)
                      .++|+|+++++++.++-+  .+|.+|... ++  +....+..++.+.    ....   -......|.+|||+++|+++. 
T Consensus       238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~-~~--~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-  310 (397)
T 1sq9_A          238 SVKFSPQGSLLAIAHDSNSFGCITLYETE-FG--ERIGSLSVPTHSSQASLGEFA---HSSWVMSLSFNDSGETLCSAG-  310 (397)
T ss_dssp             EEEECSSTTEEEEEEEETTEEEEEEEETT-TC--CEEEEECBC--------CCBS---BSSCEEEEEECSSSSEEEEEE-
T ss_pred             eEEECCCCCEEEEEecCCCCceEEEEECC-CC--cccceeccCcccccccccccc---cCCcEEEEEECCCCCEEEEEe-
Confidence            478999999988887622  678888764 33  2233332211000    0000   014568999999999998877 


Q ss_pred             CCCcEEEEEecCCCCCeEEEEEE
Q 027522           78 LHGDIRQYNIEDPKNPVLTGQIW  100 (222)
Q Consensus        78 gh~sI~vf~i~d~~~~~L~~~v~  100 (222)
                      ..+.|.+|++..   ++++..+.
T Consensus       311 ~dg~i~iwd~~~---~~~~~~~~  330 (397)
T 1sq9_A          311 WDGKLRFWDVKT---KERITTLN  330 (397)
T ss_dssp             TTSEEEEEETTT---TEEEEEEE
T ss_pred             CCCeEEEEEcCC---CceeEEEe
Confidence            477899999843   55655554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.00099  Score=56.00  Aligned_cols=68  Identities=13%  Similarity=0.080  Sum_probs=46.9

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|++ +++ .+-.+.+|.+|... ++  +....+...    .        .....|.+||||++|++++. .+.|.
T Consensus       294 ~~~~~~~~-~l~-~~~~d~~i~i~d~~-~~--~~~~~~~~~----~--------~~i~~~~~s~~~~~l~~~~~-dg~i~  355 (425)
T 1r5m_A          294 SASWVGDD-KVI-SCSMDGSVRLWSLK-QN--TLLALSIVD----G--------VPIFAGRISQDGQKYAVAFM-DGQVN  355 (425)
T ss_dssp             EEEEETTT-EEE-EEETTSEEEEEETT-TT--EEEEEEECT----T--------CCEEEEEECTTSSEEEEEET-TSCEE
T ss_pred             EEEECCCC-EEE-EEeCCCcEEEEECC-CC--cEeEecccC----C--------ccEEEEEEcCCCCEEEEEEC-CCeEE
Confidence            57899999 444 44457889888764 33  223332221    1        34689999999999988874 67999


Q ss_pred             EEEecC
Q 027522           84 QYNIED   89 (222)
Q Consensus        84 vf~i~d   89 (222)
                      +|++..
T Consensus       356 i~~~~~  361 (425)
T 1r5m_A          356 VYDLKK  361 (425)
T ss_dssp             EEECHH
T ss_pred             EEECCC
Confidence            999964

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.60  E-value=0.0028  Score=52.36  Aligned_cols=99  Identities=10%  Similarity=0.177  Sum_probs=65.2

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|++++++..++ +.+|.+|... +++.  .+.+..   . .        .....+.+|||+++|+++.. .+.|.+
T Consensus       113 ~~~~~~~~~l~s~~~-d~~i~iwd~~-~~~~--~~~~~~---~-~--------~~v~~~~~~~~~~~l~~~~~-d~~i~~  175 (312)
T 4ery_A          113 CNFNPQSNLIVSGSF-DESVRIWDVK-TGKC--LKTLPA---H-S--------DPVSAVHFNRDGSLIVSSSY-DGLCRI  175 (312)
T ss_dssp             EEECSSSSEEEEEET-TSCEEEEETT-TCCE--EEEECC---C-S--------SCEEEEEECTTSSEEEEEET-TSCEEE
T ss_pred             EEEcCCCCEEEEEeC-CCcEEEEECC-CCEE--EEEecC---C-C--------CcEEEEEEcCCCCEEEEEeC-CCcEEE
Confidence            579999998887765 7788888763 3322  222211   1 1        34688999999999987764 678999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++..   ++.+..+...                          ....    -..++++|+|++|+++.
T Consensus       176 wd~~~---~~~~~~~~~~--------------------------~~~~----~~~~~~~~~~~~l~~~~  211 (312)
T 4ery_A          176 WDTAS---GQCLKTLIDD--------------------------DNPP----VSFVKFSPNGKYILAAT  211 (312)
T ss_dssp             EETTT---CCEEEEECCS--------------------------SCCC----EEEEEECTTSSEEEEEE
T ss_pred             EECCC---CceeeEEecc--------------------------CCCc----eEEEEECCCCCEEEEEc
Confidence            99843   3332222110                          0111    45789999999999886

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.59  E-value=0.003  Score=54.98  Aligned_cols=98  Identities=11%  Similarity=0.071  Sum_probs=66.3

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|+|++++...+ +.+|.+|... +++.  ..+   .    .+.     ......+.+||||++|+.+. ..+.|.
T Consensus       128 ~v~~s~dg~~l~s~~~-d~~i~iwd~~-~~~~--~~~---~----~~h-----~~~v~~~~~~p~~~~l~s~s-~d~~v~  190 (393)
T 1erj_A          128 SVCFSPDGKFLATGAE-DRLIRIWDIE-NRKI--VMI---L----QGH-----EQDIYSLDYFPSGDKLVSGS-GDRTVR  190 (393)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEETT-TTEE--EEE---E----CCC-----SSCEEEEEECTTSSEEEEEE-TTSEEE
T ss_pred             EEEECCCCCEEEEEcC-CCeEEEEECC-CCcE--EEE---E----ccC-----CCCEEEEEEcCCCCEEEEec-CCCcEE
Confidence            3789999999888776 7889998764 3321  222   1    111     03468999999999997665 578999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECC-CCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSL-DGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lsp-dGk~LyvaN  153 (222)
                      +|++..   ++....+..                                .++.+.++++| ||++|+++.
T Consensus       191 iwd~~~---~~~~~~~~~--------------------------------~~~v~~~~~~~~~~~~l~~~s  226 (393)
T 1erj_A          191 IWDLRT---GQCSLTLSI--------------------------------EDGVTTVAVSPGDGKYIAAGS  226 (393)
T ss_dssp             EEETTT---TEEEEEEEC--------------------------------SSCEEEEEECSTTCCEEEEEE
T ss_pred             EEECCC---CeeEEEEEc--------------------------------CCCcEEEEEECCCCCEEEEEc
Confidence            999843   444322221                                11267889999 898888775

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.58  E-value=0.0003  Score=59.40  Aligned_cols=72  Identities=13%  Similarity=0.047  Sum_probs=48.5

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++++.++ +.+|.+|..+....+...+.+..+   ..        .....|.+|||+++|.++.. .+.|.
T Consensus       105 ~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~---h~--------~~v~~~~~~~~~~~l~~~~~-d~~i~  171 (377)
T 3dwl_C          105 FVRWSPNEDKFAVGSG-ARVISVCYFEQENDWWVSKHLKRP---LR--------STILSLDWHPNNVLLAAGCA-DRKAY  171 (377)
T ss_dssp             EEECCTTSSCCEEEES-SSCEEECCC-----CCCCEEECSS---CC--------SCEEEEEECTTSSEEEEEES-SSCEE
T ss_pred             EEEECCCCCEEEEEec-CCeEEEEEECCcccceeeeEeecc---cC--------CCeEEEEEcCCCCEEEEEeC-CCEEE
Confidence            4689999998888877 778888766432223223332210   11        45689999999999987765 57899


Q ss_pred             EEEec
Q 027522           84 QYNIE   88 (222)
Q Consensus        84 vf~i~   88 (222)
                      +|++.
T Consensus       172 iwd~~  176 (377)
T 3dwl_C          172 VLSAY  176 (377)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99995

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.57  E-value=0.00035  Score=59.26  Aligned_cols=71  Identities=17%  Similarity=0.057  Sum_probs=40.7

Q ss_pred             eEEEcC-CCCeEEEEecc-----CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEE-EEEe
Q 027522            4 RFLHDP-SKDIGFVGCAL-----ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFL-YFSN   76 (222)
Q Consensus         4 r~afhP-~g~~aYvv~EL-----sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfL-YvSn   76 (222)
                      .++|+| +|+.+..+.+-     ...|+++..+ .+..   +  .+.... .+       .....+.+||||+.| |+++
T Consensus       192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~~~---~--~l~~~~-~~-------~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINED-GTNM---R--KVKTHA-EG-------ESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             EEEEETTEEEEEEEEECSCTTTSSCSEEEEETT-SCCC---E--ESCCCC-TT-------EEEEEEEECTTSSCEEEEEE
T ss_pred             ccEECCCCCCEEEEEEecCCCCCcceEEEEeCC-CCce---E--EeeeCC-CC-------cccccceECCCCCEEEEEec
Confidence            467999 88866555543     3367777643 2221   1  111110 00       124577899999976 7787


Q ss_pred             CCCC-c--EEEEEec
Q 027522           77 WLHG-D--IRQYNIE   88 (222)
Q Consensus        77 Rgh~-s--I~vf~i~   88 (222)
                      +... .  |.+|++.
T Consensus       258 ~~~~~~~~l~~~d~~  272 (388)
T 3pe7_A          258 LKGSPDRFIYSADPE  272 (388)
T ss_dssp             ETTCCCEEEEEECTT
T ss_pred             CCCCCcceEEEEecC
Confidence            7443 3  7777663

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.57  E-value=0.0032  Score=58.47  Aligned_cols=30  Identities=23%  Similarity=0.485  Sum_probs=21.2

Q ss_pred             CceeEEEEcCCCCEEEEE--eCCCC--cEEEEEe
Q 027522           58 GLITDFLISLDDRFLYFS--NWLHG--DIRQYNI   87 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvS--nRgh~--sI~vf~i   87 (222)
                      .....+.+||||++|+++  ++..+  .|.+|++
T Consensus       258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~  291 (706)
T 2z3z_A          258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA  291 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET
T ss_pred             eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC
Confidence            346899999999999984  44443  5555555

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.57  E-value=0.0035  Score=53.27  Aligned_cols=101  Identities=9%  Similarity=0.076  Sum_probs=65.6

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|++++++...+ +.+|.+|... ++..  .+.+.       +.     ......|.+||||++|.++. ..+.|+
T Consensus       189 ~~~~~~~~~~l~sg~~-d~~v~~wd~~-~~~~--~~~~~-------~h-----~~~v~~v~~~p~~~~l~s~s-~d~~v~  251 (340)
T 1got_B          189 SLSLAPDTRLFVSGAC-DASAKLWDVR-EGMC--RQTFT-------GH-----ESDINAICFFPNGNAFATGS-DDATCR  251 (340)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEETT-TCSE--EEEEC-------CC-----SSCEEEEEECTTSSEEEEEE-TTSCEE
T ss_pred             EEEECCCCCEEEEEeC-CCcEEEEECC-CCee--EEEEc-------CC-----cCCEEEEEEcCCCCEEEEEc-CCCcEE
Confidence            4689999987776665 7888888763 3322  22221       11     13468999999999987766 477999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   .+.+.....                             .....+...++++|+|++|+++.
T Consensus       252 iwd~~~---~~~~~~~~~-----------------------------~~~~~~v~~~~~s~~g~~l~~g~  289 (340)
T 1got_B          252 LFDLRA---DQELMTYSH-----------------------------DNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             EEETTT---TEEEEEECC-----------------------------TTCCSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCC---CcEEEEEcc-----------------------------CCcccceEEEEECCCCCEEEEEC
Confidence            999843   333221111                             00011256799999999998887

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.56  E-value=0.0031  Score=52.66  Aligned_cols=56  Identities=16%  Similarity=-0.040  Sum_probs=34.2

Q ss_pred             eEEEcCCCCeEEEEeccC----ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEe
Q 027522            4 RFLHDPSKDIGFVGCALA----STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN   76 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELs----stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSn   76 (222)
                      .++|+|+|++++.+..-.    ..|+++..+ .|+  ..+.....             . ...+..||||+.|+++.
T Consensus        63 ~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~-~g~--~~~l~~~~-------------~-~~~~~wspdg~~l~~~~  122 (347)
T 2gop_A           63 MPRISPDGKKIAFMRANEEKKVSEIWVADLE-TLS--SKKILEAK-------------N-IRSLEWNEDSRKLLIVG  122 (347)
T ss_dssp             EEEECTTSSEEEEEEEETTTTEEEEEEEETT-TTE--EEEEEEES-------------E-EEEEEECTTSSEEEEEE
T ss_pred             CeEECCCCCEEEEEEeccCCCcceEEEEECC-CCc--eEEEEcCC-------------C-ccceeECCCCCEEEEEE
Confidence            368999998766655432    346666543 332  22222211             2 47889999999887765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.55  E-value=0.00028  Score=69.96  Aligned_cols=44  Identities=11%  Similarity=0.061  Sum_probs=30.6

Q ss_pred             CeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCC---CCeee-ccceeEecC
Q 027522          137 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEK---GGMAI-NPNFFVDFE  197 (222)
Q Consensus       137 Pr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~---G~l~~-~~~f~vdf~  197 (222)
                      ++.+++||||++|++++        +       +  .|..+|+++.+   +.+.+ +-++.+|..
T Consensus       610 v~~~~~S~DG~~l~~~~--------~-------~--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~  657 (1045)
T 1k32_A          610 LTDLRLSADRKTVMVRK--------D-------D--GKIYTFPLEKPEDERTVETDKRPLVSSIH  657 (1045)
T ss_dssp             EEEEEECTTSCEEEEEE--------T-------T--SCEEEEESSCTTSCEECCCCSSCEEEEHH
T ss_pred             cceEEECCCCCEEEEEc--------C-------C--cEEEEeCccCcccCCccccceeEEEEChh
Confidence            56789999999999998        3       3  46667665433   33566 567777653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.0046  Score=51.18  Aligned_cols=107  Identities=11%  Similarity=0.082  Sum_probs=66.2

Q ss_pred             eEEEcC-------------CCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC-
Q 027522            4 RFLHDP-------------SKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD-   68 (222)
Q Consensus         4 r~afhP-------------~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD-   68 (222)
                      .++|+|             +++++++.++ +.+|.+|.... ...+.....+...    .        .....|.+||| 
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~h----~--------~~v~~~~~sp~~  218 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQTYVLESTLEGH----S--------DWVRDVAWSPTV  218 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEEET-TSCEEEEEEETTTTEEEEEEEECCC----S--------SCEEEEEECCCC
T ss_pred             EEEEcCccccccccccCCCCCCEEEEEeC-CCeEEEEEecCCCcceeeEEEEecc----c--------CcEeEEEECCCC
Confidence            467888             6888777765 77888887642 2223222222110    1        34689999999 


Q ss_pred             --CCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCC
Q 027522           69 --DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDG  146 (222)
Q Consensus        69 --grfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdG  146 (222)
                        +++|+++. ..+.|.+|++........ ..+..                            .....+....++++|||
T Consensus       219 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~~~----------------------------~~~~~~~v~~~~~s~~g  268 (379)
T 3jrp_A          219 LLRSYLASVS-QDRTCIIWTQDNEQGPWK-KTLLK----------------------------EEKFPDVLWRASWSLSG  268 (379)
T ss_dssp             SSSEEEEEEE-TTSCEEEEEESSTTSCCE-EEESS----------------------------SSCCSSCEEEEEECSSS
T ss_pred             CCCCeEEEEe-CCCEEEEEeCCCCCccce-eeeec----------------------------cccCCCcEEEEEEcCCC
Confidence              78877665 578899999964322211 11111                            00111225788999999


Q ss_pred             CEEEEEe
Q 027522          147 KRLYVTN  153 (222)
Q Consensus       147 k~LyvaN  153 (222)
                      ++|+++.
T Consensus       269 ~~l~~~~  275 (379)
T 3jrp_A          269 NVLALSG  275 (379)
T ss_dssp             CCEEEEE
T ss_pred             CEEEEec
Confidence            9999887

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.55  E-value=0.001  Score=61.71  Aligned_cols=110  Identities=9%  Similarity=-0.053  Sum_probs=61.3

Q ss_pred             eEEEcCCCCeEEEE-eccCc----eEEEEEeC--CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEe
Q 027522            4 RFLHDPSKDIGFVG-CALAS----TMVRFSKT--QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN   76 (222)
Q Consensus         4 r~afhP~g~~aYvv-~ELss----tV~~~~~d--~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSn   76 (222)
                      .++|+|+|++++++ ++-+.    +..++.++  ..+.-...+  .+.+.   .+      .....+.+||||++||++.
T Consensus       310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~--~l~~~---~~------~~~~~~~~spdg~~l~~~~  378 (723)
T 1xfd_A          310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ--SITSG---DW------DVTKILAYDEKGNKIYFLS  378 (723)
T ss_dssp             CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC--BSCCS---SS------CEEEEEEEETTTTEEEEEE
T ss_pred             CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcccee--EeecC---Ce------EEEeeeEEcCCCCEEEEEE
Confidence            46899999987776 77666    44444444  223200001  11111   11      1123368999999998665


Q ss_pred             CCC--CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           77 WLH--GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        77 Rgh--~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ...  +.+.+|+++..+..+.   ..+.+                          +..-.++.+.+++||||++|+++.
T Consensus       379 ~~~~~~~~~l~~~~~~~~~~~---~~l~~--------------------------~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          379 TEDLPRRRQLYSANTVGNFNR---QCLSC--------------------------DLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             SSSCTTCCEEEEECSSTTCCC---BCSST--------------------------TSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             cCCCCcceEEEEEeCCCCCCc---ceecc--------------------------cccCCCCeEEEEECCCCCEEEEEc
Confidence            444  7889999953221111   00100                          000011267899999999999886

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.53  E-value=0.00052  Score=61.42  Aligned_cols=96  Identities=10%  Similarity=0.108  Sum_probs=64.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+++++.+.++ +.+|.+|..  +|+.  .+.+.       +.     ......|.+||||++|..+. .++.|++
T Consensus       473 ~~~spd~~~las~~~-d~~i~iw~~--~~~~--~~~~~-------~h-----~~~v~~l~~s~dg~~l~s~~-~dg~v~l  534 (577)
T 2ymu_A          473 VAFSPDGQTIASASD-DKTVKLWNR--NGQL--LQTLT-------GH-----SSSVRGVAFSPDGQTIASAS-DDKTVKL  534 (577)
T ss_dssp             EEECTTSCEEEEEET-TSEEEEEET--TSCE--EEEEE-------CC-----SSCEEEEEECTTSSCEEEEE-TTSEEEE
T ss_pred             EEEcCCCCEEEEEeC-CCEEEEEcC--CCCE--EEEEe-------CC-----CCCEEEEEEcCCCCEEEEEE-CcCEEEE
Confidence            689999998887776 778888864  3432  22222       11     03468999999999998766 4678999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |+.+    ++++.....  .                         .    +....+++||||++|+.+.
T Consensus       535 wd~~----~~~~~~~~~--h-------------------------~----~~v~~~~fs~dg~~l~s~~  568 (577)
T 2ymu_A          535 WNRN----GQLLQTLTG--H-------------------------S----SSVWGVAFSPDGQTIASAS  568 (577)
T ss_dssp             ECTT----SCEEEEEEC--C-------------------------S----SCEEEEEECTTSSCEEEEE
T ss_pred             EeCC----CCEEEEEcC--C-------------------------C----CCEEEEEEcCCCCEEEEEe
Confidence            9752    334333221  0                         1    1256899999999998775

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.53  E-value=0.0032  Score=58.78  Aligned_cols=100  Identities=12%  Similarity=0.050  Sum_probs=67.9

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|+++++.+..+ +++|.+|... +|+.  .+.+...    .        .....+.+||||++|+++. ..+.|.
T Consensus        60 ~~~~s~~~~~l~~~~~-dg~i~vw~~~-~~~~--~~~~~~~----~--------~~v~~~~~s~~~~~l~~~~-~dg~i~  122 (814)
T 3mkq_A           60 AGKFIARKNWIIVGSD-DFRIRVFNYN-TGEK--VVDFEAH----P--------DYIRSIAVHPTKPYVLSGS-DDLTVK  122 (814)
T ss_dssp             EEEEEGGGTEEEEEET-TSEEEEEETT-TCCE--EEEEECC----S--------SCEEEEEECSSSSEEEEEE-TTSEEE
T ss_pred             EEEEeCCCCEEEEEeC-CCeEEEEECC-CCcE--EEEEecC----C--------CCEEEEEEeCCCCEEEEEc-CCCEEE
Confidence            3689999999999988 8899999874 3432  2222211    1        4468999999999998776 467899


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECC-CCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSL-DGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lsp-dGk~LyvaN  153 (222)
                      +|++...  ..+...+..                           ...    ....++++| +|+.|+++.
T Consensus       123 vw~~~~~--~~~~~~~~~---------------------------~~~----~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A          123 LWNWENN--WALEQTFEG---------------------------HEH----FVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             EEEGGGT--SEEEEEEEC---------------------------CSS----CEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCC--ceEEEEEcC---------------------------CCC----cEEEEEEEcCCCCEEEEEe
Confidence            9999541  233222221                           011    157889999 888887776

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.51  E-value=0.006  Score=51.76  Aligned_cols=105  Identities=10%  Similarity=0.062  Sum_probs=64.4

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCC--C--CeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQD--G--SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH   79 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~--g--~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh   79 (222)
                      .++|+|+++++.+..+ +.+|.+|.....  .  .....++   .    .+.     ......+.+||||++|..+.. .
T Consensus        63 ~v~~sp~~~~las~s~-D~~v~iw~~~~~~~~~~~~~~~~~---~----~~h-----~~~V~~v~~sp~g~~las~s~-D  128 (330)
T 2hes_X           63 SVAWRPHTSLLAAGSF-DSTVSIWAKEESADRTFEMDLLAI---I----EGH-----ENEVKGVAWSNDGYYLATCSR-D  128 (330)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEEC-------CCCEEEEE---E----C---------CEEEEEECTTSCEEEEEET-T
T ss_pred             EEEECCCCCEEEEEeC-CCcEEEEEcccCcCccccceeEEE---E----cCC-----CCcEEEEEECCCCCEEEEEeC-C
Confidence            3789999998877765 788888876321  1  1222221   1    111     034689999999999976664 7


Q ss_pred             CcEEEEEecCCC-CCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           80 GDIRQYNIEDPK-NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        80 ~sI~vf~i~d~~-~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +.|.+|++.... ..+.+..+.                             |..  +..+.++++|+|++|+.+.
T Consensus       129 ~~v~iwd~~~~~~~~~~~~~~~-----------------------------~h~--~~v~~v~~~p~~~~l~s~s  172 (330)
T 2hes_X          129 KSVWIWETDESGEEYECISVLQ-----------------------------EHS--QDVKHVIWHPSEALLASSS  172 (330)
T ss_dssp             SCEEEEECCTTCCCCEEEEEEC-----------------------------CCS--SCEEEEEECSSSSEEEEEE
T ss_pred             CEEEEEeccCCCCCeEEEEEec-----------------------------cCC--CceEEEEECCCCCEEEEEc
Confidence            899999994322 223322111                             110  1257889999999888774

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.51  E-value=0.0017  Score=60.33  Aligned_cols=100  Identities=14%  Similarity=0.103  Sum_probs=64.4

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+|+++....  +.+|.++... +++..  .   ++    .+..     .....+.+||||++|-... .++.|+
T Consensus        23 ~~~~spdg~~l~~~~--~~~v~l~~~~-~~~~~--~---~~----~~h~-----~~v~~~~~spdg~~lasg~-~d~~v~   84 (611)
T 1nr0_A           23 VLGNTPAGDKIQYCN--GTSVYTVPVG-SLTDT--E---IY----TEHS-----HQTTVAKTSPSGYYCASGD-VHGNVR   84 (611)
T ss_dssp             CCEECTTSSEEEEEE--TTEEEEEETT-CSSCC--E---EE----CCCS-----SCEEEEEECTTSSEEEEEE-TTSEEE
T ss_pred             EEeeCCCCCEEEeCC--CCEEEEecCC-CcccC--e---Ee----cCCC-----CceEEEEECCCCcEEEEEe-CCCCEE
Confidence            468999998776665  5688887653 33221  1   11    1210     3468999999999996555 478999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++.. ....+......                             .  .+.-+.+++||||++|.++.
T Consensus        85 lWd~~~-~~~~~~~~~~~-----------------------------~--~~~v~~v~fs~dg~~l~~~~  122 (611)
T 1nr0_A           85 IWDTTQ-TTHILKTTIPV-----------------------------F--SGPVKDISWDSESKRIAAVG  122 (611)
T ss_dssp             EEESSS-TTCCEEEEEEC-----------------------------S--SSCEEEEEECTTSCEEEEEE
T ss_pred             EeECCC-CcceeeEeecc-----------------------------c--CCceEEEEECCCCCEEEEEE
Confidence            999853 23333222211                             0  11257899999999998875

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.46  E-value=0.0014  Score=55.59  Aligned_cols=102  Identities=14%  Similarity=0.069  Sum_probs=64.7

Q ss_pred             eEEEcC--CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522            4 RFLHDP--SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD   81 (222)
Q Consensus         4 r~afhP--~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s   81 (222)
                      -++|||  +++++...+ .+.+|.+|... .++.  .+.....   ..        .....+.+||||++|.+.. ..+.
T Consensus       130 ~~~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~--~~~~~~~---~~--------~~i~~~~~~pdg~~lasg~-~dg~  193 (343)
T 3lrv_A          130 YMYGHNEVNTEYFIWAD-NRGTIGFQSYE-DDSQ--YIVHSAK---SD--------VEYSSGVLHKDSLLLALYS-PDGI  193 (343)
T ss_dssp             EEECCC---CCEEEEEE-TTCCEEEEESS-SSCE--EEEECCC---SS--------CCCCEEEECTTSCEEEEEC-TTSC
T ss_pred             EEEcCCCCCCCEEEEEe-CCCcEEEEECC-CCcE--EEEEecC---CC--------CceEEEEECCCCCEEEEEc-CCCE
Confidence            368899  888877666 48889988774 3333  2221111   01        2357899999999998765 4689


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |.+|++...... . ..+.                             +.+ .+..+.++++|+|++|+++.
T Consensus       194 i~iwd~~~~~~~-~-~~~~-----------------------------~~h-~~~v~~l~fs~~g~~l~s~~  233 (343)
T 3lrv_A          194 LDVYNLSSPDQA-S-SRFP-----------------------------VDE-EAKIKEVKFADNGYWMVVEC  233 (343)
T ss_dssp             EEEEESSCTTSC-C-EECC-----------------------------CCT-TSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCCCC-c-cEEe-----------------------------ccC-CCCEEEEEEeCCCCEEEEEe
Confidence            999999542211 0 1111                             100 11267899999999998886

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.46  E-value=0.00057  Score=62.17  Aligned_cols=86  Identities=23%  Similarity=0.286  Sum_probs=54.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCe
Q 027522           59 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ  138 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr  138 (222)
                      .+-.|.+|||||+|||+....+.|.+|+++.  .+++... .+   +         .                 +.|.|.
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~--~g~l~~~-~~---~---------~-----------------~~g~PD  269 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHA--NWTLTPL-RV---L---------S-----------------FDTLVD  269 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECT--TSCEEEE-EE---E---------E-----------------CSSEEE
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECC--CCcEecC-EE---E---------e-----------------CCCCCc
Confidence            4578999999999999999999999999954  2444211 11   0         0                 113399


Q ss_pred             eEEECC-CCCEEEEEeCCCCcccc-ccccccccCCcEEEEEEe
Q 027522          139 MIQLSL-DGKRLYVTNSLFSAWDC-QFYPELKEKGSHMLQIDV  179 (222)
Q Consensus       139 ~~~lsp-dGk~LyvaNsl~~~wd~-Q~yp~~~s~~~~i~~~dv  179 (222)
                      .|++++ +|+ ||||+. +..+.- .+-|+. ..+..++|+..
T Consensus       270 Gi~vD~e~G~-lwva~~-~~g~~v~~~~P~~-~~~s~v~rI~~  309 (355)
T 3sre_A          270 NISVDPVTGD-LWVGCH-PNGMRIFFYDAEN-PPGSEVLRIQD  309 (355)
T ss_dssp             EEEECTTTCC-EEEEEE-SCHHHHHSCCTTS-CCCEEEEEEEC
T ss_pred             eEEEeCCCCc-EEEEec-CCceEEEEECCCC-CCCCEEEEEEc
Confidence            999999 597 777541 111110 111221 34778888854

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.45  E-value=0.00064  Score=57.38  Aligned_cols=105  Identities=10%  Similarity=0.017  Sum_probs=63.2

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCC-eeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGS-WNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~-~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      -++|+|++++++...+ +.+|.+|.... +. +....  .+..  ..        .....+.+|||+++|+++.. .+.|
T Consensus        60 ~~~~s~~~~~l~s~s~-d~~v~vwd~~~-~~~~~~~~--~~~~--~~--------~~v~~~~~~~~~~~l~~~~~-d~~i  124 (377)
T 3dwl_C           60 CVDWAPKSNRIVTCSQ-DRNAYVYEKRP-DGTWKQTL--VLLR--LN--------RAATFVRWSPNEDKFAVGSG-ARVI  124 (377)
T ss_dssp             EEEECTTTCCEEEEET-TSSEEEC-------CCCCEE--ECCC--CS--------SCEEEEECCTTSSCCEEEES-SSCE
T ss_pred             EEEEeCCCCEEEEEeC-CCeEEEEEcCC-CCceeeee--Eecc--cC--------CceEEEEECCCCCEEEEEec-CCeE
Confidence            4689999998887775 78888887642 22 22221  1111  11        44689999999999988775 6789


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .+|++.......+...+.                             +. -.+....++++|||++|+++.
T Consensus       125 ~iwd~~~~~~~~~~~~~~-----------------------------~~-h~~~v~~~~~~~~~~~l~~~~  165 (377)
T 3dwl_C          125 SVCYFEQENDWWVSKHLK-----------------------------RP-LRSTILSLDWHPNNVLLAAGC  165 (377)
T ss_dssp             EECCC-----CCCCEEEC-----------------------------SS-CCSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCcccceeeeEee-----------------------------cc-cCCCeEEEEEcCCCCEEEEEe
Confidence            999885422111111111                             10 012267899999999998886

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.43  E-value=0.0063  Score=50.10  Aligned_cols=104  Identities=11%  Similarity=0.027  Sum_probs=64.7

Q ss_pred             eEEEcCC---C-CeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC----CCEEEEE
Q 027522            4 RFLHDPS---K-DIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD----DRFLYFS   75 (222)
Q Consensus         4 r~afhP~---g-~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD----grfLYvS   75 (222)
                      .++|+|+   + ..+++.+. +.+|.+|...........+....+.  ..        .....+.+|||    |++|+++
T Consensus        23 ~i~~~p~~~~~~~~~~~~~~-~~~v~vw~~~~~~~~~~~~~~~~~~--~~--------~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           23 GVQFNWHSKEGDPLVFATVG-SNRVTLYECHSQGEIRLLQSYVDAD--AD--------ENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEEECTTCCTTSCEEEEEEE-TTEEEEEEECGGGCEEEEEEEECSC--TT--------CCEEEEEEEECTTTCCEEEEEE
T ss_pred             EEEEecccCCCCceEEEECC-CCEEEEEEcCCCcEEEeeeeccccC--CC--------CcEEEEEeccCCCCCCCEEEEe
Confidence            4789984   4 44555554 5589999875333333333222111  11        44689999999    6677766


Q ss_pred             eCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECC-CCCEEEEEe
Q 027522           76 NWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSL-DGKRLYVTN  153 (222)
Q Consensus        76 nRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lsp-dGk~LyvaN  153 (222)
                      . ..+.|.+|++..   ++++..+..  .                         ..    ..+.++++| +|++|+++.
T Consensus        92 ~-~dg~i~v~d~~~---~~~~~~~~~--~-------------------------~~----~i~~~~~~~~~~~~l~s~~  135 (366)
T 3k26_A           92 G-SRGIIRIINPIT---MQCIKHYVG--H-------------------------GN----AINELKFHPRDPNLLLSVS  135 (366)
T ss_dssp             E-TTCEEEEECTTT---CCEEEEEES--C-------------------------CS----CEEEEEECSSCTTEEEEEE
T ss_pred             c-CCCEEEEEEchh---ceEeeeecC--C-------------------------CC----cEEEEEECCCCCCEEEEEe
Confidence            6 467999998743   445433331  0                         11    267899999 899888876

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.43  E-value=0.00086  Score=65.73  Aligned_cols=146  Identities=14%  Similarity=0.104  Sum_probs=91.2

Q ss_pred             EEcCCCCeEEEEeccCceEEEEEeCC-----CCCe-eEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC
Q 027522            6 LHDPSKDIGFVGCALASTMVRFSKTQ-----DGSW-NHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH   79 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV~~~~~d~-----~g~~-~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh   79 (222)
                      -.+|+|+|+|+..=|+.+|+++..++     ++++ ....++..-         ++..-.+-...+.++| +.|.|....
T Consensus       329 ~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae---------~e~GlGPlHt~Fd~~G-~aYTtlfid  398 (638)
T 3sbq_A          329 NTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE---------PELGLGPLHTTFDGRG-NAYTTLFID  398 (638)
T ss_dssp             EECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC---------CBCCSCEEEEEECSSS-EEEEEETTT
T ss_pred             eeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee---------ccCCCcccEEEECCCC-ceEeeeeec
Confidence            36899999999999999999998752     1221 111111111         1222456889999999 999999999


Q ss_pred             CcEEEEEecCC------CC-CeEEEEEEecceeecCCceeeeeCCCCCCCCCC-ccccCcccCCCCeeEEECCCCCEEEE
Q 027522           80 GDIRQYNIEDP------KN-PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDV-PEVQGHRLRGGPQMIQLSLDGKRLYV  151 (222)
Q Consensus        80 ~sI~vf~i~d~------~~-~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~-~~v~G~~~~ggPr~~~lspdGk~Lyv  151 (222)
                      ..|+.|+|+..      ++ -..++++.+.                  +||-. ....|.         +..||||||++
T Consensus       399 SqvvkWni~~a~~~~~g~~~~~v~~k~dv~------------------YqpGH~~~~~ge---------t~~~dGk~lv~  451 (638)
T 3sbq_A          399 SQVVKWNMEEAVRAYKGEKVNYIKQKLDVH------------------YQPGHLHASLCE---------TNEADGKWLVA  451 (638)
T ss_dssp             TEEEEEEHHHHHHHHTTCCCCCEEEEEECS------------------SCEEEEEETTTT---------STTCCSCEEEE
T ss_pred             ceEEEEeccHHHHHhcCccCCeeeeccccc------------------cCCcccccCCCc---------cCCCCccEEEE
Confidence            99999999642      11 1355666662                  33311 111222         34899999999


Q ss_pred             EeCCCCccccccc-cccccCCcEEEEEEeeCCCCCeeeccceeE
Q 027522          152 TNSLFSAWDCQFY-PELKEKGSHMLQIDVNSEKGGMAINPNFFV  194 (222)
Q Consensus       152 aNsl~~~wd~Q~y-p~~~s~~~~i~~~dvd~~~G~l~~~~~f~v  194 (222)
                      .|    +|-|..| |-+-..-..--.|||.  ..+|+|-.++.+
T Consensus       452 ln----K~skdrfl~vGpl~pen~QlidIs--GdkM~lv~D~P~  489 (638)
T 3sbq_A          452 LS----KFSKDRFLPVGPLHPENDQLIDIS--GDEMKLVHDGPT  489 (638)
T ss_dssp             EE----SCCTTSSCCCSSSCCEEEEEEECS--SSSCEEEEEEEE
T ss_pred             ec----ccccccCcCCCCCCCCcceeEecC--CCceEEEecCCC
Confidence            99    3333322 2222222333346663  337888877776

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.42  E-value=0.0064  Score=52.62  Aligned_cols=110  Identities=18%  Similarity=0.172  Sum_probs=68.6

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++....+ +.+|.+|... .|  ...++....+......     ......+.+||||++|++.. ..+.|.
T Consensus       254 ~v~~~p~~~~l~s~s~-D~~i~lwd~~-~~--~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~g~~l~~g~-~dg~i~  323 (380)
T 3iz6_a          254 SVKFFPDGQRFGTGSD-DGTCRLFDMR-TG--HQLQVYNREPDRNDNE-----LPIVTSVAFSISGRLLFAGY-SNGDCY  323 (380)
T ss_dssp             EEEECTTSSEEEEECS-SSCEEEEETT-TT--EEEEEECCCCSSSCCS-----SCSCSEEEECSSSSEEEEEC-TTSCEE
T ss_pred             EEEEecCCCeEEEEcC-CCeEEEEECC-CC--cEEEEecccccccccc-----cCceEEEEECCCCCEEEEEE-CCCCEE
Confidence            3689999998777665 8889998764 33  2233333222111110     12357899999999998765 478999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++.+..+..  .                       ..|.  .+.-..+++||||++|+.+.
T Consensus       324 vwd~~~---~~~~~~~~~--~-----------------------~~~h--~~~v~~l~~s~dg~~l~sgs  363 (380)
T 3iz6_a          324 VWDTLL---AEMVLNLGT--L-----------------------QNSH--EGRISCLGLSSDGSALCTGS  363 (380)
T ss_dssp             EEETTT---CCEEEEECC--S-----------------------CSSC--CCCCCEEEECSSSSEEEEEC
T ss_pred             EEECCC---CceEEEEec--c-----------------------cCCC--CCceEEEEECCCCCEEEEee
Confidence            998743   333222211  0                       0011  12267899999999987775

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.40  E-value=0.0064  Score=50.06  Aligned_cols=102  Identities=12%  Similarity=0.048  Sum_probs=65.6

Q ss_pred             eEEEcCC----CCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcC-CCCEEEEEeCC
Q 027522            4 RFLHDPS----KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISL-DDRFLYFSNWL   78 (222)
Q Consensus         4 r~afhP~----g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp-DgrfLYvSnRg   78 (222)
                      .++|+|+    ++++++.++ +++|.+|... +++.  .+.+...    .        .....|.+|| |+++|+++.. 
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~-dg~i~v~d~~-~~~~--~~~~~~~----~--------~~i~~~~~~~~~~~~l~s~~~-  136 (366)
T 3k26_A           74 TCAWTYDSNTSHPLLAVAGS-RGIIRIINPI-TMQC--IKHYVGH----G--------NAINELKFHPRDPNLLLSVSK-  136 (366)
T ss_dssp             EEEEEECTTTCCEEEEEEET-TCEEEEECTT-TCCE--EEEEESC----C--------SCEEEEEECSSCTTEEEEEET-
T ss_pred             EEEeccCCCCCCCEEEEecC-CCEEEEEEch-hceE--eeeecCC----C--------CcEEEEEECCCCCCEEEEEeC-
Confidence            4678888    556666665 7788888653 3322  2222211    1        4568999999 8898877765 


Q ss_pred             CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           79 HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        79 h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .+.|.+|++..   ++.+..+..-                          .+  -.+..+.++++|+|++|+++.
T Consensus       137 dg~i~iwd~~~---~~~~~~~~~~--------------------------~~--~~~~v~~~~~~~~~~~l~~~~  180 (366)
T 3k26_A          137 DHALRLWNIQT---DTLVAIFGGV--------------------------EG--HRDEVLSADYDLLGEKIMSCG  180 (366)
T ss_dssp             TSCEEEEETTT---TEEEEEECST--------------------------TS--CSSCEEEEEECTTSSEEEEEE
T ss_pred             CCeEEEEEeec---CeEEEEeccc--------------------------cc--ccCceeEEEECCCCCEEEEec
Confidence            77899999843   4443222110                          00  012278999999999999887

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.39  E-value=0.0013  Score=61.23  Aligned_cols=70  Identities=9%  Similarity=0.105  Sum_probs=44.6

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEE-EEcCCCCEEEEEeCCCC--
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDF-LISLDDRFLYFSNWLHG--   80 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI-~iSpDgrfLYvSnRgh~--   80 (222)
                      -++|+|+|+++|+.++ +.++.++.++.+|+   .+  .+...   .       .....+ .+||||++||++...++  
T Consensus       341 ~~~~spdg~~~~~~~~-~g~~~l~~~~~~~~---~~--~l~~~---~-------~~v~~~~~~s~dg~~l~~~~~~~~~~  404 (741)
T 2ecf_A          341 SLRFLDDGSILWSSER-TGFQHLYRIDSKGK---AA--ALTHG---N-------WSVDELLAVDEKAGLAYFRAGIESAR  404 (741)
T ss_dssp             CCEECTTSCEEEEECT-TSSCEEEEECSSSC---EE--ESCCS---S-------SCEEEEEEEETTTTEEEEEECSSCTT
T ss_pred             ceEECCCCeEEEEecC-CCccEEEEEcCCCC---ee--eeeec---c-------eEEEeEeEEeCCCCEEEEEEeCCCCc
Confidence            3689999996665544 66666666654444   12  22211   1       223455 59999999988776555  


Q ss_pred             cEEEEEecC
Q 027522           81 DIRQYNIED   89 (222)
Q Consensus        81 sI~vf~i~d   89 (222)
                      .+.+|+++.
T Consensus       405 ~~~l~~~~~  413 (741)
T 2ecf_A          405 ESQIYAVPL  413 (741)
T ss_dssp             CBEEEEEET
T ss_pred             eEEEEEEEc
Confidence            888999853

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.38  E-value=0.0011  Score=59.83  Aligned_cols=107  Identities=11%  Similarity=-0.010  Sum_probs=67.3

Q ss_pred             eEEEcCCCCeEEE---EeccCceEEEEEeCC--CCCe---eEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEE
Q 027522            4 RFLHDPSKDIGFV---GCALASTMVRFSKTQ--DGSW---NHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS   75 (222)
Q Consensus         4 r~afhP~g~~aYv---v~ELsstV~~~~~d~--~g~~---~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvS   75 (222)
                      -++|+|+|++++|   .+.-+.+|.+|....  .+..   .....+.+.... .        ....+|..||++..+++|
T Consensus        97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h-~--------~~V~~v~~~p~~~~~las  167 (434)
T 2oit_A           97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA-G--------GMVIDMKWNPTVPSMVAV  167 (434)
T ss_dssp             EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG-G--------GSEEEEEECSSCTTEEEE
T ss_pred             EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCC-C--------CceEEEEECCCCCCEEEE
Confidence            4689999999998   556688888886531  1111   111122222111 1        346899999996555566


Q ss_pred             eCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           76 NWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        76 nRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +-..+.|.+|++..   ++.+  +...+                         ....    .+.+++||||++|++++
T Consensus       168 ~s~Dg~v~iwD~~~---~~~~--~~~~~-------------------------~~~~----v~~v~wspdg~~lasgs  211 (434)
T 2oit_A          168 CLADGSIAVLQVTE---TVKV--CATLP-------------------------STVA----VTSVCWSPKGKQLAVGK  211 (434)
T ss_dssp             EETTSCEEEEEESS---SEEE--EEEEC-------------------------GGGC----EEEEEECTTSSCEEEEE
T ss_pred             EECCCeEEEEEcCC---Ccce--eeccC-------------------------CCCc----eeEEEEcCCCCEEEEEc
Confidence            66789999999954   2221  11100                         0122    78899999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.38  E-value=0.0077  Score=51.14  Aligned_cols=101  Identities=13%  Similarity=0.043  Sum_probs=66.2

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|+++++.+..+ +.+|.+|.... +.  .....  ....        .......+.+||||++|.++. ..+.|.
T Consensus       231 ~v~~~p~~~~l~s~s~-d~~v~iwd~~~-~~--~~~~~--~~~~--------~~~~v~~~~~s~~g~~l~~g~-~d~~i~  295 (340)
T 1got_B          231 AICFFPNGNAFATGSD-DATCRLFDLRA-DQ--ELMTY--SHDN--------IICGITSVSFSKSGRLLLAGY-DDFNCN  295 (340)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEETTT-TE--EEEEE--CCTT--------CCSCEEEEEECTTSSEEEEEE-TTSEEE
T ss_pred             EEEEcCCCCEEEEEcC-CCcEEEEECCC-Cc--EEEEE--ccCC--------cccceEEEEECCCCCEEEEEC-CCCeEE
Confidence            3689999998887765 78898887642 21  11221  1111        013468899999999998776 467899


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++.+..+..                             ..  +.-..++++|||++|+.+.
T Consensus       296 vwd~~~---~~~~~~~~~-----------------------------h~--~~v~~~~~s~dg~~l~s~s  331 (340)
T 1got_B          296 VWDALK---ADRAGVLAG-----------------------------HD--NRVSCLGVTDDGMAVATGS  331 (340)
T ss_dssp             EEETTT---CCEEEEEEC-----------------------------CS--SCEEEEEECTTSSCEEEEE
T ss_pred             EEEccc---CcEeeEeec-----------------------------CC--CcEEEEEEcCCCCEEEEEc
Confidence            999843   333332221                             10  1156799999999988776

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.37  E-value=0.0052  Score=54.57  Aligned_cols=63  Identities=10%  Similarity=0.005  Sum_probs=41.9

Q ss_pred             EEEcCC---CCeEEEEecc---C----ceEEEEEeCC-CCCeeEEEEE-EecCcccccccCCCCCCceeEEEEcCCCCEE
Q 027522            5 FLHDPS---KDIGFVGCAL---A----STMVRFSKTQ-DGSWNHEVAI-SVKSLKVQNWILPEMPGLITDFLISLDDRFL   72 (222)
Q Consensus         5 ~afhP~---g~~aYvv~EL---s----stV~~~~~d~-~g~~~~~q~i-s~~p~~~~g~~~~~~~~~~adI~iSpDgrfL   72 (222)
                      ++|||+   +.++||.+.-   +    +.|.++..+. ++.+...+++ +-.|..  +.      ..+..|.++|||+ |
T Consensus        78 ia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~--~~------h~~~~l~~~pDG~-L  148 (354)
T 3a9g_A           78 LALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGA--YI------HNGGRIRFGPDGM-L  148 (354)
T ss_dssp             EEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECC--SS------CCCCCEEECTTSC-E
T ss_pred             EEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCC--CC------cCCceEEECCCCc-E
Confidence            689998   8899998763   3    6799998753 2355544443 312211  11      2357899999995 9


Q ss_pred             EEEe
Q 027522           73 YFSN   76 (222)
Q Consensus        73 YvSn   76 (222)
                      |++.
T Consensus       149 yvt~  152 (354)
T 3a9g_A          149 YITT  152 (354)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            9996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.36  E-value=0.0068  Score=52.18  Aligned_cols=100  Identities=16%  Similarity=0.137  Sum_probs=65.0

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+++++.+.+. +.+|.+|.... +.  ......  ....        ......+.+||||++|+++. ..+.|.+
T Consensus       246 v~~~p~~~~l~s~s~-D~~v~lwd~~~-~~--~~~~~~--~~~~--------~~~~~~~~~s~~g~~l~~g~-~d~~i~v  310 (354)
T 2pbi_B          246 VRYYPSGDAFASGSD-DATCRLYDLRA-DR--EVAIYS--KESI--------IFGASSVDFSLSGRLLFAGY-NDYTINV  310 (354)
T ss_dssp             EEECTTSSEEEEEET-TSCEEEEETTT-TE--EEEEEC--CTTC--------CSCEEEEEECTTSSEEEEEE-TTSCEEE
T ss_pred             EEEeCCCCEEEEEeC-CCeEEEEECCC-Cc--EEEEEc--CCCc--------ccceeEEEEeCCCCEEEEEE-CCCcEEE
Confidence            689999998777664 88898887642 21  111111  1110        12357899999999998876 4679999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++..   ++.+..+.  |                           .  .+....+++||||++|..+.
T Consensus       311 wd~~~---~~~~~~l~--~---------------------------h--~~~v~~l~~spdg~~l~sgs  345 (354)
T 2pbi_B          311 WDVLK---GSRVSILF--G---------------------------H--ENRVSTLRVSPDGTAFCSGS  345 (354)
T ss_dssp             EETTT---CSEEEEEC--C---------------------------C--SSCEEEEEECTTSSCEEEEE
T ss_pred             EECCC---CceEEEEE--C---------------------------C--CCcEEEEEECCCCCEEEEEc
Confidence            99843   33332221  1                           1  01257899999999988876

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.34  E-value=0.0045  Score=51.78  Aligned_cols=82  Identities=12%  Similarity=0.117  Sum_probs=50.0

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCC-CCeeEEEEEEecCcccc---cccCCCCCCceeEEEEcCCCCEEEEEeCCC
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQD-GSWNHEVAISVKSLKVQ---NWILPEMPGLITDFLISLDDRFLYFSNWLH   79 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~-g~~~~~q~is~~p~~~~---g~~~~~~~~~~adI~iSpDgrfLYvSnRgh   79 (222)
                      -++|+|++++.++.+-.+++|.+|..... ....   .+........   -.....-......|.+||||++|+++. ..
T Consensus       191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d  266 (408)
T 4a11_B          191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLI---TLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG-TD  266 (408)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSE---ECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE-TT
T ss_pred             EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccc---cccccccccceeeccccccccCceeEEEEcCCCCEEEEec-CC
Confidence            47899999986666666888999876421 1111   1100000000   000011124578999999999998776 46


Q ss_pred             CcEEEEEecC
Q 027522           80 GDIRQYNIED   89 (222)
Q Consensus        80 ~sI~vf~i~d   89 (222)
                      +.|.+|++..
T Consensus       267 g~i~vwd~~~  276 (408)
T 4a11_B          267 NRMRLWNSSN  276 (408)
T ss_dssp             SCEEEEETTT
T ss_pred             CeEEEEECCC
Confidence            7899999854

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.33  E-value=0.0048  Score=52.94  Aligned_cols=75  Identities=9%  Similarity=0.092  Sum_probs=51.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCC-CEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDD-RFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDg-rfLYvSnRgh~sI~   83 (222)
                      ++|+|+++++... . +.+|.+|.....  -...+.+.+.+..+.+.     ......+.+|||+ ++|+++. ..+.|.
T Consensus       183 ~~~~~~~~~l~s~-~-d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~s~~-~dg~i~  252 (447)
T 3dw8_B          183 ISINSDYETYLSA-D-DLRINLWHLEIT--DRSFNIVDIKPANMEEL-----TEVITAAEFHPNSCNTFVYSS-SKGTIR  252 (447)
T ss_dssp             EEECTTSSEEEEE-C-SSEEEEEETTEE--EEEEEEEECCCSSGGGC-----CCCEEEEEECSSCTTEEEEEE-TTSCEE
T ss_pred             EEEcCCCCEEEEe-C-CCeEEEEECCCC--Cceeeeeeccccccccc-----CcceEEEEECCCCCcEEEEEe-CCCeEE
Confidence            6799999988876 4 899999976421  22334444444333332     2557899999999 7776665 478999


Q ss_pred             EEEecC
Q 027522           84 QYNIED   89 (222)
Q Consensus        84 vf~i~d   89 (222)
                      +|++..
T Consensus       253 iwd~~~  258 (447)
T 3dw8_B          253 LCDMRA  258 (447)
T ss_dssp             EEETTT
T ss_pred             EEECcC
Confidence            999854

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.33  E-value=0.002  Score=55.29  Aligned_cols=82  Identities=9%  Similarity=0.106  Sum_probs=48.3

Q ss_pred             eEEEcCCC-CeEEEEeccCceEEEEEeCCCCCeeE--EEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            4 RFLHDPSK-DIGFVGCALASTMVRFSKTQDGSWNH--EVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         4 r~afhP~g-~~aYvv~ELsstV~~~~~d~~g~~~~--~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      -++|+|++ +++++.++ +++|.+|... +++...  .+.+...........+.........|.+||||++|.++..  +
T Consensus       231 ~~~~~p~~~~~l~s~~~-dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~  306 (447)
T 3dw8_B          231 AAEFHPNSCNTFVYSSS-KGTIRLCDMR-ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--L  306 (447)
T ss_dssp             EEEECSSCTTEEEEEET-TSCEEEEETT-TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--S
T ss_pred             EEEECCCCCcEEEEEeC-CCeEEEEECc-CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--C
Confidence            47899999 66666655 7889988764 232200  1122111000000000000025689999999999998876  8


Q ss_pred             cEEEEEecC
Q 027522           81 DIRQYNIED   89 (222)
Q Consensus        81 sI~vf~i~d   89 (222)
                      .|.+|++..
T Consensus       307 ~v~iwd~~~  315 (447)
T 3dw8_B          307 SVKVWDLNM  315 (447)
T ss_dssp             EEEEEETTC
T ss_pred             eEEEEeCCC
Confidence            999999953

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.31  E-value=0.014  Score=53.58  Aligned_cols=115  Identities=16%  Similarity=0.164  Sum_probs=76.4

Q ss_pred             cCC-CC-eEEEEeccCceEEEEEe--CCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            8 DPS-KD-IGFVGCALASTMVRFSK--TQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         8 hP~-g~-~aYvv~ELsstV~~~~~--d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      +|. ++ ++||.++- ..+..|..  +.+|+.+.+.+-++.-           ++.+-.|.+.+...+||++....+ |+
T Consensus       138 ~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~l-----------gsq~EgcvvDd~~g~Lyv~eEd~G-Iw  204 (355)
T 3amr_A          138 SQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKM-----------NSQTEGMAADDEYGRLYIAEEDEA-IW  204 (355)
T ss_dssp             CTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEEC-----------SSCEEEEEEETTTTEEEEEETTTE-EE
T ss_pred             cCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecC-----------CCCcceEEEcCCCCeEEEecccce-EE
Confidence            664 44 79999985 67777654  3466666655444321           134578999999999999999866 88


Q ss_pred             EEEecCCC---CCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEE--CCCCC-EEEEEeCCCC
Q 027522           84 QYNIEDPK---NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL--SLDGK-RLYVTNSLFS  157 (222)
Q Consensus        84 vf~i~d~~---~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~l--spdGk-~LyvaNsl~~  157 (222)
                      .|+.+ |.   +++++..+.                             +.++...|--|+|  .++|+ ||+|+|    
T Consensus       205 ~~da~-p~~~~~~~~v~~~~-----------------------------~g~l~aDvEGLai~~~~~g~gyLivSs----  250 (355)
T 3amr_A          205 KFSAE-PDGGSNGTVIDRAD-----------------------------GRHLTRDIEGLTIYYAADGKGYLMASS----  250 (355)
T ss_dssp             EEECS-TTSCSCCEEEEEBS-----------------------------SSSBCSCEEEEEEEECGGGCEEEEEEE----
T ss_pred             EEeCC-cCCCCCceEEEEec-----------------------------CCccccCcceEEEEecCCCCEEEEEEc----
Confidence            88763 33   355654332                             2233334778888  67888 899999    


Q ss_pred             ccccccccccccCCcEEEEEEee
Q 027522          158 AWDCQFYPELKEKGSHMLQIDVN  180 (222)
Q Consensus       158 ~wd~Q~yp~~~s~~~~i~~~dvd  180 (222)
                          |.       +.++..+|..
T Consensus       251 ----QG-------~~s~~Vydr~  262 (355)
T 3amr_A          251 ----QG-------NSSYAIYDRQ  262 (355)
T ss_dssp             ----GG-------GTEEEEEESS
T ss_pred             ----CC-------CCEEEEEECC
Confidence                74       4566666653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.31  E-value=0.0035  Score=55.11  Aligned_cols=99  Identities=10%  Similarity=0.219  Sum_probs=66.5

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|||+++++....+ +.+|.+|... +|+..  +++       .+.     .....+|.+||||++|..+. .++.|.
T Consensus       113 ~~~~~p~~~~l~s~s~-Dg~i~vwd~~-~~~~~--~~l-------~~h-----~~~V~~v~~~~~~~~l~sgs-~D~~i~  175 (410)
T 1vyh_C          113 RVIFHPVFSVMVSASE-DATIKVWDYE-TGDFE--RTL-------KGH-----TDSVQDISFDHSGKLLASCS-ADMTIK  175 (410)
T ss_dssp             EEEECSSSSEEEEEES-SSCEEEEETT-TCCCC--EEE-------CCC-----SSCEEEEEECTTSSEEEEEE-TTSCCC
T ss_pred             EEEEcCCCCEEEEEeC-CCeEEEEECC-CCcEE--EEE-------ecc-----CCcEEEEEEcCCCCEEEEEe-CCCeEE
Confidence            5789999998887776 8899999874 34332  221       111     03468999999999887665 578999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   .+.+..+.                             |..  +.-..++++|+|++|+.+.
T Consensus       176 iwd~~~---~~~~~~~~-----------------------------~h~--~~V~~v~~~p~~~~l~s~s  211 (410)
T 1vyh_C          176 LWDFQG---FECIRTMH-----------------------------GHD--HNVSSVSIMPNGDHIVSAS  211 (410)
T ss_dssp             EEETTS---SCEEECCC-----------------------------CCS--SCEEEEEECSSSSEEEEEE
T ss_pred             EEeCCC---CceeEEEc-----------------------------CCC--CCEEEEEEeCCCCEEEEEe
Confidence            999843   33321111                             110  1256789999999998775

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.29  E-value=0.0094  Score=50.77  Aligned_cols=76  Identities=17%  Similarity=0.160  Sum_probs=52.0

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++++..+ +.+|.+|... +++.  .+.+.       +.     ......+.+|||+++|+.+.. .+.|.
T Consensus       144 ~~~~~~~~~~l~s~s~-d~~i~iwd~~-~~~~--~~~~~-------~h-----~~~v~~~~~~~~~~~l~s~~~-d~~v~  206 (420)
T 3vl1_A          144 KLKFFPSGEALISSSQ-DMQLKIWSVK-DGSN--PRTLI-------GH-----RATVTDIAIIDRGRNVLSASL-DGTIR  206 (420)
T ss_dssp             EEEECTTSSEEEEEET-TSEEEEEETT-TCCC--CEEEE-------CC-----SSCEEEEEEETTTTEEEEEET-TSCEE
T ss_pred             EEEECCCCCEEEEEeC-CCeEEEEeCC-CCcC--ceEEc-------CC-----CCcEEEEEEcCCCCEEEEEcC-CCcEE
Confidence            4789999998887775 7889888764 3322  12221       11     144689999999999987664 67899


Q ss_pred             EEEecCCCCCeEEEEE
Q 027522           84 QYNIEDPKNPVLTGQI   99 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v   99 (222)
                      +|++..   ++.+..+
T Consensus       207 iwd~~~---~~~~~~~  219 (420)
T 3vl1_A          207 LWECGT---GTTIHTF  219 (420)
T ss_dssp             EEETTT---TEEEEEE
T ss_pred             EeECCC---CceeEEe
Confidence            999843   4454443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.27  E-value=0.023  Score=47.43  Aligned_cols=68  Identities=15%  Similarity=0.151  Sum_probs=48.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+++++.+..+ +.+|.+|... +|+.  ...+.       +.     ......|.+|||+++|..+. ..+.|.+
T Consensus        61 ~~~~~~~~~l~s~s~-d~~i~vwd~~-~~~~--~~~~~-------~h-----~~~v~~~~~~~~~~~l~sgs-~D~~v~l  123 (304)
T 2ynn_A           61 GKFIARKNWIIVGSD-DFRIRVFNYN-TGEK--VVDFE-------AH-----PDYIRSIAVHPTKPYVLSGS-DDLTVKL  123 (304)
T ss_dssp             EEEEGGGTEEEEEET-TSEEEEEETT-TCCE--EEEEE-------CC-----SSCEEEEEECSSSSEEEEEE-TTSCEEE
T ss_pred             EEEeCCCCEEEEECC-CCEEEEEECC-CCcE--EEEEe-------CC-----CCcEEEEEEcCCCCEEEEEC-CCCeEEE
Confidence            578999999888776 7889888764 3432  22221       11     14468999999999997665 5789999


Q ss_pred             EEecC
Q 027522           85 YNIED   89 (222)
Q Consensus        85 f~i~d   89 (222)
                      |++..
T Consensus       124 Wd~~~  128 (304)
T 2ynn_A          124 WNWEN  128 (304)
T ss_dssp             EEGGG
T ss_pred             EECCC
Confidence            99954

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.27  E-value=0.0019  Score=55.89  Aligned_cols=100  Identities=12%  Similarity=0.022  Sum_probs=62.2

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|++...++..-.+.+|.+|... +++.  .+.....    .        .....|.+|||++.+.+|.-..+.|+
T Consensus       231 ~v~~sp~~~~~la~g~~d~~i~~wd~~-~~~~--~~~~~~~----~--------~~v~~l~~sp~~~~~lasgs~D~~i~  295 (357)
T 4g56_B          231 SVTWHPEKDDTFACGDETGNVSLVNIK-NPDS--AQTSAVH----S--------QNITGLAYSYHSSPFLASISEDCTVA  295 (357)
T ss_dssp             EEEECTTSTTEEEEEESSSCEEEEESS-CGGG--CEEECCC----S--------SCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred             chhhhhcccceEEEeecccceeEEECC-CCcE--eEEEecc----c--------eeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            478999877666655557888888763 3322  1222111    1        34688999999864445554578999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECC-CCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSL-DGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lsp-dGk~LyvaN  153 (222)
                      +|++.   .++++...   |.                             .+.-+.+++|| ||++|+.+.
T Consensus       296 iwd~~---~~~~~~~~---~H-----------------------------~~~V~~vafsP~d~~~l~s~s  331 (357)
T 4g56_B          296 VLDAD---FSEVFRDL---SH-----------------------------RDFVTGVAWSPLDHSKFTTVG  331 (357)
T ss_dssp             EECTT---SCEEEEEC---CC-----------------------------SSCEEEEEECSSSTTEEEEEE
T ss_pred             EEECC---CCcEeEEC---CC-----------------------------CCCEEEEEEeCCCCCEEEEEc
Confidence            99874   34553211   11                             01257899998 788876665

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.27  E-value=0.00023  Score=70.38  Aligned_cols=105  Identities=15%  Similarity=0.170  Sum_probs=65.6

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCccc-ccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV-QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~-~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      -++|+|+|+++.+.++ +++|.+|... +|+..  ..  +.+... .+.  ..-....+.+.+||||++|.+++   +.|
T Consensus      1132 ~~~~s~dg~~lat~~~-dg~i~vwd~~-~~~~~--~~--~~~~~~~~~~--~~~~~~v~~l~fs~dg~~l~s~~---g~v 1200 (1249)
T 3sfz_A         1132 CSAFSLDGILLATGDD-NGEIRIWNVS-DGQLL--HS--CAPISVEEGT--ATHGGWVTDVCFSPDSKTLVSAG---GYL 1200 (1249)
T ss_dssp             EEEECSSSSEEEEEET-TSCCCEEESS-SSCCC--CC--CCCCC---------CCSCCCEEEECTTSSCEEEES---SSE
T ss_pred             EEEECCCCCEEEEEeC-CCEEEEEECC-CCceE--EE--eccccccccc--cccCceEEEEEECCCCCEEEECC---CeE
Confidence            4789999999988876 6778888764 33221  11  100000 000  00114468999999999998775   799


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .+|++..   ++.+..+..                           .+..    ...+++||||++|+++.
T Consensus      1201 ~vwd~~~---g~~~~~~~~---------------------------~~~~----i~~~~~s~dg~~l~~~~ 1237 (1249)
T 3sfz_A         1201 KWWNVAT---GDSSQTFYT---------------------------NGTN----LKKIHVSPDFRTYVTVD 1237 (1249)
T ss_dssp             EEBCSSS---CBCCCCCCC---------------------------SSCC----CCCCEECSSSCCEEEEC
T ss_pred             EEEECCC---Cceeeeeec---------------------------cCCc----ccEEEECCCCCEEEEec
Confidence            9998843   322111111                           0122    57899999999999887

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.27  E-value=0.003  Score=56.30  Aligned_cols=69  Identities=16%  Similarity=0.150  Sum_probs=46.7

Q ss_pred             eEEEcC--CCCeEEEEeccCceEEEEEeCCCC------CeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEE
Q 027522            4 RFLHDP--SKDIGFVGCALASTMVRFSKTQDG------SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS   75 (222)
Q Consensus         4 r~afhP--~g~~aYvv~ELsstV~~~~~d~~g------~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvS   75 (222)
                      -++|+|  +++++++.++ +.+|.+|... ++      .......+...    .        .....+.+||||++|+++
T Consensus        69 ~~~~sp~~~~~~l~s~~~-dg~v~vw~~~-~~~~~~~~~~~~~~~~~~~----~--------~~v~~~~~s~~~~~l~~~  134 (615)
T 1pgu_A           69 TVKFSPIKGSQYLCSGDE-SGKVIVWGWT-FDKESNSVEVNVKSEFQVL----A--------GPISDISWDFEGRRLCVV  134 (615)
T ss_dssp             EEEECSSTTCCEEEEEET-TSEEEEEEEE-EEGGGTEEEEEEEEEEECC----S--------SCEEEEEECTTSSEEEEE
T ss_pred             EEEECcCCCCCEEEEecC-CCEEEEEeCC-CCcccccccccccchhhcc----c--------ccEEEEEEeCCCCEEEEe
Confidence            478999  9999988877 7888888763 12      12222222211    1        346899999999999998


Q ss_pred             eCCC---CcEEEEE
Q 027522           76 NWLH---GDIRQYN   86 (222)
Q Consensus        76 nRgh---~sI~vf~   86 (222)
                      ....   +.|.+|+
T Consensus       135 ~~~~~~~~~v~~~d  148 (615)
T 1pgu_A          135 GEGRDNFGVFISWD  148 (615)
T ss_dssp             ECCSSCSEEEEETT
T ss_pred             ccCCCCccEEEEEE
Confidence            8653   4566664

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.26  E-value=0.014  Score=49.17  Aligned_cols=105  Identities=9%  Similarity=0.155  Sum_probs=64.7

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|++....+.+-.+.+|.+|..............++     .+..     ....++.+||||++|..+.+ ++.|+
T Consensus        22 ~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-----~~h~-----~~v~~~~~s~dg~~l~s~s~-D~~v~   90 (319)
T 3frx_A           22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-----KGHS-----HIVQDCTLTADGAYALSASW-DKTLR   90 (319)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-----ECCS-----SCEEEEEECTTSSEEEEEET-TSEEE
T ss_pred             EEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-----eCCc-----ccEEEEEECCCCCEEEEEeC-CCEEE
Confidence            3679997744444444588998887642211111111111     2221     34689999999999987764 68999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++.+..+..                             ..  +.-..++++|+|++|+.+.
T Consensus        91 ~wd~~~---~~~~~~~~~-----------------------------h~--~~v~~~~~~~~~~~l~s~s  126 (319)
T 3frx_A           91 LWDVAT---GETYQRFVG-----------------------------HK--SDVMSVDIDKKASMIISGS  126 (319)
T ss_dssp             EEETTT---TEEEEEEEC-----------------------------CS--SCEEEEEECTTSCEEEEEE
T ss_pred             EEECCC---CCeeEEEcc-----------------------------CC--CcEEEEEEcCCCCEEEEEe
Confidence            999843   444333221                             10  1156789999999888775

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.26  E-value=0.0041  Score=51.21  Aligned_cols=81  Identities=14%  Similarity=0.158  Sum_probs=51.6

Q ss_pred             eEEEcC-CCCeEEEEeccCceEEEEEeCCCC-C--eeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC
Q 027522            4 RFLHDP-SKDIGFVGCALASTMVRFSKTQDG-S--WNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH   79 (222)
Q Consensus         4 r~afhP-~g~~aYvv~ELsstV~~~~~d~~g-~--~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh   79 (222)
                      .++|+| +++++++.++ +.+|.++.++..+ .  .+....+........+.   ........|.+|||+++|+++. ..
T Consensus       198 ~i~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~-~d  272 (342)
T 1yfq_A          198 DVALLPKEQEGYACSSI-DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT---NLAYPVNSIEFSPRHKFLYTAG-SD  272 (342)
T ss_dssp             EEEECSGGGCEEEEEET-TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC---SSCCCEEEEEECTTTCCEEEEE-TT
T ss_pred             EEEECCCCCCEEEEEec-CCcEEEEEEcCCCcccccccceeeeccccccccc---ccceeEEEEEEcCCCCEEEEec-CC
Confidence            468999 9999888887 8889998876431 0  11122222211100110   0013578999999999998776 57


Q ss_pred             CcEEEEEecC
Q 027522           80 GDIRQYNIED   89 (222)
Q Consensus        80 ~sI~vf~i~d   89 (222)
                      +.|.+|++..
T Consensus       273 g~i~vwd~~~  282 (342)
T 1yfq_A          273 GIISCWNLQT  282 (342)
T ss_dssp             SCEEEEETTT
T ss_pred             ceEEEEcCcc
Confidence            8999999843

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.25  E-value=0.0018  Score=64.18  Aligned_cols=100  Identities=20%  Similarity=0.225  Sum_probs=64.3

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC-----
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL-----   78 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg-----   78 (222)
                      .++|+|+|+++++.+. ..+|.++..+ +|+..  +...-.    .        .....+.+||||++|.++...     
T Consensus       383 ~~~~SpDG~~la~~~~-~~~v~~~d~~-tg~~~--~~~~~~----~--------~~v~~~~~SpDG~~la~~~~~~~~~~  446 (1045)
T 1k32_A          383 AMGVDRNGKFAVVAND-RFEIMTVDLE-TGKPT--VIERSR----E--------AMITDFTISDNSRFIAYGFPLKHGET  446 (1045)
T ss_dssp             EEEECTTSSEEEEEET-TSEEEEEETT-TCCEE--EEEECS----S--------SCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred             eeEECCCCCEEEEECC-CCeEEEEECC-CCceE--EeccCC----C--------CCccceEECCCCCeEEEEecCccccc
Confidence            4789999999887765 5688888763 45432  222111    1        224678999999998665542     


Q ss_pred             ----CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           79 ----HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        79 ----h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                          ...|.+|+++.   +++ ..+..                           .+..    +..+++||||++||++..
T Consensus       447 ~~~~~~~i~l~d~~~---g~~-~~l~~---------------------------~~~~----~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          447 DGYVMQAIHVYDMEG---RKI-FAATT---------------------------ENSH----DYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             CSCCEEEEEEEETTT---TEE-EECSC---------------------------SSSB----EEEEEECTTSCEEEEEES
T ss_pred             cCCCCCeEEEEECCC---CcE-EEeeC---------------------------CCcc----cCCceEcCCCCEEEEEec
Confidence                35899998743   332 11111                           0122    567899999999998864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.005  Score=52.15  Aligned_cols=77  Identities=6%  Similarity=-0.031  Sum_probs=47.8

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC---
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG---   80 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~---   80 (222)
                      -++|+|++...++.+--+.+|.+|... .+  +....+..... ..+.     ......|.+|||++.++++.-..+   
T Consensus       170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~--~~~~~~~~~~~-~~~~-----~~~v~~~~~~~~~~~~l~~~~~d~~~~  240 (416)
T 2pm9_A          170 SLAWNQSLAHVFASAGSSNFASIWDLK-AK--KEVIHLSYTSP-NSGI-----KQQLSVVEWHPKNSTRVATATGSDNDP  240 (416)
T ss_dssp             EEEECSSCTTEEEEESSSSCEEEEETT-TT--EEEEEECCCCC-SSCC-----CCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred             EEEeCCCCCcEEEEEcCCCCEEEEECC-CC--CcceEEecccc-cccc-----CCceEEEEECCCCCCEEEEEECCCCCc
Confidence            368999965555555568889999764 23  22333322210 0010     145789999999965555554555   


Q ss_pred             cEEEEEecC
Q 027522           81 DIRQYNIED   89 (222)
Q Consensus        81 sI~vf~i~d   89 (222)
                      .|.+|++..
T Consensus       241 ~i~~~d~~~  249 (416)
T 2pm9_A          241 SILIWDLRN  249 (416)
T ss_dssp             CCCEEETTS
T ss_pred             eEEEEeCCC
Confidence            999999954

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.24  E-value=0.0091  Score=50.88  Aligned_cols=97  Identities=8%  Similarity=0.011  Sum_probs=64.1

Q ss_pred             EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522            6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY   85 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf   85 (222)
                      +|+|+++++.+... +++|.+|... .+.     ...+.... .        .....|.+|||+++|+++.. .+.|.+|
T Consensus       104 ~~~~~~~~l~~~~~-dg~i~iwd~~-~~~-----~~~~~~~h-~--------~~v~~~~~~~~~~~l~s~s~-d~~i~iw  166 (420)
T 3vl1_A          104 TAKLQMRRFILGTT-EGDIKVLDSN-FNL-----QREIDQAH-V--------SEITKLKFFPSGEALISSSQ-DMQLKIW  166 (420)
T ss_dssp             EECSSSCEEEEEET-TSCEEEECTT-SCE-----EEEETTSS-S--------SCEEEEEECTTSSEEEEEET-TSEEEEE
T ss_pred             EEecCCCEEEEEEC-CCCEEEEeCC-Ccc-----eeeecccc-c--------CccEEEEECCCCCEEEEEeC-CCeEEEE
Confidence            68999998777765 7788888653 221     12222111 1        45789999999999987764 6789999


Q ss_pred             EecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           86 NIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        86 ~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ++..   ++.+..+..  .                         .    +....++++|||++|+.+.
T Consensus       167 d~~~---~~~~~~~~~--h-------------------------~----~~v~~~~~~~~~~~l~s~~  200 (420)
T 3vl1_A          167 SVKD---GSNPRTLIG--H-------------------------R----ATVTDIAIIDRGRNVLSAS  200 (420)
T ss_dssp             ETTT---CCCCEEEEC--C-------------------------S----SCEEEEEEETTTTEEEEEE
T ss_pred             eCCC---CcCceEEcC--C-------------------------C----CcEEEEEEcCCCCEEEEEc
Confidence            9954   222222221  0                         1    1257899999999998876

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.23  E-value=0.012  Score=49.54  Aligned_cols=111  Identities=8%  Similarity=-0.009  Sum_probs=61.9

Q ss_pred             eEEEc----CCCCe-EEEEeccCceEEEEEeCC------CCCee--EEEEEEe--c-CcccccccCCCCCCceeEEEEcC
Q 027522            4 RFLHD----PSKDI-GFVGCALASTMVRFSKTQ------DGSWN--HEVAISV--K-SLKVQNWILPEMPGLITDFLISL   67 (222)
Q Consensus         4 r~afh----P~g~~-aYvv~ELsstV~~~~~d~------~g~~~--~~q~is~--~-p~~~~g~~~~~~~~~~adI~iSp   67 (222)
                      -++|+    |++++ +++.++ +.+|.+|....      .....  ....+..  . +...        ...+..|.+||
T Consensus       126 ~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~  196 (397)
T 1sq9_A          126 ALKWGASNDRLLSHRLVATDV-KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP--------SQFATSVDISE  196 (397)
T ss_dssp             EEEEECCC----CEEEEEEET-TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSS--------CCCCCEEEECT
T ss_pred             EEEEeeccCCCCceEEEEEeC-CCcEEEEeCCccccccccceeeccCcceeeeeeccccCC--------CCCceEEEECC
Confidence            36788    99999 666554 78888887643      11111  1111110  0 0000        14468999999


Q ss_pred             CCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCC
Q 027522           68 DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGK  147 (222)
Q Consensus        68 DgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk  147 (222)
                      |+ +|+++ -..+.|.+|++..   ++.+..+....                 .++    ....    ..+.++++|+|+
T Consensus       197 ~~-~l~~~-~~dg~i~i~d~~~---~~~~~~~~~~~-----------------~h~----~~~~----~i~~i~~~~~~~  246 (397)
T 1sq9_A          197 RG-LIATG-FNNGTVQISELST---LRPLYNFESQH-----------------SMI----NNSN----SIRSVKFSPQGS  246 (397)
T ss_dssp             TS-EEEEE-CTTSEEEEEETTT---TEEEEEEECCC------------------------CCCC----CEEEEEECSSTT
T ss_pred             Cc-eEEEE-eCCCcEEEEECCC---CceeEEEeccc-----------------ccc----ccCC----ccceEEECCCCC
Confidence            99 55554 4578999999853   44443333200                 000    0011    267899999999


Q ss_pred             EEEEEe
Q 027522          148 RLYVTN  153 (222)
Q Consensus       148 ~LyvaN  153 (222)
                      +|+++.
T Consensus       247 ~l~~~~  252 (397)
T 1sq9_A          247 LLAIAH  252 (397)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999886

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.0057  Score=51.76  Aligned_cols=102  Identities=10%  Similarity=0.063  Sum_probs=61.1

Q ss_pred             eEEEcCCCCeEEEEeccCc---eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcC-CCCEEEEEeCCC
Q 027522            4 RFLHDPSKDIGFVGCALAS---TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISL-DDRFLYFSNWLH   79 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELss---tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp-DgrfLYvSnRgh   79 (222)
                      .++|+|+++..++.+--+.   +|.+|........     +.....   +.     ......|.+|| |+++|+++.. .
T Consensus       219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-----~~~~~~---~~-----~~~v~~~~~s~~~~~~l~s~~~-d  284 (416)
T 2pm9_A          219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-----LQTLNQ---GH-----QKGILSLDWCHQDEHLLLSSGR-D  284 (416)
T ss_dssp             EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-----SBCCCS---CC-----SSCEEEEEECSSCSSCEEEEES-S
T ss_pred             EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-----cEEeec---Cc-----cCceeEEEeCCCCCCeEEEEeC-C
Confidence            4789999864444444455   7888876421111     011110   11     14568999999 8888877764 7


Q ss_pred             CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           80 GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        80 ~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +.|.+|++..   ++.+..+...                           ..    ....++++|||+.++++.
T Consensus       285 g~v~~wd~~~---~~~~~~~~~~---------------------------~~----~v~~~~~s~~~~~~l~s~  324 (416)
T 2pm9_A          285 NTVLLWNPES---AEQLSQFPAR---------------------------GN----WCFKTKFAPEAPDLFACA  324 (416)
T ss_dssp             SEEEEECSSS---CCEEEEEECS---------------------------SS----CCCCEEECTTCTTEEEEC
T ss_pred             CCEEEeeCCC---CccceeecCC---------------------------CC----ceEEEEECCCCCCEEEEE
Confidence            7899998843   4444333320                           11    267899999994444554

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.23  E-value=0.01  Score=50.35  Aligned_cols=68  Identities=6%  Similarity=0.073  Sum_probs=45.9

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+|+++...++ +.+|.+|.....+...  +...      .+       .....|.+|||+++|.++.  .+.|.
T Consensus       218 ~~~~s~~g~~l~sgs~-dg~v~iwd~~~~~~~~--~~~~------~~-------~~v~~v~~sp~~~~la~~~--d~~v~  279 (343)
T 2xzm_R          218 HLSISPNGKYIATGGK-DKKLLIWDILNLTYPQ--REFD------AG-------STINQIAFNPKLQWVAVGT--DQGVK  279 (343)
T ss_dssp             EEEECTTSSEEEEEET-TCEEEEEESSCCSSCS--EEEE------CS-------SCEEEEEECSSSCEEEEEE--SSCEE
T ss_pred             EEEECCCCCEEEEEcC-CCeEEEEECCCCcccc--eeec------CC-------CcEEEEEECCCCCEEEEEC--CCCEE
Confidence            3678999998877765 7888888763222111  1111      01       3368999999999997764  66799


Q ss_pred             EEEecC
Q 027522           84 QYNIED   89 (222)
Q Consensus        84 vf~i~d   89 (222)
                      +|++..
T Consensus       280 iw~~~~  285 (343)
T 2xzm_R          280 IFNLMT  285 (343)
T ss_dssp             EEESSS
T ss_pred             EEEeCC
Confidence            999854

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.20  E-value=0.00095  Score=62.30  Aligned_cols=100  Identities=13%  Similarity=0.117  Sum_probs=59.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC-C-----
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW-L-----   78 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR-g-----   78 (222)
                      ..|+|+|+++|..  -+++|.++..+ +|+.  ++...-.  ....       .....+.+||||++|+.+.. .     
T Consensus        21 ~~~s~dg~~~~~~--~d~~i~~~~~~-~g~~--~~~~~~~--~~~~-------~~~~~~~~SpDg~~la~~~~~~~~~~~   86 (719)
T 1z68_A           21 PNWISGQEYLHQS--ADNNIVLYNIE-TGQS--YTILSNR--TMKS-------VNASNYGLSPDRQFVYLESDYSKLWRY   86 (719)
T ss_dssp             CEESSSSEEEEEC--TTSCEEEEESS-SCCE--EEEECHH--HHHT-------TTCSEEEECTTSSEEEEEEEEEECSSS
T ss_pred             cEECCCCeEEEEc--CCCCEEEEEcC-CCcE--EEEEccc--cccc-------cceeeEEECCCCCeEEEEecCceeEEe
Confidence            5789999655543  47889988764 3432  2222111  0000       11478999999998875543 2     


Q ss_pred             --CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           79 --HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        79 --h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                        .+.|.+|+++.   ++++   ..                             +.+.+..+.+++||||++|..+.
T Consensus        87 s~~~~i~~~d~~~---g~~~---~~-----------------------------~~l~~~~~~~~~SPDG~~la~~~  128 (719)
T 1z68_A           87 SYTATYYIYDLSN---GEFV---RG-----------------------------NELPRPIQYLCWSPVGSKLAYVY  128 (719)
T ss_dssp             CEEEEEEEEETTT---TEEC---CS-----------------------------SCCCSSBCCEEECSSTTCEEEEE
T ss_pred             ecceEEEEEECCC---Cccc---cc-----------------------------eecCcccccceECCCCCEEEEEE
Confidence              46788888743   3331   00                             00111267899999999988764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.19  E-value=0.021  Score=46.88  Aligned_cols=66  Identities=8%  Similarity=0.139  Sum_probs=46.2

Q ss_pred             EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcC---CCCEEEEEeCCCCcE
Q 027522            6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISL---DDRFLYFSNWLHGDI   82 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp---DgrfLYvSnRgh~sI   82 (222)
                      +|+|+++++++.++ +.+|.+|... .++.  ......     .        .....|.+||   ++++|+++. ..+.|
T Consensus       175 ~~~~~~~~l~~~~~-d~~i~i~d~~-~~~~--~~~~~~-----~--------~~v~~~~~~~~~~~~~~l~~~~-~dg~i  236 (357)
T 3i2n_A          175 AYNQEERVVCAGYD-NGDIKLFDLR-NMAL--RWETNI-----K--------NGVCSLEFDRKDISMNKLVATS-LEGKF  236 (357)
T ss_dssp             CCC-CCCEEEEEET-TSEEEEEETT-TTEE--EEEEEC-----S--------SCEEEEEESCSSSSCCEEEEEE-STTEE
T ss_pred             ccCCCCCEEEEEcc-CCeEEEEECc-cCce--eeecCC-----C--------CceEEEEcCCCCCCCCEEEEEC-CCCeE
Confidence            38899999888876 6788888764 3332  111111     1        3468999999   999998876 46789


Q ss_pred             EEEEecC
Q 027522           83 RQYNIED   89 (222)
Q Consensus        83 ~vf~i~d   89 (222)
                      .+|++..
T Consensus       237 ~i~d~~~  243 (357)
T 3i2n_A          237 HVFDMRT  243 (357)
T ss_dssp             EEEEEEE
T ss_pred             EEEeCcC
Confidence            9999954

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.17  E-value=0.0069  Score=57.26  Aligned_cols=59  Identities=10%  Similarity=0.153  Sum_probs=39.2

Q ss_pred             eeEEEEcCCCCEEE-EEeCC-CC--cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCC
Q 027522           60 ITDFLISLDDRFLY-FSNWL-HG--DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG  135 (222)
Q Consensus        60 ~adI~iSpDgrfLY-vSnRg-h~--sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~g  135 (222)
                      ...+.+||||++|. .++++ .+  .|.+++++.   ++.+.....                            +..   
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t---g~~~~~~~~----------------------------~~~---  172 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG---AKELPDVLE----------------------------RVK---  172 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT---TEEEEEEEE----------------------------EEC---
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC---CCCCccccc----------------------------Ccc---
Confidence            57899999999885 55543 33  788888743   444322111                            111   


Q ss_pred             CCeeEEECCCCCEEEEEe
Q 027522          136 GPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus       136 gPr~~~lspdGk~LyvaN  153 (222)
                       ...+++||||++||.+.
T Consensus       173 -~~~~~wspDg~~l~~~~  189 (710)
T 2xdw_A          173 -FSCMAWTHDGKGMFYNA  189 (710)
T ss_dssp             -SCCEEECTTSSEEEEEE
T ss_pred             -cceEEEEeCCCEEEEEE
Confidence             35689999999999886

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.0088  Score=59.27  Aligned_cols=83  Identities=11%  Similarity=0.081  Sum_probs=51.6

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP  137 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP  137 (222)
                      +....+.+|||| +|-++. .+++|++|++..   +.++.+..+.+               +.        .|.  .+..
T Consensus       576 ~~V~svafSpdG-~lAsgs-~D~tv~lwd~~~---~~~~~~~~~~~---------------~~--------~gh--~~~V  625 (902)
T 2oaj_A          576 GKTSAINNSNIG-FVGIAY-AAGSLMLIDRRG---PAIIYMENIRE---------------IS--------GAQ--SACV  625 (902)
T ss_dssp             CSEEEEEECBTS-EEEEEE-TTSEEEEEETTT---TEEEEEEEGGG---------------TC--------SSC--CCCE
T ss_pred             CcEEEEEecCCc-EEEEEe-CCCcEEEEECCC---CeEEEEeehhH---------------hc--------ccc--ccce
Confidence            457899999999 775554 578999999843   44432211100               00        011  1237


Q ss_pred             eeEEEC-----CCC---CEEEEEeCCCCccccccccccccCCcEEEEEEeeCC-CCCe
Q 027522          138 QMIQLS-----LDG---KRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSE-KGGM  186 (222)
Q Consensus       138 r~~~ls-----pdG---k~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~-~G~l  186 (222)
                      ..+++|     |||   ++|+++.                +..+|..+|+++. +|+.
T Consensus       626 ~sv~Fs~~~~~~Dg~~~~~l~sgs----------------~D~tv~~wd~~p~~~g~~  667 (902)
T 2oaj_A          626 TCIEFVIMEYGDDGYSSILMVCGT----------------DMGEVITYKILPASGGKF  667 (902)
T ss_dssp             EEEEEEEEECTTSSSEEEEEEEEE----------------TTSEEEEEEEEECGGGCE
T ss_pred             EEEEEEEEecCCCCCcceEEEEEe----------------cCCcEEEEEEecCCCCcE
Confidence            889999     886   7887775                3466666777554 5654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.15  E-value=0.0094  Score=51.50  Aligned_cols=80  Identities=16%  Similarity=0.123  Sum_probs=53.5

Q ss_pred             EeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            3 IRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         3 vr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      +.+.++|+++++++..+ +++|.+|... ++  +..+.+..++  ..        .....+.+|||+++|+++.. .+.|
T Consensus       174 ~~~~~~~~~~~l~~~~~-d~~i~iwd~~-~~--~~~~~~~~~~--h~--------~~v~~~~~s~~~~~l~s~~~-dg~i  238 (437)
T 3gre_A          174 MRAFVNEEKSLLVALTN-LSRVIIFDIR-TL--ERLQIIENSP--RH--------GAVSSICIDEECCVLILGTT-RGII  238 (437)
T ss_dssp             EEEEECSSCEEEEEEET-TSEEEEEETT-TC--CEEEEEECCG--GG--------CCEEEEEECTTSCEEEEEET-TSCE
T ss_pred             EEEEEcCCCCEEEEEeC-CCeEEEEeCC-CC--eeeEEEccCC--CC--------CceEEEEECCCCCEEEEEcC-CCeE
Confidence            34457788888888776 7888888764 23  2233333221  11        34689999999999987775 6789


Q ss_pred             EEEEecCCCCCeEEEEEE
Q 027522           83 RQYNIEDPKNPVLTGQIW  100 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~  100 (222)
                      .+|++..   ++++..+.
T Consensus       239 ~iwd~~~---~~~~~~~~  253 (437)
T 3gre_A          239 DIWDIRF---NVLIRSWS  253 (437)
T ss_dssp             EEEETTT---TEEEEEEB
T ss_pred             EEEEcCC---ccEEEEEe
Confidence            9999843   55544443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.13  E-value=0.0061  Score=50.09  Aligned_cols=61  Identities=7%  Similarity=-0.038  Sum_probs=44.8

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCe
Q 027522           59 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ  138 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr  138 (222)
                      ....|.+|||+++|+++. ..+.|.+|++..   ++++..+..                           ...    ..+
T Consensus       275 ~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~---~~~~~~~~~---------------------------~~~----~v~  319 (368)
T 3mmy_A          275 AVNGIAFHPVHGTLATVG-SDGRFSFWDKDA---RTKLKTSEQ---------------------------LDQ----PIS  319 (368)
T ss_dssp             CEEEEEECTTTCCEEEEE-TTSCEEEEETTT---TEEEEECCC---------------------------CSS----CEE
T ss_pred             ceEEEEEecCCCEEEEEc-cCCeEEEEECCC---CcEEEEecC---------------------------CCC----Cce
Confidence            468999999999997776 468899999843   555332221                           011    268


Q ss_pred             eEEECCCCCEEEEEeC
Q 027522          139 MIQLSLDGKRLYVTNS  154 (222)
Q Consensus       139 ~~~lspdGk~LyvaNs  154 (222)
                      .++++|||++|+++.+
T Consensus       320 ~~~~s~~g~~l~~~s~  335 (368)
T 3mmy_A          320 ACCFNHNGNIFAYASS  335 (368)
T ss_dssp             EEEECTTSSCEEEEEC
T ss_pred             EEEECCCCCeEEEEec
Confidence            8999999999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.09  E-value=0.011  Score=47.72  Aligned_cols=96  Identities=10%  Similarity=0.093  Sum_probs=60.4

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++  ++..-.+++|.+|... +++  ....+...    .        .....|.+||||+++  +.-..+.|.
T Consensus       189 ~~~~~~~~~--~~~~~~dg~i~i~d~~-~~~--~~~~~~~~----~--------~~i~~~~~~~~~~l~--~~~~dg~v~  249 (313)
T 3odt_A          189 HLAVVDDGH--FISCSNDGLIKLVDMH-TGD--VLRTYEGH----E--------SFVYCIKLLPNGDIV--SCGEDRTVR  249 (313)
T ss_dssp             EEEEEETTE--EEEEETTSEEEEEETT-TCC--EEEEEECC----S--------SCEEEEEECTTSCEE--EEETTSEEE
T ss_pred             EEEEcCCCe--EEEccCCCeEEEEECC-chh--hhhhhhcC----C--------ceEEEEEEecCCCEE--EEecCCEEE
Confidence            467899988  4455557889888764 232  22322211    1        446899999999633  333578999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++++..+...                           ...    ...++++|+|+ |+++.
T Consensus       250 iwd~~~---~~~~~~~~~~---------------------------~~~----i~~~~~~~~~~-~~~~~  284 (313)
T 3odt_A          250 IWSKEN---GSLKQVITLP---------------------------AIS----IWSVDCMSNGD-IIVGS  284 (313)
T ss_dssp             EECTTT---CCEEEEEECS---------------------------SSC----EEEEEECTTSC-EEEEE
T ss_pred             EEECCC---CceeEEEecc---------------------------Cce----EEEEEEccCCC-EEEEe
Confidence            998843   4454443321                           111    57899999999 44555

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.07  E-value=0.022  Score=48.94  Aligned_cols=100  Identities=11%  Similarity=0.106  Sum_probs=62.3

Q ss_pred             EEEcC--CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            5 FLHDP--SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         5 ~afhP--~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      +.|+|  ++++++..++ +.+|.+|... +++.  .+.....    .        .....|.+|||+++|..+. ..+.|
T Consensus       202 ~~~~~~~~g~~l~sgs~-Dg~v~~wd~~-~~~~--~~~~~~h----~--------~~v~~v~~~p~~~~l~s~s-~D~~v  264 (354)
T 2pbi_B          202 LDLAPSETGNTFVSGGC-DKKAMVWDMR-SGQC--VQAFETH----E--------SDVNSVRYYPSGDAFASGS-DDATC  264 (354)
T ss_dssp             EEECCCSSCCEEEEEET-TSCEEEEETT-TCCE--EEEECCC----S--------SCEEEEEECTTSSEEEEEE-TTSCE
T ss_pred             EEEEeCCCCCEEEEEeC-CCeEEEEECC-CCcE--EEEecCC----C--------CCeEEEEEeCCCCEEEEEe-CCCeE
Confidence            34555  5667766654 7888888764 3332  2222111    1        3468899999999987766 47899


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ++|++..   .+.+.....                             .....+...++++|+|++|+++.
T Consensus       265 ~lwd~~~---~~~~~~~~~-----------------------------~~~~~~~~~~~~s~~g~~l~~g~  303 (354)
T 2pbi_B          265 RLYDLRA---DREVAIYSK-----------------------------ESIIFGASSVDFSLSGRLLFAGY  303 (354)
T ss_dssp             EEEETTT---TEEEEEECC-----------------------------TTCCSCEEEEEECTTSSEEEEEE
T ss_pred             EEEECCC---CcEEEEEcC-----------------------------CCcccceeEEEEeCCCCEEEEEE
Confidence            9999853   222211111                             00111256899999999998886

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.07  E-value=0.02  Score=47.62  Aligned_cols=27  Identities=11%  Similarity=-0.139  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCEEEEEeCCCC------cEEEEEec
Q 027522           61 TDFLISLDDRFLYFSNWLHG------DIRQYNIE   88 (222)
Q Consensus        61 adI~iSpDgrfLYvSnRgh~------sI~vf~i~   88 (222)
                      ..+.+|||| .+|++++..+      ...+|.++
T Consensus       174 ~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          174 SSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             CEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred             ccccCCCCe-EEEEEecccccccccccccEEEeC
Confidence            678899999 9998887532      45666664

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.032  Score=47.21  Aligned_cols=72  Identities=7%  Similarity=0.043  Sum_probs=49.8

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCC-CeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDG-SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g-~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      -++|+|+++++..... +.+|.+|..+..+ .++..+++.   .. .        .....|..|||+++|..+. ..+.|
T Consensus       112 ~v~~sp~g~~las~s~-D~~v~iwd~~~~~~~~~~~~~~~---~h-~--------~~v~~v~~~p~~~~l~s~s-~D~~i  177 (330)
T 2hes_X          112 GVAWSNDGYYLATCSR-DKSVWIWETDESGEEYECISVLQ---EH-S--------QDVKHVIWHPSEALLASSS-YDDTV  177 (330)
T ss_dssp             EEEECTTSCEEEEEET-TSCEEEEECCTTCCCCEEEEEEC---CC-S--------SCEEEEEECSSSSEEEEEE-TTSCE
T ss_pred             EEEECCCCCEEEEEeC-CCEEEEEeccCCCCCeEEEEEec---cC-C--------CceEEEEECCCCCEEEEEc-CCCeE
Confidence            3689999998877765 8889999874222 333333221   11 1        3468999999999987666 47899


Q ss_pred             EEEEecC
Q 027522           83 RQYNIED   89 (222)
Q Consensus        83 ~vf~i~d   89 (222)
                      ++|++..
T Consensus       178 ~iW~~~~  184 (330)
T 2hes_X          178 RIWKDYD  184 (330)
T ss_dssp             EEEEEET
T ss_pred             EEEECCC
Confidence            9999853

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.04  E-value=0.018  Score=49.50  Aligned_cols=72  Identities=14%  Similarity=0.035  Sum_probs=49.9

Q ss_pred             eEEEcCCCCeEEEEeccCce-EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALAST-MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsst-V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      .++|+|+|+++...++ +.+ |.+|... +++.  ...+..  ....        .....+.+||||++|..+.. ++.|
T Consensus       200 ~~~~s~~g~~l~s~s~-d~~~v~iwd~~-~~~~--~~~~~~--g~h~--------~~v~~~~~s~~~~~l~s~s~-d~~v  264 (355)
T 3vu4_A          200 MVRLNRKSDMVATCSQ-DGTIIRVFKTE-DGVL--VREFRR--GLDR--------ADVVDMKWSTDGSKLAVVSD-KWTL  264 (355)
T ss_dssp             EEEECTTSSEEEEEET-TCSEEEEEETT-TCCE--EEEEEC--TTCC--------SCEEEEEECTTSCEEEEEET-TCEE
T ss_pred             EEEECCCCCEEEEEeC-CCCEEEEEECC-CCcE--EEEEEc--CCCC--------CcEEEEEECCCCCEEEEEEC-CCEE
Confidence            4689999998888776 677 8888763 3432  222221  0011        44689999999999987764 6899


Q ss_pred             EEEEecCC
Q 027522           83 RQYNIEDP   90 (222)
Q Consensus        83 ~vf~i~d~   90 (222)
                      .+|++..+
T Consensus       265 ~iw~~~~~  272 (355)
T 3vu4_A          265 HVFEIFND  272 (355)
T ss_dssp             EEEESSCC
T ss_pred             EEEEccCC
Confidence            99999653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.03  E-value=0.041  Score=46.56  Aligned_cols=100  Identities=10%  Similarity=0.158  Sum_probs=61.9

Q ss_pred             cC-CCCeEEEEeccCceEEEEEeCCCCC--eeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            8 DP-SKDIGFVGCALASTMVRFSKTQDGS--WNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         8 hP-~g~~aYvv~ELsstV~~~~~d~~g~--~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      +| +++++..... +.+|.+|.......  ..... ...+    .+..     ....+|.+|||+++|..+. ..+.|++
T Consensus        35 ~~~d~~~l~sgs~-D~~v~iWd~~~~~~~~~~~~~-~~~l----~~h~-----~~V~~~~~~~~~~~l~s~s-~D~~v~l  102 (343)
T 2xzm_R           35 ENEDSPVLISGSR-DKTVMIWKLYEEEQNGYFGIP-HKAL----TGHN-----HFVSDLALSQENCFAISSS-WDKTLRL  102 (343)
T ss_dssp             TTCCCCEEEEEET-TSCEEEEEECSSCCSSBSEEE-EEEE----CCCS-----SCEEEEEECSSTTEEEEEE-TTSEEEE
T ss_pred             cCCCCCEEEEEcC-CCEEEEEECCcCCcccccccc-cchh----ccCC-----CceEEEEECCCCCEEEEEc-CCCcEEE
Confidence            55 7777776665 78888887642110  11111 1111    1211     3468999999999997665 4789999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++..   ++.+..+..                             ..  +..+.++++|||++|+.+.
T Consensus       103 wd~~~---~~~~~~~~~-----------------------------h~--~~v~~v~~sp~~~~l~s~~  137 (343)
T 2xzm_R          103 WDLRT---GTTYKRFVG-----------------------------HQ--SEVYSVAFSPDNRQILSAG  137 (343)
T ss_dssp             EETTS---SCEEEEEEC-----------------------------CC--SCEEEEEECSSTTEEEEEE
T ss_pred             EECCC---CcEEEEEcC-----------------------------CC--CcEEEEEECCCCCEEEEEc
Confidence            99853   334332221                             00  1157899999999998875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.02  E-value=0.013  Score=48.12  Aligned_cols=112  Identities=13%  Similarity=0.020  Sum_probs=64.1

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcC-CCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISL-DDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp-DgrfLYvSnRgh~sI   82 (222)
                      -++|+|++   .+++-.+.+|.+|.....+...... ....   .        ......|.++| |+++|+++.. .+.|
T Consensus       155 ~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~---~--------~~~i~~i~~~~~~~~~l~~~~~-dg~i  218 (342)
T 1yfq_A          155 TMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTI-EESG---L--------KYQIRDVALLPKEQEGYACSSI-DGRV  218 (342)
T ss_dssp             EEEECSSE---EEEEESTTEEEEEESSCCTTCCCEE-EECS---C--------SSCEEEEEECSGGGCEEEEEET-TSEE
T ss_pred             EEEecCCc---EEEEeCCCeEEEEECCcccccccee-eecC---C--------CCceeEEEECCCCCCEEEEEec-CCcE
Confidence            36788887   4444457788888764313221111 1111   0        13468999999 9999988775 7899


Q ss_pred             EEEEecCCC-C--CeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           83 RQYNIEDPK-N--PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        83 ~vf~i~d~~-~--~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .+|+++... +  .+....+....                    ..  ..|..-.+....++++|+|++|+++.
T Consensus       219 ~i~~~~~~~~~~~~~~~~~~~~~~--------------------~~--~~~~~~~~~i~~~~~s~~~~~l~~~~  270 (342)
T 1yfq_A          219 AVEFFDDQGDDYNSSKRFAFRCHR--------------------LN--LKDTNLAYPVNSIEFSPRHKFLYTAG  270 (342)
T ss_dssp             EEEECCTTCCSTTCTTCEEEECCC--------------------CC--TTCCSSCCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEEcCCCcccccccceeeeccc--------------------cc--ccccccceeEEEEEEcCCCCEEEEec
Confidence            999995430 0  12211122100                    00  00111122367899999999998887

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.01  E-value=0.0027  Score=59.25  Aligned_cols=67  Identities=12%  Similarity=0.172  Sum_probs=43.0

Q ss_pred             eEEEcCCCCeEEEEecc--------CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEE
Q 027522            4 RFLHDPSKDIGFVGCAL--------ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS   75 (222)
Q Consensus         4 r~afhP~g~~aYvv~EL--------sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvS   75 (222)
                      .++|+|||+++.....-        ..+|.++..+ +|+.       +.+....        .....+.+||||++|..+
T Consensus        64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~-~g~~-------~~~~~l~--------~~~~~~~~SPDG~~la~~  127 (719)
T 1z68_A           64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS-NGEF-------VRGNELP--------RPIQYLCWSPVGSKLAYV  127 (719)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEE-------CCSSCCC--------SSBCCEEECSSTTCEEEE
T ss_pred             eEEECCCCCeEEEEecCceeEEeecceEEEEEECC-CCcc-------ccceecC--------cccccceECCCCCEEEEE
Confidence            47899999987766552        3567777653 3422       0001111        224779999999988776


Q ss_pred             eCCCCcEEEEEec
Q 027522           76 NWLHGDIRQYNIE   88 (222)
Q Consensus        76 nRgh~sI~vf~i~   88 (222)
                      .  .+.|.+|++.
T Consensus       128 ~--~~~i~~~~~~  138 (719)
T 1z68_A          128 Y--QNNIYLKQRP  138 (719)
T ss_dssp             E--TTEEEEESST
T ss_pred             E--CCeEEEEeCC
Confidence            4  4689999774

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.96  E-value=0.026  Score=47.76  Aligned_cols=69  Identities=9%  Similarity=0.023  Sum_probs=45.8

Q ss_pred             eEEEcC-CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDP-SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP-~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      -++|+| +++++++.++ +.+|.+|...  +  ...+.+.... ..        ......+.+|||+++|+++.. .+.|
T Consensus       123 ~~~~~~~~~~~l~s~~~-d~~i~iwd~~--~--~~~~~~~~~~-~~--------~~~v~~~~~~~~~~~l~~~~~-d~~i  187 (383)
T 3ei3_B          123 GMKFNQFNTNQLFVSSI-RGATTLRDFS--G--SVIQVFAKTD-SW--------DYWYCCVDVSVSRQMLATGDS-TGRL  187 (383)
T ss_dssp             EEEEETTEEEEEEEEET-TTEEEEEETT--S--CEEEEEECCC-CS--------SCCEEEEEEETTTTEEEEEET-TSEE
T ss_pred             EEEeCCCCCCEEEEEeC-CCEEEEEECC--C--CceEEEeccC-CC--------CCCeEEEEECCCCCEEEEECC-CCCE
Confidence            367899 5666666654 7888888764  2  1122222111 11        144689999999999987775 5799


Q ss_pred             EEEEe
Q 027522           83 RQYNI   87 (222)
Q Consensus        83 ~vf~i   87 (222)
                      .+|++
T Consensus       188 ~i~d~  192 (383)
T 3ei3_B          188 LLLGL  192 (383)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99998

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.96  E-value=0.0068  Score=56.62  Aligned_cols=141  Identities=13%  Similarity=0.081  Sum_probs=77.0

Q ss_pred             eEEEcCCCC-eEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC---CCEEEEEeCC-
Q 027522            4 RFLHDPSKD-IGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD---DRFLYFSNWL-   78 (222)
Q Consensus         4 r~afhP~g~-~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD---grfLYvSnRg-   78 (222)
                      =++|.|+|. .+|| .|....|.++..  +|......+..++..-..+. ........-+|+++||   .++|||+..- 
T Consensus        18 ~~a~~pdG~~rl~V-~er~G~i~~~~~--~g~~~~~~~~~~~~~~~~g~-~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           18 GALHSGDGSQRLFI-LEKEGYVKILTP--EGEIFKEPYLDIHKLVQSGI-KGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             EEECCSSSSCCEEE-EETTTEEEEECT--TSCBCSSCSEECTTTBCCCC-SSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             EEEECCCCCeEEEE-EeCCceEEEEeC--CCCeeeeeecCCcceeccCc-cccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            478999997 6776 477889988843  34321112223332111110 0000134578999998   7899998642 


Q ss_pred             -----------CCcEEEEEecCCC-------CCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeE
Q 027522           79 -----------HGDIRQYNIEDPK-------NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI  140 (222)
Q Consensus        79 -----------h~sI~vf~i~d~~-------~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~  140 (222)
                                 .+.|+.|.+++..       +.+.+-++..                      .    .+.|   .-..|
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~----------------------~----~~~H---~g~~l  144 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE----------------------L----HRKH---LGGQL  144 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE----------------------S----SSSS---CEEEE
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC----------------------C----CCcc---cCCcE
Confidence                       1367788885421       1122111111                      0    1222   25679


Q ss_pred             EECCCCCEEEEEeCCCCc-----cccccccccccCCcEEEEEEeeC
Q 027522          141 QLSLDGKRLYVTNSLFSA-----WDCQFYPELKEKGSHMLQIDVNS  181 (222)
Q Consensus       141 ~lspdGk~LyvaNsl~~~-----wd~Q~yp~~~s~~~~i~~~dvd~  181 (222)
                      +++||| +|||+.-=-..     -+.|   ++.+....|+|+|.|.
T Consensus       145 ~fgpDG-~LYv~~Gd~~~~~~~~~~~q---~~~~~~GkIlRi~~dg  186 (463)
T 2wg3_C          145 LFGPDG-FLYIILGDGMITLDDMEEMD---GLSDFTGSVLRLDVDT  186 (463)
T ss_dssp             EECTTS-CEEEEECCTTCCHHHHHHCT---TCCSCTTEEEEEBCCC
T ss_pred             eECCCC-cEEEEeCCCCCCCCcccccc---CcCCCCeeEEEEECCC
Confidence            999999 59998531111     1122   1224468899998875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.95  E-value=0.035  Score=52.45  Aligned_cols=57  Identities=7%  Similarity=0.091  Sum_probs=35.4

Q ss_pred             EEEcCCCCe-EEEEeccCc---eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC
Q 027522            5 FLHDPSKDI-GFVGCALAS---TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW   77 (222)
Q Consensus         5 ~afhP~g~~-aYvv~ELss---tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR   77 (222)
                      ++|+|||++ ||...+-++   +|.++..+ +|+....   .+..            .....+..||||+.||.+..
T Consensus       130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~-tg~~~~~---~~~~------------~~~~~~~wspDg~~l~~~~~  190 (710)
T 2xdw_A          130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVD-GAKELPD---VLER------------VKFSCMAWTHDGKGMFYNAY  190 (710)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETT-TTEEEEE---EEEE------------ECSCCEEECTTSSEEEEEEC
T ss_pred             EEECCCCCEEEEEEcCCCCceEEEEEEECC-CCCCCcc---cccC------------cccceEEEEeCCCEEEEEEE
Confidence            689999985 466666555   67777653 4543221   1111            11257899999998877654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.94  E-value=0.014  Score=51.16  Aligned_cols=98  Identities=10%  Similarity=0.029  Sum_probs=64.3

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+++++.+.+. +.+|.+|... .+.  .   +...    .+.     ......+.++|||++|+.+. .++.|.+
T Consensus       156 v~~~~~~~~l~sgs~-D~~i~iwd~~-~~~--~---~~~~----~~h-----~~~V~~v~~~p~~~~l~s~s-~D~~i~~  218 (410)
T 1vyh_C          156 ISFDHSGKLLASCSA-DMTIKLWDFQ-GFE--C---IRTM----HGH-----DHNVSSVSIMPNGDHIVSAS-RDKTIKM  218 (410)
T ss_dssp             EEECTTSSEEEEEET-TSCCCEEETT-SSC--E---EECC----CCC-----SSCEEEEEECSSSSEEEEEE-TTSEEEE
T ss_pred             EEEcCCCCEEEEEeC-CCeEEEEeCC-CCc--e---eEEE----cCC-----CCCEEEEEEeCCCCEEEEEe-CCCeEEE
Confidence            678999997766654 7888888663 222  1   1122    111     13468999999999997666 4789999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++..   ++.+..+..  .                         ..    .-+.++++|||++|+.+.
T Consensus       219 wd~~~---~~~~~~~~~--h-------------------------~~----~v~~~~~~~~g~~l~s~s  253 (410)
T 1vyh_C          219 WEVQT---GYCVKTFTG--H-------------------------RE----WVRMVRPNQDGTLIASCS  253 (410)
T ss_dssp             EETTT---CCEEEEEEC--C-------------------------SS----CEEEEEECTTSSEEEEEE
T ss_pred             EECCC---CcEEEEEeC--C-------------------------Cc----cEEEEEECCCCCEEEEEc
Confidence            99853   333322221  0                         11    257899999999888775

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=96.91  E-value=0.0074  Score=55.05  Aligned_cols=70  Identities=7%  Similarity=-0.025  Sum_probs=45.4

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC--CCCc
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW--LHGD   81 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR--gh~s   81 (222)
                      -++|+|||+++..+..-+.++-+|..+ .|..  .+   +.... .        .....+..||| |.||++.+  +.+.
T Consensus        26 ~~~~~~DG~~la~~s~~~g~~~lw~~~-~g~~--~~---lt~~~-~--------~~~~~~~~spd-~~l~~~~~~~g~~~   89 (582)
T 3o4h_A           26 SLQGVVDGDKLLVVGFSEGSVNAYLYD-GGET--VK---LNREP-I--------NSVLDPHYGVG-RVILVRDVSKGAEQ   89 (582)
T ss_dssp             EEEEEETTTEEEEEEEETTEEEEEEEE-TTEE--EE---CCSSC-C--------SEECEECTTCS-EEEEEEECSTTSCC
T ss_pred             eeecCCCCCeEEEEEccCCceeEEEEc-CCCc--Ee---eeccc-c--------cccccccCCCC-eEEEEeccCCCCcc
Confidence            357999998877776656776666553 2321  11   22111 0        23467889999 99999987  5666


Q ss_pred             EEEEEecC
Q 027522           82 IRQYNIED   89 (222)
Q Consensus        82 I~vf~i~d   89 (222)
                      +.+|.++.
T Consensus        90 ~~l~~~~~   97 (582)
T 3o4h_A           90 HALFKVNT   97 (582)
T ss_dssp             EEEEEEET
T ss_pred             eEEEEEec
Confidence            78888753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.048  Score=47.02  Aligned_cols=108  Identities=12%  Similarity=0.029  Sum_probs=66.8

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeC--CCCCeeEE------EEEEecCcccccccCCCCCCceeEEE--EcCCCCEEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKT--QDGSWNHE------VAISVKSLKVQNWILPEMPGLITDFL--ISLDDRFLY   73 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d--~~g~~~~~------q~is~~p~~~~g~~~~~~~~~~adI~--iSpDgrfLY   73 (222)
                      -++|+|+++++++..+ +.+|.+|..+  ..|+....      ..+.+.|....        .....+.  .++|+++|+
T Consensus       116 ~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~  186 (437)
T 3gre_A          116 QITMIPNFDAFAVSSK-DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKN--------EYAVRMRAFVNEEKSLLV  186 (437)
T ss_dssp             EEEECTTSSEEEEEET-TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSC--------CCEEEEEEEECSSCEEEE
T ss_pred             EEEEeCCCCEEEEEeC-CCEEEEEEeccccCCceeeccccceeEEEEccCcccc--------cCceEEEEEEcCCCCEEE
Confidence            3789999998887776 7888888653  23332221      11222221111        2334444  889999998


Q ss_pred             EEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           74 FSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        74 vSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ++.. .+.|.+|++..   ++.+..+..-                             .-.+..+.++++|+|++|+++.
T Consensus       187 ~~~~-d~~i~iwd~~~---~~~~~~~~~~-----------------------------~h~~~v~~~~~s~~~~~l~s~~  233 (437)
T 3gre_A          187 ALTN-LSRVIIFDIRT---LERLQIIENS-----------------------------PRHGAVSSICIDEECCVLILGT  233 (437)
T ss_dssp             EEET-TSEEEEEETTT---CCEEEEEECC-----------------------------GGGCCEEEEEECTTSCEEEEEE
T ss_pred             EEeC-CCeEEEEeCCC---CeeeEEEccC-----------------------------CCCCceEEEEECCCCCEEEEEc
Confidence            7775 67999999843   4443333320                             0011268899999999999886

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=96.82  E-value=0.026  Score=53.65  Aligned_cols=31  Identities=10%  Similarity=0.173  Sum_probs=23.0

Q ss_pred             CceeEEEEcCCCC-EEEEEeCCCC--cEEEEEec
Q 027522           58 GLITDFLISLDDR-FLYFSNWLHG--DIRQYNIE   88 (222)
Q Consensus        58 ~~~adI~iSpDgr-fLYvSnRgh~--sI~vf~i~   88 (222)
                      .....+..||||+ .++.+||..+  .|.+++++
T Consensus       260 ~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~  293 (740)
T 4a5s_A          260 HYLCDVTWATQERISLQWLRRIQNYSVMDICDYD  293 (740)
T ss_dssp             EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred             eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC
Confidence            3467889999999 5567888765  46677764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=96.82  E-value=0.046  Score=46.93  Aligned_cols=63  Identities=22%  Similarity=0.236  Sum_probs=44.7

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCc-EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGD-IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG  136 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~s-I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~gg  136 (222)
                      .....|.+||||++|..+.. +++ |.+|++..   ++.+..+..|..                         .    +.
T Consensus       196 ~~v~~~~~s~~g~~l~s~s~-d~~~v~iwd~~~---~~~~~~~~~g~h-------------------------~----~~  242 (355)
T 3vu4_A          196 NPIKMVRLNRKSDMVATCSQ-DGTIIRVFKTED---GVLVREFRRGLD-------------------------R----AD  242 (355)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TCSEEEEEETTT---CCEEEEEECTTC-------------------------C----SC
T ss_pred             CceEEEEECCCCCEEEEEeC-CCCEEEEEECCC---CcEEEEEEcCCC-------------------------C----Cc
Confidence            45789999999999976664 677 99999853   445444332100                         0    12


Q ss_pred             CeeEEECCCCCEEEEEe
Q 027522          137 PQMIQLSLDGKRLYVTN  153 (222)
Q Consensus       137 Pr~~~lspdGk~LyvaN  153 (222)
                      -+.+++||||++|+.+.
T Consensus       243 v~~~~~s~~~~~l~s~s  259 (355)
T 3vu4_A          243 VVDMKWSTDGSKLAVVS  259 (355)
T ss_dssp             EEEEEECTTSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEE
Confidence            57899999999998886

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.80  E-value=0.021  Score=56.43  Aligned_cols=76  Identities=12%  Similarity=0.076  Sum_probs=52.7

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|+|+++.+.++ +++|.+|... +++  ....+.   . ..        .....|.+||||++|.++. .++.|.
T Consensus       620 ~~~~s~~~~~l~s~~~-d~~i~vw~~~-~~~--~~~~~~---~-h~--------~~v~~~~~s~~~~~l~s~~-~d~~v~  682 (1249)
T 3sfz_A          620 HACFSQDGQRIASCGA-DKTLQVFKAE-TGE--KLLDIK---A-HE--------DEVLCCAFSSDDSYIATCS-ADKKVK  682 (1249)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEETT-TCC--EEEEEC---C-CS--------SCEEEEEECTTSSEEEEEE-TTSEEE
T ss_pred             EEEECCCCCEEEEEeC-CCeEEEEECC-CCC--EEEEec---c-CC--------CCEEEEEEecCCCEEEEEe-CCCeEE
Confidence            3689999999988775 7789988764 332  222221   1 11        4468999999999998776 477899


Q ss_pred             EEEecCCCCCeEEEEE
Q 027522           84 QYNIEDPKNPVLTGQI   99 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v   99 (222)
                      +|++..   ++++...
T Consensus       683 vwd~~~---~~~~~~~  695 (1249)
T 3sfz_A          683 IWDSAT---GKLVHTY  695 (1249)
T ss_dssp             EEETTT---CCEEEEE
T ss_pred             EEECCC---CceEEEE
Confidence            999853   4554433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.80  E-value=0.081  Score=44.06  Aligned_cols=79  Identities=8%  Similarity=0.089  Sum_probs=50.4

Q ss_pred             eEEEcC-CCCeEEEEeccCceEEEEEeCCCC---CeeEEEEEEecCcccccccCCCCCCceeEEEEcC-CCCEEEEEeCC
Q 027522            4 RFLHDP-SKDIGFVGCALASTMVRFSKTQDG---SWNHEVAISVKSLKVQNWILPEMPGLITDFLISL-DDRFLYFSNWL   78 (222)
Q Consensus         4 r~afhP-~g~~aYvv~ELsstV~~~~~d~~g---~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp-DgrfLYvSnRg   78 (222)
                      -++|+| +++++++.++ +++|.+|..+...   .+..............+.     ......|.++| ++++|+++. .
T Consensus        48 ~~~~s~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~-~  120 (408)
T 4a11_B           48 TLDIEPVEGRYMLSGGS-DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH-----RYSVETVQWYPHDTGMFTSSS-F  120 (408)
T ss_dssp             EEEECTTTCCEEEEEET-TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC-----SSCEEEEEECTTCTTCEEEEE-T
T ss_pred             EEEEecCCCCEEEEEcC-CCeEEEEECCCCcccceEeccccccccccccccC-----CCcEEEEEEccCCCcEEEEEe-C
Confidence            478999 9999988876 7889999875221   222222223222111111     25578999999 666665554 5


Q ss_pred             CCcEEEEEecC
Q 027522           79 HGDIRQYNIED   89 (222)
Q Consensus        79 h~sI~vf~i~d   89 (222)
                      .+.|.+|++..
T Consensus       121 d~~i~iwd~~~  131 (408)
T 4a11_B          121 DKTLKVWDTNT  131 (408)
T ss_dssp             TSEEEEEETTT
T ss_pred             CCeEEEeeCCC
Confidence            78999999853

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.78  E-value=0.032  Score=51.54  Aligned_cols=121  Identities=9%  Similarity=0.201  Sum_probs=63.6

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCc-cccCcccCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVP-EVQGHRLRGG  136 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~-~v~G~~~~gg  136 (222)
                      ..+..|.+.|||| |||+.|..+.|.+++  + ..++.. .+..   +                 |+.. ...|   .+|
T Consensus        27 ~~P~~~a~~pdG~-l~V~e~~gg~I~~~~--~-~~g~~~-~~~~---~-----------------~~~~~~~~g---~~G   78 (454)
T 1cru_A           27 NKPHALLWGPDNQ-IWLTERATGKILRVN--P-ESGSVK-TVFQ---V-----------------PEIVNDADG---QNG   78 (454)
T ss_dssp             SSEEEEEECTTSC-EEEEETTTCEEEEEC--T-TTCCEE-EEEE---C-----------------TTCCCCTTS---SCS
T ss_pred             CCceEEEEcCCCc-EEEEEcCCCEEEEEE--C-CCCcEe-EEec---C-----------------CccccccCC---CCc
Confidence            3468999999999 778888666666553  2 223321 1111   0                 0000 0012   236


Q ss_pred             CeeEEECCC---CCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeec
Q 027522          137 PQMIQLSLD---GKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRY  211 (222)
Q Consensus       137 Pr~~~lspd---Gk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~  211 (222)
                      +-.|+++||   +.+|||+++-... ....  ........|.|++.+..++.+.-.+.++-++.....  --+|.|.|
T Consensus        79 llgia~~Pdf~~~g~lYv~~s~~~~-~~~~--~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~--H~~~~l~f  151 (454)
T 1cru_A           79 LLGFAFHPDFKNNPYIYISGTFKNP-KSTD--KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD--HQSGRLVI  151 (454)
T ss_dssp             EEEEEECTTTTTSCEEEEEEEEECT-TC----CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS--CCEEEEEE
T ss_pred             eeEEEECCCcCcCCEEEEEEecccc-CCCc--cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC--CCCCeEeE
Confidence            778999998   9999999841000 0000  000013578888887666666422222223433211  24677777

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.78  E-value=0.0019  Score=63.34  Aligned_cols=114  Identities=15%  Similarity=0.141  Sum_probs=73.4

Q ss_pred             EcCCCCeEEEEecc----------Cce----EEEEEeC------CCCCeeEEE-----EEEecCcccccc---cCCCCCC
Q 027522            7 HDPSKDIGFVGCAL----------AST----MVRFSKT------QDGSWNHEV-----AISVKSLKVQNW---ILPEMPG   58 (222)
Q Consensus         7 fhP~g~~aYvv~EL----------sst----V~~~~~d------~~g~~~~~q-----~is~~p~~~~g~---~~~~~~~   58 (222)
                      -.++|+|+|..|.=          +++    |.+|.+.      ++|+++...     ++..-.....+.   -+-+.|+
T Consensus       244 ~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pk  323 (638)
T 3sbq_A          244 ADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPK  323 (638)
T ss_dssp             ECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESS
T ss_pred             CCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccCCceEEEEeCCC
Confidence            47889999998862          111    6667652      146655433     333221000010   0113568


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC-----C-----CCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccc
Q 027522           59 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDP-----K-----NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEV  128 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~-----~-----~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v  128 (222)
                      .+-.|.+||||||+|+++-+...+.||+++.-     +     +-.+++++.+                           
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~---------------------------  376 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL---------------------------  376 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC---------------------------
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC---------------------------
Confidence            88999999999999999999999999999620     0     0122333333                           


Q ss_pred             cCcccCCCCeeEEECCCCCEEEEEe
Q 027522          129 QGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus       129 ~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                       |.-    |++.+++++| ..|.+-
T Consensus       377 -GlG----PlHt~Fd~~G-~aYTtl  395 (638)
T 3sbq_A          377 -GLG----PLHTTFDGRG-NAYTTL  395 (638)
T ss_dssp             -CSC----EEEEEECSSS-EEEEEE
T ss_pred             -CCc----ccEEEECCCC-ceEeee
Confidence             554    9999999999 788875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.77  E-value=0.071  Score=45.12  Aligned_cols=116  Identities=13%  Similarity=0.164  Sum_probs=65.3

Q ss_pred             EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522            6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY   85 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf   85 (222)
                      .+.|+|+.+++.+.-...|..+  +.+|++...  +.+.. ...+.     +..+..+.+++||++|++ ....+.|..|
T Consensus        83 ~~~~dG~~lv~~~~~~~~v~~v--d~~Gk~l~~--~~~~~-~~~~~-----~~~~~~v~~~~~G~~lv~-~~~~~~v~~~  151 (276)
T 3no2_A           83 RILPDGNALVAWCGHPSTILEV--NMKGEVLSK--TEFET-GIERP-----HAQFRQINKNKKGNYLVP-LFATSEVREI  151 (276)
T ss_dssp             EECTTSCEEEEEESTTEEEEEE--CTTSCEEEE--EEECC-SCSSG-----GGSCSCCEECTTSCEEEE-ETTTTEEEEE
T ss_pred             EECCCCCEEEEecCCCCEEEEE--eCCCCEEEE--EeccC-CCCcc-----cccccCceECCCCCEEEE-ecCCCEEEEE
Confidence            4667888777765544556555  445654322  22221 11110     012345678999998865 4466777777


Q ss_pred             EecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccccc
Q 027522           86 NIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYP  165 (222)
Q Consensus        86 ~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp  165 (222)
                      +   +. ++++-+...+                            .    .|......++|+.|+++.            
T Consensus       152 d---~~-G~~~w~~~~~----------------------------~----~~~~~~~~~~g~~~v~~~------------  183 (276)
T 3no2_A          152 A---PN-GQLLNSVKLS----------------------------G----TPFSSAFLDNGDCLVACG------------  183 (276)
T ss_dssp             C---TT-SCEEEEEECS----------------------------S----CCCEEEECTTSCEEEECB------------
T ss_pred             C---CC-CCEEEEEECC----------------------------C----CccceeEcCCCCEEEEeC------------
Confidence            4   33 6664333321                            1    277778888888664443            


Q ss_pred             ccccCCcEEEEEEeeCCCCCe
Q 027522          166 ELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       166 ~~~s~~~~i~~~dvd~~~G~l  186 (222)
                          ++..++.+  |++||++
T Consensus       184 ----~~~~v~~~--d~~tG~~  198 (276)
T 3no2_A          184 ----DAHCFVQL--NLESNRI  198 (276)
T ss_dssp             ----TTSEEEEE--CTTTCCE
T ss_pred             ----CCCeEEEE--eCcCCcE
Confidence                34566666  5677776

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=96.77  E-value=0.072  Score=42.72  Aligned_cols=71  Identities=15%  Similarity=0.206  Sum_probs=43.3

Q ss_pred             eEEEcCC---CCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCC----CEEEEEe
Q 027522            4 RFLHDPS---KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDD----RFLYFSN   76 (222)
Q Consensus         4 r~afhP~---g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDg----rfLYvSn   76 (222)
                      .++|+|+   ++.+.+... +..+ ++.....+.+.....  +. .. .        .....|.+|||+    ++|+++.
T Consensus       172 ~~~~~p~~~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~--~~-~h-~--------~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          172 CLSWCPSRFSPEKLAVSAL-EQAI-IYQRGKDGKLHVAAK--LP-GH-K--------SLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             EEEECCCSSSCCEEEEEET-TEEE-EEEECTTSCEEEEEE--CC-CC-C--------SCEEEEEECCCSSCSSEEEEEEE
T ss_pred             EEEeccCCCCCcEEEEecC-CCcE-EEEccCCCceeeeee--cC-CC-C--------cceeEEEECCCCCCcceEEEEEc
Confidence            4678887   666655554 5555 333333454433222  11 11 1        446899999998    5665554


Q ss_pred             CCCCcEEEEEecC
Q 027522           77 WLHGDIRQYNIED   89 (222)
Q Consensus        77 Rgh~sI~vf~i~d   89 (222)
                       ..+.|.+|++..
T Consensus       238 -~dg~i~iwd~~~  249 (351)
T 3f3f_A          238 -KDGRIRIFKITE  249 (351)
T ss_dssp             -TTSCEEEEEEEE
T ss_pred             -CCCeEEEEeCCC
Confidence             678999999964

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.76  E-value=0.033  Score=52.08  Aligned_cols=104  Identities=15%  Similarity=0.291  Sum_probs=66.1

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCC-eeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGS-WNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~-~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      .++|+|++....+.+--+.+|.+|..+.... +...+. .+     .+..     .....+.+||||++|..+.+ ++.|
T Consensus       387 ~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~-~~-----~~h~-----~~v~~v~~s~~g~~l~sgs~-Dg~v  454 (694)
T 3dm0_A          387 AIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQR-RL-----TGHS-----HFVEDVVLSSDGQFALSGSW-DGEL  454 (694)
T ss_dssp             EEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEE-EE-----ECCS-----SCEEEEEECTTSSEEEEEET-TSEE
T ss_pred             EEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccc-ee-----cCCC-----CcEEEEEECCCCCEEEEEeC-CCcE
Confidence            3578888766666666689999998753222 111111 11     1110     34689999999999976664 7899


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ++|++..   ++.+.....                             ..  +.-+.++++|||++|+.+.
T Consensus       455 ~vwd~~~---~~~~~~~~~-----------------------------h~--~~v~~~~~s~~~~~l~s~s  491 (694)
T 3dm0_A          455 RLWDLAA---GVSTRRFVG-----------------------------HT--KDVLSVAFSLDNRQIVSAS  491 (694)
T ss_dssp             EEEETTT---TEEEEEEEC-----------------------------CS--SCEEEEEECTTSSCEEEEE
T ss_pred             EEEECCC---CcceeEEeC-----------------------------CC--CCEEEEEEeCCCCEEEEEe
Confidence            9999843   444322221                             10  1156889999999988774

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.74  E-value=0.043  Score=45.57  Aligned_cols=71  Identities=10%  Similarity=-0.003  Sum_probs=47.4

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC--CCEEEEEeCCCCc
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD--DRFLYFSNWLHGD   81 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD--grfLYvSnRgh~s   81 (222)
                      -++|+|+|+++...++ +.+|.+|..+. +......++       .+..     .....|.+|++  |++|..+. ..++
T Consensus        14 ~~~~s~~g~~las~s~-D~~v~iw~~~~-~~~~~~~~l-------~gH~-----~~V~~v~~s~~~~g~~l~s~s-~D~~   78 (297)
T 2pm7_B           14 DAVMDYYGKRMATCSS-DKTIKIFEVEG-ETHKLIDTL-------TGHE-----GPVWRVDWAHPKFGTILASCS-YDGK   78 (297)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEEBCS-SCBCCCEEE-------CCCS-----SCEEEEEECCGGGCSEEEEEE-TTTE
T ss_pred             EEEECCCCCEEEEEeC-CCEEEEEecCC-CCcEEEEEE-------cccc-----CCeEEEEecCCCcCCEEEEEc-CCCE
Confidence            3689999999887765 88899997742 222212221       1110     34678999874  88886655 5789


Q ss_pred             EEEEEecC
Q 027522           82 IRQYNIED   89 (222)
Q Consensus        82 I~vf~i~d   89 (222)
                      |++|++..
T Consensus        79 v~iWd~~~   86 (297)
T 2pm7_B           79 VMIWKEEN   86 (297)
T ss_dssp             EEEEEBSS
T ss_pred             EEEEEcCC
Confidence            99999953

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.058  Score=51.68  Aligned_cols=103  Identities=12%  Similarity=0.028  Sum_probs=67.8

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC--CCEEEEEeCCCCc
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD--DRFLYFSNWLHGD   81 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD--grfLYvSnRgh~s   81 (222)
                      -++|+|+++++++.++ +++|.+|... .++........   .. .        .....|.+||+  +++|.++.. .+.
T Consensus        14 ~l~~s~dg~~latg~~-dg~I~vwd~~-~~~~~~~~~l~---~h-~--------~~V~~l~~s~~~~~~~l~s~s~-Dg~   78 (753)
T 3jro_A           14 DAVLDYYGKRLATCSS-DKTIKIFEVE-GETHKLIDTLT---GH-E--------GPVWRVDWAHPKFGTILASCSY-DGK   78 (753)
T ss_dssp             EECCCSSSCCEEEEET-TTEEEEEEEE-TTEEEEEEEEC---CC-S--------SCEEEEEECCTTSCSEEEEEET-TSC
T ss_pred             EEEECCCCCeEEEEEC-CCcEEEEecC-CCCCccceecc---CC-c--------CceEEEEecCCCCCCEEEEEeC-CCe
Confidence            3679999999888876 7889999764 23343333221   11 1        34689999998  999877764 789


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCC--CCEEEEEe
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLD--GKRLYVTN  153 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspd--Gk~LyvaN  153 (222)
                      |.+|++.. +....+.....                           ...    ....++++|+  |+.|+++.
T Consensus        79 I~vwd~~~-~~~~~~~~~~~---------------------------h~~----~V~~v~~sp~~~~~~l~sgs  120 (753)
T 3jro_A           79 VLIWKEEN-GRWSQIAVHAV---------------------------HSA----SVNSVQWAPHEYGPLLLVAS  120 (753)
T ss_dssp             EEEEEEET-TEEEEEEEECC---------------------------CSS----CEEEEEECCGGGCSEEEEEE
T ss_pred             EEEEECCC-CcccccccccC---------------------------CCC----CeEEEEECCCCCCCEEEEEe
Confidence            99999954 21112111110                           011    2678999999  99998886

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.72  E-value=0.1  Score=42.50  Aligned_cols=73  Identities=18%  Similarity=0.372  Sum_probs=47.3

Q ss_pred             EEEcCC-CCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPS-KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~-g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ++|+|+ ++++....+ +.+|.+|...............+     .+.     ......+.+||||++|+.+.. .+.|.
T Consensus        44 v~~sp~~~~~l~S~s~-D~~i~vWd~~~~~~~~~~~~~~l-----~~h-----~~~V~~~~~s~dg~~l~s~~~-d~~i~  111 (340)
T 4aow_A           44 IATTPQFPDMILSASR-DKTIIMWKLTRDETNYGIPQRAL-----RGH-----SHFVSDVVISSDGQFALSGSW-DGTLR  111 (340)
T ss_dssp             EEECTTCTTEEEEEET-TSCEEEEEECCSSSCSEEEEEEE-----CCC-----SSCEEEEEECTTSSEEEEEET-TSEEE
T ss_pred             EEEeCCCCCEEEEEcC-CCeEEEEECCCCCcccceeeEEE-----eCC-----CCCEEEEEECCCCCEEEEEcc-cccce
Confidence            689998 466666654 89999998753221111111111     111     145689999999999987764 67899


Q ss_pred             EEEecC
Q 027522           84 QYNIED   89 (222)
Q Consensus        84 vf~i~d   89 (222)
                      +|+...
T Consensus       112 ~~~~~~  117 (340)
T 4aow_A          112 LWDLTT  117 (340)
T ss_dssp             EEETTT
T ss_pred             EEeecc
Confidence            998743

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.70  E-value=0.08  Score=42.74  Aligned_cols=74  Identities=8%  Similarity=0.166  Sum_probs=48.7

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      +.|+|++ .  +...++++|.+|..+ +|+.  .+++...     +.     ......+.+||||++|.++. ..+.|.+
T Consensus        31 l~WS~~~-~--lAvg~D~tV~iWd~~-tg~~--~~~~~~~-----~~-----~~~V~~v~~~~~~~~l~sgs-~Dg~v~i   93 (318)
T 4ggc_A           31 VDWSSGN-V--LAVALDNSVYLWSAS-SGDI--LQLLQME-----QP-----GEYISSVAWIKEGNYLAVGT-SSAEVQL   93 (318)
T ss_dssp             EEECTTS-E--EEEEETTEEEEEETT-TCCE--EEEEECC-----ST-----TCCEEEEEECTTSSEEEEEE-TTSEEEE
T ss_pred             EEECCCC-E--EEEEeCCEEEEEECC-CCCE--EEEEEec-----CC-----CCeEEEEEECCCCCEEEEEE-CCCcEEE
Confidence            5688886 3  334579999999763 4543  3443322     11     13468999999999997665 5789999


Q ss_pred             EEecCCCCCeEEEE
Q 027522           85 YNIEDPKNPVLTGQ   98 (222)
Q Consensus        85 f~i~d~~~~~L~~~   98 (222)
                      |++..   ++++..
T Consensus        94 w~~~~---~~~~~~  104 (318)
T 4ggc_A           94 WDVQQ---QKRLRN  104 (318)
T ss_dssp             EETTT---TEEEEE
T ss_pred             eecCC---ceeEEE
Confidence            98853   555433

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.70  E-value=0.015  Score=48.90  Aligned_cols=70  Identities=13%  Similarity=0.014  Sum_probs=38.2

Q ss_pred             eEEEcC-CCCeEEEEeccC-----ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEE-EEe
Q 027522            4 RFLHDP-SKDIGFVGCALA-----STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLY-FSN   76 (222)
Q Consensus         4 r~afhP-~g~~aYvv~ELs-----stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLY-vSn   76 (222)
                      .++|+| +++.++.+.+-.     ..|+++..+ .+.+.     .+.. ...+       .....+.+||||++|+ +++
T Consensus       192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~~~~-----~l~~-~~~~-------~~~~~~~~spdg~~l~~~~~  257 (396)
T 3c5m_A          192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED-GSNVR-----KIKE-HAEG-------ESCTHEFWIPDGSAMAYVSY  257 (396)
T ss_dssp             EEEEETTEEEEEEEEECSCSSSCSCCCEEEETT-SCCCE-----ESSC-CCTT-------EEEEEEEECTTSSCEEEEEE
T ss_pred             cceECCCCCCEEEEEecCCCCCCCceEEEEECC-CCcee-----Eeec-cCCC-------ccccceEECCCCCEEEEEec
Confidence            357899 777555555422     357776553 22221     1111 1001       2356789999999754 555


Q ss_pred             C-CCCc--EEEEEe
Q 027522           77 W-LHGD--IRQYNI   87 (222)
Q Consensus        77 R-gh~s--I~vf~i   87 (222)
                      + +...  |.+|++
T Consensus       258 ~~~~~~~~l~~~d~  271 (396)
T 3c5m_A          258 FKGQTDRVIYKANP  271 (396)
T ss_dssp             ETTTCCEEEEEECT
T ss_pred             CCCCccceEEEEEC
Confidence            4 3334  777766

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.65  E-value=0.058  Score=46.93  Aligned_cols=96  Identities=10%  Similarity=0.157  Sum_probs=61.3

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      +.+++++ .  +...|+++|.+|... +|+.  .+...+..     .     ......|.+||||++|.+.. ..+.|.+
T Consensus       111 l~wS~~n-~--lAvgld~tV~lWd~~-tg~~--~~~~~~~~-----~-----~~~V~sv~fspdg~~lasgs-~Dg~v~i  173 (420)
T 4gga_A          111 VDWSSGN-V--LAVALDNSVYLWSAS-SGDI--LQLLQMEQ-----P-----GEYISSVAWIKEGNYLAVGT-SSAEVQL  173 (420)
T ss_dssp             EEECTTS-E--EEEEETTEEEEEETT-TCCE--EEEEECCS-----T-----TCCEEEEEECTTSSEEEEEE-TTSCEEE
T ss_pred             EEECCCC-E--EEEEeCCEEEEEECC-CCCE--EEEEEecC-----C-----CCcEEEEEECCCCCEEEEEE-CCCeEEE
Confidence            4566654 3  334579999999763 4543  33333321     0     03468999999999997665 5789999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++..   ++.+....                             |..    -+..+++++++.|..+.
T Consensus       174 Wd~~~---~~~~~~~~-----------------------------~h~----~~v~~~s~~~~~l~sgs  206 (420)
T 4gga_A          174 WDVQQ---QKRLRNMT-----------------------------SHS----ARVGSLSWNSYILSSGS  206 (420)
T ss_dssp             EETTT---TEEEEEEC-----------------------------CCS----SCEEEEEEETTEEEEEE
T ss_pred             EEcCC---CcEEEEEe-----------------------------CCC----CceEEEeeCCCEEEEEe
Confidence            99853   44432221                             222    45677888888877664

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.017  Score=56.22  Aligned_cols=72  Identities=11%  Similarity=0.066  Sum_probs=48.4

Q ss_pred             EeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            3 IRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         3 vr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      .-.+|+|+|+.+-+... +++|.+|..  ++      .+.... . ..   +-.......+.+||||++|++++. .+.|
T Consensus        89 ~~vawSPdG~~LAs~s~-dg~V~iwd~--~~------~l~~l~-~-~~---~~~~~sv~svafSPDG~~LAsgs~-DGtV  153 (588)
T 2j04_A           89 RVCKPSPIDDWMAVLSN-NGNVSVFKD--NK------MLTNLD-S-KG---NLSSRTYHCFEWNPIESSIVVGNE-DGEL  153 (588)
T ss_dssp             EEEEECSSSSCEEEEET-TSCEEEEET--TE------EEEECC-C-SS---CSTTTCEEEEEECSSSSCEEEEET-TSEE
T ss_pred             EEEEECCCCCEEEEEeC-CCcEEEEeC--Cc------eeeecc-C-CC---ccccccEEEEEEcCCCCEEEEEcC-CCEE
Confidence            34789999998877765 777888863  22      112111 1 00   000023679999999999999986 6789


Q ss_pred             EEEEecC
Q 027522           83 RQYNIED   89 (222)
Q Consensus        83 ~vf~i~d   89 (222)
                      .+|++..
T Consensus       154 kIWd~~~  160 (588)
T 2j04_A          154 QFFSIRK  160 (588)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999954

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=96.63  E-value=0.073  Score=42.74  Aligned_cols=72  Identities=13%  Similarity=0.065  Sum_probs=49.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++| |+++++++.++ +++|.+|..+ ++  ...+.+...    .        .....|.+|||+++|+++.. .+.|.+
T Consensus        24 ~~~-~~~~~l~s~~~-dg~v~vw~~~-~~--~~~~~~~~~----~--------~~v~~~~~~~~~~~l~~~~~-dg~i~~   85 (313)
T 3odt_A           24 VVA-VDDSKVASVSR-DGTVRLWSKD-DQ--WLGTVVYTG----Q--------GFLNSVCYDSEKELLLFGGK-DTMING   85 (313)
T ss_dssp             EEE-EETTEEEEEET-TSEEEEEEES-SS--EEEEEEEEC----S--------SCEEEEEEETTTTEEEEEET-TSCEEE
T ss_pred             EEe-cCCCEEEEEEc-CCcEEEEECC-CC--EEEEEeecC----C--------ccEEEEEECCCCCEEEEecC-CCeEEE
Confidence            466 88888777765 7889988874 22  222222221    1        44689999999999988875 678999


Q ss_pred             EEecCCCCCe
Q 027522           85 YNIEDPKNPV   94 (222)
Q Consensus        85 f~i~d~~~~~   94 (222)
                      |++.+....+
T Consensus        86 ~~~~~~~~~~   95 (313)
T 3odt_A           86 VPLFATSGED   95 (313)
T ss_dssp             EETTCCTTSC
T ss_pred             EEeeecCCCC
Confidence            9996644343

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.61  E-value=0.095  Score=45.17  Aligned_cols=106  Identities=9%  Similarity=0.024  Sum_probs=59.4

Q ss_pred             EEEcC-CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDP-SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP-~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      +.|+| +++++.. +-.+.+|.+|.....+..  .+.+       .+.     ......|.+||||++|..+. .++.|+
T Consensus       211 ~~~~~~~~~~l~s-gs~D~~v~~wd~~~~~~~--~~~~-------~~h-----~~~v~~v~~~p~~~~l~s~s-~D~~i~  274 (380)
T 3iz6_a          211 LSINSLNANMFIS-GSCDTTVRLWDLRITSRA--VRTY-------HGH-----EGDINSVKFFPDGQRFGTGS-DDGTCR  274 (380)
T ss_dssp             EEECSSSCCEEEE-EETTSCEEEEETTTTCCC--CEEE-------CCC-----SSCCCEEEECTTSSEEEEEC-SSSCEE
T ss_pred             EEeecCCCCEEEE-EECCCeEEEEECCCCCcc--eEEE-------CCc-----CCCeEEEEEecCCCeEEEEc-CCCeEE
Confidence            45666 4444443 444777777765322211  1111       111     03457899999999986555 578999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++.+......                    +..    ..........++++|+|++|+++.
T Consensus       275 lwd~~~---~~~~~~~~~~--------------------~~~----~~~~~~~v~~~~~s~~g~~l~~g~  317 (380)
T 3iz6_a          275 LFDMRT---GHQLQVYNRE--------------------PDR----NDNELPIVTSVAFSISGRLLFAGY  317 (380)
T ss_dssp             EEETTT---TEEEEEECCC--------------------CSS----SCCSSCSCSEEEECSSSSEEEEEC
T ss_pred             EEECCC---CcEEEEeccc--------------------ccc----cccccCceEEEEECCCCCEEEEEE
Confidence            999843   4332222110                    000    000011246799999999999886

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.047  Score=54.06  Aligned_cols=96  Identities=8%  Similarity=0.088  Sum_probs=64.6

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|+++++.+... +.+|.+|... .+  +.  ... .+    ..      .....|.+|| |++|..+. ..++|.
T Consensus        22 ~lafspdg~~lAsgs~-Dg~I~lw~~~-~~--~~--~~~-~~----~~------~~V~~l~fsp-g~~L~S~s-~D~~v~   82 (902)
T 2oaj_A           22 AAAFDFTQNLLAIATV-TGEVHIYGQQ-QV--EV--VIK-LE----DR------SAIKEMRFVK-GIYLVVIN-AKDTVY   82 (902)
T ss_dssp             EEEEETTTTEEEEEET-TSEEEEECST-TC--EE--EEE-CS----SC------CCEEEEEEET-TTEEEEEE-TTCEEE
T ss_pred             EEEECCCCCEEEEEeC-CCEEEEEeCC-Cc--EE--EEE-cC----CC------CCEEEEEEcC-CCEEEEEE-CcCeEE
Confidence            4789999998887775 6788888542 22  11  111 11    11      3468999999 89776555 578999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++++..+...                                +....++++|+|++|+++.
T Consensus        83 lWd~~~---~~~~~~~~~~--------------------------------~~V~~v~~sp~g~~l~sgs  117 (902)
T 2oaj_A           83 VLSLYS---QKVLTTVFVP--------------------------------GKITSIDTDASLDWMLIGL  117 (902)
T ss_dssp             EEETTT---CSEEEEEECS--------------------------------SCEEEEECCTTCSEEEEEE
T ss_pred             EEECCC---CcEEEEEcCC--------------------------------CCEEEEEECCCCCEEEEEc
Confidence            999853   4443333210                                1156899999999999986

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.51  E-value=0.013  Score=53.12  Aligned_cols=63  Identities=11%  Similarity=0.055  Sum_probs=39.8

Q ss_pred             EEEcCC---CCeEEEEe--ccCceEEEEEeCCC----CCeeEEEEE-EecCcccccccCCCCCCceeEEEEcCCCCEEEE
Q 027522            5 FLHDPS---KDIGFVGC--ALASTMVRFSKTQD----GSWNHEVAI-SVKSLKVQNWILPEMPGLITDFLISLDDRFLYF   74 (222)
Q Consensus         5 ~afhP~---g~~aYvv~--ELsstV~~~~~d~~----g~~~~~q~i-s~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYv   74 (222)
                      ++|||+   ..++||.-  .-.+.|.+|.++..    +.+...+++ +-.|..  +.      -....|+++||| +||+
T Consensus        85 ia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~--~~------H~g~~l~fgpDG-~Lyv  155 (347)
T 3das_A           85 IALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKG--VI------HNGGRIAFGPDK-MLYA  155 (347)
T ss_dssp             EEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCC--SS------CCCCCEEECTTS-CEEE
T ss_pred             eEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCC--CC------ccCccccCCCCC-CEEE
Confidence            789996   68889852  23567999988531    244333433 323321  11      234789999999 6999


Q ss_pred             Ee
Q 027522           75 SN   76 (222)
Q Consensus        75 Sn   76 (222)
                      +.
T Consensus       156 t~  157 (347)
T 3das_A          156 GT  157 (347)
T ss_dssp             EC
T ss_pred             EE
Confidence            94

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.47  E-value=0.045  Score=48.02  Aligned_cols=69  Identities=16%  Similarity=0.177  Sum_probs=44.0

Q ss_pred             EEEcCCC-CeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcC-CCCEEEEEeCCCCcE
Q 027522            5 FLHDPSK-DIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISL-DDRFLYFSNWLHGDI   82 (222)
Q Consensus         5 ~afhP~g-~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp-DgrfLYvSnRgh~sI   82 (222)
                      ++|||.. +.+.+.. .+.+|.+|..+. +...  ..+..     .|.     ......|.+|| |+++|+.+. .+++|
T Consensus       125 l~~~P~~~~~lasGs-~dg~i~lWd~~~-~~~~--~~~~~-----~gH-----~~~V~~l~f~p~~~~~l~s~s-~D~~v  189 (435)
T 4e54_B          125 LAWHPTHPSTVAVGS-KGGDIMLWNFGI-KDKP--TFIKG-----IGA-----GGSITGLKFNPLNTNQFYASS-MEGTT  189 (435)
T ss_dssp             EEECSSCTTCEEEEE-TTSCEEEECSSC-CSCC--EEECC-----CSS-----SCCCCEEEECSSCTTEEEEEC-SSSCE
T ss_pred             EEEeCCCCCEEEEEe-CCCEEEEEECCC-CCce--eEEEc-----cCC-----CCCEEEEEEeCCCCCEEEEEe-CCCEE
Confidence            7899965 4555554 488999997642 2211  11111     111     03468999998 678886655 57899


Q ss_pred             EEEEec
Q 027522           83 RQYNIE   88 (222)
Q Consensus        83 ~vf~i~   88 (222)
                      ++|++.
T Consensus       190 ~iwd~~  195 (435)
T 4e54_B          190 RLQDFK  195 (435)
T ss_dssp             EEEETT
T ss_pred             EEeecc
Confidence            999984

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=96.39  E-value=0.037  Score=52.66  Aligned_cols=71  Identities=15%  Similarity=0.245  Sum_probs=42.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC-----CC
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW-----LH   79 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR-----gh   79 (222)
                      ..|+|+|+++|..   +.+|..+..+ +|+-  .+.++.  .......     ....++.+||||++|+.+..     .|
T Consensus        22 ~~w~~dg~~~~~~---~~~i~~~~~~-~~~~--~~~~~~--~~~~~~~-----~~~~~~~~Spdg~~l~~~~~~~~~~r~   88 (740)
T 4a5s_A           22 LRWISDHEYLYKQ---ENNILVFNAE-YGNS--SVFLEN--STFDEFG-----HSINDYSISPDGQFILLEYNYVKQWRH   88 (740)
T ss_dssp             EEECSSSEEEEEE---TTEEEEEETT-TCCE--EEEECT--TTTTTCC-----SCCCEEEECTTSSEEEEEEEEEECSSS
T ss_pred             cEECCCCcEEEEc---CCcEEEEECC-CCce--EEEEec--hhhhhhc-----ccccceEECCCCCEEEEEECCeeeEEE
Confidence            5789999877764   7899988764 3432  222221  1111110     11245899999999876653     12


Q ss_pred             ---CcEEEEEec
Q 027522           80 ---GDIRQYNIE   88 (222)
Q Consensus        80 ---~sI~vf~i~   88 (222)
                         +++.+|++.
T Consensus        89 ~~~~~~~~~d~~  100 (740)
T 4a5s_A           89 SYTASYDIYDLN  100 (740)
T ss_dssp             CEEEEEEEEETT
T ss_pred             ccceEEEEEECC
Confidence               567778774

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.33  E-value=0.06  Score=50.32  Aligned_cols=99  Identities=9%  Similarity=0.085  Sum_probs=62.1

Q ss_pred             eEEEcCCCC-eEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKD-IGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~-~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      .++|+|++. ...+.+-.+.+|.+|... +++.  ...+   .    +.     ......|.+||||++|..+. ..+.|
T Consensus       522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~-~~~~--~~~~---~----~h-----~~~v~~v~~spdg~~l~sg~-~Dg~i  585 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSASWDKTVKVWNLS-NCKL--RSTL---A----GH-----TGYVSTVAVSPDGSLCASGG-KDGVV  585 (694)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETT-TCCE--EEEE---C----CC-----SSCEEEEEECTTSSEEEEEE-TTSBC
T ss_pred             EEEEeCCCCcceEEEEeCCCeEEEEECC-CCcE--EEEE---c----CC-----CCCEEEEEEeCCCCEEEEEe-CCCeE
Confidence            367888873 233444457888888764 2322  2221   1    11     04468999999999987665 47899


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .+|++..   ++.+..+..                            ..    ..+.+++||+|++|.++.
T Consensus       586 ~iwd~~~---~~~~~~~~~----------------------------~~----~v~~~~~sp~~~~l~~~~  621 (694)
T 3dm0_A          586 LLWDLAE---GKKLYSLEA----------------------------NS----VIHALCFSPNRYWLCAAT  621 (694)
T ss_dssp             EEEETTT---TEEEECCBC----------------------------SS----CEEEEEECSSSSEEEEEE
T ss_pred             EEEECCC---CceEEEecC----------------------------CC----cEEEEEEcCCCcEEEEEc
Confidence            9999843   443211111                            11    257899999999888776

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.30  E-value=0.32  Score=40.20  Aligned_cols=63  Identities=13%  Similarity=0.081  Sum_probs=38.2

Q ss_pred             EEEeccCceEEEEEeCCC-CCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCC--CEEEEEeCCCCcEEEEEecC
Q 027522           15 FVGCALASTMVRFSKTQD-GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDD--RFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        15 Yvv~ELsstV~~~~~d~~-g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDg--rfLYvSnRgh~sI~vf~i~d   89 (222)
                      ++.+-.+.+|.+|..... ..+.....  +     .+.     ......|..|||+  ..+.+|.-..++|.+|++..
T Consensus       173 l~sgs~D~~v~lwd~~~~~~~~~~~~~--l-----~~H-----~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          173 FVTGGADNLVKIWKYNSDAQTYVLEST--L-----EGH-----SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EEEEETTSCEEEEEEETTTTEEEEEEE--E-----CCC-----SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             EEEEcCCCcEEEEEEcCCCceEEEEEE--e-----cCC-----CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence            344445788888876421 12222222  1     111     1446899999996  34446666688999999954

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.25  E-value=0.15  Score=49.65  Aligned_cols=72  Identities=17%  Similarity=0.176  Sum_probs=50.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCe-----eEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSW-----NHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH   79 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~-----~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh   79 (222)
                      ++|||+|+++++.++ +++|-.|.... +.+     ...+++..-..+..        +....|..||||  | ++.-..
T Consensus       135 vafSPDG~~LAsgs~-DGtVkIWd~~~-~~l~~~~~i~l~ti~~~~~gh~--------~~V~sVawSPdg--L-aass~D  201 (588)
T 2j04_A          135 FEWNPIESSIVVGNE-DGELQFFSIRK-NSENTPEFYFESSIRLSDAGSK--------DWVTHIVWYEDV--L-VAALSN  201 (588)
T ss_dssp             EEECSSSSCEEEEET-TSEEEEEECCC-CTTTCCCCEEEEEEECSCTTCC--------CCEEEEEEETTE--E-EEEETT
T ss_pred             EEEcCCCCEEEEEcC-CCEEEEEECCC-Cccccccceeeeeeeccccccc--------ccEEEEEEcCCc--E-EEEeCC
Confidence            799999999999998 89999998743 432     23344432222212        457899999999  3 344458


Q ss_pred             CcEEEEEecC
Q 027522           80 GDIRQYNIED   89 (222)
Q Consensus        80 ~sI~vf~i~d   89 (222)
                      ++|.+|+++.
T Consensus       202 ~tVrlWd~~~  211 (588)
T 2j04_A          202 NSVFSMTVSA  211 (588)
T ss_dssp             CCEEEECCCS
T ss_pred             CeEEEEECCC
Confidence            9999999854

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.24  E-value=0.11  Score=47.48  Aligned_cols=63  Identities=13%  Similarity=0.044  Sum_probs=39.3

Q ss_pred             ceeEEEEcC---CCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCC
Q 027522           59 LITDFLISL---DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG  135 (222)
Q Consensus        59 ~~adI~iSp---DgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~g  135 (222)
                      ..+.+.+|+   |+..| +|.-.+++|++|++.   +++++..+..++.                           + ..
T Consensus       180 ~v~~l~fs~~~g~~~~L-aSgS~D~TIkIWDl~---TGk~l~tL~g~~~---------------------------~-v~  227 (356)
T 2w18_A          180 EETILTFAEVQGMQEAL-LGTTIMNNIVIWNLK---TGQLLKKMHIDDS---------------------------Y-QA  227 (356)
T ss_dssp             SSCEEEEEEEETSTTEE-EEEETTSEEEEEETT---TCCEEEEEECCC-------------------------------C
T ss_pred             ceeeEEeeccCCCCceE-EEecCCCcEEEEECC---CCcEEEEEcCCCc---------------------------c-ee
Confidence            345667777   44544 666678999999884   3666555542110                           0 01


Q ss_pred             CCeeEEECCCCCEEEEEe
Q 027522          136 GPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus       136 gPr~~~lspdGk~LyvaN  153 (222)
                      .-..+++||||++|++.+
T Consensus       228 ~v~~vafSpdG~~lvs~s  245 (356)
T 2w18_A          228 SVCHKAYSEMGLLFIVLS  245 (356)
T ss_dssp             CCEEEEEEETTEEEEEEC
T ss_pred             eeEEEEECCCCCEEEEec
Confidence            245678999999887755

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.19  E-value=0.22  Score=43.17  Aligned_cols=96  Identities=14%  Similarity=0.158  Sum_probs=60.6

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++++.++ +++|.+|... +|+  ..+.+...    .        .....+.++  +++|.++. ..+.|.
T Consensus       315 ~~~~~~~~~~l~sg~~-dg~i~vwd~~-~~~--~~~~~~~h----~--------~~v~~~~~~--~~~l~s~s-~dg~v~  375 (464)
T 3v7d_B          315 STIYDHERKRCISASM-DTTIRIWDLE-NGE--LMYTLQGH----T--------ALVGLLRLS--DKFLVSAA-ADGSIR  375 (464)
T ss_dssp             EEEEETTTTEEEEEET-TSCEEEEETT-TTE--EEEEECCC----S--------SCEEEEEEC--SSEEEEEE-TTSEEE
T ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEECC-CCc--EEEEEeCC----C--------CcEEEEEEc--CCEEEEEe-CCCcEE
Confidence            4789999999888775 7889888764 342  22222111    1        335666666  67776665 477899


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ++..-....                            +..    ...++++++|++|.++.
T Consensus       376 vwd~~~---~~~~~~~~~----------------------------~~~----~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          376 GWDAND---YSRKFSYHH----------------------------TNL----SAITTFYVSDNILVSGS  410 (464)
T ss_dssp             EEETTT---CCEEEEEEC----------------------------TTC----CCEEEEEECSSEEEEEE
T ss_pred             EEECCC---CceeeeecC----------------------------CCC----ccEEEEEeCCCEEEEec
Confidence            999854   222111111                            112    56789999999887775

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.18  E-value=0.18  Score=42.29  Aligned_cols=69  Identities=9%  Similarity=-0.039  Sum_probs=46.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcC--CCCEEEEEeCCCCcE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISL--DDRFLYFSNWLHGDI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp--DgrfLYvSnRgh~sI   82 (222)
                      ++|+|+|+++..... +.+|.+|... ++........       .+..     .....|.+|+  ++++|..+. ..+.|
T Consensus        19 v~~s~~g~~lasgs~-D~~v~lwd~~-~~~~~~~~~l-------~gH~-----~~V~~v~~~~~~~~~~l~s~s-~D~~v   83 (316)
T 3bg1_A           19 AQMDYYGTRLATCSS-DRSVKIFDVR-NGGQILIADL-------RGHE-----GPVWQVAWAHPMYGNILASCS-YDRKV   83 (316)
T ss_dssp             EEECGGGCEEEEEET-TTEEEEEEEE-TTEEEEEEEE-------ECCS-----SCEEEEEECCGGGSSCEEEEE-TTSCE
T ss_pred             eeEcCCCCEEEEEeC-CCeEEEEEec-CCCcEEEEEE-------cCCC-----ccEEEEEeCCCCCCCEEEEEE-CCCEE
Confidence            689999998877664 8889988764 2332222221       1110     3468899986  488876655 47899


Q ss_pred             EEEEec
Q 027522           83 RQYNIE   88 (222)
Q Consensus        83 ~vf~i~   88 (222)
                      .+|++.
T Consensus        84 ~iWd~~   89 (316)
T 3bg1_A           84 IIWREE   89 (316)
T ss_dssp             EEECCS
T ss_pred             EEEECC
Confidence            999884

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.10  E-value=0.044  Score=49.90  Aligned_cols=123  Identities=10%  Similarity=0.072  Sum_probs=70.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEE---cCCCCEEEEEeC----
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLI---SLDDRFLYFSNW----   77 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~i---SpDgrfLYvSnR----   77 (222)
                      ..||+....+|+.+=..++|.++..+ ++..+  .+ .++.....|..    ...++.|.+   .|+||.|.|++.    
T Consensus        18 ~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~--~~-~~~~~s~~g~~----~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           18 TIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHF--NV-VIDGASSNGDG----EQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTT-TCCEE--EE-CCTTTCCSSCC----SEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             ccCcCCCCEEEEEeccCCEEEEEcCC-CCeEE--EE-ecCCccccCCC----cceeeEEEEeccCCCCcEEEEEcccccc
Confidence            46889999999999999999999653 23332  22 22211100210    024589999   699777776773    


Q ss_pred             --------CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEE
Q 027522           78 --------LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRL  149 (222)
Q Consensus        78 --------gh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~L  149 (222)
                              +...|..|+..-..+++++-.+.+.+...                 ..+...|+. .++|++|+++++|. .
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~-----------------~~~~~~g~~-~~~~nDvavD~~Gn-a  150 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQD-----------------EFEKKAGKR-PFGVVQSAQDRDGN-S  150 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHH-----------------HHHHHHSSC-CEEEEEEEECTTSC-E
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccc-----------------ccccccccc-ccCCceeEECCCCC-E
Confidence                    45668888874112344433333311000                 000000111 24588999999986 8


Q ss_pred             EEEeC
Q 027522          150 YVTNS  154 (222)
Q Consensus       150 yvaNs  154 (222)
                      ||+++
T Consensus       151 YVt~s  155 (334)
T 2p9w_A          151 YVAFA  155 (334)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            88875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.09  E-value=0.019  Score=50.46  Aligned_cols=69  Identities=9%  Similarity=0.100  Sum_probs=44.3

Q ss_pred             EEEcC-CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDP-SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP-~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ++|+| ++++++..+ .+.+|.+|... .+..   +.+... ...        ......+.+|||+++|.+.+. .+.|.
T Consensus       170 l~f~p~~~~~l~s~s-~D~~v~iwd~~-~~~~---~~~~~~-~~~--------~~~~~~~~~~~~~~~l~~g~~-dg~i~  234 (435)
T 4e54_B          170 LKFNPLNTNQFYASS-MEGTTRLQDFK-GNIL---RVFASS-DTI--------NIWFCSLDVSASSRMVVTGDN-VGNVI  234 (435)
T ss_dssp             EEECSSCTTEEEEEC-SSSCEEEEETT-SCEE---EEEECC-SSC--------SCCCCCEEEETTTTEEEEECS-SSBEE
T ss_pred             EEEeCCCCCEEEEEe-CCCEEEEeecc-CCce---eEEecc-CCC--------CccEEEEEECCCCCEEEEEeC-CCcEe
Confidence            67998 466665554 58899888763 2222   222111 110        123467899999999987764 67899


Q ss_pred             EEEec
Q 027522           84 QYNIE   88 (222)
Q Consensus        84 vf~i~   88 (222)
                      +|++.
T Consensus       235 ~wd~~  239 (435)
T 4e54_B          235 LLNMD  239 (435)
T ss_dssp             EEESS
T ss_pred             eeccC
Confidence            99984

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.17  Score=48.46  Aligned_cols=70  Identities=9%  Similarity=0.159  Sum_probs=49.7

Q ss_pred             EEEcCC--CCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC--CCEEEEEeCCCC
Q 027522            5 FLHDPS--KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD--DRFLYFSNWLHG   80 (222)
Q Consensus         5 ~afhP~--g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD--grfLYvSnRgh~   80 (222)
                      ++|+|+  ++++++..+ +++|.+|..+ ++++.........    .        .....+.+||+  +++|+++.+ .+
T Consensus        59 l~~s~~~~~~~l~s~s~-Dg~I~vwd~~-~~~~~~~~~~~~h----~--------~~V~~v~~sp~~~~~~l~sgs~-dg  123 (753)
T 3jro_A           59 VDWAHPKFGTILASCSY-DGKVLIWKEE-NGRWSQIAVHAVH----S--------ASVNSVQWAPHEYGPLLLVASS-DG  123 (753)
T ss_dssp             EEECCTTSCSEEEEEET-TSCEEEEEEE-TTEEEEEEEECCC----S--------SCEEEEEECCGGGCSEEEEEET-TS
T ss_pred             EEecCCCCCCEEEEEeC-CCeEEEEECC-CCcccccccccCC----C--------CCeEEEEECCCCCCCEEEEEeC-CC
Confidence            567777  888877776 8889998774 3444333332211    1        44689999999  999887774 67


Q ss_pred             cEEEEEecC
Q 027522           81 DIRQYNIED   89 (222)
Q Consensus        81 sI~vf~i~d   89 (222)
                      .|.+|++..
T Consensus       124 ~I~vwdl~~  132 (753)
T 3jro_A          124 KVSVVEFKE  132 (753)
T ss_dssp             EEEEEECCS
T ss_pred             cEEEEEeec
Confidence            999999965

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.97  E-value=0.1  Score=47.51  Aligned_cols=73  Identities=14%  Similarity=0.113  Sum_probs=49.5

Q ss_pred             EEEcCCCCeEEEEeccC-ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALA-STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELs-stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      ++..++| .+||.+.+. ++|+++..  +|+ .+ ...-+.+......      ...+.|+++|||+.|+|..- .+.|.
T Consensus       142 vavD~~G-naYVt~s~~~~~I~rV~p--dG~-~~-~~~~~~~~~~~~~------~G~nGIv~~pdg~~Liv~~~-~g~L~  209 (334)
T 2p9w_A          142 SAQDRDG-NSYVAFALGMPAIARVSA--DGK-TV-STFAWESGNGGQR------PGYSGITFDPHSNKLIAFGG-PRALT  209 (334)
T ss_dssp             EEECTTS-CEEEEEEESSCEEEEECT--TSC-CE-EEEEECCCCSSSC------CSCSEEEEETTTTEEEEESS-SSSEE
T ss_pred             eEECCCC-CEEEeCCCCCCeEEEEeC--CCC-EE-eeeeecCCCcccc------cCcceEEEeCCCCEEEEEcC-CCeEE
Confidence            5667765 489999999 99998865  454 21 1111111100000      23589999999999999987 88999


Q ss_pred             EEEecC
Q 027522           84 QYNIED   89 (222)
Q Consensus        84 vf~i~d   89 (222)
                      .|++..
T Consensus       210 ~fD~~~  215 (334)
T 2p9w_A          210 AFDVSK  215 (334)
T ss_dssp             EEECSS
T ss_pred             EEcCCC
Confidence            999863

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=95.93  E-value=0.23  Score=44.65  Aligned_cols=69  Identities=13%  Similarity=0.106  Sum_probs=48.3

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|||+....++.+-.+.+|.+|.... +  .  .......  ..        .....+..||||++|++++ ..+.|.
T Consensus       154 ~v~~~p~~~~~las~s~Dg~v~iwD~~~-~--~--~~~~~~~--~~--------~~v~~v~wspdg~~lasgs-~dg~v~  217 (434)
T 2oit_A          154 DMKWNPTVPSMVAVCLADGSIAVLQVTE-T--V--KVCATLP--ST--------VAVTSVCWSPKGKQLAVGK-QNGTVV  217 (434)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEEESS-S--E--EEEEEEC--GG--------GCEEEEEECTTSSCEEEEE-TTSCEE
T ss_pred             EEEECCCCCCEEEEEECCCeEEEEEcCC-C--c--ceeeccC--CC--------CceeEEEEcCCCCEEEEEc-CCCcEE
Confidence            3689999666666666799999998742 3  1  1112211  11        3468899999999999888 567899


Q ss_pred             EEEec
Q 027522           84 QYNIE   88 (222)
Q Consensus        84 vf~i~   88 (222)
                      +|++.
T Consensus       218 iwd~~  222 (434)
T 2oit_A          218 QYLPT  222 (434)
T ss_dssp             EECTT
T ss_pred             EEccC
Confidence            99874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=95.88  E-value=0.12  Score=44.97  Aligned_cols=59  Identities=10%  Similarity=0.063  Sum_probs=36.6

Q ss_pred             cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcC--------CCCEEEEEeCCCCcEEEEEecC
Q 027522           20 LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISL--------DDRFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        20 LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp--------DgrfLYvSnRgh~sI~vf~i~d   89 (222)
                      -+.+|-.+..+ .+.....+.+..+    .|..     +...+|.+||        ||++| +|.-.+++|++|++..
T Consensus       109 ~d~~v~lw~~~-~~~~~~~~~~~~~----~gH~-----~~v~~v~~~p~~~~~~~~d~~~l-as~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A          109 QDNTVRLIITK-NETIITQHVLGGK----SGHH-----NFVNDIDIADVYSADNRLAEQVI-ASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             TTSCEEEEEEE-TTEEEEEEEECTT----TSCS-----SCEEEEEEEEEECTTCSEEEEEE-EEEETTSEEEEEEEET
T ss_pred             CCCcEEEEECC-CCccceeeeeccc----CCCC-----CceEEEEEccccccccCCCCCEE-EEEECCCeEEEEECCC
Confidence            46677777653 2333333333332    2221     4578999998        88888 5555688999999954

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=95.85  E-value=0.13  Score=44.75  Aligned_cols=108  Identities=13%  Similarity=0.044  Sum_probs=55.9

Q ss_pred             cCCCCeEEEEeccCceEEEEEeCC--CC-CeeEE----EEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            8 DPSKDIGFVGCALASTMVRFSKTQ--DG-SWNHE----VAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         8 hP~g~~aYvv~ELsstV~~~~~d~--~g-~~~~~----q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      .|+++.++..+. +.+|.++....  .+ .+...    ..+...|.....   .......+.+...+.++.+.++.-.++
T Consensus       264 ~~dg~~l~s~s~-d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~sgs~Dg  339 (393)
T 4gq1_A          264 GSDGSGILAMCK-SGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI---SLFPSLLGACPHPRYMDYFATAHSQHG  339 (393)
T ss_dssp             TTTTCEEEEECT-TSEEEEEEC-------------------CCSCSEEEE---CSSCCSSCCEECSSCTTEEEEEETTTT
T ss_pred             cCCCCEEEEEeC-CCCEEEEECccCCCCceEeeecCccccEEEccccccc---cccCcceeEEEccCCCCEEEEEECCCC
Confidence            488998877665 77888876421  11 11000    001111111000   001112233334455666667776788


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .|.+|++.. +....  . ..++                          +..    -+.+++||||++|.+|.
T Consensus       340 ~V~lwd~~~-~~~~~--~-~~~~--------------------------~~~----V~svafspdG~~LA~as  378 (393)
T 4gq1_A          340 LIQLINTYE-KDSNS--I-PIQL--------------------------GMP----IVDFCWHQDGSHLAIAT  378 (393)
T ss_dssp             EEEEEETTC-TTCCE--E-EEEC--------------------------SSC----EEEEEECTTSSEEEEEE
T ss_pred             EEEEEECCC-CcEEE--E-ecCC--------------------------CCc----EEEEEEcCCCCEEEEEe
Confidence            999999854 22222  1 1110                          122    58899999999999887

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.80  E-value=0.16  Score=44.00  Aligned_cols=79  Identities=11%  Similarity=0.115  Sum_probs=53.3

Q ss_pred             CCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCccc
Q 027522           54 PEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL  133 (222)
Q Consensus        54 ~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~  133 (222)
                      +.|....+.|..+||+..||+.+...+.|..++.   . +++..++..+|.                          .. 
T Consensus        23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~---~-g~v~~~i~l~g~--------------------------~D-   71 (255)
T 3qqz_A           23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTT---N-GDLIRTIPLDFV--------------------------KD-   71 (255)
T ss_dssp             TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEET---T-CCEEEEEECSSC--------------------------SS-
T ss_pred             CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeC---C-CCEEEEEecCCC--------------------------CC-
Confidence            3344568999999999999975444666555543   2 677788877542                          12 


Q ss_pred             CCCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCC
Q 027522          134 RGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSE  182 (222)
Q Consensus       134 ~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~  182 (222)
                         +--+++.++|+ ++|+.        +       ....++.++++..
T Consensus        72 ---~EGIa~~~~g~-~~vs~--------E-------~~~~l~~~~v~~~  101 (255)
T 3qqz_A           72 ---LETIEYIGDNQ-FVISD--------E-------RDYAIYVISLTPN  101 (255)
T ss_dssp             ---EEEEEECSTTE-EEEEE--------T-------TTTEEEEEEECTT
T ss_pred             ---hHHeEEeCCCE-EEEEE--------C-------CCCcEEEEEcCCC
Confidence               77788888885 66777        3       3466667776643

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.79  E-value=0.034  Score=48.68  Aligned_cols=64  Identities=17%  Similarity=0.293  Sum_probs=41.5

Q ss_pred             EEEcCCCCeEEEEe---ccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522            5 FLHDPSKDIGFVGC---ALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD   81 (222)
Q Consensus         5 ~afhP~g~~aYvv~---ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s   81 (222)
                      .+++|+++++|...   .-...|.+...+  |+-  .+.++--      .      .    +.+++||+.||.+..+...
T Consensus       109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d--Gs~--~~~lt~~------~------~----~~~~~~g~~iy~t~~g~~~  168 (302)
T 3s25_A          109 IYASLIGNYIYYLHYDTQTATSLYRIRID--GEE--KKKIKNH------Y------L----FTCNTSDRYFYYNNPKNGQ  168 (302)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEEEETT--SCC--CEEEESS------C------C----CCSEEETTEEEEECTTTCC
T ss_pred             cEEEEeCCEEEEEeecCCCCceEEEEECC--CCC--eEEEeCC------C------c----eEeeEECCEEEEEeCCCce
Confidence            46888999999887   445567777664  321  2222211      0      1    2358899999988887777


Q ss_pred             EEEEEec
Q 027522           82 IRQYNIE   88 (222)
Q Consensus        82 I~vf~i~   88 (222)
                      |.+.+++
T Consensus       169 Iy~~~l~  175 (302)
T 3s25_A          169 LYRYDTA  175 (302)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            7777663

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=95.74  E-value=0.26  Score=41.53  Aligned_cols=75  Identities=11%  Similarity=-0.037  Sum_probs=42.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      .++.|+|+.++ .  -+..|..+..  +|+.  +-.+..+ ..          .....+..++||+.|++.+..  .-++
T Consensus        42 ~~~~pdG~ilv-s--~~~~V~~~d~--~G~~--~W~~~~~-~~----------~~~~~~~~~~dG~~lv~~~~~--~~~v  101 (276)
T 3no2_A           42 VAATKAGEILF-S--YSKGAKMITR--DGRE--LWNIAAP-AG----------CEMQTARILPDGNALVAWCGH--PSTI  101 (276)
T ss_dssp             EEECTTSCEEE-E--CBSEEEEECT--TSCE--EEEEECC-TT----------CEEEEEEECTTSCEEEEEEST--TEEE
T ss_pred             eEECCCCCEEE-e--CCCCEEEECC--CCCE--EEEEcCC-CC----------ccccccEECCCCCEEEEecCC--CCEE
Confidence            35678887655 2  2455666543  4542  2223322 10          123567889999999887642  3455


Q ss_pred             EEecCCCCCeEEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWV  101 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~  101 (222)
                      +.+ ++ .++++-++..
T Consensus       102 ~~v-d~-~Gk~l~~~~~  116 (276)
T 3no2_A          102 LEV-NM-KGEVLSKTEF  116 (276)
T ss_dssp             EEE-CT-TSCEEEEEEE
T ss_pred             EEE-eC-CCCEEEEEec
Confidence            666 33 4777665554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=95.67  E-value=0.43  Score=45.28  Aligned_cols=55  Identities=5%  Similarity=0.063  Sum_probs=33.0

Q ss_pred             EEEcCCCC-eEEEEeccCc---eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEe
Q 027522            5 FLHDPSKD-IGFVGCALAS---TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN   76 (222)
Q Consensus         5 ~afhP~g~-~aYvv~ELss---tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSn   76 (222)
                      +.|+|||+ .||...+-++   +|.++.. ++|+....   .+...            ....+..| ||+.||.+.
T Consensus       134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl-~tg~~~~~---~~~~~------------k~~~~~Ws-Dg~~l~y~~  192 (693)
T 3iuj_A          134 LSFSRDGRILAYSLSLAGSDWREIHLMDV-ESKQPLET---PLKDV------------KFSGISWL-GNEGFFYSS  192 (693)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEEEET-TTCSEEEE---EEEEE------------ESCCCEEE-TTTEEEEEE
T ss_pred             EEECCCCCEEEEEEecCCCceEEEEEEEC-CCCCCCcc---ccCCc------------eeccEEEe-CCCEEEEEE
Confidence            57999998 6788888775   3444444 35654221   22110            01456799 999776554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.67  E-value=0.31  Score=42.28  Aligned_cols=102  Identities=12%  Similarity=0.057  Sum_probs=64.2

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC--CCC
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW--LHG   80 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR--gh~   80 (222)
                      .+.++|+++++..... +++|.++.... .......+...       +     ..+....+..+|++..+.++.-  .++
T Consensus       235 ~~~~~~~g~~l~s~~~-D~~v~i~~~~~~~~~~~~~~~~~-------~-----~~~~V~~~~~~p~~~~~la~~~gs~D~  301 (420)
T 4gga_A          235 GLRWAPDGRHLASGGN-DNLVNVWPSAPGEGGWVPLQTFT-------Q-----HQGAVKAVAWCPWQSNVLATGGGTSDR  301 (420)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEESSCCSSCSCCSEEEC-------C-----CSSCEEEEEECTTCTTEEEEEECTTTC
T ss_pred             eeeecCCCCeeeeeec-cccceEEeeccccccceeeeeec-------c-----cCCceeeeeeCCCcccEEEEEeecCCC
Confidence            3567888887776655 67777776531 11111111111       0     1144678999998887776643  357


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .|.+|++..   +++...+...                            ..    ...+.++|+++.|+++.
T Consensus       302 ~I~iwd~~t---~~~~~~~~~~----------------------------~~----v~~~~~~~~~~~lv~~s  339 (420)
T 4gga_A          302 HIRIWNVCS---GACLSAVDAH----------------------------SQ----VCSILWSPHYKELISGH  339 (420)
T ss_dssp             EEEEEETTT---TEEEEEEECS----------------------------SC----EEEEEEETTTTEEEEEE
T ss_pred             EEEEEeCCc---cccceeeccc----------------------------cc----eeeeeecCCCCeEEEEE
Confidence            899998843   5565444431                            22    66789999999999886

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=95.65  E-value=0.21  Score=47.47  Aligned_cols=31  Identities=10%  Similarity=0.059  Sum_probs=23.1

Q ss_pred             ceeEEEEcCCCCEEEEEeC-C---CCcEEEEEecC
Q 027522           59 LITDFLISLDDRFLYFSNW-L---HGDIRQYNIED   89 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnR-g---h~sI~vf~i~d   89 (222)
                      ....+.+|||||+|+++.+ .   ...|.+++++.
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~  303 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN  303 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence            3578899999999886654 2   45788888854

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.64  E-value=0.11  Score=43.46  Aligned_cols=62  Identities=15%  Similarity=0.245  Sum_probs=38.8

Q ss_pred             EEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCC----CEEEEEeCCCCcEEEEEecC
Q 027522           15 FVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDD----RFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        15 Yvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDg----rfLYvSnRgh~sI~vf~i~d   89 (222)
                      ++..-.+.+|.+|.....+.+...+.   +    .+.     .....++.+|||+    ++| +|.-..+.|.+|++.+
T Consensus       182 l~sgs~D~~v~lWd~~~~~~~~~~~~---l----~~h-----~~~V~~v~~sp~~~~~~~~l-as~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          182 FASGGCDNLIKLWKEEEDGQWKEEQK---L----EAH-----SDWVRDVAWAPSIGLPTSTI-ASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             EECCBTTSBCCEEEECTTSCEEEEEC---C----BCC-----SSCEEEEECCCCSSCSCCEE-EEEETTCEEEEEECSS
T ss_pred             EEEecCCCeEEEEEeCCCCccceeee---c----ccC-----CCceEEEEecCCCCCCCceE-EEEcCCCeEEEEEccC
Confidence            44444577888887643344443322   1    111     1346899999997    555 5555688999999964

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=95.64  E-value=0.39  Score=41.61  Aligned_cols=57  Identities=7%  Similarity=-0.025  Sum_probs=39.7

Q ss_pred             EEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEE
Q 027522           62 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQ  141 (222)
Q Consensus        62 dI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~  141 (222)
                      -..+++++++|+++.. .+.|.+|++..   ++.+.....                             .  .+....++
T Consensus       273 v~~~~~~~~~l~~~~~-d~~i~vwd~~~---~~~~~~~~~-----------------------------~--~~~v~~~~  317 (464)
T 3v7d_B          273 VRTVSGHGNIVVSGSY-DNTLIVWDVAQ---MKCLYILSG-----------------------------H--TDRIYSTI  317 (464)
T ss_dssp             EEEEEEETTEEEEEET-TSCEEEEETTT---TEEEEEECC-----------------------------C--SSCEEEEE
T ss_pred             EEEEcCCCCEEEEEeC-CCeEEEEECCC---CcEEEEecC-----------------------------C--CCCEEEEE
Confidence            3456999999988774 67899999843   444332221                             0  01257899


Q ss_pred             ECCCCCEEEEEe
Q 027522          142 LSLDGKRLYVTN  153 (222)
Q Consensus       142 lspdGk~LyvaN  153 (222)
                      ++|+|++|+++.
T Consensus       318 ~~~~~~~l~sg~  329 (464)
T 3v7d_B          318 YDHERKRCISAS  329 (464)
T ss_dssp             EETTTTEEEEEE
T ss_pred             EcCCCCEEEEEe
Confidence            999999999886

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=95.62  E-value=0.14  Score=48.24  Aligned_cols=30  Identities=7%  Similarity=0.081  Sum_probs=21.5

Q ss_pred             ceeEEEEcCCCCEEE-EEeCCC---CcEEEEEec
Q 027522           59 LITDFLISLDDRFLY-FSNWLH---GDIRQYNIE   88 (222)
Q Consensus        59 ~~adI~iSpDgrfLY-vSnRgh---~sI~vf~i~   88 (222)
                      ....+.+||||++|. .+.+..   ..|.+++++
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            357899999999875 444432   468888874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.34  E-value=0.5  Score=40.97  Aligned_cols=62  Identities=13%  Similarity=0.087  Sum_probs=40.2

Q ss_pred             eeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCee
Q 027522           60 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM  139 (222)
Q Consensus        60 ~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~  139 (222)
                      ...+..  ++++|+++. ..+.|.+|++..   ++++..+....                          .....+....
T Consensus       365 v~~~~~--~~~~l~s~~-~dg~v~iwd~~~---~~~~~~~~~~~--------------------------~~~~~~~v~~  412 (445)
T 2ovr_B          365 VTCLQF--NKNFVITSS-DDGTVKLWDLKT---GEFIRNLVTLE--------------------------SGGSGGVVWR  412 (445)
T ss_dssp             EEEEEE--CSSEEEEEE-TTSEEEEEETTT---CCEEEEEEECT--------------------------TGGGTCEEEE
T ss_pred             EEEEEE--CCCEEEEEe-CCCeEEEEECCC---Cceeeeeeccc--------------------------cCCCCceEEE
Confidence            455555  578887766 578999999853   55655543210                          0011122688


Q ss_pred             EEECCCCCEEEEEe
Q 027522          140 IQLSLDGKRLYVTN  153 (222)
Q Consensus       140 ~~lspdGk~LyvaN  153 (222)
                      ++++|+|..|.++.
T Consensus       413 ~~~s~~~~~la~~~  426 (445)
T 2ovr_B          413 IRASNTKLVCAVGS  426 (445)
T ss_dssp             EEECSSEEEEEEEC
T ss_pred             EEecCCEEEEEEcc
Confidence            99999999998887

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.25  E-value=0.27  Score=47.55  Aligned_cols=55  Identities=18%  Similarity=0.170  Sum_probs=32.5

Q ss_pred             EEEc-CCCC-eEEEEeccCc---eEEEEEeCCCC-CeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEe
Q 027522            5 FLHD-PSKD-IGFVGCALAS---TMVRFSKTQDG-SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN   76 (222)
Q Consensus         5 ~afh-P~g~-~aYvv~ELss---tV~~~~~d~~g-~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSn   76 (222)
                      +.|+ |||+ .||+..+-++   +|+++..+ +| +.        ++....        ...+.+..||||+.||.+.
T Consensus       179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~-~g~~~--------l~~~~~--------~~~~~~~WspDg~~l~y~~  239 (751)
T 2xe4_A          179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRIS-DPSQT--------IADKVS--------GTNGEIVWGPDHTSLFYVT  239 (751)
T ss_dssp             EEECTTTTCEEEEEEESSSSSCEEEEEEETT-CTTCC--------CCCCEE--------EECSCCEECSSTTEEEEEE
T ss_pred             eEecCCCCCEEEEEEeCCCCceEEEEEEECC-CCCEe--------CCcccc--------CceeeEEEecCCCEEEEEE
Confidence            5789 9997 6777776554   36666543 34 31        111111        1125788999997666554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=95.06  E-value=0.31  Score=45.85  Aligned_cols=73  Identities=11%  Similarity=0.003  Sum_probs=41.5

Q ss_pred             EEEcCCCCeEEEEecc------------CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEE
Q 027522            5 FLHDPSKDIGFVGCAL------------ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFL   72 (222)
Q Consensus         5 ~afhP~g~~aYvv~EL------------sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfL   72 (222)
                      ++|+|||+.+|....-            ...|+++... ++.-+...+...+ .   .      +.....+.+|||||+|
T Consensus       173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~-t~~~~~~lv~~~~-~---~------~~~~~~~~~SpDG~~l  241 (695)
T 2bkl_A          173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLG-TEPSKDTVVHERT-G---D------PTTFLQSDLSRDGKYL  241 (695)
T ss_dssp             CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETT-SCGGGCEEEECCC-C---C------TTCEEEEEECTTSCCE
T ss_pred             eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECC-CCchhceEEEecC-C---C------CEEEEEEEECCCCCEE
Confidence            6899999877666541            2337777653 2322212221111 1   0      1235788999999999


Q ss_pred             EEEeCCC-CcEEEEEec
Q 027522           73 YFSNWLH-GDIRQYNIE   88 (222)
Q Consensus        73 YvSnRgh-~sI~vf~i~   88 (222)
                      .++.... +...+|-++
T Consensus       242 ~~~~~~~~~~~~l~~~~  258 (695)
T 2bkl_A          242 FVYILRGWSENDVYWKR  258 (695)
T ss_dssp             EEEEEETTTEEEEEEEC
T ss_pred             EEEEeCCCCceEEEEEc
Confidence            8766544 455555553

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.01  E-value=0.062  Score=47.05  Aligned_cols=63  Identities=16%  Similarity=0.149  Sum_probs=40.0

Q ss_pred             EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC-cEEE
Q 027522            6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG-DIRQ   84 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~-sI~v   84 (222)
                      +++|+++.+|-...-..+|.+...+  |.-  .+++.      .+.         ..+.++|+|++||-+.|..+ .|.+
T Consensus       151 ~~~~~g~~iy~t~~g~~~Iy~~~l~--g~~--~~~l~------~~~---------~~~~~~P~g~~iy~t~~~~~~~I~~  211 (302)
T 3s25_A          151 TCNTSDRYFYYNNPKNGQLYRYDTA--SQS--EALFY------DCN---------CYKPVVLDDTNVYYMDVNRDNAIVH  211 (302)
T ss_dssp             CSEEETTEEEEECTTTCCEEEEETT--TTE--EEEEE------CSC---------EEEEEEEETTEEEEEEGGGTTEEEE
T ss_pred             EeeEECCEEEEEeCCCceEEEEECC--CCC--EEEEe------CCC---------ccceeeecCCEEEEEEcCCCcEEEE
Confidence            4678899999888756778888753  332  22331      111         12346799999999999754 3444


Q ss_pred             EEe
Q 027522           85 YNI   87 (222)
Q Consensus        85 f~i   87 (222)
                      -++
T Consensus       212 ~~l  214 (302)
T 3s25_A          212 VNI  214 (302)
T ss_dssp             ECS
T ss_pred             EEC
Confidence            433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=94.88  E-value=1  Score=42.80  Aligned_cols=30  Identities=17%  Similarity=0.183  Sum_probs=21.2

Q ss_pred             ceeEEEEcCCCCEE-EEEeCCCC---cEEEEEec
Q 027522           59 LITDFLISLDDRFL-YFSNWLHG---DIRQYNIE   88 (222)
Q Consensus        59 ~~adI~iSpDgrfL-YvSnRgh~---sI~vf~i~   88 (222)
                      ....+.+||||++| |++.++..   .|.+++++
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~  197 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVA  197 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETT
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence            35789999999987 45555322   48888774

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=94.63  E-value=0.24  Score=39.87  Aligned_cols=70  Identities=10%  Similarity=0.113  Sum_probs=49.3

Q ss_pred             eEEEcCCCCeEEEEec-cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCA-LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~E-LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      ...|+|+++..++..- -+++|.+|... +++  ..+++       .|..     +....|.+||||++|..+. .+++|
T Consensus       245 ~~~~~~~~~~~~~~sg~~d~~i~iwd~~-~~~--~~~~l-------~gH~-----~~V~~l~~spdg~~l~S~s-~D~~v  308 (318)
T 4ggc_A          245 SILWSPHYKELISGHGFAQNQLVIWKYP-TMA--KVAEL-------KGHT-----SRVLSLTMSPDGATVASAA-ADETL  308 (318)
T ss_dssp             EEEEETTTTEEEEEECTTTCCEEEEETT-TCC--EEEEE-------CCCS-----SCEEEEEECTTSSCEEEEE-TTTEE
T ss_pred             eeeecccccceEEEEEcCCCEEEEEECC-CCc--EEEEE-------cCCC-----CCEEEEEEcCCCCEEEEEe-cCCeE
Confidence            5688999999888764 46788888764 332  22222       1110     4468999999999997655 57899


Q ss_pred             EEEEecC
Q 027522           83 RQYNIED   89 (222)
Q Consensus        83 ~vf~i~d   89 (222)
                      ++|++.+
T Consensus       309 ~iWd~~~  315 (318)
T 4ggc_A          309 RLWRCFE  315 (318)
T ss_dssp             EEECCSC
T ss_pred             EEEECCC
Confidence            9999954

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=93.81  E-value=0.77  Score=44.32  Aligned_cols=72  Identities=8%  Similarity=0.024  Sum_probs=39.6

Q ss_pred             EEEcCCCCeEEEEeccC----ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            5 FLHDPSKDIGFVGCALA----STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELs----stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      ++|+|||+.+|.+..-.    ..|++.... ++.-+...+..-+.           +.....+.+|||||+|+++.+.++
T Consensus       226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lg-t~~~~~~lv~~~~~-----------~~~~~~~~~SpDg~~l~~~~~~~~  293 (751)
T 2xe4_A          226 IVWGPDHTSLFYVTKDETLRENKVWRHVMG-KLQSEDVCLYEEHN-----------PLFSAFMYKAADTNTLCIGSQSPE  293 (751)
T ss_dssp             CEECSSTTEEEEEEECTTCCEEEEEEEETT-SCGGGCEEEEECCC-----------TTCEEEEEECTTSSEEEEEEECSS
T ss_pred             EEEecCCCEEEEEEECCCCCCCEEEEEECC-CCchhcEEEEecCC-----------CceEEEEEECCCCCEEEEEecCCC
Confidence            67899997666655421    346655542 22111111211111           023468899999999998776543


Q ss_pred             --cEEEEEec
Q 027522           81 --DIRQYNIE   88 (222)
Q Consensus        81 --sI~vf~i~   88 (222)
                        .|.+++++
T Consensus       294 ~~~l~~~d~~  303 (751)
T 2xe4_A          294 TAEVHLLDLR  303 (751)
T ss_dssp             CEEEEEEESS
T ss_pred             CceEEEEECC
Confidence              45555553

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=93.44  E-value=0.84  Score=42.48  Aligned_cols=69  Identities=16%  Similarity=0.013  Sum_probs=38.9

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEE--EEcCCCCEEEEEeCCCCcE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDF--LISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI--~iSpDgrfLYvSnRgh~sI   82 (222)
                      ++|+|++ .+.+.+ .+++|.+|... ++.. ..+..       .+..     .....|  ..|+||+.+.+|+-.+++|
T Consensus       272 v~~s~~~-~lasgs-~DgtV~lWD~~-~~~~-~~~~~-------~~H~-----~~V~sv~~~~s~~g~~~laS~S~D~tv  335 (524)
T 2j04_B          272 FDFLSPT-TVVCGF-KNGFVAEFDLT-DPEV-PSFYD-------QVHD-----SYILSVSTAYSDFEDTVVSTVAVDGYF  335 (524)
T ss_dssp             EEESSSS-EEEEEE-TTSEEEEEETT-BCSS-CSEEE-------ECSS-----SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred             EEecCCC-eEEEEe-CCCEEEEEECC-CCCC-ceEEe-------eccc-----ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence            5677754 444443 47778777653 2211 01111       1110     335666  5688884555666678999


Q ss_pred             EEEEecC
Q 027522           83 RQYNIED   89 (222)
Q Consensus        83 ~vf~i~d   89 (222)
                      ++|++.+
T Consensus       336 klWD~~~  342 (524)
T 2j04_B          336 YIFNPKD  342 (524)
T ss_dssp             EEECGGG
T ss_pred             EEEECCC
Confidence            9999854

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=93.06  E-value=1.7  Score=39.92  Aligned_cols=104  Identities=15%  Similarity=0.252  Sum_probs=65.4

Q ss_pred             ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEc---CC----CCEEEEEeCCCCcEEEEEecCCCCCe
Q 027522           22 STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLIS---LD----DRFLYFSNWLHGDIRQYNIEDPKNPV   94 (222)
Q Consensus        22 stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iS---pD----grfLYvSnRgh~sI~vf~i~d~~~~~   94 (222)
                      .+|.+|... ++..+..+++.+|+.-+...      +...+|+|.   |+    +.|+|++.-+...|.||++.....-+
T Consensus       123 pkLv~~DL~-t~~~~li~~y~~p~~~~~~~------S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swR  195 (381)
T 3q6k_A          123 PAIVAYDLK-QPNYPEVVRYYFPTRLVEKP------TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWN  195 (381)
T ss_dssp             CEEEEEESS-STTCCEEEEEECCGGGCCCG------GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ceEEEEECC-CCCceeEEEEECCHHhcccC------CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEE
Confidence            457777764 34235678888876544332      567899998   33    78999999999999999995421111


Q ss_pred             EEEEEEecceeecCCceeeeeCCCCCCCCC---CccccCccc--CCCCeeEEECCC----CCEEEEEe
Q 027522           95 LTGQIWVGGLFRKGSPVVAVTDDGQPYQSD---VPEVQGHRL--RGGPQMIQLSLD----GKRLYVTN  153 (222)
Q Consensus        95 L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~---~~~v~G~~~--~ggPr~~~lspd----Gk~LyvaN  153 (222)
                          +.- ..+                +|+   ...+.|+.+  ..|---|+|||+    +++||..-
T Consensus       196 ----v~~-~~~----------------~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p  242 (381)
T 3q6k_A          196 ----VTH-PTF----------------KAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLA  242 (381)
T ss_dssp             ----EEC-GGG----------------SCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEE
T ss_pred             ----Ecc-CCC----------------ccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEE
Confidence                111 111                121   012345433  345667899999    89999773

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=92.75  E-value=0.27  Score=45.85  Aligned_cols=71  Identities=7%  Similarity=-0.074  Sum_probs=41.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+++..++.+-.+.+|-+|... +++..  +++.-   ...+       .....|..|||++.| ++.-..++|.+
T Consensus       316 ~~~s~~g~~~laS~S~D~tvklWD~~-~~~~~--~~~~~---~~~~-------~~v~~v~fsp~~~~l-~s~~~d~tv~l  381 (524)
T 2j04_B          316 TAYSDFEDTVVSTVAVDGYFYIFNPK-DIATT--KTTVS---RFRG-------SNLVPVVYCPQIYSY-IYSDGASSLRA  381 (524)
T ss_dssp             EECCTTSCCEEEEEETTSEEEEECGG-GHHHH--CEEEE---ECSC-------CSCCCEEEETTTTEE-EEECSSSEEEE
T ss_pred             EEcCCCCCeEEEEeccCCeEEEEECC-CCCcc--ccccc---cccc-------CcccceEeCCCcCeE-EEeCCCCcEEE
Confidence            35777774555555568888888653 22211  11110   0000       113568899999985 55546778999


Q ss_pred             EEecC
Q 027522           85 YNIED   89 (222)
Q Consensus        85 f~i~d   89 (222)
                      |++..
T Consensus       382 wd~~~  386 (524)
T 2j04_B          382 VPSRA  386 (524)
T ss_dssp             EETTC
T ss_pred             EECcc
Confidence            99854

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.11  E-value=2.2  Score=39.65  Aligned_cols=63  Identities=19%  Similarity=0.275  Sum_probs=38.2

Q ss_pred             EEEcCC---CCeEEEEec--c----------CceEEEEEeCCC--CC--ee-EEEEEEecCcccccccCCCCCCceeEEE
Q 027522            5 FLHDPS---KDIGFVGCA--L----------ASTMVRFSKTQD--GS--WN-HEVAISVKSLKVQNWILPEMPGLITDFL   64 (222)
Q Consensus         5 ~afhP~---g~~aYvv~E--L----------sstV~~~~~d~~--g~--~~-~~q~is~~p~~~~g~~~~~~~~~~adI~   64 (222)
                      ++|||+   ..++||..-  -          .+.|.+|.++.+  +.  +. .+.++.+++..  +.      -....|+
T Consensus        74 ia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~--~~------H~g~~l~  145 (463)
T 2wg3_C           74 LAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH--RK------HLGGQLL  145 (463)
T ss_dssp             EEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS--SS------SCEEEEE
T ss_pred             eEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC--Cc------ccCCcEe
Confidence            799997   578888742  1          146888887532  22  21 22333443221  11      2358999


Q ss_pred             EcCCCCEEEEEe
Q 027522           65 ISLDDRFLYFSN   76 (222)
Q Consensus        65 iSpDgrfLYvSn   76 (222)
                      ++||| +||++.
T Consensus       146 fgpDG-~LYv~~  156 (463)
T 2wg3_C          146 FGPDG-FLYIIL  156 (463)
T ss_dssp             ECTTS-CEEEEE
T ss_pred             ECCCC-cEEEEe
Confidence            99999 799985

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=92.10  E-value=4.3  Score=38.34  Aligned_cols=30  Identities=23%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCEE-EEEeCCC---CcEEEEEec
Q 027522           59 LITDFLISLDDRFL-YFSNWLH---GDIRQYNIE   88 (222)
Q Consensus        59 ~~adI~iSpDgrfL-YvSnRgh---~sI~vf~i~   88 (222)
                      ....+.+||||++| |++.++.   -.|.+++++
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~  163 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE  163 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECC
Confidence            45788999999965 5555533   357777763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=89.63  E-value=11  Score=34.38  Aligned_cols=79  Identities=13%  Similarity=0.059  Sum_probs=41.4

Q ss_pred             CCCCeEEEEeccCceEEEEEeCCCCCeeEEEEE--------EecCcc-c-------ccccCCCCCCceeEEEEcCC----
Q 027522            9 PSKDIGFVGCALASTMVRFSKTQDGSWNHEVAI--------SVKSLK-V-------QNWILPEMPGLITDFLISLD----   68 (222)
Q Consensus         9 P~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~i--------s~~p~~-~-------~g~~~~~~~~~~adI~iSpD----   68 (222)
                      +.++..-++.+-..+|..+.....-+|+...+.        .+.+-+ .       -|. +.  -+....|.+|||    
T Consensus        50 ~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~--~~~v~sla~spd~~~~  126 (356)
T 2w18_A           50 AGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN-LE--IREIRALFCSSDDESE  126 (356)
T ss_dssp             ---CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS-SS--EEEEEEECC------C
T ss_pred             CCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeecc-cc--ccceEEEEECCCcccc
Confidence            456666677666688888877432245544333        333222 0       010 00  023578999999    


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCCeEE
Q 027522           69 DRFLYFSNWLHGDIRQYNIEDPKNPVLT   96 (222)
Q Consensus        69 grfLYvSnRgh~sI~vf~i~d~~~~~L~   96 (222)
                      +++|..+.   ..++++.+.   +++|+
T Consensus       127 ~~~l~s~g---~~~~v~~l~---~g~lv  148 (356)
T 2w18_A          127 KQVLLKSG---NIKAVLGLT---KRRLV  148 (356)
T ss_dssp             CEEEEEEE---EEEEEEEET---TTEEE
T ss_pred             ccEEEeCC---CeEEEEecC---CCcEE
Confidence            98887754   458899883   36663

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=88.85  E-value=6.7  Score=40.54  Aligned_cols=105  Identities=11%  Similarity=0.085  Sum_probs=66.5

Q ss_pred             cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC------CCEEEEEeCCCCcEEEEEecCCCCC
Q 027522           20 LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD------DRFLYFSNWLHGDIRQYNIEDPKNP   93 (222)
Q Consensus        20 LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD------grfLYvSnRgh~sI~vf~i~d~~~~   93 (222)
                      .+++|..|..+ +|.+...+...+             +...+.+.+++.      .+|+-|.+|..++|++|.+.+   .
T Consensus       530 ~g~~l~~fel~-~~~L~~~~~~~l-------------~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~---l  592 (1158)
T 3ei3_A          530 VGRALYYLQIH-PQELRQISHTEM-------------EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS---F  592 (1158)
T ss_dssp             ETTEEEEEEEE-TTEEEEEEEEEC-------------SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT---C
T ss_pred             ECCEEEEEEee-CCceeeecccCC-------------CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC---C
Confidence            46677777665 355544333222             234577777753      489999999899999999943   4


Q ss_pred             eEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCC--CEEEEEeCCCCccccccccccccCC
Q 027522           94 VLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDG--KRLYVTNSLFSAWDCQFYPELKEKG  171 (222)
Q Consensus        94 ~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdG--k~LyvaNsl~~~wd~Q~yp~~~s~~  171 (222)
                      ..+....+++.                          .    -||.+.+..-+  -+|+++-                .+
T Consensus       593 ~~~~~~~L~~~--------------------------~----~p~si~l~~~~~~~~L~igl----------------~d  626 (1158)
T 3ei3_A          593 ELLHKEMLGGE--------------------------I----IPRSILMTTFESSHYLLCAL----------------GD  626 (1158)
T ss_dssp             CEEEEEECCSS--------------------------C----CEEEEEEEEETTEEEEEEEE----------------TT
T ss_pred             CeEEEEECCCC--------------------------C----CCcEEEEEEeCCCcEEEEEe----------------CC
Confidence            44433333211                          1    27766654322  3666775                36


Q ss_pred             cEEEEEEeeCCCCCee
Q 027522          172 SHMLQIDVNSEKGGMA  187 (222)
Q Consensus       172 ~~i~~~dvd~~~G~l~  187 (222)
                      +.++++.+|+.+|.|.
T Consensus       627 G~l~~~~~d~~tg~l~  642 (1158)
T 3ei3_A          627 GALFYFGLNIETGLLS  642 (1158)
T ss_dssp             SEEEEEEECTTTCCEE
T ss_pred             CeEEEEEEcCCCCccc
Confidence            7788888999999985

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=88.76  E-value=12  Score=35.85  Aligned_cols=88  Identities=11%  Similarity=0.139  Sum_probs=47.1

Q ss_pred             eEEEcCCCCeEEEEeccC------------------ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEE
Q 027522            4 RFLHDPSKDIGFVGCALA------------------STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLI   65 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELs------------------stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~i   65 (222)
                      .++|+|++..+|+...-.                  ++|..+.. .+|+....  ..+.+.+  .|... .++.+.-+-+
T Consensus       247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~-~TG~~~W~--~~~~~~d--~wd~~-~~~~p~l~~~  320 (677)
T 1kb0_A          247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP-DTGKYKWH--YQETPGD--NWDYT-STQPMILADI  320 (677)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT-TTCCEEEE--EESSTTC--CSCCC-CCSCCEEEEE
T ss_pred             ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC-CCCCEEEE--EecCCCc--ccccc-cCCCcEEEec
Confidence            368999999999987532                  24666654 35653322  2333321  11111 0122222233


Q ss_pred             cCCC---CEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 027522           66 SLDD---RFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV  101 (222)
Q Consensus        66 SpDg---rfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~  101 (222)
                      ..||   +.||+..+ .+.|.++|.   .+++++.++..
T Consensus       321 ~~dG~~~~~l~~~~~-~G~l~~lD~---~tG~~l~~~~~  355 (677)
T 1kb0_A          321 KIAGKPRKVILHAPK-NGFFFVLDR---TNGKFISAKNF  355 (677)
T ss_dssp             EETTEEEEEEEECCT-TSEEEEEET---TTCCEEEEEES
T ss_pred             ccCCcEeeEEEEECC-CCEEEEEEC---CCCCEeccccc
Confidence            3488   56776664 566777754   45777666554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=87.49  E-value=7  Score=36.64  Aligned_cols=16  Identities=19%  Similarity=-0.060  Sum_probs=13.4

Q ss_pred             EEEEcCCCCEEEEEeC
Q 027522           62 DFLISLDDRFLYFSNW   77 (222)
Q Consensus        62 dI~iSpDgrfLYvSnR   77 (222)
                      .+.++|+.+.||+.+.
T Consensus       390 ~~a~dp~~g~~yv~~~  405 (571)
T 2ad6_A          390 VDSYDPESRTLYAGLN  405 (571)
T ss_dssp             BCEEETTTTEEEEEEE
T ss_pred             CceECCCCCEEEEEch
Confidence            4678999999999863

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=86.93  E-value=17  Score=33.97  Aligned_cols=89  Identities=13%  Similarity=0.093  Sum_probs=45.4

Q ss_pred             EEEcCCCCeEEEEecc---------------CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCC
Q 027522            5 FLHDPSKDIGFVGCAL---------------ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDD   69 (222)
Q Consensus         5 ~afhP~g~~aYvv~EL---------------sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDg   69 (222)
                      ++++|+...+|+.+.-               +++|..+..+ +|+..-.  ..+.+.+  .|... ..+.+.-+-...||
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~-tG~~~W~--~~~~~~d--~~d~~-~~~~p~l~~~~~~G  313 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD-TGMAKWG--YQKTPHD--EWDFA-GVNQMVLTDQPVNG  313 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT-TCCEEEE--EESSTTC--SSCCC-CCCCCEEEEEEETT
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecC-CCcEEEE--ecCCCCc--ccccc-cCCCCEEEecccCC
Confidence            4678888899998752               2467777653 5653322  2222211  11110 00122222333688


Q ss_pred             C---EEEEEeCCCCcEEEEEecCCCCCeEEEEEEecc
Q 027522           70 R---FLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG  103 (222)
Q Consensus        70 r---fLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG  103 (222)
                      +   .||+.++ .+.+.+++.   .+++++-++..++
T Consensus       314 ~~~~~v~~~~~-~G~l~~lD~---~tG~~~w~~~~~~  346 (571)
T 2ad6_A          314 KMTPLLSHIDR-NGILYTLNR---ENGNLIVAEKVDP  346 (571)
T ss_dssp             EEEEEEEEECT-TSEEEEEET---TTCCEEEEEESST
T ss_pred             cEEEEEEEeCC-CcEEEEEEC---CCCCEEeeecccC
Confidence            5   4556554 455555543   4577776666543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=83.71  E-value=20  Score=30.74  Aligned_cols=27  Identities=15%  Similarity=0.298  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522           60 ITDFLISLDDRFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        60 ~adI~iSpDgrfLYvSnRgh~sI~vf~i~d   89 (222)
                      ...|..  |+++|+++.. .+.|.+|++..
T Consensus       259 v~~~~~--~~~~l~s~~~-dg~i~vwd~~~  285 (435)
T 1p22_A          259 VNVVDF--DDKYIVSASG-DRTIKVWNTST  285 (435)
T ss_dssp             EEEEEE--ETTEEEEEET-TSEEEEEETTT
T ss_pred             EEEEEe--CCCEEEEEeC-CCeEEEEECCc
Confidence            344444  8999987774 78899999843

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=82.58  E-value=19  Score=34.30  Aligned_cols=15  Identities=7%  Similarity=0.268  Sum_probs=12.8

Q ss_pred             EEEEcCCCCEEEEEe
Q 027522           62 DFLISLDDRFLYFSN   76 (222)
Q Consensus        62 dI~iSpDgrfLYvSn   76 (222)
                      .+.+||+++.||+..
T Consensus       397 ~~a~dp~~~~~yv~~  411 (677)
T 1kb0_A          397 PMSFNPQTGLVYLPA  411 (677)
T ss_dssp             CCEEETTTTEEEEEE
T ss_pred             CceEcCCCCEEEEeC
Confidence            578899999999964

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=82.35  E-value=27  Score=31.79  Aligned_cols=30  Identities=7%  Similarity=0.221  Sum_probs=23.8

Q ss_pred             eeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522           60 ITDFLISLDDRFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        60 ~adI~iSpDgrfLYvSnRgh~sI~vf~i~d   89 (222)
                      +..+.+.+..-.||++.-.++.|.+|+...
T Consensus       277 ~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          277 AIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             cceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            456777655568999999999999998753

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=82.17  E-value=6.6  Score=38.30  Aligned_cols=64  Identities=22%  Similarity=0.236  Sum_probs=40.9

Q ss_pred             CceeEEEEcCCCCEEEE-EeC---------CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCcc
Q 027522           58 GLITDFLISLDDRFLYF-SNW---------LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPE  127 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYv-SnR---------gh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~  127 (222)
                      +.+=+|.++++|+ ||+ +--         +++.=.+|.+ ++.++++..-+ .+                    |    
T Consensus       476 nsPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~-dp~tGel~~fl-~~--------------------P----  528 (592)
T 4a9v_A          476 NSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCA-DPATGEIRRFM-VG--------------------P----  528 (592)
T ss_dssp             CCEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEE-CTTTCCEEEEE-EC--------------------C----
T ss_pred             CCCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEE-eCCCCeEEEEE-eC--------------------C----
Confidence            5677999999996 566 432         1222256666 45556552222 11                    0    


Q ss_pred             ccCcccCCCCeeEEECCCCCEEEEEe
Q 027522          128 VQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus       128 v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                       .|..    |.-+++|||+|+|||+.
T Consensus       529 -~~aE----pnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          529 -IGCE----VTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             -TTCE----EEEEEECTTSSEEEEEE
T ss_pred             -CCcc----ccCCEECCCCCEEEEEE
Confidence             1233    78899999999999998

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=81.85  E-value=24  Score=30.23  Aligned_cols=66  Identities=12%  Similarity=0.085  Sum_probs=41.0

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      .+++++++++++..+ +.+|.+|... +++.  ...  +. .. .        .....+.++  +++|+++. ..+.|.+
T Consensus       123 ~~~~~~g~~l~sg~~-dg~i~vwd~~-~~~~--~~~--~~-~h-~--------~~v~~~~~~--~~~l~s~~-~dg~i~v  183 (445)
T 2ovr_B          123 TCLQFCGNRIVSGSD-DNTLKVWSAV-TGKC--LRT--LV-GH-T--------GGVWSSQMR--DNIIISGS-TDRTLKV  183 (445)
T ss_dssp             EEEEEETTEEEEEET-TSCEEEEETT-TCCE--EEE--CC-CC-S--------SCEEEEEEE--TTEEEEEE-TTSCEEE
T ss_pred             EEEEEcCCEEEEEEC-CCcEEEEECC-CCcE--EEE--Ec-CC-C--------CCEEEEEec--CCEEEEEe-CCCeEEE
Confidence            456777888887776 7888888764 3332  222  11 11 1        334666666  56666555 5789999


Q ss_pred             EEecC
Q 027522           85 YNIED   89 (222)
Q Consensus        85 f~i~d   89 (222)
                      |++..
T Consensus       184 wd~~~  188 (445)
T 2ovr_B          184 WNAET  188 (445)
T ss_dssp             EETTT
T ss_pred             EECCc
Confidence            99843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.51
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.48
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.26
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.19
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.17
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.05
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.04
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.02
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.97
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.97
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.96
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.9
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.72
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.7
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.65
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.64
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.55
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.4
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.28
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.21
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.18
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.15
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.14
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.13
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.12
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.05
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.01
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.96
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.95
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.92
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.87
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.85
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.83
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.79
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.76
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.74
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.73
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.68
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.65
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.6
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.59
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.5
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.38
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.34
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.21
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.13
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.1
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.02
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.99
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	96.73
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.6
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	96.57
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.51
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.43
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.25
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.23
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.17
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.86
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.73
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	95.63
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.42
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.31
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	95.14
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	94.06
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	93.46
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	91.26
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	89.95
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.23
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	87.88
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.06
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	83.99
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	81.02

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.83  E-value=9e-20  Score=160.21  Aligned_cols=138  Identities=7%  Similarity=0.060  Sum_probs=93.7

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCC--CeeEEEEEEecCccccccc--CCCCCCceeEEEEcCCCCEEEEEeCCC
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDG--SWNHEVAISVKSLKVQNWI--LPEMPGLITDFLISLDDRFLYFSNWLH   79 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g--~~~~~q~is~~p~~~~g~~--~~~~~~~~adI~iSpDgrfLYvSnRgh   79 (222)
                      .++|||+++++||++|++++|.+|.++...  .+...+.+++.+.......  ...-...+++|++||||||||++||++
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            478999999999999999999999996432  2333344444432221110  001124578999999999999999998


Q ss_pred             Cc-----EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECC-CCCEEEEEe
Q 027522           80 GD-----IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSL-DGKRLYVTN  153 (222)
Q Consensus        80 ~s-----I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lsp-dGk~LyvaN  153 (222)
                      ++     |+.|+++..  +.+...... ..                     ....|++    ||.|+++| ||+||||||
T Consensus       277 ~~~~~~~i~~~~~~~~--g~~~~~~~~-~~---------------------~~~~G~~----p~~i~~~p~~G~~l~va~  328 (365)
T d1jofa_         277 KFELQGYIAGFKLRDC--GSIEKQLFL-SP---------------------TPTSGGH----SNAVSPCPWSDEWMAITD  328 (365)
T ss_dssp             STTSCCEEEEEEECTT--SCEEEEEEE-EE---------------------CSSCCTT----CCCEEECTTCTTEEEEEC
T ss_pred             CCccceEEEEEEecCC--CceeeEeEe-eE---------------------EEcCCCC----ccEEEecCCCCCEEEEEe
Confidence            87     999999543  333222221 11                     0124777    99999998 899999999


Q ss_pred             CCCCccccccccccccCCcEEEEEEeeCCCC
Q 027522          154 SLFSAWDCQFYPELKEKGSHMLQIDVNSEKG  184 (222)
Q Consensus       154 sl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G  184 (222)
                              |.     ++.+.++++  |.+++
T Consensus       329 --------~~-----s~~v~v~~~--~~~~l  344 (365)
T d1jofa_         329 --------DQ-----EGWLEIYRW--KDEFL  344 (365)
T ss_dssp             --------SS-----SCEEEEEEE--ETTEE
T ss_pred             --------CC-----CCeEEEEEE--eCCcC
Confidence                    76     556666655  54543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1e-16  Score=130.17  Aligned_cols=138  Identities=16%  Similarity=0.234  Sum_probs=106.0

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeC-CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d-~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      -++|++++++.|+.++..++..++.+. ....+...+.+...+....+.      ..++++++|+|++++|++++..+.+
T Consensus       181 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~d~~~~~~~~~~~~~~  254 (333)
T d1ri6a_         181 HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT------RWAADIHITPDGRHLYACDRTASLI  254 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC------CCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcc------ccceeEEEecccCceeeecccCCeE
Confidence            378999999999999999998888875 345666677776666655544      5578999999999999999999999


Q ss_pred             EEEEecCCCCC-eEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522           83 RQYNIEDPKNP-VLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC  161 (222)
Q Consensus        83 ~vf~i~d~~~~-~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~  161 (222)
                      ++|.++..... ++.+.+..                            |..    ||.|++|||||+|||+|        
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~----------------------------~~~----p~~~a~spDGk~l~va~--------  294 (333)
T d1ri6a_         255 TVFSVSEDGSVLSKEGFQPT----------------------------ETQ----PRGFNVDHSGKYLIAAG--------  294 (333)
T ss_dssp             EEEEECTTSCCEEEEEEEEC----------------------------SSS----CCCEEECTTSSEEEEEC--------
T ss_pred             EEEEEcCCCCEEEEEEEeCC----------------------------CCC----eeEEEEeCCCCEEEEEE--------
Confidence            99999543322 22222222                            334    99999999999999999        


Q ss_pred             ccccccccCCcEEEEEEeeCCCCCeeeccceeE
Q 027522          162 QFYPELKEKGSHMLQIDVNSEKGGMAINPNFFV  194 (222)
Q Consensus       162 Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~v  194 (222)
                      |       ++.+|..+++|.+||.|+....+.+
T Consensus       295 ~-------~~~~v~v~~id~~tG~l~~~~~~~~  320 (333)
T d1ri6a_         295 Q-------KSHHISVYEIVGEQGLLHEKGRYAV  320 (333)
T ss_dssp             T-------TTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred             C-------CCCeEEEEEEECCCCcEEEEEeccC
Confidence            5       4556666677889999987776654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=4e-13  Score=108.62  Aligned_cols=97  Identities=14%  Similarity=0.271  Sum_probs=78.0

Q ss_pred             CCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 027522           11 KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP   90 (222)
Q Consensus        11 g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~   90 (222)
                      .+.+||.+.=+.+|.+|..+.+|.++..+++..+             ..+..|.+|||||+|||+++..+.|.+|+|+. 
T Consensus         3 ~~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~-------------~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~-   68 (333)
T d1ri6a_           3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVP-------------GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP-   68 (333)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS-------------SCCCCEEECTTSSEEEEEETTTTEEEEEEECT-
T ss_pred             ceEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCC-------------CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC-
Confidence            3568999999999999998777888888877654             23478999999999999999999999999954 


Q ss_pred             CCC--eEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           91 KNP--VLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        91 ~~~--~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ...  +++.+...                            +..    |..+++||||++|||+|
T Consensus        69 ~~~~~~~~~~~~~----------------------------~~~----p~~l~~spDg~~l~v~~  101 (333)
T d1ri6a_          69 DDGALTFAAESAL----------------------------PGS----LTHISTDHQGQFVFVGS  101 (333)
T ss_dssp             TTCCEEEEEEEEC----------------------------SSC----CSEEEECTTSSEEEEEE
T ss_pred             CCCcEEEeeeccc----------------------------CCC----ceEEEEcCCCCEEeecc
Confidence            333  33333332                            333    99999999999999998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.48  E-value=3e-12  Score=111.68  Aligned_cols=124  Identities=12%  Similarity=0.074  Sum_probs=86.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      .+|+|+|+++||.+.-..+|++|..+.+|.+.....+..++..          ..+..|.+||||+++||+|...+.|.+
T Consensus       150 v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g----------~gPr~i~f~pdg~~~yv~~e~~~~V~v  219 (365)
T d1jofa_         150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG----------DHPRWVAMHPTGNYLYALMEAGNRICE  219 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT----------CCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCC----------CceEEEEECCCCceEEEeccCCCEEEE
Confidence            6899999999999987889999988777877766665554321          456999999999999999999999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |+++. .+...+..+...-.++.         ......+ .....+..    |..+++||||++|||+|
T Consensus       220 ~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~----~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         220 YVIDP-ATHMPVYTHHSFPLIPP---------GIPDRDP-ETGKGLYR----ADVCALTFSGKYMFASS  273 (365)
T ss_dssp             EEECT-TTCCEEEEEEEEESSCT---------TCCCBCT-TTSSBSEE----EEEEEECTTSSEEEEEE
T ss_pred             EEecC-CCceEEEEeeeeccccc---------ccccccc-ccccccCC----ccceEECCCCCEEEEEc
Confidence            99954 44444333222100000         0000000 01111223    78899999999999999

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.26  E-value=3.5e-11  Score=96.59  Aligned_cols=106  Identities=15%  Similarity=0.056  Sum_probs=79.9

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+++++++++.++ +++|.+|..+ ++  +..+++.++..           ..+..|.+|||||+|||++..++.|.+
T Consensus         2 ~a~~~~~~~l~~~~~-~~~v~v~D~~-t~--~~~~t~~~~~~-----------~~p~~l~~spDG~~l~v~~~~~~~v~~   66 (346)
T d1jmxb_           2 PALKAGHEYMIVTNY-PNNLHVVDVA-SD--TVYKSCVMPDK-----------FGPGTAMMAPDNRTAYVLNNHYGDIYG   66 (346)
T ss_dssp             CCCCTTCEEEEEEET-TTEEEEEETT-TT--EEEEEEECSSC-----------CSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccCCCCCcEEEEEcC-CCEEEEEECC-CC--CEEEEEEcCCC-----------CCcceEEECCCCCEEEEEECCCCcEEE
Confidence            579999999999888 6889999764 33  44566655421           234799999999999999999999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++.   +++++.++..+...                     ......    |..+++||||++|||++
T Consensus        67 ~d~~---t~~~~~~~~~~~~~---------------------~~~~~~----~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          67 IDLD---TCKNTFHANLSSVP---------------------GEVGRS----MYSFAISPDGKEVYATV  107 (346)
T ss_dssp             EETT---TTEEEEEEESCCST---------------------TEEEEC----SSCEEECTTSSEEEEEE
T ss_pred             EeCc---cCeeeeeecccccc---------------------cccCCc----eEEEEEecCCCEEEEEe
Confidence            9874   47777666653210                     001223    89999999999999997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.19  E-value=6.7e-10  Score=87.77  Aligned_cols=115  Identities=15%  Similarity=0.185  Sum_probs=83.7

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC--Cc
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH--GD   81 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh--~s   81 (222)
                      .++++|+++++|+.+.-...+.++... ..  ...+.+...             ..+..+.+++||+++|+++...  +.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~-------------~~~~~~~~~~~g~~~~v~~~~~~~~~  225 (301)
T d1l0qa2         162 GIAVTPDGTKVYVANFDSMSISVIDTV-TN--SVIDTVKVE-------------AAPSGIAVNPEGTKAYVTNVDKYFNT  225 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETT-TT--EEEEEEECS-------------SEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred             EEEeeccccceeeeccccccccccccc-ce--eeeeccccc-------------CCcceeeccccccccccccccceeee
Confidence            467999999999999877777666543 22  223333221             3457899999999999987654  67


Q ss_pred             EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522           82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC  161 (222)
Q Consensus        82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~  161 (222)
                      |.+|++   .+++++.++..                            |..    |+.+++||||++||||+        
T Consensus       226 v~v~D~---~t~~~~~~~~~----------------------------~~~----~~~va~spdg~~l~va~--------  262 (301)
T d1l0qa2         226 VSMIDT---GTNKITARIPV----------------------------GPD----PAGIAVTPDGKKVYVAL--------  262 (301)
T ss_dssp             EEEEET---TTTEEEEEEEC----------------------------CSS----EEEEEECTTSSEEEEEE--------
T ss_pred             eeeeec---CCCeEEEEEcC----------------------------CCC----EEEEEEeCCCCEEEEEE--------
Confidence            888866   34777777665                            333    99999999999999999        


Q ss_pred             ccccccccCCcEEEEEEeeCCCCCe
Q 027522          162 QFYPELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       162 Q~yp~~~s~~~~i~~~dvd~~~G~l  186 (222)
                             +.+.+|..+  |.+||++
T Consensus       263 -------~~~~~i~v~--D~~t~~~  278 (301)
T d1l0qa2         263 -------SFCNTVSVI--DTATNTI  278 (301)
T ss_dssp             -------TTTTEEEEE--ETTTTEE
T ss_pred             -------CCCCeEEEE--ECCCCeE
Confidence                   345677777  5588865

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.17  E-value=5.3e-10  Score=88.33  Aligned_cols=91  Identities=22%  Similarity=0.304  Sum_probs=72.4

Q ss_pred             CeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCC
Q 027522           12 DIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK   91 (222)
Q Consensus        12 ~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~   91 (222)
                      .|+||.+.-+++|.++..+ ++  +.++++.+.             ..+..|.+|||||+|||++...+.|.+|++.   
T Consensus         2 ~~~yV~~~~~~~v~v~D~~-t~--~~~~~i~~g-------------~~p~~va~spdG~~l~v~~~~~~~i~v~d~~---   62 (301)
T d1l0qa2           2 TFAYIANSESDNISVIDVT-SN--KVTATIPVG-------------SNPMGAVISPDGTKVYVANAHSNDVSIIDTA---   62 (301)
T ss_dssp             EEEEEEETTTTEEEEEETT-TT--EEEEEEECS-------------SSEEEEEECTTSSEEEEEEGGGTEEEEEETT---
T ss_pred             eEEEEEECCCCEEEEEECC-CC--eEEEEEECC-------------CCceEEEEeCCCCEEEEEECCCCEEEEEECC---
Confidence            5899999999999999753 44  445555542             2357899999999999999999999999874   


Q ss_pred             CCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           92 NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        92 ~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +++.+.++..                            +..    |+.+++++||+++++++
T Consensus        63 t~~~~~~~~~----------------------------~~~----~~~~~~~~~~~~~~~~~   92 (301)
T d1l0qa2          63 TNNVIATVPA----------------------------GSS----PQGVAVSPDGKQVYVTN   92 (301)
T ss_dssp             TTEEEEEEEC----------------------------SSS----EEEEEECTTSSEEEEEE
T ss_pred             CCceeeeeec----------------------------ccc----ccccccccccccccccc
Confidence            3666666554                            233    89999999999999998

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.05  E-value=2.2e-09  Score=91.78  Aligned_cols=122  Identities=12%  Similarity=0.167  Sum_probs=90.5

Q ss_pred             EEEcCCCC----eEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            5 FLHDPSKD----IGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         5 ~afhP~g~----~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      ++|+|+++    ++||..-.+..|++|..+.+|.....++....+....        ..+-.|.+..||+ |||++++.+
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~--------~~pdGiavD~~Gn-lyVa~~~~g  247 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--------GGADGMDFDEDNN-LLVANWGSS  247 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--------CEEEEEEEBTTCC-EEEEEETTT
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc--------ccceeeEEecCCc-EEEEEcCCC
Confidence            46777665    7899988889999998776777776666543332111        3457899999998 899999999


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccc
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWD  160 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd  160 (222)
                      .|.+|   +|..+++...+.+.                           +.+    |.++++.|||+.|||++       
T Consensus       248 ~I~~~---dp~~g~~~~~i~~p---------------------------~~~----~t~~afg~d~~~lyVt~-------  286 (314)
T d1pjxa_         248 HIEVF---GPDGGQPKMRIRCP---------------------------FEK----PSNLHFKPQTKTIFVTE-------  286 (314)
T ss_dssp             EEEEE---CTTCBSCSEEEECS---------------------------SSC----EEEEEECTTSSEEEEEE-------
T ss_pred             EEEEE---eCCCCEEEEEEECC---------------------------CCC----EEEEEEeCCCCEEEEEE-------
Confidence            99999   44445554455541                           344    88999999999999999       


Q ss_pred             cccccccccCCcEEEEEEeeCCCCC
Q 027522          161 CQFYPELKEKGSHMLQIDVNSEKGG  185 (222)
Q Consensus       161 ~Q~yp~~~s~~~~i~~~dvd~~~G~  185 (222)
                              +.+..|++++.+ ..|.
T Consensus       287 --------~~~g~i~~~~~~-~~G~  302 (314)
T d1pjxa_         287 --------HENNAVWKFEWQ-RNGK  302 (314)
T ss_dssp             --------TTTTEEEEEECS-SCBC
T ss_pred             --------CCCCcEEEEECC-CCCh
Confidence                    468899999874 5553

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.04  E-value=1.2e-09  Score=96.55  Aligned_cols=111  Identities=11%  Similarity=-0.042  Sum_probs=76.5

Q ss_pred             EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522            6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY   85 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf   85 (222)
                      +|+|||+++||.++.+.+|.++..+ .++.  .+++........... .........|..||||+.+|++....+.|.++
T Consensus       115 ~~SpDG~~l~vs~~~~~~v~i~d~~-t~~~--~~~~~~~~~~~~~~~-~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~  190 (432)
T d1qksa2         115 MEGWEDKYAIAGAYWPPQYVIMDGE-TLEP--KKIQSTRGMTYDEQE-YHPEPRVAAILASHYRPEFIVNVKETGKILLV  190 (432)
T ss_dssp             STTCTTTEEEEEEEETTEEEEEETT-TCCE--EEEEECCEECTTTCC-EESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             ccCCCCCEEEEEcCCCCeEEEEeCc-cccc--eeeeccCCcccccee-ccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence            5678999999999999999999763 3433  333322111110000 00113457899999999999999999999999


Q ss_pred             EecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           86 NIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        86 ~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +..+...+ -+.++.+                            |+.    |+.+++||||++||++|
T Consensus       191 d~~~~~~~-~~~~i~~----------------------------g~~----~~~~~~spdg~~~~va~  225 (432)
T d1qksa2         191 DYTDLNNL-KTTEISA----------------------------ERF----LHDGGLDGSHRYFITAA  225 (432)
T ss_dssp             ETTCSSEE-EEEEEEC----------------------------CSS----EEEEEECTTSCEEEEEE
T ss_pred             EccCCCcc-eEEEEcc----------------------------cCc----cccceECCCCCEEEEec
Confidence            88653222 2233333                            444    99999999999999999

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.02  E-value=3.6e-09  Score=86.22  Aligned_cols=104  Identities=15%  Similarity=0.149  Sum_probs=71.3

Q ss_pred             EEcCCCCeEEEEec----cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC---
Q 027522            6 LHDPSKDIGFVGCA----LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL---   78 (222)
Q Consensus         6 afhP~g~~aYvv~E----LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg---   78 (222)
                      +-+|+|+.+||.++    ..++|+++.-+ .|+  ....+..      |.        ...+.+|||||+|||+|..   
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~-tg~--~~~~~~~------g~--------~~~~a~SpDg~~l~v~~~~~~~   70 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGE-AGR--VIGMIDG------GF--------LPNPVVADDGSFIAHASTVFSR   70 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETT-TTE--EEEEEEE------CS--------SCEEEECTTSSCEEEEEEEEEE
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECC-CCc--EEEEEEC------CC--------CCceEEcCCCCEEEEEeCCCcc
Confidence            45899999999875    45678888643 443  3333332      11        1358999999999998852   


Q ss_pred             ------CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE
Q 027522           79 ------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT  152 (222)
Q Consensus        79 ------h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva  152 (222)
                            .+.|.+||.   .+++++.++......                   .. .-|.    .|+.+++||||++|+++
T Consensus        71 ~~~g~~d~~v~v~D~---~t~~~~~~~~~~~~~-------------------~~-~~~~----~~~~~~~s~dg~~~~v~  123 (355)
T d2bbkh_          71 IARGERTDYVEVFDP---VTLLPTADIELPDAP-------------------RF-LVGT----YPWMTSLTPDGKTLLFY  123 (355)
T ss_dssp             TTEEEEEEEEEEECT---TTCCEEEEEEETTCC-------------------CC-CBSC----CGGGEEECTTSSEEEEE
T ss_pred             ccccCCCCEEEEEEC---CCCCEEEEEecCCcc-------------------ee-ecCC----CCceEEEecCCCeeEEe
Confidence                  467888865   457777777653210                   00 0133    39999999999999999


Q ss_pred             e
Q 027522          153 N  153 (222)
Q Consensus       153 N  153 (222)
                      |
T Consensus       124 ~  124 (355)
T d2bbkh_         124 Q  124 (355)
T ss_dssp             E
T ss_pred             c
Confidence            8

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.97  E-value=4.6e-09  Score=92.69  Aligned_cols=97  Identities=13%  Similarity=0.141  Sum_probs=67.7

Q ss_pred             EcCCCCeEEEEec-cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522            7 HDPSKDIGFVGCA-LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY   85 (222)
Q Consensus         7 fhP~g~~aYvv~E-LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf   85 (222)
                      +..+....++++| =+++|.++..+ .+  +.+..+...             ..+..|.+|||||+||+++| .+.|.+|
T Consensus        26 ~~~~~~~~~~v~~~d~g~v~v~D~~-t~--~v~~~~~~g-------------~~~~~v~fSpDG~~l~~~s~-dg~v~~~   88 (432)
T d1qksa2          26 NDWDLENLFSVTLRDAGQIALIDGS-TY--EIKTVLDTG-------------YAVHISRLSASGRYLFVIGR-DGKVNMI   88 (432)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETT-TC--CEEEEEECS-------------SCEEEEEECTTSCEEEEEET-TSEEEEE
T ss_pred             ecCCCCcEEEEEEcCCCEEEEEECC-CC--cEEEEEeCC-------------CCeeEEEECCCCCEEEEEcC-CCCEEEE
Confidence            4455455555555 45678888753 23  444444432             23589999999999999998 5789999


Q ss_pred             EecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEE----CCCCCEEEEEe
Q 027522           86 NIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL----SLDGKRLYVTN  153 (222)
Q Consensus        86 ~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~l----spdGk~LyvaN  153 (222)
                      ++. ..+++.+.+|.++                            ..    |+.+.+    ||||++|||+|
T Consensus        89 d~~-t~~~~~~~~i~~~----------------------------~~----~~~~~~s~~~SpDG~~l~vs~  127 (432)
T d1qksa2          89 DLW-MKEPTTVAEIKIG----------------------------SE----ARSIETSKMEGWEDKYAIAGA  127 (432)
T ss_dssp             ETT-SSSCCEEEEEECC----------------------------SE----EEEEEECCSTTCTTTEEEEEE
T ss_pred             Eee-CCCceEEEEEecC----------------------------CC----CCCeEEecccCCCCCEEEEEc
Confidence            994 4667777777763                            33    666665    66999999999

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.97  E-value=6.9e-09  Score=82.59  Aligned_cols=105  Identities=14%  Similarity=0.139  Sum_probs=72.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC------
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL------   78 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg------   78 (222)
                      ++|+|||+++||.+--+++|.+|... +|+.  +..+........+       ..+..+.+||||++||++++.      
T Consensus        39 i~~spDg~~l~v~~~~~~~v~v~D~~-t~~~--~~~~~~~~~~~~~-------~~~~~v~~s~dg~~l~~~~~~~~~~~~  108 (337)
T d1pbyb_          39 PMVAPGGRIAYATVNKSESLVKIDLV-TGET--LGRIDLSTPEERV-------KSLFGAALSPDGKTLAIYESPVRLELT  108 (337)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETT-TCCE--EEEEECCBTTEEE-------ECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred             EEECCCCCEEEEEECCCCeEEEEECC-CCcE--EEEEecCCCcccc-------cceeeEEEcCCCcEEEEeecCCcceee
Confidence            68999999999998888999999764 4443  3444443221111       234689999999999999873      


Q ss_pred             -----CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           79 -----HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        79 -----h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                           ...+.+|+..   .++....+..                            +.    .|+.+++||||++||+++
T Consensus       109 ~~~~~~~~~~~~d~~---~~~~~~~~~~----------------------------~~----~~~~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_         109 HFEVQPTRVALYDAE---TLSRRKAFEA----------------------------PR----QITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             CEEECCCEEEEEETT---TTEEEEEEEC----------------------------CS----SCCCEEECTTSSCEEEES
T ss_pred             eccccccceeecccc---CCeEEEeccc----------------------------cC----CceEEEEcCCCCEEEEEc
Confidence                 3455556542   2444333332                            12    288999999999999998


Q ss_pred             C
Q 027522          154 S  154 (222)
Q Consensus       154 s  154 (222)
                      .
T Consensus       154 ~  154 (337)
T d1pbyb_         154 R  154 (337)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.96  E-value=1.2e-09  Score=100.37  Aligned_cols=101  Identities=12%  Similarity=0.036  Sum_probs=78.9

Q ss_pred             EcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE---
Q 027522            7 HDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR---   83 (222)
Q Consensus         7 fhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~---   83 (222)
                      +.|||+++||.++.+++|.++..+   +++..+++.+|..           ..+..+.+|||||++||.|.+.+.+.   
T Consensus        79 gtpDGr~lfV~d~~~~rVavIDl~---t~k~~~ii~iP~g-----------~gphgi~~spdg~t~YV~~~~~~~v~~~~  144 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVARIRLD---IMKTDKITHIPNV-----------QAIHGLRLQKVPKTNYVFCNAEFVIPQPN  144 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETT---TTEEEEEEECTTC-----------CCEEEEEECCSSBCCEEEEEECSCEESSC
T ss_pred             ccCCCCEEEEEcCCCCEEEEEECC---CCcEeeEEecCCC-----------CCccceEEeccCCEEEEEeccCCcccccC
Confidence            469999999999999999999763   4566777777631           34588999999999999998877763   


Q ss_pred             ------------EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEE
Q 027522           84 ------------QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYV  151 (222)
Q Consensus        84 ------------vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyv  151 (222)
                                  .|.+-|+.+.+...+|.++|                            .    |+.+.++|||||+|+
T Consensus       145 dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~----------------------------~----p~~v~~spdGk~a~v  192 (441)
T d1qnia2         145 DGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG----------------------------N----LDNTDADYTGKYATS  192 (441)
T ss_dssp             SSSCCCGGGEEEEEEEEETTTCSEEEEEEESS----------------------------C----CCCEEECSSSSEEEE
T ss_pred             cccccccccccceEEeecCccceeeEEEecCC----------------------------C----ccceEECCCCCEEEE
Confidence                        33333555566666666632                            2    999999999999999


Q ss_pred             Ee
Q 027522          152 TN  153 (222)
Q Consensus       152 aN  153 (222)
                      +|
T Consensus       193 t~  194 (441)
T d1qnia2         193 TC  194 (441)
T ss_dssp             EE
T ss_pred             Ee
Confidence            97

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.95  E-value=4.3e-09  Score=83.79  Aligned_cols=98  Identities=15%  Similarity=0.090  Sum_probs=69.2

Q ss_pred             EEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCe
Q 027522           15 FVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPV   94 (222)
Q Consensus        15 Yvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~   94 (222)
                      +|.+..+++|.+|... ++  +..+.+.++..   +       ..+..|.+|||||+|||++-..+.|.+|++.   +++
T Consensus         4 ~vt~~~d~~v~v~D~~-s~--~~~~~i~~~~~---~-------~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~---t~~   67 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTE-KM--AVDKVITIADA---G-------PTPMVPMVAPGGRIAYATVNKSESLVKIDLV---TGE   67 (337)
T ss_dssp             EEEEETTTEEEEEETT-TT--EEEEEEECTTC---T-------TCCCCEEECTTSSEEEEEETTTTEEEEEETT---TCC
T ss_pred             EEEEcCCCEEEEEECC-CC--eEEEEEECCCC---C-------CCccEEEECCCCCEEEEEECCCCeEEEEECC---CCc
Confidence            3444458999999763 33  44555544321   1       3357899999999999999888999999884   366


Q ss_pred             EEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522           95 LTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS  154 (222)
Q Consensus        95 L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs  154 (222)
                      ++.++.....                      ...+..    |..+++||||++||+++.
T Consensus        68 ~~~~~~~~~~----------------------~~~~~~----~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          68 TLGRIDLSTP----------------------EERVKS----LFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             EEEEEECCBT----------------------TEEEEC----TTCEEECTTSSEEEEEEE
T ss_pred             EEEEEecCCC----------------------cccccc----eeeEEEcCCCcEEEEeec
Confidence            7666665211                      112344    888999999999999973

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.95  E-value=8.5e-09  Score=89.04  Aligned_cols=73  Identities=8%  Similarity=-0.037  Sum_probs=52.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|||+++|+.++ +++|.++..+ +++......+...... .        +.+..+..||||++||+++...+.|++
T Consensus        67 vafSPDGk~l~~~~~-d~~v~vwd~~-t~~~~~~~~i~~~~~~-~--------~~~~s~~~spDG~~l~v~~~~~~~v~i  135 (426)
T d1hzua2          67 SRMSASGRYLLVIGR-DARIDMIDLW-AKEPTKVAEIKIGIEA-R--------SVESSKFKGYEDRYTIAGAYWPPQFAI  135 (426)
T ss_dssp             EEECTTSCEEEEEET-TSEEEEEETT-SSSCEEEEEEECCSEE-E--------EEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred             EEECCCCCEEEEEeC-CCCEEEEEcc-CCceeEEEEEeCCCCC-c--------ceEEeeeecCCCCEEEEeecCCCeEEE
Confidence            689999999999997 7899988764 3444433334332211 1        223455567899999999999999999


Q ss_pred             EEec
Q 027522           85 YNIE   88 (222)
Q Consensus        85 f~i~   88 (222)
                      |+..
T Consensus       136 ~d~~  139 (426)
T d1hzua2         136 MDGE  139 (426)
T ss_dssp             EETT
T ss_pred             EcCC
Confidence            9874

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.90  E-value=1.7e-08  Score=87.06  Aligned_cols=100  Identities=14%  Similarity=0.099  Sum_probs=69.2

Q ss_pred             eEEEcCCCCeEE-EEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGF-VGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aY-vv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      |.++.++.+..+ |.+--+++|.++.-. ++  +.+.++...             ..+..|.+|||||+||++++. +.|
T Consensus        23 ~~~~~~d~~~~~~V~~~~dg~v~vwD~~-t~--~~~~~l~~g-------------~~~~~vafSPDGk~l~~~~~d-~~v   85 (426)
T d1hzua2          23 KQLNDLDLPNLFSVTLRDAGQIALVDGD-SK--KIVKVIDTG-------------YAVHISRMSASGRYLLVIGRD-ARI   85 (426)
T ss_dssp             SCCSCCCGGGEEEEEETTTTEEEEEETT-TC--SEEEEEECC-------------SSEEEEEECTTSCEEEEEETT-SEE
T ss_pred             cccccCCCCeEEEEEEcCCCEEEEEECC-CC--cEEEEEeCC-------------CCeeEEEECCCCCEEEEEeCC-CCE
Confidence            456777755555 545457899999653 33  444444432             235789999999999999984 689


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEE----CCCCCEEEEEe
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL----SLDGKRLYVTN  153 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~l----spdGk~LyvaN  153 (222)
                      .+|++. ..++..+.++..+                            ..    |+.+.+    ||||++|||+|
T Consensus        86 ~vwd~~-t~~~~~~~~i~~~----------------------------~~----~~~~~~s~~~spDG~~l~v~~  127 (426)
T d1hzua2          86 DMIDLW-AKEPTKVAEIKIG----------------------------IE----ARSVESSKFKGYEDRYTIAGA  127 (426)
T ss_dssp             EEEETT-SSSCEEEEEEECC----------------------------SE----EEEEEECCSTTCTTTEEEEEE
T ss_pred             EEEEcc-CCceeEEEEEeCC----------------------------CC----CcceEEeeeecCCCCEEEEee
Confidence            999994 4556565666652                            22    556655    57999999998

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.80  E-value=4.4e-08  Score=82.22  Aligned_cols=104  Identities=9%  Similarity=-0.112  Sum_probs=68.0

Q ss_pred             EEcCCCCeEEEEec--cCce--EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC---
Q 027522            6 LHDPSKDIGFVGCA--LAST--MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL---   78 (222)
Q Consensus         6 afhP~g~~aYvv~E--Lsst--V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg---   78 (222)
                      +..|+++..|+.-.  -+.+  |+++.-+ .+  +..+++...   +          . ..+.+|||||+||++|..   
T Consensus        26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~-~~--~~~~~~~~~---~----------~-~~~a~spDg~~i~~~~~~~~~   88 (368)
T d1mdah_          26 GPGAISRRSHITLPAYFAGTTENWVSCAG-CG--VTLGHSLGA---F----------L-SLAVAGHSGSDFALASTSFAR   88 (368)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETT-TT--EEEEEEEEC---T----------T-CEEEECTTSSCEEEEEEEETT
T ss_pred             ccCCCCcceeEEeeccCCCcceEEEEeCC-CC--cEEEEEeCC---C----------C-CcceECCCCCEEEEEcccCcc
Confidence            45788999887743  3333  6666432 33  344444321   1          1 358899999999999853   


Q ss_pred             ------CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE
Q 027522           79 ------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT  152 (222)
Q Consensus        79 ------h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva  152 (222)
                            .+.|++||.   .+++.+..+.....                    .....|..    |..+++|||||+|||+
T Consensus        89 ~~~g~~d~~v~v~D~---~t~~~~~~i~~p~~--------------------~~~~~g~~----p~~~a~SpDGk~l~va  141 (368)
T d1mdah_          89 SAKGKRTDYVEVFDP---VTFLPIADIELPDA--------------------PRFSVGPR----VHIIGNCASSACLLFF  141 (368)
T ss_dssp             TTSSSEEEEEEEECT---TTCCEEEEEEETTS--------------------CSCCBSCC----TTSEEECTTSSCEEEE
T ss_pred             ccccccCCeEEEEEC---CCCcEeeeecCCcc--------------------ceecccCC----ccceEECCCCCEEEEE
Confidence                  356888855   45777777765210                    01112455    8999999999999999


Q ss_pred             e
Q 027522          153 N  153 (222)
Q Consensus       153 N  153 (222)
                      |
T Consensus       142 ~  142 (368)
T d1mdah_         142 L  142 (368)
T ss_dssp             E
T ss_pred             e
Confidence            9

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.72  E-value=6.3e-08  Score=79.61  Aligned_cols=77  Identities=3%  Similarity=-0.045  Sum_probs=51.9

Q ss_pred             EEEcCCCCeEEEEeccC----ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC--
Q 027522            5 FLHDPSKDIGFVGCALA----STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL--   78 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELs----stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg--   78 (222)
                      .+++|+|+.+|+.+.-.    ++|+++.- ++|  +..+++...      .        ...+.+|||||+||+++..  
T Consensus        26 ~a~spdg~~~~~~~~~~~~~~~~v~v~D~-~tg--~~~~~~~~~------~--------~~~~a~SpDG~~l~va~~~~~   88 (373)
T d2madh_          26 EAPGADGRRSYINLPAHHSAIIQQWVLDA-GSG--SILGHVNGG------F--------LPNPVAAHSGSEFALASTSFS   88 (373)
T ss_pred             cccCCCCCEEEEEcccccCCCceEEEEEC-CCC--CEEEEEeCC------C--------CccEEEcCCCCEEEEEeecCC
Confidence            57999999999987633    45777753 334  334444321      1        1368999999999999864  


Q ss_pred             -------CCcEEEEEecCCCCCeEEEEEEe
Q 027522           79 -------HGDIRQYNIEDPKNPVLTGQIWV  101 (222)
Q Consensus        79 -------h~sI~vf~i~d~~~~~L~~~v~~  101 (222)
                             .+.|.+|+..   +++++..+..
T Consensus        89 ~~~~~~~~~~v~v~D~~---t~~~~~~~~~  115 (373)
T d2madh_          89 RIAKGKRTDYVEVFDPV---TFLPIADIEL  115 (373)
T ss_pred             cccccccceEEEEEECC---CCcEEEEEec
Confidence                   3678999774   3566555544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.70  E-value=6.3e-07  Score=75.87  Aligned_cols=129  Identities=17%  Similarity=0.155  Sum_probs=89.7

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+++.+|+..-.+..|++|..+.+|..........+ ....+.      ..+-.|.+..||+ |||++++.+.|.+
T Consensus       182 ia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~-~~~~~~------~~PdGl~vD~~G~-l~Va~~~~g~V~~  253 (319)
T d2dg1a1         182 IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP-YYFTGH------EGPDSCCIDSDDN-LYVAMYGQGRVLV  253 (319)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE-EECCSS------SEEEEEEEBTTCC-EEEEEETTTEEEE
T ss_pred             eeeccccceEEEecccCCceEEEEEcCCCceeccccceee-eccCCc------cceeeeeEcCCCC-EEEEEcCCCEEEE
Confidence            6899999999999999999999998766654332222211 111111      3457899999998 9999999999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY  164 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y  164 (222)
                      |+   + .++++.+|.+-+.                     ..-....    +-++++.+++.+||++.+    ....  
T Consensus       254 ~~---p-~G~~l~~i~~P~~---------------------~~~~~~~----~~~~~~~~~~~~~~~t~~----~~~~--  298 (319)
T d2dg1a1         254 FN---K-RGYPIGQILIPGR---------------------DEGHMLR----STHPQFIPGTNQLIICSN----DIEM--  298 (319)
T ss_dssp             EC---T-TSCEEEEEECTTG---------------------GGTCSCB----CCEEEECTTSCEEEEEEE----CGGG--
T ss_pred             EC---C-CCcEEEEEeCCCc---------------------CCCcCce----eeeEEEeCCCCEEEEEcC----CCCc--
Confidence            84   4 3788888876221                     0001112    568899999999998862    1222  


Q ss_pred             cccccCCcEEEEEEee
Q 027522          165 PELKEKGSHMLQIDVN  180 (222)
Q Consensus       165 p~~~s~~~~i~~~dvd  180 (222)
                          ..+..+++++.+
T Consensus       299 ----~~~g~l~~~~~~  310 (319)
T d2dg1a1         299 ----GGGSMLYTVNGF  310 (319)
T ss_dssp             ----TCCEEEEEEECS
T ss_pred             ----CCceeEEEEeCC
Confidence                467889999774

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.68  E-value=4.1e-08  Score=90.02  Aligned_cols=78  Identities=12%  Similarity=0.175  Sum_probs=42.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEe----CCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSK----TQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~----d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      ++|+|+|+++||.|+-...+..-..    +.+.+......+........ ++ ..++..+..+.+|||||++|++|...+
T Consensus       121 i~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~-~q-I~v~~~p~~v~~spdGk~a~vt~~nse  198 (441)
T d1qnia2         121 LRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA-WQ-VIVDGNLDNTDADYTGKYATSTCYNSE  198 (441)
T ss_dssp             EEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE-EE-EEESSCCCCEEECSSSSEEEEEESCTT
T ss_pred             eEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee-EE-EecCCCccceEECCCCCEEEEEecCCC
Confidence            6899999999999876665533110    00011111111111110000 00 001234578999999999999998766


Q ss_pred             cEEE
Q 027522           81 DIRQ   84 (222)
Q Consensus        81 sI~v   84 (222)
                      .+.+
T Consensus       199 ~~~~  202 (441)
T d1qnia2         199 RAVD  202 (441)
T ss_dssp             CCSS
T ss_pred             ceEE
Confidence            5443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.67  E-value=4.9e-08  Score=81.90  Aligned_cols=115  Identities=6%  Similarity=-0.134  Sum_probs=78.7

Q ss_pred             eEEEcCCCCeEEEEec---------cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEE
Q 027522            4 RFLHDPSKDIGFVGCA---------LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYF   74 (222)
Q Consensus         4 r~afhP~g~~aYvv~E---------LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYv   74 (222)
                      ..+|+|+|+++|+.+.         .+.+|.+|.-   .+.+..+.+.++......     ....+..|.+|||||+||+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~---~t~~~~~~i~~p~~~~~~-----~g~~p~~~a~SpDGk~l~v  140 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP---VTFLPIADIELPDAPRFS-----VGPRVHIIGNCASSACLLF  140 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT---TTCCEEEEEEETTSCSCC-----BSCCTTSEEECTTSSCEEE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEEC---CCCcEeeeecCCccceec-----ccCCccceEECCCCCEEEE
Confidence            3689999999999984         3455777743   234556667665432210     0123457999999999999


Q ss_pred             EeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           75 SNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        75 SnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|+..+.|++|++..   ++++..+.+.+...                        ....+.+..++.++||+.++++.
T Consensus       141 a~~~~~~v~~~d~~~---~~~~~~~~~~~~~~------------------------~~~~~~~~~v~~~~Dg~~~~~~~  192 (368)
T d1mdah_         141 FLFGSSAAAGLSVPG---ASDDQLTKSASCFH------------------------IHPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             EECSSSCEEEEEETT---TEEEEEEECSSCCC------------------------CEEEETTEEECCCCTTSCEEEEC
T ss_pred             EeCCCCeEEEEECCC---CcEeEEeeccCcce------------------------EccCCCceEEEEcCCCCEEEEEe
Confidence            999999999998843   67777766643210                        00111267888999999999886

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.65  E-value=2.1e-07  Score=74.04  Aligned_cols=139  Identities=14%  Similarity=0.177  Sum_probs=83.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeC---CCCC-----eeE---EEEEEecCcccccccCCCCCCceeEEEEcCCCCEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKT---QDGS-----WNH---EVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLY   73 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d---~~g~-----~~~---~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLY   73 (222)
                      .+++|++...|+.++-+.++..+...   ..+.     ...   ..++.+...................+..+++++++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (346)
T d1jmxb_         188 GYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI  267 (346)
T ss_dssp             TBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE
T ss_pred             eEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEE
Confidence            46788999999888888877665431   0000     011   111121111100000000113456788899888875


Q ss_pred             EEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           74 FSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        74 vSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ...  .+.|.+|+..   +++++..+..                            |..    |+.+++||||++||+++
T Consensus       268 ~~~--~~~v~v~d~~---~~~~~~~~~~----------------------------~~~----~~~va~s~DG~~l~v~~  310 (346)
T d1jmxb_         268 YGV--LNRLAKYDLK---QRKLIKAANL----------------------------DHT----YYCVAFDKKGDKLYLGG  310 (346)
T ss_dssp             EEE--ESEEEEEETT---TTEEEEEEEC----------------------------SSC----CCEEEECSSSSCEEEES
T ss_pred             Eec--CCeEEEEECC---CCcEEEEEcC----------------------------CCC----EEEEEEcCCCCEEEEEe
Confidence            443  5689999763   4677666655                            333    89999999999999998


Q ss_pred             CCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCCCcC
Q 027522          154 SLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCT  217 (222)
Q Consensus       154 sl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~gd~~  217 (222)
                              +       + ..|..+  |.+|+++                   .++|+.||||++
T Consensus       311 --------~-------d-~~v~v~--D~~t~~~-------------------i~~i~~p~g~~~  337 (346)
T d1jmxb_         311 --------T-------F-NDLAVF--NPDTLEK-------------------VKNIKLPGGDMS  337 (346)
T ss_dssp             --------B-------S-SEEEEE--ETTTTEE-------------------EEEEECSSSCCB
T ss_pred             --------C-------C-CcEEEE--ECccCCE-------------------EEEEECCCCCcc
Confidence                    3       3 356667  4477753                   457778888765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.64  E-value=2.4e-07  Score=75.04  Aligned_cols=114  Identities=8%  Similarity=-0.040  Sum_probs=75.8

Q ss_pred             EEEcCCCCeEEEEecc---------CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEE
Q 027522            5 FLHDPSKDIGFVGCAL---------ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS   75 (222)
Q Consensus         5 ~afhP~g~~aYvv~EL---------sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvS   75 (222)
                      ++|+|||+++||.++.         +.+|.+|.. +++  +..+.+.++......     ....+..+.+||||++||+.
T Consensus        52 ~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~-~t~--~~~~~~~~~~~~~~~-----~~~~~~~~~~s~dg~~~~v~  123 (355)
T d2bbkh_          52 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP-VTL--LPTADIELPDAPRFL-----VGTYPWMTSLTPDGKTLLFY  123 (355)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT-TTC--CEEEEEEETTCCCCC-----BSCCGGGEEECTTSSEEEEE
T ss_pred             eEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC-CCC--CEEEEEecCCcceee-----cCCCCceEEEecCCCeeEEe
Confidence            6899999999999863         456777643 234  445555555332211     11345679999999999999


Q ss_pred             eCCC-CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           76 NWLH-GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        76 nRgh-~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ++.. ..+.+++.   ..++.+..+.+.+....                        ...+.++.+.+++||+.+++++
T Consensus       124 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~dg~~~~v~~  175 (355)
T d2bbkh_         124 QFSPAPAVGVVDL---EGKAFKRMLDVPDCYHI------------------------FPTAPDTFFMHCRDGSLAKVAF  175 (355)
T ss_dssp             ECSSSCEEEEEET---TTTEEEEEEECCSEEEE------------------------EEEETTEEEEEETTSCEEEEEC
T ss_pred             cCCCCceeeeeec---CCCcEeeEEecCCcceE------------------------eecCCcceEEEcCCCCEEEEEe
Confidence            9865 45666655   34777777776543211                        0111267899999999999987

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.55  E-value=9.6e-07  Score=72.34  Aligned_cols=104  Identities=6%  Similarity=-0.135  Sum_probs=68.1

Q ss_pred             eEEEcCCCCeEEEEecc---------CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEE
Q 027522            4 RFLHDPSKDIGFVGCAL---------ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYF   74 (222)
Q Consensus         4 r~afhP~g~~aYvv~EL---------sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYv   74 (222)
                      .++|+|||+++|+.+.-         +.+|.++... ++  +....+..+.....  .   +-..+..+.+|+||+.+|+
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~-t~--~~~~~~~~~~~~~~--~---~~~~~~~~~~s~dg~~~~v  141 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV-TF--LPIADIELPDAPRF--D---VGPYSWMNANTPNNADLLF  141 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECC-CC--cEEEEEecCCccee--E---eccCCCcEEEEeCCCcEEE
Confidence            58999999999999864         3556666542 33  33444444422110  0   0023467999999999999


Q ss_pred             EeCC-CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           75 SNWL-HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        75 SnRg-h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .++. .+.+.+++..   ..+.......                                   |..+.++|+|+++|+++
T Consensus       142 ~~~~~~~~~~~~~~~---~~~~~~~~~~-----------------------------------~~~~~~s~~g~~~~v~~  183 (373)
T d2madh_         142 FQFAAGPAVGLVVQG---GSSDDQLLSS-----------------------------------PTCYHIHPGAPSTFYLL  183 (373)
T ss_pred             EEEcCCCceEEeecc---CCeEEEEecc-----------------------------------ceeEEEecCCCcEEEEE
Confidence            9985 4556666542   2444222221                                   78899999999999998

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.40  E-value=1.2e-05  Score=67.86  Aligned_cols=83  Identities=18%  Similarity=0.264  Sum_probs=56.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCe
Q 027522           59 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ  138 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr  138 (222)
                      .+..|.+|||++.||+++...+.|.+|+++.++.............                       ..+   .++|.
T Consensus       178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~-----------------------~~~---~~~Pd  231 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY-----------------------FTG---HEGPD  231 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE-----------------------CCS---SSEEE
T ss_pred             eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeec-----------------------cCC---cccee
Confidence            3578999999999999999999999999964432211111111000                       001   12489


Q ss_pred             eEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522          139 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       139 ~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l  186 (222)
                      -|+++.+|+ ||||+               ..+..|.++  |+ +|++
T Consensus       232 Gl~vD~~G~-l~Va~---------------~~~g~V~~~--~p-~G~~  260 (319)
T d2dg1a1         232 SCCIDSDDN-LYVAM---------------YGQGRVLVF--NK-RGYP  260 (319)
T ss_dssp             EEEEBTTCC-EEEEE---------------ETTTEEEEE--CT-TSCE
T ss_pred             eeeEcCCCC-EEEEE---------------cCCCEEEEE--CC-CCcE
Confidence            999999997 99998               357788888  44 4764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.28  E-value=1.8e-05  Score=65.46  Aligned_cols=98  Identities=13%  Similarity=0.177  Sum_probs=68.2

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++++|||+ +|+..-.+++|+++.  .+|+...  ...++             ..+..|.+++||+ |||+++..+.|..
T Consensus        33 iAv~pdG~-l~vt~~~~~~I~~i~--p~g~~~~--~~~~~-------------~~~~gla~~~dG~-l~v~~~~~~~~~~   93 (302)
T d2p4oa1          33 LASAPDGT-IFVTNHEVGEIVSIT--PDGNQQI--HATVE-------------GKVSGLAFTSNGD-LVATGWNADSIPV   93 (302)
T ss_dssp             EEECTTSC-EEEEETTTTEEEEEC--TTCCEEE--EEECS-------------SEEEEEEECTTSC-EEEEEECTTSCEE
T ss_pred             EEECCCCC-EEEEeCCCCEEEEEe--CCCCEEE--EEcCC-------------CCcceEEEcCCCC-eEEEecCCceEEE
Confidence            58899997 688888899998885  4565432  11221             3457899999999 8999999999988


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ++... ..++.......                          ..+..    |+.++++++| ++|+++
T Consensus        94 ~~~~~-~~~~~~~~~~~--------------------------~~~~~----~n~i~~~~~g-~~~v~~  130 (302)
T d2p4oa1          94 VSLVK-SDGTVETLLTL--------------------------PDAIF----LNGITPLSDT-QYLTAD  130 (302)
T ss_dssp             EEEEC-TTSCEEEEEEC--------------------------TTCSC----EEEEEESSSS-EEEEEE
T ss_pred             EEecc-cccceeecccc--------------------------CCccc----cceeEEccCC-CEEeec
Confidence            88743 33433111111                          12444    8999999999 578887

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.21  E-value=1.2e-05  Score=67.33  Aligned_cols=133  Identities=14%  Similarity=0.216  Sum_probs=87.8

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCC-CeeEEE--EEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDG-SWNHEV--AISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g-~~~~~q--~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      -++++|+++.+|+..-.+..|++|.++.++ ......  .+....          .+..+-.|.+..+|+ |||+.|+.+
T Consensus       152 g~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~----------~~g~pdG~~vD~~Gn-lWva~~~~g  220 (295)
T d2ghsa1         152 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG----------IKGGMDGSVCDAEGH-IWNARWGEG  220 (295)
T ss_dssp             EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT----------SSSEEEEEEECTTSC-EEEEEETTT
T ss_pred             eeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCc----------ccccccceEEcCCCC-EEeeeeCCC
Confidence            468999999999999999999999987443 222111  122211          114568899999996 999999999


Q ss_pred             cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEEC-CCCCEEEEEeCCCCcc
Q 027522           81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS-LDGKRLYVTNSLFSAW  159 (222)
Q Consensus        81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~ls-pdGk~LyvaNsl~~~w  159 (222)
                      .|.+|   +| .++++..|.+-                           .++    |-++++- +|++.||||.+- ...
T Consensus       221 ~V~~~---dp-~G~~~~~i~lP---------------------------~~~----~T~~~FGG~d~~~LyvTta~-~~~  264 (295)
T d2ghsa1         221 AVDRY---DT-DGNHIARYEVP---------------------------GKQ----TTCPAFIGPDASRLLVTSAR-EHL  264 (295)
T ss_dssp             EEEEE---CT-TCCEEEEEECS---------------------------CSB----EEEEEEESTTSCEEEEEEBC-TTC
T ss_pred             ceEEe---cC-CCcEeeEecCC---------------------------CCc----eEEEEEeCCCCCEEEEEECC-cCC
Confidence            99998   44 37788888761                           233    7788884 899999999741 111


Q ss_pred             ccccccccccCCcEEEEEEeeCCCCC
Q 027522          160 DCQFYPELKEKGSHMLQIDVNSEKGG  185 (222)
Q Consensus       160 d~Q~yp~~~s~~~~i~~~dvd~~~G~  185 (222)
                      +++. ...-..++.+|+++.+ ..|.
T Consensus       265 ~~~~-~~~~p~~G~l~~~~~~-~~G~  288 (295)
T d2ghsa1         265 DDDA-ITANPQHGLTFELGIE-VKGR  288 (295)
T ss_dssp             CHHH-HHHCTTTTCEEECSSC-CCCC
T ss_pred             ChhH-hccCCCCceEEEEcCC-CCCc
Confidence            1110 0000135678888653 3453

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.18  E-value=1.1e-05  Score=65.44  Aligned_cols=108  Identities=8%  Similarity=0.091  Sum_probs=70.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++++|+|+ +|+.+-....|.++..+  +....    .+...   +.      ..+..|.++++|+ ||||++..+.|..
T Consensus       145 i~~~~~g~-~~v~~~~~~~i~~~d~~--~~~~~----~~~~~---~~------~~p~gi~~d~~g~-l~vsd~~~~~i~~  207 (260)
T d1rwia_         145 VAVDNSGN-VYVTDTDNNRVVKLEAE--SNNQV----VLPFT---DI------TAPWGIAVDEAGT-VYVTEHNTNQVVK  207 (260)
T ss_dssp             EEECTTCC-EEEEEGGGTEEEEECTT--TCCEE----ECCCS---SC------CSEEEEEECTTCC-EEEEETTTTEEEE
T ss_pred             eeecCCCC-Eeeeccccccccccccc--cceee----eeecc---cc------CCCccceeeeeee-eeeeecCCCEEEE
Confidence            57889887 68887777888888654  32211    11111   11      4568999999996 8999998888877


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY  164 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y  164 (222)
                      |..+ ....++    ....                         +-..    |..|+++++|+ ||||+           
T Consensus       208 ~~~~-~~~~~~----~~~~-------------------------~~~~----P~~i~~d~~g~-l~vad-----------  241 (260)
T d1rwia_         208 LLAG-STTSTV----LPFT-------------------------GLNT----PLAVAVDSDRT-VYVAD-----------  241 (260)
T ss_dssp             ECTT-CSCCEE----CCCC-------------------------SCCC----EEEEEECTTCC-EEEEE-----------
T ss_pred             EeCC-CCeEEE----EccC-------------------------CCCC----eEEEEEeCCCC-EEEEE-----------
Confidence            7432 111111    1100                         1123    99999999996 89998           


Q ss_pred             cccccCCcEEEEEEe
Q 027522          165 PELKEKGSHMLQIDV  179 (222)
Q Consensus       165 p~~~s~~~~i~~~dv  179 (222)
                          ..+..|.+++.
T Consensus       242 ----~~~~rI~~i~~  252 (260)
T d1rwia_         242 ----RGNDRVVKLTS  252 (260)
T ss_dssp             ----GGGTEEEEECC
T ss_pred             ----CCCCEEEEEeC
Confidence                35778888843

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.15  E-value=2.4e-05  Score=64.05  Aligned_cols=99  Identities=10%  Similarity=0.079  Sum_probs=67.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC-CCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL-HGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg-h~sI~   83 (222)
                      +++.+++ .+|+..+-.+.|.+|..  +|++  ...+...     |.     -..+..|.++++|+ |||+.+. +..|.
T Consensus       162 i~~d~~g-~i~v~d~~~~~V~~~d~--~G~~--~~~~g~~-----g~-----~~~P~giavD~~G~-i~Vad~~~~~~v~  225 (279)
T d1q7fa_         162 VVVNDKQ-EIFISDNRAHCVKVFNY--EGQY--LRQIGGE-----GI-----TNYPIGVGINSNGE-ILIADNHNNFNLT  225 (279)
T ss_dssp             EEECSSS-EEEEEEGGGTEEEEEET--TCCE--EEEESCT-----TT-----SCSEEEEEECTTCC-EEEEECSSSCEEE
T ss_pred             eeeccce-eEEeeeccccceeeeec--CCce--eeeeccc-----cc-----ccCCcccccccCCe-EEEEECCCCcEEE
Confidence            5667776 47888888888888864  4544  2222211     11     14579999999998 8888875 44688


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|+    ..++++..+...+.                         +..    |..+++++||+ |||++
T Consensus       226 ~f~----~~G~~~~~~~~~~~-------------------------~~~----p~~vav~~dG~-l~V~~  261 (279)
T d1q7fa_         226 IFT----QDGQLISALESKVK-------------------------HAQ----CFDVALMDDGS-VVLAS  261 (279)
T ss_dssp             EEC----TTSCEEEEEEESSC-------------------------CSC----EEEEEEETTTE-EEEEE
T ss_pred             EEC----CCCCEEEEEeCCCC-------------------------CCC----EeEEEEeCCCc-EEEEe
Confidence            884    23777666655321                         333    99999999995 89987

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.14  E-value=8.2e-05  Score=61.74  Aligned_cols=103  Identities=7%  Similarity=0.087  Sum_probs=68.8

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|+|+++.+..+ +.+|.+|..+ .+++...+...       |..     .....|.+|||+++|..+.. ++.|.
T Consensus        12 ~~~~s~dg~~la~~~~-~~~i~iw~~~-~~~~~~~~~l~-------gH~-----~~V~~l~fsp~~~~l~s~s~-D~~i~   76 (371)
T d1k8kc_          12 CHAWNKDRTQIAICPN-NHEVHIYEKS-GNKWVQVHELK-------EHN-----GQVTGVDWAPDSNRIVTCGT-DRNAY   76 (371)
T ss_dssp             EEEECTTSSEEEEECS-SSEEEEEEEE-TTEEEEEEEEE-------CCS-----SCEEEEEEETTTTEEEEEET-TSCEE
T ss_pred             EEEECCCCCEEEEEeC-CCEEEEEECC-CCCEEEEEEec-------CCC-----CCEEEEEECCCCCEEEEEEC-CCeEE
Confidence            3689999999988766 6778888764 35554443322       110     34689999999999977654 67899


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|++..   ..........+.                             .+....++++|+|++|+++.
T Consensus        77 vWd~~~---~~~~~~~~~~~~-----------------------------~~~v~~i~~~p~~~~l~~~s  114 (371)
T d1k8kc_          77 VWTLKG---RTWKPTLVILRI-----------------------------NRAARCVRWAPNEKKFAVGS  114 (371)
T ss_dssp             EEEEET---TEEEEEEECCCC-----------------------------SSCEEEEEECTTSSEEEEEE
T ss_pred             EEeecc---cccccccccccc-----------------------------cccccccccccccccceeec
Confidence            999954   222211222110                             11267899999999999885

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=5.1e-05  Score=61.87  Aligned_cols=104  Identities=9%  Similarity=0.091  Sum_probs=67.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+|++++...  +.+|.+|..+..............  ..+        .....|.+||||++|.++.. .+.|.+
T Consensus        57 v~fs~~g~~latg~--dg~V~iWd~~~~~~~~~~~~~~~~--~h~--------~~I~~v~~s~dg~~l~s~~~-dg~i~i  123 (337)
T d1gxra_          57 VTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCL--NRD--------NYIRSCKLLPDGCTLIVGGE-ASTLSI  123 (337)
T ss_dssp             EEECSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEECS--CTT--------SBEEEEEECTTSSEEEEEES-SSEEEE
T ss_pred             EEECCCCCEEEEEE--CCEEEEEEccCCcccceeEEeeec--CCC--------CcEEEEEEcCCCCEEEEeec-cccccc
Confidence            58999999999876  678988877533222222222211  111        44689999999999987765 678999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++.. .++++...+...                           ...    -..++++|++++|+++.
T Consensus       124 wd~~~-~~~~~~~~~~~~---------------------------~~~----v~~~~~~~~~~~l~s~~  160 (337)
T d1gxra_         124 WDLAA-PTPRIKAELTSS---------------------------APA----CYALAISPDSKVCFSCC  160 (337)
T ss_dssp             EECCC-C--EEEEEEECS---------------------------SSC----EEEEEECTTSSEEEEEE
T ss_pred             ccccc-cccccccccccc---------------------------ccc----ccccccccccccccccc
Confidence            99953 445553332210                           011    35778999999988775

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=0.00012  Score=60.73  Aligned_cols=106  Identities=8%  Similarity=0.059  Sum_probs=71.3

Q ss_pred             EeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            3 IRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         3 vr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      +-+.|++..+.+|....-..+|.+...+....-...++  +.....         ..+..|++..-++.||+++.+.+.|
T Consensus        33 ~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~--~~~~~~---------~~p~glAvD~~~~~lY~~d~~~~~I  101 (266)
T d1ijqa1          33 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDI---------QAPDGLAVDWIHSNIYWTDSVLGTV  101 (266)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC--------CEE--EECSSC---------SCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEE--EEeCCC---------CCcceEEEeeccceEEEEecCCCEE
Confidence            34789999999999988888898887753211111111  111111         3357899999999999999999999


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .+++++..  ... ..+..                           ....    |+.++++|...+||+++
T Consensus       102 ~v~~~~g~--~~~-~~~~~---------------------------~~~~----P~~l~vd~~~g~ly~~~  138 (266)
T d1ijqa1         102 SVADTKGV--KRK-TLFRE---------------------------NGSK----PRAIVVDPVHGFMYWTD  138 (266)
T ss_dssp             EEEETTSS--SEE-EEEEC---------------------------TTCC----EEEEEEETTTTEEEEEE
T ss_pred             EeEecCCc--eEE-EEEcC---------------------------CCCC----cceEEEEcccCeEEEec
Confidence            99988432  211 11111                           1234    99999999999999998

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=5.6e-05  Score=62.78  Aligned_cols=112  Identities=18%  Similarity=0.210  Sum_probs=76.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC-cEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG-DIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~-sI~   83 (222)
                      +|+++-++.+|+.+.-.++|.++..+  |...  .++ +. .   +-      ..+.+|.++|..++||+++++.. .|.
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~--g~~~--~~~-~~-~---~~------~~P~~l~vd~~~g~ly~~~~~~~~~I~  146 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTK--GVKR--KTL-FR-E---NG------SKPRAIVVDPVHGFMYWTDWGTPAKIK  146 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT--SSSE--EEE-EE-C---TT------CCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             EEEeeccceEEEEecCCCEEEeEecC--CceE--EEE-Ec-C---CC------CCcceEEEEcccCeEEEeccCCCccee
Confidence            78899999999999999999999874  4332  111 11 1   11      44699999999999999999854 565


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccc
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQF  163 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~  163 (222)
                      ....+  +....  .+...                          ....    |..+++++.+++||+++          
T Consensus       147 r~~~d--Gs~~~--~l~~~--------------------------~~~~----p~gl~iD~~~~~lYw~d----------  182 (266)
T d1ijqa1         147 KGGLN--GVDIY--SLVTE--------------------------NIQW----PNGITLDLLSGRLYWVD----------  182 (266)
T ss_dssp             EEETT--SCCEE--EEECS--------------------------SCSC----EEEEEEETTTTEEEEEE----------
T ss_pred             EeccC--CCcee--ccccc--------------------------ccce----eeEEEeeccccEEEEec----------
Confidence            55552  22211  11110                          0123    99999999999999999          


Q ss_pred             ccccccCCcEEEEEEee
Q 027522          164 YPELKEKGSHMLQIDVN  180 (222)
Q Consensus       164 yp~~~s~~~~i~~~dvd  180 (222)
                           +....|.++|.|
T Consensus       183 -----~~~~~I~~~~~d  194 (266)
T d1ijqa1         183 -----SKLHSISSIDVN  194 (266)
T ss_dssp             -----TTTTEEEEEETT
T ss_pred             -----CCcCEEEEEECC
Confidence                 235566667664

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.01  E-value=1.6e-05  Score=73.25  Aligned_cols=98  Identities=12%  Similarity=0.076  Sum_probs=75.9

Q ss_pred             CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE-------
Q 027522           10 SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI-------   82 (222)
Q Consensus        10 ~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI-------   82 (222)
                      ||+|+||.+-.++.|+++..+   .++..|.+.+|..           ...-.+++++++|..||.|-+..++       
T Consensus        98 DGrylFVNDkan~RVAvIdl~---~fkt~kIi~iPn~-----------~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~  163 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCD---VMKCDAILEIPNA-----------KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT  163 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETT---TTEEEEEEECSSC-----------CSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred             ceeEEEEEcCCCceEEEEECc---ceeeeEEEecCCC-----------CCCceeecccCCCeEEEEccCccccccCCCCc
Confidence            799999999999999999874   5677888888632           2346788999999999998655444       


Q ss_pred             ---------EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           83 ---------RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        83 ---------~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                               .+|.+-|.++.+..-+|.++|                            .    |.++.+|+||||+|+++
T Consensus       164 ~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g----------------------------~----ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         164 NMEDVANYVNVFTAVDADKWEVAWQVLVSG----------------------------N----LDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             STTCGG-EEEEEEEEETTTTEEEEEEEESS----------------------------C----CCCEEECSSSSEEEEEE
T ss_pred             cccchhhcceEEEEEecCCceEEEEeeeCC----------------------------C----hhccccCCCCCEEEEEe
Confidence                     334333455677777787743                            2    88999999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.96  E-value=1.1e-05  Score=64.33  Aligned_cols=93  Identities=12%  Similarity=-0.006  Sum_probs=58.3

Q ss_pred             EcC-CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEE-eCCCCcEEE
Q 027522            7 HDP-SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS-NWLHGDIRQ   84 (222)
Q Consensus         7 fhP-~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvS-nRgh~sI~v   84 (222)
                      |+| ||+++=..  ..++|+++..+ .|..  .   .++.   .        ....++..|||||+|+++ ++..+.|.+
T Consensus        10 fSP~dG~~~a~~--~~g~v~v~d~~-~~~~--~---~~~~---~--------~~v~~~~~spDg~~l~~~~~~~g~~v~v   70 (360)
T d1k32a3          10 FSPLDGDLIAFV--SRGQAFIQDVS-GTYV--L---KVPE---P--------LRIRYVRRGGDTKVAFIHGTREGDFLGI   70 (360)
T ss_dssp             EEECGGGCEEEE--ETTEEEEECTT-SSBE--E---ECSC---C--------SCEEEEEECSSSEEEEEEEETTEEEEEE
T ss_pred             ccCCCCCEEEEE--ECCeEEEEECC-CCcE--E---EccC---C--------CCEEEEEECCCCCEEEEEEcCCCCEEEE
Confidence            899 88765433  35788888542 2322  2   2221   1        346899999999999765 444457888


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |+...   +++. ++..                            .   .+..+.+++||||++|+++.
T Consensus        71 ~d~~~---~~~~-~~~~----------------------------~---~~~v~~~~~spdg~~l~~~~  104 (360)
T d1k32a3          71 YDYRT---GKAE-KFEE----------------------------N---LGNVFAMGVDRNGKFAVVAN  104 (360)
T ss_dssp             EETTT---CCEE-ECCC----------------------------C---CCSEEEEEECTTSSEEEEEE
T ss_pred             EECCC---CcEE-EeeC----------------------------C---CceEEeeeecccccccceec
Confidence            87742   3331 1110                            0   11267899999999999887

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.95  E-value=0.00018  Score=60.55  Aligned_cols=81  Identities=19%  Similarity=0.325  Sum_probs=57.0

Q ss_pred             eeEEEEcCCCC----EEEEEeCCCCcEEEEEecCCCCCeEEEE-EEecceeecCCceeeeeCCCCCCCCCCccccCcccC
Q 027522           60 ITDFLISLDDR----FLYFSNWLHGDIRQYNIEDPKNPVLTGQ-IWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR  134 (222)
Q Consensus        60 ~adI~iSpDgr----fLYvSnRgh~sI~vf~i~d~~~~~L~~~-v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~  134 (222)
                      +-.|.++||+.    +|||+....+.|..|+++.+  +.+... +..  .+                       .+. -.
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~--g~~~~~~~~~--~~-----------------------~~~-~~  225 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP--AKIENKKVWG--HI-----------------------PGT-HE  225 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET--TEEEEEEEEE--EC-----------------------CCC-SS
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCc--cccceeeEEE--Ec-----------------------ccc-cc
Confidence            46799999876    89999999999999999543  444321 111  00                       011 12


Q ss_pred             CCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522          135 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       135 ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l  186 (222)
                      ++|.-|+++.+|+ ||||+               ..+..|.++  |+++|.+
T Consensus       226 ~~pdGiavD~~Gn-lyVa~---------------~~~g~I~~~--dp~~g~~  259 (314)
T d1pjxa_         226 GGADGMDFDEDNN-LLVAN---------------WGSSHIEVF--GPDGGQP  259 (314)
T ss_dssp             CEEEEEEEBTTCC-EEEEE---------------ETTTEEEEE--CTTCBSC
T ss_pred             ccceeeEEecCCc-EEEEE---------------cCCCEEEEE--eCCCCEE
Confidence            3499999999996 89998               357788888  6677765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.94  E-value=0.00016  Score=60.38  Aligned_cols=95  Identities=16%  Similarity=0.202  Sum_probs=64.1

Q ss_pred             CceeEEEEcCCCCEEEEEeC---CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccC
Q 027522           58 GLITDFLISLDDRFLYFSNW---LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR  134 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnR---gh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~  134 (222)
                      +.+.|+.+.|+|++.+.+..   ..+.-.+|++.+   +++. .+.. + +                         .   
T Consensus       103 ~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~---g~~~-~~~~-~-~-------------------------~---  148 (295)
T d2ghsa1         103 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK---GKVT-KLFA-D-I-------------------------S---  148 (295)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET---TEEE-EEEE-E-E-------------------------S---
T ss_pred             ccceeeEECCCCCEEEEeccccccccceeEeeecC---CcEE-EEee-c-c-------------------------C---
Confidence            45789999999997665543   223456677743   3331 1111 0 0                         1   


Q ss_pred             CCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCC
Q 027522          135 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDG  202 (222)
Q Consensus       135 ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g  202 (222)
                       .|+-+++|+|+++||++.               +.+..|.++++|.+.+.+.-....++++..++.+
T Consensus       149 -~~Ng~~~s~d~~~l~~~d---------------t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~  200 (295)
T d2ghsa1         149 -IPNSICFSPDGTTGYFVD---------------TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGG  200 (295)
T ss_dssp             -SEEEEEECTTSCEEEEEE---------------TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSE
T ss_pred             -CcceeeecCCCceEEEee---------------cccceeeEeeecccccccccceEEEeccCccccc
Confidence             288899999999999998               5678888899888777665555667787665444

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.92  E-value=7.3e-05  Score=59.36  Aligned_cols=99  Identities=10%  Similarity=0.027  Sum_probs=63.3

Q ss_pred             eEEEcCCCCeEEEEeccCc-eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCALAS-TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELss-tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      .++|+|||+++++.++-.. +|.++.. +.|...  +   +..    .      +.....+.+||||++|.+++. .+.+
T Consensus        47 ~~~~spDg~~l~~~~~~~g~~v~v~d~-~~~~~~--~---~~~----~------~~~v~~~~~spdg~~l~~~~~-~~~~  109 (360)
T d1k32a3          47 YVRRGGDTKVAFIHGTREGDFLGIYDY-RTGKAE--K---FEE----N------LGNVFAMGVDRNGKFAVVAND-RFEI  109 (360)
T ss_dssp             EEEECSSSEEEEEEEETTEEEEEEEET-TTCCEE--E---CCC----C------CCSEEEEEECTTSSEEEEEET-TSEE
T ss_pred             EEEECCCCCEEEEEEcCCCCEEEEEEC-CCCcEE--E---eeC----C------CceEEeeeecccccccceecc-cccc
Confidence            4789999999988776543 5666544 334332  1   111    1      144688999999999987764 5678


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      .+|+++.   .+........                               .+..+.+++||||++|+++.
T Consensus       110 ~~~~~~~---~~~~~~~~~~-------------------------------~~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3         110 MTVDLET---GKPTVIERSR-------------------------------EAMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             EEEETTT---CCEEEEEECS-------------------------------SSCCCCEEECTTSCEEEEEE
T ss_pred             ccccccc---cceeeeeecc-------------------------------cccccchhhccceeeeeeec
Confidence            8898743   3332212110                               01267899999999998663

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.92  E-value=0.00029  Score=58.27  Aligned_cols=105  Identities=7%  Similarity=0.003  Sum_probs=68.3

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .++|+|+++++....+ +.+|.+|..+ ++.+....  .+..  ..        .....|..|||+++|+++. +.+.|.
T Consensus        56 ~l~fsp~~~~l~s~s~-D~~i~vWd~~-~~~~~~~~--~~~~--~~--------~~v~~i~~~p~~~~l~~~s-~d~~i~  120 (371)
T d1k8kc_          56 GVDWAPDSNRIVTCGT-DRNAYVWTLK-GRTWKPTL--VILR--IN--------RAARCVRWAPNEKKFAVGS-GSRVIS  120 (371)
T ss_dssp             EEEEETTTTEEEEEET-TSCEEEEEEE-TTEEEEEE--ECCC--CS--------SCEEEEEECTTSSEEEEEE-TTSSEE
T ss_pred             EEEECCCCCEEEEEEC-CCeEEEEeec-cccccccc--cccc--cc--------ccccccccccccccceeec-ccCcce
Confidence            3679999998877665 8899999774 34444332  2221  11        3468899999999998776 578899


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +|+++.. ..........                             +...+....++++|||++|.++.
T Consensus       121 i~~~~~~-~~~~~~~~~~-----------------------------~~~~~~v~~v~~~p~~~~l~s~s  160 (371)
T d1k8kc_         121 ICYFEQE-NDWWVCKHIK-----------------------------KPIRSTVLSLDWHPNSVLLAAGS  160 (371)
T ss_dssp             EEEEETT-TTEEEEEEEC-----------------------------TTCCSCEEEEEECTTSSEEEEEE
T ss_pred             eeeeecc-cccccccccc-----------------------------cccccccccccccccccceeccc
Confidence            9999653 2322111111                             00112256789999999987765

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.87  E-value=0.00012  Score=60.36  Aligned_cols=108  Identities=11%  Similarity=0.043  Sum_probs=64.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++++|+| .+|+...-...|+++..+ .+....   ....+.... ..  .........-|+.|+.+||+++...+.|..
T Consensus       118 i~~~~~g-~~~v~~~~~~~i~~~~~~-~~~~~~---~~~~~~~~~-~~--~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~  189 (302)
T d2p4oa1         118 ITPLSDT-QYLTADSYRGAIWLIDVV-QPSGSI---WLEHPMLAR-SN--SESVFPAANGLKRFGNFLYVSNTEKMLLLR  189 (302)
T ss_dssp             EEESSSS-EEEEEETTTTEEEEEETT-TTEEEE---EEECGGGSC-SS--TTCCSCSEEEEEEETTEEEEEETTTTEEEE
T ss_pred             eEEccCC-CEEeeccccccceeeecc-CCccee---EecCCccce-ee--ccCcccccccccccCCceeeecCCCCeEEe
Confidence            4677887 457887778888887653 232221   111110000 00  011223444567789999999999999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |+++....... ..+..                           .+..    |..|++++||+ ||||+
T Consensus       190 ~~~~~~~~~~~-~~~~~---------------------------~~~~----pdgia~d~dG~-l~va~  225 (302)
T d2p4oa1         190 IPVDSTDKPGE-PEIFV---------------------------EQTN----IDDFAFDVEGN-LYGAT  225 (302)
T ss_dssp             EEBCTTSCBCC-CEEEE---------------------------ESCC----CSSEEEBTTCC-EEEEC
T ss_pred             ccccccccccc-ccccc---------------------------CCCC----CcceEECCCCC-EEEEE
Confidence            99854322211 11111                           1233    99999999997 89987

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=0.00019  Score=59.61  Aligned_cols=114  Identities=8%  Similarity=-0.020  Sum_probs=75.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++++.-++.+|+.+.-...|.++..+  |...  .++  ...   +-      ..+.+|++.|...+||.++++.+.-++
T Consensus        84 iAvD~~~~~lY~~d~~~~~I~~~~~d--g~~~--~~l--~~~---~l------~~p~~l~vdp~~g~ly~t~~~~~~~~I  148 (263)
T d1npea_          84 IALDHLGRTIFWTDSQLDRIEVAKMD--GTQR--RVL--FDT---GL------VNPRGIVTDPVRGNLYWTDWNRDNPKI  148 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT--SCSC--EEE--ECS---SC------SSEEEEEEETTTTEEEEEECCSSSCEE
T ss_pred             EEEeccCCeEEEeccCCCEEEEEecC--CceE--EEE--ecc---cc------cCCcEEEEecccCcEEEeecCCCCcEE
Confidence            57788888999999888899999875  3221  111  111   11      346899999999999999998766555


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY  164 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y  164 (222)
                      +.++-.+..+.  .+...                           +   .+.|+.+++++.+++||+++           
T Consensus       149 ~r~~~dG~~~~--~i~~~---------------------------~---~~~P~glaiD~~~~~lYw~d-----------  185 (263)
T d1npea_         149 ETSHMDGTNRR--ILAQD---------------------------N---LGLPNGLTFDAFSSQLCWVD-----------  185 (263)
T ss_dssp             EEEETTSCCCE--EEECT---------------------------T---CSCEEEEEEETTTTEEEEEE-----------
T ss_pred             EEecCCCCCce--eeeee---------------------------c---ccccceEEEeecCcEEEEEe-----------
Confidence            55532232221  11110                           1   11399999999999999998           


Q ss_pred             cccccCCcEEEEEEee
Q 027522          165 PELKEKGSHMLQIDVN  180 (222)
Q Consensus       165 p~~~s~~~~i~~~dvd  180 (222)
                          +....|.++|.|
T Consensus       186 ----~~~~~I~~~~~~  197 (263)
T d1npea_         186 ----AGTHRAECLNPA  197 (263)
T ss_dssp             ----TTTTEEEEEETT
T ss_pred             ----CCCCEEEEEECC
Confidence                345667777554

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.83  E-value=0.00035  Score=54.43  Aligned_cols=100  Identities=15%  Similarity=0.075  Sum_probs=66.7

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+++++++.++ +.+|.++.....   ..........          .......+.+||||++|+++.. .+.|.+
T Consensus       232 v~~~p~~~~l~s~s~-d~~i~~~~~~~~---~~~~~~~~~~----------~~~~i~~~~~s~~~~~l~~g~~-dg~i~i  296 (340)
T d1tbga_         232 ICFFPNGNAFATGSD-DATCRLFDLRAD---QELMTYSHDN----------IICGITSVSFSKSGRLLLAGYD-DFNCNV  296 (340)
T ss_dssp             EEECTTSSEEEEEET-TSCEEEEETTTT---EEEEEECCTT----------CCSCEEEEEECSSSCEEEEEET-TSCEEE
T ss_pred             EEECCCCCEEEEEeC-CCeEEEEeeccc---cccccccccc----------ccCceEEEEECCCCCEEEEEEC-CCEEEE
Confidence            578999999888776 778888876421   2222222111          0134688999999999988774 678999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++..   ++++..+..                             ..  +.-..++++|||++|+.+.
T Consensus       297 wd~~~---~~~~~~~~~-----------------------------H~--~~V~~l~~s~d~~~l~s~s  331 (340)
T d1tbga_         297 WDALK---ADRAGVLAG-----------------------------HD--NRVSCLGVTDDGMAVATGS  331 (340)
T ss_dssp             EETTT---CCEEEEECC-----------------------------CS--SCEEEEEECTTSSCEEEEE
T ss_pred             EECCC---CcEEEEEcC-----------------------------CC--CCEEEEEEeCCCCEEEEEc
Confidence            98843   445433321                             10  1146789999999998776

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.00042  Score=56.18  Aligned_cols=96  Identities=8%  Similarity=0.004  Sum_probs=64.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+++++++.++ ++.|.+|.... +...  +   ..  ...        .....|.+||||++|+++. ..+.|.+
T Consensus       230 l~~~~~~~~l~~~~~-d~~i~i~d~~~-~~~~--~---~~--~~~--------~~i~~v~~s~~g~~l~s~s-~Dg~i~i  291 (337)
T d1gxra_         230 LGYCPTGEWLAVGME-SSNVEVLHVNK-PDKY--Q---LH--LHE--------SCVLSLKFAYCGKWFVSTG-KDNLLNA  291 (337)
T ss_dssp             EEECTTSSEEEEEET-TSCEEEEETTS-SCEE--E---EC--CCS--------SCEEEEEECTTSSEEEEEE-TTSEEEE
T ss_pred             EEEcccccccceecc-ccccccccccc-cccc--c---cc--ccc--------cccceEEECCCCCEEEEEe-CCCeEEE
Confidence            678999999887765 77788887642 2211  1   11  001        4468999999999998766 4688999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |++..   ++.+.+...                            ..    ..+.+++||||++|+++.
T Consensus       292 wd~~~---~~~~~~~~~----------------------------~~----~v~~~~~s~d~~~l~t~s  325 (337)
T d1gxra_         292 WRTPY---GASIFQSKE----------------------------SS----SVLSCDISVDDKYIVTGS  325 (337)
T ss_dssp             EETTT---CCEEEEEEC----------------------------SS----CEEEEEECTTSCEEEEEE
T ss_pred             EECCC---CCEEEEccC----------------------------CC----CEEEEEEeCCCCEEEEEe
Confidence            98843   334322211                            11    267899999999998886

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.76  E-value=0.00021  Score=57.69  Aligned_cols=108  Identities=11%  Similarity=0.131  Sum_probs=67.8

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++++++++ +|+...-++.+.++..+  +....    ....   .+.      ..+.+|.++++|+ ||++++..+.|.+
T Consensus       103 iavd~~g~-i~v~d~~~~~~~~~~~~--~~~~~----~~~~---~~~------~~p~~i~~~~~g~-~~v~~~~~~~i~~  165 (260)
T d1rwia_         103 LAVDTQGA-VYVADRGNNRVVKLAAG--SKTQT----VLPF---TGL------NDPDGVAVDNSGN-VYVTDTDNNRVVK  165 (260)
T ss_dssp             EEECTTCC-EEEEEGGGTEEEEECTT--CSSCE----ECCC---CSC------CSCCEEEECTTCC-EEEEEGGGTEEEE
T ss_pred             ccccccce-eEeeccccccccccccc--cceee----eeee---ccc------CCcceeeecCCCC-Eeeeccccccccc
Confidence            46677775 46666666666666542  22211    1111   112      3458999999998 7999999988888


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY  164 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y  164 (222)
                      |+.+  .+.+.  .+..                          .+..    .|.-++++++|+ |||++           
T Consensus       166 ~d~~--~~~~~--~~~~--------------------------~~~~----~p~gi~~d~~g~-l~vsd-----------  199 (260)
T d1rwia_         166 LEAE--SNNQV--VLPF--------------------------TDIT----APWGIAVDEAGT-VYVTE-----------  199 (260)
T ss_dssp             ECTT--TCCEE--ECCC--------------------------SSCC----SEEEEEECTTCC-EEEEE-----------
T ss_pred             cccc--cceee--eeec--------------------------cccC----CCccceeeeeee-eeeee-----------
Confidence            8652  22222  0110                          0122    399999999995 89999           


Q ss_pred             cccccCCcEEEEEEe
Q 027522          165 PELKEKGSHMLQIDV  179 (222)
Q Consensus       165 p~~~s~~~~i~~~dv  179 (222)
                          ..+..+++++.
T Consensus       200 ----~~~~~i~~~~~  210 (260)
T d1rwia_         200 ----HNTNQVVKLLA  210 (260)
T ss_dssp             ----TTTTEEEEECT
T ss_pred             ----cCCCEEEEEeC
Confidence                45778888844

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=0.00089  Score=55.34  Aligned_cols=101  Identities=15%  Similarity=0.116  Sum_probs=73.3

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|++..+.+|....-.++|.+...+... .   +++  ...   +-      ..+..|++..-++.||++++..+.|.
T Consensus        40 ~ld~D~~~~~iywsd~~~~~I~~~~l~g~~-~---~~v--~~~---~~------~~p~~iAvD~~~~~lY~~d~~~~~I~  104 (263)
T d1npea_          40 GLAFDCVDKVVYWTDISEPSIGRASLHGGE-P---TTI--IRQ---DL------GSPEGIALDHLGRTIFWTDSQLDRIE  104 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEESSSCC-C---EEE--ECT---TC------CCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEEeCCCEEEEEECCCCeEEEEEcccCC-c---EEE--EEe---cc------ccccEEEEeccCCeEEEeccCCCEEE
Confidence            488999999999999888999999875321 1   111  111   11      34689999999999999999999999


Q ss_pred             EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      +.+.+....-.+    ...+                          -..    |+.++++|...+||+++
T Consensus       105 ~~~~dg~~~~~l----~~~~--------------------------l~~----p~~l~vdp~~g~ly~t~  140 (263)
T d1npea_         105 VAKMDGTQRRVL----FDTG--------------------------LVN----PRGIVTDPVRGNLYWTD  140 (263)
T ss_dssp             EEETTSCSCEEE----ECSS--------------------------CSS----EEEEEEETTTTEEEEEE
T ss_pred             EEecCCceEEEE----eccc--------------------------ccC----CcEEEEecccCcEEEee
Confidence            998843221111    1111                          123    99999999999999998

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.73  E-value=0.00038  Score=54.56  Aligned_cols=69  Identities=17%  Similarity=0.224  Sum_probs=46.4

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|+++++++..+ +.+|.+|... +++.....  ...     .      +.....|.+|||+++|+++.. .+.|.+
T Consensus       142 ~~~s~~~~~l~~g~~-dg~i~~~d~~-~~~~~~~~--~~~-----~------~~~i~~~~~~~~~~~l~~~~~-d~~i~~  205 (299)
T d1nr0a2         142 VALSNDKQFVAVGGQ-DSKVHVYKLS-GASVSEVK--TIV-----H------PAEITSVAFSNNGAFLVATDQ-SRKVIP  205 (299)
T ss_dssp             EEECTTSCEEEEEET-TSEEEEEEEE-TTEEEEEE--EEE-----C------SSCEEEEEECTTSSEEEEEET-TSCEEE
T ss_pred             ccccccccccccccc-cccccccccc-cccccccc--ccc-----c------ccccccccccccccccccccc-cccccc
Confidence            578888888877765 5677777653 23222111  111     0      144688999999999988765 678999


Q ss_pred             EEecC
Q 027522           85 YNIED   89 (222)
Q Consensus        85 f~i~d   89 (222)
                      |++..
T Consensus       206 ~~~~~  210 (299)
T d1nr0a2         206 YSVAN  210 (299)
T ss_dssp             EEGGG
T ss_pred             ccccc
Confidence            99854

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.68  E-value=0.00033  Score=57.39  Aligned_cols=70  Identities=13%  Similarity=0.013  Sum_probs=48.0

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC-CcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH-GDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh-~sI~   83 (222)
                      ++|+|+|+++.+..+ +.+|.+|.... +...........    .        ....+|.+|||+++|.++.-+. ..+.
T Consensus        64 ~~~sp~g~~latg~~-dg~i~iwd~~~-~~~~~~~~~~~~----~--------~~v~~v~~s~d~~~l~~~~~~~~~~~~  129 (311)
T d1nr0a1          64 AKTSPSGYYCASGDV-HGNVRIWDTTQ-TTHILKTTIPVF----S--------GPVKDISWDSESKRIAAVGEGRERFGH  129 (311)
T ss_dssp             EEECTTSSEEEEEET-TSEEEEEESSS-TTCCEEEEEECS----S--------SCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred             EEEeCCCCeEecccc-CceEeeeeeec-cccccccccccc----c--------Ccccccccccccccccccccccccccc
Confidence            468999999876666 88999998753 333323322211    1        3468999999999999887544 3477


Q ss_pred             EEEec
Q 027522           84 QYNIE   88 (222)
Q Consensus        84 vf~i~   88 (222)
                      +|+++
T Consensus       130 v~~~~  134 (311)
T d1nr0a1         130 VFLFD  134 (311)
T ss_dssp             EEETT
T ss_pred             ccccc
Confidence            88874

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.65  E-value=0.00023  Score=65.26  Aligned_cols=17  Identities=29%  Similarity=0.429  Sum_probs=16.6

Q ss_pred             CeeEEECCCCCEEEEEe
Q 027522          137 PQMIQLSLDGKRLYVTN  153 (222)
Q Consensus       137 Pr~~~lspdGk~LyvaN  153 (222)
                      |--+.+|||||++||||
T Consensus       277 PHGV~vSPDGKyi~VaG  293 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAG  293 (459)
T ss_dssp             CCCEEECTTSSEEEEEC
T ss_pred             CCceEECCCCCEEEEeC
Confidence            99999999999999999

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=0.00029  Score=57.69  Aligned_cols=85  Identities=18%  Similarity=0.137  Sum_probs=55.9

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|+++++++.+. +.+|.+|... +++.  ............+.     ......|.+||||++|+.++. ++.|.
T Consensus       194 ~v~~~p~~~~l~~~~~-d~~v~~~d~~-~~~~--~~~~~~~~~~~~~h-----~~~V~~~~~s~~~~~l~tgs~-Dg~v~  263 (311)
T d1nr0a1         194 SVRYNPDGSLFASTGG-DGTIVLYNGV-DGTK--TGVFEDDSLKNVAH-----SGSVFGLTWSPDGTKIASASA-DKTIK  263 (311)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEETT-TCCE--EEECBCTTSSSCSS-----SSCEEEEEECTTSSEEEEEET-TSEEE
T ss_pred             ccccCccccccccccc-cccccccccc-cccc--cccccccccccccc-----cccccccccCCCCCEEEEEeC-CCeEE
Confidence            4689999999888765 7788888764 2321  22222221111111     134688999999999998874 67899


Q ss_pred             EEEecCCCCCeEEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWV  101 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~  101 (222)
                      +|++.   +++++..+..
T Consensus       264 iwd~~---t~~~~~~l~~  278 (311)
T d1nr0a1         264 IWNVA---TLKVEKTIPV  278 (311)
T ss_dssp             EEETT---TTEEEEEEEC
T ss_pred             EEECC---CCcEEEEEEC
Confidence            99884   3677666654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=0.00084  Score=55.85  Aligned_cols=132  Identities=13%  Similarity=-0.023  Sum_probs=72.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC--CcE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH--GDI   82 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh--~sI   82 (222)
                      ++|+|++ ++++.. .+.+|.+|... .++.  ....... ....+.     ......|.+||||++|.+.....  ..|
T Consensus       190 v~~s~dg-~lasgs-~Dg~i~iwd~~-~~~~--~~~~~~~-~~l~~h-----~~~V~~l~~spdg~~l~sgs~D~t~~~i  258 (393)
T d1sq9a_         190 VDISERG-LIATGF-NNGTVQISELS-TLRP--LYNFESQ-HSMINN-----SNSIRSVKFSPQGSLLAIAHDSNSFGCI  258 (393)
T ss_dssp             EEECTTS-EEEEEC-TTSEEEEEETT-TTEE--EEEEECC-C---CC-----CCCEEEEEECSSTTEEEEEEEETTEEEE
T ss_pred             EEECCCC-EEEEEe-CCCcEEEEeec-cccc--ccccccc-cccccc-----cceEEEcccccccceeeeecCCCCccee
Confidence            5789988 443443 47889888764 3322  2222111 111111     14578999999999998876432  348


Q ss_pred             EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522           83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ  162 (222)
Q Consensus        83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q  162 (222)
                      ++|++..   ++++..+.......                +......|..  +.-..+++||||++|+.+.         
T Consensus       259 ~lwd~~~---g~~~~~l~~~~~~~----------------~~~~~~~gH~--~~V~~l~fspd~~~l~S~s---------  308 (393)
T d1sq9a_         259 TLYETEF---GERIGSLSVPTHSS----------------QASLGEFAHS--SWVMSLSFNDSGETLCSAG---------  308 (393)
T ss_dssp             EEEETTT---CCEEEEECBC------------------------CCBSBS--SCEEEEEECSSSSEEEEEE---------
T ss_pred             eeccccc---ceeeeeeccccccc----------------cceeeeeccc--CceeeeccCCCCCeeEEEC---------
Confidence            8888743   45544443211100                0001112321  2246799999999887665         


Q ss_pred             cccccccCCcEEEEEEeeCCCCCe
Q 027522          163 FYPELKEKGSHMLQIDVNSEKGGM  186 (222)
Q Consensus       163 ~yp~~~s~~~~i~~~dvd~~~G~l  186 (222)
                             ...+|...|+  ++|.+
T Consensus       309 -------~D~~v~vWd~--~~g~~  323 (393)
T d1sq9a_         309 -------WDGKLRFWDV--KTKER  323 (393)
T ss_dssp             -------TTSEEEEEET--TTTEE
T ss_pred             -------CCCEEEEEEC--CCCCE
Confidence                   3456666655  67765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.50  E-value=0.00099  Score=54.04  Aligned_cols=99  Identities=13%  Similarity=0.173  Sum_probs=62.5

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++..++|+ .|+..-..+.+.++.  .+|++  ...+... .   +.      ..+..|.++++|+ ||++.+..+.|.+
T Consensus       119 ~avd~~G~-i~v~~~~~~~~~~~~--~~g~~--~~~~g~~-~---~~------~~~~~i~~d~~g~-i~v~d~~~~~V~~  182 (279)
T d1q7fa_         119 VTVDNKGR-IIVVECKVMRVIIFD--QNGNV--LHKFGCS-K---HL------EFPNGVVVNDKQE-IFISDNRAHCVKV  182 (279)
T ss_dssp             EEECTTSC-EEEEETTTTEEEEEC--TTSCE--EEEEECT-T---TC------SSEEEEEECSSSE-EEEEEGGGTEEEE
T ss_pred             eccccCCc-EEEEeeccceeeEec--cCCce--eeccccc-c---cc------cccceeeecccee-EEeeeccccceee
Confidence            45667765 444444456666654  34543  2222221 1   11      4568999999985 8999999999999


Q ss_pred             EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      |+.+    ++++.++..-|.                         ...    |+-++++++|+ ||||+
T Consensus       183 ~d~~----G~~~~~~g~~g~-------------------------~~~----P~giavD~~G~-i~Vad  217 (279)
T d1q7fa_         183 FNYE----GQYLRQIGGEGI-------------------------TNY----PIGVGINSNGE-ILIAD  217 (279)
T ss_dssp             EETT----CCEEEEESCTTT-------------------------SCS----EEEEEECTTCC-EEEEE
T ss_pred             eecC----Cceeeeeccccc-------------------------ccC----CcccccccCCe-EEEEE
Confidence            9652    445444322111                         123    99999999997 99997

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.38  E-value=0.00065  Score=58.67  Aligned_cols=64  Identities=16%  Similarity=0.139  Sum_probs=47.6

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP  137 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP  137 (222)
                      ..+-.|.+|||+++||||....+.|.+|+++.+.+.++...+.+                                .|.|
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l--------------------------------~~~p  253 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF--------------------------------DTLV  253 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC--------------------------------SSEE
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecC--------------------------------CCCC
Confidence            34578999999999999999999999999965444444333333                                2338


Q ss_pred             eeEEECCCCCEEEEEe
Q 027522          138 QMIQLSLDGKRLYVTN  153 (222)
Q Consensus       138 r~~~lspdGk~LyvaN  153 (222)
                      -++.+++++..|++|.
T Consensus       254 DNi~~d~~~g~lwva~  269 (340)
T d1v04a_         254 DNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEEECTTTCCEEEEE
T ss_pred             CccEEecCCCEEEEEE
Confidence            8999987655566664

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.34  E-value=0.0041  Score=53.44  Aligned_cols=129  Identities=17%  Similarity=0.105  Sum_probs=74.8

Q ss_pred             CCCC-eEEEEec--cCceEEEEEeCCC-CCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC------
Q 027522            9 PSKD-IGFVGCA--LASTMVRFSKTQD-GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL------   78 (222)
Q Consensus         9 P~g~-~aYvv~E--LsstV~~~~~d~~-g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg------   78 (222)
                      ++|+ ++||+|-  -.++|-+|..+.+ .++.....+.-+..           ..+-||.+..||+ +|++|-.      
T Consensus       108 ~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~-----------~~pNDv~~~~~g~-fy~Tnd~~~~~~~  175 (340)
T d1v04a_         108 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLL-----------PSVNDIVAVGPEH-FYATNDHYFIDPY  175 (340)
T ss_dssp             TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTC-----------SSEEEEEEEETTE-EEEEESCSCCSHH
T ss_pred             CCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccc-----------cCccceEEecCCC-EEEecCccCcChh
Confidence            3444 6888885  4677888877533 34555555433211           3468999999997 5677621      


Q ss_pred             ---------CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEE
Q 027522           79 ---------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRL  149 (222)
Q Consensus        79 ---------h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~L  149 (222)
                               -....++.. +++.-+.   +.. |                          ..    .|+=+++|||+++|
T Consensus       176 ~~~~e~~~~~~~g~v~~~-~~~~~~~---~~~-~--------------------------l~----~pNGI~~s~d~~~l  220 (340)
T d1v04a_         176 LKSWEMHLGLAWSFVTYY-SPNDVRV---VAE-G--------------------------FD----FANGINISPDGKYV  220 (340)
T ss_dssp             HHHHHHHTTCCCEEEEEE-CSSCEEE---EEE-E--------------------------ES----SEEEEEECTTSSEE
T ss_pred             hhhhhHhhcCCceeEEEE-cCCceEE---EcC-C--------------------------CC----ccceeEECCCCCEE
Confidence                     122334444 2222111   111 1                          12    39999999999999


Q ss_pred             EEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCC
Q 027522          150 YVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDG  202 (222)
Q Consensus       150 yvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g  202 (222)
                      |||.               +.+..|.+++++. ++.++.  ...+++...||+
T Consensus       221 yVa~---------------t~~~~i~~y~~~~-~~~l~~--~~~~~l~~~pDN  255 (340)
T d1v04a_         221 YIAE---------------LLAHKIHVYEKHA-NWTLTP--LRVLSFDTLVDN  255 (340)
T ss_dssp             EEEE---------------GGGTEEEEEEECT-TSCEEE--EEEEECSSEEEE
T ss_pred             EEEe---------------CCCCeEEEEEeCC-Ccccce--EEEecCCCCCCc
Confidence            9998               3466677777764 455443  334555554433

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.005  Score=49.30  Aligned_cols=80  Identities=21%  Similarity=0.209  Sum_probs=46.7

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEE-Eec---CcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAI-SVK---SLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG   80 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~i-s~~---p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~   80 (222)
                      ++|+|+|+++.+.+  +.+|.+|... +|+....... ...   +........+.-......|.+||||++|.++.. .+
T Consensus        68 l~fs~dg~~lasg~--d~~i~iW~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~-dg  143 (388)
T d1erja_          68 VKFSNDGEYLATGC--NKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE-DR  143 (388)
T ss_dssp             EEECTTSSEEEEEC--BSCEEEEETT-TCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET-TS
T ss_pred             EEECCCCCEEEEEe--CCeEEEEEec-ccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccc-cc
Confidence            57899999877654  7888888763 3433211100 000   000000000111244688999999999987774 67


Q ss_pred             cEEEEEec
Q 027522           81 DIRQYNIE   88 (222)
Q Consensus        81 sI~vf~i~   88 (222)
                      .|.+|++.
T Consensus       144 ~v~i~~~~  151 (388)
T d1erja_         144 LIRIWDIE  151 (388)
T ss_dssp             CEEEEETT
T ss_pred             cccccccc
Confidence            89999874

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.13  E-value=0.0026  Score=49.57  Aligned_cols=69  Identities=10%  Similarity=0.053  Sum_probs=46.7

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      -++|+|++++++...+ +.+|.+|..+ +|+.  .   .+.+....        .....|.++|||+++.++  ..+.|.
T Consensus        17 ~l~~s~dg~~l~s~s~-Dg~v~vWd~~-~~~~--~---~~~~~~h~--------~~v~~v~~~~~g~~~~~~--~d~~v~   79 (299)
T d1nr0a2          17 ALSSSADGKTLFSADA-EGHINSWDIS-TGIS--N---RVFPDVHA--------TMITGIKTTSKGDLFTVS--WDDHLK   79 (299)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEETT-TCCE--E---ECSSCSCS--------SCEEEEEECTTSCEEEEE--TTTEEE
T ss_pred             EEEECCCCCEEEEEcC-CCeEEEEECC-CCcE--E---EEEcCCCC--------CcEEEEEeeccceeeccc--ceeeEE
Confidence            3689999999887766 7889888763 3422  1   22221111        346899999999976555  367899


Q ss_pred             EEEecC
Q 027522           84 QYNIED   89 (222)
Q Consensus        84 vf~i~d   89 (222)
                      +|++..
T Consensus        80 ~~~~~~   85 (299)
T d1nr0a2          80 VVPAGG   85 (299)
T ss_dssp             EECSSS
T ss_pred             EeccCC
Confidence            998743

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.01  Score=47.33  Aligned_cols=76  Identities=7%  Similarity=0.104  Sum_probs=44.2

Q ss_pred             eEEEcC-CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDP-SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP-~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      ..+++| +++++++.++ +.+|.++... .+..  ...+........+.     ......|.+|||+++|+++.. .+.|
T Consensus       209 ~~~~~~~~~~~l~~~~~-d~~i~i~~~~-~~~~--~~~~~~~~~~~~~h-----~~~v~~l~~s~~~~~l~s~~~-d~~i  278 (388)
T d1erja_         209 TVAVSPGDGKYIAAGSL-DRAVRVWDSE-TGFL--VERLDSENESGTGH-----KDSVYSVVFTRDGQSVVSGSL-DRSV  278 (388)
T ss_dssp             EEEECSTTCCEEEEEET-TSCEEEEETT-TCCE--EEEEC------CCC-----SSCEEEEEECTTSSEEEEEET-TSEE
T ss_pred             cccccCCCCCeEEEEcC-CCeEEEeecc-cCcc--ceeeccccccccCC-----CCCEEEEEECCCCCEEEEEEC-CCcE
Confidence            445555 5677666655 6778877653 3322  22222221111111     145688999999999987764 6789


Q ss_pred             EEEEecC
Q 027522           83 RQYNIED   89 (222)
Q Consensus        83 ~vf~i~d   89 (222)
                      .+|++..
T Consensus       279 ~iwd~~~  285 (388)
T d1erja_         279 KLWNLQN  285 (388)
T ss_dssp             EEEEC--
T ss_pred             EEEeccC
Confidence            9999954

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.02  E-value=0.0074  Score=46.39  Aligned_cols=104  Identities=20%  Similarity=0.166  Sum_probs=56.9

Q ss_pred             eEEEcCC--CCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEE-EeCCCC
Q 027522            4 RFLHDPS--KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYF-SNWLHG   80 (222)
Q Consensus         4 r~afhP~--g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYv-SnRgh~   80 (222)
                      +++.+|+  |+++..+.+  ..|+++..+ .|..  ++ ++..+            .......+||||++|+. +++...
T Consensus         3 ~~~~sPdi~G~~v~f~~~--~dl~~~d~~-~g~~--~~-Lt~~~------------~~~~~p~~SPDG~~iaf~~~~~~~   64 (281)
T d1k32a2           3 NLLLNPDIHGDRIIFVCC--DDLWEHDLK-SGST--RK-IVSNL------------GVINNARFFPDGRKIAIRVMRGSS   64 (281)
T ss_dssp             CCCEEEEEETTEEEEEET--TEEEEEETT-TCCE--EE-EECSS------------SEEEEEEECTTSSEEEEEEEESTT
T ss_pred             CcccCCCCCCCEEEEEeC--CcEEEEECC-CCCE--EE-EecCC------------CcccCEEECCCCCEEEEEEeeCCC
Confidence            3567899  887665544  468777664 3332  23 22221            23467889999998864 444332


Q ss_pred             ----cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           81 ----DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        81 ----sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                          .|.+++.   ..++.. ++...+.-.       .               +  .....+..+++|||++|+.+.
T Consensus        65 ~~~~~i~~~~~---~~g~~~-~lt~~~~~~-------~---------------~--~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          65 LNTADLYFYNG---ENGEIK-RITYFSGKS-------T---------------G--RRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCEEEEEEEET---TTTEEE-ECCCCCEEE-------E---------------T--TEECSEEEEECTTCCEEEEEC
T ss_pred             CCceEEEEEEe---cCCceE-EeeecCCCc-------c---------------C--ccccccccccCCCCCEEEEEE
Confidence                2444433   223331 122111000       0               0  011267889999999999886

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.99  E-value=0.023  Score=43.64  Aligned_cols=99  Identities=9%  Similarity=0.033  Sum_probs=58.3

Q ss_pred             EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522            6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY   85 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf   85 (222)
                      .+++.+.+.. ....+.+|.+|... ++  +..+++..    ..        .....|.+|||+++|++++ ..+.|.+|
T Consensus       191 ~~~~~~~~~~-~~~~d~~v~i~d~~-~~--~~~~~~~~----h~--------~~i~~v~~~p~~~~l~s~s-~d~~i~~~  253 (340)
T d1tbga_         191 SLAPDTRLFV-SGACDASAKLWDVR-EG--MCRQTFTG----HE--------SDINAICFFPNGNAFATGS-DDATCRLF  253 (340)
T ss_dssp             EECTTSSEEE-EEETTTEEEEEETT-TT--EEEEEECC----CS--------SCEEEEEECTTSSEEEEEE-TTSCEEEE
T ss_pred             ccccccceeE-EeecCceEEEEECC-CC--cEEEEEeC----CC--------CCeEEEEECCCCCEEEEEe-CCCeEEEE
Confidence            3444444443 34446777777653 23  22222211    11        3467899999999998776 47889999


Q ss_pred             EecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522           86 NIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN  153 (222)
Q Consensus        86 ~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN  153 (222)
                      ++..   ..........                             ........++++|+|++|+++.
T Consensus       254 ~~~~---~~~~~~~~~~-----------------------------~~~~~i~~~~~s~~~~~l~~g~  289 (340)
T d1tbga_         254 DLRA---DQELMTYSHD-----------------------------NIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             ETTT---TEEEEEECCT-----------------------------TCCSCEEEEEECSSSCEEEEEE
T ss_pred             eecc---cccccccccc-----------------------------cccCceEEEEECCCCCEEEEEE
Confidence            8853   3232111110                             0011256899999999999887

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.0094  Score=46.00  Aligned_cols=30  Identities=17%  Similarity=0.123  Sum_probs=22.6

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 027522           59 LITDFLISLDDRFLYFSNWLHGDIRQYNIE   88 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~   88 (222)
                      ....-.+||||++++.+.+..+...++..+
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~  201 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQD  201 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred             cccccccccccceeEEEeecCCceeeeEee
Confidence            346678999999998877766666666664

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.0026  Score=48.48  Aligned_cols=59  Identities=15%  Similarity=0.234  Sum_probs=41.4

Q ss_pred             eeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCee
Q 027522           60 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM  139 (222)
Q Consensus        60 ~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~  139 (222)
                      ...|.+||++++|..+. ..+.|.+|++..   .+.+.++..                            +..    ...
T Consensus       254 v~~l~~sp~~~~lasg~-~Dg~v~vWD~~~---~~~l~~~~~----------------------------~~~----~~~  297 (342)
T d1yfqa_         254 VNSIEFSPRHKFLYTAG-SDGIISCWNLQT---RKKIKNFAK----------------------------FNE----DSV  297 (342)
T ss_dssp             EEEEEECTTTCCEEEEE-TTSCEEEEETTT---TEEEEECCC----------------------------CSS----SEE
T ss_pred             ceeEEecCCccEEEEEC-CCCEEEEEECCC---CcEEEEecC----------------------------CCC----CEE
Confidence            56899999999986554 578999999843   444322221                            111    456


Q ss_pred             EEECCCCCEEEEEeC
Q 027522          140 IQLSLDGKRLYVTNS  154 (222)
Q Consensus       140 ~~lspdGk~LyvaNs  154 (222)
                      ++++|+|++|.+|.+
T Consensus       298 ~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         298 VKIACSDNILCLATS  312 (342)
T ss_dssp             EEEEECSSEEEEEEE
T ss_pred             EEEEeCCCEEEEEEc
Confidence            899999999998853

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.041  Score=44.17  Aligned_cols=72  Identities=8%  Similarity=0.046  Sum_probs=47.1

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      ++|+|++++..+.+-.+.+|..|...   ..+.......... .        ......|.+|||+..+.+++-.++.|.+
T Consensus       165 ~~~~~~~~~~~~~~~~d~~v~~~d~~---~~~~~~~~~~~~~-~--------~~~v~~v~~~pd~~~~l~s~~~d~~i~i  232 (325)
T d1pgua1         165 CHLKQSRPMRSMTVGDDGSVVFYQGP---PFKFSASDRTHHK-Q--------GSFVRDVEFSPDSGEFVITVGSDRKISC  232 (325)
T ss_dssp             EEECSSSSCEEEEEETTTEEEEEETT---TBEEEEEECSSSC-T--------TCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred             ccccccccceEEEeeccccccccccc---ccccceecccccC-C--------CCccEEeeeccccceeccccccccceee
Confidence            67999998877767668888777542   2233333322211 1        1446889999986555565556889999


Q ss_pred             EEec
Q 027522           85 YNIE   88 (222)
Q Consensus        85 f~i~   88 (222)
                      |++.
T Consensus       233 wd~~  236 (325)
T d1pgua1         233 FDGK  236 (325)
T ss_dssp             EETT
T ss_pred             eeec
Confidence            9874

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.007  Score=45.94  Aligned_cols=30  Identities=23%  Similarity=0.562  Sum_probs=26.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522           59 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d   89 (222)
                      .+++|.+||||++|.++.+ +++|++|++..
T Consensus        13 ~I~~l~fsp~~~~L~s~s~-Dg~v~iwd~~~   42 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLITSW-DGSLTVYKFDI   42 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEET-TSEEEEEEEET
T ss_pred             CEEEEEEeCCCCEEEEEEC-CCeEEEEEccC
Confidence            4699999999999988764 78999999964

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.036  Score=44.52  Aligned_cols=70  Identities=13%  Similarity=-0.099  Sum_probs=46.0

Q ss_pred             eEEEcCCCCeEEEEec-cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIGFVGCA-LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~aYvv~E-LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      -++|+|+++++.++.. -...+.++.++ .|+.  .+.   ..    +.     ......|.++|++.++.+++-.++.|
T Consensus       120 ~v~~s~~~~~l~~~~~~~~~~~~~~~~~-~~~~--~~~---~~----~h-----~~~v~~~~~~~~~~~~~~~~~~d~~v  184 (325)
T d1pgua1         120 DISWDFEGRRLCVVGEGRDNFGVFISWD-SGNS--LGE---VS----GH-----SQRINACHLKQSRPMRSMTVGDDGSV  184 (325)
T ss_dssp             EEEECTTSSEEEEEECCSSCSEEEEETT-TCCE--EEE---CC----SC-----SSCEEEEEECSSSSCEEEEEETTTEE
T ss_pred             EEEECCCCCccceeeccccceEEEEeec-cccc--cee---ee----ec-----ccccccccccccccceEEEeeccccc
Confidence            3678999988877665 23446666654 2321  121   11    11     03457899999999888877778999


Q ss_pred             EEEEec
Q 027522           83 RQYNIE   88 (222)
Q Consensus        83 ~vf~i~   88 (222)
                      .+|++.
T Consensus       185 ~~~d~~  190 (325)
T d1pgua1         185 VFYQGP  190 (325)
T ss_dssp             EEEETT
T ss_pred             cccccc
Confidence            999873

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.13  Score=41.92  Aligned_cols=65  Identities=11%  Similarity=0.086  Sum_probs=41.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCe
Q 027522           59 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ  138 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr  138 (222)
                      .+..+.+|||| +| +|.-..+.|++|++..   ++.+........              +         .|..  ..-+
T Consensus       186 ~~~~v~~s~dg-~l-asgs~Dg~i~iwd~~~---~~~~~~~~~~~~--------------l---------~~h~--~~V~  235 (393)
T d1sq9a_         186 FATSVDISERG-LI-ATGFNNGTVQISELST---LRPLYNFESQHS--------------M---------INNS--NSIR  235 (393)
T ss_dssp             CCCEEEECTTS-EE-EEECTTSEEEEEETTT---TEEEEEEECCC--------------------------CCC--CCEE
T ss_pred             cEEEEEECCCC-EE-EEEeCCCcEEEEeecc---cccccccccccc--------------c---------cccc--ceEE
Confidence            35678899998 44 5776789999998843   444333322100              0         0110  1258


Q ss_pred             eEEECCCCCEEEEEe
Q 027522          139 MIQLSLDGKRLYVTN  153 (222)
Q Consensus       139 ~~~lspdGk~LyvaN  153 (222)
                      .+++||||++|+++.
T Consensus       236 ~l~~spdg~~l~sgs  250 (393)
T d1sq9a_         236 SVKFSPQGSLLAIAH  250 (393)
T ss_dssp             EEEECSSTTEEEEEE
T ss_pred             Ecccccccceeeeec
Confidence            899999999999885

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.036  Score=41.46  Aligned_cols=61  Identities=7%  Similarity=0.098  Sum_probs=43.1

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522           58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP  137 (222)
Q Consensus        58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP  137 (222)
                      +....+.+||||++|+++. ..+.|.+|++..   ++++..+..                             ..  +.-
T Consensus       248 ~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~---~~~~~~~~~-----------------------------h~--~~V  292 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCA-DDKTLRVWDYKN---KRCMKTLNA-----------------------------HE--HFV  292 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEE-TTTEEEEECCTT---SCCCEEEEC-----------------------------CS--SCE
T ss_pred             CCEEEEEECCCCCEEEEEE-CCCeEEEEECCC---CcEEEEEcC-----------------------------CC--CCE
Confidence            4468899999999998766 467899998853   334333321                             00  114


Q ss_pred             eeEEECCCCCEEEEEe
Q 027522          138 QMIQLSLDGKRLYVTN  153 (222)
Q Consensus       138 r~~~lspdGk~LyvaN  153 (222)
                      ..++++|||++|+.+.
T Consensus       293 ~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         293 TSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             EEEEECSSSSCEEEEE
T ss_pred             EEEEEcCCCCEEEEEe
Confidence            6789999999998876

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.1  Score=38.84  Aligned_cols=26  Identities=12%  Similarity=0.194  Sum_probs=21.5

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeC
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKT   30 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d   30 (222)
                      .++|||+++++....+ +.+|.+|...
T Consensus        22 ~l~~sp~~~~l~s~s~-Dg~i~iWd~~   47 (317)
T d1vyhc1          22 RVIFHPVFSVMVSASE-DATIKVWDYE   47 (317)
T ss_dssp             EEEECSSSSEEEEEES-SSCEEEEETT
T ss_pred             EEEEcCCCCEEEEEeC-CCeEEEEECC
Confidence            4789999999888776 8899988764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.08  Score=40.03  Aligned_cols=63  Identities=13%  Similarity=0.099  Sum_probs=39.5

Q ss_pred             eEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeE
Q 027522           61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI  140 (222)
Q Consensus        61 adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~  140 (222)
                      .-..+++++++|..+. ..+.|++|++..   ++++.++...-.                        .|..  +.-..+
T Consensus       262 ~~~~~~~~~~~~~s~s-~Dg~i~iwd~~t---g~~i~~~~~~~~------------------------~~~~--~~v~~v  311 (342)
T d2ovrb2         262 AVTCLQFNKNFVITSS-DDGTVKLWDLKT---GEFIRNLVTLES------------------------GGSG--GVVWRI  311 (342)
T ss_dssp             CEEEEEECSSEEEEEE-TTSEEEEEETTT---CCEEEEEEECTT------------------------GGGT--CEEEEE
T ss_pred             ceeecccCCCeeEEEc-CCCEEEEEECCC---CCEEEEEecccC------------------------CCCC--CCEEEE
Confidence            3445667778876665 578999999843   566655543100                        0111  114678


Q ss_pred             EECCCCCEEEEEe
Q 027522          141 QLSLDGKRLYVTN  153 (222)
Q Consensus       141 ~lspdGk~LyvaN  153 (222)
                      +++|+|++|.++.
T Consensus       312 ~~s~~~~~la~g~  324 (342)
T d2ovrb2         312 RASNTKLVCAVGS  324 (342)
T ss_dssp             EECSSEEEEEEEC
T ss_pred             EECCCCCEEEEEe
Confidence            9999998777776

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.17  E-value=0.011  Score=45.29  Aligned_cols=53  Identities=15%  Similarity=0.198  Sum_probs=34.1

Q ss_pred             EEcCC--CCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEE
Q 027522           64 LISLD--DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQ  141 (222)
Q Consensus        64 ~iSpD--grfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~  141 (222)
                      .+|||  |++|.....  ++|.+++++. +.++.   +..+.                          |     .-+..+
T Consensus         5 ~~sPdi~G~~v~f~~~--~dl~~~d~~~-g~~~~---Lt~~~--------------------------~-----~~~~p~   47 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC--DDLWEHDLKS-GSTRK---IVSNL--------------------------G-----VINNAR   47 (281)
T ss_dssp             CEEEEEETTEEEEEET--TEEEEEETTT-CCEEE---EECSS--------------------------S-----EEEEEE
T ss_pred             ccCCCCCCCEEEEEeC--CcEEEEECCC-CCEEE---EecCC--------------------------C-----cccCEE
Confidence            68999  988876643  4688888843 33322   32210                          1     146678


Q ss_pred             ECCCCCEEEEEe
Q 027522          142 LSLDGKRLYVTN  153 (222)
Q Consensus       142 lspdGk~LyvaN  153 (222)
                      +|||||+|+.+.
T Consensus        48 ~SPDG~~iaf~~   59 (281)
T d1k32a2          48 FFPDGRKIAIRV   59 (281)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEE
Confidence            999999997653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.86  E-value=0.046  Score=45.96  Aligned_cols=71  Identities=18%  Similarity=0.378  Sum_probs=41.2

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEE-Ee----CCC
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYF-SN----WLH   79 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYv-Sn----Rgh   79 (222)
                      +.+.+++.++|.  + +++|.++... +|+-+  ..  +....+...     ...+..+.+|||||+|.. ++    |.|
T Consensus        22 ~~W~~d~~~~~~--~-~~~~~~~~~~-t~~~~--~~--~~~~~~~~~-----~~~i~~~~~SpDg~~i~~~~~~~~~~r~   88 (470)
T d2bgra1          22 LRWISDHEYLYK--Q-ENNILVFNAE-YGNSS--VF--LENSTFDEF-----GHSINDYSISPDGQFILLEYNYVKQWRH   88 (470)
T ss_dssp             CEECSSSEEEEE--S-SSCEEEEETT-TCCEE--EE--ECTTTTTTS-----SSCCCEEEECTTSSEEEEEEEEEECSSS
T ss_pred             CEeCCCCEEEEE--c-CCcEEEEECC-CCCEE--EE--Echhhhhhc-----cCccceeEECCCCCEEEEEECCcceeee
Confidence            445688887774  3 6788777653 44322  11  222222221     144689999999999764 43    122


Q ss_pred             ---CcEEEEEec
Q 027522           80 ---GDIRQYNIE   88 (222)
Q Consensus        80 ---~sI~vf~i~   88 (222)
                         +.+.+|++.
T Consensus        89 s~~~~~~l~d~~  100 (470)
T d2bgra1          89 SYTASYDIYDLN  100 (470)
T ss_dssp             CEEEEEEEEETT
T ss_pred             ccCceEEEEECC
Confidence               466777764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.73  E-value=0.067  Score=47.01  Aligned_cols=62  Identities=16%  Similarity=0.335  Sum_probs=38.9

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCc--ccccccCCCCCCceeEEEEcCC---CCEEEEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSL--KVQNWILPEMPGLITDFLISLD---DRFLYFS   75 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~--~~~g~~~~~~~~~~adI~iSpD---grfLYvS   75 (222)
                      =++|.|+|+ +||....+.+|.++.. +++..+.  +..++..  ...+.      ...-+|+++||   .++||+|
T Consensus        31 ~la~~pdg~-llVter~~G~i~~v~~-~~g~~~~--i~~~~~~~~~~~ge------~GLLgia~~Pdf~~n~~iYvs   97 (450)
T d1crua_          31 ALLWGPDNQ-IWLTERATGKILRVNP-ESGSVKT--VFQVPEIVNDADGQ------NGLLGFAFHPDFKNNPYIYIS   97 (450)
T ss_dssp             EEEECTTSC-EEEEETTTCEEEEECT-TTCCEEE--EEECTTCCCCTTSS------CSEEEEEECTTTTTSCEEEEE
T ss_pred             EEEEeCCCe-EEEEEecCCEEEEEEC-CCCcEee--cccCCccccccCCC------CceeeEEeCCCCccCCEEEEE
Confidence            378999996 5555556789988853 3454433  3333311  11222      44579999995   8999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.13  Score=39.19  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=42.0

Q ss_pred             EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522            6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY   85 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf   85 (222)
                      +++|++....+.++-+++|.++....   ..  ....+. ....        .....|.+||||++|.+++ ..+.|.+|
T Consensus       125 ~~~~~~~~~~v~~~~~~~v~~~~~~~---~~--~~~~~~-~~~~--------~~v~~~~~s~~~~~l~~g~-~dg~i~i~  189 (287)
T d1pgua2         125 AVSLSQNYVAVGLEEGNTIQVFKLSD---LE--VSFDLK-TPLR--------AKPSYISISPSETYIAAGD-VMGKILLY  189 (287)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTE---EE--EEEECS-SCCS--------SCEEEEEECTTSSEEEEEE-TTSCEEEE
T ss_pred             eeeccCcceeeeccccceeeeeeccc---cc--eeeeee-eccC--------CceeEEEeccCcccccccc-ccccccce
Confidence            45666666666666555565554320   11  111111 1111        3468999999999998887 46789999


Q ss_pred             EecC
Q 027522           86 NIED   89 (222)
Q Consensus        86 ~i~d   89 (222)
                      ++..
T Consensus       190 d~~~  193 (287)
T d1pgua2         190 DLQS  193 (287)
T ss_dssp             ETTT
T ss_pred             eecc
Confidence            9854

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.42  E-value=0.093  Score=44.00  Aligned_cols=65  Identities=11%  Similarity=0.047  Sum_probs=37.4

Q ss_pred             EEEcCCCCeEEEEecc--------CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEe
Q 027522            5 FLHDPSKDIGFVGCAL--------ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN   76 (222)
Q Consensus         5 ~afhP~g~~aYvv~EL--------sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSn   76 (222)
                      +.|+|||+++....+-        .++++++... +|+.     ..+.          ..+........||||+.|....
T Consensus        67 ~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~-~~~~-----~~l~----------~~~~~~~~~~~SPDG~~ia~~~  130 (470)
T d2bgra1          67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN-KRQL-----ITEE----------RIPNNTQWVTWSPVGHKLAYVW  130 (470)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEE-----CCSS----------CCCTTEEEEEECSSTTCEEEEE
T ss_pred             eEECCCCCEEEEEECCcceeeeccCceEEEEECC-CCcc-----cccc----------cCCccccccccccCcceeeEee
Confidence            5699999987665541        2334444432 2321     1111          1124457889999999887643


Q ss_pred             CCCCcEEEEEe
Q 027522           77 WLHGDIRQYNI   87 (222)
Q Consensus        77 Rgh~sI~vf~i   87 (222)
                        .+.+.+++.
T Consensus       131 --~~~l~~~~~  139 (470)
T d2bgra1         131 --NNDIYVKIE  139 (470)
T ss_dssp             --TTEEEEESS
T ss_pred             --cccceEEEC
Confidence              346776655

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.35  Score=36.62  Aligned_cols=69  Identities=14%  Similarity=0.018  Sum_probs=39.5

Q ss_pred             eEEEcCCCCeE-EEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522            4 RFLHDPSKDIG-FVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI   82 (222)
Q Consensus         4 r~afhP~g~~a-Yvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI   82 (222)
                      -.+|+|||+.+ |+..+-... ..+.++.++.. ..+.....             ........||||+.|....+..+..
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~-~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~spdg~~i~~~~~~~~~~  107 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRS-ALVIQTLANGA-VRQVASFP-------------RHNGAPAFSPDGSKLAFALSKTGSL  107 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSC-EEEEEETTTCC-EEEEECCS-------------SCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             eeEECCCCCEEEEEEeeccCc-ceeeeecccCc-eeEEeeee-------------cccccceecCCCCeeeEeeecCCcc
Confidence            46899998776 555544333 23333322222 22222111             2346788999999999887766665


Q ss_pred             EEEEe
Q 027522           83 RQYNI   87 (222)
Q Consensus        83 ~vf~i   87 (222)
                      ..+..
T Consensus       108 ~~~~~  112 (269)
T d2hqsa1         108 NLYVM  112 (269)
T ss_dssp             EEEEE
T ss_pred             ceeec
Confidence            55444

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.31  Score=36.98  Aligned_cols=59  Identities=15%  Similarity=0.196  Sum_probs=40.5

Q ss_pred             EEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEE
Q 027522           62 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQ  141 (222)
Q Consensus        62 dI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~  141 (222)
                      ...+++++..+.+++...+.|.+|++.+   .+.......                              ...+....++
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~---~~~~~~~~~------------------------------~~~~~v~~~~  169 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSD---LEVSFDLKT------------------------------PLRAKPSYIS  169 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTE---EEEEEECSS------------------------------CCSSCEEEEE
T ss_pred             eeeeeccCcceeeeccccceeeeeeccc---cceeeeeee------------------------------ccCCceeEEE
Confidence            4568899999999988777899998743   112111000                              0112267899


Q ss_pred             ECCCCCEEEEEe
Q 027522          142 LSLDGKRLYVTN  153 (222)
Q Consensus       142 lspdGk~LyvaN  153 (222)
                      +||||++|++++
T Consensus       170 ~s~~~~~l~~g~  181 (287)
T d1pgua2         170 ISPSETYIAAGD  181 (287)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             eccCcccccccc
Confidence            999999999987

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.19  Score=43.78  Aligned_cols=18  Identities=28%  Similarity=0.110  Sum_probs=14.9

Q ss_pred             CCCeeEEECCCCCEEEEE
Q 027522          135 GGPQMIQLSLDGKRLYVT  152 (222)
Q Consensus       135 ggPr~~~lspdGk~Lyva  152 (222)
                      +....+..||||++|+.+
T Consensus       173 ~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         173 KTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             SSSEEEEECTTSSEEEEE
T ss_pred             cccceEEECCCCCeEEEE
Confidence            446678899999999886

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.3  Score=35.77  Aligned_cols=24  Identities=13%  Similarity=0.195  Sum_probs=19.6

Q ss_pred             EEcCCCCEEEEEeCCCCcEEEEEec
Q 027522           64 LISLDDRFLYFSNWLHGDIRQYNIE   88 (222)
Q Consensus        64 ~iSpDgrfLYvSnRgh~sI~vf~i~   88 (222)
                      .+++||++|..+. .+++|++|++.
T Consensus        20 c~~~d~~~l~sgs-~Dg~i~vWd~~   43 (293)
T d1p22a2          20 CLQYDDQKIVSGL-RDNTIKIWDKN   43 (293)
T ss_dssp             EEECCSSEEEEEE-SSSCEEEEESS
T ss_pred             EEEEcCCEEEEEe-CCCeEEEEECC
Confidence            4799999987665 47899999984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.26  E-value=2.1  Score=31.86  Aligned_cols=66  Identities=9%  Similarity=0.108  Sum_probs=43.0

Q ss_pred             EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522            6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY   85 (222)
Q Consensus         6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf   85 (222)
                      ++++++++++..++ +.+|.+|... +++  ..+++.--    +        .....|.+|+|+ +|+. .-..+.|.+|
T Consensus        18 c~~~~~~~l~tgs~-Dg~i~vWd~~-~~~--~~~~l~~H----~--------~~V~~l~~s~~~-~l~s-~s~D~~i~iw   79 (355)
T d1nexb2          18 CLQFEDNYVITGAD-DKMIRVYDSI-NKK--FLLQLSGH----D--------GGVWALKYAHGG-ILVS-GSTDRTVRVW   79 (355)
T ss_dssp             EEEEETTEEEEEET-TTEEEEEETT-TTE--EEEEEECC----S--------SCEEEEEEETTT-EEEE-EETTCCEEEE
T ss_pred             EEEECCCEEEEEeC-CCeEEEEECC-CCc--EEEEEECC----C--------CCEEEEEEcCCC-EEEE-Eecccccccc
Confidence            46677888877765 8899999763 342  23332211    1        346889999976 4443 3357899999


Q ss_pred             EecC
Q 027522           86 NIED   89 (222)
Q Consensus        86 ~i~d   89 (222)
                      ++..
T Consensus        80 ~~~~   83 (355)
T d1nexb2          80 DIKK   83 (355)
T ss_dssp             ETTT
T ss_pred             cccc
Confidence            8853

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.95  E-value=2.7  Score=31.00  Aligned_cols=26  Identities=19%  Similarity=0.326  Sum_probs=18.9

Q ss_pred             EEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522           63 FLISLDDRFLYFSNWLHGDIRQYNIED   89 (222)
Q Consensus        63 I~iSpDgrfLYvSnRgh~sI~vf~i~d   89 (222)
                      ..+++++++|+++. ..+.|.+|++..
T Consensus       221 ~~~~~~~~~l~s~s-~d~~i~iwd~~~  246 (342)
T d2ovrb2         221 SGMELKDNILVSGN-ADSTVKIWDIKT  246 (342)
T ss_dssp             EEEEEETTEEEEEE-TTSCEEEEETTT
T ss_pred             eEEecCCCEEEEEc-CCCEEEEEeccc
Confidence            34566778886665 478999999854

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.23  E-value=0.56  Score=40.82  Aligned_cols=54  Identities=19%  Similarity=0.190  Sum_probs=37.0

Q ss_pred             EEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEE
Q 027522           71 FLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLY  150 (222)
Q Consensus        71 fLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Ly  150 (222)
                      -|+++.+..+.|..+.++..........+....                         .+.+    ||+++..|||..||
T Consensus       370 ~lfvg~l~~~~i~~v~~~~~~~~~~~~~~~~~~-------------------------~~~R----~rdv~~gpDGs~ly  420 (450)
T d1crua_         370 TLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFK-------------------------SNNR----YRDVIASPDGNVLY  420 (450)
T ss_dssp             EEEEEBSSSCCEEEEEECTTSSSEEEEEEEESC-------------------------CSSC----EEEEEECTTSSCEE
T ss_pred             CEEEEECcCCEEEEEEEcCCCceeeEEEEeccC-------------------------CCCC----ceEEEECCCCCEEE
Confidence            356788888999999996543332322222211                         1334    99999999999999


Q ss_pred             EEe
Q 027522          151 VTN  153 (222)
Q Consensus       151 vaN  153 (222)
                      |+.
T Consensus       421 v~~  423 (450)
T d1crua_         421 VLT  423 (450)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            987

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.88  E-value=4  Score=30.23  Aligned_cols=67  Identities=16%  Similarity=0.270  Sum_probs=41.1

Q ss_pred             eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522            4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR   83 (222)
Q Consensus         4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~   83 (222)
                      .+.|+|+++++++..+ +++|.++... ++..  ...+..    ..        .....+.+  ++++|+.+. ..+.|.
T Consensus       206 ~~~~~~~~~~~~~~~~-d~~i~i~d~~-~~~~--~~~~~~----h~--------~~v~~~~~--~~~~l~~~~-~dg~i~  266 (355)
T d1nexb2         206 STIYDHERKRCISASM-DTTIRIWDLE-NGEL--MYTLQG----HT--------ALVGLLRL--SDKFLVSAA-ADGSIR  266 (355)
T ss_dssp             EEEEETTTTEEEEEET-TSCEEEEETT-TCCE--EEEECC----CS--------SCCCEEEE--CSSEEEEEC-TTSEEE
T ss_pred             cccccccceeeecccc-cceEEeeecc-cccc--cccccc----cc--------cccccccc--ccceeeeee-cccccc
Confidence            4678899888877765 6778777653 3322  222111    11        22345555  567887665 478999


Q ss_pred             EEEecC
Q 027522           84 QYNIED   89 (222)
Q Consensus        84 vf~i~d   89 (222)
                      +|++.+
T Consensus       267 iwd~~~  272 (355)
T d1nexb2         267 GWDAND  272 (355)
T ss_dssp             EEETTT
T ss_pred             cccccc
Confidence            999854

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.06  E-value=8  Score=32.80  Aligned_cols=104  Identities=14%  Similarity=0.189  Sum_probs=60.3

Q ss_pred             cCC-CCeEEEEeccCceEEEEEe--CCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522            8 DPS-KDIGFVGCALASTMVRFSK--TQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ   84 (222)
Q Consensus         8 hP~-g~~aYvv~ELsstV~~~~~--d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v   84 (222)
                      +|. |....++++-...+..|..  +++|.+..+.+-++.           .++.+-.|++..+.+.||+|-= ...|+.
T Consensus       138 ~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-----------~~~q~EGCVvDde~~~LyisEE-~~Giw~  205 (353)
T d1h6la_         138 SQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-----------MNSQTEGMAADDEYGSLYIAEE-DEAIWK  205 (353)
T ss_dssp             CTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-----------CSSCEEEEEEETTTTEEEEEET-TTEEEE
T ss_pred             cCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-----------CCCccceEEEeCCCCcEEEecC-ccceEE
Confidence            454 4443344555667766644  345555554433221           1145678999999999999964 345677


Q ss_pred             EEecCCC---CCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEEC--CCCC-EEEEEe
Q 027522           85 YNIEDPK---NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS--LDGK-RLYVTN  153 (222)
Q Consensus        85 f~i~d~~---~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~ls--pdGk-~LyvaN  153 (222)
                      |+.+ +.   .++++..+                             .|..+.+-|.-++|=  .+|+ +|+|+.
T Consensus       206 ~~a~-~~~~~~~~~i~~~-----------------------------~g~~l~~D~EGlaiy~~~~~~GylivSs  250 (353)
T d1h6la_         206 FSAE-PDGGSNGTVIDRA-----------------------------DGRHLTPDIEGLTIYYAADGKGYLLASS  250 (353)
T ss_dssp             EESS-TTSCSCCEEEEEC-----------------------------SSSSCCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             EEec-cCCCccceeeecc-----------------------------cCccccCCccccEEEEcCCCCeEEEEEc
Confidence            7663 33   23332111                             244556667778874  4555 777776

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=83.99  E-value=2.9  Score=35.75  Aligned_cols=88  Identities=13%  Similarity=0.084  Sum_probs=55.6

Q ss_pred             EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCC-EEEEEeCCCCcEE
Q 027522            5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDR-FLYFSNWLHGDIR   83 (222)
Q Consensus         5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgr-fLYvSnRgh~sI~   83 (222)
                      +++++..+.+|+..| .--|+++..+.++.-....+...-...+.+.      ...-+|.-..|+. ||.||.-|.++.+
T Consensus       185 CVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D------~EGlaiy~~~~~~GylivSsQG~n~f~  257 (353)
T d1h6la_         185 MAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGRHLTPD------IEGLTIYYAADGKGYLLASSQGNSSYA  257 (353)
T ss_dssp             EEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSSSCCSC------EEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             EEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeecccCccccCC------ccccEEEEcCCCCeEEEEEcCCCCeEE
Confidence            578999999999988 6678988876443222222223221112111      1224455556655 9999999999999


Q ss_pred             EEEecCCCCCeEEEEEEe
Q 027522           84 QYNIEDPKNPVLTGQIWV  101 (222)
Q Consensus        84 vf~i~d~~~~~L~~~v~~  101 (222)
                      +|+...+  -+.++...+
T Consensus       258 vydr~~~--~~~~g~F~i  273 (353)
T d1h6la_         258 IYERQGQ--NKYVADFQI  273 (353)
T ss_dssp             EEESSTT--CCEEEEEEE
T ss_pred             EEecCCC--ccccceEEE
Confidence            9988543  256666555

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=81.02  E-value=9.4  Score=29.88  Aligned_cols=30  Identities=3%  Similarity=-0.001  Sum_probs=23.7

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 027522           59 LITDFLISLDDRFLYFSNWLHGDIRQYNIE   88 (222)
Q Consensus        59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~   88 (222)
                      .++...+.+||+.+.+-..+.+++.+|+..
T Consensus        77 ~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          77 FCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             ceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            356778899998877766677899999764