Citrus Sinensis ID: 027531

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDKMK
Secondary Structure (PSIPRED)
ccccccEEEEEEccccccccccccccccccEEEEcccccEEEEEEEEEEEEEEEEEccccccHHHHccccccHHHHcccHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccEEEEEEEcccEEEEEEEccccccccccEEccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEccEEEccEEEccccccEEEEEEEEEEEEEEccEEEEEEEEEEEEEccHHHHHHHHHccccHHHHHccHHHHHHHHHccccEEEEEEEcccEEHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccEEccccEEEEEEEcccEEEEEEccccccccccEEEEcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MNPSPSVTELQVenvtftpsvqppgstkshflggagergleiegkFVKFTAIGvyleddavpllagkwkgktAEELTESVEFFRDVVTGPFEKFMKVTMIlpltgaqySEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVfkdeifppgssilftqspgsltisfskdgsipkdgVAVIESNLLSEAVLESMigkngvspaAKKSLAERISALLNVTSDKMK
Flexible Loop (DISEMBL)
MNPSPSVTELQVENVtftpsvqppgstKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISAllnvtsdkmk
Low Complexity Region (SEG)
MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDKMK
Disordered region (IsUnstruct)
*******************************LGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISF*****IPKDGVAVIESNLLSEAVLE********************************
Disordered Region (DISOPRED)
*****SV*ELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVP*****************VEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCI****************IEKFTEVFKDEIFPPGSSILFTQSPGSLTISFS************IESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVT*****
Disordered Region (DISEMBL)
*********LQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDKMK
Disordered Region (DISPRO)
*****SVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNV******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDKMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q9ZWR1	222	Chalcone--flavonone isome	no	no	1.0	1.0	0.995	1e-124
A5HBK6	219	Chalcone--flavonone isome	N/A	no	0.968	0.981	0.759	1e-89
Q45QI7	230	Chalcone--flavonone isome	N/A	no	0.968	0.934	0.743	2e-89
A2IBF8	227	Chalcone--flavonone isome	N/A	no	0.968	0.947	0.773	5e-89
A5ANT9	234	Chalcone--flavonone isome	yes	no	0.963	0.914	0.762	2e-88
P51117	234	Chalcone--flavonone isome	yes	no	0.963	0.914	0.758	8e-88
O65333	256	Chalcone--flavonone isome	N/A	no	0.959	0.832	0.738	3e-87
Q4AE11	237	Chalcone--flavonone isome	N/A	no	0.941	0.881	0.766	4e-87
Q4AE12	237	Chalcone--flavonone isome	N/A	no	0.941	0.881	0.752	8e-86
Q8H0G1	221	Chalcone--flavonone isome	N/A	no	0.950	0.954	0.732	2e-84

>sp|Q9ZWR1|CFI_CITSI Chalcone--flavonone isomerase OS=Citrus sinensis GN=CHI PE=2 SV=1

 Score =  444 bits (1142), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/222 (99%), Positives = 222/222 (100%)

Query: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60
           MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA
Sbjct: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60

Query: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120
           VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW
Sbjct: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120

Query: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIE 180
           KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIE
Sbjct: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIE 180

Query: 181 SNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDKMK 222
           SNLLSEAVLESMIGKNGVSPAAKKSLAER+SALLNVTSDKMK
Sbjct: 181 SNLLSEAVLESMIGKNGVSPAAKKSLAERLSALLNVTSDKMK 222

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.
Citrus sinensis (taxid: 2711)
EC: 5EC: .EC: 5EC: .EC: 1EC: .EC: 6

>sp|A5HBK6|CFI_PYRCO Chalcone--flavonone isomerase OS=Pyrus communis GN=CHI PE=2 SV=1

 Score =  329 bits (843), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 164/216 (75%), Positives = 186/216 (86%), Gaps = 1/216 (0%)

Query: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60
           M P PS+  LQVE   F PSV+PPGS+ + FLGGAG RGLEI+G FVKFTAIGVYLED+A
Sbjct: 1   MAPPPSLAGLQVEATAFPPSVKPPGSSNTLFLGGAGVRGLEIQGNFVKFTAIGVYLEDNA 60

Query: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120
           VPLLA KWKGKTAEEL+ESVEFFRD+VTGPFEKF++VT ILPLTG QYSEKV+ENC+A W
Sbjct: 61  VPLLAVKWKGKTAEELSESVEFFRDIVTGPFEKFIQVTTILPLTGQQYSEKVSENCVAFW 120

Query: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVI 179
           K  GIYTDAE KAIEKF EVFKD+ FPPG+SILFTQSP GSLTI FSKD S+P+   AVI
Sbjct: 121 KSVGIYTDAEGKAIEKFIEVFKDQNFPPGASILFTQSPKGSLTICFSKDASVPEAANAVI 180

Query: 180 ESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           E+ LLSEAVLES++GK+GVSPAAK+SLA R+S LLN
Sbjct: 181 ENKLLSEAVLESILGKHGVSPAAKRSLAARLSELLN 216

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Pyrus communis (taxid: 23211)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q45QI7|CFI_CAMSI Chalcone--flavonone isomerase OS=Camellia sinensis GN=CHI PE=2 SV=2

 Score =  328 bits (840), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 162/218 (74%), Positives = 188/218 (86%), Gaps = 3/218 (1%)

Query: 1   MNPS--PSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLED 58
           M+PS  PSV ++Q+E+  F P+V+PPG++K  FLGGAGERGLEI+GKF+KFTAIGVYLED
Sbjct: 1   MSPSQSPSVAQVQIESHVFPPTVKPPGTSKPFFLGGAGERGLEIQGKFIKFTAIGVYLED 60

Query: 59  DAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIA 118
            A+P LA KWKGKTAEELT+SV+FFRD+V+GPFEKF +VTMILPLTG QYSEKV ENC+A
Sbjct: 61  SAIPSLAVKWKGKTAEELTDSVDFFRDIVSGPFEKFTQVTMILPLTGQQYSEKVTENCVA 120

Query: 119 IWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVA 177
            WK  G YTDAEAKAIEKF EVFKDE FPPG SILFTQSP GSLTI+FSKDGS+P+ G  
Sbjct: 121 YWKAVGTYTDAEAKAIEKFIEVFKDETFPPGGSILFTQSPLGSLTIAFSKDGSLPETGTV 180

Query: 178 VIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           V+E+  LSEAVLES+IGK+GVSPAAKKSLA R+S LL 
Sbjct: 181 VMENKQLSEAVLESIIGKHGVSPAAKKSLAARMSELLK 218

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Camellia sinensis (taxid: 4442)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|A2IBF8|CFI_GOSHI Chalcone--flavonone isomerase OS=Gossypium hirsutum GN=CHI PE=2 SV=1

 Score =  327 bits (837), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 167/216 (77%), Positives = 186/216 (86%), Gaps = 1/216 (0%)

Query: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60
           M+ S SVTELQVEN TF P+V+PPGSTK+ FLGGAGERGLEI+GKF+KFTAIGVYLED A
Sbjct: 1   MSTSLSVTELQVENFTFPPTVKPPGSTKTLFLGGAGERGLEIQGKFIKFTAIGVYLEDSA 60

Query: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120
           V  L  KWKGK+A ELTESVEFFRDVVTG FEKF++VTMILPLTG QYSEKV+ENC+AIW
Sbjct: 61  VNCLGVKWKGKSAVELTESVEFFRDVVTGDFEKFIRVTMILPLTGQQYSEKVSENCVAIW 120

Query: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQS-PGSLTISFSKDGSIPKDGVAVI 179
           K  GIYTDAEAKAIEKF EVFKDE FPPGSSILFT S  GSLTI FSKD S+P+ G  VI
Sbjct: 121 KSLGIYTDAEAKAIEKFIEVFKDENFPPGSSILFTISGQGSLTIGFSKDSSVPEGGKVVI 180

Query: 180 ESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           E+ LL+ +VLES+IGKNGVSPAAK+SLA R+S L N
Sbjct: 181 ENKLLANSVLESVIGKNGVSPAAKESLASRLSPLFN 216

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Gossypium hirsutum (taxid: 3635)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|A5ANT9|CFI2_VITVI Chalcone--flavonone isomerase 2 OS=Vitis vinifera GN=CHI2 PE=3 SV=1

 Score =  325 bits (832), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 164/215 (76%), Positives = 183/215 (85%), Gaps = 1/215 (0%)

Query: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60
           M+P PSVT +QVENV F PSV+PPGST   FLGGAG RGLEI+GKFVKFTAIGVYLE  A
Sbjct: 1   MSPVPSVTAVQVENVLFPPSVKPPGSTNDLFLGGAGVRGLEIQGKFVKFTAIGVYLESSA 60

Query: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120
           VP LA KWKGKT EEL +SV+FFRDVVTGPFEKF KVT ILPLTG QYS+KV+ENC+A W
Sbjct: 61  VPTLAVKWKGKTVEELADSVDFFRDVVTGPFEKFTKVTTILPLTGRQYSDKVSENCVAFW 120

Query: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVI 179
           K  GIYTDAEAKAIEKF EV KDE FPPG+SILFT SP G+LT+SFSKDGS+P+ G AVI
Sbjct: 121 KSVGIYTDAEAKAIEKFNEVLKDETFPPGNSILFTHSPLGALTMSFSKDGSLPEVGNAVI 180

Query: 180 ESNLLSEAVLESMIGKNGVSPAAKKSLAERISALL 214
           E+ LL+EAVLES+IGK+GVSP AKKSLA R+S L 
Sbjct: 181 ENKLLTEAVLESIIGKHGVSPEAKKSLAARLSELF 215

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Vitis vinifera (taxid: 29760)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|P51117|CFI1_VITVI Chalcone--flavonone isomerase 1 OS=Vitis vinifera GN=CHI1 PE=2 SV=1

 Score =  323 bits (827), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 163/215 (75%), Positives = 183/215 (85%), Gaps = 1/215 (0%)

Query: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60
           M+  PSVT +QVENV F PSV+PPGST   FLGGAG RGLEI+GKFVKFTAIGVYLE+ A
Sbjct: 1   MSQVPSVTAVQVENVLFPPSVKPPGSTNDLFLGGAGVRGLEIQGKFVKFTAIGVYLENSA 60

Query: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120
           VP LA KWKGKT EEL +SV+FFRDVVTGPFEKF KVT ILPLTG QYS+KV+ENC+A W
Sbjct: 61  VPTLAVKWKGKTVEELADSVDFFRDVVTGPFEKFTKVTTILPLTGRQYSDKVSENCVAFW 120

Query: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVI 179
           K  GIYTDAEAKAIEKF EV KDE FPPG+SILFT SP G+LT+SFSKDGS+P+ G AVI
Sbjct: 121 KSVGIYTDAEAKAIEKFNEVLKDETFPPGNSILFTHSPLGALTMSFSKDGSLPEVGNAVI 180

Query: 180 ESNLLSEAVLESMIGKNGVSPAAKKSLAERISALL 214
           E+ LL+EAVLES+IGK+GVSP AKKSLA R+S L 
Sbjct: 181 ENKLLTEAVLESIIGKHGVSPEAKKSLAARLSELF 215

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Vitis vinifera (taxid: 29760)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|O65333|CFI_ELAUM Chalcone--flavonone isomerase OS=Elaeagnus umbellata GN=CHI PE=2 SV=1

 Score =  321 bits (822), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/214 (73%), Positives = 186/214 (86%), Gaps = 1/214 (0%)

Query: 6   SVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLA 65
           SVTE+QVE+V F P V+PPGS+K+ FLGGAG RG+EI+GKF+KFTAIGVYLED+AVP LA
Sbjct: 7   SVTEVQVESVIFPPEVKPPGSSKTLFLGGAGVRGIEIQGKFIKFTAIGVYLEDNAVPSLA 66

Query: 66  GKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGI 125
            KWKGK+A+ELTESVEFFRD+VTGP EKF +VT ILPLTG QYSEKV+ENC+A WK  GI
Sbjct: 67  VKWKGKSAQELTESVEFFRDIVTGPMEKFTRVTTILPLTGQQYSEKVSENCVAAWKSLGI 126

Query: 126 YTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLL 184
           Y+DAEAKAIEKF E+FKD+ FPP +S LFTQSP GSLT+SFSKDGSIP+ G AV+E+ LL
Sbjct: 127 YSDAEAKAIEKFIEIFKDQTFPPAASNLFTQSPLGSLTMSFSKDGSIPEVGNAVLENKLL 186

Query: 185 SEAVLESMIGKNGVSPAAKKSLAERISALLNVTS 218
           SEAVLES+IGK+GVSP AK++LA R+  LLN  S
Sbjct: 187 SEAVLESIIGKHGVSPEAKQNLATRLVQLLNENS 220

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Elaeagnus umbellata (taxid: 43233)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q4AE11|CFI1_FRAAN Chalcone--flavonone isomerase 1 OS=Fragaria ananassa GN=CHI1 PE=2 SV=1

 Score =  320 bits (820), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 161/210 (76%), Positives = 183/210 (87%), Gaps = 1/210 (0%)

Query: 6   SVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLA 65
           SVT +Q+  ++F PSV+PPGS  + FLGGAG RG+EI+G FVKFTAIGVYLED AVP LA
Sbjct: 4   SVTGIQIGGMSFPPSVKPPGSGNTFFLGGAGVRGMEIQGNFVKFTAIGVYLEDKAVPALA 63

Query: 66  GKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGI 125
            KWKGKTAEELTESVEFFR++VTGPFEKF +VTMILPLTG QYSEKV+ENC+AIWK FGI
Sbjct: 64  VKWKGKTAEELTESVEFFREIVTGPFEKFTQVTMILPLTGQQYSEKVSENCVAIWKKFGI 123

Query: 126 YTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLL 184
           YTDAEAKAIEKF EVFKD+ FPPG+SILFTQSP GSLTI FSKDG IP+ G AVIE+ LL
Sbjct: 124 YTDAEAKAIEKFIEVFKDQTFPPGASILFTQSPDGSLTIGFSKDGCIPEVGNAVIENKLL 183

Query: 185 SEAVLESMIGKNGVSPAAKKSLAERISALL 214
           SE+VLES+IGK GVSP A+KS+A R+S LL
Sbjct: 184 SESVLESIIGKPGVSPEARKSVATRLSELL 213

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Fragaria ananassa (taxid: 3747)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q4AE12|CFI2_FRAAN Chalcone--flavonone isomerase 2 OS=Fragaria ananassa GN=CHI2 PE=2 SV=1

 Score =  316 bits (810), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 158/210 (75%), Positives = 181/210 (86%), Gaps = 1/210 (0%)

Query: 6   SVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLA 65
           SVT +Q+   +F P+V+PPGS  + FLGGAG RG+EI+G FVKFTAIGVYLED AVP L+
Sbjct: 4   SVTGIQIGGTSFPPAVKPPGSGNTLFLGGAGVRGMEIQGNFVKFTAIGVYLEDKAVPALS 63

Query: 66  GKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGI 125
            KWKGKTAEELTESVEFFR++VTGPFEKF +VTMILPLTG QYSEKV+ENC+AIWK FGI
Sbjct: 64  VKWKGKTAEELTESVEFFREIVTGPFEKFTQVTMILPLTGQQYSEKVSENCVAIWKKFGI 123

Query: 126 YTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLL 184
           YTDAEAKAIEKF EVFKD+ FPPG+SILFTQSP GSL I  SKDGSIP+ G AVIE+ LL
Sbjct: 124 YTDAEAKAIEKFIEVFKDQTFPPGASILFTQSPNGSLMIGISKDGSIPEVGNAVIENKLL 183

Query: 185 SEAVLESMIGKNGVSPAAKKSLAERISALL 214
           SE+VLES+IGK GVSP A+KS+A R+S LL
Sbjct: 184 SESVLESIIGKQGVSPEARKSVATRLSELL 213

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Fragaria ananassa (taxid: 3747)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q8H0G1|CFI2_LOTJA Chalcone--flavonone isomerase 2 OS=Lotus japonicus GN=CHI2 PE=2 SV=1

 Score =  311 bits (797), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 156/213 (73%), Positives = 177/213 (83%), Gaps = 2/213 (0%)

Query: 5   PSVTELQVENVTFTPS-VQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPL 63
           PSVT LQVENV F P+ ++PP S  + FLGGAGERGL I+ KFVKFTAIG+YL+D AVP 
Sbjct: 4   PSVTALQVENVAFPPTLIKPPASANTLFLGGAGERGLHIQDKFVKFTAIGIYLQDTAVPS 63

Query: 64  LAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFF 123
           LA KWKGK  +ELTESV+FFRD+VTGPFEKFM+VTMILPLTG QYSEKV+ENC+AIWK  
Sbjct: 64  LAVKWKGKPVDELTESVQFFRDIVTGPFEKFMQVTMILPLTGQQYSEKVSENCVAIWKHL 123

Query: 124 GIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESN 182
           GIYTD E KAI+KF  VFKD+ FPPGSSILFT  P GSL ISFSKDGSIP+   AVI++ 
Sbjct: 124 GIYTDEEGKAIDKFVSVFKDQTFPPGSSILFTVLPKGSLAISFSKDGSIPEVESAVIDNK 183

Query: 183 LLSEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           LLSEAVLESMIG +GVSPAAK+SLA R+S L  
Sbjct: 184 LLSEAVLESMIGAHGVSPAAKQSLASRLSELFK 216

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Lotus japonicus (taxid: 34305)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
75217175	222	RecName: Full=Chalcone--flavonone isomer	1.0	1.0	0.995	1e-122
284518922	222	chalcone isomerase [Citrus maxima]	1.0	1.0	0.959	1e-118
346540241	223	CHI [Canarium album]	0.968	0.964	0.828	3e-96
346577496	246	chalcone isomerase [Dimocarpus longan]	0.968	0.873	0.824	1e-95
254305423	174	chalcone isomerase [Citrus maxima]	0.783	1.0	0.954	6e-90
310751874	233	chalcone isomerase [Pyrus pyrifolia]	0.968	0.922	0.759	1e-88
325551315	230	chalcone isomerase [Camellia nitidissima	0.968	0.934	0.752	3e-88
158513327	219	RecName: Full=Chalcone--flavonone isomer	0.968	0.981	0.759	6e-88
122233481	230	RecName: Full=Chalcone--flavonone isomer	0.968	0.934	0.743	1e-87
158512763	227	RecName: Full=Chalcone--flavonone isomer	0.968	0.947	0.773	3e-87

>gi|75217175|sp|Q9ZWR1.1|CFI_CITSI RecName: Full=Chalcone--flavonone isomerase; Short=Chalcone isomerase gi|4126399|dbj|BAA36552.1| chalcone isomerase [Citrus sinensis] gi|228480553|gb|ACQ41889.1| chalcone isomerase [Citrus unshiu]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/222 (99%), Positives = 222/222 (100%)

Query: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60
           MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA
Sbjct: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60

Query: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120
           VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW
Sbjct: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120

Query: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIE 180
           KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIE
Sbjct: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIE 180

Query: 181 SNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDKMK 222
           SNLLSEAVLESMIGKNGVSPAAKKSLAER+SALLNVTSDKMK
Sbjct: 181 SNLLSEAVLESMIGKNGVSPAAKKSLAERLSALLNVTSDKMK 222

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284518922|gb|ADB92596.1| chalcone isomerase [Citrus maxima]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/222 (95%), Positives = 219/222 (98%)

Query: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60
           MNPSPSVTELQVENVTFTPS+QPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLE++A
Sbjct: 1   MNPSPSVTELQVENVTFTPSLQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEENA 60

Query: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120
           VPLLAGKWKGKTA ELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENC+AIW
Sbjct: 61  VPLLAGKWKGKTAGELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCMAIW 120

Query: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIE 180
           KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQS GSLTISFSKDGSIPKDGVAVIE
Sbjct: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSSGSLTISFSKDGSIPKDGVAVIE 180

Query: 181 SNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDKMK 222
           +NLLSEAVLESMIGKNGVSPAAKKSLAER+SALLNV SDKMK
Sbjct: 181 NNLLSEAVLESMIGKNGVSPAAKKSLAERLSALLNVASDKMK 222

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346540241|gb|AEO36936.1| CHI [Canarium album]

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 179/216 (82%), Positives = 195/216 (90%), Gaps = 1/216 (0%)

Query: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60
           M  SPSVTE+QVENVTFTP V+PPGSTK+ FLGGAGERGLEI+GKFVKFTAIGVYLED+A
Sbjct: 1   MQSSPSVTEIQVENVTFTPFVKPPGSTKTLFLGGAGERGLEIQGKFVKFTAIGVYLEDNA 60

Query: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120
           V  LAGKWK K+ EELT SVEFFRD+VTGPFEKFM+VTMILPLTG QYSEKV+ENC+AIW
Sbjct: 61  VLSLAGKWKAKSVEELTASVEFFRDIVTGPFEKFMQVTMILPLTGQQYSEKVSENCVAIW 120

Query: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVI 179
           K  GIYTDAEAKAIEKF EVFKDE FPPG+SILFTQSP GSLTISFSKDG IPK G AVI
Sbjct: 121 KSIGIYTDAEAKAIEKFLEVFKDENFPPGTSILFTQSPNGSLTISFSKDGCIPKAGNAVI 180

Query: 180 ESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           E+ LLSEA+LESMIGK+GVSPAAKKSLA R+S LL+
Sbjct: 181 ENKLLSEAILESMIGKHGVSPAAKKSLAARLSELLH 216

Source: Canarium album

Species: Canarium album

Genus: Canarium

Family: Burseraceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346577496|gb|AEO36980.1| chalcone isomerase [Dimocarpus longan]

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 178/216 (82%), Positives = 194/216 (89%), Gaps = 1/216 (0%)

Query: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60
           M  SPSVTE+QVENVTFTP V+PPGSTK+ FLGGAGERGLEI+GKF+KFTAIGVYLED A
Sbjct: 1   MQSSPSVTEIQVENVTFTPFVKPPGSTKTLFLGGAGERGLEIQGKFIKFTAIGVYLEDVA 60

Query: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120
           V  LA KWKGKTAEELTESVEFFRD+VTGPFEKFMKVTMILPLTG QYSEKV ENCIA W
Sbjct: 61  VSWLAVKWKGKTAEELTESVEFFRDIVTGPFEKFMKVTMILPLTGQQYSEKVTENCIAFW 120

Query: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVI 179
           K  GIYTDAEA+A EKFT++FKDE FPPG+SILFTQSP GSLTISFSKDG+IP+ G AVI
Sbjct: 121 KSIGIYTDAEARATEKFTKIFKDETFPPGTSILFTQSPHGSLTISFSKDGTIPEVGNAVI 180

Query: 180 ESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           E+ LLSEA+LESMIGK+GVSP AKKSLA R+S LLN
Sbjct: 181 ENKLLSEAILESMIGKHGVSPPAKKSLAARLSILLN 216

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|254305423|gb|ACT66123.1| chalcone isomerase [Citrus maxima]

 Score =  335 bits (860), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 166/174 (95%), Positives = 172/174 (98%)

Query: 49  FTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQY 108
           FTAIGVYLE++AVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQY
Sbjct: 1   FTAIGVYLEENAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQY 60

Query: 109 SEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKD 168
           SEKVAENC+AIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQS GSLTISFSKD
Sbjct: 61  SEKVAENCMAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSSGSLTISFSKD 120

Query: 169 GSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDKMK 222
           GS+PKDGVAVIE+NLLSEAVLESMIGKNGVSPAAKKSLAER+SALLNV SDKMK
Sbjct: 121 GSMPKDGVAVIENNLLSEAVLESMIGKNGVSPAAKKSLAERLSALLNVASDKMK 174

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310751874|gb|ADP09377.1| chalcone isomerase [Pyrus pyrifolia]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/216 (75%), Positives = 187/216 (86%), Gaps = 1/216 (0%)

Query: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60
           M P+PS+  LQ+E  TF PSV+PPGS+ + FLGGAG RGLEI G FVKFTAIGVYLED+A
Sbjct: 1   MAPTPSLAGLQIETTTFPPSVKPPGSSNTLFLGGAGVRGLEIRGNFVKFTAIGVYLEDNA 60

Query: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120
           VP LA KWKGKTAEELTESVEFFRD+VTGPFEKF++VT ILPLTG QYSEKV+ENC+A W
Sbjct: 61  VPQLAVKWKGKTAEELTESVEFFRDIVTGPFEKFIQVTTILPLTGQQYSEKVSENCVAFW 120

Query: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVI 179
           K  GIYTDAE KAIEKF EVFKD+ FPPG+SILFTQSP GSLTISFS+D S+P+   AVI
Sbjct: 121 KSVGIYTDAEGKAIEKFLEVFKDQNFPPGASILFTQSPKGSLTISFSRDASVPEAANAVI 180

Query: 180 ESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           E+ LLSEAVLES++GK+GVSPAAK+SLA R+S LLN
Sbjct: 181 ENKLLSEAVLESIVGKHGVSPAAKQSLAARLSELLN 216

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325551315|gb|ADZ28513.1| chalcone isomerase [Camellia nitidissima]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 164/218 (75%), Positives = 189/218 (86%), Gaps = 3/218 (1%)

Query: 1   MNPS--PSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLED 58
           M+PS  PSVT++Q+E+  F P+V+PPG++K  FLGGAGERGLEI+GKF+KFTAIGVYLED
Sbjct: 1   MSPSQSPSVTQVQIESHVFPPTVKPPGTSKPFFLGGAGERGLEIQGKFIKFTAIGVYLED 60

Query: 59  DAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIA 118
            A+P LA KWKGKTAEELT+SV+FFRD+V+GPFEKF +VTMILPLTG QYSEKV ENC+A
Sbjct: 61  SAIPSLAVKWKGKTAEELTDSVDFFRDIVSGPFEKFTQVTMILPLTGQQYSEKVTENCVA 120

Query: 119 IWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVA 177
            WK  G YTDAEAKAIEKF EVFKDE FPPG SILFTQSP GSLTI+FSKDGS+P+ G  
Sbjct: 121 YWKAVGTYTDAEAKAIEKFIEVFKDETFPPGGSILFTQSPLGSLTIAFSKDGSLPETGTV 180

Query: 178 VIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           VIE+  LSEAVLES+IGK+GVSPAAKKSLA R+S LL 
Sbjct: 181 VIENKQLSEAVLESIIGKHGVSPAAKKSLAARMSELLK 218

Source: Camellia nitidissima

Species: Camellia nitidissima

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|158513327|sp|A5HBK6.1|CFI_PYRCO RecName: Full=Chalcone--flavonone isomerase; Short=Chalcone isomerase gi|146160815|gb|ABQ08639.1| chalcone isomerase [Pyrus communis]

 Score =  329 bits (843), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 164/216 (75%), Positives = 186/216 (86%), Gaps = 1/216 (0%)

Query: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60
           M P PS+  LQVE   F PSV+PPGS+ + FLGGAG RGLEI+G FVKFTAIGVYLED+A
Sbjct: 1   MAPPPSLAGLQVEATAFPPSVKPPGSSNTLFLGGAGVRGLEIQGNFVKFTAIGVYLEDNA 60

Query: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120
           VPLLA KWKGKTAEEL+ESVEFFRD+VTGPFEKF++VT ILPLTG QYSEKV+ENC+A W
Sbjct: 61  VPLLAVKWKGKTAEELSESVEFFRDIVTGPFEKFIQVTTILPLTGQQYSEKVSENCVAFW 120

Query: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVI 179
           K  GIYTDAE KAIEKF EVFKD+ FPPG+SILFTQSP GSLTI FSKD S+P+   AVI
Sbjct: 121 KSVGIYTDAEGKAIEKFIEVFKDQNFPPGASILFTQSPKGSLTICFSKDASVPEAANAVI 180

Query: 180 ESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           E+ LLSEAVLES++GK+GVSPAAK+SLA R+S LLN
Sbjct: 181 ENKLLSEAVLESILGKHGVSPAAKRSLAARLSELLN 216

Source: Pyrus communis

Species: Pyrus communis

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122233481|sp|Q45QI7.2|CFI_CAMSI RecName: Full=Chalcone--flavonone isomerase; Short=Chalcone isomerase gi|76152009|gb|AAZ17563.2| chalcone isomerase [Camellia sinensis]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 162/218 (74%), Positives = 188/218 (86%), Gaps = 3/218 (1%)

Query: 1   MNPS--PSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLED 58
           M+PS  PSV ++Q+E+  F P+V+PPG++K  FLGGAGERGLEI+GKF+KFTAIGVYLED
Sbjct: 1   MSPSQSPSVAQVQIESHVFPPTVKPPGTSKPFFLGGAGERGLEIQGKFIKFTAIGVYLED 60

Query: 59  DAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIA 118
            A+P LA KWKGKTAEELT+SV+FFRD+V+GPFEKF +VTMILPLTG QYSEKV ENC+A
Sbjct: 61  SAIPSLAVKWKGKTAEELTDSVDFFRDIVSGPFEKFTQVTMILPLTGQQYSEKVTENCVA 120

Query: 119 IWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVA 177
            WK  G YTDAEAKAIEKF EVFKDE FPPG SILFTQSP GSLTI+FSKDGS+P+ G  
Sbjct: 121 YWKAVGTYTDAEAKAIEKFIEVFKDETFPPGGSILFTQSPLGSLTIAFSKDGSLPETGTV 180

Query: 178 VIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           V+E+  LSEAVLES+IGK+GVSPAAKKSLA R+S LL 
Sbjct: 181 VMENKQLSEAVLESIIGKHGVSPAAKKSLAARMSELLK 218

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|158512763|sp|A2IBF8.1|CFI_GOSHI RecName: Full=Chalcone--flavonone isomerase; Short=Chalcone isomerase gi|121755801|gb|ABM64798.1| chalcone isomerase [Gossypium hirsutum]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 167/216 (77%), Positives = 186/216 (86%), Gaps = 1/216 (0%)

Query: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60
           M+ S SVTELQVEN TF P+V+PPGSTK+ FLGGAGERGLEI+GKF+KFTAIGVYLED A
Sbjct: 1   MSTSLSVTELQVENFTFPPTVKPPGSTKTLFLGGAGERGLEIQGKFIKFTAIGVYLEDSA 60

Query: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120
           V  L  KWKGK+A ELTESVEFFRDVVTG FEKF++VTMILPLTG QYSEKV+ENC+AIW
Sbjct: 61  VNCLGVKWKGKSAVELTESVEFFRDVVTGDFEKFIRVTMILPLTGQQYSEKVSENCVAIW 120

Query: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQS-PGSLTISFSKDGSIPKDGVAVI 179
           K  GIYTDAEAKAIEKF EVFKDE FPPGSSILFT S  GSLTI FSKD S+P+ G  VI
Sbjct: 121 KSLGIYTDAEAKAIEKFIEVFKDENFPPGSSILFTISGQGSLTIGFSKDSSVPEGGKVVI 180

Query: 180 ESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           E+ LL+ +VLES+IGKNGVSPAAK+SLA R+S L N
Sbjct: 181 ENKLLANSVLESVIGKNGVSPAAKESLASRLSPLFN 216

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2097228	246	TT5 "TRANSPARENT TESTA 5" [Ara	0.986	0.890	0.677	1.1e-76
TAIR|locus:2153539	209	CHIL "chalcone isomerase like"	0.909	0.966	0.322	7.5e-18
TAIR|locus:2024877	287	FAP3 "fatty-acid-binding prote	0.873	0.675	0.264	4.6e-12
TAIR|locus:2077229	279	FAP1 "fatty-acid-binding prote	0.824	0.655	0.239	3e-06

TAIR|locus:2097228 TT5 "TRANSPARENT TESTA 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 149/220 (67%), Positives = 181/220 (82%)

Query:     2 NPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAV 61
             +P P+VT+L V++VTF PSV+ P S+   FLGGAG RGL+I+GKFV FT IGVYLE +AV
Sbjct:    11 SPFPAVTKLHVDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGKFVIFTVIGVYLEGNAV 70

Query:    62 PLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWK 121
             P L+ KWKGKT EELTES+ FFR++VTG FEKF+KVTM LPLTG QYSEKV ENC+AIWK
Sbjct:    71 PSLSVKWKGKTTEELTESIPFFREIVTGAFEKFIKVTMKLPLTGQQYSEKVTENCVAIWK 130

Query:   122 FFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIE 180
               G+YTD EAKA+EKF E+FK+E FPPGSSILF  SP GSLT++FSKD SIP+ G+AVIE
Sbjct:   131 QLGLYTDCEAKAVEKFLEIFKEETFPPGSSILFALSPTGSLTVAFSKDDSIPETGIAVIE 190

Query:   181 SNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDK 220
             + LL+EAVLES+IGKNGVSP  + S+AER+S L+    D+
Sbjct:   191 NKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLMMKNKDE 230

GO:0009507 "chloroplast" evidence=ISM

GO:0009813 "flavonoid biosynthetic process" evidence=IEA;RCA;IMP

GO:0016872 "intramolecular lyase activity" evidence=IEA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=IEA

GO:0045430 "chalcone isomerase activity" evidence=IEA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042406 "extrinsic to endoplasmic reticulum membrane" evidence=IDA

GO:0010224 "response to UV-B" evidence=RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009411 "response to UV" evidence=IMP

TAIR|locus:2153539 CHIL "chalcone isomerase like" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 68/211 (32%), Positives = 102/211 (48%)

Query:     8 TEL-QVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAG 66
             TE+  V  V F P +    ++K   L G G   +EI    VKFTAIGVYL+   V     
Sbjct:     3 TEMVMVHEVPFPPQII---TSKPLSLLGQGITDIEIHFLQVKFTAIGVYLDPSDVKTHLD 59

Query:    67 KWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAI-WKFFGI 125
              WKGKT +EL    +FF  + +   EK ++V +I  + GAQY  ++ EN +         
Sbjct:    60 NWKGKTGKELAGDDDFFDALASAEMEKVIRVVVIKEIKGAQYGVQL-ENTVRDRLAEEDK 118

Query:   126 YTDAEAKAIEKFTEVFKDEIFPPGSSIL--FTQSPGSLTISFSKDGSIPKDGVAVIESNL 183
             Y + E   +EK    F+ + F   S I   F+   G   I F  +G   ++ + V  +N+
Sbjct:   119 YEEEEETELEKVVGFFQSKYFKANSVITYHFSAKDGICEIGFETEGK-EEEKLKVENANV 177

Query:   184 LSEAVLESMIGKNGVSPAAKKSLAERISALL 214
             +       + G  GVSP+   S+A+ ISA+L
Sbjct:   178 VGMMQRWYLSGSRGVSPSTIVSIADSISAVL 208

GO:0009507 "chloroplast" evidence=ISM

GO:0009813 "flavonoid biosynthetic process" evidence=IEA;RCA

GO:0016872 "intramolecular lyase activity" evidence=IEA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=IEA

GO:0045430 "chalcone isomerase activity" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2024877 FAP3 "fatty-acid-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 54/204 (26%), Positives = 96/204 (47%)

Query:    14 NVTFTPSVQPPGSTKSHFLGGAG--ERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGK 71
             +V F  SV  PG +    L G G  E+   I G  VK  A G Y+ +  +  L+  W G+
Sbjct:    90 SVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIG--VKVYAAGYYVNESILSGLSA-WTGR 146

Query:    72 TAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEA 131
             +A+E+      F  +     EK +++ ++  + G  + + + E   AI       +  + 
Sbjct:   147 SADEIQRDSSLFVSIFQAQAEKSLQIVLVRDVDGKTFWDALDE---AISPRIKSPSSEDT 203

Query:   132 KAIEKFTEVFKDEIFPPGSSILFTQ-SPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLE 190
              A+  F  +F++     GS IL T  +  ++ +S S  G +P +  A IES  ++ A+ +
Sbjct:   204 TALSTFRGIFQNRPLNKGSVILLTWINTSNMLVSVSS-GGLPTNVDATIESGNVTSALFD 262

Query:   191 SMIGKNGVSPAAKKSLAERISALL 214
                G + VSP  K S+A +++  L
Sbjct:   263 VFFGDSPVSPTLKSSVANQLAMTL 286

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005504 "fatty acid binding" evidence=IPI

GO:0006631 "fatty acid metabolic process" evidence=IMP

TAIR|locus:2077229 FAP1 "fatty-acid-binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 47/196 (23%), Positives = 89/196 (45%)

Query:    23 PPGSTKSHFLGGAGERGLEIEG-KFVKFTAIGVYLE-DDAVPLLAGKWKGKTAEELTESV 80
             P     S  L G G R   + G K +   A GVY + DD   L+  K+    A E+  + 
Sbjct:    88 PASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNK 147

Query:    81 EFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIA--IWKFFGIYTDAEAKAIEKFT 138
              F  D++    +  +++ ++      +      +  +   + KF G   D   + ++ FT
Sbjct:   148 SFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDND---ELLQSFT 204

Query:   139 EVFKDEI-FPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNG 197
              +FKDE   P  S+I  T+ PG + +S + +G+     V  ++S+LL  ++L+  IG+  
Sbjct:   205 SLFKDEYKIPRNSTIDLTKDPGHV-LSVAIEGN----HVGSVKSHLLCRSILDLYIGEEP 259

Query:   198 VSPAAKKSLAERISAL 213
                 A++   +  ++L
Sbjct:   260 FDKNAREDFLDNAASL 275


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.132   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      222       222   0.00096  112 3  11 23  0.44    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  150 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.18u 0.19s 20.37t   Elapsed:  00:00:01
  Total cpu time:  20.18u 0.19s 20.37t   Elapsed:  00:00:01
  Start:  Fri May 10 21:20:39 2013   End:  Fri May 10 21:20:40 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005504 "fatty acid binding" evidence=IPI

GO:0006631 "fatty acid metabolic process" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6QHK0	CFI_ALLCE	5, ., 5, ., 1, ., 6	0.6540	0.9459	0.9292	N/A	no
Q3Y4F4	CFI_CANGE	5, ., 5, ., 1, ., 6	0.6208	0.9414	0.9247	N/A	no
Q8H0F6	CFI3_LOTJA	5, ., 5, ., 1, ., 6	0.5428	0.9414	0.9288	N/A	no
Q9M5B3	CFI3_PETHY	5, ., 5, ., 1, ., 6	0.7023	0.9639	0.8879	N/A	no
P11651	CFI2_PETHY	5, ., 5, ., 1, ., 6	0.6790	0.9639	0.9727	N/A	no
P11650	CFI1_PETHY	5, ., 5, ., 1, ., 6	0.7116	0.9639	0.8879	N/A	no
A7ISP6	CFI3_SOYBN	5, ., 5, ., 1, ., 6	0.6966	0.9459	0.9292	yes	no
Q8S3X0	CFI_HORVU	5, ., 5, ., 1, ., 6	0.6084	0.9459	0.9090	N/A	no
P28012	CFI1_MEDSA	5, ., 5, ., 1, ., 6	0.5592	0.9459	0.9459	N/A	no
A2IBF8	CFI_GOSHI	5, ., 5, ., 1, ., 6	0.7731	0.9684	0.9471	N/A	no
Q84T92	CFI_ORYSJ	5, ., 5, ., 1, ., 6	0.6175	0.9594	0.9141	yes	no
Q08704	CFI_MAIZE	5, ., 5, ., 1, ., 6	0.6815	0.9009	0.8658	N/A	no
Q9LKC3	CFI_ARALP	5, ., 5, ., 1, ., 6	0.7014	0.9459	0.8606	N/A	no
A5ANT9	CFI2_VITVI	5, ., 5, ., 1, ., 6	0.7627	0.9639	0.9145	yes	no
A4F1Q8	CFI_CLITE	5, ., 5, ., 1, ., 6	0.7155	0.9594	0.9726	N/A	no
P41088	CFI1_ARATH	5, ., 5, ., 1, ., 6	0.6772	0.9864	0.8902	yes	no
O22651	CFI_RAPSA	5, ., 5, ., 1, ., 6	0.6728	0.9594	0.8623	N/A	no
Q9ZWR1	CFI_CITSI	5, ., 5, ., 1, ., 6	0.9954	1.0	1.0	no	no
Q45QI7	CFI_CAMSI	5, ., 5, ., 1, ., 6	0.7431	0.9684	0.9347	N/A	no
P51117	CFI1_VITVI	5, ., 5, ., 1, ., 6	0.7581	0.9639	0.9145	yes	no
Q8S911	CFI_IPOBA	5, ., 5, ., 1, ., 6	0.6697	0.9639	0.8806	N/A	no
Q8H0G1	CFI2_LOTJA	5, ., 5, ., 1, ., 6	0.7323	0.9504	0.9547	N/A	no
Q8H0G2	CFI1_LOTJA	5, ., 5, ., 1, ., 6	0.5592	0.9459	0.9292	N/A	no
Q42663	CFI_CALCH	5, ., 5, ., 1, ., 6	0.6901	0.9549	0.8945	N/A	no
P14298	CFI_PHAVU	5, ., 5, ., 1, ., 6	0.5555	0.9684	0.9728	N/A	no
A5HBK6	CFI_PYRCO	5, ., 5, ., 1, ., 6	0.7592	0.9684	0.9817	N/A	no
Q53B74	CFI2A_SOYBN	5, ., 5, ., 1, ., 6	0.6919	0.9459	0.9292	yes	no
P28013	CFI2_MEDSA	5, ., 5, ., 1, ., 6	0.5873	0.8468	0.9543	N/A	no
Q565D8	CFI_GENTR	5, ., 5, ., 1, ., 6	0.6945	0.9144	0.9185	N/A	no
Q2PF16	CFI_VERHY	5, ., 5, ., 1, ., 6	0.7122	0.9504	0.9504	N/A	no
A2XNF0	CFI_ORYSI	5, ., 5, ., 1, ., 6	0.6175	0.9594	0.9141	N/A	no
P41089	CFI_PEA	5, ., 5, ., 1, ., 6	0.5075	0.8828	0.8789	N/A	no
Q43754	CFI_DIACA	5, ., 5, ., 1, ., 6	0.6952	0.9414	0.9457	N/A	no
Q8LKP9	CFI_SAUME	5, ., 5, ., 1, ., 6	0.6561	0.9909	0.9482	N/A	no
Q33DL3	CFI_TOBAC	5, ., 5, ., 1, ., 6	0.6971	0.9189	0.8360	N/A	no
Q43056	CFI_PUEML	5, ., 5, ., 1, ., 6	0.5545	0.9459	0.9375	N/A	no
O22604	CFI_IPOPU	5, ., 5, ., 1, ., 6	0.6604	0.9639	0.8879	N/A	no
A1E261	CFI2_CHRMO	5, ., 5, ., 1, ., 6	0.6851	0.9684	0.9148	N/A	no
A1E260	CFI1_CHRMO	5, ., 5, ., 1, ., 6	0.6805	0.9684	0.9148	N/A	no
Q4AE11	CFI1_FRAAN	5, ., 5, ., 1, ., 6	0.7666	0.9414	0.8818	N/A	no
Q4AE12	CFI2_FRAAN	5, ., 5, ., 1, ., 6	0.7523	0.9414	0.8818	N/A	no
Q6BEH3	CFI_EUSER	5, ., 5, ., 1, ., 6	0.6604	0.9684	0.9907	N/A	no
O65333	CFI_ELAUM	5, ., 5, ., 1, ., 6	0.7383	0.9594	0.8320	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.5.1	0.998
4th Layer	5.5.1.6	0.993

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	CHI1	RecName- Full=Chalcone--flavonone isomerase 2; Short=Chalcone isomerase 2; EC=5.5.1.6;; Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin (By similarity) (234 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	VvF3'h3	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (509 aa)						•	•		0.915
	CHS2	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence;; The primary product [...] (393 aa)						•	•		0.912
	F3H	RecName- Full=Naringenin,2-oxoglutarate 3-dioxygenase; EC=1.14.11.9; AltName- Full=Flavonone-3- [...] (363 aa)						•			0.899
	GSVIVG00022302001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (155 aa)						•			0.899
	GSVIVG00022301001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (217 aa)						•			0.899
	GSVIVG00022298001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (508 aa)						•			0.899
	GSVIVG00022293001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (508 aa)						•			0.899
	VvF3'h1	SubName- Full=Putative uncharacterized protein (Chromosome chr17 scaffold_12, whole genome shot [...] (509 aa)						•			0.899
	GSVIVG00014798001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (302 aa)						•			0.899
	GSVIVG00014584001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (323 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
PLN02559	230	PLN02559, PLN02559, chalcone--flavonone isomerase	1e-124
pfam02431	200	pfam02431, Chalcone, Chalcone-flavanone isomerase	3e-91
PLN02804	206	PLN02804, PLN02804, chalcone isomerase	2e-29
PLN02311	271	PLN02311, PLN02311, chalcone isomerase	8e-17
PLN03174	278	PLN03174, PLN03174, Chalcone-flavanone isomerase-r	5e-06

>gnl|CDD|178173 PLN02559, PLN02559, chalcone--flavonone isomerase

 Score =  350 bits (900), Expect = e-124
 Identities = 161/211 (76%), Positives = 181/211 (85%), Gaps = 1/211 (0%)

Query: 5   PSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLL 64
           P+VTE+QVE VTF PSV+PPGS+   FLGGAG RGLEI+GKF+KFTAIGVYLE +AVP L
Sbjct: 2   PAVTEVQVEGVTFPPSVKPPGSSNPLFLGGAGVRGLEIQGKFIKFTAIGVYLEGNAVPSL 61

Query: 65  AGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFG 124
           A KWKGKTAEEL +SV FFRDVVTG FEKF +VTMILPLTG QYSEKV ENC+AIWK  G
Sbjct: 62  AKKWKGKTAEELADSVAFFRDVVTGDFEKFTRVTMILPLTGEQYSEKVTENCVAIWKSLG 121

Query: 125 IYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNL 183
           IYTDAEAKA+EKF E FK+E FPPGSSILFT SP GSLT++FSKD S+P+ G AVIE+ L
Sbjct: 122 IYTDAEAKAVEKFKEAFKEETFPPGSSILFTHSPTGSLTVAFSKDSSVPEVGNAVIENKL 181

Query: 184 LSEAVLESMIGKNGVSPAAKKSLAERISALL 214
           L EAVLES+IGK+GVSPAAK SLA R+S LL
Sbjct: 182 LCEAVLESIIGKHGVSPAAKLSLAARLSELL 212

Length = 230

>gnl|CDD|217029 pfam02431, Chalcone, Chalcone-flavanone isomerase

 Score =  266 bits (681), Expect = 3e-91
 Identities = 108/200 (54%), Positives = 137/200 (68%), Gaps = 3/200 (1%)

Query: 17  FTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEEL 76
           F P++ PPGS KS FL GAG RG+   GKF+K  AIGVYL    VP LA KWKGK+AEEL
Sbjct: 1   FPPTISPPGSPKSLFLLGAGVRGVSFLGKFIKVYAIGVYLAKSDVPSLASKWKGKSAEEL 60

Query: 77  TESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEK 136
            ES +FFRD++ G  EKF+++  I  L G    +   E+ +A  K  G Y D E +A+EK
Sbjct: 61  EESEDFFRDLLDGGIEKFIRIVPIRNLDGKHLRDGFVESLVARLKKAGTYEDEEEEALEK 120

Query: 137 FTEVFKDEI-FPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMI- 193
           F E FKD+   P GSSILFT+SP GSLTISFSKDG IP+  + V+E+ L+S A+L S + 
Sbjct: 121 FREAFKDKGSVPKGSSILFTRSPDGSLTISFSKDGKIPETELGVVENKLVSRALLLSYLA 180

Query: 194 GKNGVSPAAKKSLAERISAL 213
           GK  VSP AKKS+AE +++L
Sbjct: 181 GKKPVSPEAKKSVAEGLASL 200

Chalcone-flavanone isomerase is a plant enzyme responsible for the isomerisation of chalcone to naringenin, a key step in the biosynthesis of flavonoids. Length = 200

>gnl|CDD|178401 PLN02804, PLN02804, chalcone isomerase

 Score =  108 bits (272), Expect = 2e-29
 Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 8/206 (3%)

Query: 12  VENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGK 71
           VE++ F P +    S+K   L G G   +EI    +KFTAIGVYLE      L   WKGK
Sbjct: 6   VEDIPFPPQITT--SSKPLSLLGHGITDIEIHFLQIKFTAIGVYLEPSVKGHLQ-SWKGK 62

Query: 72  TAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEA 131
              EL E  +FF+ ++  P EK +++ +I  + G+QY  ++  +          Y + E 
Sbjct: 63  PGSELAEDDDFFQALIQAPVEKLIRIVVIKEIKGSQYGVQLESSVRDRLAEDDKYEEEEE 122

Query: 132 KAIEKFTEVFKDEIFPPGSSIL--FTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVL 189
           +A+EK  E F+ + F   S I   F  + G + ISFS +G   ++    +E+  + E + 
Sbjct: 123 EALEKVVEFFQSKYFKKNSIITYHFPATSGIVEISFSTEG--KEESKLTVENANVVEMIQ 180

Query: 190 E-SMIGKNGVSPAAKKSLAERISALL 214
           +  + G+NGVSP+   S+A+ I+A L
Sbjct: 181 KWYLGGENGVSPSTISSVADSIAAEL 206

Length = 206

>gnl|CDD|215177 PLN02311, PLN02311, chalcone isomerase

 Score = 76.5 bits (188), Expect = 8e-17
 Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 6/212 (2%)

Query: 4   SPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPL 63
           S    E    +V F  S+  PG +    L G G R        VK  A G+Y+    +  
Sbjct: 64  SAEYAEETATSVKFQRSLTLPGCSSPLSLLGTGYREKVFAIIGVKVYAAGLYVNPSILSG 123

Query: 64  LAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFF 123
           L+  WKG++A+E+      F  +   P EK +++ ++  + G  + + + E   AI    
Sbjct: 124 LSA-WKGRSADEIQRDSSLFSSIFQAPAEKSLQIVLVRDVDGKTFWDALDE---AISPRI 179

Query: 124 GIYTDAEAKAIEKFTEVFKDEIFPPGSSILFT-QSPGSLTISFSKDGSIPKDGVAVIESN 182
              +  +  A+  F  +F++     G+ I  T  +P  + +  S +G +P    A IES 
Sbjct: 180 KAPSPDDTSALSTFRSIFQNRSLNKGTVIFLTWINPSKMLVCISSEG-LPSSVDATIESG 238

Query: 183 LLSEAVLESMIGKNGVSPAAKKSLAERISALL 214
            ++ A+ +   G + VSP+ K S+A  ++  L
Sbjct: 239 NVTSALFDVFFGDSPVSPSLKASVANGLATTL 270

Length = 271

>gnl|CDD|215613 PLN03174, PLN03174, Chalcone-flavanone isomerase-related; Provisional

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 21/190 (11%)

Query: 34  GAGERGLEIEG-KFVKFTAIGVYLEDDAV-PLLAGKWKGKTAEELTESVEFFRDVVTGPF 91
           G G R   I G K +   A GVY +DD +  LL  K+   +A EL  + EF  D++    
Sbjct: 99  GVGLRKKSILGLKNIDVYAFGVYADDDDLKKLLGEKYGKLSASELKGNKEFIDDLM---- 154

Query: 92  EKFMKVTMILPLTGAQYSEKVAENCIA------IWKFFGIYTDAEAKAIEKFTEVFKDEI 145
           E  +K+T+ L +   + S +   +         + KF G       + ++ FT +FKDE 
Sbjct: 155 EADIKMTVRLQIVYGKLSIRSVRSAFEESVGSRLQKFGGSDNK---ELLQSFTSLFKDEY 211

Query: 146 -FPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKK 204
             P GS I  ++ PG + +  + DG      V  I+S LL  ++L+  IG++     AK+
Sbjct: 212 KIPKGSVIDLSREPGHV-LRTTIDG----KEVGSIQSKLLCRSILDLYIGEDPFDKNAKE 266

Query: 205 SLAERISALL 214
            + E +++LL
Sbjct: 267 DIEENLASLL 276

Length = 278

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
PLN02559	230	chalcone--flavonone isomerase	100.0
PLN02804	206	chalcone isomerase	100.0
PLN02311	271	chalcone isomerase	100.0
PF02431	199	Chalcone: Chalcone-flavanone isomerase; InterPro:	100.0
PLN03175	415	hypothetical protein; Provisional	100.0
PLN03174	278	Chalcone-flavanone isomerase-related; Provisional	100.0

>PLN02559 chalcone--flavonone isomerase

Probab=100.00  E-value=2.5e-57  Score=382.85  Aligned_cols=217  Identities=74%  Similarity=1.146  Sum_probs=209.5

Q ss_pred             CCcceEEeeceecCCcccCCCCCCceeeeeeeeeeeeEcCeeEEEEEEEEeecCCCCchhhhcccCCChhhhhcchHHHH
Q 027531            5 PSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFR   84 (222)
Q Consensus         5 ~~~~~~~v~gv~FP~~i~~~~~~~~L~L~GaGvR~k~i~~~~~kVYa~GlY~~~~~~~~l~~~~~g~~~~~l~~~~~~~~   84 (222)
                      +++..++|+||+||+.++.|+++++|.|.|+|+|.+.|.++++|+||+|+|+++.+...|+.+|+|++++||.+|.+||+
T Consensus         2 ~~~~~v~ve~i~FP~~v~~p~s~~~l~L~GaG~Rg~eI~~~~vKftAiGvYle~~av~~L~~KWKGKsa~EL~~~~~Ff~   81 (230)
T PLN02559          2 PAVTEVQVEGVTFPPSVKPPGSSNPLFLGGAGVRGLEIQGKFIKFTAIGVYLEGNAVPSLAKKWKGKTAEELADSVAFFR   81 (230)
T ss_pred             CccceEeEcceecCCcccCCCCCCceEEEeccccceEEeeEEEEEEEEEEEechhHHHHHHHhhCCcCHHHHhcCHHHHH
Confidence            46678999999999999999988999999999999999999999999999999997788999999999999999999999


Q ss_pred             HhhcCCcceEEEEEEEecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCCCCCEEEEEEeC-CceEE
Q 027531           85 DVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTI  163 (222)
Q Consensus        85 ~li~~~~~k~iriv~~r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~~l~kG~~i~l~~~p-g~l~v  163 (222)
                      +|+.+|++|.+|++++++++|.+|++++++++.+|+++.|.++++|.++|++|.++|+++++|||+.|+|+|.| |.|.+
T Consensus        82 div~~p~EK~~rV~~I~~l~G~qy~~kv~e~~~a~~ks~g~y~daE~~aLekF~~~Fk~~~fp~Gs~I~ft~sp~g~L~i  161 (230)
T PLN02559         82 DVVTGDFEKFTRVTMILPLTGEQYSEKVTENCVAIWKSLGIYTDAEAKAVEKFKEAFKEETFPPGSSILFTHSPTGSLTV  161 (230)
T ss_pred             HHHcCcchhhEEEEEEEeccccchHHHHhHHHHHHHHhcCCcchhHHHHHHHHHHHhcCCCCCCCCEEEEEECCCCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             EEeeCCCCCccceeeecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcccCCcC
Q 027531          164 SFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDKM  221 (222)
Q Consensus       164 ~~~~~g~~~~~~~g~I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll~~~~~~~  221 (222)
                      +|+++|++|....++|+|.++|+|+|++|||++||||++|+++|++|++||++++..+
T Consensus       162 sfs~dg~ipe~~~~~Ienk~l~eAv~e~~IG~~~VSP~aK~slA~~la~ll~~~~~~~  219 (230)
T PLN02559        162 AFSKDSSVPEVGNAVIENKLLCEAVLESIIGKHGVSPAAKLSLAARLSELLKKEKEGE  219 (230)
T ss_pred             EEecCCCCCccceEEEechHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHhccCccc
Confidence            9999999999999999999999999999999999999999999999999999876543

>PLN02804 chalcone isomerase

Probab=100.00  E-value=4.4e-54  Score=361.31  Aligned_cols=202  Identities=33%  Similarity=0.538  Sum_probs=191.4

Q ss_pred             ceEEeeceecCCcccCCCCCCceeeeeeeeeeeeEcCeeEEEEEEEEeecCCCCchhhhcccCCChhhhhcchHHHHHhh
Q 027531            8 TELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVV   87 (222)
Q Consensus         8 ~~~~v~gv~FP~~i~~~~~~~~L~L~GaGvR~k~i~~~~~kVYa~GlY~~~~~~~~l~~~~~g~~~~~l~~~~~~~~~li   87 (222)
                      +.++|+|++||+.++  +++++|.|+|+|+|.+.|.|++|||||+|+|+++++.++| .+|+|++++||.+|++||++|+
T Consensus         2 ~~~~v~~v~FP~~i~--~ss~~l~L~G~G~R~~~I~~~~iK~yAiGvYle~~~~~~L-~kwkgk~a~EL~~~~~Ff~dlv   78 (206)
T PLN02804          2 EMVMVEDIPFPPQIT--TSSKPLSLLGHGITDIEIHFLQIKFTAIGVYLEPSVKGHL-QSWKGKPGSELAEDDDFFQALI   78 (206)
T ss_pred             ceEEecCcCCCceee--cCCCcceEEeecccceEEEeEEEEEEEEEEEecHHHHHHH-HHhcCCCHHHHhcCHHHHHHHH
Confidence            347899999999998  3668999999999999999999999999999999888888 6999999999999999999999


Q ss_pred             cCCcceEEEEEEEecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCCCCCEEEEEEeC--CceEEEE
Q 027531           88 TGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP--GSLTISF  165 (222)
Q Consensus        88 ~~~~~k~iriv~~r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~~l~kG~~i~l~~~p--g~l~v~~  165 (222)
                      ++|++|.+|++++|++++.+|+++++++|++|+++.|.++++|.++|++|.++|+++++|||+.|+|+|+|  |.+.+++
T Consensus        79 ~~p~ek~~Ri~~i~~l~g~qy~~~~ee~~~~rlk~~~~y~d~e~~aL~kf~~~Fk~~~fp~Gs~I~ft~~~~~g~l~Isf  158 (206)
T PLN02804         79 QAPVEKLIRIVVIKEIKGSQYGVQLESSVRDRLAEDDKYEEEEEEALEKVVEFFQSKYFKKNSIITYHFPATSGIVEISF  158 (206)
T ss_pred             cCChhhEEEEEEEecCcCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhCCCcCCCCCEEEEEecCCCCeEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986  7899999


Q ss_pred             eeCCCCCccceeeecCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHH
Q 027531          166 SKDGSIPKDGVAVIESNLLSEAVLESMI-GKNGVSPAAKKSLAERISALL  214 (222)
Q Consensus       166 ~~~g~~~~~~~g~I~~~~~~~aL~~~yL-G~~Pvs~~lK~s~~~~l~~ll  214 (222)
                      +.+|  |....++|+|+++|+|+|++|| |++||||++|+++|++|+++|
T Consensus       159 s~dg--~e~~~~~Ienk~l~~avl~~yi~G~~~VSp~~k~slA~~la~~~  206 (206)
T PLN02804        159 STEG--KEESKLTVENANVVEMIQKWYLGGENGVSPSTISSVADSIAAEL  206 (206)
T ss_pred             ecCC--cccceeEEecHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhC
Confidence            9888  4556788999999999999999 999999999999999999885

>PLN02311 chalcone isomerase

Probab=100.00  E-value=2.6e-53  Score=370.12  Aligned_cols=199  Identities=25%  Similarity=0.427  Sum_probs=187.2

Q ss_pred             eeceecCCcccCCCCCCceeeeeeeeeeeeEcCeeEEEEEEEEeecCCCCchhhhcccCCChhhhhcchHHHHHhhcCCc
Q 027531           12 VENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPF   91 (222)
Q Consensus        12 v~gv~FP~~i~~~~~~~~L~L~GaGvR~k~i~~~~~kVYa~GlY~~~~~~~~l~~~~~g~~~~~l~~~~~~~~~li~~~~   91 (222)
                      .|||+||+.+++|+++++|+|||+|+|+|.|.|++|||||+|||+++++.++|+ +|+|++++||.+|.+||++|+++|+
T Consensus        72 ~TgV~Fp~~v~~~~~s~~L~LnGaGvR~K~I~~~~vKVYA~GLYL~~~~~~~L~-kwkgk~a~eL~~~~~ff~dIi~a~~  150 (271)
T PLN02311         72 ATSVKFQRSLTLPGCSSPLSLLGTGYREKVFAIIGVKVYAAGLYVNPSILSGLS-AWKGRSADEIQRDSSLFSSIFQAPA  150 (271)
T ss_pred             CcCCcCCccccCCCCCCceeEeeeEEeeEEEeeeeEEEEEEEEEechhhhhhHh-hhcCCCHHHHhcchHHHHHHhcCCc
Confidence            899999999999987799999999999999988999999999999999989997 9999999999999999999999999


Q ss_pred             ceEEEEEEEecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCCCCCEEEEEEeC-CceEEEEeeCCC
Q 027531           92 EKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGS  170 (222)
Q Consensus        92 ~k~iriv~~r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~~l~kG~~i~l~~~p-g~l~v~~~~~g~  170 (222)
                      +|++||+++|++++++|++||+|++++|+++.   ++++.++|++|.++|++++++||++|+|+|.| |++++++..+| 
T Consensus       151 eK~irI~~iR~v~g~~~~~A~~eg~~~rlk~~---~~~~~~aLekF~~~F~~~~l~kGd~I~~~~~p~~~~~v~~s~~g-  226 (271)
T PLN02311        151 EKSLQIVLVRDVDGKTFWDALDEAISPRIKAP---SPDDTSALSTFRSIFQNRSLNKGTVIFLTWINPSKMLVCISSEG-  226 (271)
T ss_pred             ceEEEEEEEecCCHHHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHhcCCCCCCCCEEEEEEeCCCceEEEEecCC-
Confidence            99999999999999999999999999999764   45678899999999998899999999999999 68999887666 


Q ss_pred             CCccceeeecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHc
Q 027531          171 IPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLN  215 (222)
Q Consensus       171 ~~~~~~g~I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll~  215 (222)
                      .+++..|+|+++.||+|||++|||++||||+||+++++++++||+
T Consensus       227 ~~~~~~g~Ies~~f~~ALf~i~LGd~PVs~~lK~sla~~la~ll~  271 (271)
T PLN02311        227 LPSSVDATIESGNVTSALFDVFFGDSPVSPSLKASVANGLATTLK  271 (271)
T ss_pred             cccceeEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhC
Confidence            466678999999999999999999999999999999999999985

>PF02431 Chalcone: Chalcone-flavanone isomerase; InterPro: IPR003466 Chalcone isomerase (5

Probab=100.00  E-value=2.5e-49  Score=333.16  Aligned_cols=195  Identities=33%  Similarity=0.562  Sum_probs=172.2

Q ss_pred             cCCcccCCCCCCceeeeeeeeeeeeEcCeeEEEEEEEEeecCCCCchhhhcccCCChh-hhhcchHHHHHhhcCCcceEE
Q 027531           17 FTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAE-ELTESVEFFRDVVTGPFEKFM   95 (222)
Q Consensus        17 FP~~i~~~~~~~~L~L~GaGvR~k~i~~~~~kVYa~GlY~~~~~~~~l~~~~~g~~~~-~l~~~~~~~~~li~~~~~k~i   95 (222)
                      ||.++++|..+++|+|+|+|||+|+|+  +||||++|||++++..+.+...|.++.+. ++.++++||++|++++++|++
T Consensus         1 FP~~i~~p~~~~~l~L~G~GvR~~~~~--~ikVYavG~Yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~k~i   78 (199)
T PF02431_consen    1 FPKKITSPTSSEELSLLGAGVRTVSFL--NIKVYAVGLYVDDSDAKKLLKKWKGKSASDDLEKSEDFFDDLLDSPVEKAI   78 (199)
T ss_dssp             EESEEE-TTTSSEEEEEEEEEEEEEET--EEEEEEEEEEEECCHHHHHHHHHTTT-HHHHHHT-HHHHHHHHHSSS-EEE
T ss_pred             CCCcccCCCCCCCeEEEEEEEeeEEEE--EEEEEEEEEEEChhHhhhHHHhhhcccCcccccccHHHHHHHhcCCccEEE
Confidence            899999998889999999999999975  89999999999999888888899999987 999999999999999999999


Q ss_pred             EEEEEecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCC-CCCCCCEEEEEEeC-CceEEEEeeCCCCCc
Q 027531           96 KVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDE-IFPPGSSILFTQSP-GSLTISFSKDGSIPK  173 (222)
Q Consensus        96 riv~~r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~-~l~kG~~i~l~~~p-g~l~v~~~~~g~~~~  173 (222)
                      ||+++|++++++|+++|.++|.+|++..+...++++++|++|+++|+.+ +++||++|+|+|.| |++.++|..+++.++
T Consensus        79 ri~~~R~~~~~~l~d~~~~~i~~r~~~~~~~~~~~~~~l~~f~~~F~~~g~~~kG~~i~l~~~~~g~l~v~~~~~~~~~~  158 (199)
T PF02431_consen   79 RIVPVRNVDGKHLRDAFIESIRPRLKAAGTEEEALEEALDEFKSLFKSKGSVPKGDVITLTWSPDGSLTVSYNGQGKIPG  158 (199)
T ss_dssp             EEEESSSEEHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHTTB-EE-TT-EEEEEEETTTEEEEEEESSSS--S
T ss_pred             EEEEEecCCHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHhcccccccCCCEEEEEECCCCcEEEEEecCCCCCc
Confidence            9999999999999999999999999887555678889999999999877 89999999999999 789999988887778


Q ss_pred             cceeeecCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHH
Q 027531          174 DGVAVIESNLLSEAVLESMI-GKNGVSPAAKKSLAERISAL  213 (222)
Q Consensus       174 ~~~g~I~~~~~~~aL~~~yL-G~~Pvs~~lK~s~~~~l~~l  213 (222)
                      +..|+|++|.||+|||++|| |++|+||+||+++++||++|
T Consensus       159 ~~~g~I~~~~~~~al~~~yL~G~~pvs~~~k~s~~~~l~~l  199 (199)
T PF02431_consen  159 KELGTIKSPRFARALFDIYLSGDKPVSPSLKKSVAEGLASL  199 (199)
T ss_dssp             SECEEEE-HHHHHHHHHHHH-STT-S-HHHHHHHHHHHHHH
T ss_pred             cceeEEcCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhcC
Confidence            89999999999999999999 99999999999999999986

5.1.6 from EC) also known as chalcone-flavanone isomerase, is a plant enzyme responsible for the isomerisation of chalcone to naringenin a key step in the biosynthesis of flavonoids. The Petunia hybrida (Petunia) genome contains two genes coding for very similar enzymes, ChiA and ChiB, but only the first seems to encode a functional chalcone isomerase. Chalcone isomerase has a core 2-layer alpha/beta structure consisting of beta(3)-alpha(2)-beta-alpha(2)-beta(3) []. This entry represents a subgroup of Chalcone isomerase.; GO: 0016872 intramolecular lyase activity, 0042398 cellular modified amino acid biosynthetic process; PDB: 1JX0_B 1JEP_A 1EYP_B 1JX1_B 1EYQ_B 1FM8_A 1FM7_A 4DOL_A 4DOI_A 4DOK_B ....

>PLN03175 hypothetical protein; Provisional

Probab=100.00  E-value=2.5e-47  Score=344.55  Aligned_cols=198  Identities=20%  Similarity=0.340  Sum_probs=181.3

Q ss_pred             eeceecCCccc-CCCCCCceeeeeeeeeeeeEcC-eeEEEEEEEEeecCCC-CchhhhcccCCChhhhhcchHHHHHhhc
Q 027531           12 VENVTFTPSVQ-PPGSTKSHFLGGAGERGLEIEG-KFVKFTAIGVYLEDDA-VPLLAGKWKGKTAEELTESVEFFRDVVT   88 (222)
Q Consensus        12 v~gv~FP~~i~-~~~~~~~L~L~GaGvR~k~i~~-~~~kVYa~GlY~~~~~-~~~l~~~~~g~~~~~l~~~~~~~~~li~   88 (222)
                      .||++||..++ .|++.+++.|+|+|+|.+.|.+ ++|||||+|+|+++.+ .++|+.+|+|++++||.++.+||++|++
T Consensus       212 kTgv~FP~~l~~~p~s~~sl~L~G~GvR~~eI~~~k~IKfyAiGVYle~~~v~~~L~~KwkGKsa~EL~~s~eFf~DIIt  291 (415)
T PLN03175        212 RTGIEFPMLLDENNSSLTSEVLVGTGSRTMKIIRIKSLKVYAFGFYVHPNSVCEKLGPKYASVPASELKKCPDFYEDLLR  291 (415)
T ss_pred             CCCCcCCccccCCCCCCCceeeeecccceeEEEeeceeEEEEEEEEeccchHHHHHhhhhCCCcHHHHccCHHHHHHHHc
Confidence            78999999997 6666689999999999999985 7999999999999995 7789999999999999999999999999


Q ss_pred             CCcceEEEEEEE-ecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc-CCCCCCCCEEEEEEeC-CceEEEE
Q 027531           89 GPFEKFMKVTMI-LPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFK-DEIFPPGSSILFTQSP-GSLTISF  165 (222)
Q Consensus        89 ~~~~k~iriv~~-r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~-~~~l~kG~~i~l~~~p-g~l~v~~  165 (222)
                      +|++++|||+++ +.++..++.+|++|++.+|+++.+  ++++.++|++|.++|. +.++|||++|+|+|.| |++.+++
T Consensus       292 ap~~m~IRLVii~~gI~~sk~~~Afees~g~RLkkt~--gdae~eAIeKF~s~F~~di~fpkGssI~Ft~sP~ggLtisI  369 (415)
T PLN03175        292 EDIVMTVRLVVNYNGLKINTVRDAFEKSLRNRLQKMN--PNTDYNCLKTFGSFFTEDIPIPAGTKIDFRRTSDGQLITEI  369 (415)
T ss_pred             CCccEEEEEEEecCCccHHHHHHHHHHHHHHHHhccC--CchHHHHHHHHHHHhhcccccCCCCEEEEEEcCCCceEEEE
Confidence            999999999997 568999999999999999999875  4667778999999995 5589999999999999 6788764


Q ss_pred             eeCCCCCccceeeecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHccc
Q 027531          166 SKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVT  217 (222)
Q Consensus       166 ~~~g~~~~~~~g~I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll~~~  217 (222)
                        ||    +..|+|+++.||+|||++|||++||||+||++++++|++||++|
T Consensus       370 --nG----~~vgvIEnk~L~eALfdiyLGd~PVSPslKeslA~~La~Ll~~~  415 (415)
T PLN03175        370 --GG----NQIGAVRSKDLCRAFFDMYIGDVPVSEQTKEEIGQNVAGIIRRC  415 (415)
T ss_pred             --CC----eeeeEeccHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhcC
Confidence              44    57899999999999999999999999999999999999999876

>PLN03174 Chalcone-flavanone isomerase-related; Provisional

Probab=100.00  E-value=7.3e-45  Score=318.37  Aligned_cols=192  Identities=28%  Similarity=0.432  Sum_probs=170.8

Q ss_pred             eeceecCCcccCCCCCCceeeeeeeeeeeeEcCe-eEEEEEEEEeecCCCCch-hhhcccCCChhhhhcchHHHHHhhcC
Q 027531           12 VENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGK-FVKFTAIGVYLEDDAVPL-LAGKWKGKTAEELTESVEFFRDVVTG   89 (222)
Q Consensus        12 v~gv~FP~~i~~~~~~~~L~L~GaGvR~k~i~~~-~~kVYa~GlY~~~~~~~~-l~~~~~g~~~~~l~~~~~~~~~li~~   89 (222)
                      .|||+||++++.+     .+|+|+|+|.|.|+++ +||||++|||+++.+.+. |+.+|+|++++||.++.+||++|+++
T Consensus        82 ~tGv~FP~~l~~~-----~~LLGaGvR~k~i~glk~IKvYAiGlYl~~~~v~~~L~~k~kgks~~El~~s~~f~~dil~~  156 (278)
T PLN03174         82 KTGVSFPAEIGDS-----RRLLGVGLRKKSILGLKNIDVYAFGVYADDDDLKKLLGEKYGKLSASELKGNKEFIDDLMEA  156 (278)
T ss_pred             CCCCcCCCcccCC-----CcceeeeeeeEEEeccceEEEEEEEEEechhHhHHHhhhhhcCCChhhhhcCHHHHHHHHcC
Confidence            7899999999852     2377999999999774 799999999999986665 88899999999999999999999999


Q ss_pred             CcceEEEEEEEec-CChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCC-CCCCCCEEEEEEeC-CceEEEEe
Q 027531           90 PFEKFMKVTMILP-LTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDE-IFPPGSSILFTQSP-GSLTISFS  166 (222)
Q Consensus        90 ~~~k~iriv~~r~-v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~-~l~kG~~i~l~~~p-g~l~v~~~  166 (222)
                      |++|++||++++. ++.+++++|+.+++.+|++..+.  +++.+.|++|.++|+++ .++||++|+|+|.| +++.+++ 
T Consensus       157 ~~ek~iRL~iiy~~v~~~~v~~A~~esv~~rl~~~~~--~e~~e~IekF~~~F~~~~~l~kGdvI~~~~~Pg~gl~vsi-  233 (278)
T PLN03174        157 DIKMTVRLQIVYGKLSIRSVRSAFEESVGSRLQKFGG--SDNKELLQSFTSLFKDEYKIPKGSVIDLSREPGHVLRTTI-  233 (278)
T ss_pred             CCceEEEEEEEeccccHHHHHHHHHHHHHHhhhccCC--cchHHHHHHHHHHHhccccCCCCCEEEEEEcCCCeEEEEE-
Confidence            9999999999885 89999999999999999976532  34455799999999988 58999999999999 5677754 


Q ss_pred             eCCCCCccceeeecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcc
Q 027531          167 KDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNV  216 (222)
Q Consensus       167 ~~g~~~~~~~g~I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll~~  216 (222)
                       ||    ++.|+|+++.||+|||++|||++||||+||++|+++|++||++
T Consensus       234 -~G----k~~g~Ie~~~f~~ALf~iyLGd~PVsp~lK~sll~~la~ll~~  278 (278)
T PLN03174        234 -DG----KEVGSIQSKLLCRSILDLYIGEDPFDKNAKEDIEENLASLLQD  278 (278)
T ss_pred             -CC----EEeeEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhcC
Confidence             55    5789999999999999999999999999999999999999963

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
4doi_A	246	Crystal Structure Of Arabidopsis Thaliana Chalcone		6e-83
1eyp_A	222	Chalcone Isomerase Length = 222		8e-63
1jx1_A	222	Chalcone Isomerase--T48a Mutant Length = 222		3e-62
1jx0_A	222	Chalcone Isomerase--y106f Mutant Length = 222		3e-62
4dok_A	208	Crystal Structure Of Arabidopsis Thaliana Chalcone-		4e-13
4dol_A	217	Crystal Structure Of Arabidopsis Thaliana Fatty-Aci		4e-10
4doo_A	205	Crystal Structure Of Arabidopsis Thaliana Fatty-Aci		2e-06

>pdb|4DOI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Chalcone Isomerase At3g55120 (Atchi) Length = 246

Iteration: 1
 Score =  303 bits (775), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 149/220 (67%), Positives = 181/220 (82%), Gaps = 1/220 (0%)
Query: 2   NPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAV 61
           +P P+VT+L V++VTF PSV+ P S+   FLGGAG RGL+I+GKFV FT IGVYLE +AV
Sbjct: 11  SPFPAVTKLHVDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGKFVIFTVIGVYLEGNAV 70
Query: 62  PLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWK 121
           P L+ KWKGKT EELTES+ FFR++VTG FEKF+KVTM LPLTG QYSEKV ENC+AIWK
Sbjct: 71  PSLSVKWKGKTTEELTESIPFFREIVTGAFEKFIKVTMKLPLTGQQYSEKVTENCVAIWK 130
Query: 122 FFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIE 180
             G+YTD EAKA+EKF E+FK+E FPPGSSILF  SP GSLT++FSKD SIP+ G+AVIE
Sbjct: 131 QLGLYTDCEAKAVEKFLEIFKEETFPPGSSILFALSPTGSLTVAFSKDDSIPETGIAVIE 190
Query: 181 SNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDK 220
           + LL+EAVLES+IGKNGVSP  + S+AER+S L+    D+
Sbjct: 191 NKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLMMKNKDE 230

>pdb|1EYP|A Chain A, Chalcone Isomerase Length = 222

Iteration: 1
 Score =  236 bits (602), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 118/211 (55%), Positives = 156/211 (73%), Gaps = 1/211 (0%)
Query: 6   SVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLA 65
           S+T + VEN+ +   V  P + KS+FLGGAGERGL IEG F+KFTAIGVYLED AV  LA
Sbjct: 4   SITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLA 63
Query: 66  GKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGI 125
            KWKGK++EEL E+++F+RD+++GPFEK ++ + I  L+G +YS KV ENC+A  K  G 
Sbjct: 64  AKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGT 123
Query: 126 YTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLL 184
           Y DAEA+A++KF E FK   FPPG+S+ + QSP G L +SFS D SIP+   A+IE+  +
Sbjct: 124 YGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAV 183
Query: 185 SEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           S AVLE+MIG++ VSP  K+ LA R+ ALLN
Sbjct: 184 SSAVLETMIGEHAVSPDLKRCLAARLPALLN 214

>pdb|1JX1|A Chain A, Chalcone Isomerase--T48a Mutant Length = 222

Iteration: 1
 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/211 (55%), Positives = 155/211 (73%), Gaps = 1/211 (0%)
Query: 6   SVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLA 65
           S+T + VEN+ +   V  P + KS+FLGGAGERGL IEG F+KF AIGVYLED AV  LA
Sbjct: 4   SITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFAAIGVYLEDIAVASLA 63
Query: 66  GKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGI 125
            KWKGK++EEL E+++F+RD+++GPFEK ++ + I  L+G +YS KV ENC+A  K  G 
Sbjct: 64  AKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGT 123
Query: 126 YTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLL 184
           Y DAEA+A++KF E FK   FPPG+S+ + QSP G L +SFS D SIP+   A+IE+  +
Sbjct: 124 YGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAV 183
Query: 185 SEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           S AVLE+MIG++ VSP  K+ LA R+ ALLN
Sbjct: 184 SSAVLETMIGEHAVSPDLKRCLAARLPALLN 214

>pdb|1JX0|A Chain A, Chalcone Isomerase--y106f Mutant Length = 222

Iteration: 1
 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/211 (55%), Positives = 156/211 (73%), Gaps = 1/211 (0%)
Query: 6   SVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLA 65
           S+T + VEN+ +   V  P + KS+FLGGAGERGL IEG F+KFTAIGVYLED AV  LA
Sbjct: 4   SITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLA 63
Query: 66  GKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGI 125
            KWKGK++EEL E+++F+RD+++GPFEK ++ + I  L+G ++S KV ENC+A  K  G 
Sbjct: 64  AKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRELSGPEFSRKVMENCVAHLKSVGT 123
Query: 126 YTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLL 184
           Y DAEA+A++KF E FK   FPPG+S+ + QSP G L +SFS D SIP+   A+IE+  +
Sbjct: 124 YGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAV 183
Query: 185 SEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           S AVLE+MIG++ VSP  K+ LA R+ ALLN
Sbjct: 184 SSAVLETMIGEHAVSPDLKRCLAARLPALLN 214

>pdb|4DOK|A Chain A, Crystal Structure Of Arabidopsis Thaliana Chalcone-Isomerase Like Protein At5g05270 (Atchil) Length = 208

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 6/207 (2%)
Query: 10  LQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWK 69
           + V  V F P +    ++K   L G G   +EI    VKFTAIGVYL+   V      WK
Sbjct: 5   VMVHEVPFPPQII---TSKPLSLLGQGITDIEIHFLQVKFTAIGVYLDPSDVKTHLDNWK 61
Query: 70  GKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDA 129
           GKT +EL    +FF  + +   EK ++V +I  + GAQY  ++             Y + 
Sbjct: 62  GKTGKELAGDDDFFDALASAEMEKVIRVVVIKEIKGAQYGVQLENTVRDRLAEEDKYEEE 121
Query: 130 EAKAIEKFTEVFKDEIFPPGSSIL--FTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEA 187
           E   +EK    F+ + F   S I   F+   G   I F  +G   ++ + V  +N++   
Sbjct: 122 EETELEKVVGFFQSKYFKANSVITYHFSAKDGICEIGFETEGK-EEEKLKVENANVVGMM 180
Query: 188 VLESMIGKNGVSPAAKKSLAERISALL 214
               + G  GVSP+   S+A+ ISA+L
Sbjct: 181 QRWYLSGSRGVSPSTIVSIADSISAVL 207

>pdb|4DOL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid Binding Protein At1g53520 (Atfap3) Length = 217

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 12/205 (5%)
Query: 14  NVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKF----VKFTAIGVYLEDDAVPLLAGKWK 69
           +V F  SV  PG +    L G G R    E KF    VK  A G Y+ +  +  L+  W 
Sbjct: 20  SVKFKRSVTLPGCSSPLSLLGTGFR----EKKFAIIGVKVYAAGYYVNESILSGLSA-WT 74
Query: 70  GKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDA 129
           G++A+E+      F  +     EK +++ ++  + G  + + + E   AI       +  
Sbjct: 75  GRSADEIQRDSSLFVSIFQAQAEKSLQIVLVRDVDGKTFWDALDE---AISPRIKSPSSE 131
Query: 130 EAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVL 189
           +  A+  F  +F++     GS IL T    S  +     G +P +  A IES  ++ A+ 
Sbjct: 132 DTTALSTFCCIFQNRPLNKGSVILLTWINTSNMLVSVSSGGLPTNVDATIESGNVTSALF 191
Query: 190 ESMIGKNGVSPAAKKSLAERISALL 214
           +   G + VSP  K S+A +++  L
Sbjct: 192 DVFFGDSPVSPTLKSSVANQLAMTL 216

>pdb|4DOO|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid Binding Protein At3g63170 (Atfap1) Length = 205

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 21/200 (10%)
Query: 23  PPGSTKSHFLGGAGERGLEIEG-KFVKFTAIGVYLE-DDAVPLLAGKWKGKTAEELTESV 80
           P     S  L G G R   + G K +   A GVY + DD   L+  K+    A E+  + 
Sbjct: 15  PASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNK 74
Query: 81  EFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIA------IWKFFGIYTDAEAKAI 134
            F  D++    E  +K+T+ L +   + + +   N         + KF G   D   + +
Sbjct: 75  SFMDDLM----EADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDND---ELL 127
Query: 135 EKFTEVFKDEI-FPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMI 193
           + FT +FKDE   P  S+I  T+ PG + +S + +G+     V  ++S+LL  ++L+  I
Sbjct: 128 QSFTSLFKDEYKIPRNSTIDLTKDPGHV-LSVAIEGN----HVGSVKSHLLCRSILDLYI 182
Query: 194 GKNGVSPAAKKSLAERISAL 213
           G+      A++   +  ++L
Sbjct: 183 GEEPFDKNAREDFLDNAASL 202

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
4doi_A	246	Chalcone--flavonone isomerase 1; chalcone-flavanon	3e-90
1eyq_A	222	Chalcone-flavonone isomerase 1; chalcone isomerase	2e-84
4dok_A	208	Similarity to chalcone-flavonone isomerase; chalco	1e-75
4dol_A	217	AT1G53520, 94270-95700, chalcon; chalcone-isomeras	9e-64
4doo_A	205	Chalcone-flavanone isomerase family protein; chalc	2e-46
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-12

>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana} Length = 246

 Score =  264 bits (676), Expect = 3e-90
 Identities = 149/221 (67%), Positives = 181/221 (81%), Gaps = 1/221 (0%)

Query: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60
            +P P+VT+L V++VTF PSV+ P S+   FLGGAG RGL+I+GKFV FT IGVYLE +A
Sbjct: 10  PSPFPAVTKLHVDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGKFVIFTVIGVYLEGNA 69

Query: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120
           VP L+ KWKGKT EELTES+ FFR++VTG FEKF+KVTM LPLTG QYSEKV ENC+AIW
Sbjct: 70  VPSLSVKWKGKTTEELTESIPFFREIVTGAFEKFIKVTMKLPLTGQQYSEKVTENCVAIW 129

Query: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVI 179
           K  G+YTD EAKA+EKF E+FK+E FPPGSSILF  SP GSLT++FSKD SIP+ G+AVI
Sbjct: 130 KQLGLYTDCEAKAVEKFLEIFKEETFPPGSSILFALSPTGSLTVAFSKDDSIPETGIAVI 189

Query: 180 ESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDK 220
           E+ LL+EAVLES+IGKNGVSP  + S+AER+S L+    D+
Sbjct: 190 ENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLMMKNKDE 230

>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A* Length = 222

 Score =  249 bits (636), Expect = 2e-84
 Identities = 119/219 (54%), Positives = 160/219 (73%), Gaps = 1/219 (0%)

Query: 4   SPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPL 63
           + S+T + VEN+ +   V  P + KS+FLGGAGERGL IEG F+KFTAIGVYLED AV  
Sbjct: 2   AASITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVAS 61

Query: 64  LAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFF 123
           LA KWKGK++EEL E+++F+RD+++GPFEK ++ + I  L+G +YS KV ENC+A  K  
Sbjct: 62  LAAKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSV 121

Query: 124 GIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESN 182
           G Y DAEA+A++KF E FK   FPPG+S+ + QSP G L +SFS D SIP+   A+IE+ 
Sbjct: 122 GTYGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENK 181

Query: 183 LLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDKM 221
            +S AVLE+MIG++ VSP  K+ LA R+ ALLN  + K+
Sbjct: 182 AVSSAVLETMIGEHAVSPDLKRCLAARLPALLNEGAFKI 220

>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana} Length = 208

 Score =  226 bits (577), Expect = 1e-75
 Identities = 64/212 (30%), Positives = 95/212 (44%), Gaps = 8/212 (3%)

Query: 6   SVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLA 65
           S   + V  V F P +    ++K   L G G   +EI    VKFTAIGVYL+   V    
Sbjct: 1   STGMVMVHEVPFPPQII---TSKPLSLLGQGITDIEIHFLQVKFTAIGVYLDPSDVKTHL 57

Query: 66  GKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGI 125
             WKGKT +EL    +FF  + +   EK ++V +I  + GAQY  ++             
Sbjct: 58  DNWKGKTGKELAGDDDFFDALASAEMEKVIRVVVIKEIKGAQYGVQLENTVRDRLAEEDK 117

Query: 126 YTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP--GSLTISFSKDGSIPKDGVAVIESNL 183
           Y + E   +EK    F+ + F   S I +  S   G   I F  +G         +E+  
Sbjct: 118 YEEEEETELEKVVGFFQSKYFKANSVITYHFSAKDGICEIGFETEGKEE--EKLKVENAN 175

Query: 184 LSEAVLE-SMIGKNGVSPAAKKSLAERISALL 214
           +   +    + G  GVSP+   S+A+ ISA+L
Sbjct: 176 VVGMMQRWYLSGSRGVSPSTIVSIADSISAVL 207

>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana} Length = 217

 Score =  196 bits (499), Expect = 9e-64
 Identities = 51/214 (23%), Positives = 92/214 (42%), Gaps = 4/214 (1%)

Query: 1   MNPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDA 60
           +  +    E    +V F  SV  PG +    L G G R  +     VK  A G Y+ +  
Sbjct: 7   VGNAEDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVNESI 66

Query: 61  VPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120
           +  L+  W G++A+E+      F  +     EK +++ ++  + G  + + + E      
Sbjct: 67  LSGLS-AWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLVRDVDGKTFWDALDEAISPRI 125

Query: 121 KFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIE 180
           K     +  +  A+  F  +F++     GS IL T    S  +     G +P +  A IE
Sbjct: 126 K---SPSSEDTTALSTFCCIFQNRPLNKGSVILLTWINTSNMLVSVSSGGLPTNVDATIE 182

Query: 181 SNLLSEAVLESMIGKNGVSPAAKKSLAERISALL 214
           S  ++ A+ +   G + VSP  K S+A +++  L
Sbjct: 183 SGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL 216

>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana} Length = 205

 Score =  151 bits (383), Expect = 2e-46
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 11/197 (5%)

Query: 23  PPGSTKSHFLGGAGERGLEIEG-KFVKFTAIGVYLEDDAVP-LLAGKWKGKTAEELTESV 80
           P     S  L G G R   + G K +   A GVY + D V  L+  K+    A E+  + 
Sbjct: 15  PASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNK 74

Query: 81  EFFRDVVTGPFEKFMKVTMIL-PLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTE 139
            F  D++    +  +++ ++   L          E+     K FG   + E   ++ FT 
Sbjct: 75  SFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDNDE--LLQSFTS 132

Query: 140 VFKDEI-FPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGV 198
           +FKDE   P  S+I  T+ PG +        +I  + V  ++S+LL  ++L+  IG+   
Sbjct: 133 LFKDEYKIPRNSTIDLTKDPGHVLSV-----AIEGNHVGSVKSHLLCRSILDLYIGEEPF 187

Query: 199 SPAAKKSLAERISALLN 215
              A++   +  ++L  
Sbjct: 188 DKNAREDFLDNAASLAF 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 7e-12
 Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 41/180 (22%)

Query: 31  FLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGP 90
           FL  A    + ++   +  T       D+   LL  K+     ++L             P
Sbjct: 280 FLSAATTTHISLDHHSMTLT------PDEVKSLLL-KYLDCRPQDL-------------P 319

Query: 91  FEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYT-DAEAKAIEKFTEVFKDEIFPPG 149
            E    V    P   +  +E + +  +A W  +     D     IE    V +   +   
Sbjct: 320 RE----VLTTNPRRLSIIAESIRDG-LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK- 373

Query: 150 SSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAER 209
              +F +    L++ F     IP   +++I  +++   V   ++ K       K SL E+
Sbjct: 374 ---MFDR----LSV-FPPSAHIPTILLSLIWFDVIKSDV-MVVVNK-----LHKYSLVEK 419

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
4doi_A	246	Chalcone--flavonone isomerase 1; chalcone-flavanon	100.0
1eyq_A	222	Chalcone-flavonone isomerase 1; chalcone isomerase	100.0
4dok_A	208	Similarity to chalcone-flavonone isomerase; chalco	100.0
4dol_A	217	AT1G53520, 94270-95700, chalcon; chalcone-isomeras	100.0
4doo_A	205	Chalcone-flavanone isomerase family protein; chalc	100.0

>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}

Probab=100.00  E-value=8.8e-62  Score=418.44  Aligned_cols=217  Identities=68%  Similarity=1.106  Sum_probs=208.4

Q ss_pred             CCcceEEeeceecCCcccCCCCCCceeeeeeeeeeeeEcCeeEEEEEEEEeecCCCCchhhhcccCCChhhhhcchHHHH
Q 027531            5 PSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFR   84 (222)
Q Consensus         5 ~~~~~~~v~gv~FP~~i~~~~~~~~L~L~GaGvR~k~i~~~~~kVYa~GlY~~~~~~~~l~~~~~g~~~~~l~~~~~~~~   84 (222)
                      +++++++|+||+||+++++|+++++|+|||+|+|+|.|+|++|||||+|||+++++.++|+.+|+|++++||.++.+||+
T Consensus        14 ~~~~~v~V~gV~FP~~v~~p~~~~~L~L~GaGvR~k~I~~~~vKvYAiGlYl~~~~~~~L~~kwkgk~~~eL~~~~~ff~   93 (246)
T 4doi_A           14 PAVTKLHVDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGKFVIFTVIGVYLEGNAVPSLSVKWKGKTTEELTESIPFFR   93 (246)
T ss_dssp             -CCCCEEETTEEECSEEECTTTCCEEEEEEEEEEEEEETTEEEEEEEEEEEECTTHHHHHHHHHTTCCHHHHHHCHHHHH
T ss_pred             CccceeEECceECCCeeccCCCCCceeEecceeeceeeeeeEEEEEEEEEEechhHHHHhhhhhcCCCHHHhcccHHHHH
Confidence            57789999999999999999889999999999999999999999999999999998889999999999999999999999


Q ss_pred             HhhcCCcceEEEEEEEecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCCCCCEEEEEEeC-CceEE
Q 027531           85 DVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTI  163 (222)
Q Consensus        85 ~li~~~~~k~iriv~~r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~~l~kG~~i~l~~~p-g~l~v  163 (222)
                      +|+++|++|++||+++|++++++|+++|+|+|++|+++.|.+++++.++|++|.++|++++++||++|+|+|.| |+++|
T Consensus        94 ~il~~p~eK~lrl~~ir~l~g~~~~~al~e~l~~rlk~~g~~~~~e~~aL~~F~~~F~~~~l~kGs~I~~~~~p~g~l~i  173 (246)
T 4doi_A           94 EIVTGAFEKFIKVTMKLPLTGQQYSEKVTENCVAIWKQLGLYTDCEAKAVEKFLEIFKEETFPPGSSILFALSPTGSLTV  173 (246)
T ss_dssp             HHHHCSSCEEEEEEESSCEEHHHHHHHHTTTHHHHHHHHTCCCHHHHHHHHHHHHHHTTCEECTTCEEEEEECTTSEEEE
T ss_pred             HHHcCCcceEEEEEEEecCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccCcCCCCCEEEEEEeCCCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999998899999999999999 68999


Q ss_pred             EEeeCCCCCccceeeecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcccCCcC
Q 027531          164 SFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDKM  221 (222)
Q Consensus       164 ~~~~~g~~~~~~~g~I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll~~~~~~~  221 (222)
                      +|..||++|....++|++++||+|||++|||++||||+||+++++++++||+++++++
T Consensus       174 ~~s~~G~~p~~~~~~I~s~~l~~All~~ylG~~pVsp~lK~sla~~la~ll~~~~~~~  231 (246)
T 4doi_A          174 AFSKDDSIPETGIAVIENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLMMKNKDEK  231 (246)
T ss_dssp             EEESSSCCCSSCSEEEECHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHHTTHHHHC
T ss_pred             EEecCCccccccccccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCChhh
Confidence            9999998887778999999999999999999999999999999999999999987765

>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*

Probab=100.00  E-value=7.2e-61  Score=408.65  Aligned_cols=216  Identities=55%  Similarity=0.898  Sum_probs=203.3

Q ss_pred             CcceEEeeceecCCcccCCCCCCceeeeeeeeeeeeEcCeeEEEEEEEEeecCCCCchhhhcccCCChhhhhcchHHHHH
Q 027531            6 SVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRD   85 (222)
Q Consensus         6 ~~~~~~v~gv~FP~~i~~~~~~~~L~L~GaGvR~k~i~~~~~kVYa~GlY~~~~~~~~l~~~~~g~~~~~l~~~~~~~~~   85 (222)
                      ++++++|+||+||+++++|+++++|+|||+|+|+|.|+|++|||||+|||+++++.++|+.+|+|++++||.+|++||++
T Consensus         4 ~~~~v~v~gv~FP~~~~~p~~~~~L~L~GaGvR~k~i~~~~iKvYa~GlYl~~~~~~~L~~k~kg~~a~el~~~~~f~~~   83 (222)
T 1eyq_A            4 SITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRD   83 (222)
T ss_dssp             CCCCEEETTEEECSEEECTTTCCEEEEEEEEEEEEEETTEEEEEEEEEEEEETTHHHHHHHHHTTCCHHHHHTCHHHHHH
T ss_pred             ccccEEEcceECCCccccCCCCCceEEeeeEEEEEEeeceEEEEEEEEEEeCHHHhhHhhhhhcCCCHHHhcccHHHHHH
Confidence            56789999999999999998889999999999999999999999999999999988899999999999999999999999


Q ss_pred             hhcCCcceEEEEEEEecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCCCCCEEEEEEeC-CceEEE
Q 027531           86 VVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTIS  164 (222)
Q Consensus        86 li~~~~~k~iriv~~r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~~l~kG~~i~l~~~p-g~l~v~  164 (222)
                      |+++|++|++||+++|++++++|++||+|++++|+++.|++++++.++|++|+++|++++++||++|+|+|.| |+++|+
T Consensus        84 li~~~~~k~irl~~i~~v~g~~~~~a~~e~~~~~~~~~g~~~~~e~~~L~~f~~~F~~~~~~kG~~i~~~~~p~g~l~is  163 (222)
T 1eyq_A           84 IISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLS  163 (222)
T ss_dssp             HHHCSSCEEEEEEESSCEEHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCEECTTCEEEEEEETTTEEEEE
T ss_pred             HHcCCCceEEEEEEEeCCCHHHHHHHHHHHHHHHHhccCccccchHHHHHHHHHHhCCCCCCCCCEEEEEEcCCCceEEE
Confidence            9999999999999999999999999999999999999898999999999999999988789999999999999 789999


Q ss_pred             EeeCCCCCccceeeecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcccCCcC
Q 027531          165 FSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDKM  221 (222)
Q Consensus       165 ~~~~g~~~~~~~g~I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll~~~~~~~  221 (222)
                      |+.||++|....|+|++++||+|||++|||++||||+||++|+++|++||++++.|-
T Consensus       164 ~~~~g~~p~~~~~~I~~~~~~~Al~~i~lG~~pvsp~lK~sl~~~l~~ll~~~~~~~  220 (222)
T 1eyq_A          164 FSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLNEGAFKI  220 (222)
T ss_dssp             EESSSSCCSSCSEEEECHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHC-----
T ss_pred             EEeCCccccccccccCCHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhhccccc
Confidence            999998887788999999999999999999999999999999999999999998763

>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}

Probab=100.00  E-value=6e-57  Score=380.80  Aligned_cols=203  Identities=32%  Similarity=0.488  Sum_probs=190.6

Q ss_pred             cceEEeeceecCCcccCCCCCCceeeeeeeeeeeeEcCeeEEEEEEEEeecC-CCCchhhhcccCCChhhhhcchHHHHH
Q 027531            7 VTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLED-DAVPLLAGKWKGKTAEELTESVEFFRD   85 (222)
Q Consensus         7 ~~~~~v~gv~FP~~i~~~~~~~~L~L~GaGvR~k~i~~~~~kVYa~GlY~~~-~~~~~l~~~~~g~~~~~l~~~~~~~~~   85 (222)
                      .++++|+||+||++++   ++++|+|||+|+|+|+|+|++|||||+|+|+++ ...++| .+|+|++++||.+|++||++
T Consensus         2 ~~~~~v~gv~FP~~~~---~~~~L~L~GaGvR~~~I~~~~iKvYa~GlYl~~~~~~~~l-~kwk~~~~~eL~~~~~f~~~   77 (208)
T 4dok_A            2 TGMVMVHEVPFPPQII---TSKPLSLLGQGITDIEIHFLQVKFTAIGVYLDPSDVKTHL-DNWKGKTGKELAGDDDFFDA   77 (208)
T ss_dssp             CCCEEETTEEECSEEE---SSSEEEEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHC-GGGTTCCHHHHHTCHHHHHH
T ss_pred             CccEEEccEECCcccc---CCCcceeeeeeeeeEeeeeeEEEEEEEEEEecHHHHHHHH-hhhcCCCHHHHccchHHHHH
Confidence            4689999999999998   678999999999999999999999999999999 455667 89999999999999999999


Q ss_pred             hhcCCcceEEEEEEEecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCCCCCEEEEEEeC--CceEE
Q 027531           86 VVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP--GSLTI  163 (222)
Q Consensus        86 li~~~~~k~iriv~~r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~~l~kG~~i~l~~~p--g~l~v  163 (222)
                      |+++|++|++||+++|++++++|+++|+|+|++|+++.|.+++++.++|++|.++|+++++|||++|+|+|.|  |.|.+
T Consensus        78 ii~~p~eK~iri~~ir~l~g~~~~~a~~e~~~~~~~~~~~~~~~e~~aL~~f~~~F~~~~~~~G~~I~~~~~p~~G~L~i  157 (208)
T 4dok_A           78 LASAEMEKVIRVVVIKEIKGAQYGVQLENTVRDRLAEEDKYEEEEETELEKVVGFFQSKYFKANSVITYHFSAKDGICEI  157 (208)
T ss_dssp             HHHSSSCEEEEEEESSCEEHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHTCEECTTCEEEEEECSSSCCEEE
T ss_pred             HhcCcccceEEEEEEecCCcHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCeEEE
Confidence            9999999999999999999999999999999999999998899999999999999999899999999999996  57899


Q ss_pred             EEeeCCCCCccceeeecCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHc
Q 027531          164 SFSKDGSIPKDGVAVIESNLLSEAVLESMI-GKNGVSPAAKKSLAERISALLN  215 (222)
Q Consensus       164 ~~~~~g~~~~~~~g~I~~~~~~~aL~~~yL-G~~Pvs~~lK~s~~~~l~~ll~  215 (222)
                      +|+.||+  .+..++|+|+.||+|||++|| |++||||+||++++++|++||.
T Consensus       158 ~~s~~G~--~~~~~~I~~~~l~~All~~yl~G~~pvsp~lK~sla~~l~~ll~  208 (208)
T 4dok_A          158 GFETEGK--EEEKLKVENANVVGMMQRWYLSGSRGVSPSTIVSIADSISAVLT  208 (208)
T ss_dssp             EEECTTS--CCEEEEECCHHHHHHHHHHHSCTTTCSCHHHHHHHHHHHHHHHC
T ss_pred             EEEeCCE--eccccccCCHHHHHHHHHHeeCCCCCCCHHHHHHHHHHHHHhhC
Confidence            9988886  234568999999999999999 9999999999999999999983

>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana}

Probab=100.00  E-value=2.9e-51  Score=348.20  Aligned_cols=198  Identities=26%  Similarity=0.415  Sum_probs=185.3

Q ss_pred             eeceecCCcccCCCCCCceeeeeeeeeeeeEcCeeEEEEEEEEeecCCCCchhhhcccCCChhhhhcchHHHHHhhcCCc
Q 027531           12 VENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPF   91 (222)
Q Consensus        12 v~gv~FP~~i~~~~~~~~L~L~GaGvR~k~i~~~~~kVYa~GlY~~~~~~~~l~~~~~g~~~~~l~~~~~~~~~li~~~~   91 (222)
                      +|||+||+++++|+++++|+|||+|+|+|.|.|++||||++|||++++..++|+ +|+|+++++|.++.+||++|+++|+
T Consensus        18 ~tgv~fp~~~~~~~~~~~l~L~G~GvR~~~i~~~~ikvYa~glYl~~~~~~~L~-~~~~~~~~el~~~~~~~~~il~~~~   96 (217)
T 4dol_A           18 ATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVNESILSGLS-AWTGRSADEIQRDSSLFVSIFQAQA   96 (217)
T ss_dssp             TTCCEEESEECCTTCSSCEEEEEEEEEEEESSSSEEEEEEEEEEECGGGTGGGG-GGTTCCHHHHHTCHHHHHHHHHSSS
T ss_pred             CCCccCCCcccCCCCCCceEEEEEEEEEEEEeeeEEEEEEEEEEcCHHHHHHHH-hhcCCCHHHHcccHHHHHHHHcCCC
Confidence            889999999999876799999999999999999999999999999999989997 9999999999999999999999999


Q ss_pred             ceEEEEEEEecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCCCCCEEEEEEeC-CceEEEEeeCCC
Q 027531           92 EKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGS  170 (222)
Q Consensus        92 ~k~iriv~~r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~~l~kG~~i~l~~~p-g~l~v~~~~~g~  170 (222)
                      +|++||+++|++++++|++|+.|+|++|++..+   .++.++|++|.++|++++++|||+|+|+|.| |++.+++..+| 
T Consensus        97 ~k~lri~~~R~i~~~~l~~a~~e~i~~~~~~~~---~~~~~~l~~f~~~F~d~~v~kGd~i~~~~~p~~~l~i~~~~~g-  172 (217)
T 4dol_A           97 EKSLQIVLVRDVDGKTFWDALDEAISPRIKSPS---SEDTTALSTFCCIFQNRPLNKGSVILLTWINTSNMLVSVSSGG-  172 (217)
T ss_dssp             CEEEEEEESSCBCHHHHHHHHHHHHTTTCSSCC---HHHHHHHHHHHHHHTTCCBCTTCEEEEEEEETTEEEEEEESSS-
T ss_pred             ceEEEEEEEecCCHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHhCCCcCCCCCEEEEEEcCCCCEEEEEeCCC-
Confidence            999999999999999999999999999986543   3678899999999998899999999999999 68899887556 


Q ss_pred             CCccceeeecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 027531          171 IPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALL  214 (222)
Q Consensus       171 ~~~~~~g~I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll  214 (222)
                      .+.+..|+|+++.|++|+|++|||++|+||+||++++++|++||
T Consensus       173 ~~~~~~g~I~~~~f~~A~~~iwLG~~p~sp~lk~~L~~~l~~l~  216 (217)
T 4dol_A          173 LPTNVDATIESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL  216 (217)
T ss_dssp             CCCSCCEEEECHHHHHHHHHHHHSSSCSCHHHHHHHHHHHHHHC
T ss_pred             ccccceeEeCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhh
Confidence            45577899999999999999999999999999999999999996

>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}

Probab=100.00  E-value=1.8e-47  Score=322.42  Aligned_cols=190  Identities=25%  Similarity=0.417  Sum_probs=173.3

Q ss_pred             eeceecCCcccCCCCCCceeeeeeeeeeeeEcCe-eEEEEEEEEeecCCCCc-hhhhcccCCChhhhhcchHHHHHhhcC
Q 027531           12 VENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGK-FVKFTAIGVYLEDDAVP-LLAGKWKGKTAEELTESVEFFRDVVTG   89 (222)
Q Consensus        12 v~gv~FP~~i~~~~~~~~L~L~GaGvR~k~i~~~-~~kVYa~GlY~~~~~~~-~l~~~~~g~~~~~l~~~~~~~~~li~~   89 (222)
                      .|||+||++++.     .++|+|+|+|+|+|.++ +||||++|+|+++++.+ +|+.+|+|++++||.++.+||++|+++
T Consensus         9 ~tgv~FP~~~~~-----~~~L~G~GvR~~~i~~~~~ikvYa~GlYl~~~~~~~~L~~k~~~~~~~el~~~~~~~~~il~~   83 (205)
T 4doo_A            9 KTGFSFPASIGD-----SRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLMEA   83 (205)
T ss_dssp             TTCCEECSEETT-----TEEEEEEEEEEEECSTTCEEEEEEEEEEEEHHHHHHHHHHHSTTCCHHHHHTCTTHHHHHHHS
T ss_pred             CcCCcCCCccCC-----CceEEEeeeeEEEEeeccceEEEEEEEEeCHHHHHHHHHhhhcCCCHHHHcccHHHHHHHHcC
Confidence            689999999984     47999999999998764 89999999999998654 788999999999999999999999999


Q ss_pred             CcceEEEEEEEe-cCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCC-CCCCCCEEEEEEeC-CceEEEEe
Q 027531           90 PFEKFMKVTMIL-PLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDE-IFPPGSSILFTQSP-GSLTISFS  166 (222)
Q Consensus        90 ~~~k~iriv~~r-~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~-~l~kG~~i~l~~~p-g~l~v~~~  166 (222)
                      |++|++||+++| ++++++|++++.+++++|++..+  .+++.++|++|.++|++. +++||++|+|+|.| |++.+++ 
T Consensus        84 ~~~k~iri~~~~~~i~~~~~~da~~~~i~~~~~~~~--~~~~~~~l~~f~~~F~~~~~~~kGd~i~~~~~p~~~l~~~~-  160 (205)
T 4doo_A           84 DIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFG--GSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAI-  160 (205)
T ss_dssp             CCCEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHS--CSCCHHHHHHHHGGGTTCCCCCTTCEEEEEEETTTEEEEEE-
T ss_pred             CCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccCCCCCCCCEEEEEEcCCCcEEEEE-
Confidence            999999999997 79999999999999999997754  455789999999999854 79999999999999 6788775 


Q ss_pred             eCCCCCccceeeecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 027531          167 KDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALL  214 (222)
Q Consensus       167 ~~g~~~~~~~g~I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll  214 (222)
                       ||    +..|+|+++.|++|+|++|||++|+||+||++++++|++|.
T Consensus       161 -~g----~~~g~I~~~~f~~al~~iwLG~~pvsp~lk~~l~~~l~~l~  203 (205)
T 4doo_A          161 -EG----NHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAASLA  203 (205)
T ss_dssp             -TT----EEEEEEECHHHHHHHHHHHHSSSCSCHHHHHHHHHHHHHHT
T ss_pred             -CC----eeeEEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence             45    57999999999999999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d1eyqa_	212	d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicag	7e-80

>d1eyqa_ d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Chalcone isomerase
superfamily: Chalcone isomerase
family: Chalcone isomerase
domain: Chalcone isomerase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  236 bits (602), Expect = 7e-80
 Identities = 118/211 (55%), Positives = 156/211 (73%), Gaps = 1/211 (0%)

Query: 6   SVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLA 65
           S+T + VEN+ +   V  P + KS+FLGGAGERGL IEG F+KFTAIGVYLED AV  LA
Sbjct: 1   SITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLA 60

Query: 66  GKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGI 125
            KWKGK++EEL E+++F+RD+++GPFEK ++ + I  L+G +YS KV ENC+A  K  G 
Sbjct: 61  AKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGT 120

Query: 126 YTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLL 184
           Y DAEA+A++KF E FK   FPPG+S+ + QSP G L +SFS D SIP+   A+IE+  +
Sbjct: 121 YGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAV 180

Query: 185 SEAVLESMIGKNGVSPAAKKSLAERISALLN 215
           S AVLE+MIG++ VSP  K+ LA R+ ALLN
Sbjct: 181 SSAVLETMIGEHAVSPDLKRCLAARLPALLN 211

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d1eyqa_	212	Chalcone isomerase {Alfalfa (Medicago sativa) [Tax	100.0

>d1eyqa_ d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a+b)
fold: Chalcone isomerase
superfamily: Chalcone isomerase
family: Chalcone isomerase
domain: Chalcone isomerase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=8.3e-58  Score=385.34  Aligned_cols=211  Identities=56%  Similarity=0.917  Sum_probs=202.8

Q ss_pred             CcceEEeeceecCCcccCCCCCCceeeeeeeeeeeeEcCeeEEEEEEEEeecCCCCchhhhcccCCChhhhhcchHHHHH
Q 027531            6 SVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRD   85 (222)
Q Consensus         6 ~~~~~~v~gv~FP~~i~~~~~~~~L~L~GaGvR~k~i~~~~~kVYa~GlY~~~~~~~~l~~~~~g~~~~~l~~~~~~~~~   85 (222)
                      +..+++|+||+||+++++|+++++|+|||+|+|+|+|.|++||||++|||+++++.+.|+.+|+|++++||.+|++||++
T Consensus         1 ~~~~v~v~~v~fP~~i~~~~~~~~l~L~G~GvR~~~i~~~~ikvYa~GlYl~~~~~~~l~~~~~~k~~~el~~~~~~~~~   80 (212)
T d1eyqa_           1 SITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRD   80 (212)
T ss_dssp             CCCCEEETTEEECSEEECTTTCCEEEEEEEEEEEEEETTEEEEEEEEEEEEETTHHHHHHHHHTTCCHHHHHTCHHHHHH
T ss_pred             CcceEEECCccCCCcccCCCCCCceEEeeeEEeeEEEeeeEEEEEEEEEEcccchhHHHhhhhcccchhhhhccHHHHHH
Confidence            45789999999999999998789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCcceEEEEEEEecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCCCCCEEEEEEeC-CceEEE
Q 027531           86 VVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTIS  164 (222)
Q Consensus        86 li~~~~~k~iriv~~r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~~l~kG~~i~l~~~p-g~l~v~  164 (222)
                      |++++++|++||+++|++++++|++||++++++|+++.+.+++++.++|++|+++|++++++||++|+|+|.| |++.++
T Consensus        81 il~~~~~k~iriv~vr~v~~~~l~dal~e~l~~r~~~~~~~~~~~~~~l~~f~~~F~~~~~~kG~~i~~~~~p~g~l~vs  160 (212)
T d1eyqa_          81 IISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLS  160 (212)
T ss_dssp             HHHCSSCEEEEEEESSCEEHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCEECTTCEEEEEEETTTEEEEE
T ss_pred             HhcCCcceEEEEEEEecCCHHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhcCCccCCCCEEEEEECCCCcEEEE
Confidence            9999999999999999999999999999999999999888888899999999999998899999999999999 799999


Q ss_pred             EeeCCCCCccceeeecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcc
Q 027531          165 FSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNV  216 (222)
Q Consensus       165 ~~~~g~~~~~~~g~I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll~~  216 (222)
                      |..+++++++.+|+|+++.||+|||++|||++||||+||++++++|++||++
T Consensus       161 ~~~~~~~~~~~~g~I~~~~~~~al~~~yLGd~Pvs~~lK~s~~~~l~~l~~~  212 (212)
T d1eyqa_         161 FSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLNE  212 (212)
T ss_dssp             EESSSSCCSSCSEEEECHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHC
T ss_pred             EecCCCCCceeeEEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhcC
Confidence            9988888899999999999999999999999999999999999999999974