Citrus Sinensis ID: 027539

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMEDEQSWNEDHILRLQWLRTFLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTEVLIQRDI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcEEccccccccccccccccccccccccEEccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHcHccHHHHHHHHHHHHHHcccccccccHcHHHHHHHHHHHHHHccEEEEccccccccccccHHHHEEEccEEEcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHcHEEEEEccHHHHccccc
Coil and Loop (DISEMBL)
MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFgccemedeqswnEDHILRLQWLRTFLgrrfgwslKDEFQHLRKISILRGLChkvglelvprdydmdcpnpftrddivsmvpvckhvgctsadgrtlLESSKialdkgkledaVNYGTKALARMIAVcgpyhrttaSTYSLLAVVLYHtgdfnqvrqSSVVFQcqlgdskssiIITSFCTEVLIQRDI
Flexible Loop (DISEMBL)
MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMEDEQSWNEDHILRLQWLRTFLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGctsadgrtllesskialdkgkledAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQlgdskssiiitsfctevliqrdi
Low Complexity Region (SEG)
MVTQAFKHVLNGVIASVDYlsdlsaaiasslNFLFGCCEMEDEQSWNEDHILRLQWLRTFLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTEVLIQRDI
Disordered region (IsUnstruct)
****AFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMEDEQSWNEDHILRLQWLRTFLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTEVLI****
Disordered Region (DISOPRED)
MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEM************RLQWLRTFLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTEVLIQRDI
Disordered Region (DISEMBL)
MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMEDEQSWNEDHILRLQWLRTFLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTEVLIQRDI
Disordered Region (DISPRO)
MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMEDEQSWNEDHILRLQWLRTFLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTEVLIQR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMEDEQSWNEDHILRLQWLRTFLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTEVLIQRDI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
F4J5S1	1407	Clustered mitochondria pr	no	no	0.477	0.075	0.372	1e-16
O15818	1320	Clustered mitochondria pr	yes	no	0.837	0.140	0.272	9e-14
B0W2S0	1377	Clustered mitochondria pr	N/A	no	0.5	0.080	0.309	5e-11
Q0IHW8	1296	Clustered mitochondria pr	yes	no	0.531	0.091	0.308	2e-10
B4MY63	1441	Protein clueless OS=Droso	N/A	no	0.599	0.092	0.278	7e-10
Q17N71	1442	Clustered mitochondria pr	N/A	no	0.545	0.083	0.285	2e-09
B4KT50	1487	Protein clueless OS=Droso	N/A	no	0.599	0.089	0.278	6e-09
Q7PZD5	1463	Clustered mitochondria pr	yes	no	0.545	0.082	0.293	8e-09
B4LQ23	1465	Protein clueless OS=Droso	N/A	no	0.599	0.090	0.278	8e-09
B4JW99	1494	Protein clueless OS=Droso	N/A	no	0.590	0.087	0.275	9e-09

>sp|F4J5S1|CLU_ARATH Clustered mitochondria protein OS=Arabidopsis thaliana GN=FMT PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 63/110 (57%)

Query: 77   RKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSK 136
            +K+S+LR LC KVG+ +  R YD     PF   DI+ + PV KH     ++ + L+E  K
Sbjct: 974  KKVSVLRNLCQKVGVSIAARKYDFSANTPFETSDILDLRPVIKHSVPVCSEAKDLVEMGK 1033

Query: 137  IALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDF 186
            + L +G L ++  + ++A + +  V GP HR  A+    LA+VLYH GD 
Sbjct: 1034 VQLAEGMLSESYTFFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM 1083

Involved in proper cytoplasmic distribution of mitochondria.
Arabidopsis thaliana (taxid: 3702)

>sp|O15818|CLU_DICDI Clustered mitochondria protein homolog OS=Dictyostelium discoideum GN=clua PE=1 SV=2

 Score = 77.0 bits (188), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 16/202 (7%)

Query: 1    MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGC---CEMEDEQSWNEDHILRLQ-- 55
            MV++A KH  N ++ S +  SD++ +I+  LN   G        DE+S     I      
Sbjct: 814  MVSRAAKHCFNRLLRSTN-ASDMAHSISHFLNCFLGTETGSVSADEKSKKAKQIKSSAIN 872

Query: 56   -------W--LRTFLGRRFGWSLKDEFQHLR-KISILRGLCHKVGLELVPRDYDMDCPNP 105
                   W  +   +  +F + +      +  ++ +LR +C K+G++++ +DY+     P
Sbjct: 873  ELTQGKLWSEIAQLVSSKFDFEIPTHSVPMESRLIVLRCICLKMGIQILAKDYNFTTDAP 932

Query: 106  FTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPY 165
            F+ +DIV + P+ KHV   S DG  LLE+ K   ++ K E A     +ALA    V GP 
Sbjct: 933  FSPEDIVDLFPIVKHVNPRSTDGLDLLEAGKTFFNQRKYELATELLGEALAIYHQVHGPI 992

Query: 166  HRTTASTYSLLAVVLYHTGDFN 187
            H    + ++ LA++ Y    ++
Sbjct: 993  HPDAGACFTHLAMLAYQNEQYD 1014

Dictyostelium discoideum (taxid: 44689)

>sp|B0W2S0|CLU_CULQU Clustered mitochondria protein homolog OS=Culex quinquefasciatus GN=CPIJ001445 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 2/113 (1%)

Query: 75   HLRKISILRGLCHKVGLELVPRDYDMDCPNP--FTRDDIVSMVPVCKHVGCTSADGRTLL 132
            HL+KIS+LR  C K G++++ R+Y+ +  N   F  +DIV++ PV KH+   ++D     
Sbjct: 967  HLQKISLLRAFCLKTGVQILLREYNFETKNKPTFNENDIVNVFPVVKHINPRASDAYNFY 1026

Query: 133  ESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGD 185
             + +  + +G  +D  +  ++AL  +  V G  H   A    +LA + Y  GD
Sbjct: 1027 TTGQTKIQQGYFKDGYDLISEALNLLNNVYGAMHPENAQCLRMLARLSYIMGD 1079

Culex quinquefasciatus (taxid: 7176)

>sp|Q0IHW8|CLU_XENTR Clustered mitochondria protein homolog OS=Xenopus tropicalis GN=cluh PE=2 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 2/120 (1%)

Query: 72   EFQHLRKISILRGLCHKVGLELVPRDYDMDCPNP--FTRDDIVSMVPVCKHVGCTSADGR 129
            E  +L+KIS+LR +C KVG++++ ++Y+ D  +   FT +DI+++ PV KHV   + D  
Sbjct: 912  EVYNLQKISLLREICIKVGIQILLKEYNFDSKHKPTFTEEDILNIFPVVKHVNPKATDAF 971

Query: 130  TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQV 189
               +S +  + +G L++      +AL     V G  H    +   LLA + Y  GD+++ 
Sbjct: 972  HFFQSGQAKVQQGYLKEGCELINEALNLFNNVYGAMHVEICACLRLLARLNYIMGDYSEA 1031

Xenopus tropicalis (taxid: 8364)

>sp|B4MY63|CLU_DROWI Protein clueless OS=Drosophila willistoni GN=clu PE=3 SV=1

 Score = 63.9 bits (154), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 7/140 (5%)

Query: 76   LRKISILRGLCHKVGLELVPRDYDMDCPNP--FTRDDIVSMVPVCKHVGCTSADGRTLLE 133
            + +IS+LRG C KVG++++ R+Y+ +  +   F  DDIV++ PV KH+   S D      
Sbjct: 1055 ISRISLLRGFCQKVGIQVLLREYNFESKHKPTFGDDDIVNVFPVVKHISPRSTDAYNFYT 1114

Query: 134  SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ---VR 190
            + +  + +G  ++     ++AL  +  V G  H+   S   +LA + Y  GD      ++
Sbjct: 1115 TGQSKIQQGLFKEGYELISEALNLLNNVFGAMHQENGSCLRMLARLSYLLGDAQDALAIQ 1174

Query: 191  QSSVVFQCQLG--DSKSSII 208
            Q +V+   ++   D  S+I+
Sbjct: 1175 QRAVIMSERVNGIDHPSTIL 1194

Drosophila willistoni (taxid: 7260)

>sp|Q17N71|CLU_AEDAE Clustered mitochondria protein homolog OS=Aedes aegypti GN=AAEL000794 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 5/126 (3%)

Query: 76   LRKISILRGLCHKVGLELVPRDYDMDCPNP--FTRDDIVSMVPVCKHVGCTSADGRTLLE 133
            L+KIS+LR  C K G++++ R+Y+ +  N   F   DIV++ PV KH+   ++D      
Sbjct: 1033 LQKISLLRAFCLKTGVQILLREYNFEMKNKPTFGESDIVNVFPVVKHINPRASDAYNFYT 1092

Query: 134  SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ---VR 190
            + +  + +G  +D  +  ++AL  +  V G  H   A    +LA + Y  GD  +   ++
Sbjct: 1093 TGQSKIQQGYFKDGYDLISEALNLLNNVYGAMHPENAQCLRMLARLSYIMGDPQEALAIQ 1152

Query: 191  QSSVVF 196
            Q +V+ 
Sbjct: 1153 QRAVLM 1158

Aedes aegypti (taxid: 7159)

>sp|B4KT50|CLU_DROMO Protein clueless OS=Drosophila mojavensis GN=clu PE=3 SV=1

 Score = 60.8 bits (146), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 7/140 (5%)

Query: 76   LRKISILRGLCHKVGLELVPRDYDMDCPNP--FTRDDIVSMVPVCKHVGCTSADGRTLLE 133
            L +IS+LR  C KVG++++ R+Y+ +  +   F  DDIV++ PV KH+   + D      
Sbjct: 1086 LLRISLLRAFCLKVGIQVLLREYNFESKHKPTFGDDDIVNVFPVVKHISPRATDAYNFYT 1145

Query: 134  SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ---VR 190
            + +  + +G L++     ++AL  +  V G  H+   S   +LA + Y  GD      ++
Sbjct: 1146 TGQAKIQQGLLKEGYELISEALNLLNNVFGAMHQENGSCLRMLARLSYLLGDAQDALAIQ 1205

Query: 191  QSSVVFQCQLG--DSKSSII 208
            Q +V+   ++   D  S+I+
Sbjct: 1206 QRAVIMSERVNGIDHPSTIL 1225

Drosophila mojavensis (taxid: 7230)

>sp|Q7PZD5|CLU_ANOGA Clustered mitochondria protein homolog OS=Anopheles gambiae GN=AGAP011851 PE=3 SV=4

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 5/126 (3%)

Query: 76   LRKISILRGLCHKVGLELVPRDYDMDCPN--PFTRDDIVSMVPVCKHVGCTSADGRTLLE 133
            L+KIS+LR  C K G++++ ++Y  +  N   FT  DIV++ PV KH+   ++D      
Sbjct: 1047 LQKISLLRSFCLKTGVQILLQEYAFEQRNRPAFTDADIVNVFPVVKHINPRASDAYNFYT 1106

Query: 134  SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ---VR 190
            + +  + +G L+D     ++AL  +  V G  H   A    +LA + Y  GD  +   ++
Sbjct: 1107 TGQTKIQQGYLQDGYGLISEALNLLNNVYGAMHPENAQCLRMLARLSYIMGDPQEALAIQ 1166

Query: 191  QSSVVF 196
            Q +V+ 
Sbjct: 1167 QRAVLM 1172

Anopheles gambiae (taxid: 7165)

>sp|B4LQ23|CLU_DROVI Protein clueless OS=Drosophila virilis GN=clu PE=3 SV=1

 Score = 60.5 bits (145), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 7/140 (5%)

Query: 76   LRKISILRGLCHKVGLELVPRDYDMDCPNP--FTRDDIVSMVPVCKHVGCTSADGRTLLE 133
            L +IS+LR  C KVG++++ R+Y+ +  +   F  DDIV++ PV KH+   + D      
Sbjct: 1060 LLRISLLRAFCLKVGIQVLLREYNFESKHKPTFGDDDIVNVFPVVKHISPRATDAYNFYT 1119

Query: 134  SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ---VR 190
            + +  + +G L++     ++AL  +  V G  H+   S   +LA + Y  GD      ++
Sbjct: 1120 TGQAKIQQGMLKEGYELISEALNLLNNVFGAMHQENDSCLRMLARLSYLLGDAQDALAIQ 1179

Query: 191  QSSVVFQCQLG--DSKSSII 208
            Q +V+   ++   D  S+I+
Sbjct: 1180 QRAVIMSERVNGIDHPSTIL 1199

Drosophila virilis (taxid: 7244)

>sp|B4JW99|CLU_DROGR Protein clueless OS=Drosophila grimshawi GN=clu PE=3 SV=1

 Score = 60.5 bits (145), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 7/138 (5%)

Query: 78   KISILRGLCHKVGLELVPRDYDMDCPNP--FTRDDIVSMVPVCKHVGCTSADGRTLLESS 135
            +IS+LR  C KVG++++ R+Y+ +  +   F  DDIV++ PV KH+   + D      + 
Sbjct: 1086 RISLLRAFCLKVGIQVLLREYNFESKHKPTFGDDDIVNVFPVVKHISPRATDAYNFYTTG 1145

Query: 136  KIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ---VRQS 192
            +  + +G L++     ++AL  +  V G  H+   S   +LA + Y  GD      ++Q 
Sbjct: 1146 QAKIQQGLLKEGYELISEALNLLNNVFGAMHQENGSCLRMLARLSYLLGDAGDALAIQQR 1205

Query: 193  SVVFQCQLG--DSKSSII 208
            +V+   ++   D  S+I+
Sbjct: 1206 AVIMSERVNGIDHPSTIL 1223

Drosophila grimshawi (taxid: 7222)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
359482723	1702	PREDICTED: protein KIAA0664 homolog [Vit	0.851	0.111	0.8	1e-89
147802928	1658	hypothetical protein VITISV_010381 [Viti	0.851	0.113	0.8	1e-89
297743499	1262	unnamed protein product [Vitis vinifera]	0.851	0.149	0.8	7e-89
255553265	1454	eukaryotic translation initiation factor	0.851	0.129	0.784	3e-86
356528968	1640	PREDICTED: uncharacterized protein LOC10	0.851	0.115	0.738	1e-81
357468145	1663	Tetratricopeptide-like helical domain-co	0.851	0.113	0.726	2e-81
357468149	1158	Tetratricopeptide-like helical domain-co	0.851	0.163	0.726	1e-80
357468147	1120	Tetratricopeptide-like helical domain-co	0.851	0.168	0.726	1e-80
356522331	1676	PREDICTED: protein TIF31 homolog [Glycin	0.851	0.112	0.732	1e-80
449436621	1689	PREDICTED: clustered mitochondria protei	0.851	0.111	0.75	4e-80

>gi|359482723|ref|XP_003632816.1| PREDICTED: protein KIAA0664 homolog [Vitis vinifera]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 152/190 (80%), Positives = 172/190 (90%), Gaps = 1/190 (0%)

Query: 1   MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMED-EQSWNEDHILRLQWLRT 59
           MVT+AFKHVL  V+ SV+ ++DL AAIASSLNFL GCC MED +Q+   +++++LQWL+T
Sbjct: 743 MVTRAFKHVLKAVVRSVENVADLPAAIASSLNFLLGCCTMEDSDQNSRHENVVKLQWLKT 802

Query: 60  FLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCK 119
           FL RRFGW+LKDEF+HLRK SILRGLC KVGLELVPRDYDM+CPNPF + DI+SMVPVCK
Sbjct: 803 FLTRRFGWTLKDEFKHLRKFSILRGLCQKVGLELVPRDYDMECPNPFRKHDIISMVPVCK 862

Query: 120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVV 179
           HVGC+SADGRTLLESSKIALDKGKLEDAVNYGTKALA+MIAVCGPYHRTTAS YSLLAVV
Sbjct: 863 HVGCSSADGRTLLESSKIALDKGKLEDAVNYGTKALAKMIAVCGPYHRTTASAYSLLAVV 922

Query: 180 LYHTGDFNQV 189
           LYHTGDFNQ 
Sbjct: 923 LYHTGDFNQA 932

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802928|emb|CAN72877.1| hypothetical protein VITISV_010381 [Vitis vinifera]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 152/190 (80%), Positives = 172/190 (90%), Gaps = 1/190 (0%)

Query: 1   MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMED-EQSWNEDHILRLQWLRT 59
           MVT+AFKHVL  V+ SV+ ++DL AAIASSLNFL GCC MED +Q+   +++++LQWL+T
Sbjct: 699 MVTRAFKHVLKAVVRSVENVADLPAAIASSLNFLLGCCTMEDSDQNSRHENVVKLQWLKT 758

Query: 60  FLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCK 119
           FL RRFGW+LKDEF+HLRK SILRGLC KVGLELVPRDYDM+CPNPF + DI+SMVPVCK
Sbjct: 759 FLTRRFGWTLKDEFKHLRKFSILRGLCQKVGLELVPRDYDMECPNPFRKHDIISMVPVCK 818

Query: 120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVV 179
           HVGC+SADGRTLLESSKIALDKGKLEDAVNYGTKALA+MIAVCGPYHRTTAS YSLLAVV
Sbjct: 819 HVGCSSADGRTLLESSKIALDKGKLEDAVNYGTKALAKMIAVCGPYHRTTASAYSLLAVV 878

Query: 180 LYHTGDFNQV 189
           LYHTGDFNQ 
Sbjct: 879 LYHTGDFNQA 888

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743499|emb|CBI36366.3| unnamed protein product [Vitis vinifera]

 Score =  332 bits (851), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 152/190 (80%), Positives = 172/190 (90%), Gaps = 1/190 (0%)

Query: 1   MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMED-EQSWNEDHILRLQWLRT 59
           MVT+AFKHVL  V+ SV+ ++DL AAIASSLNFL GCC MED +Q+   +++++LQWL+T
Sbjct: 743 MVTRAFKHVLKAVVRSVENVADLPAAIASSLNFLLGCCTMEDSDQNSRHENVVKLQWLKT 802

Query: 60  FLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCK 119
           FL RRFGW+LKDEF+HLRK SILRGLC KVGLELVPRDYDM+CPNPF + DI+SMVPVCK
Sbjct: 803 FLTRRFGWTLKDEFKHLRKFSILRGLCQKVGLELVPRDYDMECPNPFRKHDIISMVPVCK 862

Query: 120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVV 179
           HVGC+SADGRTLLESSKIALDKGKLEDAVNYGTKALA+MIAVCGPYHRTTAS YSLLAVV
Sbjct: 863 HVGCSSADGRTLLESSKIALDKGKLEDAVNYGTKALAKMIAVCGPYHRTTASAYSLLAVV 922

Query: 180 LYHTGDFNQV 189
           LYHTGDFNQ 
Sbjct: 923 LYHTGDFNQA 932

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553265|ref|XP_002517675.1| eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] gi|223543307|gb|EEF44839.1| eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 149/190 (78%), Positives = 169/190 (88%), Gaps = 1/190 (0%)

Query: 1   MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMED-EQSWNEDHILRLQWLRT 59
           MVT+AFKH++N VIASVD +++LSAAIASSLNFL G   MED +Q+  +DH L+L WL T
Sbjct: 532 MVTRAFKHIINAVIASVDNVAELSAAIASSLNFLLGSYSMEDNDQNVKDDHGLKLHWLST 591

Query: 60  FLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCK 119
           FL RRFGW++KDEF  LRK+SILRGLCHKVGLEL+PRDYDMDCPNPF + DI+ +VPVCK
Sbjct: 592 FLSRRFGWTIKDEFLQLRKLSILRGLCHKVGLELIPRDYDMDCPNPFRKSDIIGIVPVCK 651

Query: 120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVV 179
           HVGC+SADGRTLLESSKIALDKGKLEDAV+YGTKALA+MIAVCGP HRTTAS YSLLAVV
Sbjct: 652 HVGCSSADGRTLLESSKIALDKGKLEDAVSYGTKALAKMIAVCGPCHRTTASAYSLLAVV 711

Query: 180 LYHTGDFNQV 189
           LYHTGDFNQ 
Sbjct: 712 LYHTGDFNQA 721

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528968|ref|XP_003533069.1| PREDICTED: uncharacterized protein LOC100801625 [Glycine max]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 141/191 (73%), Positives = 163/191 (85%), Gaps = 2/191 (1%)

Query: 1   MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMED--EQSWNEDHILRLQWLR 58
           M+T+AFKH+L  VIASV+ ++DLS+AIAS+LNFL G    ED  +QS ++DH LR+QWL 
Sbjct: 691 MITRAFKHLLKAVIASVENVADLSSAIASTLNFLLGGSRTEDTSDQSLSDDHNLRIQWLH 750

Query: 59  TFLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVC 118
            FL +RFGW+L DEFQHLRK+SILRGLCHKVGLEL PRDYDM+   PF  +DI+S+VPVC
Sbjct: 751 LFLSKRFGWTLNDEFQHLRKLSILRGLCHKVGLELFPRDYDMESSKPFGENDIISLVPVC 810

Query: 119 KHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAV 178
           KHVGC+S DGR LLESSKIALDKGKLEDAV YGTKALA+M+AVCGPYHR TAS YSLLAV
Sbjct: 811 KHVGCSSIDGRNLLESSKIALDKGKLEDAVTYGTKALAKMMAVCGPYHRNTASAYSLLAV 870

Query: 179 VLYHTGDFNQV 189
           VLYHTGDFNQ 
Sbjct: 871 VLYHTGDFNQA 881

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468145|ref|XP_003604357.1| Tetratricopeptide-like helical domain-containing protein [Medicago truncatula] gi|355505412|gb|AES86554.1| Tetratricopeptide-like helical domain-containing protein [Medicago truncatula]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 138/190 (72%), Positives = 161/190 (84%), Gaps = 1/190 (0%)

Query: 1   MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMED-EQSWNEDHILRLQWLRT 59
           M+T+AFKH+   VIASVD  +DL + IA +LNFL G C+ ED +Q+  +DH L++ WLR 
Sbjct: 739 MITRAFKHLFKAVIASVDNAADLPSVIALTLNFLLGGCQTEDTDQTLGDDHHLKIHWLRM 798

Query: 60  FLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCK 119
           FL +RFGW+LKDEFQHLRK+SILRGLCHKVGLEL PRDYDM+ P PF + DI+S+VPVCK
Sbjct: 799 FLSKRFGWTLKDEFQHLRKLSILRGLCHKVGLELFPRDYDMESPKPFGKFDIISLVPVCK 858

Query: 120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVV 179
           HVGC+S DGR LLESSKIALDKGKLEDAV+YGTKALA+M+ VCGPYHR TAS YSLLAVV
Sbjct: 859 HVGCSSIDGRNLLESSKIALDKGKLEDAVSYGTKALAKMMTVCGPYHRNTASAYSLLAVV 918

Query: 180 LYHTGDFNQV 189
           LYHTGDFNQ 
Sbjct: 919 LYHTGDFNQA 928

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468149|ref|XP_003604359.1| Tetratricopeptide-like helical domain-containing protein [Medicago truncatula] gi|355505414|gb|AES86556.1| Tetratricopeptide-like helical domain-containing protein [Medicago truncatula]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 138/190 (72%), Positives = 161/190 (84%), Gaps = 1/190 (0%)

Query: 1   MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMED-EQSWNEDHILRLQWLRT 59
           M+T+AFKH+   VIASVD  +DL + IA +LNFL G C+ ED +Q+  +DH L++ WLR 
Sbjct: 739 MITRAFKHLFKAVIASVDNAADLPSVIALTLNFLLGGCQTEDTDQTLGDDHHLKIHWLRM 798

Query: 60  FLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCK 119
           FL +RFGW+LKDEFQHLRK+SILRGLCHKVGLEL PRDYDM+ P PF + DI+S+VPVCK
Sbjct: 799 FLSKRFGWTLKDEFQHLRKLSILRGLCHKVGLELFPRDYDMESPKPFGKFDIISLVPVCK 858

Query: 120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVV 179
           HVGC+S DGR LLESSKIALDKGKLEDAV+YGTKALA+M+ VCGPYHR TAS YSLLAVV
Sbjct: 859 HVGCSSIDGRNLLESSKIALDKGKLEDAVSYGTKALAKMMTVCGPYHRNTASAYSLLAVV 918

Query: 180 LYHTGDFNQV 189
           LYHTGDFNQ 
Sbjct: 919 LYHTGDFNQA 928

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468147|ref|XP_003604358.1| Tetratricopeptide-like helical domain-containing protein [Medicago truncatula] gi|355505413|gb|AES86555.1| Tetratricopeptide-like helical domain-containing protein [Medicago truncatula]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 138/190 (72%), Positives = 161/190 (84%), Gaps = 1/190 (0%)

Query: 1   MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMED-EQSWNEDHILRLQWLRT 59
           M+T+AFKH+   VIASVD  +DL + IA +LNFL G C+ ED +Q+  +DH L++ WLR 
Sbjct: 739 MITRAFKHLFKAVIASVDNAADLPSVIALTLNFLLGGCQTEDTDQTLGDDHHLKIHWLRM 798

Query: 60  FLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCK 119
           FL +RFGW+LKDEFQHLRK+SILRGLCHKVGLEL PRDYDM+ P PF + DI+S+VPVCK
Sbjct: 799 FLSKRFGWTLKDEFQHLRKLSILRGLCHKVGLELFPRDYDMESPKPFGKFDIISLVPVCK 858

Query: 120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVV 179
           HVGC+S DGR LLESSKIALDKGKLEDAV+YGTKALA+M+ VCGPYHR TAS YSLLAVV
Sbjct: 859 HVGCSSIDGRNLLESSKIALDKGKLEDAVSYGTKALAKMMTVCGPYHRNTASAYSLLAVV 918

Query: 180 LYHTGDFNQV 189
           LYHTGDFNQ 
Sbjct: 919 LYHTGDFNQA 928

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522331|ref|XP_003529800.1| PREDICTED: protein TIF31 homolog [Glycine max]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 140/191 (73%), Positives = 162/191 (84%), Gaps = 2/191 (1%)

Query: 1   MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMED--EQSWNEDHILRLQWLR 58
           M+T+AFKH+L  V ASVD ++DLSAAIAS+LNFL G    ED  +Q   +DH LR+QWL 
Sbjct: 727 MITRAFKHLLKAVTASVDNVADLSAAIASTLNFLLGGSRTEDGADQILIDDHNLRIQWLH 786

Query: 59  TFLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVC 118
            FL +RFGW+L DEFQHLRK+SILRGLCHKVGLEL PRDYDM+   PF ++DI+S+VPVC
Sbjct: 787 LFLSKRFGWTLNDEFQHLRKLSILRGLCHKVGLELFPRDYDMESSKPFGKNDIISLVPVC 846

Query: 119 KHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAV 178
           KHVGC+S DGR LLESSKIALDKGKLEDAVNYGTKALA+M+AVCGP+H+ TAS YSLLAV
Sbjct: 847 KHVGCSSLDGRNLLESSKIALDKGKLEDAVNYGTKALAKMMAVCGPFHQNTASAYSLLAV 906

Query: 179 VLYHTGDFNQV 189
           VLYHTGDFNQ 
Sbjct: 907 VLYHTGDFNQA 917

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436621|ref|XP_004136091.1| PREDICTED: clustered mitochondria protein homolog [Cucumis sativus]

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 144/192 (75%), Positives = 166/192 (86%), Gaps = 3/192 (1%)

Query: 1   MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFL---FGCCEMEDEQSWNEDHILRLQWL 57
           MV +AFKHV+  VIA+V+  +DLSAAIASSLNFL   +G  + E+  + NED  LRLQWL
Sbjct: 737 MVIRAFKHVIKAVIAAVENTADLSAAIASSLNFLLGSYGSEDDENNNNVNEDGALRLQWL 796

Query: 58  RTFLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPV 117
           RTFL +RF W L +EF HLRK+SILRG+CHKVGLEL PRD+D++CPNPF R+D+VS+VPV
Sbjct: 797 RTFLSKRFKWRLSNEFPHLRKLSILRGICHKVGLELAPRDFDLECPNPFRRNDVVSVVPV 856

Query: 118 CKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLA 177
           CKHVGCTSADGR LLESSK+ALDKGKL+DAVNYGTKALA+MIAVCGPYHRTTAS YSLLA
Sbjct: 857 CKHVGCTSADGRNLLESSKVALDKGKLDDAVNYGTKALAKMIAVCGPYHRTTASAYSLLA 916

Query: 178 VVLYHTGDFNQV 189
           VVLYHTGDFNQ 
Sbjct: 917 VVLYHTGDFNQA 928

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2037783	1608	AT1G15290 [Arabidopsis thalian	0.846	0.116	0.656	2.1e-62
TAIR|locus:2035327	1797	AT1G01320 [Arabidopsis thalian	0.842	0.104	0.537	6.5e-48
DICTYBASE|DDB_G0292806	1320	cluA "CluA protein" [Dictyoste	0.495	0.083	0.327	1.6e-12
ZFIN|ZDB-GENE-030131-9913	1357	si:ch211-166a6.5 "si:ch211-166	0.490	0.080	0.351	5e-11
UNIPROTKB|B4MY63	1441	clu "Protein clueless" [Drosop	0.599	0.092	0.285	8e-10
UNIPROTKB|B4KT50	1487	clu "Protein clueless" [Drosop	0.599	0.089	0.285	2.2e-08
UNIPROTKB|B4LQ23	1465	clu "Protein clueless" [Drosop	0.599	0.090	0.285	3.6e-08
UNIPROTKB|B4JW99	1494	clu "Protein clueless" [Drosop	0.590	0.087	0.282	5.3e-08
UNIPROTKB|B4GAM1	1435	clu "Protein clueless" [Drosop	0.599	0.092	0.271	7.2e-08
UNIPROTKB|Q291J5	1435	clu "Protein clueless" [Drosop	0.599	0.092	0.271	7.2e-08

TAIR|locus:2037783 AT1G15290 [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 2.1e-62, P = 2.1e-62
 Identities = 124/189 (65%), Positives = 145/189 (76%)

Query:     1 MVTQAFKHVLNGVIASVDYXXXXXXXXXXXXNFLFGCCEMED-EQSWNEDHILRLQWLRT 59
             M+T+AFKH+L  VIASV+             NF+ G  E+E  ++   E++ LRLQWL+ 
Sbjct:   720 MITRAFKHLLRAVIASVNNMAELPVAVAASLNFMLGRRELEGCDRIPGEEYCLRLQWLQK 779

Query:    60 FLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCK 119
             FL R+FGW  KDEF HL+K SILRGLC KVGLELV RD+D D PNPF   DI+ +VPVCK
Sbjct:   780 FLSRKFGWIQKDEFHHLKKFSILRGLCQKVGLELVSRDFDFDSPNPFMSSDIIGLVPVCK 839

Query:   120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVV 179
             HV C S+DGRTLLESSK+ALDKGKL+DAV+YGTKAL +MIAVCGPYHR TA  YSLLAVV
Sbjct:   840 HVLCISSDGRTLLESSKLALDKGKLDDAVSYGTKALVKMIAVCGPYHRNTACAYSLLAVV 899

Query:   180 LYHTGDFNQ 188
             LYHTGDFNQ
Sbjct:   900 LYHTGDFNQ 908

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2035327 AT1G01320 [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 6.5e-48, P = 6.5e-48
 Identities = 108/201 (53%), Positives = 131/201 (65%)

Query:     1 MVTQAFKHVLNGVIASVDYXXXXXXXXXXXX-NFLFGCCE---MEDEQSWNEDHILRLQW 56
             M+ +A KH+L  VI++V               N + G  E         WN  H L  +W
Sbjct:   741 MIVRALKHILQAVISAVATDTDKIAIKVAAALNMMLGIPENVAATPHNPWNV-HPLIFRW 799

Query:    57 LRTFLGRRFGWSLKD-EFQHLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMV 115
             L  FL +R+ + L    ++ LRK +ILRGLCHKVG+EL+PRD+DMD P PF + D+VS+V
Sbjct:   800 LEKFLKKRYDYDLNAFSYKDLRKFAILRGLCHKVGIELIPRDFDMDSPAPFRKTDVVSLV 859

Query:   116 PVCK--------HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR 167
             PV K           C+SADGR LLESSK ALDKGKLEDAV YGTKALA+++AVCGPYHR
Sbjct:   860 PVHKTFYFKSMQQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR 919

Query:   168 TTASTYSLLAVVLYHTGDFNQ 188
              TA  YSLLAVVLYHTGDFNQ
Sbjct:   920 MTAGAYSLLAVVLYHTGDFNQ 940

GO:0005737 "cytoplasm" evidence=ISM

GO:0016556 "mRNA modification" evidence=RCA

DICTYBASE|DDB_G0292806 cluA "CluA protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 172 (65.6 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
 Identities = 36/110 (32%), Positives = 62/110 (56%)

Query:    78 KISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKI 137
             ++ +LR +C K+G++++ +DY+     PF+ +DIV + P+ KHV   S DG  LLE+ K 
Sbjct:   905 RLIVLRCICLKMGIQILAKDYNFTTDAPFSPEDIVDLFPIVKHVNPRSTDGLDLLEAGKT 964

Query:   138 ALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFN 187
               ++ K E A     +ALA    V GP H    + ++ LA++ Y    ++
Sbjct:   965 FFNQRKYELATELLGEALAIYHQVHGPIHPDAGACFTHLAMLAYQNEQYD 1014

GO:0048312 "intracellular distribution of mitochondria" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IC

GO:0000281 "cytokinesis after mitosis" evidence=IMP

GO:0008053 "mitochondrial fusion" evidence=IMP

GO:0000266 "mitochondrial fission" evidence=IMP

ZFIN|ZDB-GENE-030131-9913 si:ch211-166a6.5 "si:ch211-166a6.5" [Danio rerio (taxid:7955)]

 Score = 167 (63.8 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 39/111 (35%), Positives = 61/111 (54%)

Query:    76 LRKISILRGLCHKVGLELVPRDYDMDCPN--PFTRDDIVSMVPVCKHVGCTSADGRTLLE 133
             L+K+S+LR +C K G++L  R+Y  D  N  P + DD+++++PV KH+  T++D   +  
Sbjct:   898 LQKMSLLREMCLKTGIQLRLREYAFDSRNKAPISPDDVLNVLPVVKHITMTTSDATRMFM 957

Query:   134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG 184
             +++ +L KG LE A     +A      VC   H       SLLA V Y  G
Sbjct:   958 AAQNSLQKGLLEKAYEQLKEASYLFSRVCDDLHPEACHCLSLLAKVAYVQG 1008

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|B4MY63 clu "Protein clueless" [Drosophila willistoni (taxid:7260)]

 Score = 156 (60.0 bits), Expect = 8.0e-10, P = 8.0e-10
 Identities = 40/140 (28%), Positives = 74/140 (52%)

Query:    76 LRKISILRGLCHKVGLELVPRDYDMDCPN-P-FTRDDIVSMVPVCKHVGCTSADGRTLLE 133
             + +IS+LRG C KVG++++ R+Y+ +  + P F  DDIV++ PV KH+   S D      
Sbjct:  1055 ISRISLLRGFCQKVGIQVLLREYNFESKHKPTFGDDDIVNVFPVVKHISPRSTDAYNFYT 1114

Query:   134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ---VR 190
             + +  + +G  ++     ++AL  +  V G  H+   S   +LA + Y  GD      ++
Sbjct:  1115 TGQSKIQQGLFKEGYELISEALNLLNNVFGAMHQENGSCLRMLARLSYLLGDAQDALAIQ 1174

Query:   191 QSSVVFQCQLG--DSKSSII 208
             Q +V+   ++   D  S+I+
Sbjct:  1175 QRAVIMSERVNGIDHPSTIL 1194

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B4KT50 clu "Protein clueless" [Drosophila mojavensis (taxid:7230)]

 Score = 150 (57.9 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 40/140 (28%), Positives = 74/140 (52%)

Query:    76 LRKISILRGLCHKVGLELVPRDYDMDCPN-P-FTRDDIVSMVPVCKHVGCTSADGRTLLE 133
             L +IS+LR  C KVG++++ R+Y+ +  + P F  DDIV++ PV KH+   + D      
Sbjct:  1086 LLRISLLRAFCLKVGIQVLLREYNFESKHKPTFGDDDIVNVFPVVKHISPRATDAYNFYT 1145

Query:   134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ---VR 190
             + +  + +G L++     ++AL  +  V G  H+   S   +LA + Y  GD      ++
Sbjct:  1146 TGQAKIQQGLLKEGYELISEALNLLNNVFGAMHQENGSCLRMLARLSYLLGDAQDALAIQ 1205

Query:   191 QSSVVFQCQLG--DSKSSII 208
             Q +V+   ++   D  S+I+
Sbjct:  1206 QRAVIMSERVNGIDHPSTIL 1225

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B4LQ23 clu "Protein clueless" [Drosophila virilis (taxid:7244)]

 Score = 149 (57.5 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 40/140 (28%), Positives = 74/140 (52%)

Query:    76 LRKISILRGLCHKVGLELVPRDYDMDCPN-P-FTRDDIVSMVPVCKHVGCTSADGRTLLE 133
             L +IS+LR  C KVG++++ R+Y+ +  + P F  DDIV++ PV KH+   + D      
Sbjct:  1060 LLRISLLRAFCLKVGIQVLLREYNFESKHKPTFGDDDIVNVFPVVKHISPRATDAYNFYT 1119

Query:   134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ---VR 190
             + +  + +G L++     ++AL  +  V G  H+   S   +LA + Y  GD      ++
Sbjct:  1120 TGQAKIQQGMLKEGYELISEALNLLNNVFGAMHQENDSCLRMLARLSYLLGDAQDALAIQ 1179

Query:   191 QSSVVFQCQLG--DSKSSII 208
             Q +V+   ++   D  S+I+
Sbjct:  1180 QRAVIMSERVNGIDHPSTIL 1199

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B4JW99 clu "Protein clueless" [Drosophila grimshawi (taxid:7222)]

 Score = 148 (57.2 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 39/138 (28%), Positives = 73/138 (52%)

Query:    78 KISILRGLCHKVGLELVPRDYDMDCPN-P-FTRDDIVSMVPVCKHVGCTSADGRTLLESS 135
             +IS+LR  C KVG++++ R+Y+ +  + P F  DDIV++ PV KH+   + D      + 
Sbjct:  1086 RISLLRAFCLKVGIQVLLREYNFESKHKPTFGDDDIVNVFPVVKHISPRATDAYNFYTTG 1145

Query:   136 KIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ---VRQS 192
             +  + +G L++     ++AL  +  V G  H+   S   +LA + Y  GD      ++Q 
Sbjct:  1146 QAKIQQGLLKEGYELISEALNLLNNVFGAMHQENGSCLRMLARLSYLLGDAGDALAIQQR 1205

Query:   193 SVVFQCQLG--DSKSSII 208
             +V+   ++   D  S+I+
Sbjct:  1206 AVIMSERVNGIDHPSTIL 1223

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B4GAM1 clu "Protein clueless" [Drosophila persimilis (taxid:7234)]

 Score = 147 (56.8 bits), Expect = 7.2e-08, P = 7.2e-08
 Identities = 38/140 (27%), Positives = 74/140 (52%)

Query:    76 LRKISILRGLCHKVGLELVPRDYDMDCPN-P-FTRDDIVSMVPVCKHVGCTSADGRTLLE 133
             + +I +LR  C KVG++++ R+Y+ D  + P F  DDIV++ PV KH+   ++D      
Sbjct:  1042 IMRICLLRAFCLKVGIQVLLREYNFDSKHKPTFGDDDIVNVFPVVKHISPRASDAYNFYT 1101

Query:   134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ---VR 190
             + +  + +G  ++     ++AL  +  V G  H+   S   +LA + Y  GD      ++
Sbjct:  1102 TGQAKIQQGLFKEGYELISEALNLLNNVFGAMHQENGSCLRMLARLSYLLGDAQDALAIQ 1161

Query:   191 QSSVVFQCQLG--DSKSSII 208
             Q +V+   ++   D+ S+I+
Sbjct:  1162 QRAVIMSERVNGIDNPSTIL 1181

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q291J5 clu "Protein clueless" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 147 (56.8 bits), Expect = 7.2e-08, P = 7.2e-08
 Identities = 38/140 (27%), Positives = 74/140 (52%)

Query:    76 LRKISILRGLCHKVGLELVPRDYDMDCPN-P-FTRDDIVSMVPVCKHVGCTSADGRTLLE 133
             + +I +LR  C KVG++++ R+Y+ D  + P F  DDIV++ PV KH+   ++D      
Sbjct:  1042 IMRICLLRAFCLKVGIQVLLREYNFDSKHKPTFGDDDIVNVFPVVKHISPRASDAYNFYT 1101

Query:   134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ---VR 190
             + +  + +G  ++     ++AL  +  V G  H+   S   +LA + Y  GD      ++
Sbjct:  1102 TGQAKIQQGLFKEGYELISEALNLLNNVFGAMHQENGSCLRMLARLSYLLGDAQDALAIQ 1161

Query:   191 QSSVVFQCQLG--DSKSSII 208
             Q +V+   ++   D+ S+I+
Sbjct:  1162 QRAVIMSERVNGIDNPSTIL 1181

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
pfam12807	169	pfam12807, eIF3_p135, Translation initiation facto	2e-25
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-04

>gnl|CDD|221783 pfam12807, eIF3_p135, Translation initiation factor eIF3 subunit 135

 Score = 97.1 bits (242), Expect = 2e-25
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 22/122 (18%)

Query: 1   MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEM----------------EDEQ 44
           M+ +A KH+L   +  V    DLSAAI+  LN L G                    ED+ 
Sbjct: 49  MIARAAKHILRTYLRGVP-APDLSAAISHFLNCLLGSESNPDPEAEIDESRSASYPEDDF 107

Query: 45  SW-NEDHILRLQWLRTFLGRRFGWSLKDEF----QHLRKISILRGLCHKVGLELVPRDYD 99
           +W           +      RF + LK+++      L+KIS+LR +C KVG++L+ R+YD
Sbjct: 108 AWEKLTPEELWSEIEKEAKDRFRYELKEDWKDEQYGLQKISLLREICLKVGIQLLLREYD 167

Query: 100 MD 101
            D
Sbjct: 168 FD 169

Translation initiation factor eIF3 is a multi-subunit protein complex required for initiation of protein biosynthesis in eukaryotic cells. The complex promotes ribosome dissociation, the binding of the initiator methionyl-tRNA to the 40 S ribosomal subunit, and mRNA recruitment to the ribosome. The protein product from TIF31 genes in yeast is p135 which associates with the eIF3 but does not seem to be necessary for protein translation initiation. Length = 169

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ 188
             L   + +    G  ++A+    KAL  +    G  H  TA   + LA +    GD+++
Sbjct: 6   AALNNLALVLRRLGDYDEALELLEKALE-LARELGEDHPETARALNNLARLYLALGDYDE 64

Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	100.0
PF12807	169	eIF3_p135: Translation initiation factor eIF3 subu	99.96
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.27
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.12
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.43
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.41
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.2
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.95
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	97.94
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.8
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.8
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.6
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.59
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.45
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.39
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.31
PRK15359	144	type III secretion system chaperone protein SscB;	97.22
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.22
KOG0553	304	consensus TPR repeat-containing protein [General f	97.21
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.14
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.1
PF13371	73	TPR_9: Tetratricopeptide repeat	97.02
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.0
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.97
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.96
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.95
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.89
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.84
PRK15359	144	type III secretion system chaperone protein SscB;	96.83
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.81
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.8
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.74
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.72
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.7
PRK11189	296	lipoprotein NlpI; Provisional	96.69
PF12688	120	TPR_5: Tetratrico peptide repeat	96.66
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.64
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.61
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.54
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.5
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.47
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.42
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.42
PRK11189	296	lipoprotein NlpI; Provisional	96.39
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.31
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.27
PRK12370	553	invasion protein regulator; Provisional	96.26
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.11
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.08
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.07
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.0
PRK10803	263	tol-pal system protein YbgF; Provisional	95.9
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	95.85
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	95.62
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.56
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	95.54
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.47
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	95.43
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.41
PF13431	34	TPR_17: Tetratricopeptide repeat	95.4
PRK11788	389	tetratricopeptide repeat protein; Provisional	95.21
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	95.19
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	95.16
PRK04841	903	transcriptional regulator MalT; Provisional	95.14
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	95.14
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.1
PRK10803	263	tol-pal system protein YbgF; Provisional	95.09
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	95.08
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.06
PRK11788	389	tetratricopeptide repeat protein; Provisional	95.0
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.99
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.9
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.78
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	94.56
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.55
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	94.46
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	94.32
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	94.24
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	94.23
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	94.16
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	94.15
PF13512	142	TPR_18: Tetratricopeptide repeat	94.13
PRK12370	553	invasion protein regulator; Provisional	94.05
KOG4555	175	consensus TPR repeat-containing protein [Function	93.98
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	93.86
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	93.74
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	93.65
PF12688	120	TPR_5: Tetratrico peptide repeat	93.6
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	93.43
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.41
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	93.29
KOG2076	895	consensus RNA polymerase III transcription factor	93.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	92.89
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.64
PRK15331	165	chaperone protein SicA; Provisional	92.51
KOG0547	606	consensus Translocase of outer mitochondrial membr	92.32
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	92.07
PF13428	44	TPR_14: Tetratricopeptide repeat	92.03
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	91.99
PRK04841	903	transcriptional regulator MalT; Provisional	91.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	91.8
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	91.55
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	91.35
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	91.15
KOG2076	895	consensus RNA polymerase III transcription factor	91.06
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.87
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	90.69
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	90.55
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	90.51
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	90.47
PF04212	69	MIT: MIT (microtubule interacting and transport) d	90.26
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	90.16
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	90.13
PF09311	181	Rab5-bind: Rabaptin-like protein; InterPro: IPR015	90.11
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.03
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	89.4
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.38
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	89.13
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	88.78
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	88.65
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	88.46
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	88.39
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	88.35
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	88.25
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	87.99
PF03704	146	BTAD: Bacterial transcriptional activator domain;	87.95
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	87.9
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.87
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	87.76
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.74
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	87.63
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	87.61
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	87.56
PRK14574	822	hmsH outer membrane protein; Provisional	87.53
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	87.16
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	87.06
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	86.98
KOG1126	638	consensus DNA-binding cell division cycle control	86.88
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	86.84
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	86.79
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	86.74
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	86.46
KOG4648	536	consensus Uncharacterized conserved protein, conta	86.44
KOG0553	304	consensus TPR repeat-containing protein [General f	86.23
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	86.18
COG4783	484	Putative Zn-dependent protease, contains TPR repea	85.41
cd02656	75	MIT MIT: domain contained within Microtubule Inter	85.17
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	85.06
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.0
KOG2003	840	consensus TPR repeat-containing protein [General f	84.96
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	84.84
KOG0547	606	consensus Translocase of outer mitochondrial membr	84.64
KOG2376	652	consensus Signal recognition particle, subunit Srp	84.64
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	84.6
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	84.29
PF13428	44	TPR_14: Tetratricopeptide repeat	83.47
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	83.21
PF08969	115	USP8_dimer: USP8 dimerisation domain; InterPro: IP	83.14
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	82.45
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	82.34
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	82.14
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	81.63
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	81.59
PRK11906	458	transcriptional regulator; Provisional	81.32
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	80.55
KOG4555	175	consensus TPR repeat-containing protein [Function	80.52
KOG4340	459	consensus Uncharacterized conserved protein [Funct	80.47
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	80.35

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=100.00  E-value=2.6e-34  Score=290.88  Aligned_cols=204  Identities=22%  Similarity=0.244  Sum_probs=185.5

Q ss_pred             CchhhhhHHHHHHhhcCCCCCchHHHHHHHhhhhcCCCCCCC------cccc--c-----------------------ch
Q 027539            1 MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMED------EQSW--N-----------------------ED   49 (222)
Q Consensus         1 mi~RaaKHilr~~l~~~~~~~~~~~~iahfLNcLlg~~~~~~------d~~~--k-----------------------~~   49 (222)
                      +++|++||||+.+++.++. ..+++++||||||+||.-.+..      ++..  +                       ..
T Consensus       765 i~~RslKhvlK~~~r~l~~-~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~  843 (1236)
T KOG1839|consen  765 IALRSLKHVLKDNLRLLGA-DHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLS  843 (1236)
T ss_pred             HHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccc
Confidence            4789999999999999995 8999999999999999754322      1100  1                       12


Q ss_pred             hhhhHHHHHHHhccccccccccccc-------chhhHHHHHHHHHHHceeeeccccCCCC-C--CCCCcCCccccccccc
Q 027539           50 HILRLQWLRTFLGRRFGWSLKDEFQ-------HLRKISILRGLCHKVGLELVPRDYDMDC-P--NPFTRDDIVSMVPVCK  119 (222)
Q Consensus        50 ~~~~~~~i~~~v~~rfry~L~~~~~-------~~~k~~lLR~ic~K~GIQl~~rdY~f~~-~--~~F~~~DI~ni~PvVK  119 (222)
                      .+.+|.||+...+.+|++..+.+..       +.+++++.|..|.|.|||..+|+|+|++ +  ++|..+||+|+.|+||
T Consensus       844 ~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik  923 (1236)
T KOG1839|consen  844 VSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIK  923 (1236)
T ss_pred             hhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccc
Confidence            5678999999999999999986432       6789999999999999999999999998 4  7999999999999999


Q ss_pred             ccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhh
Q 027539          120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQ  199 (222)
Q Consensus       120 ~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~  199 (222)
                      |+.|.++++++.+|+|+..+++|.+.+|++ ..++++++++++|.+||+++.||..||++|+++||+++|+    .+|  
T Consensus       924 ~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai----~~~--  996 (1236)
T KOG1839|consen  924 HSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAI----AQQ--  996 (1236)
T ss_pred             cCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHH----Hhc--
Confidence            999999999999999999999999999999 9999999999999999999999999999999999999999    999  


Q ss_pred             hCCCCceEEEeeeechh
Q 027539          200 LGDSKSSIIITSFCTEV  216 (222)
Q Consensus       200 ~~~~~~a~~i~e~~~~~  216 (222)
                          .+|++|.||+.|.
T Consensus       997 ----~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  997 ----RKACIISERVLGK 1009 (1236)
T ss_pred             ----ccceeeechhccC
Confidence                8999999999875

>PF12807 eIF3_p135: Translation initiation factor eIF3 subunit 135

Probab=99.96  E-value=1.5e-29  Score=210.45  Aligned_cols=100  Identities=31%  Similarity=0.520  Sum_probs=88.8

Q ss_pred             CchhhhhHHHHHHhhcCCCCCchHHHHHHHhhhhcCCCCCCCcc-----c------------ccchhhhhHHHHHHHhcc
Q 027539            1 MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMEDEQ-----S------------WNEDHILRLQWLRTFLGR   63 (222)
Q Consensus         1 mi~RaaKHilr~~l~~~~~~~~~~~~iahfLNcLlg~~~~~~d~-----~------------~k~~~~~~~~~i~~~v~~   63 (222)
                      ||+|++|||||.++++++. ..++.+|+||||||||+..++...     .            .+.++..+|++|+++++.
T Consensus        49 miaR~~K~i~r~~l~~~~~-~~~~~~v~~~lN~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~l~~~I~~ev~~  127 (169)
T PF12807_consen   49 MIARAAKHILREYLRSVPQ-SELSSAVSHFLNCLLGSSSNSKPKKEKKEKNSNSKSKSDSSWSKLTPSSLWSEIEKEVKS  127 (169)
T ss_pred             HHHHHHHHHHHHHHHccch-hhHHHHHHHHHHHhhCCCccccccccccchhccccccccchhhhcCcHHHHHHHHHHHHH
Confidence            8999999999999999996 799999999999999988765311     0            012367899999999999


Q ss_pred             cccccccccccc----hhhHHHHHHHHHHHceeeeccccCCC
Q 027539           64 RFGWSLKDEFQH----LRKISILRGLCHKVGLELVPRDYDMD  101 (222)
Q Consensus        64 rfry~L~~~~~~----~~k~~lLR~ic~K~GIQl~~rdY~f~  101 (222)
                      ||||+++.+|..    ++|++|||+||+|+||||++|||+||
T Consensus       128 rf~y~l~~~~~~~~~~~~~~~LLR~ic~k~GiQl~~r~Y~f~  169 (169)
T PF12807_consen  128 RFRYELPEDWFDEKYGLQKIQLLREICQKTGIQLLARDYDFT  169 (169)
T ss_pred             hcCCcCchHHhhhhccccHHHHHHHHHHHhCeEeeeecCCCC
Confidence            999999998875    99999999999999999999999997

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.27  E-value=3.8e-12  Score=91.11  Aligned_cols=74  Identities=22%  Similarity=0.328  Sum_probs=66.3

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS  206 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a  206 (222)
                      .+.-+.+.|.++..+|++++|+++|++|+.+ .+.+|+.||+++.++++||.+|+.+|++++|+    .+.      ++|
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~----~~~------~~a   72 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEAL----EYY------QKA   72 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHH----HHH------HHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHH----HHH------HHH
Confidence            4555677799999999999999999999999 88999999999999999999999999999999    777      678


Q ss_pred             EEEee
Q 027539          207 IIITS  211 (222)
Q Consensus       207 ~~i~e  211 (222)
                      +.|.|
T Consensus        73 l~i~~   77 (78)
T PF13424_consen   73 LDIFE   77 (78)
T ss_dssp             HHHHH
T ss_pred             Hhhhc
Confidence            77654

...

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.12  E-value=6.9e-11  Score=113.73  Aligned_cols=82  Identities=24%  Similarity=0.274  Sum_probs=74.8

Q ss_pred             CchhHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCC
Q 027539          124 TSADGRTLLE-SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGD  202 (222)
Q Consensus       124 ~s~~a~~lle-~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~  202 (222)
                      ...+...++. -|..+.++|++++|..+|++||+|+++++|+.||.||..+++||.+|+.+|++++|.    .+.     
T Consensus       236 ~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~----~~~-----  306 (508)
T KOG1840|consen  236 KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAE----EYC-----  306 (508)
T ss_pred             cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHH----HHH-----
Confidence            3555555555 899999999999999999999999999999999999999999999999999999999    888     


Q ss_pred             CCceEEEeeeech
Q 027539          203 SKSSIIITSFCTE  215 (222)
Q Consensus       203 ~~~a~~i~e~~~~  215 (222)
                       ++|+.|+++..|
T Consensus       307 -e~Al~I~~~~~~  318 (508)
T KOG1840|consen  307 -ERALEIYEKLLG  318 (508)
T ss_pred             -HHHHHHHHHhhc
Confidence             899999998554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.43  E-value=2.8e-07  Score=88.97  Aligned_cols=82  Identities=21%  Similarity=0.182  Sum_probs=74.1

Q ss_pred             cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCC
Q 027539          123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGD  202 (222)
Q Consensus       123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~  202 (222)
                      ...-.+..+.+.|.++..++++++|..++.+++.|++++.|+.||.+|..|.+||.+|+++|+|.||.    +++     
T Consensus       320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~----~~~-----  390 (508)
T KOG1840|consen  320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE----ELY-----  390 (508)
T ss_pred             ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH----HHH-----
Confidence            34456777888899999999999999999999999999999999999999999999999999999999    999     


Q ss_pred             CCceEEEeeeec
Q 027539          203 SKSSIIITSFCT  214 (222)
Q Consensus       203 ~~~a~~i~e~~~  214 (222)
                       |+|+.|.++.-
T Consensus       391 -k~ai~~~~~~~  401 (508)
T KOG1840|consen  391 -KKAIQILRELL  401 (508)
T ss_pred             -HHHHHHHHhcc
Confidence             88888875543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.41  E-value=5.5e-07  Score=56.36  Aligned_cols=41  Identities=22%  Similarity=0.260  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRT  168 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpe  168 (222)
                      |..+.+.|..+..+|++++|.+++.+++.++++++|+.|||
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            44556679999999999999999999999999999999997

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.20  E-value=2.3e-06  Score=59.41  Aligned_cols=59  Identities=20%  Similarity=0.330  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC-ChhhHhhchHHhh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG-DFNQVRQSSVVFQ  197 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G-d~~eAi~~~~~~~  197 (222)
                      .|......|..+..+|++++|++.|++|+.+        +|+-+..+.++|.+|..+| ++++|+    .+.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~----~~~   61 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAI----EDF   61 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHH----HHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHH----HHH
Confidence            3667788899999999999999999999987        5777789999999999999 799999    666

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.95  E-value=1.3e-05  Score=55.15  Aligned_cols=51  Identities=18%  Similarity=0.375  Sum_probs=45.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +..|+.++.+|++++|.+.|++++.        .+|+-..++..||.+++.+|++++|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~   51 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEAL   51 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            4579999999999999999988884        55999999999999999999999999

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=97.94  E-value=1e-06  Score=91.50  Aligned_cols=141  Identities=44%  Similarity=0.635  Sum_probs=121.9

Q ss_pred             HHhccccccccccccc-chhhHHHHHHHHHHHceeeeccccCCCCCCCCCcCCcccccccccccccCchhHHHHHHHHHH
Q 027539           59 TFLGRRFGWSLKDEFQ-HLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKI  137 (222)
Q Consensus        59 ~~v~~rfry~L~~~~~-~~~k~~lLR~ic~K~GIQl~~rdY~f~~~~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~  137 (222)
                      ++...||++++..=-. -+.++--.|-.|...++.-..++|.|++..||...|++..+||-|+...-+.+.+   |++..
T Consensus       562 ~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i~~~e~~~~~~~~ds~~~~~~~d~~~~~~v~~l~~~is~d~~---eS~~~  638 (1236)
T KOG1839|consen  562 EELAEKYPHKLSLLRPELILKFYEHRLLAFIVAVENAAEDYGFDSSNPFKKSDAIGLVPVHKLVNCISADGR---ESSKL  638 (1236)
T ss_pred             hhccccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcchhhccCCccccccccchhhHHHHHHHHHhhccccc---ccccc
Confidence            5667777777765333 5677777777888888888888999999999999999999999999999999998   55655


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEeeeechhc
Q 027539          138 ALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTEVL  217 (222)
Q Consensus       138 ~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~e~~~~~~  217 (222)
                      ..     ++|.+.+..++.-.-.++|++|..++-+|.+ +.+.++.|++.+|.    .++      ++++.|.||..|.-
T Consensus       639 ~~-----~dav~~~~~al~k~~~~~~~~~fnp~~f~s~-~v~~~~t~~~~~a~----~~~------qk~~d~~Erll~~~  702 (1236)
T KOG1839|consen  639 SL-----DDAVKYATKALVKLVAVCGPYGFNPAGFYSL-AVVLYHTEDFNQAA----IQQ------QKVLDINERLLGLD  702 (1236)
T ss_pred             ch-----HHHHHHHHHHHHHHHhhhcccccCccccccC-ceEecCccccchhh----hhh------HhHHHHHHHHhccc
Confidence            55     4899999999999999999999999999998 99999999999999    888      89999999988864


Q ss_pred             c
Q 027539          218 I  218 (222)
Q Consensus       218 ~  218 (222)
                      |
T Consensus       703 i  703 (1236)
T KOG1839|consen  703 I  703 (1236)
T ss_pred             c
Confidence            4

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.80  E-value=5.8e-06  Score=58.79  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=30.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEeeee
Q 027539          166 HRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFC  213 (222)
Q Consensus       166 HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~e~~  213 (222)
                      ||+++.+|++||.+|..+|++++|+    .++      ++|+.+ .+.
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~----~~~------~~al~~-~~~   37 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEAL----DYY------EKALDI-EEQ   37 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHH----HHH------HHHHHH-HHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHH----HHH------HHHHHH-HHH
Confidence            9999999999999999999999999    777      678777 443

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.80  E-value=6.8e-05  Score=61.02  Aligned_cols=73  Identities=8%  Similarity=0.042  Sum_probs=61.0

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCC
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDS  203 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~  203 (222)
                      .-.-+.-.+..|..+..+|++++|+..|.+|+.+.     +.|++.+.++.+||.+|..+|++++|+    .+.      
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~----~~~------   95 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKAL----EYY------   95 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHH----HHH------
Confidence            33456667788999999999999999999999983     457778899999999999999999999    666      


Q ss_pred             CceEEEee
Q 027539          204 KSSIIITS  211 (222)
Q Consensus       204 ~~a~~i~e  211 (222)
                      ++|+.+..
T Consensus        96 ~~Al~~~~  103 (168)
T CHL00033         96 FQALERNP  103 (168)
T ss_pred             HHHHHhCc
Confidence            56666544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.60  E-value=1.9e-05  Score=49.21  Aligned_cols=37  Identities=19%  Similarity=0.160  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEeeeech
Q 027539          169 TASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTE  215 (222)
Q Consensus       169 vA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~e~~~~  215 (222)
                      ||.++++||.+|..+|++++|+    .+.      ++|+.|.++..|
T Consensus         1 ta~~~~~la~~~~~~g~~~~A~----~~~------~~al~~~~~~~G   37 (42)
T PF13374_consen    1 TASALNNLANAYRAQGRYEEAL----ELL------EEALEIRERLLG   37 (42)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHH----HHH------HHHHHHH-----
T ss_pred             CHHHHHHHHHHHHhhhhcchhh----HHH------HHHHHHHHHHhc
Confidence            6899999999999999999999    888      789999888765

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.59  E-value=0.00019  Score=58.85  Aligned_cols=62  Identities=10%  Similarity=0.114  Sum_probs=54.0

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +...+...+..|..+..+|++++|.++|.+|+.+.     +.+++.+..+.++|.+|..+|++++|+
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~   92 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKAL   92 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHH
Confidence            44556667888999999999999999999999874     456677889999999999999999999

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.45  E-value=0.00035  Score=66.66  Aligned_cols=69  Identities=13%  Similarity=0.090  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCc
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKS  205 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~  205 (222)
                      .++...++.|..+..+|++++|++.|++||.+     .|.|++...+|+|+|.+|..+|++++|+    ...      ++
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAl----a~L------rr  137 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAA----DCL------RT  137 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHH----HHH------HH
Confidence            44555666799999999999999999999998     4788888889999999999999999999    666      56


Q ss_pred             eEEE
Q 027539          206 SIII  209 (222)
Q Consensus       206 a~~i  209 (222)
                      |+.+
T Consensus       138 ALel  141 (453)
T PLN03098        138 ALRD  141 (453)
T ss_pred             HHHh
Confidence            7665

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.39  E-value=0.00022  Score=70.47  Aligned_cols=62  Identities=23%  Similarity=0.277  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEe
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIIT  210 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~  210 (222)
                      +.+.|.++..+|+.++|..||..|+.+        .|+-|...+|||.+|.++|.+++|+    .+|      |.|+.|.
T Consensus       357 m~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai----~~Y------kealrI~  418 (966)
T KOG4626|consen  357 MNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAI----MCY------KEALRIK  418 (966)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHH----HHH------HHHHhcC
Confidence            333477777777777777777777754        5899999999999999999999999    777      7777765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.31  E-value=0.0006  Score=50.60  Aligned_cols=57  Identities=16%  Similarity=0.258  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +..+..|..+..+|++++|.+.|.+++..     .|.++..+.++..+|.+++..|++++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~   59 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAA   59 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHH
Confidence            45677788888888888888888877754     3556666777888888888888888887

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.22  E-value=0.0004  Score=55.84  Aligned_cols=58  Identities=16%  Similarity=0.040  Sum_probs=46.8

Q ss_pred             cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      |....+  ....|.++...|++++|.+.|.+|+.+        .|+-+..+.++|.++..+|++++|+
T Consensus        55 P~~~~a--~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi  112 (144)
T PRK15359         55 PWSWRA--HIALAGTWMMLKEYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAR  112 (144)
T ss_pred             CCcHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHH
Confidence            444444  455688999999999988888888864        5777888999999999999999999

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.22  E-value=0.00021  Score=58.14  Aligned_cols=76  Identities=14%  Similarity=0.059  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEE
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSII  208 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~  208 (222)
                      ......|.++..+|++++|+.++.+|+.+. .-++..|..++.+|.++++++..+|++++|+    .+.      ++|+.
T Consensus        73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~----~~~------~~a~~  141 (168)
T CHL00033         73 YILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAE----AWF------DQAAE  141 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHH----HHH------HHHHH
Confidence            345667999999999999999999999873 2233445555555555555555999999888    444      45655


Q ss_pred             Eeeeech
Q 027539          209 ITSFCTE  215 (222)
Q Consensus       209 i~e~~~~  215 (222)
                      +.++..+
T Consensus       142 ~~~~a~~  148 (168)
T CHL00033        142 YWKQAIA  148 (168)
T ss_pred             HHHHHHH
Confidence            5555443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.21  E-value=0.00072  Score=61.45  Aligned_cols=77  Identities=14%  Similarity=0.175  Sum_probs=65.4

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH----------HHHhC----------------CCChHHHHHHHHHH
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARM----------IAVCG----------------PYHRTTASTYSLLA  177 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~----------eqV~G----------------~~HpevA~~y~~LA  177 (222)
                      ....|+.+=..|.-.+..++|++|+..|++|+.+-          -++|-                .+.|.-.++|..|+
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG  156 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG  156 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            34789999999999999999999999999999853          23443                34588889999999


Q ss_pred             HHHHHcCChhhHhhchHHhhhhhCCCCceEEEe
Q 027539          178 VVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIIT  210 (222)
Q Consensus       178 ~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~  210 (222)
                      ++|+.+|++++|+    +.|      |+||.|.
T Consensus       157 ~A~~~~gk~~~A~----~ay------kKaLeld  179 (304)
T KOG0553|consen  157 LAYLALGKYEEAI----EAY------KKALELD  179 (304)
T ss_pred             HHHHccCcHHHHH----HHH------HhhhccC
Confidence            9999999999999    888      8898773

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.14  E-value=0.0013  Score=52.92  Aligned_cols=58  Identities=21%  Similarity=0.232  Sum_probs=47.4

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ...+......|..+..+|++++|.+.+.+++..        +|+.+..+..+|.+|..+|++++|+
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~   85 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAE   85 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHH
Confidence            344566677799999999999999999988764        5677788888999999999988887

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.10  E-value=0.00061  Score=49.30  Aligned_cols=55  Identities=22%  Similarity=0.323  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +..-.+..|+++..+|++++|++++.+ +        ...|....+...+|++++++|++++|+
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~--------~~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-L--------KLDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-H--------THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-h--------CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            555667789999999999999998888 1        223333566667899999999999999

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.02  E-value=0.00081  Score=46.80  Aligned_cols=48  Identities=19%  Similarity=0.282  Sum_probs=44.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          135 SKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       135 g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .++++.++++++|.+.+.+++.+        +|+-...+...|.+|+.+|++.+|+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~   49 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEAL   49 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHH
Confidence            46789999999999999999987        8889999999999999999999999

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.00  E-value=0.00067  Score=67.21  Aligned_cols=70  Identities=24%  Similarity=0.180  Sum_probs=54.6

Q ss_pred             ccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhh
Q 027539          120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQ  199 (222)
Q Consensus       120 ~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~  199 (222)
                      +..|..+.|.+.+  |-++-+||++++|++.|+|||.|        -|.-|.+|+|++.+|-.+||..+|+    ..+  
T Consensus       382 ~v~p~~aaa~nNL--a~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~----q~y--  445 (966)
T KOG4626|consen  382 EVFPEFAAAHNNL--ASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAI----QCY--  445 (966)
T ss_pred             hhChhhhhhhhhH--HHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHH----HHH--
Confidence            4445555555555  89999999999999999999965        6888888888888888888888888    555  


Q ss_pred             hCCCCceEEE
Q 027539          200 LGDSKSSIII  209 (222)
Q Consensus       200 ~~~~~~a~~i  209 (222)
                          .+|+.|
T Consensus       446 ----~rAI~~  451 (966)
T KOG4626|consen  446 ----TRAIQI  451 (966)
T ss_pred             ----HHHHhc
Confidence                566554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.97  E-value=0.0019  Score=47.89  Aligned_cols=58  Identities=16%  Similarity=0.157  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQ  191 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~  191 (222)
                      .-.+..|.++...|++++|..+|.+++..+     |.||.+..++..+|.++.++|++++|+.
T Consensus        40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~A~~   97 (119)
T TIGR02795        40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKSPKAPDALLKLGMSLQELGDKEKAKA   97 (119)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCCCcccHHHHHHHHHHHHhCChHHHHH
Confidence            345667999999999999999999999754     7888888999999999999999999993

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.96  E-value=0.0016  Score=44.68  Aligned_cols=44  Identities=25%  Similarity=0.448  Sum_probs=38.2

Q ss_pred             HhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          139 LDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       139 l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.+|++++|+++|++++..        +|+-......||.+|..+|++++|.
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~   45 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAE   45 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHH
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            6789999999999999876        6767777789999999999999999

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.95  E-value=0.0018  Score=51.69  Aligned_cols=65  Identities=23%  Similarity=0.229  Sum_probs=48.8

Q ss_pred             cccCchh-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          121 VGCTSAD-GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       121 ~~p~s~~-a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..|.++. ....+..|+.+..+|++++|.+.|.+++.-     ++..+-...+...||.++..+|++++|+
T Consensus        40 ~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~~~a~l~LA~~~~~~~~~d~Al  105 (145)
T PF09976_consen   40 DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPELKPLARLRLARILLQQGQYDEAL  105 (145)
T ss_pred             HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3455533 355677899999999999999998887762     2444445566778999999999999998

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.89  E-value=0.0065  Score=51.45  Aligned_cols=73  Identities=22%  Similarity=0.313  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCC
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSK  204 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~  204 (222)
                      +++.+++.|...+++|++++|.++|.+...-+     |.+|-+..+...+|..|+.+|++++|+..-..|.....++.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~   76 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP   76 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence            57889999999999999999999998887664     88999999999999999999999999966666654444443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.84  E-value=0.002  Score=59.41  Aligned_cols=54  Identities=13%  Similarity=0.236  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-.+..|.+++..|++++|+..+.+|+.+        .|+-+.+|..+|.+|+.+|++++|+
T Consensus        37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~~~~a~~~lg~~~~~lg~~~eA~   90 (356)
T PLN03088         37 ELYADRAQANIKLGNFTEAVADANKAIEL--------DPSLAKAYLRKGTACMKLEEYQTAK   90 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHhCCHHHHH
Confidence            34566788899999999999999988886        4566678899999999999999999

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.83  E-value=0.0019  Score=51.89  Aligned_cols=52  Identities=12%  Similarity=-0.012  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+..|.++.++|++++|.+.|.+++.+        .|+-...+.++|.++..+|++++|+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~   78 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAI   78 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHH
Confidence            556799999999999999999998854        6778899999999999999999999

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.81  E-value=0.0018  Score=49.89  Aligned_cols=52  Identities=17%  Similarity=0.067  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ....|..+..+|++++|.+.+.+++.+        +|+....+.++|.+|..+|++++|+
T Consensus        54 ~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~  105 (135)
T TIGR02552        54 WLGLAACCQMLKEYEEAIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESAL  105 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHH
Confidence            334577777788888777777777663        5777778888888888888888888

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=96.80  E-value=0.0063  Score=51.43  Aligned_cols=55  Identities=16%  Similarity=0.176  Sum_probs=49.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539          132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQ  191 (222)
Q Consensus       132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~  191 (222)
                      ++.|..++.+|++++|...|.+++..+     |.+|..+..+..++.+|..+|++++|+.
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~  224 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQD  224 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence            367889999999999999999999875     4479999999999999999999999993

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.74  E-value=0.0026  Score=48.95  Aligned_cols=55  Identities=9%  Similarity=0.045  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +...+..|..++.+|++++|.+++.+++.+        +|+....+..+|.+|+.+|++++|+
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~   71 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAI   71 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            455777899999999999999999888764        5667788999999999999999999

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.72  E-value=0.0024  Score=58.93  Aligned_cols=55  Identities=22%  Similarity=0.228  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.+++..|+....+|++++|+++|.+|+.+        .|+-+.+|.++|.+|..+|++++|+
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl   56 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAV   56 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            356888999999999999999999999974        5556778999999999999999999

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.70  E-value=0.0054  Score=54.46  Aligned_cols=65  Identities=20%  Similarity=0.177  Sum_probs=54.8

Q ss_pred             CchhHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          124 TSADGRTLLESSKIALDK-GKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~q-G~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ...-|+-+.+.|+++..+ |++++|+++|.+|+.+|++--  .......|+..+|.++..+|+|++|+
T Consensus       110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~  175 (282)
T PF14938_consen  110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAI  175 (282)
T ss_dssp             HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHH
Confidence            345577788889999999 999999999999999999854  56778999999999999999999999

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.69  E-value=0.0031  Score=56.33  Aligned_cols=56  Identities=23%  Similarity=0.225  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+.-.++.|.++...|+.++|...|.+|+.+        .|+-+..|+++|.+|..+|++++|+
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3566888899999999999999999999984        5667788999999999999999998

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.66  E-value=0.0083  Score=47.57  Aligned_cols=57  Identities=23%  Similarity=0.229  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQ  191 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~  191 (222)
                      -.++.|-++-..|+.++|+++|.+|+.     .|..-++-..++-.||..|..+|++++|+.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~   59 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALA   59 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            467889999999999999999999987     477777788899999999999999999993

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=96.64  E-value=0.0064  Score=51.39  Aligned_cols=65  Identities=25%  Similarity=0.361  Sum_probs=56.2

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchH
Q 027539          125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSV  194 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~  194 (222)
                      .-.+...++.|..++..|++++|.+.+.+++..+     |.+|.....+..+|.+|+.+|++++|+....
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~   94 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAAD   94 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3456678999999999999999999999988765     7788888899999999999999999994333

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.61  E-value=0.0059  Score=51.81  Aligned_cols=63  Identities=17%  Similarity=0.145  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH----------HHH----hCCC---------------ChHHHHHHHHHHH
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARM----------IAV----CGPY---------------HRTTASTYSLLAV  178 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~----------eqV----~G~~---------------HpevA~~y~~LA~  178 (222)
                      ++..+..|+.+...|++++|.+.|.+|+.+.          -.+    .|..               +|+-..++++||.
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~  152 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS  152 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence            3344555999999999999999999888721          122    1442               6777788888888


Q ss_pred             HHHHcCChhhHh
Q 027539          179 VLYHTGDFNQVR  190 (222)
Q Consensus       179 vy~~~Gd~~eAi  190 (222)
                      .++.+|++++|+
T Consensus       153 ~~~~~g~~~~Ai  164 (198)
T PRK10370        153 DAFMQADYAQAI  164 (198)
T ss_pred             HHHHcCCHHHHH
Confidence            888888888888

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.54  E-value=0.0066  Score=48.78  Aligned_cols=51  Identities=20%  Similarity=0.222  Sum_probs=31.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ...|.++..+|++++|.+++.+++.+        +|.....+.+++.+|..+|++++|+
T Consensus        69 ~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~g~~~~A~  119 (234)
T TIGR02521        69 LALALYYQQLGELEKAEDSFRRALTL--------NPNNGDVLNNYGTFLCQQGKYEQAM  119 (234)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcccHHHHH
Confidence            33467777777777777777777654        2333345666666666666666666

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.50  E-value=0.019  Score=50.41  Aligned_cols=73  Identities=12%  Similarity=0.118  Sum_probs=59.6

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCC
Q 027539          125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGD  202 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~  202 (222)
                      +.++.+.++.|...+.+|++++|.++|.+.+..+     |.-|........||.+|+.+|++++|+.....|-....+
T Consensus        29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~  101 (243)
T PRK10866         29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT  101 (243)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence            4678889999999999999999999999988754     455788888899999999999999999555444433333

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.47  E-value=0.0042  Score=41.63  Aligned_cols=52  Identities=27%  Similarity=0.440  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+..|..+..+|++++|...+.+++.+.     |.++   ..+..+|.+|...|++++|+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~a~   54 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-----PDNA---DAYYNLAAAYYKLGKYEEAL   54 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-----CccH---HHHHHHHHHHHHHHHHHHHH
Confidence            4566888888999999988888887652     2233   67788899999999998888

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.42  E-value=0.0036  Score=61.07  Aligned_cols=55  Identities=22%  Similarity=0.204  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|..+.+.|..+..+|++++|++.|++|+.+.        |+ ...|.++|.+|..+|++++|+
T Consensus       126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------p~-~~~~~n~a~~~~~l~~~~~Ai  180 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK--------PD-PVYYSNRAACHNALGDWEKVV  180 (615)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------Cc-hHHHHHHHHHHHHhCCHHHHH
Confidence            36678889999999999999999999999764        33 347999999999999999999

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.42  E-value=0.00078  Score=41.89  Aligned_cols=29  Identities=10%  Similarity=0.339  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEe
Q 027539          172 TYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIIT  210 (222)
Q Consensus       172 ~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~  210 (222)
                      +|++||.+|..+|++++|+    +++      ++|+.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai----~~y------~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAI----EYY------EQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHH----HHH------HHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHH----HHH------HHHHHhc
Confidence            6899999999999999999    888      7776554

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.39  E-value=0.0067  Score=54.21  Aligned_cols=58  Identities=17%  Similarity=0.124  Sum_probs=49.0

Q ss_pred             cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      |..+.+.  ...|.++...|++++|.+.|.+|+.+        .|+-+..+.++|.+++.+|++++|+
T Consensus        95 P~~~~a~--~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~  152 (296)
T PRK11189         95 PDMADAY--NYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQ  152 (296)
T ss_pred             CCCHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            4444554  45599999999999999999999975        4666678999999999999999999

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.31  E-value=0.0082  Score=58.01  Aligned_cols=57  Identities=25%  Similarity=0.328  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQ  191 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~  191 (222)
                      .+...+..|+.++.+|++++|...+.+++.+        +|+.+.++..+|.+|..+|++++|+.
T Consensus        21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~   77 (899)
T TIGR02917        21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEK   77 (899)
T ss_pred             CHHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            6678899999999999999999999999964        77788899999999999999999993

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.27  E-value=0.005  Score=54.63  Aligned_cols=60  Identities=18%  Similarity=0.247  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc-CChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHT-GDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~-Gd~~eAi  190 (222)
                      |..+.++|.+ ..+++.++|.++|.+|+.+|.+  .......|.++..+|.+|... |++++|+
T Consensus        75 a~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~--~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai  135 (282)
T PF14938_consen   75 AKAYEEAANC-YKKGDPDEAIECYEKAIEIYRE--AGRFSQAAKCLKELAEIYEEQLGDYEKAI  135 (282)
T ss_dssp             HHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHH--CT-HHHHHHHHHHHHHHHCCTT--HHHHH
T ss_pred             HHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4444444555 4566899999999999999964  455677799999999999999 9999999

>PRK12370 invasion protein regulator; Provisional

Probab=96.26  E-value=0.0084  Score=58.16  Aligned_cols=59  Identities=8%  Similarity=-0.082  Sum_probs=47.7

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|..+.+.  ...|.++..+|++++|...|.+|+.+        .|+-+..+..+|.+|..+|++++|+
T Consensus       334 dP~~~~a~--~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi  392 (553)
T PRK12370        334 DHNNPQAL--GLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEAL  392 (553)
T ss_pred             CCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            34444443  44588999999999999999999985        4555567899999999999999998

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.11  E-value=0.02  Score=45.57  Aligned_cols=54  Identities=22%  Similarity=0.321  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .+..|++++++|++++|+..+.+         .+..+-.+..+..+|.+|..+|++++|+    ..+
T Consensus        88 ~l~LA~~~~~~~~~d~Al~~L~~---------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~----~~y  141 (145)
T PF09976_consen   88 RLRLARILLQQGQYDEALATLQQ---------IPDEAFKALAAELLGDIYLAQGDYDEAR----AAY  141 (145)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHh---------ccCcchHHHHHHHHHHHHHHCCCHHHHH----HHH
Confidence            45569999999999988887744         2445566778889999999999999999    666

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.08  E-value=0.0049  Score=50.39  Aligned_cols=54  Identities=20%  Similarity=0.254  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ......|.++...|++++|...+.+|+.+        +|+....+..++.+|..+|+...|.
T Consensus        73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~a~  126 (172)
T PRK02603         73 YILYNMGIIYASNGEHDKALEYYHQALEL--------NPKQPSALNNIAVIYHKRGEKAEEA  126 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHhHh
Confidence            34566799999999999999999999986        6777888889999999988754433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.07  E-value=0.0026  Score=38.23  Aligned_cols=31  Identities=16%  Similarity=0.401  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEe
Q 027539          170 ASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIIT  210 (222)
Q Consensus       170 A~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~  210 (222)
                      |.+|.++|.+|..+|++++|+    .+.      ++|+.|.
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~----~~~------~~al~~~   31 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEAL----EYY------QRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHH----HHH------HHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCchHHH----HHH------HHHHHHC
Confidence            678999999999999999999    777      6777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.00  E-value=0.011  Score=57.84  Aligned_cols=48  Identities=23%  Similarity=0.286  Sum_probs=24.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          135 SKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       135 g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      |.++...|++++|.+.|.+++.+        +|+-+.+|..+|.+|+.+|++++|+
T Consensus       372 a~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~  419 (615)
T TIGR00990       372 ASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAG  419 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            44444444444444444444433        2333445566666666666666666

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.90  E-value=0.024  Score=50.53  Aligned_cols=62  Identities=18%  Similarity=0.200  Sum_probs=45.5

Q ss_pred             CchhHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          124 TSADGRTLLESSKIA-LDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       124 ~s~~a~~lle~g~~~-l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+.+....++.|... +.+|++++|.+.|.+.+..|     |.++.+..++..||.+|+..|++++|+
T Consensus       138 ~~~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~  200 (263)
T PRK10803        138 QSGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAA  200 (263)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence            345666777777765 55678888888888888776     556666777777788888888777777

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.85  E-value=0.0088  Score=52.97  Aligned_cols=70  Identities=20%  Similarity=0.270  Sum_probs=58.3

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhC
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLG  201 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~  201 (222)
                      .|...|.-+++  |--.+.||++++|+..|.+|++      .|.-++.+.++-|++.+..++|++++|.    ++.    
T Consensus        99 ~p~~GdVLNNY--G~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~----~~l----  162 (250)
T COG3063          99 APNNGDVLNNY--GAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAE----EYL----  162 (250)
T ss_pred             CCCccchhhhh--hHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHH----HHH----
Confidence            45555555555  9999999999999999999876      4888999999999999999999999999    766    


Q ss_pred             CCCceEEE
Q 027539          202 DSKSSIII  209 (222)
Q Consensus       202 ~~~~a~~i  209 (222)
                        +||+.+
T Consensus       163 --~raL~~  168 (250)
T COG3063         163 --KRALEL  168 (250)
T ss_pred             --HHHHHh
Confidence              666543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=95.62  E-value=0.03  Score=49.87  Aligned_cols=50  Identities=20%  Similarity=0.119  Sum_probs=42.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          133 ESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       133 e~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..|..+..+|++++|.+.+.+++.+        .|+-+..+..+|.+|+.+|++++|+
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~  168 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGI  168 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHH
Confidence            3488899999999999999999885        4555778888999999999999998

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.56  E-value=0.027  Score=46.88  Aligned_cols=57  Identities=9%  Similarity=-0.025  Sum_probs=47.0

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -+-+.++.-|-...++|++++|..+|.-..        ..-|..+..+.+||.++..+|++++|+
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~--------~~Dp~~~~y~~gLG~~~Q~~g~~~~AI   89 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLT--------IYDAWSFDYWFRLGECCQAQKHWGEAI   89 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------HhCcccHHHHHHHHHHHHHHhhHHHHH
Confidence            344567777899999999999998885443        346788889999999999999999999

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=95.54  E-value=0.025  Score=59.07  Aligned_cols=48  Identities=15%  Similarity=0.098  Sum_probs=32.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          135 SKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       135 g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      |.++.++|++++|++.|.+|+.+        +|+-+..+.+||.+|..+|++++|+
T Consensus       650 G~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~  697 (987)
T PRK09782        650 GYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQ  697 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            55555566666666666665553        5666667788888888888888888

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.47  E-value=0.035  Score=34.27  Aligned_cols=31  Identities=29%  Similarity=0.314  Sum_probs=26.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAV  161 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV  161 (222)
                      +...|+++..+|++++|+++|.+||.+..+.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~   32 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALARDP   32 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            3456999999999999999999999887664

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=95.43  E-value=0.024  Score=37.78  Aligned_cols=54  Identities=22%  Similarity=0.305  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-.+..|.++..+|++++|.+++.+++.+.     +.++   ..+..+|.++..+|++++|.
T Consensus        35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~a~   88 (100)
T cd00189          35 DAYYNLAAAYYKLGKYEEALEDYEKALELD-----PDNA---KAYYNLGLAYYKLGKYEEAL   88 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----Ccch---hHHHHHHHHHHHHHhHHHHH
Confidence            335567999999999999999999988752     3333   78899999999999999999

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.41  E-value=0.031  Score=40.18  Aligned_cols=47  Identities=21%  Similarity=0.340  Sum_probs=35.1

Q ss_pred             hcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhc
Q 027539          140 DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQS  192 (222)
Q Consensus       140 ~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~  192 (222)
                      ++|+++.|+.++.+++.....     .| -...+..||.+|+++|++++|+..
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~   47 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIEL   47 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478888888888888776543     23 444666699999999999999933

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.40  E-value=0.01  Score=36.63  Aligned_cols=26  Identities=23%  Similarity=0.438  Sum_probs=24.5

Q ss_pred             CChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          165 YHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       165 ~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+|+-+..|++||.+|+..|++++|+
T Consensus         8 ~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    8 LNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            47999999999999999999999997

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=95.21  E-value=0.05  Score=48.95  Aligned_cols=52  Identities=27%  Similarity=0.290  Sum_probs=35.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ....|..+..+|++++|..+|.+++.+        .|+...++..||.+|..+|++++|+
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~  234 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAI  234 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHH
Confidence            345566777777777777777777653        3444556677777777777777776

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.19  E-value=0.019  Score=50.84  Aligned_cols=90  Identities=11%  Similarity=-0.044  Sum_probs=70.2

Q ss_pred             cccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh----------
Q 027539          121 VGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR----------  190 (222)
Q Consensus       121 ~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi----------  190 (222)
                      .+|++.++...+  |-.+..+|..+.|.+.|.+|++        +||.-+..+||-+.-++.+|++++|.          
T Consensus        64 ~DPs~~~a~~~~--A~~Yq~~Ge~~~A~e~YrkAls--------l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P  133 (250)
T COG3063          64 HDPSYYLAHLVR--AHYYQKLGENDLADESYRKALS--------LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADP  133 (250)
T ss_pred             hCcccHHHHHHH--HHHHHHcCChhhHHHHHHHHHh--------cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCC
Confidence            456777776665  8889999999999999999996        58999999999999999999999997          


Q ss_pred             ---------hchHHhhhhhCCCCceEEEeeeechhcccc
Q 027539          191 ---------QSSVVFQCQLGDSKSSIIITSFCTEVLIQR  220 (222)
Q Consensus       191 ---------~~~~~~~~~~~~~~~a~~i~e~~~~~~~~~  220 (222)
                               ..++.+.-+-|+..+|-++.+|.+...-|.
T Consensus       134 ~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~  172 (250)
T COG3063         134 AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF  172 (250)
T ss_pred             CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence                     222333334477777777777777665554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=95.16  E-value=0.047  Score=52.78  Aligned_cols=66  Identities=20%  Similarity=0.108  Sum_probs=48.2

Q ss_pred             cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH---------------------------HHHHhCCCChHHHHHHHH
Q 027539          123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALAR---------------------------MIAVCGPYHRTTASTYSL  175 (222)
Q Consensus       123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i---------------------------~eqV~G~~HpevA~~y~~  175 (222)
                      |..+.+..  ..|.++..+|++++|...+.+++..                           ++++.+...|..+..+..
T Consensus        53 p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  130 (899)
T TIGR02917        53 PNDAEARF--LLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLAL  130 (899)
T ss_pred             CCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHH
Confidence            33444444  4599999999999999998887653                           334444566777788888


Q ss_pred             HHHHHHHcCChhhHh
Q 027539          176 LAVVLYHTGDFNQVR  190 (222)
Q Consensus       176 LA~vy~~~Gd~~eAi  190 (222)
                      +|..|..+|++++|+
T Consensus       131 ~~~~~~~~~~~~~A~  145 (899)
T TIGR02917       131 RGLAYLGLGQLELAQ  145 (899)
T ss_pred             HHHHHHHcCCHHHHH
Confidence            888888888888887

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.14  E-value=0.056  Score=54.53  Aligned_cols=61  Identities=18%  Similarity=0.172  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .....|.++..+|++++|.+++.+++.+.++..++.++..+..+..+|.+++.+|++++|.
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~  593 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAE  593 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence            3445577889999999999999999999999877777877888889999999999999998

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=95.14  E-value=0.046  Score=54.39  Aligned_cols=58  Identities=16%  Similarity=0.194  Sum_probs=44.1

Q ss_pred             cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      |....+  ....|.++..+|++++|.+.+.+++.+        +|+.+..+.+||.+|..+|++++|+
T Consensus       281 P~~~~a--~~~lg~~l~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~  338 (656)
T PRK15174        281 SDNVRI--VTLYADALIRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAAS  338 (656)
T ss_pred             CCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            444444  344488888889999898888888874        5555566778899999999999887

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.10  E-value=0.0098  Score=35.27  Aligned_cols=30  Identities=13%  Similarity=0.404  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEE
Q 027539          170 ASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIII  209 (222)
Q Consensus       170 A~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i  209 (222)
                      |..+..+|.+|+.+|++++|+    .+.      ++|+.+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~----~~~------~~al~l   30 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAI----EYF------EKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHH----HHH------HHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHH----HHH------HHHHHH
Confidence            578999999999999999999    776      566544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.09  E-value=0.066  Score=47.74  Aligned_cols=59  Identities=19%  Similarity=0.271  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      -.+-.|..+..+|++++|...|..++..|     |.||.+..++..+|.+|..+|++++|.    ..+
T Consensus       182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~klg~~~~~~g~~~~A~----~~~  240 (263)
T PRK10803        182 ANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFKVGVIMQDKGDTAKAK----AVY  240 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHHHHHHHHHcCCHHHHH----HHH
Confidence            45667999999999999998888887776     899999999999999999999999999    666

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.08  E-value=0.061  Score=50.40  Aligned_cols=67  Identities=16%  Similarity=0.111  Sum_probs=63.6

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ....+.+++..|+.++.++.++.|..-|++|..+...+||.-|-+++..+..-+..+...++++.++
T Consensus        37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V  103 (400)
T KOG4563|consen   37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV  103 (400)
T ss_pred             HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3466889999999999999999999999999999999999999999999999999999999998888

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.06  E-value=0.1  Score=46.86  Aligned_cols=82  Identities=16%  Similarity=0.147  Sum_probs=63.1

Q ss_pred             cccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhh
Q 027539          119 KHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQC  198 (222)
Q Consensus       119 K~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~  198 (222)
                      ++..|.+ ++..+++.|--++..|+|.+|..-|.+=+.-|     |.-+-++.++.-|+..+|.+|+|++|...-.....
T Consensus       133 ~~~~p~~-~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k  206 (262)
T COG1729         133 GDGAPVS-PATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK  206 (262)
T ss_pred             CCCCCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            3344444 77789999999999999999998887765543     88899999999999999999999999844444444


Q ss_pred             hhCCCCce
Q 027539          199 QLGDSKSS  206 (222)
Q Consensus       199 ~~~~~~~a  206 (222)
                      -.+++.+|
T Consensus       207 ~~P~s~KA  214 (262)
T COG1729         207 DYPKSPKA  214 (262)
T ss_pred             hCCCCCCC
Confidence            45555554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=95.00  E-value=0.046  Score=49.18  Aligned_cols=56  Identities=11%  Similarity=-0.012  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+...+-.|..+..+|++++|+++|.+++..        +|+...++..+|.+|..+|++++|+
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~   89 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAI   89 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHH
Confidence            3344555677788888888888888887764        4566677788888888888888887

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.99  E-value=0.071  Score=31.78  Aligned_cols=31  Identities=19%  Similarity=0.276  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARM  158 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~  158 (222)
                      |+..+..|.++..+|++++|++.|++|+.+-
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            4556788999999999999999999999873

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.90  E-value=0.078  Score=31.22  Aligned_cols=31  Identities=23%  Similarity=0.224  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARM  158 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~  158 (222)
                      |+-.+..|..+..+|++++|.+.|.+|+.+.
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            3456778999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.78  E-value=0.19  Score=37.74  Aligned_cols=56  Identities=18%  Similarity=0.216  Sum_probs=43.0

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHH---------------HHHHHhCCCChHHHHHHHHHHHHHH
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALA---------------RMIAVCGPYHRTTASTYSLLAVVLY  181 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~---------------i~eqV~G~~HpevA~~y~~LA~vy~  181 (222)
                      .|.+..+..|..++..|++++|++.+.+.+.               -.-+++|+-||-|.+.-+.|++++|
T Consensus        20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL~   90 (90)
T PF14561_consen   20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLLF   90 (90)
T ss_dssp             T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhC
Confidence            4556667779999999999999999877765               3447889999999999999999876

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=94.56  E-value=0.071  Score=53.78  Aligned_cols=60  Identities=23%  Similarity=0.130  Sum_probs=46.2

Q ss_pred             cccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          121 VGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       121 ~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..|.+.++..+  .|....+.|++++|.++|.+++.        -||+-+..+..+|..+..+|+.++|+
T Consensus       149 ~~p~~~~~~~~--~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~  208 (694)
T PRK15179        149 GGSSSAREILL--EAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRAR  208 (694)
T ss_pred             cCCCCHHHHHH--HHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            34555555444  47788888888888888777775        47788888899999999999999998

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.55  E-value=0.17  Score=45.23  Aligned_cols=75  Identities=16%  Similarity=0.142  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS  206 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a  206 (222)
                      -+.++.+.|+..++.|++++|.+.|+...  .+-.+|   |..-++.-.|+-.+|+.|++++|+.....|-++.+-+.++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~--~~~p~s---~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALD--SRHPFS---PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCC---cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            46789999999999999999999997665  344444   4456778899999999999999999988888777666543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=94.46  E-value=0.052  Score=57.20  Aligned_cols=52  Identities=19%  Similarity=0.158  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+..|..++.+|++++|.++|.+++.+        +|+-+..+..||.+|..+|++++|+
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~  405 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAE  405 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            456688899999999999999999987        5666778999999999999999999

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=94.32  E-value=0.081  Score=51.55  Aligned_cols=67  Identities=22%  Similarity=0.103  Sum_probs=54.0

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhC
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLG  201 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~  201 (222)
                      .|..+.+.+.+  |-.+..+|++++|...+++|+.+-        |. +..|..+|.+|-..|++++|+    +++    
T Consensus       416 ~~~~~~~~~al--a~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~----~~~----  476 (517)
T PRK10153        416 LNVLPRIYEIL--AVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAA----DAY----  476 (517)
T ss_pred             CcCChHHHHHH--HHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHH----HHH----
Confidence            34444555554  777888999999999999999876        54 789999999999999999999    666    


Q ss_pred             CCCceEEE
Q 027539          202 DSKSSIII  209 (222)
Q Consensus       202 ~~~~a~~i  209 (222)
                        ++|+.+
T Consensus       477 --~~A~~L  482 (517)
T PRK10153        477 --STAFNL  482 (517)
T ss_pred             --HHHHhc
Confidence              566554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=94.24  E-value=0.076  Score=55.98  Aligned_cols=49  Identities=16%  Similarity=0.161  Sum_probs=44.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|..++.+|++++|++.|.+++.+        +|+.+..+..||.+|..+|++++|+
T Consensus       275 ~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~  323 (1157)
T PRK11447        275 QGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAV  323 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            388899999999999999999986        5666788999999999999999999

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=94.23  E-value=0.09  Score=52.30  Aligned_cols=60  Identities=12%  Similarity=0.059  Sum_probs=49.5

Q ss_pred             cccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          121 VGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       121 ~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..|..+++...+  |.++...|++++|...|.+++..        +|+.+..+..+|.++..+|++++|+
T Consensus       313 l~P~~~~a~~~L--a~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~  372 (656)
T PRK15174        313 THPDLPYVRAMY--ARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAE  372 (656)
T ss_pred             hCCCCHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHH
Confidence            356666665554  99999999999999999888874        5666667788899999999999999

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=94.16  E-value=0.11  Score=48.33  Aligned_cols=63  Identities=13%  Similarity=0.160  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI  207 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~  207 (222)
                      +.-.+..|++++.+|++++|.+.|.+++++        +|+... +..||.++-++|+.++|.    .++      ++++
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--------~P~~~~-~~~La~~~~~~g~~~~A~----~~~------~~~l  388 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--------RPDAYD-YAWLADALDRLHKPEEAA----AMR------RDGL  388 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCHHH-HHHHHHHHHHcCCHHHHH----HHH------HHHH
Confidence            334556699999999999999999999986        677655 447999999999999999    888      6665


Q ss_pred             EE
Q 027539          208 II  209 (222)
Q Consensus       208 ~i  209 (222)
                      ..
T Consensus       389 ~~  390 (398)
T PRK10747        389 ML  390 (398)
T ss_pred             hh
Confidence            43

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=94.15  E-value=0.022  Score=33.93  Aligned_cols=30  Identities=17%  Similarity=0.357  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEE
Q 027539          170 ASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIII  209 (222)
Q Consensus       170 A~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i  209 (222)
                      |..|..+|.+|..+|++++|+    .+.      ++|+.+
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~----~~~------~~a~~~   30 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEAL----EYF------EKALEL   30 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHH----HHH------HHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHH----HHH------HHHHhh
Confidence            578999999999999999999    666      566543

...

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.13  E-value=0.23  Score=40.76  Aligned_cols=67  Identities=22%  Similarity=0.313  Sum_probs=54.3

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      ..+.+++..|+..+++|++++|.+.++...+=|     |--|-...+...|+-+||+.|++++|++---.|-
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi   74 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI   74 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            446789999999999999999988887655443     6666677889999999999999999995554443

>PRK12370 invasion protein regulator; Provisional

Probab=94.05  E-value=0.096  Score=50.87  Aligned_cols=60  Identities=17%  Similarity=0.077  Sum_probs=37.8

Q ss_pred             cccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          121 VGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       121 ~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+|.++.+..  ..|.++..+|++++|++.+.+|+.+     .|.++.   .+..++.+++.+|++++|+
T Consensus       367 l~P~~~~a~~--~lg~~l~~~G~~~eAi~~~~~Al~l-----~P~~~~---~~~~~~~~~~~~g~~eeA~  426 (553)
T PRK12370        367 LSPISADIKY--YYGWNLFMAGQLEEALQTINECLKL-----DPTRAA---AGITKLWITYYHTGIDDAI  426 (553)
T ss_pred             hCCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHHhc-----CCCChh---hHHHHHHHHHhccCHHHHH
Confidence            3556666554  4599999999999999999888775     233332   2233444455555555554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.98  E-value=0.15  Score=42.17  Aligned_cols=53  Identities=25%  Similarity=0.195  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ++=-.|-+....|+++.|+|+|.+||.+        -|+-|.+|||-|..|..+|+.++|+
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~AL   97 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEAL   97 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHH
Confidence            3333566677778999999999999975        5888999999999999999999998

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.86  E-value=0.049  Score=51.94  Aligned_cols=57  Identities=23%  Similarity=0.186  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-=+.|.....+|++.+|++.|++||+|=..    .-.-.|.+|.+.|.|+..+|+..+|+
T Consensus       251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eai  307 (486)
T KOG0550|consen  251 VKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAI  307 (486)
T ss_pred             HHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhh
Confidence            3346788888999999999999999998544    33456899999999999999999999

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=93.74  E-value=0.13  Score=45.64  Aligned_cols=58  Identities=9%  Similarity=0.163  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT-ASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev-A~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      ....|.++..+|++++|..++.+++.....     +|+. ..+|..+|.++..+|++++|+    ..+
T Consensus       151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A~----~~~  209 (355)
T cd05804         151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAAL----AIY  209 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHHH----HHH
Confidence            344599999999999999999999877643     3443 457889999999999999999    555

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=93.65  E-value=0.11  Score=54.51  Aligned_cols=54  Identities=20%  Similarity=0.255  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ......|.++...|++++|++.|.+++.+        +|+-+..+++||.++..+|++++|+
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL~~~G~~eeAi  663 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYALWDSGDIAQSR  663 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            34456688888888888888888888876        4666678889999999999999987

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=93.60  E-value=0.31  Score=38.59  Aligned_cols=58  Identities=22%  Similarity=0.351  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+-.+..|.++.+.|++++|+.++++++.-+     |..+--...-..+|.+++.+|+++||+
T Consensus        38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~~~~~~l~~f~Al~L~~~gr~~eAl   95 (120)
T PF12688_consen   38 RRALIQLASTLRNLGRYDEALALLEEALEEF-----PDDELNAALRVFLALALYNLGRPKEAL   95 (120)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHHCCCHHHHH
Confidence            4567788999999999999999999887422     221114444456889999999999999

>TIGR00540 hemY_coli hemY protein

Probab=93.43  E-value=0.2  Score=46.67  Aligned_cols=65  Identities=9%  Similarity=0.043  Sum_probs=48.1

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .|..+++.-+...|++++.+|++++|.+.|+.+.++-.      +|+... +..||.++.++|+.++|.    .++
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~------~p~~~~-~~~La~ll~~~g~~~~A~----~~~  393 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE------QLDAND-LAMAADAFDQAGDKAEAA----AMR  393 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc------CCCHHH-HHHHHHHHHHcCCHHHHH----HHH
Confidence            44455334555679999999999999999984333221      555544 448999999999999999    776

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.41  E-value=0.23  Score=29.30  Aligned_cols=30  Identities=30%  Similarity=0.306  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARM  158 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~  158 (222)
                      +-.+..|.++...|++++|.+.|.+++.+-
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            456778999999999999999999999874

...

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=93.29  E-value=0.28  Score=46.48  Aligned_cols=60  Identities=25%  Similarity=0.237  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchH
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSV  194 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~  194 (222)
                      ++.-+..+|+.++++|+++.|++..++|..+        -|+--.++..||.+|-.+||+++|+.-.+
T Consensus       233 d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  233 DSELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            3666777888899999999999999888865        58888999999999999999999984433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=93.00  E-value=0.092  Score=53.80  Aligned_cols=82  Identities=16%  Similarity=0.141  Sum_probs=60.4

Q ss_pred             cccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhh
Q 027539          119 KHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQC  198 (222)
Q Consensus       119 K~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~  198 (222)
                      ++..+.+.+..=+++.+..+.+-|++++|+++|....+--.  ++     .+..+..+|+.|..+|.+++|+    +|+ 
T Consensus       405 ~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~--~~-----~~~vw~~~a~c~~~l~e~e~A~----e~y-  472 (895)
T KOG2076|consen  405 EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG--YQ-----NAFVWYKLARCYMELGEYEEAI----EFY-  472 (895)
T ss_pred             HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc--cc-----chhhhHHHHHHHHHHhhHHHHH----HHH-
Confidence            34445667777788889999999999999988877654221  11     1678899999999999999999    777 


Q ss_pred             hhCCCCceEEEeeeechhc
Q 027539          199 QLGDSKSSIIITSFCTEVL  217 (222)
Q Consensus       199 ~~~~~~~a~~i~e~~~~~~  217 (222)
                           +++++..--++++.
T Consensus       473 -----~kvl~~~p~~~D~R  486 (895)
T KOG2076|consen  473 -----EKVLILAPDNLDAR  486 (895)
T ss_pred             -----HHHHhcCCCchhhh
Confidence                 66666555444443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.89  E-value=0.19  Score=47.48  Aligned_cols=65  Identities=11%  Similarity=0.048  Sum_probs=56.2

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH-------HHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTA-------STYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA-------~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..|...=|.|..+..+|++..|...|..|+..++...+..--+..       .|++|||++|.++++|.+|+
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai  277 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAI  277 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHH
Confidence            456677788999999999999999999999999987776554443       58999999999999999999

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.64  E-value=0.42  Score=41.38  Aligned_cols=80  Identities=19%  Similarity=0.182  Sum_probs=63.0

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHHcCChhhHhhchHHhhh
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPY-----HRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQC  198 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~-----HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~  198 (222)
                      .+..|.-.+..|=.+-.+|+.+....++.+|+..|++.|-..     --+-++.+..+|-+++.+|++++|.   ..|..
T Consensus       114 ~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~---~~fs~  190 (214)
T PF09986_consen  114 PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAK---RWFSR  190 (214)
T ss_pred             HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHH---HHHHH
Confidence            346788888889999999999999999999999999988433     2355788889999999999999999   33333


Q ss_pred             hhCCCCce
Q 027539          199 QLGDSKSS  206 (222)
Q Consensus       199 ~~~~~~~a  206 (222)
                      -.|+.+.+
T Consensus       191 vi~~~~~s  198 (214)
T PF09986_consen  191 VIGSKKAS  198 (214)
T ss_pred             HHcCCCCC
Confidence            33444433

>PRK15331 chaperone protein SicA; Provisional

Probab=92.51  E-value=0.44  Score=40.09  Aligned_cols=59  Identities=17%  Similarity=0.140  Sum_probs=48.8

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +..+-+.++..|-.+.++|++++|..+|. .|.    +|++..|+.   ..-||.++..+|+|++|+
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~-~L~----~~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai   91 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFR-FLC----IYDFYNPDY---TMGLAAVCQLKKQFQKAC   91 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHH----HhCcCcHHH---HHHHHHHHHHHHHHHHHH
Confidence            44556777888899999999999999984 333    378888885   688999999999999999

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.32  E-value=0.082  Score=51.45  Aligned_cols=57  Identities=21%  Similarity=0.229  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..|-++=+.|..+..+|+|++|+.+|++|+.+-        |+-...|+|.|..|-.+||+.+-+
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~--------p~epiFYsNraAcY~~lgd~~~Vi  169 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC--------PDEPIFYSNRAACYESLGDWEKVI  169 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC--------CCCchhhhhHHHHHHHHhhHHHHH
Confidence            456677778999999999999999999999764        333789999999999999998877

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=92.07  E-value=0.28  Score=49.58  Aligned_cols=54  Identities=11%  Similarity=-0.082  Sum_probs=43.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .+.|.+...++++++|+..+.+++.        .-|+-+..++++|.++.++|++++|+    +.+
T Consensus       124 ~~~a~~L~~~~~~eeA~~~~~~~l~--------~~p~~~~~~~~~a~~l~~~g~~~~A~----~~y  177 (694)
T PRK15179        124 ILMLRGVKRQQGIEAGRAEIELYFS--------GGSSSAREILLEAKSWDEIGQSEQAD----ACF  177 (694)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHHHHhcchHHHH----HHH
Confidence            3347777888888888888777774        56888888899999999999999998    666

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.03  E-value=0.34  Score=30.92  Aligned_cols=27  Identities=22%  Similarity=0.176  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHH
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALAR  157 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i  157 (222)
                      .+..|+.+..+|++++|..+|++++..
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455699999999999999999999974

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=91.99  E-value=0.35  Score=50.18  Aligned_cols=81  Identities=14%  Similarity=0.085  Sum_probs=67.4

Q ss_pred             cccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchH
Q 027539          115 VPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSV  194 (222)
Q Consensus       115 ~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~  194 (222)
                      .=+.|-..+...|++..++.|+++.++.-.. ++..|+.|+.+++..-+++-||+   +|++|..++.+|+++.|.    
T Consensus       401 ~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~---LNNvaslhf~~g~~~~A~----  472 (1018)
T KOG2002|consen  401 NVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEV---LNNVASLHFRLGNIEKAL----  472 (1018)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHH---HHhHHHHHHHhcChHHHH----
Confidence            3356667777888888999999999877555 59999999999999988888775   789999999999999999    


Q ss_pred             HhhhhhCCCCceEEE
Q 027539          195 VFQCQLGDSKSSIII  209 (222)
Q Consensus       195 ~~~~~~~~~~~a~~i  209 (222)
                      +.+      ++|+.+
T Consensus       473 ~~f------~~A~~~  481 (1018)
T KOG2002|consen  473 EHF------KSALGK  481 (1018)
T ss_pred             HHH------HHHhhh
Confidence            666      566554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=91.95  E-value=0.38  Score=48.55  Aligned_cols=58  Identities=9%  Similarity=0.060  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ....|+++..+|++++|..++.+++...++ .|. .++.+..+..+|.+|..+|+.++|.
T Consensus       694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~-~g~-~~~~a~~~~~la~a~~~~G~~~~A~  751 (903)
T PRK04841        694 WRNIARAQILLGQFDEAEIILEELNENARS-LRL-MSDLNRNLILLNQLYWQQGRKSEAQ  751 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCc-hHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            456789999999999999999999998655 554 3589999999999999999999999

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=91.80  E-value=0.29  Score=49.44  Aligned_cols=58  Identities=16%  Similarity=0.088  Sum_probs=41.9

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|.++++..  ..|.++..+|++++|++++.+++..        +|+-+. +..||.++..+|++++|+
T Consensus        79 ~P~~~~a~~--~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al  136 (765)
T PRK10049         79 EPQNDDYQR--GLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDEL  136 (765)
T ss_pred             CCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHH
Confidence            345555543  4577888888888888888887765        444455 778888888888888887

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=91.55  E-value=0.73  Score=45.09  Aligned_cols=72  Identities=25%  Similarity=0.223  Sum_probs=60.0

Q ss_pred             CCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc
Q 027539          104 NPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHT  183 (222)
Q Consensus       104 ~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~  183 (222)
                      .+|...|       -....|.++..-.++=.|+.+...|++++|++++++|+..        -|.....|..-|++|-++
T Consensus       177 ~~~~~~~-------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~  241 (517)
T PF12569_consen  177 GSFSNGD-------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHA  241 (517)
T ss_pred             CCCCCcc-------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHC
Confidence            4666666       3345556666666667799999999999999999999976        588899999999999999


Q ss_pred             CChhhHh
Q 027539          184 GDFNQVR  190 (222)
Q Consensus       184 Gd~~eAi  190 (222)
                      |++.+|.
T Consensus       242 G~~~~Aa  248 (517)
T PF12569_consen  242 GDLKEAA  248 (517)
T ss_pred             CCHHHHH
Confidence            9999999

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=91.35  E-value=0.44  Score=48.17  Aligned_cols=53  Identities=15%  Similarity=-0.079  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -....|..+..+|++++|++++.+++..        +|+-...+..+|.++..+|++++|+
T Consensus       361 a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~  413 (765)
T PRK10049        361 GQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAE  413 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            3455689999999999999999999876        4555678999999999999999999

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=91.15  E-value=0.22  Score=43.38  Aligned_cols=92  Identities=15%  Similarity=0.108  Sum_probs=41.7

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----------HhCCC----------------ChHHHHHHHHHHHH
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIA----------VCGPY----------------HRTTASTYSLLAVV  179 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eq----------V~G~~----------------HpevA~~y~~LA~v  179 (222)
                      .++.-++..|..+...|+.++|++.|.+|+.+.-.          ++-..                .|+-...+..+|.+
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~  223 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA  223 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            44555667789999999999999999998873210          00000                01112234567777


Q ss_pred             HHHcCChhhHhhch-----------------HHhhhhhCCCCceEEEeeeechhc
Q 027539          180 LYHTGDFNQVRQSS-----------------VVFQCQLGDSKSSIIITSFCTEVL  217 (222)
Q Consensus       180 y~~~Gd~~eAi~~~-----------------~~~~~~~~~~~~a~~i~e~~~~~~  217 (222)
                      |..+|++++|+.+.                 .....+.|+.+.|..+..+++.-|
T Consensus       224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l  278 (280)
T PF13429_consen  224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL  278 (280)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred             hcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            77778877777221                 122235666777777666665443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=91.06  E-value=0.53  Score=48.49  Aligned_cols=60  Identities=18%  Similarity=0.282  Sum_probs=52.7

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhc
Q 027539          125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQS  192 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~  192 (222)
                      ++.++.++-.|......|++++|.+++.|.+..        -|-....|..||.||-++||.+.|..|
T Consensus       136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~  195 (895)
T KOG2076|consen  136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNF  195 (895)
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHH
Confidence            467889999999999999999999999998853        566678999999999999999999844

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.87  E-value=0.54  Score=35.01  Aligned_cols=53  Identities=15%  Similarity=0.112  Sum_probs=43.5

Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          138 ALDKGKLEDAVNYGTKALARMIAVCGPY-HRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       138 ~l~qG~~e~A~~L~~eAL~i~eqV~G~~-HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+..|++.+|.+.+.+......+-.+.. ....+.+..++|.+++..|++++|+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~   61 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEAL   61 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            5678999999999999998876655544 2346667888999999999999999

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=90.69  E-value=0.69  Score=41.49  Aligned_cols=59  Identities=25%  Similarity=0.333  Sum_probs=40.4

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ...|.+-+...|+.++..|++.+|...+.+|..        .-|.=++.++.||.+|.+.|++++|.
T Consensus        96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--------l~p~d~~~~~~lgaaldq~Gr~~~Ar  154 (257)
T COG5010          96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--------LAPTDWEAWNLLGAALDQLGRFDEAR  154 (257)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--------cCCCChhhhhHHHHHHHHccChhHHH
Confidence            334444454568888888888888888877774        34556666777777777777777766

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=90.55  E-value=0.48  Score=39.51  Aligned_cols=54  Identities=6%  Similarity=-0.098  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +-.+.-|-++-.+|++++|++.|..|+.+        .|+=+..+.++|.+|..+|+.++|.
T Consensus        70 ~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--------~~ddp~~~~~ag~c~L~lG~~~~A~  123 (157)
T PRK15363         70 DYWFRLGECCQAQKHWGEAIYAYGRAAQI--------KIDAPQAPWAAAECYLACDNVCYAI  123 (157)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCchHHHHHHHHHHHcCCHHHHH
Confidence            44556699999999999999999998764        4566678999999999999999999

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=90.51  E-value=0.71  Score=40.46  Aligned_cols=49  Identities=10%  Similarity=-0.036  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG  184 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G  184 (222)
                      .+..|.++..+|++++|...+++.+..+     |.||++..++..+|..++.+|
T Consensus        72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~~~~~~a~Y~~g~~~~~~~  120 (243)
T PRK10866         72 QLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHPNIDYVLYMRGLTNMALD  120 (243)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCCCchHHHHHHHHHhhhhcc
Confidence            5678999999999999999999998887     899999999999999987776

>smart00028 TPR Tetratricopeptide repeats

Probab=90.47  E-value=0.14  Score=27.63  Aligned_cols=20  Identities=15%  Similarity=0.265  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHcCChhhHh
Q 027539          171 STYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       171 ~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .++.++|.+|..+|++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~   21 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEAL   21 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHH
Confidence            56889999999999999999

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=90.26  E-value=1  Score=31.66  Aligned_cols=54  Identities=11%  Similarity=0.105  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHH
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGP-YHRTTASTYSLLAVVL  180 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~-~HpevA~~y~~LA~vy  180 (222)
                      .|.++...|...-++|++++|+++|.+|+..+.+.... -.|..-..+..-..-|
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~y   58 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEY   58 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            46778888999999999999999999999999988753 3555555555444433

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=90.16  E-value=0.43  Score=47.11  Aligned_cols=77  Identities=21%  Similarity=0.151  Sum_probs=59.9

Q ss_pred             ccccccccCch-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchH
Q 027539          116 PVCKHVGCTSA-DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSV  194 (222)
Q Consensus       116 PvVK~~~p~s~-~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~  194 (222)
                      -++|...+.++ -.-.+.+.|.++...+++++|+..|++||.+        -|--+..|..+|-+|..+|.++.|+    
T Consensus       442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Ai----  509 (611)
T KOG1173|consen  442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAI----  509 (611)
T ss_pred             HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHH----
Confidence            34555555554 2223456689999999999999999999965        4556788999999999999999999    


Q ss_pred             HhhhhhCCCCceEEEe
Q 027539          195 VFQCQLGDSKSSIIIT  210 (222)
Q Consensus       195 ~~~~~~~~~~~a~~i~  210 (222)
                      +++      -+||.|.
T Consensus       510 d~f------hKaL~l~  519 (611)
T KOG1173|consen  510 DHF------HKALALK  519 (611)
T ss_pred             HHH------HHHHhcC
Confidence            888      4777664

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=90.13  E-value=0.28  Score=42.79  Aligned_cols=62  Identities=21%  Similarity=0.185  Sum_probs=36.7

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .|.++.....+  |.++...|++++|+++|.+++.        .+|+=...+..+|.++...|++++|.    ...
T Consensus       210 ~~~~~~~~~~l--a~~~~~lg~~~~Al~~~~~~~~--------~~p~d~~~~~~~a~~l~~~g~~~~A~----~~~  271 (280)
T PF13429_consen  210 APDDPDLWDAL--AAAYLQLGRYEEALEYLEKALK--------LNPDDPLWLLAYADALEQAGRKDEAL----RLR  271 (280)
T ss_dssp             -HTSCCHCHHH--HHHHHHHT-HHHHHHHHHHHHH--------HSTT-HHHHHHHHHHHT----------------
T ss_pred             CcCHHHHHHHH--HHHhcccccccccccccccccc--------cccccccccccccccccccccccccc----ccc
Confidence            35555555554  8889999999999999998774        35666677779999999999999999    776

>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5

Probab=90.11  E-value=1  Score=37.95  Aligned_cols=44  Identities=27%  Similarity=0.190  Sum_probs=37.3

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT  169 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev  169 (222)
                      ..-+.+-+.--.+..+|+++.|.++.++||.-+++.+|..||+|
T Consensus       138 ~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v  181 (181)
T PF09311_consen  138 ARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV  181 (181)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence            55566766677799999999999999999999999999999996

This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.03  E-value=1.1  Score=33.49  Aligned_cols=62  Identities=11%  Similarity=0.154  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhch
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSS  193 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~  193 (222)
                      .++.-+|.|--..++.+.++|+.....+|...-+     -|+--..+..|+++|...|+|.+++.|+
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677889998888999999999888888876543     4577788889999999999999999554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.40  E-value=5.1  Score=29.33  Aligned_cols=48  Identities=19%  Similarity=0.227  Sum_probs=37.8

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--HhCCCChHHHHHHH
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIA--VCGPYHRTTASTYS  174 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eq--V~G~~HpevA~~y~  174 (222)
                      .|.++...|--.-++|++++|+.+|.+|+..+..  .+|...|..-..++
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir   54 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQ   54 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            4566777777888899999999999999999998  66655555555443

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.38  E-value=0.38  Score=27.63  Aligned_cols=20  Identities=25%  Similarity=0.250  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHcCChhhHh
Q 027539          171 STYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       171 ~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+..+||.++..+||+++|.
T Consensus         2 ~a~~~la~~~~~~G~~~eA~   21 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAE   21 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHH
Confidence            46789999999999999998

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.13  E-value=3.8  Score=29.90  Aligned_cols=57  Identities=9%  Similarity=0.136  Sum_probs=45.4

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHH
Q 027539          125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVLY  181 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy~  181 (222)
                      +..|.+++..|...-..|++++|+.+|.+|+..+.++. +.-.|..-..|..--.-|.
T Consensus         3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~   60 (77)
T cd02683           3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYM   60 (77)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            45677888889889999999999999999999999965 6666677776665544443

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=88.78  E-value=2.3  Score=37.65  Aligned_cols=66  Identities=21%  Similarity=0.167  Sum_probs=57.2

Q ss_pred             chhHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHH-H-hCCCChHH----HHHHHHHHHHHHHcCChhhHh
Q 027539          125 SADGRTLLESSKIALDKG-KLEDAVNYGTKALARMIA-V-CGPYHRTT----ASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG-~~e~A~~L~~eAL~i~eq-V-~G~~Hpev----A~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ...++-+++.|...+.++ ++++|...+++|..+.++ . .+..||+.    ..+++.||++|...|+++...
T Consensus        32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~  104 (278)
T PF08631_consen   32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVE  104 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence            467888999999999999 999999999999999988 3 35777777    789999999999999876544

It is also involved in sporulation [].

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.65  E-value=4.5  Score=29.01  Aligned_cols=55  Identities=11%  Similarity=0.075  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHH
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVLY  181 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy~  181 (222)
                      .|.+++..|.-.-..|++++|+++|.+|+..+.+.. ..-.|.....+..-..=|.
T Consensus         5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl   60 (75)
T cd02678           5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYL   60 (75)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            466788888888899999999999999999999976 5567777777776666554

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=88.46  E-value=1.5  Score=40.68  Aligned_cols=56  Identities=18%  Similarity=0.179  Sum_probs=43.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .++.++.+|+++.|...+.+.+..     .|.||+   .+..++.+|..+||+++|+...+...
T Consensus       159 ~a~l~l~~g~~~~Al~~l~~~~~~-----~P~~~~---al~ll~~~~~~~gdw~~a~~~l~~l~  214 (398)
T PRK10747        159 RVRIQLARNENHAARHGVDKLLEV-----APRHPE---VLRLAEQAYIRTGAWSSLLDILPSMA  214 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHH---HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            478888888888888877776543     366664   46778999999999999996666665

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=88.39  E-value=1.2  Score=30.03  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=25.9

Q ss_pred             cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 027539          123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALAR  157 (222)
Q Consensus       123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i  157 (222)
                      |..+++  .+..|.++..+|++++|.++|.+++.+
T Consensus        28 P~~~~a--~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen   28 PDNPEA--WYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             TTHHHH--HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            554444  555699999999999999999999865

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=88.35  E-value=0.66  Score=43.96  Aligned_cols=69  Identities=16%  Similarity=0.145  Sum_probs=54.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh-----------------hchHHh
Q 027539          134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR-----------------QSSVVF  196 (222)
Q Consensus       134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi-----------------~~~~~~  196 (222)
                      .+++++..++-.+|+.++++++        ..+|.-+.-+...|..+...|+++.|+                 ......
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL--------~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~  277 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEAL--------KENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAEC  277 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            3788888888888888888888        335556888899999999999999998                 334456


Q ss_pred             hhhhCCCCceEEEe
Q 027539          197 QCQLGDSKSSIIIT  210 (222)
Q Consensus       197 ~~~~~~~~~a~~i~  210 (222)
                      |.++||+++|+..-
T Consensus       278 Yi~~~d~e~ALlaL  291 (395)
T PF09295_consen  278 YIQLGDFENALLAL  291 (395)
T ss_pred             HHhcCCHHHHHHHH
Confidence            77888888887543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=88.25  E-value=0.46  Score=45.50  Aligned_cols=59  Identities=20%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+.+|.++.+.|..+..+..|.+|+..|+.|+..        -|+-|..|.+=|.+|...|+|++|.
T Consensus        45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~  103 (486)
T KOG0550|consen   45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEAL  103 (486)
T ss_pred             HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcc
Confidence            4578999999999999999999999999999964        5677999999999999999999988

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=87.99  E-value=1  Score=44.18  Aligned_cols=63  Identities=22%  Similarity=0.264  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--------------------HHH------hCCCChHHHHHHHHHHHHHH
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARM--------------------IAV------CGPYHRTTASTYSLLAVVLY  181 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~--------------------eqV------~G~~HpevA~~y~~LA~vy~  181 (222)
                      +.++-+.|...++.|++++|+.+|.+|+.+-                    +..      +-.+.|+-+..|+.++..+.
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF   81 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence            5677889999999999999999999998741                    111      23678999999999999999


Q ss_pred             HcCChhhHh
Q 027539          182 HTGDFNQVR  190 (222)
Q Consensus       182 ~~Gd~~eAi  190 (222)
                      -+|+|++|+
T Consensus        82 ~lg~~~eA~   90 (539)
T KOG0548|consen   82 GLGDYEEAI   90 (539)
T ss_pred             hcccHHHHH
Confidence            999999998

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=87.95  E-value=0.35  Score=37.98  Aligned_cols=90  Identities=17%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC--------------CCChHHHHHHHHHHHHHHHcCChhhHhhc--
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG--------------PYHRTTASTYSLLAVVLYHTGDFNQVRQS--  192 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G--------------~~HpevA~~y~~LA~vy~~~Gd~~eAi~~--  192 (222)
                      +.+...|......|..+.+.+.+.+++.+|.--+-              .++.....++..++..+...|++++|+..  
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            34455677788889999999999999998862221              12344567888899999999999999822  


Q ss_pred             ---------------hHHhhhhhCCCCceEEEeeeechhcc
Q 027539          193 ---------------SVVFQCQLGDSKSSIIITSFCTEVLI  218 (222)
Q Consensus       193 ---------------~~~~~~~~~~~~~a~~i~e~~~~~~~  218 (222)
                                     ....+.+.|+...|+..++++...|.
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~  127 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR  127 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence                           22333456777777777776665554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=87.90  E-value=1.3  Score=46.24  Aligned_cols=84  Identities=19%  Similarity=0.223  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHceeeeccccCCCCCCCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539           79 ISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARM  158 (222)
Q Consensus        79 ~~lLR~ic~K~GIQl~~rdY~f~~~~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~  158 (222)
                      +..--....+-|+|+..|.|.-+..+|                     ++-..+  +..+.-+|+++.+..+...|+.--
T Consensus       244 l~~~d~~s~~~~~~ll~~ay~~n~~nP---------------------~~l~~L--An~fyfK~dy~~v~~la~~ai~~t  300 (1018)
T KOG2002|consen  244 LNFNDSDSYKKGVQLLQRAYKENNENP---------------------VALNHL--ANHFYFKKDYERVWHLAEHAIKNT  300 (1018)
T ss_pred             HHccchHHHHHHHHHHHHHHhhcCCCc---------------------HHHHHH--HHHHhhcccHHHHHHHHHHHHHhh
Confidence            333344678899999999987666554                     121222  455555666666666665555443


Q ss_pred             HHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          159 IAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       159 eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                           ..-+..|..|..+|+.|+.+|+|++|-
T Consensus       301 -----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~  327 (1018)
T KOG2002|consen  301 -----ENKSIKAESFYQLGRSYHAQGDFEKAF  327 (1018)
T ss_pred             -----hhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence                 233455556666666666666666665

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.87  E-value=1.5  Score=28.03  Aligned_cols=33  Identities=24%  Similarity=0.215  Sum_probs=29.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 027539          132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGP  164 (222)
Q Consensus       132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~  164 (222)
                      .-.|-+.+..+++++|.+=|.++|.|.++.+.+
T Consensus         5 ~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~   37 (38)
T PF10516_consen    5 DLLGEISLENENFEQAIEDYEKALEIQEELLPP   37 (38)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            334999999999999999999999999998765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=87.76  E-value=1  Score=40.34  Aligned_cols=71  Identities=15%  Similarity=0.067  Sum_probs=57.4

Q ss_pred             cccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhch
Q 027539          115 VPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSS  193 (222)
Q Consensus       115 ~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~  193 (222)
                      -++-|-..+..+|++-..-.|-.+.+-|+.++|-.-|.||+.+.-+     -   ...++||++.|+-.||++.|..+.
T Consensus       121 ~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-----~---p~~~nNlgms~~L~gd~~~A~~ll  191 (257)
T COG5010         121 SVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-----E---PSIANNLGMSLLLRGDLEDAETLL  191 (257)
T ss_pred             HHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-----C---chhhhhHHHHHHHcCCHHHHHHHH
Confidence            3445566667777777777799999999999999999999988643     3   356789999999999999999443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.74  E-value=0.81  Score=26.40  Aligned_cols=29  Identities=17%  Similarity=0.366  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARM  158 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~  158 (222)
                      .++..|.++...|+.++|.+.|++.+.-|
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            46788999999999999999999987643

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=87.63  E-value=0.59  Score=43.61  Aligned_cols=85  Identities=19%  Similarity=0.151  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHH--------------HHHHHHH---------------hC--CCChHHHHHHHHHHH
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKA--------------LARMIAV---------------CG--PYHRTTASTYSLLAV  178 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eA--------------L~i~eqV---------------~G--~~HpevA~~y~~LA~  178 (222)
                      .+.+.|+-++..|.++.|.++|.+.              +.||++.               .|  ++.-++|.+|.-||.
T Consensus       109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq  188 (389)
T COG2956         109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Confidence            4667788899999999888777643              3355421               22  567899999999999


Q ss_pred             HHHHcCChhhHh-----------------hchHHhhhhhCCCCceEEEeeeec
Q 027539          179 VLYHTGDFNQVR-----------------QSSVVFQCQLGDSKSSIIITSFCT  214 (222)
Q Consensus       179 vy~~~Gd~~eAi-----------------~~~~~~~~~~~~~~~a~~i~e~~~  214 (222)
                      -+..-.+++.|.                 +..+....+.|||.+|+...|++.
T Consensus       189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~  241 (389)
T COG2956         189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL  241 (389)
T ss_pred             HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence            999999998877                 444555667777777777776653

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=87.61  E-value=0.25  Score=42.77  Aligned_cols=48  Identities=21%  Similarity=0.105  Sum_probs=40.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          142 GKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       142 G~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -.+++|++-|.=|+-. -++.|.-|...|..+..||.+|..+|+.++..
T Consensus        91 Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~  138 (214)
T PF09986_consen   91 RTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRLAWLYRDLGDEENEK  138 (214)
T ss_pred             CCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHhhccCCHHHHH
Confidence            3688999999777766 56788899999999999999999999966655

>TIGR00540 hemY_coli hemY protein

Probab=87.56  E-value=1.6  Score=40.57  Aligned_cols=56  Identities=18%  Similarity=0.235  Sum_probs=45.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .+++++++|+++.|.+.+.+.+..     +|.||+   .+..++.+|..+||+++|+...+.+.
T Consensus       159 ~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~~---~l~ll~~~~~~~~d~~~a~~~l~~l~  214 (409)
T TIGR00540       159 RTRILLAQNELHAARHGVDKLLEM-----APRHKE---VLKLAEEAYIRSGAWQALDDIIDNMA  214 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            388888999999888887766654     377775   47789999999999999997666666

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=87.53  E-value=1.3  Score=45.67  Aligned_cols=58  Identities=14%  Similarity=0.138  Sum_probs=46.6

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ......+...|+.+.++|++++|+++|++++..        .|+-...+..|+++|..+|+.++|+
T Consensus        99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl  156 (822)
T PRK14574         99 NISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVL  156 (822)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHH
Confidence            344566666799999999999999999999864        3444555567899999999999999

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=87.16  E-value=1.5  Score=38.46  Aligned_cols=47  Identities=19%  Similarity=0.084  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-cCChhhHh
Q 027539          144 LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH-TGDFNQVR  190 (222)
Q Consensus       144 ~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~-~Gd~~eAi  190 (222)
                      .+.|.+.|++|+.+-.+-.+|.||---....|.|..||. +|+.++|+
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~  189 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAI  189 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            478999999999999999999999999999999999876 99999999

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.06  E-value=3.8  Score=30.04  Aligned_cols=55  Identities=18%  Similarity=0.132  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHHH
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTA-STYSLLAVVLY  181 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA-~~y~~LA~vy~  181 (222)
                      .|..++..|-..-..|++++|++||.+|+..+....++.=+++. .-+..+|.-|.
T Consensus         5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ekn~~~k~~i~~K~~~~a~~yl   60 (75)
T cd02680           5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINTSNETMDQALQTKLKQLARQAL   60 (75)
T ss_pred             HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence            46677777777778899999999999999999986555544433 55555665444

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.98  E-value=6.2  Score=28.61  Aligned_cols=56  Identities=9%  Similarity=0.021  Sum_probs=46.0

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHH
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVLY  181 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy~  181 (222)
                      ..|.+++..|--.-..|++++|+.+|.+|+..+..+. +.-.|..-..+..-..=|.
T Consensus         4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl   60 (75)
T cd02684           4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYV   60 (75)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            3567788888888889999999999999999999966 7888888777776555554

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=86.88  E-value=0.49  Score=47.21  Aligned_cols=20  Identities=10%  Similarity=0.140  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHcCChhhHh
Q 027539          171 STYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       171 ~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .++.=|++||.++|+++.|.
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae  509 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAE  509 (638)
T ss_pred             HHHHhhhhheeccchhhHHH
Confidence            44445666666666666666

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=86.84  E-value=2.4  Score=38.66  Aligned_cols=66  Identities=18%  Similarity=0.185  Sum_probs=52.6

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH------------------------------HHHHHhCCCChHHHHHH
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALA------------------------------RMIAVCGPYHRTTASTY  173 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~------------------------------i~eqV~G~~HpevA~~y  173 (222)
                      ...|++.-+-.|++++.+|+.+.|..=|.+|+.                              ++.++..-.|-++ ++.
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i-ral  230 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI-RAL  230 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH-HHH
Confidence            345667777779999999999999988888776                              4555665556555 567


Q ss_pred             HHHHHHHHHcCChhhHh
Q 027539          174 SLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       174 ~~LA~vy~~~Gd~~eAi  190 (222)
                      +.||.-++.+|||.+|+
T Consensus       231 ~lLA~~afe~g~~~~A~  247 (287)
T COG4235         231 SLLAFAAFEQGDYAEAA  247 (287)
T ss_pred             HHHHHHHHHcccHHHHH
Confidence            88999999999999999

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=86.79  E-value=0.28  Score=33.40  Aligned_cols=22  Identities=18%  Similarity=0.486  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHcCChhhHh
Q 027539          169 TASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       169 vA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|..+.++|..++.+|++++|+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~   23 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAI   23 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHH
Confidence            4788999999999999999999

...

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=86.74  E-value=2.1  Score=40.05  Aligned_cols=68  Identities=13%  Similarity=0.092  Sum_probs=51.6

Q ss_pred             ccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHh
Q 027539          120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVF  196 (222)
Q Consensus       120 ~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~  196 (222)
                      ..+|+|.-|.-++  |++.+.+|+++.|+       ..++.|.-..|--+......|...|.++|+.++.+.|...+
T Consensus       208 qa~~~cvRAsi~l--G~v~~~~g~y~~AV-------~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~  275 (389)
T COG2956         208 QADKKCVRASIIL--GRVELAKGDYQKAV-------EALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA  275 (389)
T ss_pred             hhCccceehhhhh--hHHHHhccchHHHH-------HHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3456666665554  88888888877554       55566666788888899999999999999999999555544

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=86.46  E-value=4.4  Score=30.03  Aligned_cols=55  Identities=24%  Similarity=0.157  Sum_probs=44.8

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVL  180 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy  180 (222)
                      .......++..|.++...|.+++|+..++||+.+-++.  ..+.-++.++..++.+.
T Consensus        37 ~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~~~~~l~   91 (94)
T PF12862_consen   37 NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALSWLANLL   91 (94)
T ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHh
Confidence            34667778999999999999999999999999998885  34566777777776654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=86.44  E-value=0.43  Score=45.09  Aligned_cols=54  Identities=19%  Similarity=0.213  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .++-|.|..+..||+|+||++.|+.+++++        |--+..|-|-|+.|.++..|+.|.
T Consensus        98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE  151 (536)
T KOG4648|consen   98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAE  151 (536)
T ss_pred             HHHHHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHH
Confidence            346688999999999999999999998764        222334556666666666666554

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.23  E-value=0.81  Score=41.91  Aligned_cols=60  Identities=12%  Similarity=0.045  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +..+.|...-.||........|++|+..|.+.. .+.|.-|..|.+=|.+|.++|.+++|+
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI-~l~P~nAVyycNRAAAy~~Lg~~~~AV  135 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAI-ELDPTNAVYYCNRAAAYSKLGEYEDAV  135 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhcchHHHH
Confidence            667778889999999999999999999999877 577888999999999999999999999

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=86.18  E-value=1.5  Score=42.92  Aligned_cols=57  Identities=25%  Similarity=0.300  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQ  191 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~  191 (222)
                      .|.+.-+.|.-+...|++..|+..|.||+..        .|+-+..|+|.|..|-.+|.+++|+.
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~  413 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALK  413 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHH
Confidence            3778888899999999999999999997753        39999999999999999999999993

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=85.41  E-value=1.6  Score=42.35  Aligned_cols=76  Identities=20%  Similarity=0.116  Sum_probs=51.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHH--------------------------HHhCCCChHHHHHHHHHHHHHHHcCChhh
Q 027539          135 SKIALDKGKLEDAVNYGTKALARMI--------------------------AVCGPYHRTTASTYSLLAVVLYHTGDFNQ  188 (222)
Q Consensus       135 g~~~l~qG~~e~A~~L~~eAL~i~e--------------------------qV~G~~HpevA~~y~~LA~vy~~~Gd~~e  188 (222)
                      |.+++..|+.++|.+.+.+|+...-                          +=+-...|+-+..|..||+.|..+|+..+
T Consensus       347 ~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~  426 (484)
T COG4783         347 GDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE  426 (484)
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence            6667777777777777766665211                          11224567778889999999999999888


Q ss_pred             HhhchHHhhhhhCCCCceEEEe
Q 027539          189 VRQSSVVFQCQLGDSKSSIIIT  210 (222)
Q Consensus       189 Ai~~~~~~~~~~~~~~~a~~i~  210 (222)
                      |..---|.+--.|+++.|++-.
T Consensus       427 a~~A~AE~~~~~G~~~~A~~~l  448 (484)
T COG4783         427 ALLARAEGYALAGRLEQAIIFL  448 (484)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHH
Confidence            8755455554567777776543

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.17  E-value=9.7  Score=26.98  Aligned_cols=55  Identities=11%  Similarity=0.121  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHH
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVLY  181 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy~  181 (222)
                      .|.++...|...-..|++++|+++|.+|+..+.++. ..-.|..-..+..-..-|.
T Consensus         5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl   60 (75)
T cd02656           5 QAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYL   60 (75)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            466677778778888999999999999999999977 3445666666665555554

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.06  E-value=3  Score=37.58  Aligned_cols=52  Identities=25%  Similarity=0.221  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-.|..++++|++++|.+++.+|+.     -.|.+|+   ++.|++.+..++|+..++.
T Consensus       204 lng~A~~~l~~~~~~eAe~~L~~al~-----~~~~~~d---~LaNliv~~~~~gk~~~~~  255 (290)
T PF04733_consen  204 LNGLAVCHLQLGHYEEAEELLEEALE-----KDPNDPD---TLANLIVCSLHLGKPTEAA  255 (290)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHCC-----C-CCHHH---HHHHHHHHHHHTT-TCHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH-----hccCCHH---HHHHHHHHHHHhCCChhHH
Confidence            44568899999999999999999875     2355655   6789999999999995554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.00  E-value=2.8  Score=30.76  Aligned_cols=37  Identities=22%  Similarity=0.203  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG  163 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G  163 (222)
                      +|..+...|--+-++|++++|+.+|++|+..+.++.-
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~   41 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK   41 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            5667777888888999999999999999999998873

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=84.96  E-value=3.1  Score=40.81  Aligned_cols=58  Identities=19%  Similarity=0.125  Sum_probs=43.9

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ++-.+.+++-|-++-.+|++++|++.|-+...|+.+        -+..+..+|.+|-.+.+..+|+
T Consensus       521 asc~ealfniglt~e~~~~ldeald~f~klh~il~n--------n~evl~qianiye~led~aqai  578 (840)
T KOG2003|consen  521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN--------NAEVLVQIANIYELLEDPAQAI  578 (840)
T ss_pred             hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHhhCHHHHH
Confidence            344566888888999999999999888877776653        4566777777777777777777

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.84  E-value=2.5  Score=38.03  Aligned_cols=59  Identities=15%  Similarity=0.169  Sum_probs=50.8

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +++|.--  .|+++..+|++++|-..|..+..-|     |-||-...++..||++...+|..++|.
T Consensus       177 ~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~KApdallKlg~~~~~l~~~d~A~  235 (262)
T COG1729         177 TPNAYYW--LGESLYAQGDYEDAAYIFARVVKDY-----PKSPKAPDALLKLGVSLGRLGNTDEAC  235 (262)
T ss_pred             cchhHHH--HHHHHHhcccchHHHHHHHHHHHhC-----CCCCCChHHHHHHHHHHHHhcCHHHHH
Confidence            4555444  4999999999999999888777733     889999999999999999999999999

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.64  E-value=0.88  Score=44.55  Aligned_cols=76  Identities=14%  Similarity=0.148  Sum_probs=56.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHH-------HHH-------------------hCCCChHHHHHHHHHHHHHHHcC
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARM-------IAV-------------------CGPYHRTTASTYSLLAVVLYHTG  184 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~-------eqV-------------------~G~~HpevA~~y~~LA~vy~~~G  184 (222)
                      ....||+.+--+++++|..-|.+|+++-       .|.                   .-.--|.-..||+..|.++-.++
T Consensus       397 YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq  476 (606)
T KOG0547|consen  397 YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ  476 (606)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHH
Confidence            4567888777777888877777776521       111                   01234777889999999999999


Q ss_pred             ChhhHhhchHHhhhhhCCCCceEEEeeeechh
Q 027539          185 DFNQVRQSSVVFQCQLGDSKSSIIITSFCTEV  216 (222)
Q Consensus       185 d~~eAi~~~~~~~~~~~~~~~a~~i~e~~~~~  216 (222)
                      +|++|+    ..|      ++|+.+..+..++
T Consensus       477 qFd~A~----k~Y------D~ai~LE~~~~~~  498 (606)
T KOG0547|consen  477 QFDKAV----KQY------DKAIELEPREHLI  498 (606)
T ss_pred             hHHHHH----HHH------HHHHhhccccccc
Confidence            999999    888      8999998885554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.64  E-value=5.3  Score=39.90  Aligned_cols=82  Identities=18%  Similarity=0.162  Sum_probs=62.7

Q ss_pred             CCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh--C-----CCChHHHHHHHHHH
Q 027539          105 PFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC--G-----PYHRTTASTYSLLA  177 (222)
Q Consensus       105 ~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~--G-----~~HpevA~~y~~LA  177 (222)
                      +-.+.+.++.+|.|=     ..+=+.+++.|-.++..|+|.+|++++..|+.+...-.  |     .+-.|++.+--.||
T Consensus       157 a~l~~~~~q~v~~v~-----e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla  231 (652)
T KOG2376|consen  157 AALQVQLLQSVPEVP-----EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA  231 (652)
T ss_pred             HhhhHHHHHhccCCC-----cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence            333444556666653     22345678999999999999999999999987765443  2     23367899999999


Q ss_pred             HHHHHcCChhhHhh
Q 027539          178 VVLYHTGDFNQVRQ  191 (222)
Q Consensus       178 ~vy~~~Gd~~eAi~  191 (222)
                      -|+..+|+.+||..
T Consensus       232 yVlQ~~Gqt~ea~~  245 (652)
T KOG2376|consen  232 YVLQLQGQTAEASS  245 (652)
T ss_pred             HHHHHhcchHHHHH
Confidence            99999999999993

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=84.60  E-value=2.1  Score=28.73  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=24.5

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALA  156 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~  156 (222)
                      .|...++.  +..|++++.+|++++|.+++.+++.
T Consensus        21 ~p~~~~~~--~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen   21 NPDNPEAR--LLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             TTTSHHHH--HHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45555554  4569999999999999999887764

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=84.29  E-value=2.2  Score=41.04  Aligned_cols=65  Identities=22%  Similarity=0.150  Sum_probs=51.7

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhc
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQS  192 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~  192 (222)
                      -|.|+.-  ++..||.+..+|+.++|++.|++|+.. ++-...+|   .-|+.-+|..+..++++++|..+
T Consensus       263 yP~s~lf--l~~~gR~~~~~g~~~~Ai~~~~~a~~~-q~~~~Ql~---~l~~~El~w~~~~~~~w~~A~~~  327 (468)
T PF10300_consen  263 YPNSALF--LFFEGRLERLKGNLEEAIESFERAIES-QSEWKQLH---HLCYFELAWCHMFQHDWEEAAEY  327 (468)
T ss_pred             CCCcHHH--HHHHHHHHHHhcCHHHHHHHHHHhccc-hhhHHhHH---HHHHHHHHHHHHHHchHHHHHHH
Confidence            3555444  788999999999999999999998842 23344444   57899999999999999999933

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=83.47  E-value=0.92  Score=28.83  Aligned_cols=20  Identities=15%  Similarity=0.212  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHcCChhhHh
Q 027539          171 STYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       171 ~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+..||.+|..+|++++|+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~   21 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAE   21 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHH
Confidence            46788999999999999999

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=83.21  E-value=0.85  Score=44.04  Aligned_cols=56  Identities=18%  Similarity=0.128  Sum_probs=46.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          133 ESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       133 e~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.|..++-.|+++.|.+.|..++.+-.++ |.---|.-.||+ |+..|+.+.++..||
T Consensus       240 NlgN~hiflg~fe~A~ehYK~tl~LAiel-g~r~vEAQscYS-LgNtytll~e~~kAI  295 (639)
T KOG1130|consen  240 NLGNCHIFLGNFELAIEHYKLTLNLAIEL-GNRTVEAQSCYS-LGNTYTLLKEVQKAI  295 (639)
T ss_pred             ccchhhhhhcccHhHHHHHHHHHHHHHHh-cchhHHHHHHHH-hhhHHHHHHHHHHHH
Confidence            34788888999999999999999988774 555556666665 999999999999999

>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8)

Probab=83.14  E-value=1.6  Score=33.83  Aligned_cols=52  Identities=17%  Similarity=0.143  Sum_probs=40.0

Q ss_pred             ccccccccC--chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 027539          116 PVCKHVGCT--SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT  169 (222)
Q Consensus       116 PvVK~~~p~--s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev  169 (222)
                      ++-++..+.  ...|.+++..|..+..+|+.+.|+-+|.+.+.+++.+  +-|||.
T Consensus        24 ~~~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki--~~Hpdy   77 (115)
T PF08969_consen   24 EFDKNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI--PKHPDY   77 (115)
T ss_dssp             GGSTTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH--CCSCCC
T ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hcCccc
Confidence            333444443  3778999999999999999999999999999999444  778863

It has no known function. ; PDB: 2XZE_B 2A9U_A.

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=82.45  E-value=15  Score=26.00  Aligned_cols=56  Identities=14%  Similarity=0.150  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHH
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG-PYHRTTASTYSLLAVVLY  181 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G-~~HpevA~~y~~LA~vy~  181 (222)
                      ..|.+++..|...-..|++++|+++|.+|+..+.+..- .--|..-..+..-+.-|.
T Consensus         6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl   62 (77)
T smart00745        6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYL   62 (77)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            35677888888888899999999999999999998663 334455555554444443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=82.34  E-value=8.3  Score=38.92  Aligned_cols=79  Identities=19%  Similarity=0.030  Sum_probs=67.5

Q ss_pred             CCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc
Q 027539          104 NPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHT  183 (222)
Q Consensus       104 ~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~  183 (222)
                      .-|+.+|-       +...|.++.+-.++..++.+-..|.++.|++++..|+        ..-|.+..-|..=|+++-+.
T Consensus       354 ~~f~~~D~-------~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI--------dHTPTliEly~~KaRI~kH~  418 (700)
T KOG1156|consen  354 GMFNFLDD-------GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI--------DHTPTLIELYLVKARIFKHA  418 (700)
T ss_pred             cCCCcccc-------cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh--------ccCchHHHHHHHHHHHHHhc
Confidence            45666664       2257889999999999999999999999999999998        45799999999999999999


Q ss_pred             CChhhHhhchHHhh
Q 027539          184 GDFNQVRQSSVVFQ  197 (222)
Q Consensus       184 Gd~~eAi~~~~~~~  197 (222)
                      |++++|..+.++=+
T Consensus       419 G~l~eAa~~l~ea~  432 (700)
T KOG1156|consen  419 GLLDEAAAWLDEAQ  432 (700)
T ss_pred             CChHHHHHHHHHHH
Confidence            99999997666544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=82.14  E-value=1.3  Score=43.93  Aligned_cols=59  Identities=19%  Similarity=0.132  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +-|.|-+....+.+.+|..+|..++.....+. +--+-..-..+|||-+|.+++++++|+
T Consensus       417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             hhhhhheeehHhhhHHHHHHHHHHHHHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            44669999999999999999999995544443 333356677899999999999999999

>smart00028 TPR Tetratricopeptide repeats

Probab=81.63  E-value=2.4  Score=22.39  Aligned_cols=27  Identities=30%  Similarity=0.398  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHH
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALAR  157 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i  157 (222)
                      .+..|..+...|++++|...+.+++.+
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            455699999999999999999999875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=81.59  E-value=11  Score=32.90  Aligned_cols=68  Identities=13%  Similarity=0.066  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVF  196 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~  196 (222)
                      ...-.++.|+-++..|++++|..+|..+...|.+  ..-+.=...++..|...++++||.++.+..+-++
T Consensus       177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3344556777788888888888888888666553  3445666778888888888888888888555544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PRK11906 transcriptional regulator; Provisional

Probab=81.32  E-value=3.4  Score=39.98  Aligned_cols=62  Identities=23%  Similarity=0.191  Sum_probs=55.1

Q ss_pred             cccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          121 VGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       121 ~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.--..|+..++-.|.+....|+++.|..+|.+|+.        +.|..|..+...|.+....|+.++|+
T Consensus       331 veld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--------L~Pn~A~~~~~~~~~~~~~G~~~~a~  392 (458)
T PRK11906        331 SDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--------HSTDIASLYYYRALVHFHNEKIEEAR  392 (458)
T ss_pred             HhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--------cCCccHHHHHHHHHHHHHcCCHHHHH
Confidence            344567788888899998889999999999999995        57999999999999999999999999

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=80.55  E-value=2.4  Score=24.33  Aligned_cols=19  Identities=26%  Similarity=0.457  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHcCChhhHh
Q 027539          172 TYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       172 ~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ++..+|.+|+.+|++++|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~   20 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAI   20 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHH
Confidence            6788999999999999999

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=80.52  E-value=8.2  Score=32.11  Aligned_cols=56  Identities=20%  Similarity=0.205  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+.+|++--||+-++|++-+++|+.+    -|+-....+.+|-.-+.+|..+|+-+.|.
T Consensus        80 yNNRAQa~RLq~~~e~ALdDLn~AleL----ag~~trtacqa~vQRg~lyRl~g~dd~AR  135 (175)
T KOG4555|consen   80 YNNRAQALRLQGDDEEALDDLNKALEL----AGDQTRTACQAFVQRGLLYRLLGNDDAAR  135 (175)
T ss_pred             hccHHHHHHHcCChHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHHHHhCchHHHH
Confidence            344699999999999999999999875    68888999999999999999999999887

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.47  E-value=2  Score=40.08  Aligned_cols=96  Identities=14%  Similarity=0.183  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHceeeeccccCCCCCCCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 027539           80 SILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMI  159 (222)
Q Consensus        80 ~lLR~ic~K~GIQl~~rdY~f~~~~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~e  159 (222)
                      .-||+=|.|..--+           -++.+|+.|-..+|-.. |.-.+|....+.|-...+.|++|+|+.-|++|+.+  
T Consensus       108 ~~L~~~~lqLqaAI-----------kYse~Dl~g~rsLveQl-p~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv--  173 (459)
T KOG4340|consen  108 PALHSRVLQLQAAI-----------KYSEGDLPGSRSLVEQL-PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV--  173 (459)
T ss_pred             HHHHHHHHHHHHHH-----------hcccccCcchHHHHHhc-cCCCccchhccchheeeccccHHHHHHHHHHHHhh--
Confidence            45677776654333           36788888877776543 45578888899999999999999999999999863  


Q ss_pred             HHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHH
Q 027539          160 AVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVV  195 (222)
Q Consensus       160 qV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~  195 (222)
                         |-..|-+|-   ++|..+|..|+++.|+.+-.+
T Consensus       174 ---sGyqpllAY---niALaHy~~~qyasALk~iSE  203 (459)
T KOG4340|consen  174 ---SGYQPLLAY---NLALAHYSSRQYASALKHISE  203 (459)
T ss_pred             ---cCCCchhHH---HHHHHHHhhhhHHHHHHHHHH
Confidence               567787773   699999999999999954433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=80.35  E-value=1.3  Score=43.02  Aligned_cols=68  Identities=19%  Similarity=0.199  Sum_probs=55.3

Q ss_pred             ccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          118 CKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       118 VK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      =|-...++-|.+-....|+.+..-++.++|...|..|+..     |..   -...|..||.+|-+++|..+|.    .|+
T Consensus       422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-----~dt---e~~~l~~LakLye~l~d~~eAa----~~y  489 (559)
T KOG1155|consen  422 QKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-----GDT---EGSALVRLAKLYEELKDLNEAA----QYY  489 (559)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----ccc---chHHHHHHHHHHHHHHhHHHHH----HHH
Confidence            3555566667777778899999999999999999999864     332   3468999999999999999999    666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	9e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	9e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	8e-04

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 140 DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ 188
           D+ K ++A +    ALA      G  H   A+T + LAV+    G + +
Sbjct: 55  DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 10/49 (20%), Positives = 13/49 (26%), Gaps = 2/49 (4%)

Query: 140 DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ 188
            K K  D+  YG          C     T  +T   L  +    G    
Sbjct: 224 SKDKRRDSAPYGEYGS--WYKACKVDSPTVNTTLRSLGALYRRQGKLEA 270

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 140 DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ 188
            +GK ++A     +AL     V G +H   A   + LA++  + G   +
Sbjct: 97  KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEE 145

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.7 bits (99), Expect = 6e-05
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 140 DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ 188
           ++GK E+   Y  +AL       GP     A T + LA      G +  
Sbjct: 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQD 187

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.4 bits (98), Expect = 9e-05
 Identities = 10/51 (19%), Positives = 19/51 (37%)

Query: 138 ALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ 188
           +        AV    +AL  +    G  H   A+  ++LA+V      + +
Sbjct: 11  SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKE 61

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 7/50 (14%), Positives = 12/50 (24%), Gaps = 1/50 (2%)

Query: 140 DKGKLEDAVNYGTKALARM-IAVCGPYHRTTASTYSLLAVVLYHTGDFNQ 188
            +GK +DA     + L R      G  +      +               
Sbjct: 181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRD 230

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 140 DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ 188
           D+ K +DA N    ALA      G  H   A+T + LAV+    G + +
Sbjct: 81  DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 129

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 140 DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ 188
            +G+ E AV    +AL  +    G  H   A+  ++LA+V      +  
Sbjct: 39  SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKD 87

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 140 DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ 188
            +GK ++A     +AL     V G  H   A   + LA++  + G + +
Sbjct: 123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 140 DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ 188
           ++GK E+   Y  +AL       GP     A T + LA      G F Q
Sbjct: 165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQ 213

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 2/49 (4%)

Query: 140 DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQ 188
            KGK +D  ++G          C     T  +T   L  +    G F  
Sbjct: 250 CKGKQKDGTSFG--EYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEA 296

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 7/50 (14%), Positives = 11/50 (22%), Gaps = 1/50 (2%)

Query: 140 DKGKLEDAVNYGTKALARM-IAVCGPYHRTTASTYSLLAVVLYHTGDFNQ 188
            +GK + A     + L R      G         +          G    
Sbjct: 207 KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.39
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.33
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.31
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.19
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.16
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.91
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.44
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.44
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.42
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.31
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.26
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.21
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.19
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.18
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.14
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.07
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.04
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.03
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.0
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.95
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.95
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.94
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.94
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.92
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.91
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.9
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.89
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.87
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.86
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.86
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.86
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.86
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.83
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.83
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.82
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.82
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.82
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.8
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.78
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.78
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.78
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.77
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.76
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.76
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.75
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.75
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.74
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.74
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.73
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.73
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.73
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.71
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.7
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.69
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.68
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.67
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.65
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.63
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.63
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.6
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.59
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.58
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.58
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.58
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.58
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.57
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.56
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.55
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.54
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.54
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.51
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.49
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.49
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.48
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.46
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.46
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.44
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.42
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.42
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.42
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.41
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.41
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.4
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.4
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.4
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.39
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.39
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.38
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.38
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.36
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.35
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.33
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.32
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.31
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.27
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.27
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.27
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.27
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.26
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.26
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.25
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.24
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.22
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.21
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.19
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.18
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.18
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.17
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.16
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.14
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.1
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.08
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.08
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.03
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.03
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.0
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.0
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.99
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.99
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.98
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.98
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	96.98
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.97
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.96
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	96.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.92
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.9
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.9
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.87
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.86
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.86
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	96.84
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.84
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.8
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	96.8
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.8
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.77
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.71
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.68
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.62
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.62
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.59
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.58
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.58
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.58
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.57
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	96.56
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	96.56
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.52
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.52
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.48
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.47
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.4
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.31
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.28
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.11
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.01
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.91
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	95.86
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	95.68
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.43
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.31
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	94.88
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	94.87
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	94.68
1klx_A	138	Cysteine rich protein B; structural genomics, heli	93.86
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	93.83
2kat_A	115	Uncharacterized protein; NESG, structure, structur	93.59
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.92
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	92.72
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	92.58
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	91.34
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.24
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	90.92
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	90.78
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	90.67
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	90.39
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.23
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	89.78
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	89.71
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	89.38
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.16
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	88.94
1klx_A	138	Cysteine rich protein B; structural genomics, heli	88.42
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	87.44
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	86.88
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	86.83
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	85.89
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	85.5
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	84.4
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	84.17
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	83.87
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	83.16
2a9u_A	144	Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL	82.48
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	82.15
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	80.92
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	80.84
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	80.81
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	80.51
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	80.11

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.39  E-value=2.3e-13  Score=126.53  Aligned_cols=79  Identities=16%  Similarity=0.119  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS  206 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a  206 (222)
                      .+..+-+.|.++..+|++++|.+++.+||.++++++|+.||+||..|++||.+|..+|++++|+    .++      ++|
T Consensus       339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~----~~~------~~A  408 (433)
T 3qww_A          339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGE----KAL------KKA  408 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHH----HHH------HHH
Confidence            4555566699999999999999999999999999999999999999999999999999999999    888      799


Q ss_pred             EEEeeeech
Q 027539          207 IIITSFCTE  215 (222)
Q Consensus       207 ~~i~e~~~~  215 (222)
                      +.|.|++.|
T Consensus       409 l~i~~~~lG  417 (433)
T 3qww_A          409 IAIMEVAHG  417 (433)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHcC
Confidence            999998876

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.33  E-value=8.8e-13  Score=124.40  Aligned_cols=79  Identities=11%  Similarity=0.054  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS  206 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a  206 (222)
                      .+..+-+.|.++..+|++++|.+++.+||.++++++|+.||+||..|++||.+|..+|++++|+    .++      ++|
T Consensus       350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~----~~~------~~A  419 (490)
T 3n71_A          350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGH----GMI------CKA  419 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHH----HHH------HHH
Confidence            4555566699999999999999999999999999999999999999999999999999999999    888      799


Q ss_pred             EEEeeeech
Q 027539          207 IIITSFCTE  215 (222)
Q Consensus       207 ~~i~e~~~~  215 (222)
                      +.|.|++.|
T Consensus       420 l~i~~~~lG  428 (490)
T 3n71_A          420 YAILLVTHG  428 (490)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhC
Confidence            999998876

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.31  E-value=1.4e-12  Score=120.75  Aligned_cols=79  Identities=18%  Similarity=0.168  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS  206 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a  206 (222)
                      .+..+-+.|.++..+|++++|++++.++|.++++++|+.||+||..|++||.+|..+|++++|+    .++      ++|
T Consensus       328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~----~~~------~~A  397 (429)
T 3qwp_A          328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAM----KNL------RLA  397 (429)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHH----HHH------HHH
Confidence            4556666799999999999999999999999999999999999999999999999999999999    888      799


Q ss_pred             EEEeeeech
Q 027539          207 IIITSFCTE  215 (222)
Q Consensus       207 ~~i~e~~~~  215 (222)
                      +.|.+++.|
T Consensus       398 l~i~~~~lG  406 (429)
T 3qwp_A          398 FDIMRVTHG  406 (429)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            999998876

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.19  E-value=9e-12  Score=117.49  Aligned_cols=79  Identities=13%  Similarity=0.060  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS  206 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a  206 (222)
                      .+.++++.+..+..||++++|+++|.++|.+.++++|+.||+|+.++++||.+|..+|+|++|+    .++      ++|
T Consensus       308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~----~~~------~~a  377 (490)
T 3n71_A          308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEAS----HYA------RRM  377 (490)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHH----HHH------HHH
Confidence            4566777777888999999999999999999999999999999999999999999999999999    777      678


Q ss_pred             EEEeeeech
Q 027539          207 IIITSFCTE  215 (222)
Q Consensus       207 ~~i~e~~~~  215 (222)
                      +.|.+++.|
T Consensus       378 L~i~~~~lG  386 (490)
T 3n71_A          378 VDGYMKLYH  386 (490)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHHcC
Confidence            888777655

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.16  E-value=1.3e-11  Score=114.75  Aligned_cols=79  Identities=11%  Similarity=-0.025  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS  206 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a  206 (222)
                      .+...++.++..-++|++++|+++|.++|.+.++++|+.||+||.+|++||.+|..+|+|++|+    .++      ++|
T Consensus       297 ~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~----~~~------~~a  366 (433)
T 3qww_A          297 YARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGAL----KYG------QKI  366 (433)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHH
T ss_pred             HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHH----HHH------HHH
Confidence            4556677777777889999999999999999999999999999999999999999999999999    777      788


Q ss_pred             EEEeeeech
Q 027539          207 IIITSFCTE  215 (222)
Q Consensus       207 ~~i~e~~~~  215 (222)
                      +.|.|++.|
T Consensus       367 L~i~~~~lG  375 (433)
T 3qww_A          367 IKPYSKHYP  375 (433)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHHcC
Confidence            888887765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.91  E-value=2.5e-10  Score=105.65  Aligned_cols=78  Identities=5%  Similarity=-0.081  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI  207 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~  207 (222)
                      ++++++....+..+|++++|.+++.++|.++++++|+.||+++.++++||.+|..+|++++|+    .++      ++|+
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~----~~~------~~~L  356 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEAL----FYG------TRTM  356 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHH----HHH------HHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHH----HHH------HHHH
Confidence            456666666677899999999999999999999999999999999999999999999999999    777      7888


Q ss_pred             EEeeeech
Q 027539          208 IITSFCTE  215 (222)
Q Consensus       208 ~i~e~~~~  215 (222)
                      .|++++.|
T Consensus       357 ~i~~~~lg  364 (429)
T 3qwp_A          357 EPYRIFFP  364 (429)
T ss_dssp             HHHHHHSC
T ss_pred             HhHHHHcC
Confidence            88877655

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.44  E-value=2.5e-07  Score=74.78  Aligned_cols=65  Identities=25%  Similarity=0.266  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+......|.++..+|++++|.++|.+++.++++..|+.||..+.++.+||.+|..+|++++|+
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  147 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE  147 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            34555667799999999999999999999999999999999999999999999999999999999

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.44  E-value=2.5e-07  Score=74.76  Aligned_cols=65  Identities=23%  Similarity=0.210  Sum_probs=61.4

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+......|.++..+|++++|.+++.+++.+.++.+|+.+|..+.++.+||.+|..+|++++|+
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  105 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE  105 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence            45566777899999999999999999999999999999999999999999999999999999999

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.42  E-value=1.8e-07  Score=70.74  Aligned_cols=56  Identities=16%  Similarity=0.141  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|...-+.|..+..+|++++|++.|++|+.+        +|+-+.+|+++|.+|..+|++++|+
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~   62 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECV   62 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHH
Confidence            3444556799999999999999999999986        6788899999999999999999998

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.31  E-value=3.1e-07  Score=81.31  Aligned_cols=57  Identities=23%  Similarity=0.194  Sum_probs=54.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          134 SSKIALDKGKLEDAVNYGTKALARMIAVCGP-YHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~-~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|.++..+|++++|++.|.+|+.+..+..+. .||.++.+|++||.+|+.+|++++|+
T Consensus        57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~  114 (472)
T 4g1t_A           57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ  114 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHH
Confidence            4999999999999999999999999998864 69999999999999999999999999

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.26  E-value=6.1e-06  Score=67.79  Aligned_cols=77  Identities=22%  Similarity=0.195  Sum_probs=67.3

Q ss_pred             ccccccccccCc-hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          114 MVPVCKHVGCTS-ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       114 i~PvVK~~~p~s-~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..++.+...+.. ..++.+...|..+..+|++++|.+++.+++.+.++..|+.+|..+.++..+|.+|..+|++++|+
T Consensus        12 ~~~~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~   89 (311)
T 3nf1_A           12 ENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA   89 (311)
T ss_dssp             GGGSCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            334444444444 45667788899999999999999999999999999999999999999999999999999999999

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.21  E-value=5e-06  Score=62.66  Aligned_cols=68  Identities=12%  Similarity=0.102  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEE
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSII  208 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~  208 (222)
                      -....|.++..+|++++|++.+.+|+.+..+ .+..|+..+.+|.++|.+|..+|++++|+    .++      ++|+.
T Consensus        44 ~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~lg~~~~~~~~~~~A~----~~~------~kal~  111 (127)
T 4gcn_A           44 FYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRADYKLIAKAMSRAGNAFQKQNDLSLAV----QWF------HRSLS  111 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHHHH
T ss_pred             HHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHHHHHHHHcCCHHHHH----HHH------HHHHh
Confidence            3556699999999999999999999998765 45678999999999999999999999999    666      56654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.19  E-value=1.8e-06  Score=65.29  Aligned_cols=57  Identities=19%  Similarity=0.149  Sum_probs=50.6

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..|+...+.|..+..+|++++|++.|++|+.+        .|+-+.+|.++|.+|..+|++++|+
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~   67 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRAL   67 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHH
Confidence            35667778899999999999999999999975        5666788999999999999999999

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.18  E-value=2.3e-06  Score=60.56  Aligned_cols=56  Identities=18%  Similarity=0.226  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+...+..|..+..+|++++|++.|.+|+.+        +|+-+..+.++|.+|..+|++++|+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~   58 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAI   58 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHH
Confidence            4667788899999999999999999999986        4555678999999999999999999

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.16  E-value=2.5e-06  Score=70.11  Aligned_cols=64  Identities=23%  Similarity=0.255  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+.-....|.++...|++++|.+++.+++.+.++..|+.+|..+.++.++|.+|..+|++++|+
T Consensus       110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  173 (311)
T 3nf1_A          110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE  173 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4555667799999999999999999999999999999999999999999999999999999999

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.14  E-value=3e-06  Score=62.27  Aligned_cols=57  Identities=21%  Similarity=0.126  Sum_probs=48.6

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+..+.+.|..+..+|++++|++.|.+++.+        .|+-+.++.++|.+|..+|++++|+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~   58 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAI   58 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHH
Confidence            45777888899999999999999999999876        4556688899999999999999888

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.13  E-value=3.5e-06  Score=64.91  Aligned_cols=66  Identities=14%  Similarity=0.183  Sum_probs=58.4

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPY----------HRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~----------HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ...+..+.+.|..+..+|++++|+..|.+|+.+........          .|..+.+|.++|.+|..+|++++|+
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            35678899999999999999999999999999988765422          5677899999999999999999999

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.07  E-value=3.8e-06  Score=60.59  Aligned_cols=64  Identities=11%  Similarity=0.011  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEE
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSII  208 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~  208 (222)
                      .-.+..|.++..+|++++|++.|.+++.+        .|+....|.+||.+|..+|++++|+    .++      ++|+.
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~----~~~------~~al~   69 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAI----DTY------AQGIE   69 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHH----HHH------HHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHH----HHH------HHHHh
Confidence            34566799999999999999999999986        4555668999999999999999999    666      56655


Q ss_pred             Ee
Q 027539          209 IT  210 (222)
Q Consensus       209 i~  210 (222)
                      +.
T Consensus        70 l~   71 (100)
T 3ma5_A           70 VA   71 (100)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.04  E-value=6.7e-06  Score=69.59  Aligned_cols=63  Identities=13%  Similarity=0.091  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+.-+...|.++..+|++++|+++|.+|+.++++.- ..++..+.+|.++|.+|..+|++++|+
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~nlg~~y~~~~~y~~A~  216 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNHAKALYLDSRYEESL  216 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHhHHHHHH
Confidence            344566679999999999999999999999988763 489999999999999999999999999

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.03  E-value=5.6e-06  Score=64.25  Aligned_cols=62  Identities=10%  Similarity=0.086  Sum_probs=53.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEe
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIIT  210 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~  210 (222)
                      ....|.++..+|++++|++.|.+++.+        +|+.+.++.+||.+|..+|++++|+    .++      ++|+.+.
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~~A~----~~~------~~al~~~  171 (184)
T 3vtx_A          110 YYKLGLVYDSMGEHDKAIEAYEKTISI--------KPGFIRAYQSIGLAYEGKGLRDEAV----KYF------KKALEKE  171 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH----HHH------HHHHHTT
T ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHh--------cchhhhHHHHHHHHHHHCCCHHHHH----HHH------HHHHhCC
Confidence            455699999999999999999999986        6777889999999999999999999    666      5676553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.00  E-value=9.8e-06  Score=60.66  Aligned_cols=52  Identities=10%  Similarity=0.003  Sum_probs=38.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .++.|..++.+|++++|+..|.+++.+        .|+-+..+..||.++..+|++++|+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~   71 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAI   71 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            466677788888888888888877764        4555667777777777777777777

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.95  E-value=1.2e-05  Score=59.03  Aligned_cols=73  Identities=15%  Similarity=0.111  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS  206 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a  206 (222)
                      .+.-....|.++..+|++++|.+++.+++.+.++.-  .++..+.++.+||.+|..+|++++|+    .+.      ++|
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~----~~~------~~a  155 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAM----HFA------EKH  155 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHH----HHH------HHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHHHccCHHHHH----HHH------HHH
Confidence            355566779999999999999999999999988753  47889999999999999999999999    666      556


Q ss_pred             EEEee
Q 027539          207 IIITS  211 (222)
Q Consensus       207 ~~i~e  211 (222)
                      +.+.+
T Consensus       156 ~~~~~  160 (164)
T 3ro3_A          156 LEISR  160 (164)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            55443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.95  E-value=1.3e-05  Score=61.69  Aligned_cols=59  Identities=15%  Similarity=0.185  Sum_probs=48.7

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ....+..++..|..+..+|++++|++.|.+++.+        .|+.+.+|.++|.+|+.+|++++|+
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~   65 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAA   65 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHH
Confidence            4567778888899999999999999999988876        3555778888888888888888888

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.94  E-value=1.1e-05  Score=63.66  Aligned_cols=57  Identities=14%  Similarity=0.025  Sum_probs=47.8

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .++...+..|..+..+|++++|.+.|.+++.+        .|+-+..+.+||.+|..+|++++|+
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai   90 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAA   90 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHH
Confidence            44556777899999999999999999999876        4555667889999999999999998

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.94  E-value=1.1e-05  Score=60.84  Aligned_cols=63  Identities=6%  Similarity=0.033  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEE
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSII  208 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~  208 (222)
                      .-.+..|.++...|++++|++.|.+|+.+        .|+-+.+|.++|.+|..+|++++|+    .++      ++|+.
T Consensus        48 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~----~~~------~~al~  109 (126)
T 4gco_A           48 ILYSNRAACLTKLMEFQRALDDCDTCIRL--------DSKFIKGYIRKAACLVAMREWSKAQ----RAY------EDALQ  109 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH----HHH------HHHHH
T ss_pred             HHHHHHhhHHHhhccHHHHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHCCCHHHHH----HHH------HHHHH
Confidence            34556699999999999999999999986        5666778999999999999999999    666      56665


Q ss_pred             E
Q 027539          209 I  209 (222)
Q Consensus       209 i  209 (222)
                      +
T Consensus       110 l  110 (126)
T 4gco_A          110 V  110 (126)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.92  E-value=2.4e-05  Score=53.28  Aligned_cols=56  Identities=20%  Similarity=0.371  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+...+..|..+..+|++++|.+.|.+++.+        +|+....+.++|.+|..+|++++|+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~   63 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAI   63 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHH
Confidence            4566777899999999999999999999975        4555678999999999999999999

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.91  E-value=3.7e-05  Score=56.30  Aligned_cols=61  Identities=15%  Similarity=0.073  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-....|.++..+|++++|.+++.+++.+..+.  ..++..+.++.++|.+|..+|++++|+
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~  109 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAI  109 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4566777999999999999999999999999876  456778999999999999999999999

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.90  E-value=1.1e-05  Score=70.27  Aligned_cols=63  Identities=14%  Similarity=-0.017  Sum_probs=57.1

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+.-....|.++..+|++++|.+.|.+|+.+..+.  ..++..+.++.+||.+|..+|++++|+
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~  244 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAI  244 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            345566777999999999999999999999999987  678999999999999999999999999

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.89  E-value=2.2e-05  Score=57.57  Aligned_cols=59  Identities=19%  Similarity=0.143  Sum_probs=45.2

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ....+...+..|..+..+|++++|.+.|.+++.+        .|+.+.++.++|.+|..+|++++|+
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~   63 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQAL   63 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHH
Confidence            3445667777888888888888888888888875        3555667888888888888888887

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.88  E-value=3e-05  Score=57.00  Aligned_cols=64  Identities=14%  Similarity=0.065  Sum_probs=55.2

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ......+...+..|..+..+|++++|.++|.+++.+     .|.+++.+.++.++|.+|..+|++++|+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~   85 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAE   85 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHH
Confidence            334556788888999999999999999999999874     4666777999999999999999999998

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.87  E-value=1.7e-05  Score=69.04  Aligned_cols=64  Identities=11%  Similarity=0.081  Sum_probs=58.9

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+.-....|.++...|++++|++.+.+|+.++.+. |..++..+.++++||.+|..+|++++|+
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~  204 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAI  204 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            456777888999999999999999999999999986 5568999999999999999999999999

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.86  E-value=1.3e-05  Score=61.88  Aligned_cols=53  Identities=8%  Similarity=0.048  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+..|+++..+|++++|.+.|++++.+        +|+-+.++.+||.+|..+|++++|+
T Consensus        33 ~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~   85 (150)
T 4ga2_A           33 KGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPKAHRFLGLLYELEENTDKAV   85 (150)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCchHHHH
Confidence            3466799999999999999999999986        5777789999999999999999999

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.86  E-value=2.5e-05  Score=57.18  Aligned_cols=56  Identities=16%  Similarity=0.156  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+.-.+..|.++..+|++++|++.|.+++.+        +|+-...+.+||.+|..+|++++|+
T Consensus        26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A           26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHcCCHHHHH
Confidence            3445666799999999999999999999987        5556788999999999999999999

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.86  E-value=3e-05  Score=60.23  Aligned_cols=64  Identities=17%  Similarity=0.134  Sum_probs=56.7

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+.-....|.++..+|++++|.+++.+|+.+.++ .|..++..+.++.+||.+|..+|++++|+
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  127 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGAR  127 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            44566777899999999999999999999999984 55556689999999999999999999998

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.86  E-value=2.3e-05  Score=66.23  Aligned_cols=62  Identities=13%  Similarity=0.094  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTA-STYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA-~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+.-....|.++..+|++++|.++|.+|+.+.+...+.  +... .+|+++|.+|..+|++++|+
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--~~~~~~~~~nlg~~y~~~~~y~~Al  216 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEFDVKVRYNHAKALYLDSRYEESL  216 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--ccchHHHHHhHHHHHHHHhhHHHHH
Confidence            45566777999999999999999999999999876543  4433 89999999999999999999

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.83  E-value=3.5e-05  Score=62.78  Aligned_cols=73  Identities=14%  Similarity=0.057  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHH----HHHHHHHHHcCChhhHhhchHHhhhhhCC
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTY----SLLAVVLYHTGDFNQVRQSSVVFQCQLGD  202 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y----~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~  202 (222)
                      ++.-..+.|.++...|++++|++.|.+||.+|.+ -|.++|+-+..|    +++|.++..+|++++|+    ..+     
T Consensus        56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~-~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl----~~y-----  125 (159)
T 2hr2_A           56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNR-RGELNQDEGKLWISAVYSRALALDGLGRGAEAM----PEF-----  125 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH----HHH-----
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc-cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHH----HHH-----
Confidence            4446677899999999999999999999998554 579999999999    99999999999999999    777     


Q ss_pred             CCceEEEe
Q 027539          203 SKSSIIIT  210 (222)
Q Consensus       203 ~~~a~~i~  210 (222)
                       ++|+.+.
T Consensus       126 -~kAlel~  132 (159)
T 2hr2_A          126 -KKVVEMI  132 (159)
T ss_dssp             -HHHHHHH
T ss_pred             -HHHHhcC
Confidence             6777653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.83  E-value=2.9e-05  Score=66.03  Aligned_cols=61  Identities=16%  Similarity=0.023  Sum_probs=52.4

Q ss_pred             HHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLE-SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle-~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      |-+.++ +|.++..+|++++|.+.|.+|+.++.+. | .+++.+.+|+++|.+|..+|++++|+
T Consensus        36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA-G-NEDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            334444 4678999999999999999999999875 3 46788999999999999999999998

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.82  E-value=2.9e-05  Score=57.05  Aligned_cols=66  Identities=15%  Similarity=0.189  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .+.+.++.|+.+..+|+++.|..-|.+|+.....-.. .-+.-+.+|.+||.+|+++|++++|+    .+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~----~~~   69 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKAL----LLT   69 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHH----HHH
Confidence            5678899999999999999999999999988753321 12356688999999999999999999    555

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.82  E-value=2e-05  Score=66.66  Aligned_cols=71  Identities=10%  Similarity=-0.056  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhH-hhchHHhhhhhCCCCceE
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQV-RQSSVVFQCQLGDSKSSI  207 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eA-i~~~~~~~~~~~~~~~a~  207 (222)
                      .-.++.|.++..+|++++|++++.+|+.+..+  ...+...+.+|.++|.+|..+|++++| .    .++      ++|+
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~----~~~------~~Al  264 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCR--INSMALIGQLYYQRGECLRKLEYEEAEIE----DAY------KKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTBCSSHHHHHHHHHHHHHHTTCCHHHHH----HHH------HHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHcCCcHHHHH----HHH------HHHH
Confidence            56777899999999999999999999999854  556778899999999999999999999 6    545      4666


Q ss_pred             EEee
Q 027539          208 IITS  211 (222)
Q Consensus       208 ~i~e  211 (222)
                      .+.+
T Consensus       265 ~~~~  268 (293)
T 2qfc_A          265 FFFD  268 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.82  E-value=2.2e-05  Score=55.04  Aligned_cols=52  Identities=19%  Similarity=0.310  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTAS-TYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~-~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .++.|..+..+|++++|++.|.+++.+        +|+-.. .+.++|.+|+.+|++++|+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~   55 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKAL   55 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence            367899999999999999999999985        455566 8999999999999999999

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.80  E-value=5.6e-05  Score=65.06  Aligned_cols=63  Identities=16%  Similarity=0.110  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-....|.++..+|++++|.+++.+++.+..+.-|+.||..+.++.+||.+|+.+|++++|.
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  155 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE  155 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence            445667799999999999999999999999999999889999999999999999999999998

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.78  E-value=4e-05  Score=59.51  Aligned_cols=63  Identities=8%  Similarity=0.036  Sum_probs=57.0

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+.-....|.++..+|++++|.+++.+|+.+.++.  ...|..+.++.++|.+|..+|++++|+
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~   86 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAAR   86 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            356667778999999999999999999999999875  467899999999999999999999999

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.78  E-value=3.1e-05  Score=56.69  Aligned_cols=54  Identities=11%  Similarity=0.094  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-.+..|.++...|++++|++.|.+++.+        .|+-..++.++|.+|..+|++++|+
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~   92 (126)
T 3upv_A           39 RGYSNRAAALAKLMSFPEAIADCNKAIEK--------DPNFVRAYIRKATAQIAVKEYASAL   92 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhCHHHHH
Confidence            44566799999999999999999999987        4666788999999999999999999

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.78  E-value=3.9e-05  Score=65.19  Aligned_cols=62  Identities=21%  Similarity=0.155  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc-CChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHT-GDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~-Gd~~eAi  190 (222)
                      .+..+.+.|.++..+|++++|++.|.+|+.++.+.  ...+..+.+|++||.+|..+ |++++|+
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~~lg~~~~A~  138 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAI  138 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence            35667788999999999999999999999999764  23456789999999999996 9999998

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.78  E-value=4.6e-05  Score=55.14  Aligned_cols=55  Identities=18%  Similarity=0.106  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-.+..|.++..+|++++|...|.+++.+        .|+.+..+.+||.+|..+|++++|+
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~   73 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQGDRAGAR   73 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            345666799999999999999999999986        4666778999999999999999999

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.77  E-value=1.3e-05  Score=78.65  Aligned_cols=59  Identities=31%  Similarity=0.311  Sum_probs=45.6

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|..++|..  +.|.++.++|++++|+++|++|+.+        +|+-+.+|++||.+|..+|++++|+
T Consensus         5 ~P~~a~al~--nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~   63 (723)
T 4gyw_A            5 CPTHADSLN--NLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEAL   63 (723)
T ss_dssp             -CHHHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            344445544  4488888889999888888888876        5677778888888888888888888

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.76  E-value=2.1e-05  Score=64.07  Aligned_cols=74  Identities=14%  Similarity=0.040  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhC
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG----PYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLG  201 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G----~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~  201 (222)
                      ..|+.+++.|..+...|++++|++.|.+||.+--....    ...|.-+.+|+++|.++..+|++++|+    ..+    
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl----~~~----   80 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL----HSA----   80 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHH----HHH----
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHH----HHH----
Confidence            47889999999999999999999999999998754100    112335669999999999999999999    665    


Q ss_pred             CCCceEEE
Q 027539          202 DSKSSIII  209 (222)
Q Consensus       202 ~~~~a~~i  209 (222)
                        .+||.+
T Consensus        81 --~kAL~l   86 (159)
T 2hr2_A           81 --DKALHY   86 (159)
T ss_dssp             --HHHHHH
T ss_pred             --HHHHHh
Confidence              566654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.76  E-value=8.9e-05  Score=52.78  Aligned_cols=61  Identities=11%  Similarity=0.176  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-.+..|.++..+|++++|.+++.+++.+... .++.++..+.++.++|.+|..+|++++|+
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~   99 (131)
T 1elr_A           39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAYARIGNSYFKEEKYKDAI   99 (131)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            34566799999999999999999999998764 35677777999999999999999999999

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.75  E-value=3.4e-05  Score=65.22  Aligned_cols=74  Identities=11%  Similarity=0.002  Sum_probs=62.7

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCC-hhhHhhchHHhhhhhCCCC
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGD-FNQVRQSSVVFQCQLGDSK  204 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd-~~eAi~~~~~~~~~~~~~~  204 (222)
                      ..+.-+.+.|.++..+|++++|++++.+|+.+..+.  ..++..+.+|.++|.+|..+|+ +++|+    .++      +
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~----~~~------~  261 (293)
T 3u3w_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIE----DAY------K  261 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHH----HHH------H
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHH----HHH------H
Confidence            445567788999999999999999999999998775  4567889999999999999994 69999    766      6


Q ss_pred             ceEEEee
Q 027539          205 SSIIITS  211 (222)
Q Consensus       205 ~a~~i~e  211 (222)
                      +|+.|.+
T Consensus       262 ~Al~i~~  268 (293)
T 3u3w_A          262 KASFFFD  268 (293)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.75  E-value=2.2e-05  Score=61.96  Aligned_cols=61  Identities=10%  Similarity=-0.073  Sum_probs=50.1

Q ss_pred             cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      |..+.+  .+..|.++..+|++++|++.|.+|+.+.     |.+   +..+.+||.+|..+|++++|+    .++
T Consensus        67 P~~~~~--~~~lg~~~~~~g~~~~Ai~~~~~al~l~-----P~~---~~~~~~lg~~~~~lg~~~eA~----~~~  127 (151)
T 3gyz_A           67 FYNVDY--IMGLAAIYQIKEQFQQAADLYAVAFALG-----KND---YTPVFHTGQCQLRLKAPLKAK----ECF  127 (151)
T ss_dssp             TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SSC---CHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred             CCCHHH--HHHHHHHHHHHccHHHHHHHHHHHHhhC-----CCC---cHHHHHHHHHHHHcCCHHHHH----HHH
Confidence            344444  4455999999999999999999999873     444   457999999999999999999    666

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.74  E-value=4.5e-05  Score=55.30  Aligned_cols=54  Identities=24%  Similarity=0.196  Sum_probs=25.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +..|..+..+|++++|.++|.+++..     .|.++..+..+..+|.+|+.+|++++|+
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~   59 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAE   59 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHH
Confidence            34444455555555555554444432     2344444444444555555555544444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.74  E-value=3.8e-05  Score=55.21  Aligned_cols=60  Identities=18%  Similarity=0.153  Sum_probs=43.0

Q ss_pred             cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +........+..|..+..+|++++|.++|.+++.+        .|+-+.++..+|.+|..+|++++|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~   70 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLAL   70 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHH
Confidence            34455666777788888888888888888877753        3444666777777777777777777

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.73  E-value=6.5e-05  Score=56.77  Aligned_cols=57  Identities=16%  Similarity=0.031  Sum_probs=45.8

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+....+..|..+..+|++++|.++|.+++.+        +|+-+..+..||.+|..+|++++|+
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~   72 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQAL   72 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHH
Confidence            45566777888999999999999998888864        4555667888888888888888887

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.73  E-value=7.4e-05  Score=54.13  Aligned_cols=57  Identities=16%  Similarity=0.112  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-.+..|.++..+|++++|.+.|.+++..     .|.++.+..++..+|.+|..+|++++|+
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~la~~~~~~g~~~~A~   96 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDKAAGGLLKLGLSQYGEGKNTEAQ   96 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            44566799999999999999999999885     4778888999999999999999999999

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.73  E-value=3.9e-05  Score=58.99  Aligned_cols=54  Identities=15%  Similarity=0.173  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-.+..|.++...|++++|++.|.+++.+        +|+-..+|.++|.+|..+|++++|+
T Consensus        46 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~   99 (164)
T 3sz7_A           46 IYLSNRAAAYSASGQHEKAAEDAELATVV--------DPKYSKAWSRLGLARFDMADYKGAK   99 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHH
Confidence            44566799999999999999999999987        4666789999999999999999999

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.71  E-value=3.8e-05  Score=59.37  Aligned_cols=57  Identities=12%  Similarity=0.020  Sum_probs=39.6

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .++...++.|..+..+|++++|.++|.+++.+        .|+-+..+.+||.+|..+|++++|+
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~   75 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAI   75 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHH
Confidence            34555666777777788888777777777764        3444556677777777777777776

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.70  E-value=5.1e-05  Score=66.14  Aligned_cols=62  Identities=16%  Similarity=-0.042  Sum_probs=42.4

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+....+.|.++..+|++++|.+++.+|+.+.++.   .+|..+.++.+||.+|..+|++++|+
T Consensus       220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~  281 (378)
T 3q15_A          220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAF  281 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHH
Confidence            344455556777777777777777777777776664   44555777777777777777777777

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.69  E-value=7.4e-05  Score=65.14  Aligned_cols=63  Identities=16%  Similarity=0.023  Sum_probs=56.3

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+......|.++...|++++|.+.|.+|+.+..+.  ...+..+.++++||.+|..+|++++|+
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~  242 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAV  242 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            356666777999999999999999999999999876  445689999999999999999999999

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.68  E-value=6.1e-05  Score=58.26  Aligned_cols=53  Identities=17%  Similarity=0.147  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -.++.|.++..+|++++|++.|++|+.+        +|+-+.++..||.+|..+|++++|+
T Consensus         7 iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~   59 (184)
T 3vtx_A            7 IYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAI   59 (184)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3456799999999999999999999976        5666788999999999999999999

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.67  E-value=8.3e-05  Score=52.92  Aligned_cols=56  Identities=23%  Similarity=0.235  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+...+..|..+...|++++|.++|.+++.+        .|+.+.++.++|.+|..+|++++|+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~   58 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCR   58 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHH
Confidence            4566778899999999999999999999986        3555678999999999999999999

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.65  E-value=5.1e-05  Score=58.21  Aligned_cols=55  Identities=16%  Similarity=0.119  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-.+..|.++...|++++|+..+.+|+.+        .|+-+.+|..+|.+|+.+|++++|+
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~  117 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR--------EETNEKALFRRAKARIAAWKLDEAE  117 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHH
Confidence            344566799999999999999999999988        5777789999999999999999999

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.64  E-value=6e-05  Score=62.03  Aligned_cols=62  Identities=16%  Similarity=0.202  Sum_probs=56.1

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ...++..++..|..++.+|++++|.++|.+++..+     |.+|..+.++..||.+|+.+|++++|+
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~   72 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAA   72 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHH
Confidence            34567789999999999999999999999998754     788888999999999999999999999

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.63  E-value=0.0001  Score=60.22  Aligned_cols=73  Identities=15%  Similarity=0.094  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI  207 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~  207 (222)
                      +......|.++..+|++++|.+++.+++.+..+.-.  ++..+.++..||.+|..+|++++|+    .+.      ++|+
T Consensus       263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~----~~~------~~a~  330 (338)
T 3ro2_A          263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLGNAYTALGNHDQAM----HFA------EKHL  330 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHH----HHH------HHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHcCChHHHH----HHH------HHHH
Confidence            555666788888888888888888888888877633  6778888888888888888888888    666      5666


Q ss_pred             EEeee
Q 027539          208 IITSF  212 (222)
Q Consensus       208 ~i~e~  212 (222)
                      .+.++
T Consensus       331 ~~~~~  335 (338)
T 3ro2_A          331 EISRE  335 (338)
T ss_dssp             HC---
T ss_pred             HHHHh
Confidence            66544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.63  E-value=9.1e-05  Score=59.77  Aligned_cols=56  Identities=18%  Similarity=0.300  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH----------------HHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSL----------------LAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~----------------LA~vy~~~Gd~~eAi  190 (222)
                      .++.++..|..++.+|++++|+++|.+++.+        +|+-+..+..                ||.+|..+|++++|+
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~   74 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY   74 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHH
Confidence            4678899999999999999999999999986        6777778888                999999999999999

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.60  E-value=0.00012  Score=51.03  Aligned_cols=55  Identities=22%  Similarity=0.294  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +...+..|..+..+|++++|.++|.+++.+        .|+-...+..+|.+|..+|++++|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~   58 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAY   58 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHH
Confidence            456667788888888888888888877764        2333456777777777777777777

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.60  E-value=0.00012  Score=51.82  Aligned_cols=57  Identities=18%  Similarity=0.223  Sum_probs=44.4

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+...+..|..+...|++++|.+++.+++.+        +|+-+..+..+|.+|..+|++++|+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~   66 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAV   66 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHH
Confidence            45666777788888888888888888888875        4445667888888888888888887

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.59  E-value=0.00014  Score=53.26  Aligned_cols=54  Identities=11%  Similarity=0.059  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-.+..|.++..+|++++|...+.+++.+        +|+.+.++.++|.+|..+|++++|+
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~   97 (137)
T 3q49_B           44 VYYTNRALCYLKMQQPEQALADCRRALEL--------DGQSVKAHFFLGQCQLEMESYDEAI   97 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHHhhHHHHH
Confidence            34566699999999999999999999986        4666779999999999999999999

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.58  E-value=9.7e-05  Score=63.81  Aligned_cols=73  Identities=10%  Similarity=0.073  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI  207 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~  207 (222)
                      +......|.++..+|++++|.+++.+++.+..+.  ..++..+.++..||.+|..+|++++|+    .+.      ++|+
T Consensus       303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~----~~~------~~al  370 (411)
T 4a1s_A          303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARACWSLGNAHSAIGGHERAL----KYA------EQHL  370 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHHHHhccHHHHH----HHH------HHHH
Confidence            4455566777777777777777777777777665  346667777777777777777777777    555      4555


Q ss_pred             EEeee
Q 027539          208 IITSF  212 (222)
Q Consensus       208 ~i~e~  212 (222)
                      .+.++
T Consensus       371 ~~~~~  375 (411)
T 4a1s_A          371 QLAXX  375 (411)
T ss_dssp             HHCCH
T ss_pred             HHHhh
Confidence            55443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.58  E-value=9.4e-05  Score=63.27  Aligned_cols=61  Identities=18%  Similarity=0.107  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+..+.+.|.++.. |++++|+++|.+|+.++.+. | .++..+.+++++|.+|..+|++++|+
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~-~~~~~~~~~~~lg~~~~~~g~~~~A~  175 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-E-RLRQAAELIGKASRLLVRQQKFDEAA  175 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-C-ChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            45666778999988 99999999999999999873 2 34567899999999999999999999

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.58  E-value=0.00011  Score=56.78  Aligned_cols=52  Identities=12%  Similarity=0.034  Sum_probs=45.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+..|.++...|++++|++.|.+|+.+     .|.+   ...+.++|.+|..+|++++|+
T Consensus        58 ~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~---~~~~~~lg~~~~~~g~~~~A~  109 (148)
T 2vgx_A           58 FLGLGACRQAMGQYDLAIHSYSYGAVM-----DIXE---PRFPFHAAECLLQXGELAEAE  109 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---THHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCC---chHHHHHHHHHHHcCCHHHHH
Confidence            456699999999999999999999986     3444   567899999999999999999

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.58  E-value=3.8e-05  Score=67.78  Aligned_cols=61  Identities=15%  Similarity=0.104  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC--ChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG--DFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G--d~~eAi  190 (222)
                      ...+.|.++..+|++++|.+++.+++.+..+..++.|++.+..|.++|..+...|  ++++|+
T Consensus        96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~  158 (472)
T 4g1t_A           96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAK  158 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHH
Confidence            3445599999999999999999999999999999999999999999998777654  688998

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.57  E-value=7e-05  Score=63.76  Aligned_cols=56  Identities=18%  Similarity=0.135  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+..+.+.|..+..+|++++|+++|.+|+.+        +|+.+..|.++|.+|..+|++++|+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~   58 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQAL   58 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHH
Confidence            4566778899999999999999999999986        5666778888999999999988888

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.56  E-value=0.00015  Score=54.27  Aligned_cols=57  Identities=12%  Similarity=0.157  Sum_probs=48.6

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+..++..|..+..+|++++|..+|.+++.+        +|+.+.++.++|.+|..+|++++|+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~   67 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYAL   67 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHH
Confidence            45677888899999999999999999999885        4555778889999999999999988

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.55  E-value=0.00016  Score=50.39  Aligned_cols=54  Identities=20%  Similarity=0.193  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-.+..|.++..+|++++|.+.+.+++.+        +|+...++.++|.+|..+|++++|+
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~   92 (118)
T 1elw_A           39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KPDWGKGYSRKAAALEFLNRFEEAK   92 (118)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHH
Confidence            34566799999999999999999999986        4555678999999999999999999

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.54  E-value=7.5e-05  Score=55.71  Aligned_cols=62  Identities=11%  Similarity=-0.097  Sum_probs=50.7

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .|..+.+  .+..|.++...|++++|++.|.+|+.+        .|+-...+.+||.+|..+|++++|+    .+.
T Consensus        47 ~P~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~la~~~~~~g~~~~A~----~~~  108 (121)
T 1hxi_A           47 EPEREEA--WRSLGLTQAENEKDGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNANAAL----ASL  108 (121)
T ss_dssp             STTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred             CCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH----HHH
Confidence            4444444  455699999999999999999999986        3444568899999999999999999    555

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.54  E-value=8.6e-05  Score=51.54  Aligned_cols=51  Identities=12%  Similarity=0.242  Sum_probs=31.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +..|..+..+|++++|.++|.+++.+        .|+....+.++|.+|+.+|++++|+
T Consensus        10 ~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~   60 (112)
T 2kck_A           10 YLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAV   60 (112)
T ss_dssp             GGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHH
Confidence            34466666666666666666666654        2333445666666666666666666

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.51  E-value=0.00014  Score=65.10  Aligned_cols=65  Identities=12%  Similarity=0.025  Sum_probs=57.0

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAV--------CGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV--------~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+..+.+.|..+..+|++++|++.|++|+.+..+.        ....+|.-+.+|.++|.+|+.+|++++|+
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  293 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV  293 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            456678888999999999999999999999987763        12378899999999999999999999999

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.49  E-value=0.00011  Score=55.44  Aligned_cols=53  Identities=13%  Similarity=-0.011  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -.+..|.++..+|++++|++.|.+|+.+     .|.+|   ..+.++|.+|..+|++++|+
T Consensus        54 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~  106 (142)
T 2xcb_A           54 YFLGLGACRQSLGLYEQALQSYSYGALM-----DINEP---RFPFHAAECHLQLGDLDGAE  106 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCT---HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCc---HHHHHHHHHHHHcCCHHHHH
Confidence            3455699999999999999999999986     35555   56899999999999999999

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.49  E-value=0.0004  Score=56.68  Aligned_cols=61  Identities=13%  Similarity=0.092  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-....|..+...|++++|.+++.+++.+..+.  ..+|..+.++..+|.+|..+|++++|+
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~  103 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAI  103 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHccCHHHHH
Confidence            4556778999999999999999999999999887  567899999999999999999999999

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.48  E-value=0.00019  Score=61.35  Aligned_cols=66  Identities=8%  Similarity=-0.042  Sum_probs=55.3

Q ss_pred             cCchhHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          123 CTSADGRTLLES-SKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       123 p~s~~a~~lle~-g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-..|-+.++. |.++..+|++++|.+.|.+|+.++.+. | ..++.+.+|+++|.+|..+|++++|+
T Consensus        30 ~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~~~~A~   96 (307)
T 2ifu_A           30 PDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN-R-SLFHAAKAFEQAGMMLKDLQRMPEAV   96 (307)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCGGGGH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            334555555555 588999999999999999999999886 3 46688999999999999999999999

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.46  E-value=0.00019  Score=51.50  Aligned_cols=54  Identities=11%  Similarity=0.051  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-.+..|.++..+|++++|.+++.+++.+        .|+-+.++.++|.+|..+|++++|+
T Consensus        51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~  104 (133)
T 2lni_A           51 KLYSNRAACYTKLLEFQLALKDCEECIQL--------EPTFIKGYTRKAAALEAMKDYTKAM  104 (133)
T ss_dssp             HHHHHHHHHHTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHHhhHHHHH
Confidence            44566799999999999999999999986        4556678999999999999999999

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.46  E-value=0.00012  Score=56.46  Aligned_cols=58  Identities=9%  Similarity=-0.003  Sum_probs=48.4

Q ss_pred             cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      |..+.+...  .|.++...|++++|+..|.+|+.+        .|+-..++.+||.+|..+|++++|+
T Consensus        62 p~~~~a~~~--lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa  119 (150)
T 4ga2_A           62 ERDPKAHRF--LGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRA  119 (150)
T ss_dssp             TTCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred             CCCHHHHHH--HHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHH
Confidence            444555444  599999999999999999999986        4556678999999999999998876

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.44  E-value=0.00029  Score=49.82  Aligned_cols=54  Identities=11%  Similarity=0.105  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-.+..|.++..+|++++|.+.+.+++.+        +|+...++..+|.+|..+|++++|+
T Consensus        47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~  100 (131)
T 2vyi_A           47 VYFCNRAAAYSKLGNYAGAVQDCERAICI--------DPAYSKAYGRMGLALSSLNKHVEAV  100 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhc--------CccCHHHHHHHHHHHHHhCCHHHHH
Confidence            34566799999999999999999999985        4555678999999999999999999

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.42  E-value=0.00012  Score=71.76  Aligned_cols=53  Identities=15%  Similarity=0.139  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -..+.|.++..+|++++|++.|++|+.+        +|+-+.+|++||.+|..+|++++|+
T Consensus        79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi  131 (723)
T 4gyw_A           79 AYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAI  131 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            3455699999999999999999999986        6778889999999999999999998

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.42  E-value=0.00025  Score=60.29  Aligned_cols=72  Identities=14%  Similarity=0.104  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI  207 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~  207 (222)
                      +.-.+..|..+...|++++|.+++.+|+.+..+.  ..+|..+.++..+|.+|..+|++++|+    .+.      ++|+
T Consensus        47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~----~~~------~~al  114 (406)
T 3sf4_A           47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAI----VCC------QRHL  114 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHcCCHHHHH----HHH------HHHH
Confidence            4567778999999999999999999999999887  568999999999999999999999999    655      4565


Q ss_pred             EEee
Q 027539          208 IITS  211 (222)
Q Consensus       208 ~i~e  211 (222)
                      .+.+
T Consensus       115 ~~~~  118 (406)
T 3sf4_A          115 DISR  118 (406)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.42  E-value=0.00025  Score=55.72  Aligned_cols=55  Identities=15%  Similarity=0.187  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-.+..|.++..+|++++|++.|.+|+.+        +|+.+.++.++|.+|..+|++++|+
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A~   91 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKHLAVAYFQRGMLYYQTEKYDLAI   91 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcccHHHHH
Confidence            345677799999999999999999999986        4666789999999999999999999

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.41  E-value=0.00015  Score=57.31  Aligned_cols=55  Identities=13%  Similarity=0.081  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-....|.++...|++++|++.+.+++.+        +|+...++..+|.+|..+|++++|+
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~  142 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAK  142 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHH
Confidence            355667799999999999999999999987        5677789999999999999999999

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.41  E-value=0.0003  Score=52.47  Aligned_cols=55  Identities=16%  Similarity=0.039  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-.+..|.++...|++++|.+.+.+++.+        +|+.+.++.++|.+|..+|++++|+
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~  101 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYIKGYYRRAASNMALGKFRAAL  101 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhccHHHHH
Confidence            344566799999999999999999999986        4566778999999999999999999

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.40  E-value=0.00011  Score=62.22  Aligned_cols=74  Identities=15%  Similarity=0.073  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCc
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG---PYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKS  205 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G---~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~  205 (222)
                      .-....|.++..+|++++|.+.|.+++.+..+..|   ..+|..+..+..||.+|..+|++++|.    ...      ++
T Consensus       286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~------~~  355 (368)
T 1fch_A          286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG----AAD------AR  355 (368)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH----HHH------TT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH----HhH------HH
Confidence            34555699999999999999999999999877643   456788999999999999999999999    777      66


Q ss_pred             eEEEeee
Q 027539          206 SIIITSF  212 (222)
Q Consensus       206 a~~i~e~  212 (222)
                      ++.+-.+
T Consensus       356 ~l~~~~~  362 (368)
T 1fch_A          356 DLSTLLT  362 (368)
T ss_dssp             CHHHHHH
T ss_pred             HHHHHHH
Confidence            6654433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.40  E-value=0.00034  Score=60.35  Aligned_cols=70  Identities=13%  Similarity=0.151  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI  207 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~  207 (222)
                      +.-.+..|.++..+|++++|.+++.+++.+.+++  ..+|..+.++..+|.+|..+|++++|+    .++      ++|+
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~------~~al  153 (411)
T 4a1s_A           86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAA----ICC------ERHL  153 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHCCCHHHHH----HHH------HHHH
Confidence            4456677999999999999999999999999887  468999999999999999999999999    665      4565


Q ss_pred             EE
Q 027539          208 II  209 (222)
Q Consensus       208 ~i  209 (222)
                      .+
T Consensus       154 ~~  155 (411)
T 4a1s_A          154 TL  155 (411)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.40  E-value=0.0002  Score=56.67  Aligned_cols=63  Identities=16%  Similarity=0.109  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH----------HHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRT----------TASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpe----------vA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+..+.+.|..+..+|++++|+++|.+|+.+..+  .+.++.          .+.++.++|.+|..+|++++|+
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  108 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH--TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI  108 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT--CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            45677889999999999999999999999986543  111111          2589999999999999999999

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.39  E-value=0.00026  Score=51.82  Aligned_cols=55  Identities=13%  Similarity=0.085  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..-.+..|.++...|++++|++.+.+++.+        +|+...++.++|.+|+.+|++++|+
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~  119 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEK--------DGGDVKALYRRSQALEKLGRLDQAV  119 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------CccCHHHHHHHHHHHHHcCCHHHHH
Confidence            455667799999999999999999999986        4555788999999999999999999

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.39  E-value=0.00038  Score=48.81  Aligned_cols=55  Identities=20%  Similarity=0.375  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +......|..+...|++++|.+++.+++..        .|+....+..+|.+|..+|++++|+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~   63 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAI   63 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHH
Confidence            455667788999999999999999998875        2444567888888899999988888

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.38  E-value=0.00025  Score=60.25  Aligned_cols=62  Identities=15%  Similarity=0.075  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+......|.++..+|++++|.+++.+++.+..+.-  .++..+.++..||.+|..+|++++|+
T Consensus       266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~  327 (406)
T 3sf4_A          266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN--DRIGEGRACWSLGNAYTALGNHDQAM  327 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            355566678888888888888888888888887753  36778888888888888888888888

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.38  E-value=0.00019  Score=49.68  Aligned_cols=54  Identities=15%  Similarity=0.110  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHHHc-CChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRT--TASTYSLLAVVLYHT-GDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpe--vA~~y~~LA~vy~~~-Gd~~eAi  190 (222)
                      .-.+..|.++..+|++++|.+.+.+++.+        .|+  ...++.++|.+|..+ |++++|+
T Consensus        41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~A~   97 (112)
T 2kck_A           41 KYWLMKGKALYNLERYEEAVDCYNYVINV--------IEDEYNKDVWAAKADALRYIEGKEVEAE   97 (112)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------SCCTTCHHHHHHHHHHHTTCSSCSHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccchHHHHHHHHHHHHHHhCCHHHHH
Confidence            34566799999999999999999999975        344  567899999999999 9999999

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.36  E-value=0.00011  Score=59.65  Aligned_cols=58  Identities=17%  Similarity=0.057  Sum_probs=48.7

Q ss_pred             cCchhHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          123 CTSADGRTLLESSKIALDK-----------GKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       123 p~s~~a~~lle~g~~~l~q-----------G~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      |..+.+.  +..|.++..+           |++++|++.|.+++.+        .|+-+..+.++|.+|..+|++++|+
T Consensus        70 P~~~~a~--~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~  138 (217)
T 2pl2_A           70 PRYLGGY--MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAE  138 (217)
T ss_dssp             TTCHHHH--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCcHHHH--HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHH
Confidence            4444444  4459999999           9999999999999987        5677788999999999999999998

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.35  E-value=0.00045  Score=48.43  Aligned_cols=53  Identities=21%  Similarity=0.383  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+..|.++...|++++|..++.+++.+        +|+....+..+|.+|..+|++++|+
T Consensus        45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~   97 (125)
T 1na0_A           45 AWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAI   97 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHH
Confidence            4566799999999999999999999875        3455678899999999999999999

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.33  E-value=0.00046  Score=56.03  Aligned_cols=60  Identities=13%  Similarity=0.168  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQ  191 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~  191 (222)
                      .+..+++.|..++.+|++++|.+.|.+++..     .|..|.....+..+|.+|+.+|++++|+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~   62 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQA   62 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            3567888999999999999999999999875     47778888999999999999999999993

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.32  E-value=0.00015  Score=67.03  Aligned_cols=76  Identities=13%  Similarity=-0.005  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHH------------
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVV------------  195 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~------------  195 (222)
                      +.-....|.++..+|++++|++.|.+|+.+        +|+.+.++.++|.+|..+|++++|+.+...            
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  111 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK  111 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            444556699999999999999999999986        788899999999999999999999822110            


Q ss_pred             -----h--hhhhCCCCceEEEee
Q 027539          196 -----F--QCQLGDSKSSIIITS  211 (222)
Q Consensus       196 -----~--~~~~~~~~~a~~i~e  211 (222)
                           .  +...|++++|+...+
T Consensus       112 ~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1          112 MKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHhcccc
Confidence                 1  234577788888777

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.31  E-value=0.00047  Score=56.76  Aligned_cols=52  Identities=10%  Similarity=-0.026  Sum_probs=28.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+..|..+..+|++++|..+|.+++..        +|+.+.++..+|.+|..+|++++|+
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~   75 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAI   75 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            445556666666666666666555542        2334445555555555555555555

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.27  E-value=0.00019  Score=61.06  Aligned_cols=94  Identities=15%  Similarity=0.127  Sum_probs=69.5

Q ss_pred             HHHHHHceeeeccccCCCCCC-------CCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 027539           84 GLCHKVGLELVPRDYDMDCPN-------PFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALA  156 (222)
Q Consensus        84 ~ic~K~GIQl~~rdY~f~~~~-------~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~  156 (222)
                      ++|.++||+-.+.-+.|....       +.+++.+   .-.++...|.  .....++.|..+..+|++++|.++|.+++.
T Consensus        71 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~~l---~~~l~~~lp~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~  145 (287)
T 3qou_A           71 MIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI---RALLDXVLPR--EEELXAQQAMQLMQESNYTDALPLLXDAWQ  145 (287)
T ss_dssp             HHHHTTTCCSSSEEEEEETTEEEEEEESCCCHHHH---HHHHHHHSCC--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCeEEEEECCEEEEEeeCCCCHHHH---HHHHHHHcCC--chhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            788899998777666553221       2222222   2334444443  455678899999999999999999999997


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          157 RMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       157 i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +        +|+-+..+..||.+|..+|++++|+
T Consensus       146 ~--------~P~~~~a~~~la~~~~~~g~~~~A~  171 (287)
T 3qou_A          146 L--------SNQNGEIGLLLAETLIALNRSEDAE  171 (287)
T ss_dssp             H--------TTSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             h--------CCcchhHHHHHHHHHHHCCCHHHHH
Confidence            5        4555678999999999999999999

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.27  E-value=0.00039  Score=56.10  Aligned_cols=57  Identities=21%  Similarity=0.221  Sum_probs=49.4

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+...+..|..+..+|++++|.++|.+++.+        +|+.+.++..||.+|..+|++++|+
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~   97 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAY   97 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHccCHHHHH
Confidence            34566777799999999999999999999986        4556678999999999999999999

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.27  E-value=0.0004  Score=59.20  Aligned_cols=56  Identities=14%  Similarity=0.063  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ++......|.++..+|++++|.++|.+++.+        +|+.+.++++||.+|..+|++++|+
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~  267 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAV  267 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            4445566688888888888888888888875        4555667788888888888887777

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.27  E-value=0.00027  Score=56.91  Aligned_cols=50  Identities=10%  Similarity=0.027  Sum_probs=46.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          133 ESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       133 e~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.|.++..+|++++|++.|.+++.+        +|+-+.++.+||.+|..+|++++|+
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~  108 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQK--------APNNVDCLEACAEMQVCRGQEKDAL  108 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            3799999999999999999999986        5777788999999999999999999

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.26  E-value=0.0002  Score=56.38  Aligned_cols=62  Identities=8%  Similarity=0.103  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--------HhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIA--------VCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eq--------V~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-.+..|.++..+|++++|++.|.+++.+...        .-...+|..+.++.++|.+|+.+|++++|+
T Consensus        72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  141 (213)
T 1hh8_A           72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE  141 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence            34566799999999999999999999986422        111267788899999999999999999999

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.26  E-value=0.00039  Score=56.33  Aligned_cols=68  Identities=21%  Similarity=0.260  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS  206 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a  206 (222)
                      .+......|.++...|++++|++.|.+++.+        +|+.+.++..+|.+|..+|++++|+    .+.      ++|
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~----~~~------~~a  134 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAI----QYM------EKQ  134 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHH----HHH------GGG
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHH----HHH------HHH
Confidence            3444567799999999999999999999984        5556678999999999999999999    777      677


Q ss_pred             EEEeee
Q 027539          207 IIITSF  212 (222)
Q Consensus       207 ~~i~e~  212 (222)
                      +.+...
T Consensus       135 l~~~~~  140 (272)
T 3u4t_A          135 IRPTTT  140 (272)
T ss_dssp             CCSSCC
T ss_pred             hhcCCC
Confidence            766443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.00082  Score=53.31  Aligned_cols=61  Identities=13%  Similarity=0.173  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-.+..|.++...|++++|.+.+.+++.+..+ .++.++..+.++..+|.+|..+|++++|+
T Consensus        39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~   99 (258)
T 3uq3_A           39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGRE-MRADYKVISKSFARIGNAYHKLGDLKKTI   99 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-cccchHHHHHHHHHHHHHHHHcccHHHHH
Confidence            44667799999999999999999999998765 35677888999999999999999999999

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.24  E-value=0.00046  Score=55.20  Aligned_cols=58  Identities=14%  Similarity=0.018  Sum_probs=40.7

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+...++..|..+..+|++++|++.|.+++.+..    +.++   ..+.++|.+|+.+|++++|+
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~---~~~~~~~~~~~~~~~~~~A~   62 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN----NQDS---VTAYNCGVCADNIKKYKEAA   62 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCCH---HHHHHHHHHHHHTTCHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC----CCCc---HHHHHHHHHHHHhhcHHHHH
Confidence            4457778888888888888888888888887642    0122   34555777777777777776

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.22  E-value=0.00039  Score=57.33  Aligned_cols=62  Identities=15%  Similarity=0.144  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYH-RTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~H-pevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ......|.++..+|++++|.+++.+++.+..+..++.. |..+.++.++|.+|..+|++++|+
T Consensus       194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  256 (330)
T 3hym_B          194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL  256 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence            44566799999999999999999999999888776655 666789999999999999999998

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.21  E-value=0.00034  Score=61.15  Aligned_cols=55  Identities=18%  Similarity=0.116  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-.++.|.++..+|++++|++.|.+|+.+        .|+-+.+|.++|.+|..+|++++|+
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~  250 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELAR  250 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence            456677899999999999999999999987        5677889999999999999999999

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.19  E-value=0.00063  Score=57.44  Aligned_cols=56  Identities=16%  Similarity=0.081  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ++......|.++..+|++++|.++|.+++.+        +|+.+.++.++|.+|..+|++++|+
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence            4556667799999999999999999999876        4566678888888888899888888

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.18  E-value=0.00055  Score=54.74  Aligned_cols=54  Identities=15%  Similarity=0.055  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ...+..|.++...|++++|++.|.+|+.        .+|+.+.++..+|.+|..+|++++|+
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~~~~~~A~   96 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIK--------KNYNLANAYIGKSAAYRDMKNNQEYI   96 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--------TTCSHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHH--------hCcchHHHHHHHHHHHHHcccHHHHH
Confidence            4455579999999999999999999994        57888899999999999999999999

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.18  E-value=0.00051  Score=55.64  Aligned_cols=53  Identities=17%  Similarity=0.102  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+..|..+..+|++++|...|.+++.        ..|+-+..+.++|.+|..+|++++|+
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~p~~~~a~~~lg~~~~~~g~~~~A~   59 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERALK--------ENPQDPEALYWLARTQLKLGLVNPAL   59 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT--------TSSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            456679999999999999999999985        46777889999999999999999999

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.17  E-value=0.00035  Score=59.56  Aligned_cols=78  Identities=10%  Similarity=0.017  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCC
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT----ASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDS  203 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev----A~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~  203 (222)
                      +......|.++..+|++++|.+.|.+|+.+..+..|+.|++.    +..+..|+.++..+|+.+.|.    ...      
T Consensus       281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~----~~~------  350 (365)
T 4eqf_A          281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ----AAN------  350 (365)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH----HHH------
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH----HHH------
Confidence            344556699999999999999999999999999999888776    789999999999999999998    666      


Q ss_pred             CceEEEeeeech
Q 027539          204 KSSIIITSFCTE  215 (222)
Q Consensus       204 ~~a~~i~e~~~~  215 (222)
                      ++++.+.++..+
T Consensus       351 ~~~l~~~~~~~~  362 (365)
T 4eqf_A          351 LGDLDVLLRAFN  362 (365)
T ss_dssp             TTCCGGGTTTTT
T ss_pred             HhhHHHHHHhcC
Confidence            556555544433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.16  E-value=0.00036  Score=56.03  Aligned_cols=55  Identities=22%  Similarity=0.128  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-.+..|..+..+|++++|.++|.+++.+        .|+.+.++..+|.+|..+|++++|+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~   91 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLAD   91 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHH
Confidence            556677799999999999999999999876        3556778888999999999998888

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.16  E-value=0.00017  Score=63.06  Aligned_cols=65  Identities=12%  Similarity=0.079  Sum_probs=53.5

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-------GPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-------G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+....+.|..+..+|++++|++.|.+|+.+...-.       ....|..+.+|.+||.+|..+|++++|+
T Consensus       145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  216 (336)
T 1p5q_A          145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI  216 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3566778889999999999999999999998864321       1123555899999999999999999999

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.14  E-value=0.00063  Score=56.47  Aligned_cols=56  Identities=25%  Similarity=0.202  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +++..+..|..+..+|++++|+++|.+++..        +|+.+.++..+|.+|..+|++++|+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~   57 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAAL   57 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHH
Confidence            5667788899999999999999999888874        4445567888888888888888888

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.13  E-value=0.00032  Score=54.69  Aligned_cols=57  Identities=18%  Similarity=0.145  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      +..++.|..++.+|++++|...|.+++.+        +|+-+..+..||.+|..+|++++|+    .+.
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~----~~~   63 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQ----ELL   63 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHH----HHH
Confidence            45788899999999999999999999874        5777788999999999999999999    555

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.13  E-value=0.00067  Score=54.67  Aligned_cols=53  Identities=13%  Similarity=0.016  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -....|.++...|++++|.++|.+++.+        +|+-..++..+|.+|..+|++++|+
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~  131 (275)
T 1xnf_A           79 VFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQ  131 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHH
Confidence            3555699999999999999999999986        4555688999999999999999999

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.00059  Score=54.19  Aligned_cols=53  Identities=9%  Similarity=0.066  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -.+..|.++...|++++|.+.+.+++.+        .|+.+.++..+|.+|..+|++++|+
T Consensus       175 ~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~  227 (258)
T 3uq3_A          175 GYSNRAAALAKLMSFPEAIADCNKAIEK--------DPNFVRAYIRKATAQIAVKEYASAL  227 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3445577777777777777777777764        3455566777777777777777777

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.12  E-value=0.00048  Score=56.76  Aligned_cols=65  Identities=20%  Similarity=0.270  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI  207 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~  207 (222)
                      +.-....|.++...|++++|.+.+.+++.+        +|+.+.++.+||.+|..+|++++|+    .+.      ++|+
T Consensus       236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~----~~~------~~al  297 (330)
T 3hym_B          236 EPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAV----DYF------HTAL  297 (330)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHHH----HHH------HTTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHHH----HHH------HHHH
Confidence            445566799999999999999999999987        4566778999999999999999999    666      5666


Q ss_pred             EEe
Q 027539          208 IIT  210 (222)
Q Consensus       208 ~i~  210 (222)
                      .+.
T Consensus       298 ~~~  300 (330)
T 3hym_B          298 GLR  300 (330)
T ss_dssp             TTC
T ss_pred             ccC
Confidence            554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.11  E-value=0.00068  Score=47.76  Aligned_cols=51  Identities=22%  Similarity=0.401  Sum_probs=32.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +..|..+...|++++|..++.+++..        +|+...++..+|.++...|++++|+
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~   55 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAI   55 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHH
Confidence            34466666777777777777666653        2333455666666666666666666

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.10  E-value=0.0009  Score=53.61  Aligned_cols=55  Identities=13%  Similarity=0.099  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -....|..+..+|++++|.+++.+++.      .+.+|+.+..+..+|.+|..+|++++|+
T Consensus       107 ~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~  161 (252)
T 2ho1_A          107 VLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAK  161 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            345568889999999999999888876      5678888889999999999999998888

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.08  E-value=0.00021  Score=52.14  Aligned_cols=46  Identities=26%  Similarity=0.303  Sum_probs=37.1

Q ss_pred             hcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          140 DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       140 ~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+|++++|++.|.+|+.+     ++..|+.+.++.+||.+|+.+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~   47 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAE   47 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence            468899999999999873     3447999999999999999999999999

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.08  E-value=0.00013  Score=59.24  Aligned_cols=69  Identities=13%  Similarity=0.095  Sum_probs=48.4

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC-----------Chh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLE---DAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG-----------DFN  187 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e---~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G-----------d~~  187 (222)
                      +|..+++...|  |.++...|+++   +|++++.+|+..|++..- +.|+-+.+|++||.+|+.+|           +++
T Consensus        32 ~P~~aea~~n~--G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~-ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~  108 (158)
T 1zu2_A           32 NPLDADNLTRW--GGVLLELSQFHSISDAKQMIQEAITKFEEALL-IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFD  108 (158)
T ss_dssp             CTTCHHHHHHH--HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHH--HHHHHHhcccchhhhhHhHHHHHHHHHHHHHH-hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHH
Confidence            44555555544  88888877654   455666666666666552 36777788999999999986           899


Q ss_pred             hHhhchHHhh
Q 027539          188 QVRQSSVVFQ  197 (222)
Q Consensus       188 eAi~~~~~~~  197 (222)
                      +|+    .++
T Consensus       109 eA~----~~~  114 (158)
T 1zu2_A          109 LAT----QFF  114 (158)
T ss_dssp             HHH----HHH
T ss_pred             HHH----HHH
Confidence            999    555

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.05  E-value=0.00052  Score=58.26  Aligned_cols=54  Identities=11%  Similarity=0.059  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-....|.++...|++++|++.+.+|+.+        +|+...++.++|.+|..+|++++|+
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~   92 (281)
T 2c2l_A           39 VYYTNRALCYLKMQQPEQALADCRRALEL--------DGQSVKAHFFLGQCQLEMESYDEAI   92 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            34556699999999999999999999964        6778899999999999999999999

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.03  E-value=0.0014  Score=49.01  Aligned_cols=54  Identities=9%  Similarity=0.159  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-....|.++..+|++++|.+++.+++.+        .|+...++..+|.+|..+|++++|+
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~   96 (186)
T 3as5_A           43 DVALHLGIAYVKTGAVDRGTELLERSLAD--------APDNVKVATVLGLTYVQVQKYDLAV   96 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHH
Confidence            34555688888888888888888888776        4555667778888888888888887

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.03  E-value=0.00061  Score=59.67  Aligned_cols=53  Identities=9%  Similarity=0.114  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -.++.|.++...|++++|++.|.+|+.+        +|+-+.+|.++|.+|..+|++++|+
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~  284 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTE--------EEKNPKALFRRGKAKAELGQMDSAR  284 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            4566799999999999999999999985        5677889999999999999999999

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.00  E-value=0.00056  Score=61.13  Aligned_cols=56  Identities=14%  Similarity=0.060  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+.-.++.|.++..+|++++|++.+.+|+.+        +|+-+.+|.++|.+|+.+|++++|+
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~  327 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--------DPSNTKALYRRAQGWQGLKEYDQAL  327 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHccCHHHHH
Confidence            3445667799999999999999999999974        6788899999999999999999999

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.00  E-value=0.0014  Score=46.05  Aligned_cols=52  Identities=21%  Similarity=0.388  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+..|.++...|++++|..++.+++.+        .|+...++..+|.+|..+|++++|+
T Consensus        72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~  123 (136)
T 2fo7_A           72 WYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAI  123 (136)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHH
Confidence            455699999999999999999999875        3444567889999999999999999

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.99  E-value=0.0013  Score=49.14  Aligned_cols=53  Identities=17%  Similarity=0.055  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -.+..|..+...|++++|.+++.+++.+        +|+....+..+|.+|..+|++++|+
T Consensus        78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~  130 (186)
T 3as5_A           78 VATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAI  130 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHH
Confidence            3455688888888888888888888876        4445567788888888888888887

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.99  E-value=0.0012  Score=57.55  Aligned_cols=60  Identities=25%  Similarity=0.189  Sum_probs=50.1

Q ss_pred             cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ....++...+..|..+..+|++++|.++|.+++..        +|+.+.++..+|.+|..+|++++|+
T Consensus        21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~   80 (450)
T 2y4t_A           21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAAL   80 (450)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHH
Confidence            34567777888899999999999999999999875        5666888889999999999998888

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.98  E-value=0.00028  Score=64.55  Aligned_cols=65  Identities=12%  Similarity=0.108  Sum_probs=53.5

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-------GPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-------G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+....+.|..+..+|++++|+..|.+|+.+...-.       ....+..+.+|+++|.+|..+|++++|+
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  337 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV  337 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            4566778889999999999999999999999764321       0123455899999999999999999999

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.98  E-value=0.0016  Score=50.54  Aligned_cols=56  Identities=7%  Similarity=-0.062  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ++...+..|..+...|++++|.+++.+++.+        +|+...++..+|.+|..+|++++|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~   62 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQ   62 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHH
Confidence            3444556677788888888888888777764        3444567777777777777777777

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=96.98  E-value=0.0011  Score=54.25  Aligned_cols=58  Identities=7%  Similarity=-0.041  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH--------cCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH--------TGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~--------~Gd~~eAi  190 (222)
                      ..-.+..|.++..+|++++|++.|.+++.++     |.+|....++..+|.+|+.        +|++++|+
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~  117 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIY-----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAI  117 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence            3456677999999999999999999999875     7789999999999999999        99999999

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.97  E-value=0.00091  Score=55.01  Aligned_cols=72  Identities=10%  Similarity=0.058  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCc
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRT----TASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKS  205 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpe----vA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~  205 (222)
                      ..+..|.++..+|++++|.+.+.+++.+..+.-++.+..    ...++..+|.+|..+|++++|.    .+.      ++
T Consensus       242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~------~~  311 (327)
T 3cv0_A          242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE----LTY------AQ  311 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH----HHT------TC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH----HHH------HH
Confidence            455669999999999999999999998765543333322    7889999999999999999999    776      56


Q ss_pred             eEEEee
Q 027539          206 SIIITS  211 (222)
Q Consensus       206 a~~i~e  211 (222)
                      ++.+..
T Consensus       312 ~l~~~~  317 (327)
T 3cv0_A          312 NVEPFA  317 (327)
T ss_dssp             CSHHHH
T ss_pred             HHHhcc
Confidence            665443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.96  E-value=7e-05  Score=69.21  Aligned_cols=55  Identities=13%  Similarity=0.167  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ++.+.+.|..+..+|++++|+++|.+|+.+        +|+.+.++.++|.+|..+|++++|+
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~   60 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYAL   60 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHH
Confidence            334455678888999999999999999987        7888999999999999999999999

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=96.93  E-value=0.0027  Score=51.41  Aligned_cols=54  Identities=15%  Similarity=0.116  Sum_probs=49.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +..|..+..+|++++|+..|++++..+     |..|....++..+|.+|..+|++++|+
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~  204 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAE  204 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence            567999999999999999999999876     668888999999999999999999999

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.92  E-value=0.00015  Score=57.43  Aligned_cols=58  Identities=16%  Similarity=0.169  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      +...+..|.++...|++++|.+.+.+++.+        .|+.+.++..+|.+|..+|++++|+    .+.
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~----~~~  114 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALEL--------DSSAATAYYGAGNVYVVKEMYKEAK----DMF  114 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCcchHHHHHHHHHHHHhccHHHHH----HHH
Confidence            344555688888888888888888888876        4555677888888888888888888    555

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.90  E-value=0.0017  Score=49.83  Aligned_cols=53  Identities=15%  Similarity=0.127  Sum_probs=43.3

Q ss_pred             HHHHHHHH-HHhcCCh--HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKI-ALDKGKL--EDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~-~l~qG~~--e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -.+..|.+ +..+|++  ++|...+.+++.+        +|+-..++.++|.+|..+|++++|+
T Consensus        80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~  135 (177)
T 2e2e_A           80 LYAALATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAI  135 (177)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHH
Confidence            34556888 7788888  9999999998876        4555677889999999999999999

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.90  E-value=0.0018  Score=50.17  Aligned_cols=55  Identities=16%  Similarity=0.111  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDK-GKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~q-G~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .....|..+... |++++|.+++.+++.      .+.+|+....+..+|.+|..+|++++|+
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~  133 (225)
T 2vq2_A           78 INNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAE  133 (225)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence            345568999999 999999999999887      4677888889999999999999999998

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.87  E-value=0.00074  Score=54.63  Aligned_cols=65  Identities=11%  Similarity=-0.044  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          129 RTLLESSKIALDKGK---LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       129 ~~lle~g~~~l~qG~---~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      ...+..|.++...|+   +++|.+.|.+++.+.++.-++..+..+.+|..||.+|..+|++++|+    .+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~----~~~  244 (272)
T 3u4t_A          177 IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD----AAW  244 (272)
T ss_dssp             HHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred             HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH----HHH
Confidence            445556889888898   89999999999999877655445667899999999999999999999    666

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.86  E-value=0.001  Score=60.66  Aligned_cols=55  Identities=15%  Similarity=0.090  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-.++.|.+++..|++++|+..|.+|+.+        +|+-+.+|.++|.+|..+|++++|+
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~  371 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAK  371 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHH
Confidence            455667899999999999999999999986        4667889999999999999999999

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.86  E-value=0.0013  Score=54.62  Aligned_cols=52  Identities=8%  Similarity=-0.026  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ....|.++...|++++|.+.|.+++.+        +|+....+..+|.+|..+|++++|+
T Consensus       275 ~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~  326 (359)
T 3ieg_A          275 KERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAI  326 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHH
Confidence            455688999999999999999999886        5666778999999999999999999

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=96.86  E-value=0.00067  Score=62.07  Aligned_cols=57  Identities=16%  Similarity=0.193  Sum_probs=50.8

Q ss_pred             hhHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKL-EDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~-e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+.-.+..|..+..+|++ ++|+++|.+|+.+        .|+-+.++.+||.+|+.+|++++|+
T Consensus       100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~  157 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAH  157 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            3456677789999999999 9999999999986        4666789999999999999999999

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=96.84  E-value=0.0012  Score=56.80  Aligned_cols=49  Identities=20%  Similarity=0.218  Sum_probs=28.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|.++..+|++++|.++|.+++.+        +|+-+.++++||.+|..+|++++|+
T Consensus       277 l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~  325 (388)
T 1w3b_A          277 LANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAV  325 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHH
Confidence            355666666666666666666544        2333445556666666666666655

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.84  E-value=0.00086  Score=59.62  Aligned_cols=57  Identities=19%  Similarity=0.245  Sum_probs=50.5

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+..+++.|..+..+|++++|+++|++++.+        +|+.+.++.++|.+|..+|++++|+
T Consensus        23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~   79 (537)
T 3fp2_A           23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--------DPNEPVFYSNISACYISTGDLEKVI   79 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHH
Confidence            46788899999999999999999999999986        4666789999999999999999999

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.80  E-value=0.0019  Score=59.63  Aligned_cols=54  Identities=9%  Similarity=0.057  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ...+..|.++..+|++++|.+.|.+|+.+        +|+-+.++.+||.+|..+|++++|+
T Consensus        58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~  111 (568)
T 2vsy_A           58 EAVARLGRVRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAA  111 (568)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            34555689999999999999999999886        4566778889999999999999988

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=96.80  E-value=0.0014  Score=56.37  Aligned_cols=55  Identities=20%  Similarity=0.266  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +......|.++..+|++++|.++|.+++.+        +|+...+|.+||.+|..+|++++|+
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~  121 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAV  121 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHH
Confidence            344555699999999999999999999875        5777778899999999999998888

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.80  E-value=0.0025  Score=50.30  Aligned_cols=60  Identities=13%  Similarity=0.098  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      ..+.-....|.++..+|++++|.+++.+++.+.     |.+   ...+..+|.+|..+|++++|+    .+.
T Consensus        89 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~----~~~  148 (243)
T 2q7f_A           89 SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-----MEN---GDLFYMLGTVLVKLEQPKLAL----PYL  148 (243)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----CCS---HHHHHHHHHHHHHTSCHHHHH----HHH
T ss_pred             cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhccHHHHH----HHH
Confidence            345556667888999999999999999988752     334   456888999999999999999    666

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.0016  Score=56.66  Aligned_cols=62  Identities=8%  Similarity=0.075  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .++-....|+++..+|++++|.+++.+++......  ..+|+.+.+|.+++++|..+|++++|.
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~  195 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSK  195 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHH
Confidence            35556667999999999999999999998776553  458999999999999999999999999

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.0018  Score=56.95  Aligned_cols=55  Identities=24%  Similarity=0.275  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .++.+++.|..+..+|++++|+.+|++++.+.        |+ +.++..+|.+|..+|++++|+
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~-~~~~~~la~~~~~~g~~~~A~   59 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--------ED-PVFYSNLSACYVSVGDLKKVV   59 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------cc-HHHHHhHHHHHHHHhhHHHHH
Confidence            56778889999999999999999999998864        33 567888888888888888888

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.68  E-value=0.0022  Score=55.77  Aligned_cols=54  Identities=9%  Similarity=0.011  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ......|.++...|++++|++++.+++.+        +|+.+.++..+|.+|..+|++++|+
T Consensus       296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~  349 (450)
T 2y4t_A          296 RSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAI  349 (450)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHH
Confidence            34555678888888888888888888765        5666677888888888888888888

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.62  E-value=0.0042  Score=56.19  Aligned_cols=60  Identities=18%  Similarity=0.166  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT-ASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev-A~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ......|..+...|++++|.++|.+++.+..+.  +.+|+. +.+|..|+.+|..+|++++|+
T Consensus       476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~  536 (597)
T 2xpi_A          476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAI  536 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence            335556999999999999999999999987654  456664 899999999999999999998

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.62  E-value=0.0033  Score=45.73  Aligned_cols=59  Identities=15%  Similarity=0.096  Sum_probs=46.7

Q ss_pred             ccCchhHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          122 GCTSADGRTLLESSKIALDKGK---LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~---~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|..++.  +...|++.+..+.   .++|..++.+||.        ..|+-.+++..||.+++..|+|++|+
T Consensus         2 ~p~~~~~--~~~~a~al~~~~~~~~~~~A~~~l~~AL~--------~dp~~~rA~~~lg~~~~~~g~y~~Ai   63 (93)
T 3bee_A            2 NAVTATQ--LAAKATTLYYLHKQAMTDEVSLLLEQALQ--------LEPYNEAALSLIANDHFISFRFQEAI   63 (93)
T ss_dssp             CCCCHHH--HHHHHHHHHHTTTTCCCHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCCHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHH--------HCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence            3455544  4445777654443   7999999999998        57777889999999999999999999

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.59  E-value=0.0056  Score=52.37  Aligned_cols=61  Identities=8%  Similarity=-0.029  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-+...|..+..+|++++|.+++.+|+.+..+. | .....+.++.++|.+|..+|++++|+
T Consensus        53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~~la~~~~~~G~~~~A~  113 (373)
T 1hz4_A           53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-D-VWHYALWSLIQQSEILFAQGFLQTAW  113 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc-C-cHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            3456667999999999999999999999998883 3 34467889999999999999999998

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=96.58  E-value=0.002  Score=58.92  Aligned_cols=56  Identities=7%  Similarity=-0.099  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDK--------GKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~q--------G~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -....|.++..+        |++++|++.|.+|+.+     .|.+++.+..|.+||.+|..+|++++|+
T Consensus       215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~lg~~~~~~g~~~~A~  278 (474)
T 4abn_A          215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-----DRKASSNPDLHLNRATLHKYEESYGEAL  278 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-----CGGGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-----CCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence            345569999888        9999999999999987     2324488999999999999999999999

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.58  E-value=0.002  Score=49.99  Aligned_cols=62  Identities=13%  Similarity=-0.026  Sum_probs=49.4

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT--ASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev--A~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .|..+.+  .+..|.++..+|++++|.+.|.+++.+        +|+-  ...+.+|+.++..+|+.++|+    ..+
T Consensus       104 ~P~~~~~--~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~a~~~l~~~~~~~g~~~~A~----~~y  167 (176)
T 2r5s_A          104 NPDNFEL--ACELAVQYNQVGRDEEALELLWNILKV--------NLGAQDGEVKKTFMDILSALGQGNAIA----SKY  167 (176)
T ss_dssp             STTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTTTTTHHHHHHHHHHHHHCSSCHHH----HHH
T ss_pred             CCCCHHH--HHHHHHHHHHcccHHHHHHHHHHHHHh--------CcccChHHHHHHHHHHHHHhCCCCcHH----HHH
Confidence            3444444  455699999999999999999998854        4443  457889999999999999999    555

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.58  E-value=0.0018  Score=59.70  Aligned_cols=55  Identities=15%  Similarity=0.059  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +......|.++..+|++++|.++|.+|+.+        +|+-+.++.+||.+|..+|++++|+
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~   77 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRVRWTQQRHAEAA   77 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            344666799999999999999999999974        6777889999999999999999999

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.57  E-value=0.0018  Score=56.71  Aligned_cols=65  Identities=15%  Similarity=0.079  Sum_probs=50.1

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-----CC----CChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-----GP----YHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-----G~----~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+....+.|..+..+|++++|+..|.+|+.+...-.     |.    .......+|++||.+|..+|++++|+
T Consensus       177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~  250 (338)
T 2if4_A          177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI  250 (338)
T ss_dssp             HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3677788899999999999999999999998753211     00    00001149999999999999999999

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=96.56  E-value=0.002  Score=58.11  Aligned_cols=60  Identities=8%  Similarity=0.029  Sum_probs=48.7

Q ss_pred             cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCC-hhhHh
Q 027539          123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGD-FNQVR  190 (222)
Q Consensus       123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd-~~eAi  190 (222)
                      .....+.-....|.++..+|++++|+++|.+++.+        +|+-+.+|+++|.+|..+|+ +++|+
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl  152 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEM  152 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHH
Confidence            33444555556689999999999999999999964        67778889999999999996 88888

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=96.56  E-value=0.002  Score=58.14  Aligned_cols=59  Identities=14%  Similarity=0.050  Sum_probs=47.9

Q ss_pred             ccCchhHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          122 GCTSADGRTLLESSKIALDKGK-LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~-~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +|....+  ....|.++...|+ +++|+..|.+|+.+        +|+-+.+|+++|.+|..+|++++|+
T Consensus       127 ~P~~~~a--~~~~g~~l~~~g~d~~eAl~~~~~al~l--------~P~~~~a~~~~g~~~~~~g~~~eAl  186 (382)
T 2h6f_A          127 NAANYTV--WHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQEL  186 (382)
T ss_dssp             CTTCHHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             CccCHHH--HHHHHHHHHHcccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHccCHHHHH
Confidence            4444444  4455999999997 99999999999975        6777788899999999999998888

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.52  E-value=0.0045  Score=47.43  Aligned_cols=59  Identities=19%  Similarity=0.177  Sum_probs=47.9

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HHHcCCh--hhHh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVV-LYHTGDF--NQVR  190 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~v-y~~~Gd~--~eAi  190 (222)
                      .|..+.  ..+..|.++...|++++|...|.+++.+.        |+....+..+|.+ |...|++  ++|+
T Consensus        40 ~p~~~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~l~~~~~~~~~~~A~  101 (177)
T 2e2e_A           40 NPQNSE--QWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAALATVLYYQASQHMTAQTR  101 (177)
T ss_dssp             CCSCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred             CCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence            344444  45566999999999999999999999874        3345678999999 8899998  9988

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.52  E-value=0.0021  Score=61.69  Aligned_cols=54  Identities=20%  Similarity=0.111  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ...+..|.++..+|++++|++.|.+++.+        +|+-+.++.++|.+|..+|++++|+
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~  487 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYRAVAELLTGDYDSAT  487 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHHHHHHHHcCCHHHHH
Confidence            34556699999999999999999999986        5667889999999999999999998

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.48  E-value=0.0042  Score=50.91  Aligned_cols=54  Identities=19%  Similarity=0.207  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi  190 (222)
                      ++...+..|..+..+|++++|.++|.+|+.       +.+   +.++.+||.+|..    .|++++|+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-------~~~---~~a~~~lg~~~~~g~~~~~~~~~A~   62 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-------LKE---NSGCFNLGVLYYQGQGVEKNLKKAA   62 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------CCC---HHHHHHHHHHHHcCCCcCCCHHHHH
Confidence            344556668888888888888888888876       233   3567778888888    88888887

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.0023  Score=44.62  Aligned_cols=57  Identities=9%  Similarity=0.017  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYH---RTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~H---pevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-.+..|.++...|++++|++.+.+++.+.     |.+   ...+.++..++.++..+|++++|+
T Consensus        39 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   98 (111)
T 2l6j_A           39 VGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----STAEHVAIRSKLQYRLELAQGAVGSVQIPV   98 (111)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SSTTSHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCccHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence            345667999999999999999999999752     222   113888999999999999999998

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.0082  Score=52.65  Aligned_cols=89  Identities=11%  Similarity=-0.038  Sum_probs=70.1

Q ss_pred             hhHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHHh--CCCC----hHHHHHHHHHHHHHHHcCChhhHhhchH--
Q 027539          126 ADGRTLLESSKIALD---KGKLEDAVNYGTKALARMIAVC--GPYH----RTTASTYSLLAVVLYHTGDFNQVRQSSV--  194 (222)
Q Consensus       126 ~~a~~lle~g~~~l~---qG~~e~A~~L~~eAL~i~eqV~--G~~H----pevA~~y~~LA~vy~~~Gd~~eAi~~~~--  194 (222)
                      .++...+..|...+.   .|++++|.++|.+++..++...  .|.+    |..+..+..+|.+|...|++++|+.+..  
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  263 (514)
T 2gw1_A          184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA  263 (514)
T ss_dssp             CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            457777888998887   8999999999999999988877  6666    8999999999999999999999983221  


Q ss_pred             --------------HhhhhhCCCCceEEEeeeec
Q 027539          195 --------------VFQCQLGDSKSSIIITSFCT  214 (222)
Q Consensus       195 --------------~~~~~~~~~~~a~~i~e~~~  214 (222)
                                    ..+.+.|++..|+...+++.
T Consensus       264 l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  297 (514)
T 2gw1_A          264 IELFPRVNSYIYMALIMADRNDSTEYYNYFDKAL  297 (514)
T ss_dssp             HHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred             HhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                          22345667776666555543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.007  Score=52.49  Aligned_cols=72  Identities=14%  Similarity=0.017  Sum_probs=62.6

Q ss_pred             ccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          118 CKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       118 VK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+....+...++-.++.|+++..+|++++|..++.+|+.+...+.. .|...+..+..++.++...|++.+|.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~y~~A~  236 (434)
T 4b4t_Q          165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC-PTQTVAELDLMSGILHCEDKDYKTAF  236 (434)
T ss_dssp             HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3444456677888999999999999999999999999999988754 45678999999999999999999998

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.28  E-value=0.0044  Score=56.07  Aligned_cols=58  Identities=12%  Similarity=0.012  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      +......|.++...|++++|.+++.+++.+        .|+-+.+|..||.+|..+|++++|+    .++
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~----~~~  573 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLL--------STNDANVHTAIALVYLHKKIPGLAI----THL  573 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSCCHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHH----HHH
Confidence            455666799999999999999999999987        2555688999999999999999999    666

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.11  E-value=0.0067  Score=51.76  Aligned_cols=24  Identities=13%  Similarity=0.050  Sum_probs=11.7

Q ss_pred             hHHHHHHHHHHHHHHHcCChhhHh
Q 027539          167 RTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       167 pevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      |+.+..++++|.+|..+|++++|+
T Consensus       197 p~~~~~~~~la~~~~~~g~~~eA~  220 (291)
T 3mkr_A          197 SPTLLLLNGQAACHMAQGRWEAAE  220 (291)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHH
Confidence            333444455555555555555554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.07  E-value=0.016  Score=38.70  Aligned_cols=48  Identities=19%  Similarity=0.238  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG  184 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G  184 (222)
                      .-.+..|.++...|++++|...+.+++.+        +|+....+.+||.++..+|
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           44 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcC
Confidence            34566799999999999999999999986        4555678899999998776

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.01  E-value=0.0089  Score=53.01  Aligned_cols=52  Identities=19%  Similarity=0.243  Sum_probs=32.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ....|.++...|++++|.+.|.+++.+        .|+....+..+|.+|+.+|++++|+
T Consensus       313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~  364 (537)
T 3fp2_A          313 YYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENVYPYIQLACLLYKQGKFTESE  364 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            444477777777777777777777663        2223345666666666666666665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.91  E-value=0.011  Score=50.04  Aligned_cols=59  Identities=15%  Similarity=0.044  Sum_probs=46.1

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHHHHcCChhhHh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT--ASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev--A~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|...++  .+..|..+..+|++++|++.|.+++..        +|+-  +..+.+|+.+|..+|+.++|+
T Consensus       215 ~P~~~~~--~~~la~~l~~~g~~~~A~~~l~~~l~~--------~p~~~~~~a~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          215 NPEDAAL--ATQLALQLHQVGRNEEALELLFGHLRX--------DLTAADGQTRXTFQEILAALGTGDALA  275 (287)
T ss_dssp             CTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCccHHH--HHHHHHHHHHcccHHHHHHHHHHHHhc--------ccccccchHHHHHHHHHHHcCCCCcHH
Confidence            3444444  445589999999999999999988885        4554  677888999999999999988

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=95.86  E-value=0.0047  Score=59.23  Aligned_cols=66  Identities=17%  Similarity=-0.052  Sum_probs=44.3

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--------------------------HHHhCCCChHHHHHHHH
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARM--------------------------IAVCGPYHRTTASTYSL  175 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~--------------------------eqV~G~~HpevA~~y~~  175 (222)
                      .|....+  .+..|.++..+|++++|++.|.+|+.+-                          +++. ...|+-+..|.+
T Consensus       463 ~p~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al-~~~P~~~~a~~~  539 (681)
T 2pzi_A          463 VGWRWRL--VWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVW-STNDGVISAAFG  539 (681)
T ss_dssp             HCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHH-HHCTTCHHHHHH
T ss_pred             CcchHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH-HhCCchHHHHHH
Confidence            4444444  4556999999999999999999988742                          1111 124555556777


Q ss_pred             HHHHHHHcCChhhHh
Q 027539          176 LAVVLYHTGDFNQVR  190 (222)
Q Consensus       176 LA~vy~~~Gd~~eAi  190 (222)
                      ||.+|..+|++++|+
T Consensus       540 lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          540 LARARSAEGDRVGAV  554 (681)
T ss_dssp             HHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHH
Confidence            777777777777777

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=95.68  E-value=0.02  Score=48.78  Aligned_cols=54  Identities=24%  Similarity=0.193  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-.+..|.++..+|++++|.+.|.+|+.+.     |.+|   ..+.+++.++..+|++++|.
T Consensus       201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~-----p~~~---~~l~~l~~~~~~~g~~~eaa  254 (291)
T 3mkr_A          201 LLLNGQAACHMAQGRWEAAEGVLQEALDKD-----SGHP---ETLINLVVLSQHLGKPPEVT  254 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHcCCCHHHH
Confidence            345556999999999999999999999763     4454   45899999999999998753

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.43  E-value=0.022  Score=46.54  Aligned_cols=51  Identities=16%  Similarity=0.197  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHh
Q 027539          130 TLLESSKIALD----KGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~----qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi  190 (222)
                      ..+..|.++..    +|++++|+++|.+|+.+     |     -+.++.+||.+|..    .|++++|+
T Consensus        40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~-----~~~a~~~lg~~~~~g~~~~~~~~~A~   98 (273)
T 1ouv_A           40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----N-----YSNGCHLLGNLYYSGQGVSQNTNKAL   98 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHhCCCCcccCHHHHH
Confidence            34556888888    88888888888888765     2     24567778888888    88888887

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.31  E-value=0.025  Score=45.59  Aligned_cols=61  Identities=11%  Similarity=0.016  Sum_probs=42.9

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR-TTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hp-evA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+.+..|+-|-..+.....+    .+.+++.++++++-...| +-..|+.+||..||++|+|++|.
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~----~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYND----DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            34555666688888777333    333444444444443357 67899999999999999999999

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=94.88  E-value=0.017  Score=48.85  Aligned_cols=60  Identities=12%  Similarity=-0.083  Sum_probs=46.7

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|.+..+...  .|..+..+|++++|.+.|.+++.+     .|.+++.  .+.+++.++..+|++++|+
T Consensus        95 ~p~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~--~~~~~~~~~~~~~~~~~A~  154 (308)
T 2ond_A           95 LKKNMLLYFA--YADYEESRMKYEKVHSIYNRLLAI-----EDIDPTL--VYIQYMKFARRAEGIKSGR  154 (308)
T ss_dssp             TTTCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHH--HHHHHHHHHHHHHCHHHHH
T ss_pred             CcccHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhc-----cccCccH--HHHHHHHHHHHhcCHHHHH
Confidence            3455555444  488999999999999999999974     3444432  7899999999999999997

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=94.87  E-value=0.13  Score=37.36  Aligned_cols=63  Identities=13%  Similarity=0.105  Sum_probs=49.7

Q ss_pred             cccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHH
Q 027539          119 KHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVLY  181 (222)
Q Consensus       119 K~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy~  181 (222)
                      .|-.|.|.-|.+++..|.-.-..|++++|+.+|.+|+..+.++. +.-.|..-..+..-..-|.
T Consensus         7 ~~~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl   70 (86)
T 4a5x_A            7 HHMDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYM   70 (86)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             ccCChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999876 5667776666665554443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=94.68  E-value=0.033  Score=44.80  Aligned_cols=54  Identities=26%  Similarity=0.367  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC----ChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG----DFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G----d~~eAi  190 (222)
                      .++...+..|.++..+|++++|.++|.+|+..     |  |   +.++.+||.+|.. |    ++++|+
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g--~---~~a~~~lg~~y~~-~g~~~~~~~A~   73 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----G--D---GDALALLAQLKIR-NPQQADYPQAR   73 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T--C---HHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----C--C---HHHHHHHHHHHHc-CCCCCCHHHHH
Confidence            44556667799999999999999999998762     2  3   4567788888887 6    788888

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.86  E-value=0.19  Score=37.87  Aligned_cols=57  Identities=18%  Similarity=0.082  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHhhchHHhh
Q 027539          127 DGRTLLESSKIALD----KGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVRQSSVVFQ  197 (222)
Q Consensus       127 ~a~~lle~g~~~l~----qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi~~~~~~~  197 (222)
                      ++.-.+..|.++..    ++++++|.++|.+|...     |  |   +.++.+||.+|..    .+|+++|+    .++
T Consensus        56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----g--~---~~a~~~Lg~~y~~G~g~~~d~~~A~----~~~  120 (138)
T 1klx_A           56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----N--D---QDGCLILGYKQYAGKGVVKNEKQAV----KTF  120 (138)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----T--C---HHHHHHHHHHHHHTSSSCCCHHHHH----HHH
T ss_pred             CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----C--C---HHHHHHHHHHHHCCCCCCcCHHHHH----HHH
Confidence            34455666999998    88999999999999753     2  2   5678899999999    99999999    666

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=93.83  E-value=0.12  Score=43.57  Aligned_cols=67  Identities=12%  Similarity=0.033  Sum_probs=46.5

Q ss_pred             ccCchhHHHHHHHHHHHH-------hcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          122 GCTSADGRTLLESSKIAL-------DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l-------~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|.++++...  .|..+.       .+|+.+.+...+.+|+.++++..-.++|+-+..+..+|.++..+|++++|.
T Consensus        46 ~p~~~~~w~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~  119 (308)
T 2ond_A           46 LGHHPDIWYE--AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH  119 (308)
T ss_dssp             HTTCHHHHHH--HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCCHHHHHH--HHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence            3455544433  355554       468875455555566666666655557888889999999999999999998

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=93.59  E-value=0.026  Score=40.22  Aligned_cols=37  Identities=11%  Similarity=-0.054  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          146 DAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       146 ~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +|++.|.+++.        ..|+-+..+.+||.+|..+|++++|+
T Consensus         3 ~a~~~~~~al~--------~~p~~~~~~~~lg~~~~~~g~~~~A~   39 (115)
T 2kat_A            3 AITERLEAMLA--------QGTDNMLLRFTLGKTYAEHEQFDAAL   39 (115)
T ss_dssp             CHHHHHHHHHT--------TTCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHH--------hCCCcHHHHHHHHHHHHHccCHHHHH
Confidence            45666666664        45666789999999999999999998

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.92  E-value=0.36  Score=39.44  Aligned_cols=64  Identities=8%  Similarity=0.015  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR-TTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hp-evA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .+++..+..++.|.|+.|..+..-++++.++=-...-| .-+..+..+|..+|..|.|.+|.    .++
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~----~~y   86 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAV----SKY   86 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHH----HHH
Confidence            47889999999999999999999999997662222233 34778999999999999999999    666

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=92.72  E-value=0.18  Score=44.08  Aligned_cols=54  Identities=15%  Similarity=0.014  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRT-TASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpe-vA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+..|.++...|++++|+..|.+++      -|+.-|. ......++|.++.++|+.++|.
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~------~g~~~P~~~~da~~~~glaL~~lGr~deA~  228 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEAN------DSPAGEACARAIAWYLAMARRSQGNESAAV  228 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH------TSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHh------cCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence            4445999999999999999988876      3664476 7778899999999999999999

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=92.58  E-value=0.13  Score=41.24  Aligned_cols=60  Identities=8%  Similarity=0.091  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHhhchHHhh
Q 027539          128 GRTLLESSKIALD----KGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVRQSSVVFQ  197 (222)
Q Consensus       128 a~~lle~g~~~l~----qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi~~~~~~~  197 (222)
                      +...+..|.++..    .+++++|+++|.+|+..     |+ ..+.+.++.+||.+|..    .+++++|+    .++
T Consensus        85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~----~~~  152 (212)
T 3rjv_A           85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SE-SDAAVDAQMLLGLIYASGVHGPEDDVKAS----EYF  152 (212)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TT-SHHHHHHHHHHHHHHHHTSSSSCCHHHHH----HHH
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CC-CcchHHHHHHHHHHHHcCCCCCCCHHHHH----HHH
Confidence            3345556888887    78888888888888753     11 11568889999999999    88999999    665

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=91.34  E-value=0.43  Score=41.69  Aligned_cols=59  Identities=10%  Similarity=0.031  Sum_probs=38.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHH--------------------------HHHHHHHhCCCChHH-HHHHHHHHHHHHHcC
Q 027539          132 LESSKIALDKGKLEDAVNYGTKA--------------------------LARMIAVCGPYHRTT-ASTYSLLAVVLYHTG  184 (222)
Q Consensus       132 le~g~~~l~qG~~e~A~~L~~eA--------------------------L~i~eqV~G~~Hpev-A~~y~~LA~vy~~~G  184 (222)
                      ++-|..+.++|++++|.++|.+.                          +..+++....-+|.. +..+.+|+.++..+|
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG  185 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA  185 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence            34467777777777777777533                          333333333335654 457778888888888


Q ss_pred             ChhhHh
Q 027539          185 DFNQVR  190 (222)
Q Consensus       185 d~~eAi  190 (222)
                      ++++|+
T Consensus       186 ~~~eAl  191 (282)
T 4f3v_A          186 LFTEAE  191 (282)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            888887

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.24  E-value=0.26  Score=38.96  Aligned_cols=87  Identities=8%  Similarity=0.105  Sum_probs=53.3

Q ss_pred             CCCCCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHH
Q 027539          101 DCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR-TTASTYSLLAVV  179 (222)
Q Consensus       101 ~~~~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hp-evA~~y~~LA~v  179 (222)
                      |...|++++|+..+-=.+-...--.+....-|+-|-..+.....+    -..+++.+++.++. .+| ..-.|+..||.-
T Consensus        13 ~~~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~----d~~~GI~LLe~l~~-~~~~~~Rd~LYyLAvg   87 (134)
T 3o48_A           13 DAYEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVN----DERLGVKILTDIYK-EAESRRRECLYYLTIG   87 (134)
T ss_dssp             GGGCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHH-HCGGGHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHH----HHHHHHHHHHHHHh-cCcchhHHHHHHHHHH
Confidence            344567777765444333221112334455666676666665433    23345555555553 246 578999999999


Q ss_pred             HHHcCChhhHhhc
Q 027539          180 LYHTGDFNQVRQS  192 (222)
Q Consensus       180 y~~~Gd~~eAi~~  192 (222)
                      +|++|+|++|..+
T Consensus        88 ~yklgdY~~Ar~y  100 (134)
T 3o48_A           88 CYKLGEYSMAKRY  100 (134)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHhhhHHHHHHH
Confidence            9999999999933

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=90.92  E-value=0.3  Score=44.56  Aligned_cols=60  Identities=17%  Similarity=0.017  Sum_probs=48.3

Q ss_pred             cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      |..+.+...+  |-.++.+|++++|...+++|+.+-        |+ +..|..+|.++...|++++|+    +.+
T Consensus       274 ~~~a~~~~al--al~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA~----e~~  333 (372)
T 3ly7_A          274 NNLSIIYQIK--AVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREAA----DAY  333 (372)
T ss_dssp             TTCHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred             CcCHHHHHHH--HHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHHH----HHH
Confidence            4444454444  667777899999999999999983        33 568899999999999999999    666

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=90.78  E-value=0.36  Score=43.20  Aligned_cols=51  Identities=20%  Similarity=0.227  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHh
Q 027539          130 TLLESSKIALD----KGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~----qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi  190 (222)
                      -.+..|.++..    ++++++|.++|.+|+..     |  +   +.++.+||.+|+.    .||+++|+
T Consensus       365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~--~---~~a~~~Lg~~y~~g~g~~~d~~~A~  423 (490)
T 2xm6_A          365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-----G--L---SAAQVQLGEIYYYGLGVERDYVQAW  423 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T--C---HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-----C--C---HHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            34445666666    66777777777776652     2  2   4467777777777    77777777

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=90.67  E-value=0.38  Score=43.52  Aligned_cols=58  Identities=14%  Similarity=0.121  Sum_probs=45.6

Q ss_pred             HHHHHHHh-------cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          133 ESSKIALD-------KGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       133 e~g~~~l~-------qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..|..+..       +|+++.|..+..+|+.++++......|+-...+..+|.++..+|++++|.
T Consensus       277 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~  341 (530)
T 2ooe_A          277 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH  341 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence            34666654       79988666666677777777775557888889999999999999999998

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=90.39  E-value=0.58  Score=38.22  Aligned_cols=79  Identities=13%  Similarity=0.018  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC-----------------ChHHHHHHHHHHHHHHHcCChhhH
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPY-----------------HRTTASTYSLLAVVLYHTGDFNQV  189 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~-----------------HpevA~~y~~LA~vy~~~Gd~~eA  189 (222)
                      .++.++--|..+..+|+|..|...|.+||.+..-+.-.-                 -+.-+.+-..+|..|.++|++.+|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            455677779999999999999999999999888432110                 112235667799999999999999


Q ss_pred             hhchHHhhhhhCCCCceEEEeeeechh
Q 027539          190 RQSSVVFQCQLGDSKSSIIITSFCTEV  216 (222)
Q Consensus       190 i~~~~~~~~~~~~~~~a~~i~e~~~~~  216 (222)
                      +   .+++        ++-..+|+..|
T Consensus       142 i---~~Le--------~Ip~k~Rt~kv  157 (167)
T 3ffl_A          142 I---AILD--------GIPSRQRTPKI  157 (167)
T ss_dssp             H---HHHH--------TSCGGGCCHHH
T ss_pred             H---HHHh--------cCCchhcCHHH
Confidence            9   2233        55556666544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.23  E-value=0.28  Score=39.16  Aligned_cols=62  Identities=6%  Similarity=0.080  Sum_probs=41.5

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHcCChhhHhhc
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR-TTASTYSLLAVVLYHTGDFNQVRQS  192 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hp-evA~~y~~LA~vy~~~Gd~~eAi~~  192 (222)
                      +..+.-|+-|-..+.....+    -..+++.++++++- .+| .--.|+..||.-||++|+|++|..|
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~----di~~GI~LLe~l~~-~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y   99 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVN----DERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRY   99 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHH----HHHHHHHHHHHHHH-HCCSTHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHhhhHHHHHHH
Confidence            44555666676666665433    22344555555553 244 5778999999999999999999933

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=89.78  E-value=0.43  Score=43.17  Aligned_cols=60  Identities=10%  Similarity=-0.098  Sum_probs=46.8

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|.+..+...  .|......|++++|.++|.+++.+     .|.+|  +..+.+++.++..+|++++|.
T Consensus       317 ~p~~~~l~~~--~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~  376 (530)
T 2ooe_A          317 LKKNMLLYFA--YADYEESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGR  376 (530)
T ss_dssp             CSSCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHH--HHHHHHhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHH
Confidence            4555555444  488888999999999999999975     34443  358999999999999999987

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=89.71  E-value=0.79  Score=40.95  Aligned_cols=55  Identities=16%  Similarity=0.244  Sum_probs=39.6

Q ss_pred             hhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHh
Q 027539          126 ADGRTLLESSKIALD----KGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~----qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi  190 (222)
                      .+++..+..|..+..    ++++++|+++|.+|+..     |  |   +.++..||.+|..    .+++++|+
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~--~---~~a~~~Lg~~y~~g~g~~~~~~~A~   99 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----G--Y---TPAEYVLGLRYMNGEGVPQDYAQAV   99 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T--C---HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----C--C---HHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            345556666888887    78888888888888652     2  2   3567778888887    78888877

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=89.38  E-value=1.9  Score=33.43  Aligned_cols=59  Identities=12%  Similarity=0.028  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHcCChhhHhh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR-TTASTYSLLAVVLYHTGDFNQVRQ  191 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hp-evA~~y~~LA~vy~~~Gd~~eAi~  191 (222)
                      +.-|+-|-..+.....+    -..+++.+++.++...+| .--.|+..||.-+|++|+|++|..
T Consensus        36 ~~~F~yAw~Lv~S~~~~----d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYND----DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHTTSSSHH----HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHH----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            33444466666555444    345677777888876557 788999999999999999999993

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.16  E-value=0.29  Score=45.95  Aligned_cols=71  Identities=18%  Similarity=0.076  Sum_probs=40.9

Q ss_pred             HHH-HHHHHHHhcCChHHHHHHHHHH-----HHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCC
Q 027539          130 TLL-ESSKIALDKGKLEDAVNYGTKA-----LARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDS  203 (222)
Q Consensus       130 ~ll-e~g~~~l~qG~~e~A~~L~~eA-----L~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~  203 (222)
                      ..| +.|+.++++|+++.|...|.++     +.......|  .+   ..+..++.+.-..|++..|.    .++-++||+
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~--~~---~~~~~~~~~a~~~~~~~~A~----~~~~~~g~~  752 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN--NK---EGLVTLAKDAETTGKFNLAF----NAYWIAGDI  752 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT--CH---HHHHHHHHHHHHTTCHHHHH----HHHHHHTCH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcC--CH---HHHHHHHHHHHHcCchHHHH----HHHHHcCCH
Confidence            344 4589999999999999999885     334444444  22   22334444444455555554    444444444


Q ss_pred             CceEEE
Q 027539          204 KSSIII  209 (222)
Q Consensus       204 ~~a~~i  209 (222)
                      +.|+.+
T Consensus       753 ~~a~~~  758 (814)
T 3mkq_A          753 QGAKDL  758 (814)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=88.94  E-value=0.45  Score=32.33  Aligned_cols=35  Identities=14%  Similarity=0.083  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT  169 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev  169 (222)
                      -.+..|.++..+|++++|.+.|.+++.+     .|.++++
T Consensus        37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~   71 (99)
T 2kc7_A           37 AYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPAL   71 (99)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHH
Confidence            4566799999999999999999999976     4555554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=88.42  E-value=0.49  Score=35.52  Aligned_cols=50  Identities=12%  Similarity=0.113  Sum_probs=41.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHhhchHHhh
Q 027539          134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVRQSSVVFQ  197 (222)
Q Consensus       134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi~~~~~~~  197 (222)
                      .|..+...+..++|.++|.+|...     |     .+.++.+||.+|..    .+|+++|+    .++
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~-----g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~----~~~   84 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL-----N-----SGNGCRFLGDFYENGKYVKKDLRKAA----QYY   84 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHCSSSCCCHHHHH----HHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC-----C-----CHHHHHHHHHHHHcCCCCCccHHHHH----HHH
Confidence            488888877888899999988764     2     35788899999999    89999999    665

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=87.44  E-value=0.22  Score=46.53  Aligned_cols=48  Identities=17%  Similarity=0.177  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .....|..+..+|++++|..+|.++                .-|..||.+++++|++++|+    +.+
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AV----ea~  171 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAV----DGA  171 (449)
T ss_dssp             -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHH----HHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHH----HHH
Confidence            5666799999999999999999977                58899999999999999999    555

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=86.88  E-value=0.21  Score=35.07  Aligned_cols=25  Identities=12%  Similarity=-0.048  Sum_probs=21.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          166 HRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       166 HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|+-+..+..||.+|+.+|++++|+
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~   27 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRAL   27 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHH
Confidence            4667788999999999999999999

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=86.83  E-value=1.4  Score=31.66  Aligned_cols=37  Identities=19%  Similarity=0.181  Sum_probs=32.1

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC  162 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~  162 (222)
                      ..|-+++..|-..-..|++++|+.+|.+|+..+.+..
T Consensus        17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~al   53 (83)
T 2w2u_A           17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLV   53 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            4566778888888899999999999999999998864

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=85.89  E-value=1.6  Score=31.09  Aligned_cols=37  Identities=27%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC  162 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~  162 (222)
                      ..|-+++..|-..-..|++++|+.+|.+|+..+.+..
T Consensus         9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~l   45 (83)
T 2v6y_A            9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQII   45 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            3577888888888999999999999999999999864

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=85.50  E-value=1.6  Score=39.73  Aligned_cols=71  Identities=14%  Similarity=0.031  Sum_probs=54.2

Q ss_pred             ccccCchhHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHH----------------HHHHhC-----------------
Q 027539          120 HVGCTSADGRTLLESSKIALDKGK---LEDAVNYGTKALAR----------------MIAVCG-----------------  163 (222)
Q Consensus       120 ~~~p~s~~a~~lle~g~~~l~qG~---~e~A~~L~~eAL~i----------------~eqV~G-----------------  163 (222)
                      ...|.+.+|.+++=.|+.++.++.   +.+|.+||.+|+.+                ....+|                 
T Consensus       188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~  267 (372)
T 3ly7_A          188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI  267 (372)
T ss_dssp             HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence            457889999999999999998764   57899999999862                122233                 


Q ss_pred             ---CCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          164 ---PYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       164 ---~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                         +.-|.-+.+|..+|.++...|++++|+
T Consensus       268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~  297 (372)
T 3ly7_A          268 VTLPELNNLSIIYQIKAVSALVKGKTDESY  297 (372)
T ss_dssp             HTCGGGTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HhcccCCcCHHHHHHHHHHHHhCCCHHHHH
Confidence               233555667777888888889999999

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=84.40  E-value=5.2  Score=28.26  Aligned_cols=43  Identities=21%  Similarity=0.201  Sum_probs=32.9

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 027539          125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLA  177 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA  177 (222)
                      ..+....  .|.++..+|++++|+.++++|+.+     .|.|+.+   .++++
T Consensus        45 ~~~i~~~--L~~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~---~~n~~   87 (104)
T 2v5f_A           45 KVSVLDY--LSYAVYQQGDLDKALLLTKKLLEL-----DPEHQRA---NGNLK   87 (104)
T ss_dssp             HHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHH
T ss_pred             HHHHHHH--HHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHH---HhhHH
Confidence            3444444  499999999999999999999874     6888776   44554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=84.17  E-value=1.4  Score=46.91  Aligned_cols=49  Identities=16%  Similarity=0.169  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .+....|..+.++|++++|..+|..|                .-|..||.+|.++|++++|+    +.+
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AI----Eaa 1244 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAV----DGA 1244 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHH----HHH
Confidence            45566799999999999999999884                58999999999999999999    777

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=83.87  E-value=6.3  Score=29.93  Aligned_cols=56  Identities=11%  Similarity=0.058  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CC-CChHHHHHHHHHHHHHH
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GP-YHRTTASTYSLLAVVLY  181 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~-~HpevA~~y~~LA~vy~  181 (222)
                      ..|.+++..|.-.-..|++++|+.+|.+|+.++.++. .. ..+..-..+..-..-|.
T Consensus        16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl   73 (117)
T 2cpt_A           16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYL   73 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            4667778888778889999999999999999999886 33 56776777777666664

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=83.16  E-value=2.6  Score=29.90  Aligned_cols=56  Identities=9%  Similarity=-0.031  Sum_probs=43.2

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHH
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVLY  181 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy~  181 (222)
                      ..|..++..|.-.-..|++++|+.+|.+|+..+.++. ..-.|..-..+..-..-|.
T Consensus        11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl   67 (85)
T 2v6x_A           11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYL   67 (85)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            4677888888888889999999999999999998875 3445666666665555554

>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1

Probab=82.48  E-value=2.8  Score=33.19  Aligned_cols=46  Identities=7%  Similarity=-0.143  Sum_probs=40.7

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTY  173 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y  173 (222)
                      ..|.+++..|..+..+|+.+.|+-+|.+-+++++  .=|-|||.-..-
T Consensus        40 rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~--kIpkHpdyk~~~   85 (144)
T 2a9u_A           40 HSALKIFKTAEECRLDRDEERAYVLYMKYVTVYN--LIKKRPDFKQQQ   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTTSHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HHhcCcchhhhh
Confidence            5678999999999999999999999999999995  448999987644

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=82.15  E-value=2.8  Score=30.47  Aligned_cols=55  Identities=7%  Similarity=0.056  Sum_probs=42.3

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHH
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVL  180 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy  180 (222)
                      ..|-+++..|...-..|++++|+.+|.+|+..+.++. ..-.|..-..+..-..-|
T Consensus        13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eY   68 (93)
T 1wfd_A           13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGY   68 (93)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4677888888888999999999999999999999876 445566655555444444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=80.92  E-value=2  Score=38.56  Aligned_cols=52  Identities=17%  Similarity=0.270  Sum_probs=36.1

Q ss_pred             HHHHHHHHHH-H--HhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC-----ChhhHh
Q 027539          128 GRTLLESSKI-A--LDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG-----DFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~-~--l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G-----d~~eAi  190 (222)
                      +.-.+..|.+ +  ..+|++++|+++|.+|...     |     -+.++.+||.+|. .|     |+++|+
T Consensus       248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-----g-----~~~A~~~Lg~~y~-~G~g~~~d~~~A~  307 (452)
T 3e4b_A          248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-----D-----QPRAELLLGKLYY-EGKWVPADAKAAE  307 (452)
T ss_dssp             THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence            3334455777 4  4678899999998888742     2     3456778888877 56     888887

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=80.84  E-value=1.2  Score=47.56  Aligned_cols=46  Identities=22%  Similarity=0.350  Sum_probs=34.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..-|+++.++|++++|++.|.+|             +-...|..+|..+.++|++++|+
T Consensus      1109 sqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A         1109 SQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHH
Confidence            34577788888888777777665             44566777888888888888888

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=80.81  E-value=0.26  Score=39.61  Aligned_cols=38  Identities=13%  Similarity=0.094  Sum_probs=29.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChh
Q 027539          142 GKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFN  187 (222)
Q Consensus       142 G~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~  187 (222)
                      +++++|.+.+.+|+.+        .|+-+..|.+++.++..+|+++
T Consensus        16 ~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~   53 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFH   53 (158)
T ss_dssp             HHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccc
Confidence            3466677776666654        6777889999999999998865

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=80.51  E-value=2.6  Score=41.76  Aligned_cols=57  Identities=12%  Similarity=0.121  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhch
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSS  193 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~  193 (222)
                      .=+..+++-++++|+++.|+++-.+|...        =|+--.|...||.+|-.+|||+.|+--.
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtL  394 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAI  394 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence            35667788899999999999999999875        3677789999999999999999999433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=80.11  E-value=2.2  Score=37.69  Aligned_cols=66  Identities=9%  Similarity=0.002  Sum_probs=49.2

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .+..+.  +-.|+++..+|++++|+..+.+.+.     .|+ .++...++..++.+|..+|+.+.|......++
T Consensus        98 ~~~~~~--~~la~i~~~~g~~eeAL~~l~~~i~-----~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           98 NSPYEL--YLLATAQAILGDLDKSLETCVEGID-----NDE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHT-----SSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCcHHH--HHHHHHHHHcCCHHHHHHHHHHHhc-----cCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344443  4569999999999988877776532     233 36889999999999999999999995444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.76
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.54
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.46
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.43
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.2
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.2
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.13
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.04
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.02
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.95
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.94
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.89
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.87
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.83
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.75
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.72
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.7
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.7
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.64
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.62
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.56
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.56
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.54
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.53
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.52
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.51
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.49
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.49
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.44
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.35
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.34
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.26
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.06
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.04
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	96.08
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	95.85
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.79
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.5
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.45
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	94.94
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	94.72
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	92.01
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	91.77
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	91.69
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	91.35
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	90.76
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	88.23
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	87.23
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	86.75
d2a9ua1	134	Ubiquitin carboxyl-terminal hydrolase 8, USH8 {Hum	85.85
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	85.5

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=5.5e-09  Score=74.96  Aligned_cols=73  Identities=15%  Similarity=0.211  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS  206 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a  206 (222)
                      .|++.++.|+++.++|++++|.+.|.+|+.+... .+..+++.+.+|.+||.+|+.+|++++|+    .++      ++|
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~-~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~----~~y------~~a   72 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDE-GEISTIDKVSVLDYLSYAVYQQGDLDKAL----LLT------KKL   72 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-TCCCSSCHHHHHHHHHHHHHHTTCHHHHH----HHH------HHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh-hhccCccHHHHHHHHhhHHHhcCChHHHH----HHH------HHH
Confidence            4677899999999999999999999999998865 45567788999999999999999999999    777      677


Q ss_pred             EEEe
Q 027539          207 IIIT  210 (222)
Q Consensus       207 ~~i~  210 (222)
                      +.+.
T Consensus        73 L~l~   76 (95)
T d1tjca_          73 LELD   76 (95)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            7653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=3.4e-08  Score=76.43  Aligned_cols=58  Identities=19%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      |+.|.++-+.|..+..+|++++|++.|.+|+.+        .|..+.+|+++|.+|..+|++++|+
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai   58 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQAL   58 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhh
Confidence            678999999999999999999999999999987        5777889999999999999999999

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.46  E-value=4.5e-08  Score=75.23  Aligned_cols=66  Identities=15%  Similarity=0.056  Sum_probs=59.4

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG----PYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G----~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .++|+.++..|..++.+|++++|++.|++|+.+..+...    ..++..|.||+++|.+|..+|++++|+
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~   75 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL   75 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhh
Confidence            467889999999999999999999999999999988643    235678999999999999999999999

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.43  E-value=1.1e-07  Score=69.48  Aligned_cols=84  Identities=11%  Similarity=0.106  Sum_probs=66.5

Q ss_pred             ccccCCCCCCCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 027539           95 PRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYS  174 (222)
Q Consensus        95 ~rdY~f~~~~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~  174 (222)
                      +.+|.|+.++|+..-+.                   .++.|..+.++|++++|...|++++.+        +|+-+.+|.
T Consensus         2 ~~~y~f~~~n~~~~~~~-------------------~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~   54 (112)
T d1hxia_           2 NTDYPFEANNPYMYHEN-------------------PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWR   54 (112)
T ss_dssp             CCCCCCCSSCGGGGCSC-------------------HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHH
T ss_pred             chhccCCCCCCcccHHH-------------------HHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhh
Confidence            45899999888753332                   477899999999999999999999975        466678999


Q ss_pred             HHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEeeeech
Q 027539          175 LLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTE  215 (222)
Q Consensus       175 ~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~e~~~~  215 (222)
                      .||.+|..+|++++|+    .++      ++|+.+.....+
T Consensus        55 ~lg~~~~~~~~~~~A~----~~~------~~al~~~p~~~~   85 (112)
T d1hxia_          55 SLGLTQAENEKDGLAI----IAL------NHARMLDPKDIA   85 (112)
T ss_dssp             HHHHHHHHTTCHHHHH----HHH------HHHHHHCTTCHH
T ss_pred             hhhhhhhhhhhHHHhh----ccc------cccccccccccc
Confidence            9999999999999999    666      566665544333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.8e-07  Score=65.90  Aligned_cols=55  Identities=22%  Similarity=0.294  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.++.+.|..++.+|++++|+++|.+++.+        .|+-+.+|.++|.+|..+|++++|+
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~   57 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAY   57 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccc
Confidence            578899999999999999999999999975        5777789999999999999999999

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=6.2e-07  Score=66.74  Aligned_cols=56  Identities=23%  Similarity=0.235  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|...-+.|..+..+|++++|++.|++|+.+        +|+.+.+|.++|.+|+.+|++++|+
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~   58 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCR   58 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHH
Confidence            3566678899999999999999999999986        6777889999999999999999999

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.20  E-value=6.4e-07  Score=68.50  Aligned_cols=79  Identities=13%  Similarity=-0.062  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCC
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAV---CGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDS  203 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV---~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~  203 (222)
                      .+.-..+.|.++...|++++|.+.+.+|+.++.+.   .+..+|..+.+|+++|.+|..+|++++|+    .++      
T Consensus        54 ~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~----~~~------  123 (156)
T d2hr2a1          54 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAM----PEF------  123 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH----HHH------
T ss_pred             HHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHH----HHH------
Confidence            44555677999999999999999999999999875   45667888999999999999999999999    766      


Q ss_pred             CceEEEeeeech
Q 027539          204 KSSIIITSFCTE  215 (222)
Q Consensus       204 ~~a~~i~e~~~~  215 (222)
                      ++|+.|.+...+
T Consensus       124 ~~Al~l~~~~~~  135 (156)
T d2hr2a1         124 KKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHHHCCS
T ss_pred             HHHHHhhHHhhc
Confidence            688877665544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.2e-06  Score=66.70  Aligned_cols=56  Identities=13%  Similarity=0.162  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -|+.+.+.|..++.+|++++|++.|++|+.+        +|+-+.+|.++|.+|..+|++++|+
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~   64 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYAL   64 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHH
Confidence            4688999999999999999999999999985        7888999999999999999999998

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.04  E-value=2.4e-06  Score=66.04  Aligned_cols=64  Identities=14%  Similarity=0.150  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG-------PYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G-------~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|..+-+.|..+..+|++++|+..|.+|+.+++.-++       ..++..+.+|+++|.+|+.+|++++|+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai   84 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV   84 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccch
Confidence            4678889999999999999999999999998765444       345567899999999999999999999

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.02  E-value=2.6e-06  Score=65.10  Aligned_cols=65  Identities=15%  Similarity=0.081  Sum_probs=55.5

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh--------HHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR--------TTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hp--------evA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..|..+-+.|..+..+|++++|+..|.+|+.++.........        ..+.+|+|+|.+|+++|++++|+
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al   87 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI   87 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhh
Confidence            467788899999999999999999999999987655544333        34679999999999999999999

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2e-06  Score=66.95  Aligned_cols=64  Identities=13%  Similarity=0.072  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHHHcCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYH-------RTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~H-------pevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -|..+.+.|..+..+|++++|++.|.+|+.++....+..+       +-.+.+|+++|.+|.++|++++|+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~   82 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI   82 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccccc
Confidence            3677889999999999999999999999998776555443       445788999999999999999999

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=2.4e-06  Score=65.52  Aligned_cols=58  Identities=14%  Similarity=0.032  Sum_probs=50.2

Q ss_pred             cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      |..+.+..  ..|.++...|++++|+..|.+|+.+        .|+-+.+|.+||.+|..+|++++|+
T Consensus        35 p~~~~~~~--~lg~~y~~~~~~~~Ai~~~~~al~l--------~p~~~~a~~~lg~~~~~l~~~~~A~   92 (201)
T d2c2la1          35 PLVAVYYT--NRALCYLKMQQPEQALADCRRALEL--------DGQSVKAHFFLGQCQLEMESYDEAI   92 (201)
T ss_dssp             SCCHHHHH--HHHHHHHHTTCHHHHHHHHHHHTTS--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHH--hHHHHHhhhhhhhhhhHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence            44455544  4599999999999999999999864        6888889999999999999999999

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=4.9e-06  Score=65.95  Aligned_cols=57  Identities=21%  Similarity=0.221  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..++-.+..|.++..+|++++|++.|.+|+.+        +|+-+.+|++||.+|..+|++++|+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchHHHHHHHHHHhh
Confidence            46777889999999999999999999999987        4556678999999999999999999

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.87  E-value=1.1e-05  Score=66.86  Aligned_cols=61  Identities=13%  Similarity=-0.020  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ++....+|..+-.+|++++|.+.|.+|+.++.+.  ..+++.+.+|.++|.+|..+|++++|+
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~   97 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            4456677899999999999999999999999874  567999999999999999999999999

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.83  E-value=1.5e-05  Score=61.13  Aligned_cols=65  Identities=12%  Similarity=0.024  Sum_probs=56.6

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG--------PYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G--------~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+..+-+.|..+..+|++++|++.|.+|+.+.....+        .++|..+.+|+++|.+|.++|++++|+
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai   97 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV   97 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhh
Confidence            44566778899999999999999999999998765443        357899999999999999999999999

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=3.9e-05  Score=56.53  Aligned_cols=64  Identities=13%  Similarity=0.185  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .-+...|.++...|++++|++.+.+|+.+..+ ....|+..+.+|..+|.++..+|++++|+    .++
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~-~~~~~~~~a~~~~~lg~~~~~~~~~~~A~----~~~  102 (128)
T d1elra_          39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAYARIGNSYFKEEKYKDAI----HFY  102 (128)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred             HHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHHHHHHhCCHHHHH----HHH
Confidence            34556699999999999999999999998766 45668899999999999999999999999    666

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2e-05  Score=62.24  Aligned_cols=54  Identities=15%  Similarity=0.188  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +-.++.|.++...|++++|++.|++|+.+        -|+-+.+|.++|.+|+++|++++|+
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINR--------DKHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhhhhhhHHHHHHHHHhhccHHHHH
Confidence            44678899999999999999999999975        4677889999999999999999998

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.9e-05  Score=64.42  Aligned_cols=52  Identities=15%  Similarity=0.077  Sum_probs=43.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .++.|..++.+|++++|+..|.+++.        .+|+-+.+|..||.+|..+|++++|+
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~--------~~P~~~~a~~~lg~~~~~~~~~~~A~   73 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQ--------QDPKHMEAWQYLGTTQAENEQELLAI   73 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--------SCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCChHHHH
Confidence            46788888899999988888888885        35666778888888888888888888

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.70  E-value=1.7e-05  Score=57.33  Aligned_cols=59  Identities=12%  Similarity=-0.071  Sum_probs=51.1

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|..+.+..  ..|.++...|++++|+..|.+|+.+        +|+-+.++..||.+|..+|++++|+
T Consensus        46 ~p~~~~a~~--~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~la~~y~~~g~~~~A~  104 (112)
T d1hxia_          46 EPEREEAWR--SLGLTQAENEKDGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNANAAL  104 (112)
T ss_dssp             STTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhh--hhhhhhhhhhhHHHhhccccccccc--------ccccccchHHHHHHHHHCCCHHHHH
Confidence            344455544  4599999999999999999999987        6788889999999999999999999

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=2.3e-05  Score=62.31  Aligned_cols=74  Identities=8%  Similarity=0.020  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS  206 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a  206 (222)
                      ........|.++...|++++|.+++.+++.+.+..  ..+|+.+.++..+|.+|..+|++++|+    .+.      ++|
T Consensus       250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~----~~l------~~A  317 (366)
T d1hz4a_         250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQ----RVL------LDA  317 (366)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHH----HHH------HHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHHH----HHH------HHH
Confidence            34445567999999999999999999999998874  689999999999999999999999999    666      577


Q ss_pred             EEEeee
Q 027539          207 IIITSF  212 (222)
Q Consensus       207 ~~i~e~  212 (222)
                      +.+.++
T Consensus       318 l~l~~~  323 (366)
T d1hz4a_         318 LKLANR  323 (366)
T ss_dssp             HHHHHH
T ss_pred             HHHhhh
Confidence            776654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.1e-05  Score=57.17  Aligned_cols=62  Identities=18%  Similarity=0.076  Sum_probs=51.3

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .|..+.+...  .|.++..+|++++|++.+.+++.+.        |+-..+|.++|.+|..+|++++|+    .++
T Consensus        33 ~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~g~~~~~~~~~~~A~----~~~   94 (117)
T d1elwa_          33 DPHNHVLYSN--RSAAYAKKGDYQKAYEDGCKTVDLK--------PDWGKGYSRKAAALEFLNRFEEAK----RTY   94 (117)
T ss_dssp             CTTCHHHHHH--HHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred             CCcchhhhhc--ccccccccccccccchhhhhHHHhc--------cchhhHHHHHHHHHHHccCHHHHH----HHH
Confidence            4555555444  5999999999999999999999763        555568999999999999999999    655

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=3.3e-05  Score=58.38  Aligned_cols=59  Identities=17%  Similarity=0.015  Sum_probs=50.8

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .|..+.+.  ...|.+++..|++++|++.|.+|+.+        .|+-+.+|.++|.+|..+|++++|+
T Consensus        40 ~p~~~~~~--~~lg~~~~~~~~~~~A~~~~~kal~~--------~p~~~~a~~~~g~~~~~~g~~~eA~   98 (159)
T d1a17a_          40 NPSNAIYY--GNRSLAYLRTECYGYALGDATRAIEL--------DKKYIKGYYRRAASNMALGKFRAAL   98 (159)
T ss_dssp             STTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             chhhhhhh--hhhHHHHHhccccchHHHHHHHHHHH--------cccchHHHHHHHHHHHHcCCHHHHH
Confidence            45555554  44599999999999999999999987        4777788999999999999999999

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=3.3e-05  Score=62.98  Aligned_cols=65  Identities=11%  Similarity=0.006  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEE
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSII  208 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~  208 (222)
                      .-.+..|.++..+|++++|.+.|.+++.+        .|+-+.++.+||.+|..+|++++|+    .++      ++|+.
T Consensus       207 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~----~~~------~~al~  268 (323)
T d1fcha_         207 LLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAV----EHF------LEALN  268 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH----HHH------HHHHH
T ss_pred             cchhhhhhcccccccchhHHHHHHHHHHH--------hhccHHHHHHHHHHHHHCCCHHHHH----HHH------HHHHH
Confidence            33455688888999999999999888875        3455667889999999999999998    666      56665


Q ss_pred             Eee
Q 027539          209 ITS  211 (222)
Q Consensus       209 i~e  211 (222)
                      +..
T Consensus       269 l~p  271 (323)
T d1fcha_         269 MQR  271 (323)
T ss_dssp             HHH
T ss_pred             hCC
Confidence            533

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.56  E-value=3.6e-05  Score=58.46  Aligned_cols=54  Identities=13%  Similarity=0.110  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .-..+.|.++...|++++|++.+.+||.+        +|+-..+|..+|.+|+.+|++++|+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~--------~p~~~ka~~~~g~~~~~lg~~~~A~  121 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAK  121 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccc--------cchhhhhhHHhHHHHHHcCCHHHHH
Confidence            34456899999999999999999999965        7777899999999999999999999

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.54  E-value=3.1e-05  Score=59.28  Aligned_cols=65  Identities=15%  Similarity=0.040  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS  206 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a  206 (222)
                      .+.-..+.|.++...|++++|+..+.+|+.+        +|+-+.+|..+|.+|..+|++++|+    ..+      ++|
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~a~~~~g~~~~~l~~~~~A~----~~~------~~a  137 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--------DPSNTKALYRRAQGWQGLKEYDQAL----ADL------KKA  137 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHH----HHH------HHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhh--------hhhhhhHHHhHHHHHHHccCHHHHH----HHH------HHH
Confidence            4555667799999999999999999999964        6777889999999999999999999    555      566


Q ss_pred             EEE
Q 027539          207 III  209 (222)
Q Consensus       207 ~~i  209 (222)
                      +.+
T Consensus       138 l~l  140 (169)
T d1ihga1         138 QEI  140 (169)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=3.9e-05  Score=60.49  Aligned_cols=57  Identities=12%  Similarity=0.005  Sum_probs=48.8

Q ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+.+  ....|.++..+|++++|++.|.+|+.+        +|+-+.++.++|.+|..+|++++|+
T Consensus        69 ~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~  125 (259)
T d1xnfa_          69 DMPEV--FNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQ  125 (259)
T ss_dssp             CCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHH--HhhhchHHHHHHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHH
Confidence            34445  445699999999999999999999986        4566678999999999999999999

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=4.7e-05  Score=58.76  Aligned_cols=54  Identities=19%  Similarity=0.108  Sum_probs=48.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      ...|.+++.+|++++|+..+.+|+.+        +|.-..+|..+|.+|+.+|++++|+    .++
T Consensus        66 ~nla~~y~k~~~~~~A~~~~~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~----~~~  119 (170)
T d1p5qa1          66 LNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELAR----ADF  119 (170)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred             HHHHHHHHhhhhcccccchhhhhhhc--------cccchhhhHHHHHHHHHhhhHHHHH----HHH
Confidence            45699999999999999999999987        5777889999999999999999999    655

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2.2e-05  Score=63.52  Aligned_cols=62  Identities=31%  Similarity=0.351  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEe
Q 027539          131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIIT  210 (222)
Q Consensus       131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~  210 (222)
                      ....|.++..+|++++|+++|.+++.        .+|+.+.++.+||.+|..+|++++|+    .++      ++|+.+.
T Consensus       308 ~~~l~~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~g~~~~A~----~~~------~~al~l~  369 (388)
T d1w3ba_         308 LNNLANIKREQGNIEEAVRLYRKALE--------VFPEFAAAHSNLASVLQQQGKLQEAL----MHY------KEAIRIS  369 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTT--------SCTTCHHHHHHHHHHHHTTTCCHHHH----HHH------HHHHTTC
T ss_pred             hhHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHH----HHH------HHHHHhC
Confidence            34446777777777777777777764        47888899999999999999999999    666      5666553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=8.9e-05  Score=54.96  Aligned_cols=66  Identities=14%  Similarity=0.086  Sum_probs=46.7

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPY-HRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~-HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      .|.++.+  .++-|..++..++.++    +.+|+.+++++.-.. .|+-+.++.+||.+|+.+|++++|+    .++
T Consensus        29 ~p~~~~~--~~n~a~~L~~s~~~~d----~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~----~~~   95 (122)
T d1nzna_          29 GSVSKST--QFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL----KYV   95 (122)
T ss_dssp             SCCCHHH--HHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred             CCCCHHH--HHHHHHHHHHhcchHH----HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHH----HHH
Confidence            3444454  4445888887665543    455666666665433 3666889999999999999999999    666

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=3.2e-05  Score=61.02  Aligned_cols=54  Identities=13%  Similarity=0.124  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..+-.+|+.|..+..+|+++.|++.|.+       + .+.||   ..+.+||.+|+.+|++++|+
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~-------i-~~~~~---~~~~nlG~~~~~~g~~~~A~   56 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSA-------V-QDPHS---RICFNIGCMYTILKNMTEAE   56 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHT-------S-SSCCH---HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHh-------c-CCCCH---HHHHHHHHHHHHcCCchhHH
Confidence            4577899999999999999998887764       2 34455   46889999999999999999

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=3.6e-05  Score=61.17  Aligned_cols=63  Identities=16%  Similarity=0.229  Sum_probs=48.6

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +.-++-..-.|++++.+|++++|++++.+||.+...   ..++..+.+++.||.+|+.+|++++|+
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~---~~~~~~~~a~~~lg~~~~~~g~~~~A~   71 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSL   71 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC---CCcHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            333444444689999999999999999999875432   334556778999999999999999999

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.35  E-value=9.5e-05  Score=56.67  Aligned_cols=53  Identities=15%  Similarity=0.125  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -..+.|.++...|++++|+..+++++.+        +|.-..+|.++|.+|..+|++++|+
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l--------~p~~~~a~~~~~~~~~~l~~~~~A~  118 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAK  118 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhc--------ccchHHHHHHHHHHHHHcCCHHHHH
Confidence            3456799999999999999999999976        6777899999999999999999999

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=5e-05  Score=61.37  Aligned_cols=51  Identities=12%  Similarity=0.197  Sum_probs=40.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ++.|..+.++|++++|.+.|++++..        +|+-..++..||.+|+.+|++++|+
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~   53 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRSA   53 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            56788888888888888888888764        4555567888888888888888888

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=0.00016  Score=59.47  Aligned_cols=63  Identities=21%  Similarity=0.146  Sum_probs=56.0

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-cCChhhHh
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH-TGDFNQVR  190 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~-~Gd~~eAi  190 (222)
                      ..+..+.+.|.++..+|++++|.+.|++|+.++.+.  ...+..+.++.+||.+|+. +|++++|+
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~A~  138 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAI  138 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--ccchhHHHHHHHHHHhHhhHHHHHHHHH
Confidence            346778889999999999999999999999999885  4577788999999999976 69999999

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.06  E-value=0.00012  Score=57.59  Aligned_cols=92  Identities=11%  Similarity=-0.049  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH--------------HHhCCCChHHHHHHHHHHHHHHHcCChhhHhhc
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMI--------------AVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQS  192 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~e--------------qV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~  192 (222)
                      -.+...+.|.....+|+.++|.+.|.+||.++.              .....+++....++.+++.++..+|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            346778899999999999999999999999753              111223566778999999999999999999932


Q ss_pred             h-----------------HHhhhhhCCCCceEEEeeeechhcc
Q 027539          193 S-----------------VVFQCQLGDSKSSIIITSFCTEVLI  218 (222)
Q Consensus       193 ~-----------------~~~~~~~~~~~~a~~i~e~~~~~~~  218 (222)
                      .                 ..-+.++|++..|+..++++..+|.
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~  132 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA  132 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            1                 2223467788888888887766653

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00022  Score=63.78  Aligned_cols=65  Identities=20%  Similarity=0.220  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEE
Q 027539          129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSII  208 (222)
Q Consensus       129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~  208 (222)
                      +-+...|.++..+|++++|...|.+|+.+        .|+.+..|++||.+|...|++.+|+    .++      +||+.
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~Lg~~~~~~~~~~~A~----~~y------~ral~  214 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTI----FYY------CRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHH----HHH------HHHHS
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHHcCCHHHHH----HHH------HHHHh
Confidence            45667799999999999999999999987        6999999999999999999999999    888      78887


Q ss_pred             Eee
Q 027539          209 ITS  211 (222)
Q Consensus       209 i~e  211 (222)
                      +..
T Consensus       215 ~~~  217 (497)
T d1ya0a1         215 VKF  217 (497)
T ss_dssp             SSB
T ss_pred             CCC
Confidence            654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0018  Score=54.16  Aligned_cols=60  Identities=3%  Similarity=-0.106  Sum_probs=50.4

Q ss_pred             cccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          121 VGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       121 ~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      .+|.+..+...  .|.++...|++++|++.+.+|+.+        +|.-..+|+++|.++..+|++++|+
T Consensus       107 ~~p~~~~a~~~--~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al  166 (315)
T d2h6fa1         107 EQPKNYQVWHH--RRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNEL  166 (315)
T ss_dssp             HCTTCHHHHHH--HHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HHHhhhhHHHH--HhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHH
Confidence            34556555444  499999999999999999999976        6777889999999999999999999

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0041  Score=51.78  Aligned_cols=50  Identities=10%  Similarity=0.092  Sum_probs=43.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCC-hhhHh
Q 027539          133 ESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGD-FNQVR  190 (222)
Q Consensus       133 e~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd-~~eAi  190 (222)
                      ..|.++..++++++|++++.+|+.+        .|+-+++|++.+.++..+|+ +++|+
T Consensus        48 ~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal   98 (315)
T d2h6fa1          48 YFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEM   98 (315)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHH
Confidence            3488899999999999999999985        67777889999999998874 88888

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.79  E-value=0.0012  Score=49.49  Aligned_cols=62  Identities=11%  Similarity=0.020  Sum_probs=40.0

Q ss_pred             cccCchhHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCC
Q 027539          121 VGCTSADGRTLLESSKIALDKGKLE---DAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGD  185 (222)
Q Consensus       121 ~~p~s~~a~~lle~g~~~l~qG~~e---~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd  185 (222)
                      .+|..+++...+  |.++...+++.   ++...+.+|+..++++. .+.|+-+.+|.+||.+|..+|+
T Consensus        26 ~~P~~~~~~~~~--g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl-~l~P~~~~a~~~lG~~y~~~g~   90 (145)
T d1zu2a1          26 SNPLDADNLTRW--GGVLLELSQFHSISDAKQMIQEAITKFEEAL-LIDPKKDEAVWCIGNAYTSFAF   90 (145)
T ss_dssp             HCTTCHHHHHHH--HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hCCcchHHHHHH--HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-HhcchhhHHHhhHHHHHHHccc
Confidence            356666665554  87776544332   34444555555555554 3467778899999999999876

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.016  Score=39.80  Aligned_cols=49  Identities=22%  Similarity=0.179  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHT  183 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~  183 (222)
                      .+.-+...|.++...|++++|++.|++||.+     -|.|+   .++++|+.+...+
T Consensus        45 ~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-----~P~~~---~a~~Nl~~~~~~l   93 (95)
T d1tjca_          45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPEHQ---RANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-----CcCCH---HHHHHHHHHHHHh
Confidence            3444556699999999999999999999987     35565   5777887766554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.45  E-value=0.009  Score=44.84  Aligned_cols=58  Identities=5%  Similarity=0.084  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHcCChhhHh
Q 027539          128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRT-TASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpe-vA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ...-|+-|-..+.....+    -..+++.++++++- .+|+ -..|+.+||..|+++|+|++|.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~----d~~~gI~lLe~~~~-~~p~~~rd~lY~Lav~yyklgdy~~A~   93 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVN----DERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAK   93 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cchHHHHHHHHHcCCcHH----HHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHhhHHHHH
Confidence            455566666666544332    24455555566552 2343 4589999999999999999999

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=94.94  E-value=0.0058  Score=50.60  Aligned_cols=49  Identities=29%  Similarity=0.325  Sum_probs=45.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +++..+.+|++++|++.|.+++.        .+|+-+..+.+|+.+|..+|++++|+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~--------~~P~d~~ar~~La~lL~~~G~~e~A~   50 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERAD   50 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            46778899999999999999985        68999999999999999999999999

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.72  E-value=0.034  Score=42.85  Aligned_cols=53  Identities=8%  Similarity=0.073  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      -..+.|..+...|++++|+.++.+++.+        ||.-..+|.+|+.+|+.+|++++|+
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl  121 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDAL  121 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHH
Confidence            3455689999999999999999999974        6777789999999999999999999

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.01  E-value=0.02  Score=46.73  Aligned_cols=51  Identities=10%  Similarity=-0.134  Sum_probs=37.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          135 SKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       135 g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      |..+...|+.++|.+.+.++        .+.+|..+.++..||.+|..+|++++|+    .++
T Consensus       249 ~~~~~~~~~~~~a~~~~~~~--------~~~~p~~~~~~~~l~~~~~~~~~~~eA~----~~~  299 (334)
T d1dcea1         249 VEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETL----QYF  299 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTGGGHHHHH----HHH
T ss_pred             HHHHHHHhhHHHHHHHHHHH--------HhhCchHHHHHHHHHHHHHHCCCHHHHH----HHH
Confidence            33444444455555544443        3889999999999999999999999999    666

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.77  E-value=0.47  Score=32.94  Aligned_cols=60  Identities=8%  Similarity=0.063  Sum_probs=48.5

Q ss_pred             ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHH
Q 027539          122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVLY  181 (222)
Q Consensus       122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy~  181 (222)
                      +|...-|-+++..|..+-+.|++++|+.+|.+|+.++..+. ....|.....+.....=|.
T Consensus         9 ~~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl   69 (93)
T d1wfda_           9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYM   69 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            34456778889999999999999999999999999999877 4567777777776666655

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.69  E-value=0.021  Score=46.55  Aligned_cols=50  Identities=8%  Similarity=0.032  Sum_probs=42.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          133 ESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       133 e~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      ..|..+..+|.+++|++.+.+++.+        ||+-..+++++|.++..+|++++|+
T Consensus       149 ~~~~~~~~~~~~~~Al~~~~~~i~~--------~p~~~~a~~~l~~~~~~~~~~~~A~  198 (334)
T d1dcea1         149 RRFVAAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSG  198 (334)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcCHHHHH
Confidence            3578888889999888888887654        7888889999999999999999887

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=91.35  E-value=0.15  Score=41.65  Aligned_cols=68  Identities=13%  Similarity=0.073  Sum_probs=46.6

Q ss_pred             cccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--------------------HHHh-C------CCChHHHHHH
Q 027539          121 VGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARM--------------------IAVC-G------PYHRTTASTY  173 (222)
Q Consensus       121 ~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~--------------------eqV~-G------~~HpevA~~y  173 (222)
                      .+|..+.++..+  |+.++..|++++|...|.+++.+.                    +++. |      ..+|+-...+
T Consensus        25 ~~P~d~~ar~~L--a~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~  102 (264)
T d1zbpa1          25 ASPKDASLRSSF--IELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKS  102 (264)
T ss_dssp             TCTTCHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHH
T ss_pred             HCCCCHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHH
Confidence            356666666665  999999999999999999998741                    1111 1      1345555666


Q ss_pred             HHHHHHHHHcCChhhHh
Q 027539          174 SLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       174 ~~LA~vy~~~Gd~~eAi  190 (222)
                      ...|.++...|++++|+
T Consensus       103 l~~a~~~~~~gd~~~A~  119 (264)
T d1zbpa1         103 LVSFNLSMVSQDYEQVS  119 (264)
T ss_dssp             HHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHhCCCHHHHH
Confidence            66666677777777776

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=90.76  E-value=0.21  Score=38.67  Aligned_cols=54  Identities=19%  Similarity=0.214  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHh
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVR  190 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi  190 (222)
                      +++.++..|..+..+|++++|+++|++|...     |  +   +.++.+||.+|..    ..++..|.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-----g--~---~~A~~~Lg~~y~~G~~~~~d~~~a~   58 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----K--E---NSGCFNLGVLYYQGQGVEKNLKKAA   58 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----T--C---HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----C--C---HHHHHHHHHHHHcCCCcchhHHHHH
Confidence            3567888899999999999999999999653     3  3   3467779999987    45666666

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.23  E-value=0.065  Score=47.08  Aligned_cols=52  Identities=8%  Similarity=-0.012  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539          132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ  197 (222)
Q Consensus       132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~  197 (222)
                      ...|..+..+|+.++|...+.+++.+          +-..|+.+||.++...|++++|+    .++
T Consensus       124 ~~lg~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~LG~l~~~~~~~~~A~----~~y  175 (497)
T d1ya0a1         124 SQLGIISNKQTHTSAIVKPQSSSCSY----------ICQHCLVHLGDIARYRNQTSQAE----SYY  175 (497)
T ss_dssp             -------------------CCHHHHH----------HHHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred             HHhHHHHHhCCCHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHHcccHHHHH----HHH
Confidence            34588889999999999999988864          34579999999999999999999    666

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.23  E-value=0.29  Score=32.85  Aligned_cols=55  Identities=11%  Similarity=0.083  Sum_probs=41.1

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHH
Q 027539          126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC--GPYHRTTASTYSLLAVVL  180 (222)
Q Consensus       126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~--G~~HpevA~~y~~LA~vy  180 (222)
                      ..|.++...|...-..|++++|+.+|.+|+..+..++  .+..|..-..++.-..-|
T Consensus         9 ~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~~k~~l~~k~~~Y   65 (77)
T d1wr0a1           9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEY   65 (77)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            4577888888889999999999999999999999875  344555444444443333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.75  E-value=0.37  Score=34.38  Aligned_cols=48  Identities=13%  Similarity=0.055  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 027539          127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH  182 (222)
Q Consensus       127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~  182 (222)
                      .+.-++..|.++...|++++|.+.|.++|.+     .|.|++   +..+++.|...
T Consensus        71 ~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~-----~P~~~~---A~~l~~~I~~~  118 (122)
T d1nzna_          71 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-----EPQNNQ---AKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----CcCCHH---HHHHHHHHHHH
Confidence            3455778899999999999999999999986     366654   55556555543

>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase 8, USH8 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: USP8 N-terminal domain-like
family: USP8 N-terminal domain-like
domain: Ubiquitin carboxyl-terminal hydrolase 8, USH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.85  E-value=0.82  Score=33.94  Aligned_cols=53  Identities=6%  Similarity=-0.057  Sum_probs=44.1

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 027539          125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVV  179 (222)
Q Consensus       125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~v  179 (222)
                      .-.|.+++..|..+..+|+.+.|+-||.+-+++++.+  +-|||-...=.....+
T Consensus        32 ~rsa~~l~~~A~~y~~egd~E~AYily~Ry~~L~eki--~kHpdyk~~~~~~~~~   84 (134)
T d2a9ua1          32 VHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPDFKQQQDYFHSI   84 (134)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--HcCcccccchhHHHHH
Confidence            4678899999999999999999999999999999654  8899987654444333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.50  E-value=0.046  Score=40.30  Aligned_cols=42  Identities=10%  Similarity=0.025  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539          148 VNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR  190 (222)
Q Consensus       148 ~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi  190 (222)
                      +..|.+|+..++++.- ..|.-+.++.++|.+++.++++.++.
T Consensus        10 ~~~fe~A~~~~e~al~-~~P~~~~~~~~~g~~l~~~~~~~~~~   51 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYK-SNPLDADNLTRWGGVLLELSQFHSIS   51 (145)
T ss_dssp             HHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HccHHHHHHHHHHHHh-hCCcchHHHHHHHHHHHHhhhhhhhh
Confidence            3445555555555442 35777889999999999877765433