Citrus Sinensis ID: 027560

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MGETLISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEcccccEEEEEEEEEcccccccccEEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccccccccccEEEEEEEEEcccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHccHHHHHHHHHHHHHHHHHHHHHccEEEEEccccccEEEEEEccccEEEEEEEEEEccccccccccEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEEEccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MGETLISLDRATVLPLILLLCLACYICVVPVTEAiwlqipssgtkcvseeiNSNVVVLADYyvideahpehpptvsakvtspygnnlhhnenvthgqfafttteagNYMACFwlgsnpqkvadatlgldwrigfsakdwesvakkdkieGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI
Flexible Loop (DISEMBL)
mgetlisldrATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTryfqkkkli
Low Complexity Region (SEG)
MGETLISLDRATvlplilllclacyicvvPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI
Disordered region (IsUnstruct)
****LISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEA***************YGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQ*****
Disordered Region (DISOPRED)
*************LPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLH******HGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKD***********GVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI
Disordered Region (DISEMBL)
MGETLISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI
Disordered Region (DISPRO)
**ETLISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKL*
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGETLISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKxxxxxxxxxxxxxxxxxxxxxxxxxxxxEAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q8RWM6	216	Transmembrane emp24 domai	yes	no	0.923	0.949	0.679	3e-78
Q6IDL4	217	Transmembrane emp24 domai	no	no	0.932	0.953	0.617	1e-73
Q9FVU0	212	Transmembrane emp24 domai	no	no	0.950	0.995	0.577	4e-69
F4J4Y0	217	Transmembrane emp24 domai	no	no	0.932	0.953	0.504	2e-53
Q9LQY3	214	Transmembrane emp24 domai	no	no	0.941	0.976	0.420	2e-44
Q8GYG1	212	Transmembrane emp24 domai	no	no	0.900	0.943	0.412	1e-41
Q8VY92	214	Transmembrane emp24 domai	no	no	0.900	0.934	0.411	4e-40
O81045	213	Transmembrane emp24 domai	no	no	0.860	0.896	0.398	2e-38
Q9LJV9	225	Transmembrane emp24 domai	no	no	0.851	0.84	0.367	1e-33
Q5E971	219	Transmembrane emp24 domai	yes	no	0.846	0.858	0.349	1e-29

>sp|Q8RWM6|P24D5_ARATH Transmembrane emp24 domain-containing protein p24delta5 OS=Arabidopsis thaliana GN=At1g21900 PE=1 SV=1

 Score =  291 bits (745), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 140/206 (67%), Positives = 163/206 (79%), Gaps = 1/206 (0%)

Query: 18  LLLCLACYICVVPVTEAIWLQIPSSG-TKCVSEEINSNVVVLADYYVIDEAHPEHPPTVS 76
           L L +  +   V   EAIWL IP++G TKCVSEEI SNVVVLADYYV+DE +PE+ P VS
Sbjct: 11  LFLTVVLFFLTVNYGEAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPENTPAVS 70

Query: 77  AKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSA 136
           +KVTSPYGNNLHH ENVTHGQFAFTT EAGNY+ACFW+ S+       TLG+DW++G +A
Sbjct: 71  SKVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAA 130

Query: 137 KDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSIL 196
           KDW+SVAKK+KIEGVEL L+RLE  V SI ENL ++K REAEMREVSE TNSRVAW SI+
Sbjct: 131 KDWDSVAKKEKIEGVELQLRRLEGLVLSIRENLNYIKDREAEMREVSETTNSRVAWFSIM 190

Query: 197 SLGVCIAVSSLQLWYLTRYFQKKKLI 222
           SLGVC+ V   Q+ YL RYF KKKLI
Sbjct: 191 SLGVCVVVVGSQILYLKRYFHKKKLI 216

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). Interacts with p24beta2 at endoplasmic reticulum export sites for endoplasmic reticulum exit and coupled transport to the Golgi apparatus. Once in the Golgi, interacts very efficiently with the COPI machinery for retrograde transport back to the endoplasmic reticulum.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6IDL4|P24D3_ARATH Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana GN=At1g09580 PE=1 SV=1

 Score =  275 bits (704), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 129/209 (61%), Positives = 162/209 (77%), Gaps = 2/209 (0%)

Query: 14  LPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPP 73
            P   LL     + ++PV EA+WL +P +GTKCVSEEI SNVVVLADY +I E H E  P
Sbjct: 11  FPTAFLLLFLVPV-MIPVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIISEDH-EVMP 68

Query: 74  TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIG 133
           T+S KVTSPYGNNLH+ ENVTHGQFAFTT E+GNY+ACFW         + ++ +DWR G
Sbjct: 69  TISVKVTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTG 128

Query: 134 FSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWL 193
            +AKDW S+AKK+KIEGVEL +++LE  V++IHEN+L+L++REA+MR +SE TNSRVAW 
Sbjct: 129 IAAKDWASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNREADMRTMSEKTNSRVAWY 188

Query: 194 SILSLGVCIAVSSLQLWYLTRYFQKKKLI 222
           SI+SLGVCIAVS  Q+ YL +YF+KKKLI
Sbjct: 189 SIMSLGVCIAVSGFQVLYLKQYFEKKKLI 217

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVU0|P24D4_ARATH Transmembrane emp24 domain-containing protein p24delta4 OS=Arabidopsis thaliana GN=At1g57620 PE=1 SV=1

 Score =  260 bits (665), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 123/213 (57%), Positives = 160/213 (75%), Gaps = 2/213 (0%)

Query: 10  RATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHP 69
           +  ++P  +LL  A    + P+ EA+WL +P +G+KCVSEEI SNV+VLADY VI E H 
Sbjct: 2   KKKMIPTTILLS-ALIFSLSPICEAVWLTVPHTGSKCVSEEIQSNVIVLADYLVISEEHS 60

Query: 70  EHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLD 129
             P TVS KVT+PYG  LHH EN T+GQFAFTT E+G Y+ACF   +      D ++ +D
Sbjct: 61  IFP-TVSVKVTAPYGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINID 119

Query: 130 WRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSR 189
           W+ G +AKDW+S+A+K+KIEGVEL  K+LE  V++IHENL++L++REAEMR VSE TNSR
Sbjct: 120 WKTGIAAKDWDSIARKEKIEGVELEFKKLEGAVEAIHENLIYLRNREAEMRIVSEKTNSR 179

Query: 190 VAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI 222
           VAW SI+SLG+CI VS LQ+ YL +YF+KKKLI
Sbjct: 180 VAWYSIMSLGICIVVSGLQILYLKQYFEKKKLI 212

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|F4J4Y0|P24D6_ARATH Transmembrane emp24 domain-containing protein p24delta6 OS=Arabidopsis thaliana GN=At3g10780 PE=1 SV=1

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/210 (50%), Positives = 141/210 (67%), Gaps = 3/210 (1%)

Query: 16  LILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTV 75
            I L+ LA    + P  EAIWL +P SG +CV EEI +NVVV+ DY  ID+A  +  PT+
Sbjct: 8   FIGLIYLAGGGSLFPGVEAIWLTVPESGERCVYEEIQANVVVVLDYICIDDAFTQLGPTL 67

Query: 76  SAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWL---GSNPQKVADATLGLDWRI 132
             +VTSPYG  L+   NVTHGQ AFTT+E+G ++AC  +    S+    +   + LDW++
Sbjct: 68  DVRVTSPYGKELYKIANVTHGQAAFTTSESGTFLACLAMHHDQSHHSVNSSVIVSLDWKM 127

Query: 133 GFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAW 192
           G  AKDW+SVAKK+KIEGVEL ++R      +I  N+L+L+ REA MRE++E TN+RV  
Sbjct: 128 GIRAKDWDSVAKKEKIEGVELEIRRSTEYASAIRANILYLRIREAYMREINEKTNTRVNQ 187

Query: 193 LSILSLGVCIAVSSLQLWYLTRYFQKKKLI 222
           L ++SLGV I VS  Q+ YL RYF KKKLI
Sbjct: 188 LGLMSLGVAIVVSISQVLYLKRYFLKKKLI 217

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9 OS=Arabidopsis thaliana GN=At1g26690 PE=2 SV=1

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/221 (42%), Positives = 139/221 (62%), Gaps = 12/221 (5%)

Query: 5   LISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVI 64
           L SL+  T+L   L L ++       V++++  ++ S  TKC+SE+I SN + +  Y V+
Sbjct: 3   LRSLNLCTIL---LFLAISS-----QVSQSLHFELQSGRTKCISEDIKSNSMTVGKYTVV 54

Query: 65  D--EAHPE-HPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKV 121
           +  EAHP      +S +VTS YGN  HH E+V  GQFAFT  E+G+YMAC+    +  +V
Sbjct: 55  NPNEAHPSPQSHKISIRVTSSYGNTYHHAEDVESGQFAFTAVESGDYMACYTAVDHKPEV 114

Query: 122 ADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMRE 181
              ++  DWR G  +K W SVAKK ++E +E  +KRL   V SIHE + +L+ RE EM+ 
Sbjct: 115 T-LSIDFDWRTGVQSKSWSSVAKKSQVEVMEFDVKRLIETVNSIHEEMFYLREREEEMQN 173

Query: 182 VSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI 222
           ++  TNS++AWLS LSL VC+ V+ +Q  +L  +F+KKK+I
Sbjct: 174 LNRATNSKMAWLSFLSLFVCLGVAGMQFVHLKTFFEKKKVI 214

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYG1|P24D7_ARATH Transmembrane emp24 domain-containing protein p24delta7 OS=Arabidopsis thaliana GN=At1g14010 PE=2 SV=1

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 87/211 (41%), Positives = 133/211 (63%), Gaps = 11/211 (5%)

Query: 17  ILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PT- 74
           I+LL L+    + PVT +I  ++ S  TKC+SEEI++N + +  Y +I+  H +HP P+ 
Sbjct: 8   IVLLILSI---LSPVTLSIRYELLSGHTKCISEEIHANAMTIGKYSIIN-PHEDHPLPSS 63

Query: 75  --VSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACF-WLGSNPQKVADATLGLDWR 131
             V+ +VTSP G   H ++ V  GQF+F   E G+Y++CF  +   P+      +  DWR
Sbjct: 64  HKVTVRVTSPQGTAYHESDGVESGQFSFVAVETGDYISCFSAVDHKPETTL--IIDFDWR 121

Query: 132 IGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVA 191
            G   KDW +VAKK ++E +E  +K+L   V  IH+ + +L+ RE EM  ++  TNS++A
Sbjct: 122 TGIHTKDWSNVAKKSQVETMEFEVKKLFETVNGIHDEMFYLRDREEEMHNLNIATNSKMA 181

Query: 192 WLSILSLGVCIAVSSLQLWYLTRYFQKKKLI 222
           WLS +SL VC++V+ LQ W+L  +FQKKKLI
Sbjct: 182 WLSFVSLAVCLSVAGLQFWHLKTFFQKKKLI 212

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY92|P24DA_ARATH Transmembrane emp24 domain-containing protein p24delta10 OS=Arabidopsis thaliana GN=At1g69460 PE=1 SV=1

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 131/209 (62%), Gaps = 9/209 (4%)

Query: 18  LLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH--PPT- 74
           +LL LA +    P++ ++   + S  TKC++E+I SN + +  Y  ID  H     P T 
Sbjct: 11  MLLILAIW---SPISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYN-IDNPHEGQALPQTH 66

Query: 75  -VSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIG 133
            +S KVTS  GNN HH E V  GQFAF+  EAG+YMACF    +  +V+  ++  +W+ G
Sbjct: 67  KISVKVTSNSGNNYHHAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEVS-LSIDFEWKTG 125

Query: 134 FSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWL 193
             +K W +VAKK ++E +E  +K L   V SIHE + +L+ RE EM++++  TN+++AWL
Sbjct: 126 VQSKSWANVAKKSQVEVMEFEVKSLLDTVNSIHEEMYYLRDREEEMQDLNRSTNTKMAWL 185

Query: 194 SILSLGVCIAVSSLQLWYLTRYFQKKKLI 222
           S+LS  VCI V+ +Q  +L  +F+KKK+I
Sbjct: 186 SVLSFFVCIGVAGMQFLHLKTFFEKKKVI 214

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|O81045|P24D8_ARATH Transmembrane emp24 domain-containing protein p24delta8 OS=Arabidopsis thaliana GN=At2g03290 PE=1 SV=1

 Score =  159 bits (401), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/198 (39%), Positives = 122/198 (61%), Gaps = 7/198 (3%)

Query: 30  PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP----PTVSAKVTSPYGN 85
           P T ++  ++ SS TKC+ EEI+ N + +  Y++++     HP      +  KV  P G 
Sbjct: 18  PRTLSMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDNHPLPDSHKIIVKVMPPQGK 77

Query: 86  NLHHNENVTHGQFAFTTTEAGNYMACFW-LGSNPQKVADATLGLDWRIGFSAKDWESVAK 144
           NLH  + V  GQF+FT  E G+Y+AC   +   P+     T+  DW+ G  +K+W +VAK
Sbjct: 78  NLHEADKVEAGQFSFTAYENGSYVACITAIDYKPETTL--TIDFDWKTGVHSKEWTNVAK 135

Query: 145 KDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAV 204
           K +++ +E  +K L   V SIHE + +L+ RE EM+E++  TNS++AWLS  SL VC++V
Sbjct: 136 KSQVDMMEYQVKTLMDTVISIHEEMYYLREREEEMQELNRSTNSKMAWLSFGSLVVCLSV 195

Query: 205 SSLQLWYLTRYFQKKKLI 222
           + LQ W+L  +F+KKKLI
Sbjct: 196 AGLQFWHLKTFFEKKKLI 213

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJV9|P24DB_ARATH Transmembrane emp24 domain-containing protein p24delta11 OS=Arabidopsis thaliana GN=At3g29070 PE=2 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 119/193 (61%), Gaps = 4/193 (2%)

Query: 33  EAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH-PPT--VSAKVTSPYGNNLHH 89
           E++ L + S  TKC+S++I +N + +  Y +++     H PP+  +   V+SP G + HH
Sbjct: 34  ESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFVTVSSPKGKSHHH 93

Query: 90  NENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIE 149
            ENV  G+F FT  E G+YM CF +    +  A   +  +W+ G  AKDW ++AK+ +I 
Sbjct: 94  AENVESGKFVFTAEETGDYMTCF-VAPGYRPTAKFAVDFEWKSGVEAKDWTTIAKRGQIT 152

Query: 150 GVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQL 209
            +E+ +++L    ++IHE +  L  RE EM+E++  TNSR+A LS+LS  V ++V+ LQL
Sbjct: 153 MLEVEVRKLLDVTETIHEEMFQLIEREREMQELNRSTNSRMAALSLLSFVVTMSVAGLQL 212

Query: 210 WYLTRYFQKKKLI 222
            +L  + ++KKL+
Sbjct: 213 RHLKSFLERKKLL 225

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5E971|TMEDA_BOVIN Transmembrane emp24 domain-containing protein 10 OS=Bos taurus GN=TMED10 PE=2 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 112/189 (59%), Gaps = 1/189 (0%)

Query: 34  AIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENV 93
           AI   +P +  KC+ EEI+ +++V   Y + D++          K+T   G+ L+  E+ 
Sbjct: 31  AISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTHLKITDSAGHILYSKEDA 90

Query: 94  THGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVEL 153
           T G+FAFTT +   +  CF       ++ D  + LD + G  AK++E +AK +K++ +E+
Sbjct: 91  TKGKFAFTTEDYDMFEVCFE-SKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEV 149

Query: 154 HLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLT 213
            L+RLE   +SI  +  ++K RE EMR+ +E TN+RV + SI S+   I +++ Q++YL 
Sbjct: 150 ELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLR 209

Query: 214 RYFQKKKLI 222
           R+F+ KKLI
Sbjct: 210 RFFKAKKLI 218

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED2 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport involved in the biogenesis of COPI vesicles and vesicle coat recruitment. On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation. Increases coatomer-dependent GTPase-activating activity of ARFGAP2. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2LR1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Involved in trafficking of amyloid beta A4 protein and soluble APP-beta release (independent of modulation of gamma-secretase activity). As part of the presenilin-dependent gamma-secretase complex regulates gamma-cleavages of the amyloid beta A4 protein to yield amyloid-beta 40 (Abeta40). Involved in organization of the Golgi apparatus.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
255545458	219	Transmembrane emp24 domain-containing pr	0.950	0.963	0.706	2e-86
118484307	222	unknown [Populus trichocarpa]	0.959	0.959	0.686	1e-82
224066849	221	predicted protein [Populus trichocarpa]	0.959	0.963	0.686	1e-82
147856607	207	hypothetical protein VITISV_039788 [Viti	0.873	0.937	0.711	7e-79
225448026	216	PREDICTED: transmembrane emp24 domain-co	0.873	0.898	0.711	8e-79
298204564	192	unnamed protein product [Vitis vinifera]	0.864	1.0	0.713	2e-77
357461567	217	Transmembrane emp24 domain-containing pr	0.914	0.935	0.676	5e-77
15219136	216	emp24/gp25L/p24 family/GOLD domain-conta	0.923	0.949	0.679	1e-76
217071424	217	unknown [Medicago truncatula]	0.914	0.935	0.676	4e-76
297850614	216	emp24/gp25L/p24 family protein [Arabidop	0.918	0.944	0.673	5e-76

>gi|255545458|ref|XP_002513789.1| Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis] gi|223546875|gb|EEF48372.1| Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 149/211 (70%), Positives = 176/211 (83%)

Query: 12  TVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH 71
           +++ ++ L  L     V+PV EAIW  IPSSGTKCVSEEI +NVVVLADYY+I+E  P+H
Sbjct: 9   SLVAVLSLFVLCSSFDVIPVAEAIWFTIPSSGTKCVSEEIQNNVVVLADYYIINEDQPQH 68

Query: 72  PPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWR 131
            PT+S KVTSPYGNNLHHNENVTHGQFAFTT+EAGNY+ACFWL ++ Q+    T+ LDWR
Sbjct: 69  APTISVKVTSPYGNNLHHNENVTHGQFAFTTSEAGNYLACFWLDNHQQQAGTTTMSLDWR 128

Query: 132 IGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVA 191
           IG +AKDW+SVA+K+KIEGVEL L RLE  VQ+IH NL++LK REAEMREVSE TN+RVA
Sbjct: 129 IGIAAKDWDSVARKEKIEGVELDLTRLEGAVQAIHTNLIYLKEREAEMREVSEKTNARVA 188

Query: 192 WLSILSLGVCIAVSSLQLWYLTRYFQKKKLI 222
           W SI+SLGVCIAVS LQLW+L RYFQKKKLI
Sbjct: 189 WFSIMSLGVCIAVSGLQLWHLKRYFQKKKLI 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484307|gb|ABK94032.1| unknown [Populus trichocarpa]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 147/214 (68%), Positives = 175/214 (81%), Gaps = 1/214 (0%)

Query: 10  RATVLPL-ILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAH 68
           RA V  L ++LLCL     +VPV EAIWL IP+SGTKCVSEEI ++VVVLADYYV++E H
Sbjct: 9   RAGVTALSLILLCLTISNNIVPVAEAIWLSIPNSGTKCVSEEIQNDVVVLADYYVLNEEH 68

Query: 69  PEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGL 128
           PEHP TV+ +VTSPYGNNLHHNEN THGQFAFTT+E GNY+ACF L  + +     TL L
Sbjct: 69  PEHPVTVTVRVTSPYGNNLHHNENATHGQFAFTTSEGGNYLACFTLDGHQEPATGVTLSL 128

Query: 129 DWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNS 188
           DW+IG +AKDW+SVAKK+KIEGVEL +++L+   ++IH NLL+LK REA+MREVSE TNS
Sbjct: 129 DWKIGIAAKDWDSVAKKEKIEGVELEVRKLKDHAEAIHNNLLYLKQREADMREVSEKTNS 188

Query: 189 RVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI 222
           RVAW SI+SLGVCI VS LQLW+L RYFQKKKLI
Sbjct: 189 RVAWFSIMSLGVCIVVSVLQLWHLKRYFQKKKLI 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066849|ref|XP_002302245.1| predicted protein [Populus trichocarpa] gi|222843971|gb|EEE81518.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 147/214 (68%), Positives = 175/214 (81%), Gaps = 1/214 (0%)

Query: 10  RATVLPL-ILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAH 68
           RA V  L ++LLCL     +VPV EAIWL IP+SGTKCVSEEI ++VVVLADYYV++E H
Sbjct: 8   RAGVTALSLILLCLTISNNIVPVAEAIWLSIPNSGTKCVSEEIQNDVVVLADYYVLNEEH 67

Query: 69  PEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGL 128
           PEHP TV+ +VTSPYGNNLHHNEN THGQFAFTT+E GNY+ACF L  + +     TL L
Sbjct: 68  PEHPVTVTVRVTSPYGNNLHHNENATHGQFAFTTSEGGNYLACFTLDGHQEPATGVTLSL 127

Query: 129 DWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNS 188
           DW+IG +AKDW+SVAKK+KIEGVEL +++L+   ++IH NLL+LK REA+MREVSE TNS
Sbjct: 128 DWKIGIAAKDWDSVAKKEKIEGVELEVRKLKDHAEAIHNNLLYLKQREADMREVSEKTNS 187

Query: 189 RVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI 222
           RVAW SI+SLGVCI VS LQLW+L RYFQKKKLI
Sbjct: 188 RVAWFSIMSLGVCIVVSVLQLWHLKRYFQKKKLI 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856607|emb|CAN82472.1| hypothetical protein VITISV_039788 [Vitis vinifera]

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 138/194 (71%), Positives = 164/194 (84%)

Query: 29  VPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLH 88
           +P+++AIWL IPSSGTKCVSEEI +NVVVLADY VI + H    PT+S KVTSPYGNNLH
Sbjct: 14  IPMSQAIWLSIPSSGTKCVSEEIQNNVVVLADYLVIPDDHTHSSPTISIKVTSPYGNNLH 73

Query: 89  HNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKI 148
           H ENVTHGQFAFTT+EAGNY+ACFW+  + Q   D ++ LDW+ G  AKDWESVA+K+KI
Sbjct: 74  HKENVTHGQFAFTTSEAGNYLACFWVNGHNQGGGDVSVNLDWKTGIGAKDWESVARKEKI 133

Query: 149 EGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQ 208
           EGVEL L++LE  V++IHENLL+LK REAEMR VSE TN+RVAW SI+SLGVCIAVS+LQ
Sbjct: 134 EGVELELRKLEGAVEAIHENLLYLKSREAEMRMVSEKTNARVAWYSIMSLGVCIAVSALQ 193

Query: 209 LWYLTRYFQKKKLI 222
           LW+L R+FQKKKLI
Sbjct: 194 LWHLKRFFQKKKLI 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448026|ref|XP_002272994.1| PREDICTED: transmembrane emp24 domain-containing protein 10-like [Vitis vinifera]

 Score =  298 bits (764), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 138/194 (71%), Positives = 164/194 (84%)

Query: 29  VPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLH 88
           +P+++AIWL IPSSGTKCVSEEI +NVVVLADY VI + H    PT+S KVTSPYGNNLH
Sbjct: 23  IPMSQAIWLSIPSSGTKCVSEEIQNNVVVLADYLVIPDDHTHSSPTISIKVTSPYGNNLH 82

Query: 89  HNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKI 148
           H ENVTHGQFAFTT+EAGNY+ACFW+  + Q   D ++ LDW+ G  AKDWESVA+K+KI
Sbjct: 83  HKENVTHGQFAFTTSEAGNYLACFWVDGHNQGGGDVSVNLDWKTGIGAKDWESVARKEKI 142

Query: 149 EGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQ 208
           EGVEL L++LE  V++IHENLL+LK REAEMR VSE TN+RVAW SI+SLGVCIAVS+LQ
Sbjct: 143 EGVELELRKLEGAVEAIHENLLYLKSREAEMRMVSEKTNARVAWYSIMSLGVCIAVSALQ 202

Query: 209 LWYLTRYFQKKKLI 222
           LW+L R+FQKKKLI
Sbjct: 203 LWHLKRFFQKKKLI 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204564|emb|CBI23839.3| unnamed protein product [Vitis vinifera]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 137/192 (71%), Positives = 162/192 (84%)

Query: 31  VTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN 90
           +++AIWL IPSSGTKCVSEEI +NVVVLADY VI + H    PT+S KVTSPYGNNLHH 
Sbjct: 1   MSQAIWLSIPSSGTKCVSEEIQNNVVVLADYLVIPDDHTHSSPTISIKVTSPYGNNLHHK 60

Query: 91  ENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEG 150
           ENVTHGQFAFTT+EAGNY+ACFW+  + Q   D ++ LDW+ G  AKDWESVA+K+KIEG
Sbjct: 61  ENVTHGQFAFTTSEAGNYLACFWVDGHNQGGGDVSVNLDWKTGIGAKDWESVARKEKIEG 120

Query: 151 VELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLW 210
           VEL L++LE  V++IHENLL+LK REAEMR VSE TN+RVAW SI+SLGVCIAVS+LQLW
Sbjct: 121 VELELRKLEGAVEAIHENLLYLKSREAEMRMVSEKTNARVAWYSIMSLGVCIAVSALQLW 180

Query: 211 YLTRYFQKKKLI 222
           +L R+FQKKKLI
Sbjct: 181 HLKRFFQKKKLI 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461567|ref|XP_003601065.1| Transmembrane emp24 domain-containing protein [Medicago truncatula] gi|217075442|gb|ACJ86081.1| unknown [Medicago truncatula] gi|355490113|gb|AES71316.1| Transmembrane emp24 domain-containing protein [Medicago truncatula]

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 140/207 (67%), Positives = 173/207 (83%), Gaps = 4/207 (1%)

Query: 17  ILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PTV 75
           ILLLC    I + P T AIWL IPSSGTKCVS++I ++VVVLA+YYV+ +    HP PT+
Sbjct: 14  ILLLCFTSLINI-PQTNAIWLSIPSSGTKCVSQDIQTHVVVLANYYVVADNIQGHPLPTI 72

Query: 76  SAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFS 135
           SAKVTSPYGNNLH+NENVT GQFAFTTTE+G+Y+ACFW+  N + +A +++ L+W+ G S
Sbjct: 73  SAKVTSPYGNNLHNNENVTQGQFAFTTTESGSYVACFWM--NSKNLAGSSISLEWKTGIS 130

Query: 136 AKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSI 195
           AKDW+SVAKK+KIEGVEL L++L+  VQ+IHENLL+LK+REAEMREVSE TN RVAW SI
Sbjct: 131 AKDWDSVAKKEKIEGVELELRKLDGAVQAIHENLLYLKNREAEMREVSEATNGRVAWFSI 190

Query: 196 LSLGVCIAVSSLQLWYLTRYFQKKKLI 222
           +SLGVC++VS LQL YL RYF+KKKLI
Sbjct: 191 MSLGVCVSVSVLQLLYLRRYFRKKKLI 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219136|ref|NP_173608.1| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana] gi|75247611|sp|Q8RWM6.1|P24D5_ARATH RecName: Full=Transmembrane emp24 domain-containing protein p24delta5; AltName: Full=Atp24; AltName: Full=p24 family protein delta1c; Short=p24delta1c; AltName: Full=p24 family protein delta5; Short=p24delta5; Flags: Precursor gi|20260194|gb|AAM12995.1| similar to transmembrane protein [Arabidopsis thaliana] gi|21387055|gb|AAM47931.1| transmembrane protein-like protein [Arabidopsis thaliana] gi|332192049|gb|AEE30170.1| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 140/206 (67%), Positives = 163/206 (79%), Gaps = 1/206 (0%)

Query: 18  LLLCLACYICVVPVTEAIWLQIPSSG-TKCVSEEINSNVVVLADYYVIDEAHPEHPPTVS 76
           L L +  +   V   EAIWL IP++G TKCVSEEI SNVVVLADYYV+DE +PE+ P VS
Sbjct: 11  LFLTVVLFFLTVNYGEAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPENTPAVS 70

Query: 77  AKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSA 136
           +KVTSPYGNNLHH ENVTHGQFAFTT EAGNY+ACFW+ S+       TLG+DW++G +A
Sbjct: 71  SKVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAA 130

Query: 137 KDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSIL 196
           KDW+SVAKK+KIEGVEL L+RLE  V SI ENL ++K REAEMREVSE TNSRVAW SI+
Sbjct: 131 KDWDSVAKKEKIEGVELQLRRLEGLVLSIRENLNYIKDREAEMREVSETTNSRVAWFSIM 190

Query: 197 SLGVCIAVSSLQLWYLTRYFQKKKLI 222
           SLGVC+ V   Q+ YL RYF KKKLI
Sbjct: 191 SLGVCVVVVGSQILYLKRYFHKKKLI 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071424|gb|ACJ84072.1| unknown [Medicago truncatula]

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 140/207 (67%), Positives = 172/207 (83%), Gaps = 4/207 (1%)

Query: 17  ILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PTV 75
           ILLLC    I + P T AIWL IPSSGTK VS++I ++VVVLA+YYV+ +    HP PT+
Sbjct: 14  ILLLCFTSLINI-PQTNAIWLSIPSSGTKRVSQDIQTHVVVLANYYVVADNIQGHPLPTI 72

Query: 76  SAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFS 135
           SAKVTSPYGNNLH+NENVT GQFAFTTTE+G+Y+ACFW+  N + +A +++ L+W+ G S
Sbjct: 73  SAKVTSPYGNNLHNNENVTQGQFAFTTTESGSYVACFWM--NSKNLAGSSISLEWKTGIS 130

Query: 136 AKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSI 195
           AKDW+SVAKK+KIEGVEL LK+L+  VQ+IHENLL+LK+REAEMREVSE TN RVAW SI
Sbjct: 131 AKDWDSVAKKEKIEGVELELKKLDGAVQAIHENLLYLKNREAEMREVSEATNGRVAWFSI 190

Query: 196 LSLGVCIAVSSLQLWYLTRYFQKKKLI 222
           +SLGVC++VS LQL YL RYF+KKKLI
Sbjct: 191 MSLGVCVSVSVLQLLYLRRYFRKKKLI 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850614|ref|XP_002893188.1| emp24/gp25L/p24 family protein [Arabidopsis lyrata subsp. lyrata] gi|297339030|gb|EFH69447.1| emp24/gp25L/p24 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 138/205 (67%), Positives = 164/205 (80%), Gaps = 1/205 (0%)

Query: 19  LLCLACYICVVPVTEAIWLQIPSSG-TKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSA 77
           +L +  ++  V   EAIWL IP++G TKCVSEEI SNVVVLADYYV+DE +PE+ P VS+
Sbjct: 12  VLAVVLFLLTVNYGEAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPENTPAVSS 71

Query: 78  KVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAK 137
           KVTSPYGNNLHH ENVTHGQFAFTT EAGNY+ACF + S        TLG+DW++G +AK
Sbjct: 72  KVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFSIDSTHPLANPITLGVDWKMGIAAK 131

Query: 138 DWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILS 197
           DW+SVAKK+KIEGVEL L+RLE  VQSI EN+ ++K REAEMREVSE TNSRVAW SI+S
Sbjct: 132 DWDSVAKKEKIEGVELQLRRLEGLVQSIRENINYIKDREAEMREVSETTNSRVAWFSIMS 191

Query: 198 LGVCIAVSSLQLWYLTRYFQKKKLI 222
           LGVC+ V+  Q+ YL RYF KKKLI
Sbjct: 192 LGVCVVVAGTQILYLKRYFHKKKLI 216

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2201098	216	p24delta5 "p24 subfamily delta	0.855	0.879	0.717	1.4e-71
TAIR|locus:2012335	217	AT1G09580 [Arabidopsis thalian	0.864	0.884	0.652	9.2e-68
TAIR|locus:2206520	212	AT1G57620 [Arabidopsis thalian	0.864	0.905	0.616	2.6e-63
TAIR|locus:2200630	214	AT1G26690 [Arabidopsis thalian	0.855	0.887	0.443	2.5e-42
TAIR|locus:2014864	212	AT1G14010 [Arabidopsis thalian	0.860	0.900	0.416	2e-40
TAIR|locus:2007196	214	AT1G69460 [Arabidopsis thalian	0.860	0.892	0.416	9.9e-39
TAIR|locus:2056976	213	AT2G03290 [Arabidopsis thalian	0.860	0.896	0.404	1.1e-37
TAIR|locus:2092788	225	AT3G29070 [Arabidopsis thalian	0.851	0.84	0.367	2.9e-32
UNIPROTKB|F1S2Q3	219	TMED10 "Uncharacterized protei	0.842	0.853	0.351	2.4e-28
UNIPROTKB|F1NA76	219	TMED10 "Uncharacterized protei	0.846	0.858	0.357	3.9e-28

TAIR|locus:2201098 p24delta5 "p24 subfamily delta 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 137/191 (71%), Positives = 158/191 (82%)

Query:    33 EAIWLQIPSSG-TKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE 91
             EAIWL IP++G TKCVSEEI SNVVVLADYYV+DE +PE+ P VS+KVTSPYGNNLHH E
Sbjct:    26 EAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPENTPAVSSKVTSPYGNNLHHQE 85

Query:    92 NVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGV 151
             NVTHGQFAFTT EAGNY+ACFW+ S+       TLG+DW++G +AKDW+SVAKK+KIEGV
Sbjct:    86 NVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAAKDWDSVAKKEKIEGV 145

Query:   152 ELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWY 211
             EL L+RLE  V SI ENL ++K REAEMREVSE TNSRVAW SI+SLGVC+ V   Q+ Y
Sbjct:   146 ELQLRRLEGLVLSIRENLNYIKDREAEMREVSETTNSRVAWFSIMSLGVCVVVVGSQILY 205

Query:   212 LTRYFQKKKLI 222
             L RYF KKKLI
Sbjct:   206 LKRYFHKKKLI 216

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0030134 "ER to Golgi transport vesicle" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2012335 AT1G09580 [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 126/193 (65%), Positives = 156/193 (80%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHH 89
             PV EA+WL +P +GTKCVSEEI SNVVVLADY +I E H E  PT+S KVTSPYGNNLH+
Sbjct:    26 PVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIISEDH-EVMPTISVKVTSPYGNNLHN 84

Query:    90 NENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIE 149
              ENVTHGQFAFTT E+GNY+ACFW         + ++ +DWR G +AKDW S+AKK+KIE
Sbjct:    85 MENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIAAKDWASIAKKEKIE 144

Query:   150 GVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQL 209
             GVEL +++LE  V++IHEN+L+L++REA+MR +SE TNSRVAW SI+SLGVCIAVS  Q+
Sbjct:   145 GVELEIRKLEGAVEAIHENILYLRNREADMRTMSEKTNSRVAWYSIMSLGVCIAVSGFQV 204

Query:   210 WYLTRYFQKKKLI 222
              YL +YF+KKKLI
Sbjct:   205 LYLKQYFEKKKLI 217

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2206520 AT1G57620 [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 119/193 (61%), Positives = 151/193 (78%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHH 89
             P+ EA+WL +P +G+KCVSEEI SNV+VLADY VI E H   P TVS KVT+PYG  LHH
Sbjct:    21 PICEAVWLTVPHTGSKCVSEEIQSNVIVLADYLVISEEHSIFP-TVSVKVTAPYGTVLHH 79

Query:    90 NENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIE 149
              EN T+GQFAFTT E+G Y+ACF   +      D ++ +DW+ G +AKDW+S+A+K+KIE
Sbjct:    80 RENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDWKTGIAAKDWDSIARKEKIE 139

Query:   150 GVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQL 209
             GVEL  K+LE  V++IHENL++L++REAEMR VSE TNSRVAW SI+SLG+CI VS LQ+
Sbjct:   140 GVELEFKKLEGAVEAIHENLIYLRNREAEMRIVSEKTNSRVAWYSIMSLGICIVVSGLQI 199

Query:   210 WYLTRYFQKKKLI 222
              YL +YF+KKKLI
Sbjct:   200 LYLKQYFEKKKLI 212

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2200630 AT1G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 87/196 (44%), Positives = 130/196 (66%)

Query:    31 VTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVID--EAHPEHPPT--VSAKVTSPYGNN 86
             V++++  ++ S  TKC+SE+I SN + +  Y V++  EAHP  P +  +S +VTS YGN 
Sbjct:    21 VSQSLHFELQSGRTKCISEDIKSNSMTVGKYTVVNPNEAHPS-PQSHKISIRVTSSYGNT 79

Query:    87 LHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKD 146
              HH E+V  GQFAFT  E+G+YMAC+    +  +V   ++  DWR G  +K W SVAKK 
Sbjct:    80 YHHAEDVESGQFAFTAVESGDYMACYTAVDHKPEVT-LSIDFDWRTGVQSKSWSSVAKKS 138

Query:   147 KIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSS 206
             ++E +E  +KRL   V SIHE + +L+ RE EM+ ++  TNS++AWLS LSL VC+ V+ 
Sbjct:   139 QVEVMEFDVKRLIETVNSIHEEMFYLREREEEMQNLNRATNSKMAWLSFLSLFVCLGVAG 198

Query:   207 LQLWYLTRYFQKKKLI 222
             +Q  +L  +F+KKK+I
Sbjct:   199 MQFVHLKTFFEKKKVI 214

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2014864 AT1G14010 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 82/197 (41%), Positives = 125/197 (63%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PT---VSAKVTSPYGN 85
             PVT +I  ++ S  TKC+SEEI++N + +  Y +I+  H +HP P+   V+ +VTSP G 
Sbjct:    18 PVTLSIRYELLSGHTKCISEEIHANAMTIGKYSIINP-HEDHPLPSSHKVTVRVTSPQGT 76

Query:    86 NLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKK 145
               H ++ V  GQF+F   E G+Y++CF    +  +     +  DWR G   KDW +VAKK
Sbjct:    77 AYHESDGVESGQFSFVAVETGDYISCFSAVDHKPETT-LIIDFDWRTGIHTKDWSNVAKK 135

Query:   146 DKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVS 205
              ++E +E  +K+L   V  IH+ + +L+ RE EM  ++  TNS++AWLS +SL VC++V+
Sbjct:   136 SQVETMEFEVKKLFETVNGIHDEMFYLRDREEEMHNLNIATNSKMAWLSFVSLAVCLSVA 195

Query:   206 SLQLWYLTRYFQKKKLI 222
              LQ W+L  +FQKKKLI
Sbjct:   196 GLQFWHLKTFFQKKKLI 212

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2007196 AT1G69460 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 82/197 (41%), Positives = 125/197 (63%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH--PPT--VSAKVTSPYGN 85
             P++ ++   + S  TKC++E+I SN + +  Y  ID  H     P T  +S KVTS  GN
Sbjct:    20 PISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYN-IDNPHEGQALPQTHKISVKVTSNSGN 78

Query:    86 NLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKK 145
             N HH E V  GQFAF+  EAG+YMACF    +  +V+  ++  +W+ G  +K W +VAKK
Sbjct:    79 NYHHAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEVS-LSIDFEWKTGVQSKSWANVAKK 137

Query:   146 DKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVS 205
              ++E +E  +K L   V SIHE + +L+ RE EM++++  TN+++AWLS+LS  VCI V+
Sbjct:   138 SQVEVMEFEVKSLLDTVNSIHEEMYYLRDREEEMQDLNRSTNTKMAWLSVLSFFVCIGVA 197

Query:   206 SLQLWYLTRYFQKKKLI 222
              +Q  +L  +F+KKK+I
Sbjct:   198 GMQFLHLKTFFEKKKVI 214

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2056976 AT2G03290 [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 80/198 (40%), Positives = 123/198 (62%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PT---VSAKVTSPYGN 85
             P T ++  ++ SS TKC+ EEI+ N + +  Y++++     HP P    +  KV  P G 
Sbjct:    18 PRTLSMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDNHPLPDSHKIIVKVMPPQGK 77

Query:    86 NLHHNENVTHGQFAFTTTEAGNYMACFW-LGSNPQKVADATLGLDWRIGFSAKDWESVAK 144
             NLH  + V  GQF+FT  E G+Y+AC   +   P+     T+  DW+ G  +K+W +VAK
Sbjct:    78 NLHEADKVEAGQFSFTAYENGSYVACITAIDYKPETTL--TIDFDWKTGVHSKEWTNVAK 135

Query:   145 KDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAV 204
             K +++ +E  +K L   V SIHE + +L+ RE EM+E++  TNS++AWLS  SL VC++V
Sbjct:   136 KSQVDMMEYQVKTLMDTVISIHEEMYYLREREEEMQELNRSTNSKMAWLSFGSLVVCLSV 195

Query:   205 SSLQLWYLTRYFQKKKLI 222
             + LQ W+L  +F+KKKLI
Sbjct:   196 AGLQFWHLKTFFEKKKLI 213

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2092788 AT3G29070 [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 71/193 (36%), Positives = 119/193 (61%)

Query:    33 EAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH-PPT--VSAKVTSPYGNNLHH 89
             E++ L + S  TKC+S++I +N + +  Y +++     H PP+  +   V+SP G + HH
Sbjct:    34 ESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFVTVSSPKGKSHHH 93

Query:    90 NENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIE 149
              ENV  G+F FT  E G+YM CF +    +  A   +  +W+ G  AKDW ++AK+ +I 
Sbjct:    94 AENVESGKFVFTAEETGDYMTCF-VAPGYRPTAKFAVDFEWKSGVEAKDWTTIAKRGQIT 152

Query:   150 GVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQL 209
              +E+ +++L    ++IHE +  L  RE EM+E++  TNSR+A LS+LS  V ++V+ LQL
Sbjct:   153 MLEVEVRKLLDVTETIHEEMFQLIEREREMQELNRSTNSRMAALSLLSFVVTMSVAGLQL 212

Query:   210 WYLTRYFQKKKLI 222
              +L  + ++KKL+
Sbjct:   213 RHLKSFLERKKLL 225

GO:0005739 "mitochondrion" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1S2Q3 TMED10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 66/188 (35%), Positives = 112/188 (59%)

Query:    35 IWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVT 94
             I   +P +  KC+ EEI+ +++V   Y + D++     P    K+T   G+ L+  E+ T
Sbjct:    32 ISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGPRTHLKITDSAGHILYSKEDAT 91

Query:    95 HGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELH 154
              G+FAFTT +   +  CF       ++ D  + LD + G  AK++E +AK +K++ +E+ 
Sbjct:    92 KGKFAFTTEDYDMFEVCFE-SKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVE 150

Query:   155 LKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTR 214
             L+RLE   +SI  +  ++K RE EMR+ +E TN+RV + SI S+   I +++ Q++YL R
Sbjct:   151 LRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRR 210

Query:   215 YFQKKKLI 222
             +F+ KKLI
Sbjct:   211 FFKAKKLI 218

GO:0070765 "gamma-secretase complex" evidence=IEA

GO:0045055 "regulated secretory pathway" evidence=IEA

GO:0035964 "COPI-coated vesicle budding" evidence=IEA

GO:0034205 "beta-amyloid formation" evidence=IEA

GO:0030667 "secretory granule membrane" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NA76 TMED10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 68/190 (35%), Positives = 113/190 (59%)

Query:    35 IWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVT 94
             I  Q+P    KC+ EEI+ + +V  +Y +         P+ + K+T   G+ L+  E+ T
Sbjct:    29 ISFQLPGKARKCLREEIHRDTLVTGEYEIGAPPGSSSGPSANLKITDSAGHILYAKEDAT 88

Query:    95 HGQFAFTTTEAGNYMACFW--LGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVE 152
              G+FAFTT +   + ACF   L     ++ D  + LD + G  AK++E +AK +K++ +E
Sbjct:    89 KGKFAFTTEDYDMFEACFESKLPVGTGRMPDQLVILDMKHGVEAKNYEEIAKVEKLKPLE 148

Query:   153 LHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYL 212
             + L+RLE   +SI  +  ++K RE EMR+ +E TN+RV + SI S+   I +++ Q++YL
Sbjct:   149 VELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMCCLIGLATWQVFYL 208

Query:   213 TRYFQKKKLI 222
              R+F+ KKLI
Sbjct:   209 RRFFKAKKLI 218

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0030667 "secretory granule membrane" evidence=IEA

GO:0034205 "beta-amyloid formation" evidence=IEA

GO:0035964 "COPI-coated vesicle budding" evidence=IEA

GO:0045055 "regulated secretory pathway" evidence=IEA

GO:0070765 "gamma-secretase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28735	TMEDA_RABIT	No assigned EC number	0.3439	0.8468	0.8584	yes	no
P49755	TMEDA_HUMAN	No assigned EC number	0.3492	0.8468	0.8584	yes	no
Q5E971	TMEDA_BOVIN	No assigned EC number	0.3492	0.8468	0.8584	yes	no
Q5RE32	TMEDA_PONAB	No assigned EC number	0.3439	0.8468	0.8584	yes	no
Q63584	TMEDA_RAT	No assigned EC number	0.3439	0.8468	0.8584	yes	no
Q8RWM6	P24D5_ARATH	No assigned EC number	0.6796	0.9234	0.9490	yes	no
Q9D1D4	TMEDA_MOUSE	No assigned EC number	0.3439	0.8468	0.8584	yes	no
Q8SXY6	TMEDA_DROME	No assigned EC number	0.3160	0.8378	0.9029	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	2e-53

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score =  169 bits (430), Expect = 2e-53
 Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 12/187 (6%)

Query: 34  AIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSP--YGNNLHHNE 91
           A+  ++P+   +C  EE+    +V   Y VI   +      +   +T P   GN ++  E
Sbjct: 1   ALTFELPAGEKECFYEEVPKGTLVTGSYQVISGGNL----DIDFTITDPDGNGNVIYSKE 56

Query: 92  NVTH-GQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEG 150
           +    G+F+FT TE+G Y  CF   ++    +  T+  D ++G  AKD   +AKK+K++ 
Sbjct: 57  DRKSGGKFSFTATESGEYKFCFS--NSFSTFSSKTVSFDIKVGEEAKD---IAKKEKLDP 111

Query: 151 VELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLW 210
           +E  LK+LE Q+  I     +L+ REA  RE +E TNSRV W SI+ + V I VS LQ++
Sbjct: 112 LEEELKKLEDQLNDIKREQKYLREREARHRETNESTNSRVVWWSIIQILVLIGVSVLQVY 171

Query: 211 YLTRYFQ 217
           YL R+F+
Sbjct: 172 YLKRFFE 178

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
KOG1692	201	consensus Putative cargo transport protein EMP24 (	100.0
KOG1691	210	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1690	215	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1693	209	consensus emp24/gp25L/p24 family of membrane traff	100.0
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	100.0
KOG3287	236	consensus Membrane trafficking protein, emp24/gp25	100.0
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	94.85
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	93.11
PF04151	70	PPC: Bacterial pre-peptidase C-terminal domain; In	92.79
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	91.5
PRK02710	119	plastocyanin; Provisional	89.5
PF00630	101	Filamin: Filamin/ABP280 repeat; InterPro: IPR01786	87.15
PF13860	81	FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.	84.64
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	83.49
PF05753	181	TRAP_beta: Translocon-associated protein beta (TRA	82.64
PRK10378	375	inactive ferrous ion transporter periplasmic prote	82.4

>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-47  Score=291.92  Aligned_cols=198  Identities=25%  Similarity=0.439  Sum_probs=177.0

Q ss_pred             HHHHHHHHHHHhhhcccCeeeeEEEEEcCCCcceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec
Q 027560           13 VLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN   92 (222)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~l~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~   92 (222)
                      +.-++++||+++.     .+.+..+.+++.+++||+|++..|+.+.++|++.++   +.. ++++.|++|+|+++++.++
T Consensus         4 ~~~~~vll~~L~~-----~~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~g---g~~-~vd~~I~gP~~~~i~~~~~   74 (201)
T KOG1692|consen    4 LASVIVLLGLLFI-----SAAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDG---GFL-GVDVEITGPDGKIIHKGKR   74 (201)
T ss_pred             hhhHHHHHHHHHH-----HhhheeEEEccchhhhHhhhhccCCEEEEEEEEecC---Ccc-ceeEEEECCCCchhhhccc
Confidence            3445556666653     267788899999999999999999999999999975   334 9999999999999999998


Q ss_pred             cceeeEEEEeeccceeeeeeeeCCCCCCcccEEEEEEEEecccccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHH
Q 027560           93 VTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFL  172 (222)
Q Consensus        93 ~~~~~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~f~i~~g~~~~d~~~~a~~e~l~~l~~~l~~l~~~l~~I~~eq~~~  172 (222)
                      .+.|+|+|+++.+|.|++||+|+.+  +..++.|.|+++.|..... ++.++.+|.+++++.+.+|...+..++.||+|+
T Consensus        75 ~ssgk~tF~a~~~G~Y~fCF~N~~s--~mtpk~V~F~ihvg~~~~~-~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~  151 (201)
T KOG1692|consen   75 ESSGKYTFTAPKKGTYTFCFSNKMS--TMTPKTVMFTIHVGHAPQR-DDLAKDAHQNKLEEMIRELSEALTSVKHEQEYM  151 (201)
T ss_pred             ccCceEEEEecCCceEEEEecCCCC--CCCceEEEEEEEEeecccc-chhcccccccHHHHHHHHHHHHHHHhHHHHHHH
Confidence            8999999999999999999999875  4568899999999876543 346788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027560          173 KHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI  222 (222)
Q Consensus       173 ~~re~~~~~~~est~~rv~~~sil~i~vli~~~~~Qv~~lk~fF~~KklI  222 (222)
                      ..|+++||.++|+|++|+.|||++|.++||++++.|||||||||+.|+.+
T Consensus       152 ~~Rer~Hr~~nEntn~RVv~wsife~~vLi~~s~~QVyYLkRfFEvkrvv  201 (201)
T KOG1692|consen  152 EARERIHRNTNENTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFEVKRVV  201 (201)
T ss_pred             HHHHHHHHHhhhcccceeehHHHHHHHHHHHHHHHHHHHHHHhheeeecC
Confidence            99999999999999999999999999999999999999999999999864

>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-45  Score=286.23  Aligned_cols=192  Identities=53%  Similarity=0.876  Sum_probs=177.6

Q ss_pred             CeeeeEEEEEcCCCcceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeeccceee
Q 027560           30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYM  109 (222)
Q Consensus        30 ~~~~~l~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~  109 (222)
                      ..+.++.|+++++.++|+.|++.+|..+.|.|.+.++..+..+ .+++.|+||.|+.+++.++.++|+|+|++.++|.|.
T Consensus        18 ~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~~~-~~~~~Vts~~G~~~~~~env~~gqFaFta~e~~~y~   96 (210)
T KOG1691|consen   18 PLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDHSH-KLSVKVTSPYGNNLHSKENVTKGQFAFTAEESGMYE   96 (210)
T ss_pred             hhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCccc-eEEEEEEcCCCceeehhhccccceEEEEeccCCcEE
Confidence            4689999999999999999999999999999999876422223 899999999999999999999999999999999999


Q ss_pred             eeeeeCCCC-CCcccEEEEEEEEecccccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027560          110 ACFWLGSNP-QKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNS  188 (222)
Q Consensus       110 iCf~n~~~~-~~~~~~~v~f~i~~g~~~~d~~~~a~~e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~  188 (222)
                      +||.+.... .......|+|||..|.+++||+++||+++++++|-++++|.+.+..|.++.-|++.||+++|+++|+||+
T Consensus        97 ~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNs  176 (210)
T KOG1691|consen   97 ACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNS  176 (210)
T ss_pred             EEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            999993321 1234579999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027560          189 RVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI  222 (222)
Q Consensus       189 rv~~~sil~i~vli~~~~~Qv~~lk~fF~~KklI  222 (222)
                      ||.|+|++.++++++++.||++|||+||++||+|
T Consensus       177 rv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKKLI  210 (210)
T KOG1691|consen  177 RVAWFSILSLVVLLSVAGWQVLYLKRFFQKKKLI  210 (210)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999999999999999998

>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-45  Score=282.70  Aligned_cols=191  Identities=25%  Similarity=0.382  Sum_probs=170.0

Q ss_pred             cCeeeeEEEEEcCCCcceeeEEcCCCcEEEEEEEEe--eC---CCC--CCCCeeEEEEECCCCC--eEEeeeccceeeEE
Q 027560           29 VPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVI--DE---AHP--EHPPTVSAKVTSPYGN--NLHHNENVTHGQFA   99 (222)
Q Consensus        29 ~~~~~~l~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~--~~---~~~--~~~~~i~v~v~~p~g~--~v~~~~~~~~~~f~   99 (222)
                      +..+.|++|++..++++||++++|+|+.+.|+|.+.  ++   +++  ++. ++.+.|.+|.++  +|.+++..++|+|+
T Consensus        15 ~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~-gm~VeV~e~fdnnh~Vl~q~~ss~G~ft   93 (215)
T KOG1690|consen   15 ATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNI-GMHVEVKETFDNNHVVLSQQYSSEGDFT   93 (215)
T ss_pred             HhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCc-eEEEEeecCCCCceEEEeecCCCCCceE
Confidence            347899999999999999999999999999999985  21   111  223 899999999988  89999999999999


Q ss_pred             EEeeccceeeeeeeeCCC-CCCcccEEEEEEEEecccccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027560          100 FTTTEAGNYMACFWLGSN-PQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAE  178 (222)
Q Consensus       100 f~~~~~G~y~iCf~n~~~-~~~~~~~~v~f~i~~g~~~~d~~~~a~~e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~  178 (222)
                      |++..+|+|+||+.+..+ ++.+...+|.+++++|.++.++.+.  ++..+.++.++..|++++..|+.||+++|.||++
T Consensus        94 Fta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a~~--ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R~RE~~  171 (215)
T KOG1690|consen   94 FTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDAQI--KETDKLLEGRVRQLNSRLESIRKEQNLQREREET  171 (215)
T ss_pred             EEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhhhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999987554 3445678999999999998877654  4566788899999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027560          179 MREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI  222 (222)
Q Consensus       179 ~~~~~est~~rv~~~sil~i~vli~~~~~Qv~~lk~fF~~KklI  222 (222)
                      +|++.||+|+|++||+++|+++|+++|+||+.+||+||.+||++
T Consensus       172 FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqKlv  215 (215)
T KOG1690|consen  172 FRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQKLV  215 (215)
T ss_pred             HHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999985

>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-39  Score=249.88  Aligned_cols=184  Identities=20%  Similarity=0.387  Sum_probs=162.6

Q ss_pred             eeeeEEEEEcCCCcceeeEEcCCCc-EEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeeccceee
Q 027560           31 VTEAIWLQIPSSGTKCVSEEINSNV-VVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYM  109 (222)
Q Consensus        31 ~~~~l~f~i~~~~~~Cf~e~v~~~~-~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~  109 (222)
                      ++..++|++|++.++|||+++++++ .+...|+|+.|   ++. +|++.|++|+|+++++..++..+.|.|++...|+|+
T Consensus        20 ~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tG---G~f-DVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y~   95 (209)
T KOG1693|consen   20 EASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTG---GHF-DVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEYT   95 (209)
T ss_pred             hcccEEEEcCCcchhheeeecccCCceEEEEEEEEeC---Cce-eeEEEEECCCCCEEeeccccccccEEEEEecceEEE
Confidence            3789999999999999999999975 59999999976   556 999999999999999999999999999999999999


Q ss_pred             eeeeeCCCCCCcccEEEEEEEEecccccchhhh-hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027560          110 ACFWLGSNPQKVADATLGLDWRIGFSAKDWESV-AKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNS  188 (222)
Q Consensus       110 iCf~n~~~~~~~~~~~v~f~i~~g~~~~d~~~~-a~~e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~  188 (222)
                      +||+|..+.  ..++.+.++++.|.+..-.... ++....+.++..+..+.+.|+.|.+.|.|.|.||.|.+.+++|+++
T Consensus        96 fCFsN~fst--f~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~tv~st~~  173 (209)
T KOG1693|consen   96 FCFSNEFST--FSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRSTVESTNS  173 (209)
T ss_pred             EEecCcccc--ccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhcccc
Confidence            999997653  4677888888888543322222 2233467899999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027560          189 RVAWLSILSLGVCIAVSSLQLWYLTRYFQKKK  220 (222)
Q Consensus       189 rv~~~sil~i~vli~~~~~Qv~~lk~fF~~Kk  220 (222)
                      |++|||++++++++++++.|+..||.||+.|+
T Consensus       174 Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r  205 (209)
T KOG1693|consen  174 RVTWWSLLEIIAVVVISIAQVFILKFFFTDRR  205 (209)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999876

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=100.00  E-value=1.8e-39  Score=255.76  Aligned_cols=180  Identities=30%  Similarity=0.563  Sum_probs=5.6

Q ss_pred             eEEEEEcCCCcceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEE--CCCCCeEEeeecc-ceeeEEEEeeccceeee
Q 027560           34 AIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVT--SPYGNNLHHNENV-THGQFAFTTTEAGNYMA  110 (222)
Q Consensus        34 ~l~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~--~p~g~~v~~~~~~-~~~~f~f~~~~~G~y~i  110 (222)
                      |++|+|+||+++||++++++|+.+.++|.+.+++  ++. ++++.|+  +|+|+.++.+... ++|+|+|+++++|+|++
T Consensus         1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~--~~~-~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~i   77 (183)
T PF01105_consen    1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGG--GAY-DVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQI   77 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeecc--ccc-eEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEE
Confidence            6899999999999999999999999999998753  234 9999999  5556888888555 45799999999999999


Q ss_pred             eeeeCCCCCCcccEEEEEEEEecccccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027560          111 CFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRV  190 (222)
Q Consensus       111 Cf~n~~~~~~~~~~~v~f~i~~g~~~~d~~~~a~~e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~rv  190 (222)
                      ||+|+.+.... .+.|+|+++.|.++.|+++.++++++++++.+|+++...++.|+++|+|++.|+.+|+++++++++|+
T Consensus        78 Cf~n~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~~i  156 (183)
T PF01105_consen   78 CFDNSSSSFSP-SKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNSRI  156 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEcCCCCccc-cEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheE
Confidence            99998764211 38999999998776677788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 027560          191 AWLSILSLGVCIAVSSLQLWYLTRYFQ  217 (222)
Q Consensus       191 ~~~sil~i~vli~~~~~Qv~~lk~fF~  217 (222)
                      +||+++++++++++++||+++||+||+
T Consensus       157 ~~~si~~~~vli~~~~~Qv~~lk~~f~  183 (183)
T PF01105_consen  157 MWWSIIQIVVLILVSVWQVYYLKKFFK  183 (183)
T ss_dssp             ---------------------HHHHHH
T ss_pred             EhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999996

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-35  Score=228.03  Aligned_cols=184  Identities=21%  Similarity=0.346  Sum_probs=155.8

Q ss_pred             eeeEEEEEcCCCcceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeeccceeeee
Q 027560           32 TEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMAC  111 (222)
Q Consensus        32 ~~~l~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~iC  111 (222)
                      ...+++.||||+++|||+.++++..+...|+|++| +|+ . +|++.+.+|.|+++.....+.+|.+++.+.++|.|++|
T Consensus        33 d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G-~GD-l-~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~C  109 (236)
T KOG3287|consen   33 DYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDG-AGD-L-DIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVC  109 (236)
T ss_pred             ccceEEEecCCCceeeeeeccCCeEEEEEEEEEec-CCc-c-ceeeEEeCCCccEEeecccccCceeEeeccCCcceEEE
Confidence            45678999999999999999999999999999987 433 4 99999999999999998889999999999999999999


Q ss_pred             eeeCCCCCCcccEEEEEEE--Ee-cccc---cchhhhhhc-----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027560          112 FWLGSNPQKVADATLGLDW--RI-GFSA---KDWESVAKK-----DKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMR  180 (222)
Q Consensus       112 f~n~~~~~~~~~~~v~f~i--~~-g~~~---~d~~~~a~~-----e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~  180 (222)
                      |+|+.+..+.  +.|.|++  +. |+..   .+|++-++.     -.+++++..+..+...+..+...|..+|.||.|+|
T Consensus       110 fDNsFS~fs~--K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr  187 (236)
T KOG3287|consen  110 FDNSFSTFSR--KLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDR  187 (236)
T ss_pred             EcCccccccc--eEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            9999876544  4555555  21 3322   223222221     24667888888888888888999999999999999


Q ss_pred             HHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027560          181 EVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQKKK  220 (222)
Q Consensus       181 ~~~est~~rv~~~sil~i~vli~~~~~Qv~~lk~fF~~Kk  220 (222)
                      .+.+|+..||.|||.+|+.+||+++..||++|||+|+.|+
T Consensus       188 ~L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~  227 (236)
T KOG3287|consen  188 NLQESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKS  227 (236)
T ss_pred             HHHhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCC
Confidence            9999999999999999999999999999999999999875

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=94.85  E-value=0.49  Score=32.78  Aligned_cols=43  Identities=26%  Similarity=0.517  Sum_probs=31.4

Q ss_pred             eeEEEEECCCCCeEEee-eccceee--EEEEeeccceeeeeeeeCC
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHGQ--FAFTTTEAGNYMACFWLGS  116 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~~--f~f~~~~~G~y~iCf~n~~  116 (222)
                      .+.+.|.+|+|+.+.-+ .+..+|.  .+|++...|.|.+.+.-..
T Consensus        33 ~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g   78 (93)
T smart00557       33 ELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG   78 (93)
T ss_pred             cEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            89999999999654332 3334454  4788889999999987544

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=93.11  E-value=0.36  Score=34.14  Aligned_cols=71  Identities=10%  Similarity=0.087  Sum_probs=27.7

Q ss_pred             eeeEEEEEcCCCccee--eEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeeccceee
Q 027560           32 TEAIWLQIPSSGTKCV--SEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYM  109 (222)
Q Consensus        32 ~~~l~f~i~~~~~~Cf--~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~  109 (222)
                      .+.+.+.+.++  .|-  ...+++|+.+.+.+.-.+.     . .-++.+.+  ...-..-..-....+.|++.++|+|.
T Consensus        20 ~~~v~I~~~~~--~f~P~~i~v~~G~~v~l~~~N~~~-----~-~h~~~i~~--~~~~~~l~~g~~~~~~f~~~~~G~y~   89 (104)
T PF13473_consen   20 AQTVTITVTDF--GFSPSTITVKAGQPVTLTFTNNDS-----R-PHEFVIPD--LGISKVLPPGETATVTFTPLKPGEYE   89 (104)
T ss_dssp             ----------E--EEES-EEEEETTCEEEEEEEE-SS-----S--EEEEEGG--GTEEEEE-TT-EEEEEEEE-S-EEEE
T ss_pred             cccccccccCC--eEecCEEEEcCCCeEEEEEEECCC-----C-cEEEEECC--CceEEEECCCCEEEEEEcCCCCEEEE
Confidence            34445555433  222  3456677777766644321     1 33344333  11111111122457888889999999


Q ss_pred             e-ee
Q 027560          110 A-CF  112 (222)
Q Consensus       110 i-Cf  112 (222)
                      + |=
T Consensus        90 ~~C~   93 (104)
T PF13473_consen   90 FYCT   93 (104)
T ss_dssp             EB-S
T ss_pred             EEcC
Confidence            4 54

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.79  E-value=0.71  Score=30.07  Aligned_cols=61  Identities=16%  Similarity=0.206  Sum_probs=41.4

Q ss_pred             ceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecc-----ceeeEEEEeeccceeeeee
Q 027560           45 KCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENV-----THGQFAFTTTEAGNYMACF  112 (222)
Q Consensus        45 ~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~-----~~~~f~f~~~~~G~y~iCf  112 (222)
                      ..|..++++|+.+.+..  ...    .. +.++.+++++|..+......     ......|+++.+|.|.+=+
T Consensus         3 D~y~f~v~ag~~l~i~l--~~~----~~-d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V   68 (70)
T PF04151_consen    3 DYYSFTVPAGGTLTIDL--SGG----SG-DADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV   68 (70)
T ss_dssp             EEEEEEESTTEEEEEEE--CET----TS-SEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred             EEEEEEEcCCCEEEEEE--cCC----CC-CeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence            45777888988766553  322    12 67799999998776653222     2355778889999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=91.50  E-value=3.4  Score=28.62  Aligned_cols=62  Identities=19%  Similarity=0.229  Sum_probs=39.8

Q ss_pred             CCcEEEEEEEEeeCC--C--CCCCCeeEEEEECCCCCeEEeeec-c--ceeeEEEEe--e---ccceeeeeeeeC
Q 027560           53 SNVVVLADYYVIDEA--H--PEHPPTVSAKVTSPYGNNLHHNEN-V--THGQFAFTT--T---EAGNYMACFWLG  115 (222)
Q Consensus        53 ~~~~i~~~y~v~~~~--~--~~~~~~i~v~v~~p~g~~v~~~~~-~--~~~~f~f~~--~---~~G~y~iCf~n~  115 (222)
                      .|+.+.+.--+.+.+  .  +.. .++.+.|.||+|+.+.++.. .  ..|.+++..  +   ..|.|++=+...
T Consensus        13 PGetV~~~~~~~~~~~~~~~~~~-~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~   86 (99)
T PF01835_consen   13 PGETVHFRAIVRDLDNDFKPPAN-SPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD   86 (99)
T ss_dssp             TTSEEEEEEEEEEECTTCSCESS-EEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred             CCCEEEEEEEEeccccccccccC-CceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence            477777776655433  1  122 39999999999999987665 2  345554433  2   359999888764

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>PRK02710 plastocyanin; Provisional

Probab=89.50  E-value=6.4  Score=28.57  Aligned_cols=93  Identities=13%  Similarity=0.078  Sum_probs=45.9

Q ss_pred             hhHHHHHHHHHHHhhhcccCeeeeEEEEEcCCC-cceee---EEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCe
Q 027560           11 ATVLPLILLLCLACYICVVPVTEAIWLQIPSSG-TKCVS---EEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNN   86 (222)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~l~f~i~~~~-~~Cf~---e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~   86 (222)
                      ..+++.|++++.++..+....+...++.+.... .-.|.   .+++.|+.|.  +...+.   ... ++.+  .+..+ .
T Consensus         7 ~~~~~~~~~~~~~~~~~~~a~a~~~~V~~~~~~~~~~F~P~~i~v~~Gd~V~--~~N~~~---~~H-~v~~--~~~~~-~   77 (119)
T PRK02710          7 SIAAALVAVVSSFGLGVSSASAETVEVKMGSDAGMLAFEPSTLTIKAGDTVK--WVNNKL---APH-NAVF--DGAKE-L   77 (119)
T ss_pred             HHHHHHHHHHHHHHhcccccccceEEEEEccCCCeeEEeCCEEEEcCCCEEE--EEECCC---CCc-eEEe--cCCcc-c
Confidence            344444555555554455556677778776432 34555   3567788654  432221   111 3332  22211 1


Q ss_pred             EEee-eccceeeEEEEeeccceee-eee
Q 027560           87 LHHN-ENVTHGQFAFTTTEAGNYM-ACF  112 (222)
Q Consensus        87 v~~~-~~~~~~~f~f~~~~~G~y~-iCf  112 (222)
                      .+.. .-.+...++++...+|.|. +|-
T Consensus        78 ~~~~~~~~pg~t~~~tF~~~G~y~y~C~  105 (119)
T PRK02710         78 SHKDLAFAPGESWEETFSEAGTYTYYCE  105 (119)
T ss_pred             cccccccCCCCEEEEEecCCEEEEEEcC
Confidence            1111 1122335666666799998 564

>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod

Probab=87.15  E-value=3.5  Score=28.47  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=29.6

Q ss_pred             eeEEEEECCCCC----eE-Eeeeccceee--EEEEeeccceeeeeeeeCC
Q 027560           74 TVSAKVTSPYGN----NL-HHNENVTHGQ--FAFTTTEAGNYMACFWLGS  116 (222)
Q Consensus        74 ~i~v~v~~p~g~----~v-~~~~~~~~~~--f~f~~~~~G~y~iCf~n~~  116 (222)
                      .+.+.|.+|++.    .+ ..-.+..+|.  .+|+++..|.|++.+.-..
T Consensus        43 ~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~g   92 (101)
T PF00630_consen   43 EFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKING   92 (101)
T ss_dssp             EEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEESS
T ss_pred             eeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEECC
Confidence            788999999986    32 2222334554  4778888999999886543

Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....

>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A

Probab=84.64  E-value=8  Score=25.92  Aligned_cols=32  Identities=9%  Similarity=0.155  Sum_probs=23.5

Q ss_pred             cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee
Q 027560           55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE   91 (222)
Q Consensus        55 ~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~   91 (222)
                      ....+.|.+..+    . ..+.+.|+|.+|++|++..
T Consensus        12 ~~~~~~~~l~~~----a-~~v~v~I~d~~G~~V~t~~   43 (81)
T PF13860_consen   12 TKGSIEYTLPED----A-DNVTVTIYDSNGQVVRTIS   43 (81)
T ss_dssp             CEEEEEEEECSS----C-EEEEEEEEETTS-EEEEEE
T ss_pred             EEEEEEEeCCCc----c-cEEEEEEEcCCCCEEEEEE
Confidence            477888877532    2 2899999999999997753

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=83.49  E-value=5.5  Score=28.25  Aligned_cols=57  Identities=11%  Similarity=0.096  Sum_probs=36.4

Q ss_pred             CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccc--eeeEEEEe--eccceeeeeeeeCCC
Q 027560           54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVT--HGQFAFTT--TEAGNYMACFWLGSN  117 (222)
Q Consensus        54 ~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~--~~~f~f~~--~~~G~y~iCf~n~~~  117 (222)
                      |..+.+.|...      . .++.+.|.|.+|+++++..-..  ....++..  ...|.|.+=+.+...
T Consensus        36 ~~~l~I~F~~~------~-~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g   96 (106)
T PF11589_consen   36 GNNLSIEFESP------I-GDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG   96 (106)
T ss_dssp             TTEEEEEESS---------SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred             CCEEEEEEcCC------C-CCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence            56677666321      1 3899999999999999875333  22355555  468999999988654

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins

Probab=82.64  E-value=17  Score=28.67  Aligned_cols=30  Identities=13%  Similarity=0.164  Sum_probs=21.9

Q ss_pred             EEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEEC
Q 027560           49 EEINSNVVVLADYYVIDEAHPEHPPTVSAKVTS   81 (222)
Q Consensus        49 e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~   81 (222)
                      ..+.+|..+.+.|.+...+  +. .-.++.+.|
T Consensus        32 ~~~v~g~~v~V~~~iyN~G--~~-~A~dV~l~D   61 (181)
T PF05753_consen   32 KYLVEGEDVTVTYTIYNVG--SS-AAYDVKLTD   61 (181)
T ss_pred             ccccCCcEEEEEEEEEECC--CC-eEEEEEEEC
Confidence            4556699999999997542  22 377888888

The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional

Probab=82.40  E-value=8.2  Score=34.00  Aligned_cols=69  Identities=10%  Similarity=0.300  Sum_probs=36.7

Q ss_pred             eeeEEEEEcCCCcceeeE--EcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccc---eeeEEEEeeccc
Q 027560           32 TEAIWLQIPSSGTKCVSE--EINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVT---HGQFAFTTTEAG  106 (222)
Q Consensus        32 ~~~l~f~i~~~~~~Cf~e--~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~---~~~f~f~~~~~G  106 (222)
                      ...+.+.+.++  .|--.  .++.|.   ..|.|...+   .. ...+.+.++ +.++-+.+...   .+.+.++. ++|
T Consensus        29 ~~~v~Vti~d~--~c~p~~~tVpAG~---~~f~V~N~~---~~-~~Efe~~~~-~~vv~e~EnIaPG~s~~l~~~L-~pG   97 (375)
T PRK10378         29 IPQVKVTVNDK--QCEPMTLTVNAGK---TQFIIQNHS---QK-ALEWEILKG-VMVVEERENIAPGFSQKMTANL-QPG   97 (375)
T ss_pred             CCceEEEEECC--ccccCceeeCCCC---EEEEEEeCC---CC-cceEEeecc-ccccccccccCCCCceEEEEec-CCc
Confidence            34566777744  56554  567785   445555331   12 556666642 23333333332   23454433 699


Q ss_pred             eeee-e
Q 027560          107 NYMA-C  111 (222)
Q Consensus       107 ~y~i-C  111 (222)
                      .|.+ |
T Consensus        98 tY~~~C  103 (375)
T PRK10378         98 EYDMTC  103 (375)
T ss_pred             eEEeec
Confidence            9997 8

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	95.58
3rgh_A	100	Filamin-A; cell adhesion, cytoskeleton-complex, di	93.47
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	93.46
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	93.43
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	93.11
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	92.91
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	92.5
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	92.39
2e9j_A	119	Filamin-B; beta-sandwich, immunoglobulin-like fold	92.16
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	91.46
2eea_A	115	Filamin-B; beta-sandwich, immunoglobulin-like fold	91.27
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	91.27
2dia_A	113	Filamin-B; beta-sandwich, immunoglobulin-like fold	90.87
2nqc_A	138	Filamin-C; immunoglobulin, metal binding, immune s	90.84
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	90.76
2bp3_A	97	Filamin A; structural protein, cytoskeleton/comple	90.73
1v05_A	96	Filamin C; actin-binding protein, immunoglobulin;	90.55
2k9u_A	119	Gamma filamin; cytoskeletal complex, alternative s	90.41
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	90.25
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	89.74
2w0p_A	94	Filamin-A; alternative splicing, cytoskeleton/comp	88.54
2dmc_A	116	Filamin-B; beta-sandwich, immunoglobulin-like fold	87.08
2ds4_A	113	Tripartite motif protein 45; beta-sandwich, immuno	86.82
2di8_A	111	Filamin-B; beta-sandwich, immunoglobulin-like fold	86.69
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	86.47
2eec_A	125	Filamin-B; beta-sandwich, immunoglobulin-like fold	85.96
2dic_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	85.82
4g9s_B	111	Inhibitor of G-type lysozyme, goose-type lysozyme;	85.68
2d7o_A	111	Filamin-C; beta-sandwich, immunoglobulin-like fold	85.61
2k7p_A	188	Filamin-A; IG-like, ABP-280, actin binding protein	83.57
2dib_A	128	Filamin-B; beta-sandwich, immunoglobulin-like fold	81.9
3sd2_A	101	Putative member of DUF3244 protein family; immunog	80.85
1qfh_A	212	Protein (gelation factor); actin binding protein,	80.06

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=95.58  E-value=0.13  Score=44.17  Aligned_cols=88  Identities=15%  Similarity=0.126  Sum_probs=56.6

Q ss_pred             EEEEcCCCcceeeEEcC-CCcEEEEEEEEeeCCCCCCCCeeEEEEE-C----CC---CC--eEEeeecc----ceeeEEE
Q 027560           36 WLQIPSSGTKCVSEEIN-SNVVVLADYYVIDEAHPEHPPTVSAKVT-S----PY---GN--NLHHNENV----THGQFAF  100 (222)
Q Consensus        36 ~f~i~~~~~~Cf~e~v~-~~~~i~~~y~v~~~~~~~~~~~i~v~v~-~----p~---g~--~v~~~~~~----~~~~f~f  100 (222)
                      ++.|++|+....-..+. +|+.+.=.|.+.+      . +|.|.|+ .    ++   |.  .+....+.    .-..=++
T Consensus       281 ~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~------~-DI~F~v~~~~~~~~~~~~~~~~~v~p~~r~~~~~~~~~G~~  353 (403)
T 1olm_A          281 SVQISRGSSHQVEYEILFPGCVLRWQFMSDG------A-DVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTL  353 (403)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEESS------S-CEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEEE
T ss_pred             EEEEcCCCEEEEEEEEcCCCCEEEEEEEecC------C-cEEEEEEEecccccccCCCcceEEeeeeeecCccccccCEE
Confidence            48889999999988887 5888887777732      1 7777776 1    11   11  22222111    0112346


Q ss_pred             EeeccceeeeeeeeCCCCCCcccEEEEEEEEe
Q 027560          101 TTTEAGNYMACFWLGSNPQKVADATLGLDWRI  132 (222)
Q Consensus       101 ~~~~~G~y~iCf~n~~~~~~~~~~~v~f~i~~  132 (222)
                      .+.++|.|.++|+|+.++..  .+++.+.+.+
T Consensus       354 ~~~~~G~y~l~fdNs~S~~~--~k~l~y~v~v  383 (403)
T 1olm_A          354 TCSDPGIYVLRFDNTYSFIH--AKKVNFTVEV  383 (403)
T ss_dssp             ECCSCEEEEEEEECTTCCCC--SEEEEEEEEE
T ss_pred             EcCCCeEEEEEEecccccee--ceEEEEEEEE
Confidence            78999999999999987643  3556665554

>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0

Probab=93.47  E-value=0.78  Score=31.26  Aligned_cols=43  Identities=14%  Similarity=0.248  Sum_probs=29.7

Q ss_pred             eeEEEEECCCCCeEEee-eccceee--EEEEeeccceeeeeeeeCC
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHGQ--FAFTTTEAGNYMACFWLGS  116 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~~--f~f~~~~~G~y~iCf~n~~  116 (222)
                      .+.+.|.+|+|..+.-. .+..+|.  .+|+++..|.|.+.+.-..
T Consensus        40 ~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~~~g   85 (100)
T 3rgh_A           40 ELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKYGG   85 (100)
T ss_dssp             CEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEEETT
T ss_pred             eEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            89999999998654322 2333454  5778888999998885443

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=93.46  E-value=0.4  Score=33.19  Aligned_cols=66  Identities=15%  Similarity=0.189  Sum_probs=39.6

Q ss_pred             EEEEeeCCCCCCCCeeEEEEECCCCCeEEee-eccceeeE--EEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           60 DYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN-ENVTHGQF--AFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        60 ~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~-~~~~~~~f--~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .|.+...+.++  ..+.+.|.+|+|..+.-. .+..+|.|  +|++.+.|.|.+.+.-...+-.+.+..+.
T Consensus        32 ~F~V~~~~aG~--~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~V~gSPF~v~  100 (108)
T 2dj4_A           32 SFTVDSSKAGL--APLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFKVK  100 (108)
T ss_dssp             EEEEECTTTCS--CCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESSSBCTTCSEEEE
T ss_pred             EEEEEECCCCC--ceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEECCEECCCCCEEEE
Confidence            44444333333  289999999999654322 22335544  67778899999999765443223444443

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=93.43  E-value=0.26  Score=33.42  Aligned_cols=54  Identities=17%  Similarity=0.188  Sum_probs=36.4

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      ++.+.|.+|+|..+.-. .+..+|  ..+|++++.|.|.+++.-...+-.+.+..+.
T Consensus        23 ~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~~I~GSPF~v~   79 (93)
T 2d7n_A           23 ELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFY   79 (93)
T ss_dssp             CEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEEE
T ss_pred             CEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECCEeCCCCCeEEE
Confidence            89999999999865321 223345  4577889999999999765544333444444

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=93.11  E-value=0.75  Score=32.14  Aligned_cols=66  Identities=12%  Similarity=0.247  Sum_probs=40.1

Q ss_pred             EEEEeeCCCCCCCCeeEEEEECCCCCeEEee-eccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           60 DYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN-ENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        60 ~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~-~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .|.+...+.++  ..+.+.|.+|+|..+... .+..+|.  .+|++.+.|.|.+.+.-...+-...+..+.
T Consensus        33 ~F~V~~~daG~--~~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~I~gSPF~v~  101 (115)
T 2d7m_A           33 EFTIDARDAGE--GLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIH  101 (115)
T ss_dssp             EEEEEESSSCS--SCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             EEEEEECCCCC--CEEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEECCEECCCCCEEEE
Confidence            45444333333  289999999998654222 2233554  467888999999999765543233444444

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=92.91  E-value=0.97  Score=32.17  Aligned_cols=55  Identities=18%  Similarity=0.288  Sum_probs=36.0

Q ss_pred             eeEEEEECCCCCeEEee-eccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEEE
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLGL  128 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~f  128 (222)
                      .+.+.|.+|+|..+.-+ .+..+|.  .+|++++.|.|++.+.-...+-.+.+..+..
T Consensus        44 ~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~v  101 (124)
T 2dmb_A           44 KVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTVMA  101 (124)
T ss_dssp             CEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSCBCTTCSEEEEE
T ss_pred             cEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECCEECCCCCeEEEE
Confidence            89999999998654322 2223454  5788899999999997654432234444443

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=92.50  E-value=0.13  Score=36.39  Aligned_cols=70  Identities=11%  Similarity=0.060  Sum_probs=50.1

Q ss_pred             EEcCCCcceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCe---EEeeeccceeeEEEEeeccceeeeeeee
Q 027560           38 QIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNN---LHHNENVTHGQFAFTTTEAGNYMACFWL  114 (222)
Q Consensus        38 ~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~---v~~~~~~~~~~f~f~~~~~G~y~iCf~n  114 (222)
                      .|.+++...+...+.+|+.+.+..  ...     . .+.+.|.+|+|+.   ++..+....+.++-+.+.+|.|++=+..
T Consensus        23 ~I~g~~~~~Y~~~a~aGQ~l~V~l--s~~-----~-~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~~   94 (114)
T 4dzg_A           23 SFTGYDTIHYTLVAXAGQTMTVXI--GGS-----S-NANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVYQ   94 (114)
T ss_dssp             CCBTTCCEEEECCC-CCCEEEC-C--EES-----T-TCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEEC
T ss_pred             EecCCCceEEEEEecCCCEEEEEe--CCC-----C-cEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEEe
Confidence            578889999999999999888776  221     1 6788899999874   3433323345888899999999999976


Q ss_pred             C
Q 027560          115 G  115 (222)
Q Consensus       115 ~  115 (222)
                      .
T Consensus        95 ~   95 (114)
T 4dzg_A           95 M   95 (114)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.39  E-value=0.85  Score=31.30  Aligned_cols=53  Identities=15%  Similarity=0.249  Sum_probs=35.7

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|++..+ +-.+..+|  ..+|++..+|.|.+.+.-...+-.+.+..+.
T Consensus        43 ~l~v~v~~p~~~~v-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~   97 (105)
T 2ee6_A           43 GLSIAVEGPSKAEI-TFDDHKNGSCGVSYIAQEPGNYEVSIKFNDEHIPESPYLVP   97 (105)
T ss_dssp             CEEEEEESSSCEEE-EECCCCSSCCCEEEEESSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             cEEEEEECCCCCEE-EEEECCCCEEEEEEEECCCceEEEEEEECCEECCCcCEEEE
Confidence            88999999998655 33333455  5688899999999999754433223444443

>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.16  E-value=0.72  Score=32.47  Aligned_cols=66  Identities=14%  Similarity=0.250  Sum_probs=39.7

Q ss_pred             EEEEeeCCCCCCCCeeEEEEECCCCCeEEee-eccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           60 DYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN-ENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        60 ~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~-~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .|.+...+.|.  ..+.+.|.+|+|..+.-. .+..+|.  .+|++.+.|.|.+.+.-...+-.+.+..+.
T Consensus        43 ~F~V~~~daG~--~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~V~gSPF~v~  111 (119)
T 2e9j_A           43 DFAIDARDAGE--GLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGGDDIPLSPYRIR  111 (119)
T ss_dssp             EEEEEESSCCC--CCEECCEECTTCCCCCEEEEECCSSEEEEEECCCSCSEEEECCEESSCBCTTCSEEEE
T ss_pred             EEEEEECCCCC--CeEEEEEECCCCCEEEEEEEECCCCEEEEEEEeCCCEEEEEEEEECCEECCCCCEEEE
Confidence            45554333333  289999999998643221 2233554  467778899999999765443223444444

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=91.46  E-value=2  Score=28.27  Aligned_cols=43  Identities=14%  Similarity=0.176  Sum_probs=29.2

Q ss_pred             eeEEEEECCCCCeEEe-eecccee--eEEEEeeccceeeeeeeeCC
Q 027560           74 TVSAKVTSPYGNNLHH-NENVTHG--QFAFTTTEAGNYMACFWLGS  116 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~-~~~~~~~--~f~f~~~~~G~y~iCf~n~~  116 (222)
                      .+.+.|.+|+|..+.- -.+..+|  ..+|++++.|.|.+.+.-..
T Consensus        31 ~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   76 (89)
T 3cnk_A           31 MLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGH   76 (89)
T ss_dssp             CEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEETT
T ss_pred             cEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEECC
Confidence            7899999999863221 1222344  45678889999999987544

>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.27  E-value=2.6  Score=29.30  Aligned_cols=54  Identities=11%  Similarity=0.147  Sum_probs=35.7

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEEE
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLGL  128 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~f  128 (222)
                      .+.+.|.+|++..+ +-.+..+|  ..+|++.++|.|.+.+.-...+-.+.+..+.+
T Consensus        53 ~l~v~v~~p~~~~~-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~v  108 (115)
T 2eea_A           53 GLDLAIEGPSKAEI-SCIDNKDGTCTVTYLPTLPGDYSILVKYNDKHIPGSPFTAKI  108 (115)
T ss_dssp             CEEEEEESSSCCEE-CCBCCSSSEEEEEEECSSCSCEEEEEEESSSBCTTCSEEEEE
T ss_pred             ceEEEEECCCCceE-EEEECCCCEEEEEEEeCCCeeEEEEEEECCEECCCCCEEEEE
Confidence            88999999998544 22333455  45788889999999997554332334444443

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.27  E-value=0.76  Score=31.23  Aligned_cols=54  Identities=13%  Similarity=0.131  Sum_probs=35.7

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      ++.+.|.+|+|+.+.-. .+..+|  ..+|++.+.|.|++++.-...+-.+.+..+.
T Consensus        31 ~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~~I~GSPF~v~   87 (95)
T 2ee9_A           31 EITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGSHIPESPLQFY   87 (95)
T ss_dssp             SEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESSCBCTTCSEEEE
T ss_pred             CEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECCEECCCCCeEEE
Confidence            89999999999865321 222344  4567888999999999765543223444443

>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=90.87  E-value=1.5  Score=30.43  Aligned_cols=55  Identities=16%  Similarity=0.226  Sum_probs=35.2

Q ss_pred             eeEEEEECCCCCeEEee-eccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEEE
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLGL  128 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~f  128 (222)
                      .+.+.|.+|+|..+.-. .+..+|.  .+|++...|.|++.+.-...+-.+.+..+.+
T Consensus        43 ~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~V~gSPf~v~v  100 (113)
T 2dia_A           43 ALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGELVPHFPARVKV  100 (113)
T ss_dssp             CEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETTEECTTCSEEEEE
T ss_pred             cEEEEEECCCCCEeeEEEEECCCCEEEEEEEeCCCccEEEEEEECCEECCCCCEEEEE
Confidence            88999999988644322 2333554  5778889999999997544332234444443

>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A

Probab=90.84  E-value=3.5  Score=29.86  Aligned_cols=65  Identities=17%  Similarity=0.241  Sum_probs=39.7

Q ss_pred             EEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecccee-eEEEEeeccceeeeeeeeCC-CCCCcccEEEE
Q 027560           60 DYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHG-QFAFTTTEAGNYMACFWLGS-NPQKVADATLG  127 (222)
Q Consensus        60 ~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~-~f~f~~~~~G~y~iCf~n~~-~~~~~~~~~v~  127 (222)
                      .|.+...+.+.  ..+.+.|.+|++..+.-.+ ..+| ..+|++.++|.|.+-+.-.. .+-...+..+.
T Consensus        65 ~F~V~t~daG~--g~l~v~I~gPs~~~~~~~d-~~dGy~V~YtP~~~G~y~I~Vk~~g~~hI~GSPF~v~  131 (138)
T 2nqc_A           65 EFIVNTLNAGS--GALSVTIDGPSKVQLDCRE-CPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAK  131 (138)
T ss_dssp             EEEEECTTSCS--CCEEEEEESSSCCEEEEEE-ETTEEEEEEECCSCEEEEEEEEESSSCBCTTCSEEEE
T ss_pred             EEEEEEcCCCC--CcEEEEEECCCCCeeeEEE-CCCcEEEEEEcCCCEEEEEEEEECCcccCCCCCeEEE
Confidence            35554333322  2899999999987553322 2344 45778889999999887554 33223444444

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=90.76  E-value=1.6  Score=30.48  Aligned_cols=54  Identities=13%  Similarity=0.124  Sum_probs=35.3

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|+|..+.-. .+..+|  ..+|++++.|.|.+.+.-....-.+.+..+.
T Consensus        42 ~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g~~I~GSPF~v~   98 (112)
T 2d7p_A           42 VIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIR   98 (112)
T ss_dssp             CEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             CEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECCeEcCCCCEEEE
Confidence            89999999999754322 222344  4578889999999998765543223444443

>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A

Probab=90.73  E-value=2.3  Score=28.57  Aligned_cols=53  Identities=11%  Similarity=0.154  Sum_probs=34.0

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|++..+.-. +..+|  ..+|+++++|.|.+.+.-...+-.+.+..+.
T Consensus        38 ~l~v~v~~p~~~~~~v~-d~~dGty~v~Y~p~~~G~y~i~V~~~g~~I~gSPF~v~   92 (97)
T 2bp3_A           38 GLSLAIEGPSKAEISCT-DNQDGTCSVSYLPVLPGDYSILVKYNEQHVPGSPFTAR   92 (97)
T ss_dssp             EEEEEEEESSCCEEEEE-ECSSSEEEEEEECSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             cEEEEEECCCCCEEEEE-ECCCCEEEEEEEeCCCCcEEEEEEECCEECCCcCEEEE
Confidence            88889999987554322 23345  4577888999999999754432223444444

>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A

Probab=90.55  E-value=2.3  Score=28.47  Aligned_cols=43  Identities=16%  Similarity=0.234  Sum_probs=29.1

Q ss_pred             eeEEEEECCCCCeEE-eeeccceee--EEEEeeccceeeeeeeeCC
Q 027560           74 TVSAKVTSPYGNNLH-HNENVTHGQ--FAFTTTEAGNYMACFWLGS  116 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~-~~~~~~~~~--f~f~~~~~G~y~iCf~n~~  116 (222)
                      .+.+.|.+|+|..+. +-.+..+|.  .+|++++.|.|.+.+.-..
T Consensus        38 ~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   83 (96)
T 1v05_A           38 MMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             CEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             cEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEEEEECC
Confidence            889999999985321 112223454  4678888999999887544

>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}

Probab=90.41  E-value=3.3  Score=28.93  Aligned_cols=66  Identities=14%  Similarity=0.222  Sum_probs=40.2

Q ss_pred             EEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           59 ADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        59 ~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      ..|.+...+.+.  ..+.+.|.+|++-.+. -.+..+|  ..+|++.++|.|.+.+.-...+-.+.+..+.
T Consensus        37 ~~F~v~t~dag~--~~l~v~v~~p~~~~~~-v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~  104 (119)
T 2k9u_A           37 AEFSIWTREAGA--GGLSIAVEGPSKAEIA-FEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVVP  104 (119)
T ss_dssp             EEEEEECCSSCS--EEEEEEEESSSCCEEE-EECCSSSEEEEEEECCSSEEEEEEEEETSCBCSSCSEEEE
T ss_pred             EEEEEEECCCCC--CcEEEEEeCCCCCeEE-EEECCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEEE
Confidence            345454333322  3899999999884432 2333455  4578889999999999755443333454443

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=90.25  E-value=0.7  Score=31.76  Aligned_cols=54  Identities=19%  Similarity=0.154  Sum_probs=35.6

Q ss_pred             eeEEEEECCCCCeEEee-eccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|+|..+.-. .+..+|.  .+|++++.|.|.+.+.-...+-.+.+..+.
T Consensus        32 ~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g~~I~GSPF~v~   88 (102)
T 2dlg_A           32 DMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQHVTGSPFQFT   88 (102)
T ss_dssp             GCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSSSBCSSCSEEEE
T ss_pred             CEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECCEeCCCCCeEEE
Confidence            89999999999765332 2233454  467889999999999755443223444443

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=89.74  E-value=3.3  Score=27.88  Aligned_cols=63  Identities=17%  Similarity=0.196  Sum_probs=39.9

Q ss_pred             CCcEEEEEEEEeeCCC-CCCCCeeEEEEECCCCCeEEeeecc--ceeeE--EEEee---ccceeeeeeeeC
Q 027560           53 SNVVVLADYYVIDEAH-PEHPPTVSAKVTSPYGNNLHHNENV--THGQF--AFTTT---EAGNYMACFWLG  115 (222)
Q Consensus        53 ~~~~i~~~y~v~~~~~-~~~~~~i~v~v~~p~g~~v~~~~~~--~~~~f--~f~~~---~~G~y~iCf~n~  115 (222)
                      .|+.+.+..-+.+.+. +.....+.+.+.||+|+.+.++...  ..|.+  +|..+   ..|.|++-....
T Consensus        15 PGetV~~~~~~~~~~~~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~   85 (102)
T 2p9r_A           15 PGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKK   85 (102)
T ss_dssp             TTCEEEEEEEEECGGGCBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECT
T ss_pred             CCCEEEEEEEEECCCCcCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEEC
Confidence            4788887766654321 1222247899999999998775322  23444  44442   469999999754

>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A

Probab=88.54  E-value=3.9  Score=27.17  Aligned_cols=53  Identities=13%  Similarity=0.237  Sum_probs=33.8

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|++..+.-. +..+|  ..+|++.++|.|.+.+.-...+-.+++..+.
T Consensus        35 ~~~v~v~gp~~~~~~v~-d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~   89 (94)
T 2w0p_A           35 GLAIAVEGPSKAEISFE-DRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVP   89 (94)
T ss_dssp             CEEEEEEESSCCEEEEE-ECTTSCEEEEEECSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             cEEEEEECCCCCeEEEE-ECCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEEE
Confidence            78888889988554322 23345  4578888999999999754433223444443

>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=87.08  E-value=2.3  Score=29.76  Aligned_cols=54  Identities=13%  Similarity=0.241  Sum_probs=35.6

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|+|..+--. .+..+|  ..+|++.+.|.|.+.+.-...+-.+.+..+.
T Consensus        46 ~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~e~G~h~v~V~~~g~~I~GSPF~v~  102 (116)
T 2dmc_A           46 SLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGNHVANSPVSIM  102 (116)
T ss_dssp             TBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSSBCTTCSEEEE
T ss_pred             CEEEEEECCCCCEEeeEEEeCCCCeEEEEEEeCCCeeEEEEEEECCEECCCCCeEEE
Confidence            88999999999754221 222244  4578889999999999755443234454444

>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.82  E-value=3.6  Score=28.15  Aligned_cols=54  Identities=15%  Similarity=0.211  Sum_probs=33.8

Q ss_pred             eeEEEEECCCC--CeEE-eeeccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYG--NNLH-HNENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g--~~v~-~~~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|++  ..+. +-.+..+|.  .+|++.+.|.|.+++.-...+-.+.+..+.
T Consensus        50 ~~~v~i~~p~~~~~~~~~~v~D~~dGty~v~y~p~~~G~y~i~V~~~g~~i~gSPF~v~  108 (113)
T 2ds4_A           50 NVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPFTVT  108 (113)
T ss_dssp             CEEEEEEESSCSSCCCEEEEECCSSSEEEEEEECSSSEEEEEEEEESSCBCTTCSEEEE
T ss_pred             eEEEEEEecCCCCceeEEEEEECCCCEEEEEEEeCCCeEEEEEEEECCEECCCCCEEEE
Confidence            78999999886  2221 222334554  467888999999999765543333444444

>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=86.69  E-value=6  Score=27.26  Aligned_cols=54  Identities=17%  Similarity=0.288  Sum_probs=35.1

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEEE
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLGL  128 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~f  128 (222)
                      .+.+.|.+|++-.+.- .+..+|  ..+|+++++|.|.+.+.-...+-.+.+..+.+
T Consensus        43 ~l~v~v~gp~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~v   98 (111)
T 2di8_A           43 GISLAVEGPSKVDIQT-EDLEDGTCKVSYFPTVPGVYIVSTKFADEHVPGSPFTVKI   98 (111)
T ss_dssp             CEEEEEESSSCCCEEC-CBCTTSCEEEEECCCSCSEEEEEEEESSCBCTTCSEEEEE
T ss_pred             ceEEEEEcCCCceEEE-EECCCCEEEEEEEeCCCeEEEEEEEECCEECCCCCEEEEE
Confidence            7888899998754422 233455  45778889999999997554433344555443

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=86.47  E-value=2.9  Score=35.15  Aligned_cols=81  Identities=11%  Similarity=0.111  Sum_probs=49.9

Q ss_pred             eeeEEEEEcCCCcceeeEEcCC-----CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEe---eeccceee--EEEE
Q 027560           32 TEAIWLQIPSSGTKCVSEEINS-----NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHH---NENVTHGQ--FAFT  101 (222)
Q Consensus        32 ~~~l~f~i~~~~~~Cf~e~v~~-----~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~---~~~~~~~~--f~f~  101 (222)
                      ...+.-...|++-+|+.--+..     |..  ..|.|-..+.|.  ..+.+.|.+|+|..+.-   ..+..+|.  .+|+
T Consensus       245 ~~~l~~k~~pskv~a~GpGle~~g~~vg~p--~~F~Vdt~~AG~--g~l~v~V~~P~G~~~~~~v~~~~~~~gty~v~y~  320 (347)
T 4b7l_A          245 GAPLKPKLNPKKARAYGRGIEPTGNMVKQP--AKFTVDTISAGQ--GDVMVFVEDPEGNKEEAQVTPDSDKNKTYSVEYL  320 (347)
T ss_dssp             TCCCCCSCCGGGCEEESGGGSSSCCCTTSC--EEEEEECTTTCS--CCEEEEEECTTSCEEECEEEESSTTCSEEEEEEC
T ss_pred             cccccccccccceeEEeccccccCceeCCE--EEEEEEeCCCCC--CceEEEEECCCCCeecCEEEEEcCCCCEEEEEEE
Confidence            3444445666677777766643     343  345554333332  28999999999976432   22333454  4788


Q ss_pred             eeccceeeeeeeeCC
Q 027560          102 TTEAGNYMACFWLGS  116 (222)
Q Consensus       102 ~~~~G~y~iCf~n~~  116 (222)
                      ++++|.|.+-+.-..
T Consensus       321 P~~~G~~~I~V~~~g  335 (347)
T 4b7l_A          321 PKVTGLHKVTVLFAG  335 (347)
T ss_dssp             CCSSSEEEEEEEETT
T ss_pred             ECCCEeEEEEEEECC
Confidence            899999999886543

>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.96  E-value=7.3  Score=27.52  Aligned_cols=66  Identities=15%  Similarity=0.292  Sum_probs=40.2

Q ss_pred             EEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecccee-eEEEEeeccceeeeeeeeCC-CCCCcccEEEEE
Q 027560           60 DYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHG-QFAFTTTEAGNYMACFWLGS-NPQKVADATLGL  128 (222)
Q Consensus        60 ~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~-~f~f~~~~~G~y~iCf~n~~-~~~~~~~~~v~f  128 (222)
                      .|.+...+.+.  ..+.+.|.+|++..+--. +..+| ..+|++.++|.|.+.+.-.. .+-.+.+..+.+
T Consensus        41 ~F~v~t~daG~--~~l~v~i~gp~~~~~~~~-d~~dGy~V~Y~P~~~G~y~I~V~~~g~~hI~gSPF~v~v  108 (125)
T 2eec_A           41 EFFINTTRAGP--GTLSVTIEGPSKVKMDCQ-ETPEGYKVMYTPMAPGNYLISVKYGGPNHIVGSPFKAKV  108 (125)
T ss_dssp             EEEEECTTTCS--CCEEEEEESSSCCCCEEE-ECSSSEEEEECCSSCEEEEEEEEESSSCBCTTCSEEEEE
T ss_pred             EEEEEEcCCCC--CcEEEEEECCCCCcceeE-ECCCCEEEEEEcCCCeEEEEEEEECCcccCCCCCeEEEE
Confidence            35555433333  289999999998654322 23345 44677789999999987554 332334544443

>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=85.82  E-value=6.4  Score=26.75  Aligned_cols=53  Identities=11%  Similarity=0.186  Sum_probs=33.8

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|++..+.-.+ ..+|  ..+|++..+|.|.+.+.-...+-.+.+..+.
T Consensus        43 ~l~v~v~gp~~~~~~v~d-~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~   97 (105)
T 2dic_A           43 GLGITVEGPSESKINCRD-NKDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRVP   97 (105)
T ss_dssp             CEEEEEESSSCCCCEEEE-CSSSCEEEEECCSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             ceEEEEECCCCCeEEEEE-CCCCeEEEEEEeCCCeEEEEEEEECCEECCCCCEEEE
Confidence            788899999875443222 3345  4577888899999999754433223444433

>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A

Probab=85.68  E-value=3.4  Score=28.58  Aligned_cols=90  Identities=10%  Similarity=0.007  Sum_probs=57.9

Q ss_pred             eeEEEEEcCCCcceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEee---eccceeeEEEEeeccceee
Q 027560           33 EAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN---ENVTHGQFAFTTTEAGNYM  109 (222)
Q Consensus        33 ~~l~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~---~~~~~~~f~f~~~~~G~y~  109 (222)
                      ..+.=.|.+++...+...+.+|+.+.+..  . .   +   ...+.|..|.+......   ......+++.+.+.+|.|+
T Consensus        16 a~v~G~I~g~~~~~Y~~~a~aGQ~l~v~l--~-s---~---~~~~~i~~pg~~~~~~~~~~~~~~~~~~~~~LP~sG~Y~   86 (111)
T 4g9s_B           16 AQYSGEIKGYDYDTYTFYAKKGQKVHVSI--S-N---E---GADTYLFGPGIDDSVDLSRYSPELDSHGQYSLPASGKYE   86 (111)
T ss_dssp             EEEEEEEETTCCEEEEEEECTTCEEEEEE--S-C---T---TCEEEEECTTCSSCEECSTTCTTCCTTSCEECSSSEEEE
T ss_pred             eEEEEEEeCCCceEEEEEecCCCEEEEEE--e-c---C---CccEEEECCCCccccccccccccCCceEEEEecCCccEE
Confidence            44555799999999999999999888764  2 1   1   44566888876543222   1222456788899999999


Q ss_pred             eeeeeCCC-CCCcccEEEEEEEE
Q 027560          110 ACFWLGSN-PQKVADATLGLDWR  131 (222)
Q Consensus       110 iCf~n~~~-~~~~~~~~v~f~i~  131 (222)
                      +=+..... ...++.....+++.
T Consensus        87 I~V~~~r~~ar~~~~~~Y~L~v~  109 (111)
T 4g9s_B           87 LRVLQTRNDARKNKTKKYNVDIQ  109 (111)
T ss_dssp             EEEECCHHHHHTTCEEEEEEEEE
T ss_pred             EEEEeccchhccCCCcCEEEEEE
Confidence            99864321 01123445555544

>2d7o_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=85.61  E-value=3.2  Score=28.70  Aligned_cols=54  Identities=15%  Similarity=0.227  Sum_probs=34.5

Q ss_pred             eeEEEEECCCCCeEEeeeccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEEE
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLGL  128 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~f  128 (222)
                      .+.+.|.+|++..+ +-.+..+|.  .+|++.++|.|.+.+.-...+-.+.+..+.+
T Consensus        43 ~l~v~v~gp~~~~~-~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~v   98 (111)
T 2d7o_A           43 GLSLAVEGPSKAEI-TCKDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKI   98 (111)
T ss_dssp             CBCCEEESSSCCCB-CCCCCSSSEEEEEECCSSCEEEEEECBBSSCBCTTCSEEEEE
T ss_pred             cEEEEEECCCCceE-EEEECCCCEEEEEEEeCCCeEEEEEEEECCEECCCcCEEEEE
Confidence            78888899986543 222334564  5678889999999997544332334544443

>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}

Probab=83.57  E-value=9.1  Score=28.95  Aligned_cols=53  Identities=11%  Similarity=0.154  Sum_probs=35.0

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|++..+.-. +..+|  ..+|++...|.|.+++.-...+-.+.+..+.
T Consensus       129 ~l~v~I~gp~~~~~~~~-d~~dGty~v~Y~p~~~G~y~i~V~~~g~~I~gSPF~v~  183 (188)
T 2k7p_A          129 GLSLAIEGPSKAEISCT-DNQDGTCSVSYLPVLPGDYSILVKYNEQHVPGSPFTAR  183 (188)
T ss_dssp             CEEEEEECSSCCEEEEE-ECTTSEEEEEEECCSSEEEEEEEEETTEECTTCSEEEE
T ss_pred             CeEEEEeCCCCCeEEEE-ECCCCEEEEEEEeCCCEEEEEEEEECCEECCCCCEEEE
Confidence            78899999988554322 23356  5688889999999999754432223344444

>2dib_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=81.90  E-value=3  Score=29.51  Aligned_cols=54  Identities=15%  Similarity=0.205  Sum_probs=34.6

Q ss_pred             eeEEEEECCCCCeEEee-eccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|+|..+.-. .+..+|.  .+|++.+.|.|++.+.-....-...+..+.
T Consensus        58 ~~~v~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~~~i~V~~~g~~I~gSPF~v~  114 (128)
T 2dib_A           58 HIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDVPIPNSPFKVA  114 (128)
T ss_dssp             CCCEECCCSSSCCCCCEEEECSSSEEEEEECCSSCSEEEEEEBSSSCBCTTCSEEEE
T ss_pred             cEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCEeEEEEEEECCEECCCCCEEEE
Confidence            78899999998643221 2233454  467788999999999765443223444444

>3sd2_A Putative member of DUF3244 protein family; immunoglobulin-like beta-sandwich, structural genomics, JOIN for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron}

Probab=80.85  E-value=6.2  Score=26.95  Aligned_cols=70  Identities=17%  Similarity=0.209  Sum_probs=46.9

Q ss_pred             EEEcCCCcceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECC-CCCeEEeeeccceeeEEEEe--eccceeeeeee
Q 027560           37 LQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSP-YGNNLHHNENVTHGQFAFTT--TEAGNYMACFW  113 (222)
Q Consensus        37 f~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p-~g~~v~~~~~~~~~~f~f~~--~~~G~y~iCf~  113 (222)
                      +-+.|-.++|-+.+   | .+.+.|.-.       .+.+.+.|.|- .|+.+|+.....-...++..  ..+|+|.+=+.
T Consensus        20 I~i~P~~~~~A~I~---n-vlsV~F~~~-------~~~vTItItNe~TG~~VYs~~~s~p~~i~IdLnge~sG~Y~IeI~   88 (101)
T 3sd2_A           20 IPIQPTYEKCAILS---N-ILNVSFGRA-------KDYAIITVTNKATGEIVHSKTYHNTSIVMIDMSSCEKGEYTIHII   88 (101)
T ss_dssp             CCCCCSSEEEEEET---T-EEEEEESSC-------CSCEEEEEEETTTCCEEEEEEESSCSEEEEECTTSCSEEEEEEEE
T ss_pred             eeecccccccEEEe---C-EEEEEeccC-------CCcEEEEEEECCCCcEEEEEeccCCcEEEEEcCCCcCceEEEEEE
Confidence            44555556777765   5 777777321       23899999986 79999987544333455544  45899999887


Q ss_pred             eCCC
Q 027560          114 LGSN  117 (222)
Q Consensus       114 n~~~  117 (222)
                      .+..
T Consensus        89 ~~~~   92 (101)
T 3sd2_A           89 LNDC   92 (101)
T ss_dssp             ETTE
T ss_pred             eCCc
Confidence            5543

>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10

Probab=80.06  E-value=13  Score=28.42  Aligned_cols=43  Identities=14%  Similarity=0.271  Sum_probs=31.2

Q ss_pred             eeEEEEECCCCCeEE-eeecccee--eEEEEeeccceeeeeeeeCCC
Q 027560           74 TVSAKVTSPYGNNLH-HNENVTHG--QFAFTTTEAGNYMACFWLGSN  117 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~-~~~~~~~~--~f~f~~~~~G~y~iCf~n~~~  117 (222)
                      .+.+.|.+|+| .+. .-.+..+|  ..+|++.+.|.|.+++.-...
T Consensus       136 ~l~v~i~~p~g-~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~g~  181 (212)
T 1qfh_A          136 KFEVSITGPAE-EITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGK  181 (212)
T ss_dssp             CEEEEEEECCS-EEEEEEEECSSSEEEEEEEEESSEEEEEEEEETTE
T ss_pred             cEEEEEECCCC-ceeeEEEECCCCEEEEEEEcCCCEEEEEEEEECCE
Confidence            89999999998 332 21233456  557888999999999976543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	97.39
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	95.22
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	93.5
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	93.0
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	92.86
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	92.58
d2d7na1	80	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	92.09
d1qfha2	108	F-actin cross-linking gelation factor (ABP-120) re	91.95
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.65
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	91.39
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	90.75
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.49
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	89.36
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.11
d1qfha1	104	F-actin cross-linking gelation factor (ABP-120) re	88.1
d1wmda1	116	Alkaline serine protease kp-43, C-terminal domain	87.13
d2di9a1	118	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.9
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.83
d2diba1	115	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	83.42
d2dmca1	103	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	82.98
d1nqja_	101	Class 1 collagenase {Bacteria (Clostridium histoly	80.48

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.0013  Score=45.41  Aligned_cols=89  Identities=15%  Similarity=0.088  Sum_probs=53.4

Q ss_pred             EEEEcCCCcceeeEEcCC-CcEEEEEEEEeeCCCCCCCCeeEEEEEC--CCC--------CeEEeeeccc--e--eeEEE
Q 027560           36 WLQIPSSGTKCVSEEINS-NVVVLADYYVIDEAHPEHPPTVSAKVTS--PYG--------NNLHHNENVT--H--GQFAF  100 (222)
Q Consensus        36 ~f~i~~~~~~Cf~e~v~~-~~~i~~~y~v~~~~~~~~~~~i~v~v~~--p~g--------~~v~~~~~~~--~--~~f~f  100 (222)
                      ++.|++|+.......+.+ |+.+.=.|+.. +     . +|.|.|.=  ..|        ..+....+..  .  -.=++
T Consensus         7 tvtV~~G~~~~v~~~v~~~Gs~l~WeF~t~-~-----~-DI~Fgv~~~~~~~~~~~~~~~~~v~p~~r~~s~~~p~~g~~   79 (119)
T d1olma2           7 SVQISRGSSHQVEYEILFPGCVLRWQFMSD-G-----A-DVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTL   79 (119)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEES-S-----S-CEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEEE
T ss_pred             EEEECCCCEEEEEEEEeCCCcEEEEEEEeC-C-----c-cEEEEEEEecccCCccccCceEEEeeeEEecCCceeEccEE
Confidence            456888888777777754 78777666553 1     2 67777751  111        1233222111  1  12246


Q ss_pred             EeeccceeeeeeeeCCCCCCcccEEEEEEEEec
Q 027560          101 TTTEAGNYMACFWLGSNPQKVADATLGLDWRIG  133 (222)
Q Consensus       101 ~~~~~G~y~iCf~n~~~~~~~~~~~v~f~i~~g  133 (222)
                      .++++|.|.+||+|+.+++.  .+.+.+.+++-
T Consensus        80 ~~~~~G~Y~l~FDNs~S~~~--sK~l~Y~i~v~  110 (119)
T d1olma2          80 TCSDPGIYVLRFDNTYSFIH--AKKVNFTVEVL  110 (119)
T ss_dssp             ECCSCEEEEEEEECTTCCCC--SEEEEEEEEEE
T ss_pred             EcCCCEEEEEEEeCCcceEE--eeEEEEEEEEE
Confidence            77899999999999988754  45666655553

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.075  Score=34.97  Aligned_cols=54  Identities=13%  Similarity=0.273  Sum_probs=36.4

Q ss_pred             eeEEEEECCCCCeEEee-eccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|+|+.+.-. .+..+|.  .+|++++.|.|.+.+.-....-.+.+..+.
T Consensus        38 ~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~~I~gSPF~v~   94 (102)
T d2d7ma1          38 LLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIH   94 (102)
T ss_dssp             CEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             cEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEEECCEECCCCCEEEE
Confidence            89999999999864322 2233454  588889999999999765443333454443

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.50  E-value=0.3  Score=31.73  Aligned_cols=54  Identities=17%  Similarity=0.239  Sum_probs=35.2

Q ss_pred             eeEEEEECCCCCeEEee-eccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|+|..+.-. .+..+|.  .+|++.+.|.|++-+.-....-.+.+..+.
T Consensus        37 ~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v~   93 (101)
T d2dj4a1          37 PLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFKVK   93 (101)
T ss_dssp             CEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESSSBCTTCSEEEE
T ss_pred             CEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECCEECCCCCEEEE
Confidence            89999999999865322 2233454  577888999999988654433223444443

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.47  Score=30.16  Aligned_cols=41  Identities=12%  Similarity=0.252  Sum_probs=30.7

Q ss_pred             eeEEEEECCCCCeEEeeeccceeeE--EEEeeccceeeeeeeeC
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHGQF--AFTTTEAGNYMACFWLG  115 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~~f--~f~~~~~G~y~iCf~n~  115 (222)
                      .+.+.|.+|++..+.-.+ ..+|.|  +|++++.|.|.+-+.-.
T Consensus        35 ~l~v~v~~p~~~~~~v~~-~~dg~y~v~ytP~~~G~h~i~V~~~   77 (92)
T d2bp3a1          35 GLSLAIEGPSKAEISCTD-NQDGTCSVSYLPVLPGDYSILVKYN   77 (92)
T ss_dssp             EEEEEEEESSCCEEEEEE-CSSSEEEEEEECSSCEEEEEEEEET
T ss_pred             ceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCccEEEEEEEC
Confidence            889999999997664443 235655  68999999999877543

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.3  Score=31.25  Aligned_cols=53  Identities=13%  Similarity=0.248  Sum_probs=35.5

Q ss_pred             eeEEEEECCCCCeEEeeeccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|++..+.-.+ ..+|.  .+|++.+.|.|.+.+.-....-.+.+..+.
T Consensus        34 ~l~v~v~gp~~~~v~v~d-~~dg~y~v~ytP~~~G~y~i~V~~~g~~I~gSPF~v~   88 (92)
T d2w0pa1          34 GLAIAVEGPSKAEISFED-RKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVP   88 (92)
T ss_dssp             CEEEEEEESSCCEEEEEE-CTTSCEEEEEECSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             ceEEEEEeCCceEEEEEE-CCCCEEEEEEEECCCceEEEEEEECCEECCCCCeEEE
Confidence            888999999987653333 33554  489999999999999654432223444443

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=0.78  Score=30.18  Aligned_cols=55  Identities=18%  Similarity=0.294  Sum_probs=37.3

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEEE
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLGL  128 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~f  128 (222)
                      .+.+.|.+|+|+.+.-. .+..+|  ..+|++.+.|.|++.+.-....-.+.+..+..
T Consensus        37 ~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~~~g~~I~gSPf~v~V   94 (111)
T d2dmba1          37 KVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTVMA   94 (111)
T ss_dssp             CEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSCBCTTCSEEEEE
T ss_pred             cEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEEECCEECCCCCEEEEE
Confidence            89999999999865322 223345  45888999999999997655433344454443

>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.26  Score=30.76  Aligned_cols=55  Identities=16%  Similarity=0.196  Sum_probs=36.9

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEEE
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLGL  128 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~f  128 (222)
                      ++.+.|++|+|..+... .+..+|  ..+|++.+.|.|++=+......-.+++..|..
T Consensus        16 ~l~~~v~~P~G~~~~~~v~~~~dg~y~v~y~P~~~G~h~v~V~~~g~~I~gSPf~v~V   73 (80)
T d2d7na1          16 ELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFYV   73 (80)
T ss_dssp             CEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEEEE
T ss_pred             cEEEEEECCCCCEeceEEEECCCCEEEEEEEECCcEEEEEEEEECCEECCCCCEEEEE
Confidence            89999999999865322 222345  45788899999998886655433345555543

>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.95  E-value=0.79  Score=30.06  Aligned_cols=54  Identities=11%  Similarity=0.091  Sum_probs=34.7

Q ss_pred             eeEEEEECCCCCeEEeeeccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|.+++-..-.+..+|.  .+|++...|.|.+.+.-....-.+.+..+.
T Consensus        32 ~~~v~i~gp~~~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~g~~I~gSPF~v~   87 (108)
T d1qfha2          32 KFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIEGSPFKQV   87 (108)
T ss_dssp             CEEEEEEECCSEEEEEEEECSSSEEEEEEEEESSEEEEEEEEETTEECBTCSEEEE
T ss_pred             eEEEEEECCCcccccEEEECCCCEEEEEEEECcceeEEEEEEECCEECCCCCEEEE
Confidence            888999999886433333334554  478889999999998654433223444444

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.65  E-value=0.96  Score=28.99  Aligned_cols=53  Identities=15%  Similarity=0.253  Sum_probs=35.5

Q ss_pred             eeEEEEECCCCCeEEeeeccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      ++.+.|.+|++..+.-.+ ..+|.  .+|++.+.|.|.+.+.-....-.+.+..+.
T Consensus        36 ~l~v~i~gp~~~~v~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v~   90 (98)
T d2di8a1          36 GISLAVEGPSKVDIQTED-LEDGTCKVSYFPTVPGVYIVSTKFADEHVPGSPFTVK   90 (98)
T ss_dssp             CEEEEEESSSCCCEECCB-CTTSCEEEEECCCSCSEEEEEEEESSCBCTTCSEEEE
T ss_pred             ceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEEE
Confidence            899999999887653332 23454  468889999999998654433234454544

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.68  Score=29.53  Aligned_cols=44  Identities=16%  Similarity=0.253  Sum_probs=31.6

Q ss_pred             eeEEEEECCCCCeEE-eeecccee--eEEEEeeccceeeeeeeeCCC
Q 027560           74 TVSAKVTSPYGNNLH-HNENVTHG--QFAFTTTEAGNYMACFWLGSN  117 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~-~~~~~~~~--~f~f~~~~~G~y~iCf~n~~~  117 (222)
                      .+++.|.+|+|..+- .-.+..+|  ..+|++++.|.|++.+.-...
T Consensus        38 ~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~~~g~   84 (96)
T d1v05a_          38 MMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGDE   84 (96)
T ss_dssp             CEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETTE
T ss_pred             ceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEEECCE
Confidence            789999999986542 22233344  458888999999999976543

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.75  E-value=0.99  Score=28.97  Aligned_cols=54  Identities=13%  Similarity=0.133  Sum_probs=36.2

Q ss_pred             eeEEEEECCCCCeEEee-eccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+++.|.+|+|..+--. .+..+|.  .+|++.+.|.|.+.+.-....-.+.+..+.
T Consensus        35 ~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~~g~~I~gSPf~v~   91 (99)
T d2d7pa1          35 VIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIR   91 (99)
T ss_dssp             CEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             eEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEECCEECCCCCEEEE
Confidence            89999999999765332 2233454  468889999999999765543223444444

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.49  E-value=1.2  Score=28.54  Aligned_cols=54  Identities=17%  Similarity=0.218  Sum_probs=35.1

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~--~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|+|+.+.-. .+..+|  ..+|++.+.|.|++.+.-....-.+.+..+.
T Consensus        36 ~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~~V~gSPf~v~   92 (100)
T d2diaa1          36 ALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGELVPHFPARVK   92 (100)
T ss_dssp             CEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             cEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEEECCEECCCCCEEEE
Confidence            88999999998754322 223344  5688889999999999754432223344433

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.36  E-value=1.7  Score=27.66  Aligned_cols=54  Identities=17%  Similarity=0.201  Sum_probs=35.7

Q ss_pred             eeEEEEECCCCCeEEeeeccceeeEEEEeeccceeeeeeeeCC-CCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGS-NPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~iCf~n~~-~~~~~~~~~v~  127 (222)
                      .+.+.|.+|++..+.-......-..+|++.+.|.|.+.+.-.. ..-.+.+.++.
T Consensus        36 ~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~~~g~~~I~gSPF~v~   90 (97)
T d2nqca1          36 ALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAK   90 (97)
T ss_dssp             CEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEEESSSCBCTTCSEEEE
T ss_pred             ceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEEECCccccCCcCEEEE
Confidence            8899999999876644433323456899999999999995433 22223454444

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=1.5  Score=27.86  Aligned_cols=53  Identities=11%  Similarity=0.186  Sum_probs=34.8

Q ss_pred             eeEEEEECCCCCeEEeeeccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      ++.+.|.+|++..+.-.+ ..+|.  .+|++.+.|.|.+.+.-....-.+.+..+.
T Consensus        36 ~l~v~v~~p~~~~~~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v~   90 (98)
T d2dica1          36 GLGITVEGPSESKINCRD-NKDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRVP   90 (98)
T ss_dssp             CEEEEEESSSCCCCEEEE-CSSSCEEEEECCSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             CcEEEEEeCCCcEEEEEE-CCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEEE
Confidence            789999999887553222 23454  468889999999999654433223444444

>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.10  E-value=0.44  Score=30.95  Aligned_cols=43  Identities=16%  Similarity=0.337  Sum_probs=31.0

Q ss_pred             eeEEEEECCCCCeEEee-eccceeeE--EEEeeccceeeeeeeeCC
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHGQF--AFTTTEAGNYMACFWLGS  116 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~~f--~f~~~~~G~y~iCf~n~~  116 (222)
                      .+.+.|.+|+|..+... .+..+|.|  +|++...|.|.+-+.-..
T Consensus        45 ~~~v~v~~p~g~~~~~~v~d~~dGtY~v~y~p~~~G~~~i~V~~~g   90 (104)
T d1qfha1          45 PFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRG   90 (104)
T ss_dssp             CEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEETT
T ss_pred             eeEEEEECCCCCEEeeEEEECCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            79999999998765322 22335555  778889999999886544

>d1wmda1 b.18.1.20 (A:319-434) Alkaline serine protease kp-43, C-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Proprotein convertase P-domain
domain: Alkaline serine protease kp-43, C-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

Probab=87.13  E-value=1.6  Score=29.09  Aligned_cols=78  Identities=12%  Similarity=0.073  Sum_probs=50.3

Q ss_pred             EEcCCCcceeeEEcCCCcEEEEEEEEeeCCC-CCC----CCeeEEEEECCCCCeEEeeec-----------cceeeEEEE
Q 027560           38 QIPSSGTKCVSEEINSNVVVLADYYVIDEAH-PEH----PPTVSAKVTSPYGNNLHHNEN-----------VTHGQFAFT  101 (222)
Q Consensus        38 ~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~~-~~~----~~~i~v~v~~p~g~~v~~~~~-----------~~~~~f~f~  101 (222)
                      .|.+|+..=|...++.+..+.+.-.-.|... ..+    .-++++.|.+|+|..++-...           -.-.+..+.
T Consensus         8 ~l~~g~~~ty~~~v~~~~~l~vtL~W~D~p~s~~a~~~LvnDLDL~V~~p~G~~~~~n~~~~~~~~~~D~~nnvE~V~i~   87 (116)
T d1wmda1           8 SLSTSQKATYSFTATAGKPLKISLVWSDAPASTTASVTLVNDLDLVITAPNGTQYVGNDFTSPYNDNWDGRNNVENVFIN   87 (116)
T ss_dssp             EECTTCEEEEEEEECTTSCEEEEEECCCCCCCTTCSCCCCSEEEEEEECTTSCEEETTCCSSSTTSCCCSSCSEEEEEES
T ss_pred             cCCCCCeEEEEEEeCCCCCEEEEEEeeCCCCCCCcchheeeeeeEEEEcCCCCEEeCCccccCccCccccCCcEeEEEEC
Confidence            4667777777777777776766665555421 100    029999999999987643210           012466677


Q ss_pred             eeccceeeeeeeeC
Q 027560          102 TTEAGNYMACFWLG  115 (222)
Q Consensus       102 ~~~~G~y~iCf~n~  115 (222)
                      .+..|.|++-+...
T Consensus        88 ~p~~G~y~i~V~~~  101 (116)
T d1wmda1          88 APQSGTYTIEVQAY  101 (116)
T ss_dssp             SCCSEEEEEEEEEE
T ss_pred             CCCCeEEEEEEEEE
Confidence            77889999988653

>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.90  E-value=3.2  Score=27.13  Aligned_cols=53  Identities=11%  Similarity=0.214  Sum_probs=36.3

Q ss_pred             eeEEEEECCCCCeEEeeeccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHHNENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+.+.|.+|++..+.-.+ ..+|.  .+|++.+.|.|++.+.-....-.+.+.++.
T Consensus        56 ~l~v~i~~p~~~~~~v~~-~~dG~y~v~ytP~~~G~y~i~V~~~g~~i~gSPf~v~  110 (118)
T d2di9a1          56 GLGLTVEGPCEAKIECSD-NGDGTCSVSYLPTKPGEYFVNILFEEVHIPGSPFKAD  110 (118)
T ss_dssp             CEEEEECSSSCCEEEEEE-CSSSEEEEEEECSSSSEEEEEEEESSCBCTTCSEEEE
T ss_pred             ccEEEEecCCceEEEEEE-CCCCEEEEEEEeCCcEeEEEEEEECCEECCCCCEEEE
Confidence            889999999987653332 23454  588889999999999765543334454444

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.83  E-value=0.54  Score=29.67  Aligned_cols=43  Identities=21%  Similarity=0.298  Sum_probs=28.7

Q ss_pred             eeEEEEECCCCCeEEee-eccceeeE--EEEeeccceeeeeeeeCC
Q 027560           74 TVSAKVTSPYGNNLHHN-ENVTHGQF--AFTTTEAGNYMACFWLGS  116 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~~-~~~~~~~f--~f~~~~~G~y~iCf~n~~  116 (222)
                      ++.+.|.+|+|+.+.-. .+..+|.|  +|++.+.|.|.+-+.-..
T Consensus        25 ~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~~~g   70 (88)
T d2j3sa2          25 DMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKG   70 (88)
T ss_dssp             CEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEETT
T ss_pred             cEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEEECC
Confidence            89999999999876432 22334544  688889999998886543

>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.42  E-value=1.7  Score=28.56  Aligned_cols=54  Identities=15%  Similarity=0.210  Sum_probs=35.0

Q ss_pred             eeEEEEECCCCCeEEe-eeccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHH-NENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~-~~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      .+++.|.+|+|..+-- -.+..+|.  .+|++++.|.|++.+.-....-.+.+.++.
T Consensus        51 ~l~v~v~~p~g~~v~~~v~~~~dG~y~v~y~P~~~G~~~i~V~~~g~~I~gSPf~v~  107 (115)
T d2diba1          51 HIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDVPIPNSPFKVA  107 (115)
T ss_dssp             CCCEECCCSSSCCCCCEEEECSSSEEEEEECCSSCSEEEEEEBSSSCBCTTCSEEEE
T ss_pred             cEEEEEEeCCCCEeeeEEEECCCCEEEEEEEeCCCEeEEEEEEECCEECCCCCEEEE
Confidence            8899999999976422 12233454  578889999999999654433223344443

>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.98  E-value=2.3  Score=27.12  Aligned_cols=54  Identities=13%  Similarity=0.254  Sum_probs=33.7

Q ss_pred             eeEEEEECCCCCeEEe-eeccceee--EEEEeeccceeeeeeeeCCCCCCcccEEEE
Q 027560           74 TVSAKVTSPYGNNLHH-NENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (222)
Q Consensus        74 ~i~v~v~~p~g~~v~~-~~~~~~~~--f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  127 (222)
                      ++.+.|.+|+|+.+-- -.+..+|.  .+|++++.|.|++=+.-....-.+.+..+.
T Consensus        39 ~l~v~v~~P~g~~v~~~v~~~~dg~y~v~f~P~~~G~h~i~V~~~g~~i~gSPf~v~   95 (103)
T d2dmca1          39 SLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGNHVANSPVSIM   95 (103)
T ss_dssp             TBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSSBCTTCSEEEE
T ss_pred             cEEEEEECCCCCEeccEEEECCCCEEEEEEEeCCceeEEEEEEECCEECCCCCEEEE
Confidence            8899999999986532 12223454  468889999999766433332223444443

>d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}

class: All beta proteins
fold: CUB-like
superfamily: Collagen-binding domain
family: Collagen-binding domain
domain: Class 1 collagenase
species: Bacteria (Clostridium histolyticum) [TaxId: 1498]

Probab=80.48  E-value=4.6  Score=25.39  Aligned_cols=67  Identities=13%  Similarity=-0.002  Sum_probs=41.3

Q ss_pred             CCcceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccce--eeEEEEeeccceeeeeeee
Q 027560           42 SGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTH--GQFAFTTTEAGNYMACFWL  114 (222)
Q Consensus        42 ~~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~--~~f~f~~~~~G~y~iCf~n  114 (222)
                      ....=|..+++++..+.++..-..    + . ++.+.++|++|..+........  .........+|.|.+=+..
T Consensus        20 dd~D~y~f~l~~~~~v~i~l~~~~----~-~-d~~l~lyd~~g~~~~~~~~~~~~~~~~~~~~~~~GtYyi~V~~   88 (101)
T d1nqja_          20 DSRDYYSFEVKEEGEVNIELDKKD----E-F-GVTWTLHPESNINDRITYGQVDGNKVSNKVKLRPGKYYLLVYK   88 (101)
T ss_dssp             CCEEEEEEEESSCEEEEEEEEESS----S-S-EEEEEEEECC----CCEECEEETTEEEEEEEECSEEEEEEEEE
T ss_pred             CcceEEEEECCCCCEEEEEEeCCc----c-C-CeEEEEEcCCCCEEEEecCCCCCceEEEEEecCCeEEEEEEEe
Confidence            446667778889988877665321    1 2 8999999999987755433222  2333334568999988864