Citrus Sinensis ID: 027572

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MTINLGGITSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTVELL
Secondary Structure (PSIPRED)
ccccccccEEEEccccHHHHHHHHHHHHHHHHHHccHHHccccccccccccccEEcccccEEEEcccccccEEEEEEEcccccccHHHHHHHHHcccccccEEEEEcccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHccccccccccccEEHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEccccccccccccHHHHHHHHHHHHHHHHHccHHHHccccccccccHHHHEEcccccEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHcccccccEEEEccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccEEEEEEEEcccccHHHHHHHHHHHcccccHHHcccHHHHHHHHHHHHccccccccHHcc
Coil and Loop (DISEMBL)
mtinlggitshshipngeRRARLYDKMARDLDDHGAAFLKQGETSQSLLLSdiftlkdgsvtpvhkaanppvranvlylspkysvpisdavkrifsphfdkviwfqnsslyhfsmfhashhispvpatedeIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCwqvisgtdpMTIRAKLRtalpnapekqlydpaiLHTSFARllghprasptvell
Flexible Loop (DISEMBL)
mtinlggitshshipngERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVtpvhkaanppvrANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLlghprasptvell
Low Complexity Region (SEG)
MTINLGGITSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPatedeieaeatavravaeDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTVELL
Disordered region (IsUnstruct)
************************************AFL******QSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLL************
Disordered Region (DISOPRED)
***************************ARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPR********
Disordered Region (DISEMBL)
MTINLGGITSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPR********
Disordered Region (DISPRO)
*TINLGGITSH*H****ERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHP*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTINLGGITSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTVELL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
255540995	314	conserved hypothetical protein [Ricinus	0.909	0.640	0.840	2e-95
449440782	308	PREDICTED: uncharacterized protein LOC10	0.909	0.652	0.805	6e-92
449477262	308	PREDICTED: uncharacterized protein LOC10	0.914	0.655	0.797	2e-91
359491718	310	PREDICTED: uncharacterized protein LOC10	0.941	0.670	0.793	2e-91
356516786	315	PREDICTED: uncharacterized protein LOC10	0.927	0.650	0.791	2e-91
255645528	315	unknown [Glycine max]	0.927	0.650	0.791	2e-91
225456739	324	PREDICTED: uncharacterized protein LOC10	0.932	0.635	0.796	3e-91
224141705	249	predicted protein [Populus trichocarpa]	0.855	0.759	0.842	2e-87
356507143	309	PREDICTED: uncharacterized protein LOC10	0.914	0.653	0.774	3e-87
357139735	319	PREDICTED: uncharacterized protein LOC10	0.882	0.611	0.728	4e-79

>gi|255540995|ref|XP_002511562.1| conserved hypothetical protein [Ricinus communis] gi|223550677|gb|EEF52164.1| conserved hypothetical protein [Ricinus communis]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/201 (84%), Positives = 187/201 (93%)

Query: 16  NGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRAN 75
           N E+R++LYDKMARDLDD+G +FLK G+TSQSL LSDIFTLKDGSVTPV KAANPPVRAN
Sbjct: 54  NMEQRSKLYDKMARDLDDNGPSFLKHGQTSQSLSLSDIFTLKDGSVTPVLKAANPPVRAN 113

Query: 76  VLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAE 135
           VLYLS +YSV IS+AVKRIFSP+FDK IWFQNSS+YHFSMFHASHHI PVPATEDE+EAE
Sbjct: 114 VLYLSSEYSVRISEAVKRIFSPYFDKAIWFQNSSVYHFSMFHASHHIGPVPATEDEVEAE 173

Query: 136 ATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQL 195
           A+AV +VAE LCPL+IVLDRV+LTSTGVLLGCWQVISG DP+TIRAKLRTALP+APEKQL
Sbjct: 174 ASAVGSVAEGLCPLEIVLDRVVLTSTGVLLGCWQVISGPDPITIRAKLRTALPHAPEKQL 233

Query: 196 YDPAILHTSFARLLGHPRASP 216
           YD AILHTSFARLLGHP+ SP
Sbjct: 234 YDAAILHTSFARLLGHPKDSP 254

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440782|ref|XP_004138163.1| PREDICTED: uncharacterized protein LOC101220816 [Cucumis sativus]

 Score =  342 bits (877), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 162/201 (80%), Positives = 181/201 (90%)

Query: 18  ERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVL 77
           E R++LYDKM RDLD+ GA FLK GETSQSL LSDIFT+KDG+VTPV KAANPPVRANVL
Sbjct: 48  ELRSKLYDKMERDLDEKGAVFLKGGETSQSLSLSDIFTIKDGTVTPVLKAANPPVRANVL 107

Query: 78  YLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEAT 137
           YLS +YSVPI +AVK IF P+FD+ IWFQNSSLYHFSMFHASHHI+P+PA+ DEIEAEA+
Sbjct: 108 YLSTEYSVPIFEAVKSIFDPYFDEAIWFQNSSLYHFSMFHASHHITPIPASNDEIEAEAS 167

Query: 138 AVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYD 197
           AV++  E +C LKIVLDRVILTSTGVLLGCWQVISGTDP+TIRAKLRTALP+APEKQLYD
Sbjct: 168 AVKSATEHMCHLKIVLDRVILTSTGVLLGCWQVISGTDPVTIRAKLRTALPHAPEKQLYD 227

Query: 198 PAILHTSFARLLGHPRASPTV 218
            AILHTSFARLLGHP+ S TV
Sbjct: 228 AAILHTSFARLLGHPKISQTV 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477262|ref|XP_004154975.1| PREDICTED: uncharacterized protein LOC101228237 [Cucumis sativus]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 161/202 (79%), Positives = 182/202 (90%)

Query: 18  ERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVL 77
           E R++LYDKM RDLD+ GA FLK GETSQSL LSDIFT+KDG+VTPV KAANPPVRANVL
Sbjct: 48  ELRSKLYDKMERDLDEKGAVFLKGGETSQSLSLSDIFTIKDGTVTPVLKAANPPVRANVL 107

Query: 78  YLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEAT 137
           YLS +YSVPI +AVK IF P+FD+ IWFQNSSLYHFSMFHASHHI+P+PA+ DEIEAEA+
Sbjct: 108 YLSTEYSVPIFEAVKSIFDPYFDEAIWFQNSSLYHFSMFHASHHITPIPASNDEIEAEAS 167

Query: 138 AVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYD 197
           AV++  E +C LKIVLDRVILTSTGVLLGCWQVISGTDP+TIRAKLRTALP+APEKQLYD
Sbjct: 168 AVKSATEHMCHLKIVLDRVILTSTGVLLGCWQVISGTDPVTIRAKLRTALPHAPEKQLYD 227

Query: 198 PAILHTSFARLLGHPRASPTVE 219
            AILHTSFARLLGHP+ S T++
Sbjct: 228 AAILHTSFARLLGHPKISQTLD 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491718|ref|XP_003634311.1| PREDICTED: uncharacterized protein LOC100250065 isoform 2 [Vitis vinifera]

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 165/208 (79%), Positives = 184/208 (88%)

Query: 10  SHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAAN 69
           S S + + ERR++LYDKM  DL++HGAAFL+ GETSQSL LSD+FTLKDG VTPV KAA 
Sbjct: 42  SVSTMSDSERRSKLYDKMESDLNEHGAAFLEHGETSQSLSLSDLFTLKDGIVTPVLKAAK 101

Query: 70  PPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATE 129
           PPVRANVLYLS ++SVPIS+AV+ IFSP+FDKVIWFQNSSLYHFSMFHASHHI+PVPATE
Sbjct: 102 PPVRANVLYLSTEFSVPISEAVRSIFSPYFDKVIWFQNSSLYHFSMFHASHHITPVPATE 161

Query: 130 DEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPN 189
            EIE EATAV AVA+ LCPLKIVLDRV+LT TGVLLGCWQV SGTDP+TIRAKLRTALP 
Sbjct: 162 VEIEGEATAVEAVAKALCPLKIVLDRVLLTPTGVLLGCWQVASGTDPVTIRAKLRTALPR 221

Query: 190 APEKQLYDPAILHTSFARLLGHPRASPT 217
           AP+ QLYD AILHTSFARLLG P+ SPT
Sbjct: 222 APKNQLYDNAILHTSFARLLGPPKFSPT 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516786|ref|XP_003527074.1| PREDICTED: uncharacterized protein LOC100791859 [Glycine max]

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 163/206 (79%), Positives = 185/206 (89%), Gaps = 1/206 (0%)

Query: 16  NGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRAN 75
           N  +R++LYDKM RDLD+HGAAFLK GETSQSL LSDIFTLKDGSVTPV K ANPPVRAN
Sbjct: 51  NTGQRSKLYDKMGRDLDEHGAAFLKHGETSQSLSLSDIFTLKDGSVTPVLKPANPPVRAN 110

Query: 76  VLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAE 135
           VLYLS ++SVPI++AVK +F+P+FDK IWFQNSSLYHFSMFHASHHI PVPAT++EIEAE
Sbjct: 111 VLYLSTEFSVPIAEAVKNVFNPYFDKAIWFQNSSLYHFSMFHASHHIVPVPATKEEIEAE 170

Query: 136 ATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQL 195
           A++V AV   LCPLKIVLDRV+LTSTGVLLGCWQV SGTDP+TIRAKL+ ALP+APEKQL
Sbjct: 171 ASSVEAVVATLCPLKIVLDRVVLTSTGVLLGCWQVTSGTDPITIRAKLKNALPHAPEKQL 230

Query: 196 YDPAILHTSFARLLGHPRA-SPTVEL 220
           YD AILHTSFARLLG P+A SP+ +L
Sbjct: 231 YDAAILHTSFARLLGPPKALSPSEQL 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645528|gb|ACU23259.1| unknown [Glycine max]

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 163/206 (79%), Positives = 185/206 (89%), Gaps = 1/206 (0%)

Query: 16  NGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRAN 75
           N  +R++LYDKM RDLD+HGAAFLK GETSQSL LSDIFTLKDGSVTPV K ANPPVRAN
Sbjct: 51  NTGQRSKLYDKMGRDLDEHGAAFLKHGETSQSLSLSDIFTLKDGSVTPVLKPANPPVRAN 110

Query: 76  VLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAE 135
           VLYLS ++SVPI++AVK +F+P+FDK IWFQNSSLYHFSMFHASHHI PVPAT++EIEAE
Sbjct: 111 VLYLSTEFSVPIAEAVKNVFNPYFDKAIWFQNSSLYHFSMFHASHHIVPVPATKEEIEAE 170

Query: 136 ATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQL 195
           A++V AV   LCPLKIVLDRV+LTSTGVLLGCWQV SGTDP+TIRAKL+ ALP+APEKQL
Sbjct: 171 ASSVEAVVATLCPLKIVLDRVVLTSTGVLLGCWQVTSGTDPITIRAKLKNALPHAPEKQL 230

Query: 196 YDPAILHTSFARLLGHPRA-SPTVEL 220
           YD AILHTSFARLLG P+A SP+ +L
Sbjct: 231 YDAAILHTSFARLLGPPKALSPSEQL 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456739|ref|XP_002275470.1| PREDICTED: uncharacterized protein LOC100250065 isoform 1 [Vitis vinifera] gi|297733993|emb|CBI15240.3| unnamed protein product [Vitis vinifera]

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 164/206 (79%), Positives = 183/206 (88%)

Query: 12  SHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPP 71
           S + + ERR++LYDKM  DL++HGAAFL+ GETSQSL LSD+FTLKDG VTPV KAA PP
Sbjct: 45  STMSDSERRSKLYDKMESDLNEHGAAFLEHGETSQSLSLSDLFTLKDGIVTPVLKAAKPP 104

Query: 72  VRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDE 131
           VRANVLYLS ++SVPIS+AV+ IFSP+FDKVIWFQNSSLYHFSMFHASHHI+PVPATE E
Sbjct: 105 VRANVLYLSTEFSVPISEAVRSIFSPYFDKVIWFQNSSLYHFSMFHASHHITPVPATEVE 164

Query: 132 IEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAP 191
           IE EATAV AVA+ LCPLKIVLDRV+LT TGVLLGCWQV SGTDP+TIRAKLRTALP AP
Sbjct: 165 IEGEATAVEAVAKALCPLKIVLDRVLLTPTGVLLGCWQVASGTDPVTIRAKLRTALPRAP 224

Query: 192 EKQLYDPAILHTSFARLLGHPRASPT 217
           + QLYD AILHTSFARLLG P+ SPT
Sbjct: 225 KNQLYDNAILHTSFARLLGPPKFSPT 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141705|ref|XP_002324205.1| predicted protein [Populus trichocarpa] gi|222865639|gb|EEF02770.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 160/190 (84%), Positives = 173/190 (91%), Gaps = 1/190 (0%)

Query: 27  MARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVP 86
           M RDLD+ GAAFLK GETSQSLLLSDIFTLKDGSVTPV KAANPPVRANVLYLSP+YSVP
Sbjct: 1   MERDLDERGAAFLKHGETSQSLLLSDIFTLKDGSVTPVLKAANPPVRANVLYLSPEYSVP 60

Query: 87  ISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDL 146
           ISD VK  FS +FDKV WFQNSS+YH SMFHASHHI PVP TEDEIEAE  AV+AVA+ L
Sbjct: 61  ISDNVKNTFSSYFDKV-WFQNSSVYHSSMFHASHHIEPVPVTEDEIEAEVNAVKAVADFL 119

Query: 147 CPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFA 206
           CPLKIVLDRV+LTSTGVLLGCWQVISGTDP+TIRAKL+TALP+AP+KQLYD AILHTSFA
Sbjct: 120 CPLKIVLDRVVLTSTGVLLGCWQVISGTDPLTIRAKLKTALPHAPKKQLYDDAILHTSFA 179

Query: 207 RLLGHPRASP 216
           RLLGHP++ P
Sbjct: 180 RLLGHPKSPP 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507143|ref|XP_003522330.1| PREDICTED: uncharacterized protein LOC100789685, partial [Glycine max]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/204 (77%), Positives = 180/204 (88%), Gaps = 2/204 (0%)

Query: 16  NGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRAN 75
           N  +R++LYDKM RDLD+HGAAFLK GETSQSL LSDIFTLKDGSVTP  K ANPPVRAN
Sbjct: 40  NTGQRSKLYDKMGRDLDEHGAAFLKHGETSQSLSLSDIFTLKDGSVTPALKPANPPVRAN 99

Query: 76  VLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAE 135
           VLYLS ++SVPI++AVK +F+P+FDK IWFQNSSLYHFSMFHASHHI PVPAT++EIEAE
Sbjct: 100 VLYLSTEFSVPIAEAVKNVFNPYFDKAIWFQNSSLYHFSMFHASHHIVPVPATKEEIEAE 159

Query: 136 ATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQL 195
           A++V  VA  LCPLKIVLDRV LTSTGVLLGCWQVI+GTDP+TIRA L+ ALP+A EKQL
Sbjct: 160 ASSVEVVAATLCPLKIVLDRV-LTSTGVLLGCWQVITGTDPITIRANLKNALPHASEKQL 218

Query: 196 YDPAILHTSFARLLGHPRA-SPTV 218
           YD AILH SFARLLG P+A SP++
Sbjct: 219 YDAAILHLSFARLLGLPKALSPSI 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357139735|ref|XP_003571433.1| PREDICTED: uncharacterized protein LOC100839923 [Brachypodium distachyon]

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 142/195 (72%), Positives = 165/195 (84%)

Query: 19  RRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLY 78
           RRA LY +MA DLD+ GAAFLK GETSQSL LSD+F ++DG+V P  KAA+PPVRANVLY
Sbjct: 50  RRAELYGRMAGDLDERGAAFLKGGETSQSLTLSDLFDVRDGAVVPKLKAADPPVRANVLY 109

Query: 79  LSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATA 138
           L P+++  IS AVK +F PHFD+VIWFQNSS+YHFSMFHASHH+ P+ ATEDEIEAEA A
Sbjct: 110 LDPEFAAVISKAVKEVFLPHFDQVIWFQNSSMYHFSMFHASHHLEPILATEDEIEAEADA 169

Query: 139 VRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDP 198
           V+ V E +CPLKIVLDRV+LTSTGVLLG WQV SGTDP  IR+KLR ALP AP+KQLYDP
Sbjct: 170 VKRVTEAVCPLKIVLDRVVLTSTGVLLGLWQVESGTDPADIRSKLREALPRAPQKQLYDP 229

Query: 199 AILHTSFARLLGHPR 213
            +LHTSFAR+LG P+
Sbjct: 230 VLLHTSFARVLGPPK 244

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2019230	314	AT1G74530 "AT1G74530" [Arabido	0.941	0.662	0.622	8.2e-67

TAIR|locus:2019230 AT1G74530 "AT1G74530" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 130/209 (62%), Positives = 156/209 (74%)

Query:     9 TSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAA 68
             +S S +   E+  RLY+KM +DL ++G  FLKQGETSQSL LSD+FTLKDG + PV K A
Sbjct:    46 SSDSFVSYAEQSTRLYNKMEQDLQENGPVFLKQGETSQSLSLSDLFTLKDGKIAPVLKVA 105

Query:    69 NPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPXX 128
             NPPVRANVL+LS +YSVP+ + VK +FSP+F+  IWFQ+S +YHFSMFHAS+HI  VP  
Sbjct:   106 NPPVRANVLHLSTEYSVPVLEVVKNVFSPYFENTIWFQDSKMYHFSMFHASNHIFSVPAT 165

Query:   129 XXXXXXXXXXXXXXXXDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALP 188
                             +LCPL+I+LDRV+LTSTGVLLGCW+V SG DP+TIR KLR+ LP
Sbjct:   166 EVEVEAEAAAVKAVAKELCPLEIILDRVLLTSTGVLLGCWKVNSGDDPITIRLKLRSVLP 225

Query:   189 NAPEKQLYDPAILHTSFARLLGHPRASPT 217
              APEKQLYD AILHTS ARLLG P  SPT
Sbjct:   226 RAPEKQLYDAAILHTSLARLLGPP-ISPT 253


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      221       203   0.00092  111 3  11 22  0.45    32
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  164 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.35u 0.09s 17.44t   Elapsed:  00:00:00
  Total cpu time:  17.35u 0.09s 17.44t   Elapsed:  00:00:00
  Start:  Fri May 10 23:13:37 2013   End:  Fri May 10 23:13:37 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
PF13563	153	2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB	96.84
PRK13679	168	hypothetical protein; Provisional	96.41
TIGR02258	179	2_5_ligase 2'-5' RNA ligase. This protein family c	96.11
COG1514	180	LigT 2'-5' RNA ligase [Translation, ribosomal stru	94.24
PRK15124	176	2'-5' RNA ligase; Provisional	94.1
PF10469	209	AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; Inte	92.5
PF02834	87	LigT_PEase: LigT like Phosphoesterase; InterPro: I	91.88
PF08975	118	2H-phosphodiest: Domain of unknown function (DUF18	83.31

>PF13563 2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB: 1IUH_A

Probab=96.84  E-value=0.00071  Score=52.49  Aligned_cols=95  Identities=20%  Similarity=0.150  Sum_probs=62.5

Q ss_pred             ceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEeEEEEcC--CcceEEeeeecCCCChHHHHHHHHHhCC
Q 027572          111 YHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTS--TGVLLGCWQVISGTDPMTIRAKLRTALP  188 (221)
Q Consensus       111 yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cPi~~~leRVV~ts--sGvlL~cwqv~~g~dp~~iR~~Lr~alP  188 (221)
                      .|+|++......+..       ++=.++++.++++.-|+++.++++-.-.  ++ +|.+ .+........|+++|.++++
T Consensus        26 pHITL~~~~~~~~~~-------~~~~~~l~~~~~~~~~f~l~l~~~~~F~~~~~-vi~l-~~~~~~~L~~L~~~l~~~~~   96 (153)
T PF13563_consen   26 PHITLAFPFDIDDSL-------DELVEALARLAAGFPPFELRLDGFGSFPGKGR-VIFL-NVEPSPELEALHRALREALR   96 (153)
T ss_dssp             -EEEEEEEEE--GGG-------HHHHHHHHHHHHHS--EEEEEEEEEEESSSSS-SEEE-EEEE-HHHHHHHHHHHHHHH
T ss_pred             CEeEEEecCcccccH-------HHHHHHHHHHHccCCCeEEEEccEEEcCCCCC-EEEE-EcCCCHHHHHHHHHHHHHHH
Confidence            999999886544322       5556678888889999999999999884  55 3333 46556677999999999988


Q ss_pred             CCCccCcc-CceeeeehhhhhcCCCCC
Q 027572          189 NAPEKQLY-DPAILHTSFARLLGHPRA  214 (221)
Q Consensus       189 ~AP~kQ~~-d~~IlHtTlaRlL~Pp~~  214 (221)
                      ....++-. ++.+-|.|+||-+...+.
T Consensus        97 ~~~~~~~~~~~~~PHiTia~~~~~~~~  123 (153)
T PF13563_consen   97 PFGFKQDSYRPFRPHITIARRLSPKQA  123 (153)
T ss_dssp             HHHGGGGGGS----EEEEEEESS----
T ss_pred             HcCCccccCCCcceEEEEeccCCcchh
Confidence            77665533 789999999999988765

>PRK13679 hypothetical protein; Provisional

Probab=96.41  E-value=0.03  Score=46.04  Aligned_cols=122  Identities=16%  Similarity=0.257  Sum_probs=78.6

Q ss_pred             EEEEeecCcccchHHHHHHHHhcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEE
Q 027572           73 RANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIV  152 (221)
Q Consensus        73 Ra~Vl~l~~~~a~~i~~av~~~l~p~~d~~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cPi~~~  152 (221)
                      +.+.+.+|.+..+.+.+ +++.+.+.   .-|+ +|   |+|+-.      |-..++++++.=++++++++....|+++.
T Consensus         3 ~~iai~~p~~~~~~l~~-~~~~~~~~---~~~v-~p---HITL~f------~g~~~~~~~~~l~~~l~~~~~~~~pf~l~   68 (168)
T PRK13679          3 YGIVLFPSKKIQDFANS-YRKRYDPH---YALI-PP---HITLKE------PFEISDEQLDSIVEELRAIASETKPFTLH   68 (168)
T ss_pred             eEEEEcCCHHHHHHHHH-HHHhhCcc---cccC-CC---ceEEec------CCCCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            46677777755455533 34445442   2253 44   999976      11234556666677888889899999999


Q ss_pred             EeEEEEcC--CcceEEeeeecCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhhcCCCC
Q 027572          153 LDRVILTS--TGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPR  213 (221)
Q Consensus       153 leRVV~ts--sGvlL~cwqv~~g~dp~~iR~~Lr~alP~AP~kQ~~d~~IlHtTlaRlL~Pp~  213 (221)
                      ++.+-.=+  +|++-+  .+....+...|+++|++.+=+. +.+  .+.+-|.||||.+++.+
T Consensus        69 l~~~~~F~~~~~vl~l--~~~~~~~L~~L~~~l~~~~~~~-~~~--~~f~PHiTlar~~~~~~  126 (168)
T PRK13679         69 VTKVSSFAPTNNVIYF--KVEKTEELEELHERLHSGDFYG-EAE--YAFVPHITIGQGLSDDE  126 (168)
T ss_pred             EeccccCCCCCCEEEE--EccCCHHHHHHHHHHHhccccc-ccC--CCCCCeEEeeCCCCcHH
Confidence            99985532  355533  3555456799999998775322 222  35889999999987643

>TIGR02258 2_5_ligase 2'-5' RNA ligase

Probab=96.11  E-value=0.036  Score=45.08  Aligned_cols=123  Identities=20%  Similarity=0.283  Sum_probs=72.1

Q ss_pred             EeecCcccchHHHHHHHHhcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEeE
Q 027572           76 VLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDR  155 (221)
Q Consensus        76 Vl~l~~~~a~~i~~av~~~l~p~~d~~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cPi~~~leR  155 (221)
                      .+++|++..+.|.+.-+++-..  .......+++.+|+|+.--    ...  ++.+++.=.+++++++.  .|+++.++.
T Consensus         6 Al~~p~~~~~~l~~~~~~l~~~--~~~~r~~~~~~~HiTL~fl----g~~--~~~~~~~l~~~l~~~~~--~~f~l~l~~   75 (179)
T TIGR02258         6 AIDLPPEIREQLSRIQRKLKSP--LDGIKWVPPENLHITLKFL----GEV--DEEQVEELEDALAKIAE--PPFTLKLEG   75 (179)
T ss_pred             EecCCHHHHHHHHHHHHHhhcc--CCCcEECChHHCEEEEEEc----cCC--CHHHHHHHHHHHHHhcC--CCeEEEEee
Confidence            3466776666665554444312  2234556778899999532    112  23333333334444443  468899999


Q ss_pred             EEEcCC----cceEEeeeecCCCChHHHHHHHHHhCCCC--CccCccCceeeeehhhhhcCCC
Q 027572          156 VILTST----GVLLGCWQVISGTDPMTIRAKLRTALPNA--PEKQLYDPAILHTSFARLLGHP  212 (221)
Q Consensus       156 VV~tss----GvlL~cwqv~~g~dp~~iR~~Lr~alP~A--P~kQ~~d~~IlHtTlaRlL~Pp  212 (221)
                      +-.=+.    +++.+  .+....+...|++++++++...  +.+.  .+..-|.||||...+.
T Consensus        76 ~~~F~~~~~~~vl~l--~~~~~~~L~~L~~~l~~~~~~~g~~~~~--~~f~PHiTlar~~~~~  134 (179)
T TIGR02258        76 IGVFGNPKRPRVLWA--GVEQSEELTQLHADLERELAKLGFSKEE--RPFTPHITLARKKSGK  134 (179)
T ss_pred             eeeCCCCCCCeEEEE--eeCCCHHHHHHHHHHHHHHHHcCCCCCC--CCcCCCEEEEEecCCc
Confidence            877544    44322  2444446788889998887543  2122  3588999999987644

This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles.

>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]

Probab=94.24  E-value=0.33  Score=41.44  Aligned_cols=122  Identities=19%  Similarity=0.284  Sum_probs=80.3

Q ss_pred             EEeecCcccchHHHHHHHHhcCCCCCcee-eeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEE
Q 027572           75 NVLYLSPKYSVPISDAVKRIFSPHFDKVI-WFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVL  153 (221)
Q Consensus        75 ~Vl~l~~~~a~~i~~av~~~l~p~~d~~i-w~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cPi~~~l  153 (221)
                      +.+.+|+++++.|.++.+.+....   ++ |+ .++.||+|+-+    +--++...  ++.=++++++++... |+.+.+
T Consensus         5 iAl~~p~~i~~~i~~~~~~~~~~~---~~k~v-~~en~HiTL~f----lGev~e~~--~~~l~~~l~~i~~~~-~f~i~l   73 (180)
T COG1514           5 IALDPPAEIAERLARIRARLKGAR---AIKWV-EPENLHITLKF----LGEVDEDK--ADELIEALARIAAPE-PFPITL   73 (180)
T ss_pred             EEecCCHHHHHHHHHHHHhcCccc---ccccc-cccCceEEEEc----cCCcCchH--HHHHHHHHHHhhcCC-ceEEEE
Confidence            345677788888877777765432   44 55 56679999964    33333332  333337888888888 999999


Q ss_pred             eEEEE-cCCcceEEeeeecCCCC-hHHHHHHHHHhCCCC---CccCccCceeeeehhhhhcC
Q 027572          154 DRVIL-TSTGVLLGCWQVISGTD-PMTIRAKLRTALPNA---PEKQLYDPAILHTSFARLLG  210 (221)
Q Consensus       154 eRVV~-tssGvlL~cwqv~~g~d-p~~iR~~Lr~alP~A---P~kQ~~d~~IlHtTlaRlL~  210 (221)
                      +.+-. -+.+..--.|.=..+++ ...|.+.+++.+=++   |++.   +..=|.|+||+.+
T Consensus        74 ~g~g~F~~~~~~rvi~~~v~~~~~L~~L~~~l~~~~~~~g~~~~~r---~F~PHvTl~r~k~  132 (180)
T COG1514          74 DGAGSFPNPRRPRVIWVGVEETEELRALAEELERALARLGLRPEER---PFVPHVTLARVKS  132 (180)
T ss_pred             eeEcccCCCCCCcEEEEcCCCcHHHHHHHHHHHHHHHhcCCCCCCC---CcCCCEEEEeecc
Confidence            99854 34466666663334433 577777777664444   2233   5788999999997

>PRK15124 2'-5' RNA ligase; Provisional

Probab=94.10  E-value=0.47  Score=39.37  Aligned_cols=122  Identities=13%  Similarity=0.116  Sum_probs=69.0

Q ss_pred             eEEEEe-ecCcccchHHHHHHHHhcCCCCCcee-eeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcc
Q 027572           72 VRANVL-YLSPKYSVPISDAVKRIFSPHFDKVI-WFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPL  149 (221)
Q Consensus        72 VRa~Vl-~l~~~~a~~i~~av~~~l~p~~d~~i-w~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cPi  149 (221)
                      .|+-+. ++|++..+.+.+..++....   ..+ |+ +++.+|+|+.-=.-      .+++.++.-.+++.++  ...|+
T Consensus         5 ~RlFiAl~~p~~~~~~l~~~~~~~~~~---~~~rwv-~~~nlHiTL~FlG~------v~~~~~~~l~~~l~~~--~~~pF   72 (176)
T PRK15124          5 KRLFFAIDLPDEIRQQIIHWRATHFPP---EAGRPV-AAANLHLTLAFLGE------VSAEKQQALSQLAGRI--RQPGF   72 (176)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHHHhccc---cCcccc-cccccEEEEEecCC------CCHHHHHHHHHHHHhc--ccCCe
Confidence            455444 67877777777766555421   124 55 47789999853221      2334444444444444  45789


Q ss_pred             eEEEeEEEEcCCcceEEeee-ecCCC-ChHHHHHHHHHhCCC---CCccCccCceeeeehhhhhcC
Q 027572          150 KIVLDRVILTSTGVLLGCWQ-VISGT-DPMTIRAKLRTALPN---APEKQLYDPAILHTSFARLLG  210 (221)
Q Consensus       150 ~~~leRVV~tssGvlL~cwq-v~~g~-dp~~iR~~Lr~alP~---AP~kQ~~d~~IlHtTlaRlL~  210 (221)
                      .+.++++-.=+..-+|  |- +..+. +...|-+.+++++-.   .+.+-   +..=|-||||..+
T Consensus        73 ~l~l~~~g~Fp~prvl--wlg~~~~~~~L~~L~~~l~~~l~~~G~~~e~r---~f~PHiTLaR~~~  133 (176)
T PRK15124         73 TLTLDDAGQWPRSRVV--WLGMRQPPRGLLQLANMLRSQAARSGCYQSPQ---PFHPHITLLRDAS  133 (176)
T ss_pred             EEEECcccCcCCCCEE--EEEcCCCCHHHHHHHHHHHHHHHHcCCCCCCC---CCCCCEeeccCCC
Confidence            9999988554432232  32 33333 446666666654321   12222   4778999999765

>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7

Probab=92.50  E-value=0.76  Score=38.80  Aligned_cols=129  Identities=19%  Similarity=0.135  Sum_probs=77.6

Q ss_pred             EEEeec-CcccchHHHHHHHHhcCCCCCc-eeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhh------
Q 027572           74 ANVLYL-SPKYSVPISDAVKRIFSPHFDK-VIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAED------  145 (221)
Q Consensus        74 a~Vl~l-~~~~a~~i~~av~~~l~p~~d~-~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~------  145 (221)
                      .+++|+ .+++...+.+.-.+++....+- .-++++++.+|+|+..-+      =.+++|++.=.++++.+...      
T Consensus         4 Fl~ipl~~~~i~~~~~~fq~~v~~~~~~~~~~~~i~~~~lHlTL~vl~------L~~~~~i~~a~~~L~~~~~~i~~~~~   77 (209)
T PF10469_consen    4 FLCIPLNSPEIQEKFKEFQNEVLSKDPGLDESAFIPPEKLHLTLGVLS------LDTDEEIEKAKEALKSLKQEIKDQLQ   77 (209)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhhcCCCCHHHcCCcccceEEEEEee------CCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence            467888 3345555555444455333322 346668999999988663      33455666666666666432      


Q ss_pred             -cCcceEEEeEEEEcCC-----cceEEeeeecC--C-CChHHHHHHHHHhCCCCCccCcc---CceeeeehhhhhcC
Q 027572          146 -LCPLKIVLDRVILTST-----GVLLGCWQVIS--G-TDPMTIRAKLRTALPNAPEKQLY---DPAILHTSFARLLG  210 (221)
Q Consensus       146 -~cPi~~~leRVV~tss-----GvlL~cwqv~~--g-~dp~~iR~~Lr~alP~AP~kQ~~---d~~IlHtTlaRlL~  210 (221)
                       .-|+++.+.-+=.=..     -||-+-  +..  + .....+.+.|++.|-.+-=...-   ....+|.||++.-.
T Consensus        78 ~~~~~~i~l~Gl~~f~~d~~~~~VLya~--v~~~~~~~~L~~l~~~l~~~f~~~Gl~~~~~~~~~~~~H~Tl~n~~~  152 (209)
T PF10469_consen   78 NPPPLKITLKGLGYFNDDPSKARVLYAK--VSEDSNSERLQELANKLRERFQEAGLLVTDDRRFSFKPHITLMNTSY  152 (209)
T ss_pred             CCCCceEEeeechhhCCCCCcceEEEEc--ccccchHHHHHHHHHHHHHHHHHcCCccccccCCCcceEEEEEeccc
Confidence             3788999987765555     566553  433  2 33456666666666554322211   13689999999875

This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes []. This domain carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein []. Binding to the regulatory subunits RI and RII of PKA is mediated via the RI-RII subunit-binding domain at the C terminus.

>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases

Probab=91.88  E-value=0.62  Score=33.67  Aligned_cols=77  Identities=14%  Similarity=0.188  Sum_probs=50.6

Q ss_pred             eecCcccchHHHHHHHHhcCCCCCcee-eeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEeE
Q 027572           77 LYLSPKYSVPISDAVKRIFSPHFDKVI-WFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDR  155 (221)
Q Consensus        77 l~l~~~~a~~i~~av~~~l~p~~d~~i-w~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cPi~~~leR  155 (221)
                      +.+|++..+.+.+..+++-.-..+-++ |. ++..+|+|+--=.--      ++.++.+=.++++.++...-|+.+.+++
T Consensus         1 i~~p~~~~~~L~~l~~~l~~~~~~~~~r~~-~~~~~HiTL~flg~~------~~~~~~~l~~~l~~~~~~~~~f~~~~~~   73 (87)
T PF02834_consen    1 IDLPEEIKEQLNQLQERLRQALPPLGIRWV-RPFNPHITLAFLGEV------PPDQLPELIEALANIASRFPPFTLTVDG   73 (87)
T ss_dssp             EE-THHHHHHHHHHHHHHHHHCCSCTEEEG-SCGGSEEEEEEEEEE------SHHHHHHHHHHHHHHHCCCB-EEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhhhccccCCccc-CCCCCeEEEEeCCCC------CHHHHHHHHHHHHhhhccCCCeEEEEeE
Confidence            356777677666655555422223445 77 999999999654411      1455666667888888888899999999


Q ss_pred             EEEcC
Q 027572          156 VILTS  160 (221)
Q Consensus       156 VV~ts  160 (221)
                      +.+=+
T Consensus        74 ~~~f~   78 (87)
T PF02834_consen   74 FGLFP   78 (87)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            97653

These include bacterial and archaeal 2',5' RNA ligases, and a family of predicted phosphoesterases known as the YjcG family. The 2',5' RNA ligases perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA []. The physiological substrate(s) in prokaryotes may include small 2',5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. This domain contains a conserved HXTX motif which is thought to be important for catalytic activity, as it is in the related enzyme cyclic nucleotide phosphodiesterase (CPDase) []. In 2',5' RNA ligase this domain is duplicated, with the two conserved motifs forming the proposed active site, which is analogous to that of CPDase [].; PDB: 1VGJ_A 1VDX_A 2FYH_A 2D4G_A.

>PF08975 2H-phosphodiest: Domain of unknown function (DUF1868); InterPro: IPR015069 This family consist of hypothetical bacterial proteins

Probab=83.31  E-value=5  Score=32.79  Aligned_cols=63  Identities=17%  Similarity=0.268  Sum_probs=29.1

Q ss_pred             ceeeeeCCCcceEEEeecCCCCCCCCC----------ChHHHHHHHHHHHHHHh--hcCcceEEEeEEEEcCCcceE
Q 027572          101 KVIWFQNSSLYHFSMFHASHHISPVPA----------TEDEIEAEATAVRAVAE--DLCPLKIVLDRVILTSTGVLL  165 (221)
Q Consensus       101 ~~iw~q~~~~yH~TvFHaShh~dP~pa----------t~~e~~~E~~av~~v~~--~~cPi~~~leRVV~tssGvlL  165 (221)
                      ...=+.++++||.|+|---...+=.+.          +-+++.+-  ..+++.+  -.-|+++.+.+.-+.++|.+|
T Consensus        44 ~k~a~lP~sS~HMTVf~Gv~e~~R~~~~WP~~l~~d~~l~~~t~~--~~~rL~~f~~~~~f~m~v~~~~~~p~g~~l  118 (118)
T PF08975_consen   44 DKLAFLPPSSYHMTVFEGVIESRREPGFWPADLPLDAPLQECTRY--FAERLKGFPLPGPFRMRVTRTGMRPQGIVL  118 (118)
T ss_dssp             GGEEE--GGG-EEEEEEEEETT--STTSS-TTS-TT--HHHHHHH--HHHHGGG--------EEE--EEEETTEEEE
T ss_pred             cceEecCcchhhhhhhccccccccCCCCCCCCCCCCCCHHHHHHH--HHHHHhcCCCCCCeEEEEEecccccccccC
Confidence            445568999999999987655443322          11122211  1122222  155889999888999988775

; PDB: 2FSQ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 44/279 (15%), Positives = 76/279 (27%), Gaps = 83/279 (29%)

Query: 3   INLGGITSHSHIPNGERRARLY---DKMARDLDDHGAA--------------FLKQGETS 45
           +NL    S   +   E   +L    D       DH +                LK     
Sbjct: 187 LNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 46  QSLL-LSDI--------F--------TLKDGSVT---PVHKAANPPVRANVLYLSPKYSV 85
             LL L ++        F        T +   VT         +  +  + + L+P    
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV- 303

Query: 86  PISDAVKRIFSPHFDKVIWFQNSSL---------YHFSMFHASHHISPVPATED-----E 131
                 K +      K +  +   L            S+   S  I    AT D      
Sbjct: 304 ------KSLLL----KYLDCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDNWKHVN 351

Query: 132 IEAEATAVRAVAEDLCP---------LKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAK 182
            +   T + +    L P         L +      +  T +L   W  +  +D M +  K
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNK 410

Query: 183 L--RTALPNAPEKQLYDPAI-LHTSFARLLGHPRASPTV 218
           L   + +    EKQ  +  I + + +  L         +
Sbjct: 411 LHKYSLV----EKQPKESTISIPSIYLELKVKLENEYAL 445

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
1vgj_A	184	Hypothetical protein PH0099; alpha+beta, LIGT-like	97.85
2vfk_A	205	AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Hom	97.62
2d4g_A	171	Hypothetical protein BSU11850; beta barrel, alpha	97.17
1jh6_A	189	Cyclic phosphodiesterase; ADP-ribose 1'',2''-cycli	96.69
1iuh_A	198	2'-5' RNA ligase; riken structural genomics/proteo	96.66
2fsq_A	243	ATU0111 protein; alpha-beta barrel, structural gen	93.28

>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A

Probab=97.85  E-value=8.1e-05  Score=58.79  Aligned_cols=125  Identities=11%  Similarity=0.113  Sum_probs=85.1

Q ss_pred             EEeecCcccchHHHHHHHHhcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEe
Q 027572           75 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD  154 (221)
Q Consensus        75 ~Vl~l~~~~a~~i~~av~~~l~p~~d~~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cPi~~~le  154 (221)
                      +.+++|+++.+.+.+.-+++. +. +..+...+|+.+|+|+..-..      .+++++++=.++++++++..-|+.+.++
T Consensus         5 ial~~p~~~~~~l~~~~~~l~-~~-~~~~~~v~~~~lHiTL~flg~------~~~~~~~~l~~~l~~~~~~~~pf~l~l~   76 (184)
T 1vgj_A            5 IAIDVNESVRDSLVRAQDYIG-SK-EAKIKFVERENLHITLKFLGE------ITEEQAEEIKNILKKIAEKYKKHEVKVK   76 (184)
T ss_dssp             EEEECCHHHHHHHHHHHHHHC-SS-SEEEEECCGGGCEEEEEEEES------CCHHHHHHHHHHHHHHHTTSBCEEEEEE
T ss_pred             EEEcCCHHHHHHHHHHHHHHh-hc-CCCcEecCccccEEEEEeecC------CCHHHHHHHHHHHHHHHccCCCeEEEEe
Confidence            456777777777766666654 22 324555688889999975432      2345566666788888888899999999


Q ss_pred             EEEEcCC----cceEEeeeecCCCChHHHHHHHHHhCCCC--CccCccCceeeeehhhhhcCCC
Q 027572          155 RVILTST----GVLLGCWQVISGTDPMTIRAKLRTALPNA--PEKQLYDPAILHTSFARLLGHP  212 (221)
Q Consensus       155 RVV~tss----GvlL~cwqv~~g~dp~~iR~~Lr~alP~A--P~kQ~~d~~IlHtTlaRlL~Pp  212 (221)
                      .+-.=+.    +||-+  .+..+.....|++++++++...  +...   +..-|.||||...+.
T Consensus        77 g~g~F~~~~~p~vl~~--~v~~~~~L~~L~~~l~~~l~~~g~~~~~---~f~PHiTLar~~~~~  135 (184)
T 1vgj_A           77 GIGVFPNPNYIRVIWA--GIENDEIIREMAREIEDELAKLGFKKEG---NFVAHITLGRVKFVK  135 (184)
T ss_dssp             EEEEEECSSSEEEEEE--EEETCHHHHHHHHHHHHHHHTTTCCCCC---CCCCEEEEEEEEEES
T ss_pred             eEeeCCCCCCCcEEEE--EecCCHHHHHHHHHHHHHHHHcCCCCCC---CccceEEEEeecccC
Confidence            9876554    23322  2555555688999998887543  2222   678899999987644

>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A

Probab=97.62  E-value=0.0003  Score=56.70  Aligned_cols=130  Identities=12%  Similarity=0.107  Sum_probs=83.5

Q ss_pred             CeEEEE-eecCc-ccchHHHHHHHHhcCCCCC-ceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhc-
Q 027572           71 PVRANV-LYLSP-KYSVPISDAVKRIFSPHFD-KVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDL-  146 (221)
Q Consensus        71 pVRa~V-l~l~~-~~a~~i~~av~~~l~p~~d-~~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~-  146 (221)
                      +.|+-+ +++|+ ++.+.|.+.-+++..-..+ ..-|+ +++.+|+|+.--.-      .+++++++=.+++++++... 
T Consensus         2 ~~r~Fial~~~~~~~~~~l~~~~~~l~~~~~~~~~~~v-~~~~~HiTL~flg~------~~~~~~~~l~~~l~~~~~~~~   74 (205)
T 2vfk_A            2 QPNYFLSIPITNKKITAGIKVLQNSILRQDNRLTKAMV-GDGSFHITLLVMQL------LNEDEVNIGTDALLELKPFVE   74 (205)
T ss_dssp             CCCEEEEEECCCHHHHHHHHHHHHHHHHHCGGGGGGBC-CTTCCEEEEEEECC------CSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCHHHHHHHHHHHHHHHhcCcchHHHhC-CcCccEEEEEEEEc------CCHHHHHHHHHHHHHHHHHHH
Confidence            356666 78887 6777777666665421011 12354 57789999964422      23455555566677766655 


Q ss_pred             -----CcceEEEeEEEEcCCcceEEeeeecCC---CChHHHHHHHHHhCCCCC--ccCccCceeeeehhhhhcC
Q 027572          147 -----CPLKIVLDRVILTSTGVLLGCWQVISG---TDPMTIRAKLRTALPNAP--EKQLYDPAILHTSFARLLG  210 (221)
Q Consensus       147 -----cPi~~~leRVV~tssGvlL~cwqv~~g---~dp~~iR~~Lr~alP~AP--~kQ~~d~~IlHtTlaRlL~  210 (221)
                           -|+.+.++.+-.=+.+||-+.  +..+   .....|+++++++|..+-  .++ ..+..-|.||||.-.
T Consensus        75 ~~~~~~pf~l~l~g~~~F~~~vl~~~--v~~~~~~~~L~~L~~~l~~~~~~~g~~~~~-~~~f~PHiTlar~~~  145 (205)
T 2vfk_A           75 EILEGKHLTLPFHGIGTFQGQVGFVK--LADGDHVSALLEIAETAKRTFQEKGILAGE-SRTFKPHLTFMKLSK  145 (205)
T ss_dssp             HHTTTSCCEEEEEEEEEETTTEEEEE--ECCSHHHHHHHHHHHHHHHHHHTTTCCBCC-SSCCCCCEEEEEGGG
T ss_pred             HHhCCCCcEEEEechhhCCCcEEEEe--ecccccHHHHHHHHHHHHHHHHHcCCCcCC-CCCcceEEEEEeccc
Confidence                 899999999977766655333  3333   246888888888865432  111 256889999999874

>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}

Probab=97.17  E-value=0.0009  Score=52.26  Aligned_cols=118  Identities=17%  Similarity=0.203  Sum_probs=78.5

Q ss_pred             EEeecCcccchHHHHHHHHhcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEe
Q 027572           75 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD  154 (221)
Q Consensus        75 ~Vl~l~~~~a~~i~~av~~~l~p~~d~~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cPi~~~le  154 (221)
                      +.+.+|++..+.|.+.-+++ .+   ..-|+.+    |+|+..-..      ..+.++++=.+++++++++.-|+++.++
T Consensus         5 iai~~~~~~~~~l~~~~~~~-~~---~~~~v~p----HiTL~f~g~------~~~~~~~~l~~~l~~~~~~~~pf~l~l~   70 (171)
T 2d4g_A            5 IVLFPSKKLQDLANSYRKRY-DP---SYSLIPP----HLTLRASFE------CAEEKADQLVSHLRNIAKESHPLVLKMT   70 (171)
T ss_dssp             EEBCCCHHHHHHHHHHHHHH-CG---GGGTSCS----CBCCSSCEE------CCGGGHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred             EEEeCCHHHHHHHHHHHHHh-Cc---ccCCCCC----eEEeecCCc------CChHHHHHHHHHHHHHHccCCCEEEEEC
Confidence            44566777777776665554 33   1226544    999975432      1233455556788888889999999999


Q ss_pred             EEEEcCCc--ceEEeeeecCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhhcCC
Q 027572          155 RVILTSTG--VLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGH  211 (221)
Q Consensus       155 RVV~tssG--vlL~cwqv~~g~dp~~iR~~Lr~alP~AP~kQ~~d~~IlHtTlaRlL~P  211 (221)
                      ++-.-+.+  |+.+  .+........|++++++++...+.+   .+..-|-||||...+
T Consensus        71 ~~g~F~~~~~vl~l--~~~~~~~L~~L~~~l~~~~~~~~~~---~~f~PHiTLar~~~~  124 (171)
T 2d4g_A           71 KYSSFAPVNNVIYI--KAEPTEELKTLNEKLYTGVLAGEQE---YNFVPHVTVGQNLSD  124 (171)
T ss_dssp             EEEECTTTCCCEEE--EECCCHHHHHHHHHTTSGGGCSCCC---SCCCCEEEEECSCCH
T ss_pred             CcEEeCCCCcEEEE--EccCChHHHHHHHHHHhcccccccC---CCCCCeEEeecCCCH
Confidence            98776533  4433  2444445689999999998765433   357889999997653

>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*

Probab=96.69  E-value=0.0059  Score=49.51  Aligned_cols=119  Identities=12%  Similarity=0.062  Sum_probs=78.0

Q ss_pred             CCCeEEEEeecCcccchHHHHHHHHhcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCc
Q 027572           69 NPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCP  148 (221)
Q Consensus        69 ~~pVRa~Vl~l~~~~a~~i~~av~~~l~p~~d~~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cP  148 (221)
                      +..-|++++..|+++.+.+.+..+++-. ..    |. ++..+|+|+      +.+++...+   .=.+++++++++..|
T Consensus         5 ~~~~~~f~~~pp~~~~~~l~~~~~~l~~-~~----~~-~~~~~HiTL------lG~~~~~~~---~l~~~L~~~a~~~~p   69 (189)
T 1jh6_A            5 KKDVYSVWALPDEESEPRFKKLMEALRS-EF----TG-PRFVPHVTV------AVSAYLTAD---EAKKMFESACDGLKA   69 (189)
T ss_dssp             CCEEEEEEEEECTTTHHHHHHHHHHHHH-HH----TC-CCCCCCEEE------EEEEEECHH---HHHHHHHHHHHTCBC
T ss_pred             CCCcEEEEEECCHHHHHHHHHHHHHHHH-Hc----CC-CCCCCEEEE------eCCCCCCHH---HHHHHHHHHHhhCCC
Confidence            3456788876688777777776655521 11    22 678899999      233333333   335677788888899


Q ss_pred             ceEEEeEEEE--cCCcceEEeeeecCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhh
Q 027572          149 LKIVLDRVIL--TSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARL  208 (221)
Q Consensus       149 i~~~leRVV~--tssGvlL~cwqv~~g~dp~~iR~~Lr~alP~AP~kQ~~d~~IlHtTlaRl  208 (221)
                      +.+.++.+=.  ..-.||-+-  |..+.+...|.+++++++...|.+    +..=|.||||.
T Consensus        70 f~l~l~g~g~~~~~~rvlw~~--v~~~~~L~~L~~~v~~~~g~~~~~----~f~PHlTLar~  125 (189)
T 1jh6_A           70 YTATVDRVSTGTFFFQCVFLL--LQTTPEVMEAGEHCKNHFNCSTTT----PYMPHLSLLYA  125 (189)
T ss_dssp             EEEEEEEEEEEEETTEEEEEE--ECCCHHHHHHHHHHHHHTTCCCCS----CCCCEEEEECC
T ss_pred             eEEEEcceeccCccceEEEEe--ecCCHHHHHHHHHHHHHhCCCCCC----CCCCeEEEEEe
Confidence            9999999865  112232222  334445688999999998665543    57889999985

>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2

Probab=96.66  E-value=0.0059  Score=49.52  Aligned_cols=124  Identities=14%  Similarity=0.180  Sum_probs=77.7

Q ss_pred             EEeecCcccchHHHHHHHHhcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEe
Q 027572           75 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD  154 (221)
Q Consensus        75 ~Vl~l~~~~a~~i~~av~~~l~p~~d~~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cPi~~~le  154 (221)
                      +.+.+|+++.+.|.+.-+++- ... +.=|+. ++.+|+|+..-..      ..++++++=.++++++++..-|+.+.++
T Consensus         5 ial~~p~~~~~~l~~~~~~l~-~~~-~~r~v~-~~~~HiTL~flge------v~~~~~~~l~~~l~~~~~~~~pf~l~l~   75 (198)
T 1iuh_A            5 YAVFLPEEVRAALVEAQTKVR-PFR-GWKPVP-PHQLHLTLLFLGE------RPEEELPDYLALGHRLARLEAPFRARLR   75 (198)
T ss_dssp             EEEECCHHHHHHHHHHHGGGT-TCT-TEEECC-GGGCEEEEEEEEE------CCGGGHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred             EEEeCCHHHHHHHHHHHHHhh-hhc-CCcccC-CCCCEEEEEeCCc------CCHHHHHHHHHHHHHHhccCCCeEEEEc
Confidence            455777776667765554442 211 222655 7779999964322      2234555556788888888999999999


Q ss_pred             EEEEcCC----cceEEeeeecCCCChHHHHHHHHHhCCCC--------CccCccCceeeeehhhhhcCCC
Q 027572          155 RVILTST----GVLLGCWQVISGTDPMTIRAKLRTALPNA--------PEKQLYDPAILHTSFARLLGHP  212 (221)
Q Consensus       155 RVV~tss----GvlL~cwqv~~g~dp~~iR~~Lr~alP~A--------P~kQ~~d~~IlHtTlaRlL~Pp  212 (221)
                      .+-.=+.    .||-+  .+ .......|++++++++...        +...  .+..=|.||||...+.
T Consensus        76 g~g~F~~~~~p~vl~l--~v-~~~~L~~L~~~l~~~l~~~~g~~~~~~~~~~--~~f~PHiTLar~~~~~  140 (198)
T 1iuh_A           76 GTGYFPNEGTPRVWFA--KA-EAEGFLRLAEGLRAGVEELLGEEAVRIPGWD--KPFKPHITLARRKAPA  140 (198)
T ss_dssp             EEEEESSSSSCSEEEE--EE-ECHHHHHHHHHHHHHHHHHHGGGGGGSTTTT--SCCCCEEEEEEESSCC
T ss_pred             ceEECCCCCCCCEEEE--EC-CCHHHHHHHHHHHHHHHHhcCCCcccccCCC--CCCCCcEEeEeccCcc
Confidence            9877665    34422  23 3334677777776665432        1111  3578899999998644

>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4

Probab=93.28  E-value=0.22  Score=43.58  Aligned_cols=152  Identities=15%  Similarity=0.179  Sum_probs=81.5

Q ss_pred             cccceeccCCeeeeecccCCCCeEEEEeecCccc--chHHHHHHHHhcCCCCCceeeeeCCCcceEEEeecCCCCC----
Q 027572           50 LSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKY--SVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHIS----  123 (221)
Q Consensus        50 ~~DlF~~~~g~~~P~l~~~~~pVRa~Vl~l~~~~--a~~i~~av~~~l~p~~d~~iw~q~~~~yH~TvFHaShh~d----  123 (221)
                      ++..|+- +|...|-      |===+|-|++...  ...+.++-+++..-.+.+..=+.++++||.|+|----..+    
T Consensus        27 ~g~Kf~~-~G~~~pF------pGnTvI~~l~~~s~~~~~l~~iq~~L~~~~~~~~~~~lPpsS~HMTvfdgv~e~~r~~~   99 (243)
T 2fsq_A           27 LGSRFSA-EGEFLPE------PGNTVVCHLVEGSQTESAIVSTRQRFLDMPEASQLAFTPVSSLHMTVFQGVIESRRALP   99 (243)
T ss_dssp             BTTTBCT-TSCBCCC------CEEEEEEEBCTTSHHHHHHHHHHHHHHTSGGGGGEEECCGGGCEEEEEEEEETTCCSTT
T ss_pred             cccCCCC-CCCEecC------CCCeEEEecCCCChHHHHHHHHHHHHHhccccCceeeCCchhhhhhhccccccccccCC
Confidence            4666663 7776664      1112345665522  2333332222221112344457799999999997332111    


Q ss_pred             CCCCC---hHHHHHHHHHHH-HHH--hhcCcceEEEeEEEEcCCcceEEeeeecCCCChHHHHHHHHHhCCCCCccCccC
Q 027572          124 PVPAT---EDEIEAEATAVR-AVA--EDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYD  197 (221)
Q Consensus       124 P~pat---~~e~~~E~~av~-~v~--~~~cPi~~~leRVV~tssGvlL~cwqv~~g~dp~~iR~~Lr~alP~AP~kQ~~d  197 (221)
                      .=|+.   +..+..--+.+. ++.  ....|+++.+.-+  .++|+.|.-..-..-.-...+|++|.+++.---+.+  |
T Consensus       100 ~wP~~L~~d~~l~~~~~~~~~~l~~~~~~~p~~~~v~~l--~~~~v~L~Pade~~~~~L~~~R~~l~q~lGi~~p~h--d  175 (243)
T 2fsq_A          100 YWPQTLPLDTPIDAVTDYYRDRLSTFPTLPAFNMRVTGL--RPVGMVMKGATAEDDSIVALWRDTFADFFGYRHPDH--D  175 (243)
T ss_dssp             SSCTTSCTTCCHHHHHHHHHHHGGGCCCCCCCCEEEEEE--ETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCCTTG--G
T ss_pred             CCCccCcccchHHHHHHHHHHHHhcccCCCCeEEEEecc--ccceEEEecCCHHHHHHHHHHHHHHHHHhCCCCCCC--c
Confidence            12211   122322222222 221  2346888888877  455554433211111234689999999887655555  7


Q ss_pred             ceeeeehhhhhcCCC
Q 027572          198 PAILHTSFARLLGHP  212 (221)
Q Consensus       198 ~~IlHtTlaRlL~Pp  212 (221)
                      ..-.|.|||=++.++
T Consensus       176 ~y~fHITLgY~~~~l  190 (243)
T 2fsq_A          176 TYEFHITLSYIVSWF  190 (243)
T ss_dssp             GCCEEEECEEESSCB
T ss_pred             ceEEEEEEEeccCCC
Confidence            899999999888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1iuha_	183	2'-5' RNA ligase LigT {Thermus thermophilus [TaxId	96.59
d1jh6a_	181	tRNA splicing product Appr>p cyclic nucleotide pho	95.52
d2fsqa1	232	Putative phosphoesterase Atu0111 {Agrobacterium tu	95.02

>d1iuha_ d.61.1.2 (A:) 2'-5' RNA ligase LigT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: 2'-5' RNA ligase LigT
domain: 2'-5' RNA ligase LigT
species: Thermus thermophilus [TaxId: 274]

Probab=96.59  E-value=0.0022  Score=48.89  Aligned_cols=126  Identities=13%  Similarity=0.117  Sum_probs=73.7

Q ss_pred             eecCcccchHHHHHHHHhcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEeEE
Q 027572           77 LYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRV  156 (221)
Q Consensus        77 l~l~~~~a~~i~~av~~~l~p~~d~~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cPi~~~leRV  156 (221)
                      |++|++..+.|.+.-+. +.+.. +.=|+ +++.||+|+.--      -..++++++.=.+++++++....|+.+.++++
T Consensus         7 l~~p~~~~~~l~~~~~~-l~~~~-~~r~~-~~~~lHiTL~fl------g~~~~~~~~~l~~~l~~~~~~~~pf~l~~~~~   77 (183)
T d1iuha_           7 VFLPEEVRAALVEAQTK-VRPFR-GWKPV-PPHQLHLTLLFL------GERPEEELPDYLALGHRLARLEAPFRARLRGT   77 (183)
T ss_dssp             EECCHHHHHHHHHHHGG-GTTCT-TEEEC-CGGGCEEEEEEE------EECCGGGHHHHHHHHHHHHHHSCCEEEEEEEE
T ss_pred             EcCCHHHHHHHHHHHHH-ccccc-ccccC-CcccCEEEEEcC------CCCCHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence            45677666666544444 32322 22365 678899999521      12345667777788999999999999999999


Q ss_pred             EEcCCcc-eEEeeeecCCCChHHHHHHHHHhCCCC--------CccCccCceeeeehhhhhcCCCC
Q 027572          157 ILTSTGV-LLGCWQVISGTDPMTIRAKLRTALPNA--------PEKQLYDPAILHTSFARLLGHPR  213 (221)
Q Consensus       157 V~tssGv-lL~cwqv~~g~dp~~iR~~Lr~alP~A--------P~kQ~~d~~IlHtTlaRlL~Pp~  213 (221)
                      -.=+.+. -...|.+..+.+...+..+|++++..+        |+..  .+..=|-||||.=.+++
T Consensus        78 ~~f~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~--r~f~PHITlar~~~~~~  141 (183)
T d1iuha_          78 GYFPNEGTPRVWFAKAEAEGFLRLAEGLRAGVEELLGEEAVRIPGWD--KPFKPHITLARRKAPAP  141 (183)
T ss_dssp             EEESSSSSCSEEEEEEECHHHHHHHHHHHHHHHHHHGGGGGGSTTTT--SCCCCEEEEEEESSCCC
T ss_pred             ccCCCCCCcEEEEEecCChHHHHHHHHHHHHHHHHhhhhccCCCccC--CCcCCCEEEEeEcCCch
Confidence            7655442 222333333333344444444443322        1111  24666889999755443

>d1jh6a_ d.61.1.1 (A:) tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase
domain: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.52  E-value=0.057  Score=40.83  Aligned_cols=114  Identities=11%  Similarity=0.065  Sum_probs=73.2

Q ss_pred             EeecCcccchHHHHHHHHhcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEeE
Q 027572           76 VLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDR  155 (221)
Q Consensus        76 Vl~l~~~~a~~i~~av~~~l~p~~d~~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cPi~~~leR  155 (221)
                      .+-.|++...++.++++++-.. +++. ++ +|   |+|+.--..      .+++   ...+.+++++...-|+.+.+++
T Consensus        12 wl~P~~~~~~~l~~l~~~l~~~-~~~~-~~-~p---HiTL~~~~~------~~~~---~~~~~l~~~~~~~~p~~~~~~~   76 (181)
T d1jh6a_          12 WALPDEESEPRFKKLMEALRSE-FTGP-RF-VP---HVTVAVSAY------LTAD---EAKKMFESACDGLKAYTATVDR   76 (181)
T ss_dssp             EEEECTTTHHHHHHHHHHHHHH-HTCC-CC-CC---CEEEEEEEE------ECHH---HHHHHHHHHHHTCBCEEEEEEE
T ss_pred             EEECCHHHHHHHHHHHHHHHHh-hCCC-CC-CC---eEEEeecCc------CCHH---HHHHHHHHHHhhCCCeEEEecc
Confidence            3334556666666666655211 1111 22 23   999965321      1222   3335566777788899999999


Q ss_pred             EEEcCCcceEEeeeecCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhh
Q 027572          156 VILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARL  208 (221)
Q Consensus       156 VV~tssGvlL~cwqv~~g~dp~~iR~~Lr~alP~AP~kQ~~d~~IlHtTlaRl  208 (221)
                      |..-..+--...+.+....+...+++++++.+.....+.    ..=|.||||.
T Consensus        77 ~~~~~~~~~~v~~~~~~~~~L~~l~~~l~~~~~~~~~~~----f~PHiTLa~~  125 (181)
T d1jh6a_          77 VSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTP----YMPHLSLLYA  125 (181)
T ss_dssp             EEEEEETTEEEEEEECCCHHHHHHHHHHHHHTTCCCCSC----CCCEEEEECC
T ss_pred             cccCCCCceEEEEccCCCHHHHHHHHHHHHhcCcccCCC----CCCeEEEEec
Confidence            987666655556667666677999999999987665554    5568899974

>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: Atu0111-like
domain: Putative phosphoesterase Atu0111
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.02  E-value=0.026  Score=46.94  Aligned_cols=129  Identities=12%  Similarity=0.094  Sum_probs=67.7

Q ss_pred             EEeecCcc--cchHHHHHHHHhcCCCC-CceeeeeCCCcceEEEeecC--------C-CCCC-CCCChHHHHHHHHHHHH
Q 027572           75 NVLYLSPK--YSVPISDAVKRIFSPHF-DKVIWFQNSSLYHFSMFHAS--------H-HISP-VPATEDEIEAEATAVRA  141 (221)
Q Consensus        75 ~Vl~l~~~--~a~~i~~av~~~l~p~~-d~~iw~q~~~~yH~TvFHaS--------h-h~dP-~pat~~e~~~E~~av~~  141 (221)
                      +|-++++.  +...|.++ ++-+.-.. .+..-+-+|++||.|+|=--        + +.+. .-..-+++..+..+  +
T Consensus        38 iI~~i~~~s~~~~~l~~~-q~~l~~~~~~~~~~~LP~sSfHMTLfd~~n~~~r~~~~wP~~l~~d~~~~~~~~~~~~--r  114 (232)
T d2fsqa1          38 VVCHLVEGSQTESAIVST-RQRFLDMPEASQLAFTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAVTDYYRD--R  114 (232)
T ss_dssp             EEEEBCTTSHHHHHHHHH-HHHHHTSGGGGGEEECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHHHHHHHH--H
T ss_pred             EEEecCCCchHHHHHHHH-HHHHHhcCcccceeeCChhhhhHHHhcccccccccCCCCCccCCcccCHHHHHHHHHH--H
Confidence            44466553  22344333 33333333 24445669999999999321        1 1222 22234455555433  3


Q ss_pred             HHhh--cCcceEEEeEEEEcCCcceEEeeeecCC--CChHHHHHHHHHhCCCCCccCccCceeeeehhhhhcCCC
Q 027572          142 VAED--LCPLKIVLDRVILTSTGVLLGCWQVISG--TDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHP  212 (221)
Q Consensus       142 v~~~--~cPi~~~leRVV~tssGvlL~cwqv~~g--~dp~~iR~~Lr~alP~AP~kQ~~d~~IlHtTlaRlL~Pp  212 (221)
                      +...  .+++++.+..  +.+.|++|.-.  ...  .-...+|++|.+.+.-..+.+  |+...|.|||=++...
T Consensus       115 l~~~~~~~~~~~~~~~--~~~~~v~L~p~--~e~d~~~L~~~R~~l~~l~gi~~~~h--~~Y~fHITLaY~l~~l  183 (232)
T d2fsqa1         115 LSTFPTLPAFNMRVTG--LRPVGMVMKGA--TAEDDSIVALWRDTFADFFGYRHPDH--DTYEFHITLSYIVSWF  183 (232)
T ss_dssp             GGGCCCCCCCCEEEEE--EETTEEEEEES--SHHHHHHHHHHHHHHHHHHTCCCTTG--GGCCEEEECEEESSCB
T ss_pred             HhcCCCCcceEEEEec--ccccEEEEecC--CHHHHHHHHHHHHHHHHHhccCCCCC--ceeEEEEEEEeccCCC
Confidence            3332  3345554432  22333332211  110  114568889999887776666  7899999999998743