Citrus Sinensis ID: 027602

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MTGVLVSTLFLFQLLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFTDTKLVSVITFPDTC
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEccccccccccccHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccEEEEEccccccccccccccEEEcccccccccccHHHcccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcHHHHHHHc
Coil and Loop (DISEMBL)
MTGVLVSTLFLFQLLVIAAISMSLcngnsyhvgclESEREVLLRFKQDlqdpsnrlaswigdgdcclwagVICDNVTGHIlelnlrnpfnyyvqpdqfeanprsmlvgkvnpslldlehlsyldlsfndfqgvqiprfigsmgnQKYLNLLGsqfggviphqlgnlsslryldlsrnFLYVVNFgwlsglsflehldfsttrkmgftdtkLVSVITFPDTC
Flexible Loop (DISEMBL)
MTGVLVSTLFLFQLLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSttrkmgftdtklvsvitfpdtc
Low Complexity Region (SEG)
MTGVLVSTLFLFQLLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPslldlehlsyldlsFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFTDTKLVSVITFPDTC
Disordered region (IsUnstruct)
***VLVSTLFLFQLLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFTDTKLVSVITF****
Disordered Region (DISOPRED)
******STLFLFQLLVIAAISMSLC************EREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFTDTKLVSVITFPDTC
Disordered Region (DISEMBL)
MTGVLVSTLFLFQLLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFTDTKLVSVITFPDTC
Disordered Region (DISPRO)
*TGVLVSTLFLFQLLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFTDTKLVSVITFPDTC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTGVLVSTLFLFQLLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFTDTKLVSVITFPDTC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.805	0.210	0.303	3e-14
Q9LRT1	1016	Probably inactive leucine	no	no	0.882	0.191	0.336	2e-13
Q00874	372	DNA-damage-repair/tolerat	no	no	0.723	0.430	0.298	4e-13
Q05091	330	Polygalacturonase inhibit	N/A	no	0.800	0.536	0.297	2e-12
O82318	960	Probably inactive leucine	no	no	0.791	0.182	0.335	3e-12
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.561	0.112	0.352	6e-11
A7PW81	333	Polygalacturonase inhibit	no	no	0.651	0.432	0.329	1e-10
C0LGT6	1031	LRR receptor-like serine/	no	no	0.692	0.148	0.325	3e-10
Q9S7I6	1151	LRR receptor-like serine/	no	no	0.633	0.121	0.316	6e-10
Q42371	976	LRR receptor-like serine/	no	no	0.746	0.169	0.292	8e-10

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 33/211 (15%)

Query: 4   VLVSTLFLFQLLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSNR-------- 55
           V  S + +F  L++ +++ S     S H  C + +R+ LL F+ +   P N         
Sbjct: 10  VFSSRIIIFLSLLVHSLASS-----SPHF-CRDDQRDALLEFRGEF--PINASWHIMNQW 61

Query: 56  LASWIGDGDCCLWAGVICDNVTGHILELNLRNPF-NYYVQPDQFEANPRSMLVGKVNPSL 114
              W    DCCLW GV C++ +G ++ L++ N F N Y+               K N SL
Sbjct: 62  RGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYL---------------KTNSSL 106

Query: 115 LDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDL 174
             L++L +LDL+  +  G +IP  +G++ +   +NL  ++F G IP  +GNL+ LR+L L
Sbjct: 107 FKLQYLRHLDLTNCNLYG-EIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLIL 165

Query: 175 SRNFLYVVNFGWLSGLSFLEHLDFSTTRKMG 205
           + N L       L  LS L +L+  + R +G
Sbjct: 166 ANNVLTGEIPSSLGNLSRLVNLELFSNRLVG 196

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 101/208 (48%), Gaps = 13/208 (6%)

Query: 8   TLFLFQLLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSNRLASWIGDGDC-C 66
           T+  F L +   +  SL NG++  +  L  +   L+ FK DL DP + L SW  D +  C
Sbjct: 7   TMISFTLFLTLTMMSSLINGDTDSIQ-LNDDVLGLIVFKSDLNDPFSHLESWTEDDNTPC 65

Query: 67  LWAGVICDNVTGHILELN-----LRNPFNYYVQPDQ---FEANPRSMLVGKVNPSLLDLE 118
            W+ V C+  T  ++EL+     L    N  +Q  Q     +   +   G +N +L +  
Sbjct: 66  SWSYVKCNPKTSRVIELSLDGLALTGKINRGIQKLQRLKVLSLSNNNFTGNIN-ALSNNN 124

Query: 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL-GNLSSLRYLDLSRN 177
           HL  LDLS N+  G QIP  +GS+ + ++L+L G+ F G +   L  N SSLRYL LS N
Sbjct: 125 HLQKLDLSHNNLSG-QIPSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHN 183

Query: 178 FLYVVNFGWLSGLSFLEHLDFSTTRKMG 205
            L       L   S L  L+ S  R  G
Sbjct: 184 HLEGQIPSTLFRCSVLNSLNLSRNRFSG 211

Arabidopsis thaliana (taxid: 3702)

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 91/171 (53%), Gaps = 11/171 (6%)

Query: 34  CLESEREVLLRFKQDLQDPS-NRLASWIGDGDCCL-WAGVICDNVTGHILELNLRNPFNY 91
           C   ++  L  FK  L +P+     +W  + DCC  W G+ CD  +G + +++LR     
Sbjct: 27  CSPKDQTALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPDSGRVTDISLRGESED 86

Query: 92  YVQPDQFEANPRS-MLVGKVNPSLLDLEHLSYLDLSFNDFQGV--QIPRFIGSMGNQKYL 148
            +    F+   RS  + G ++P++ DL  L+ L L+  D++G+  +IP  I S+ + + L
Sbjct: 87  AI----FQKAGRSGYMSGSIDPAVCDLTALTSLVLA--DWKGITGEIPPCITSLASLRIL 140

Query: 149 NLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           +L G++  G IP ++G LS L  L+L+ N +       L+ L  L+HL+ +
Sbjct: 141 DLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSLIELKHLELT 191

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 87/198 (43%), Gaps = 21/198 (10%)

Query: 34  CLESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNL-------R 86
           C   +++VLL+ K+   DP   LASW  D DCC W  V CD+ T  I  L +       +
Sbjct: 27  CNPDDKKVLLQIKKAFGDPY-VLASWKSDTDCCDWYCVTCDSTTNRINSLTIFAGQVSGQ 85

Query: 87  NPFNY----YVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSM 142
            P       Y++  +F   P   L G + P++  L+ L  L LS+ +  G  +P F+  +
Sbjct: 86  IPALVGDLPYLETLEFHKQPN--LTGPIQPAIAKLKGLKSLRLSWTNLSG-SVPDFLSQL 142

Query: 143 GNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFL---YVVNFGWLSGLS---FLEHL 196
            N  +L+L  +   G IP  L  L +L  L L RN L     ++FG   G     +L H 
Sbjct: 143 KNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIPISFGQFIGNVPDLYLSHN 202

Query: 197 DFSTTRKMGFTDTKLVSV 214
             S      F      S+
Sbjct: 203 QLSGNIPTSFAQMDFTSI 220

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Pyrus communis (taxid: 23211)

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 94/191 (49%), Gaps = 16/191 (8%)

Query: 34  CLES-EREVLLRFKQDLQDPSNRLASW--IGDGDCCLWAGVICDNVTGHI-LELNLRNPF 89
           CL + E E+LL FK  +QDP   L+SW      D CLW+GV+C+N++  + L+L+ +N  
Sbjct: 26  CLHANELELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCNNISRVVSLDLSGKNMS 85

Query: 90  NYYVQPDQFEAN-------PRSMLVGKVNPSLLDLE--HLSYLDLSFNDFQGVQIPRFIG 140
              +    F            + L G +   +       L YL+LS N+F G  IPR  G
Sbjct: 86  GQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSG-SIPR--G 142

Query: 141 SMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFST 200
            + N   L+L  + F G I + +G  S+LR LDL  N L     G+L  LS LE L  ++
Sbjct: 143 FLPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLAS 202

Query: 201 TRKMGFTDTKL 211
            +  G    +L
Sbjct: 203 NQLTGGVPVEL 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 67/142 (47%), Gaps = 18/142 (12%)

Query: 38  EREVLLRFKQDLQDPSNRLASW-IGDGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPD 96
           E + LL  K    D    L +W   D   C W GV+C N               Y   P+
Sbjct: 30  EGQYLLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSN---------------YSSDPE 74

Query: 97  QFEANPRSM-LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQF 155
               N  SM L GK++PS+  L HL  LDLS+N   G +IP+ IG+  + + L L  +QF
Sbjct: 75  VLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSG-KIPKEIGNCSSLEILKLNNNQF 133

Query: 156 GGVIPHQLGNLSSLRYLDLSRN 177
            G IP ++G L SL  L +  N
Sbjct: 134 DGEIPVEIGKLVSLENLIIYNN 155

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A7PW81|PGIP_VITVI Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 11/155 (7%)

Query: 34  CLESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNLRNPFNYYV 93
           C   +++VLL+ K+ L +P   LASW  + DCC W  V CD  T  I  L + +      
Sbjct: 30  CNPKDKKVLLQIKKALDNPY-ILASWNPNTDCCGWYCVECDLTTHRINSLTIFSGQLSGQ 88

Query: 94  QPDQFEANP---------RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGN 144
            PD     P          S L G++ P++  L+HL  + LS+ +  G  +P F   + N
Sbjct: 89  IPDAVGDLPFLETLIFRKLSNLTGQIPPAIAKLKHLKMVRLSWTNLSG-PVPAFFSELKN 147

Query: 145 QKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFL 179
             YL+L  +   G IP  L  L +L  L L RN L
Sbjct: 148 LTYLDLSFNNLSGPIPGSLSLLPNLGALHLDRNHL 182

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Vitis vinifera (taxid: 29760)

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 78/172 (45%), Gaps = 19/172 (11%)

Query: 36  ESEREVLLRFKQDLQDPSNR--LASWIGDGDCCLWAGVICDNVTGHILELNLRNPFNYYV 93
           E++ + LL FK  + + + R  LASW      C W GV C      ++ LNL        
Sbjct: 29  ETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNL-------- 80

Query: 94  QPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGS 153
               F+      L G ++PS+ +L  L  L+L+ N F G  IP+ +G +   +YLN+  +
Sbjct: 81  --GGFK------LTGVISPSIGNLSFLRLLNLADNSF-GSTIPQKVGRLFRLQYLNMSYN 131

Query: 154 QFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMG 205
              G IP  L N S L  +DLS N L       L  LS L  LD S     G
Sbjct: 132 LLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTG 183

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9S7I6|RPK2_ARATH LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 75/161 (46%), Gaps = 21/161 (13%)

Query: 36  ESEREVLLRFKQDLQDPSNRLASWIGDG-DCCLWAGVICDNVTGHILELN---------L 85
           +S++ VLLRFK+ + DP + LASW+ +  D C W GV CD+ +  ++ LN          
Sbjct: 44  DSDKSVLLRFKKTVSDPGSILASWVEESEDYCSWFGVSCDS-SSRVMALNISGSGSSEIS 102

Query: 86  RNPFN---------YYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIP 136
           RN F          Y     +        L G +   ++ L  L  L L FN F G +IP
Sbjct: 103 RNRFTCGDIGKFPLYGFGVRRDCTGNHGALAGNLPSVIMSLTGLRVLSLPFNSFSG-EIP 161

Query: 137 RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRN 177
             I  M   + L+L G+   G +P Q   L +LR ++L  N
Sbjct: 162 VGIWGMEKLEVLDLEGNLMTGSLPDQFTGLRNLRVMNLGFN 202

Key regulator of anther development (e.g. lignification pattern), including tapetum degradation during pollen maturation (e.g. germination capacity). Together with RPK1, required for pattern formation along the radial axis (e.g. the apical embryonic domain cell types that generate cotyledon primordia), and the apical-basal axis (e.g. differentiation of the basal pole during early embryogenesis).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 63.9 bits (154), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 88/198 (44%), Gaps = 33/198 (16%)

Query: 10  FLFQLLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSNRLASWIGD--GDCCL 67
           FLF L ++A ++                E   LL  K+  +D +N L  W      D C+
Sbjct: 12  FLFCLSLVATVT--------------SEEGATLLEIKKSFKDVNNVLYDWTTSPSSDYCV 57

Query: 68  WAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSF 127
           W GV C+NVT +++ LNL +  N               L G+++P++ DL+ L  +DL  
Sbjct: 58  WRGVSCENVTFNVVALNLSD-LN---------------LDGEISPAIGDLKSLLSIDLRG 101

Query: 128 NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWL 187
           N   G QIP  IG   + + L+L  ++  G IP  +  L  L  L L  N L       L
Sbjct: 102 NRLSG-QIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTL 160

Query: 188 SGLSFLEHLDFSTTRKMG 205
           S +  L+ LD +  +  G
Sbjct: 161 SQIPNLKILDLAQNKLSG 178

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
350284745	976	receptor-like protein [Malus x domestica	0.855	0.193	0.560	6e-51
350284765	982	receptor-like protein [Malus sieversii]	0.904	0.203	0.532	3e-49
350284755	982	receptor-like protein [Malus micromalus]	0.904	0.203	0.532	3e-49
350284763	982	receptor-like protein [Malus micromalus]	0.904	0.203	0.527	1e-48
209970609	1041	AL07-2p [Malus floribunda]	0.864	0.183	0.519	3e-48
350284769	1041	receptor-like protein [Malus x domestica	0.864	0.183	0.514	6e-48
209970631	962	HcrVf4 [Malus floribunda]	0.864	0.198	0.533	1e-47
350284761	915	receptor-like protein [Malus micromalus]	0.864	0.208	0.533	1e-47
14330718	915	HcrVf3 protein [Malus floribunda]	0.864	0.208	0.533	1e-47
350284753	915	receptor-like protein [Malus micromalus]	0.864	0.208	0.533	1e-47

>gi|350284745|gb|AEQ27744.1| receptor-like protein [Malus x domestica]

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 115/205 (56%), Positives = 140/205 (68%), Gaps = 16/205 (7%)

Query: 1   MTGVLVSTLFLFQLLVIAAISMS--LCNGN-SYHVGCLESEREVLLRFKQDLQDPSNRLA 57
           M   +   L L + L IA I+ S  LCNGN S+   C ESER+ LL FKQDL+DP+NRLA
Sbjct: 1   MERTMRVVLLLIRFLAIATITFSIGLCNGNPSWPPLCKESERQSLLMFKQDLKDPANRLA 60

Query: 58  SWIG--DGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLL 115
           SW+   D DCC W GV+CD++TGHI EL+L N   Y            S   GK+NPSLL
Sbjct: 61  SWVAEEDSDCCSWTGVVCDHMTGHIRELHLNNSEPYL----------ESSFGGKINPSLL 110

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS 175
            L+HL+YLDLS N+FQG QIP F GSM +  +LNL  S+FGGVIPH+LGNL+SLRYL+LS
Sbjct: 111 GLKHLNYLDLSNNNFQGTQIPSFFGSMTSLTHLNLGHSEFGGVIPHKLGNLTSLRYLNLS 170

Query: 176 RNF-LYVVNFGWLSGLSFLEHLDFS 199
           R + L V N  W+SGLS L+HLD S
Sbjct: 171 RLYDLKVENLQWISGLSLLKHLDLS 195

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284765|gb|AEQ27754.1| receptor-like protein [Malus sieversii]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/216 (53%), Positives = 142/216 (65%), Gaps = 16/216 (7%)

Query: 1   MTGVLVSTLFLFQLLVIAAISMS--LCNGNS-YHVGCLESEREVLLRFKQDLQDPSNRLA 57
           M   +   L L + L IA I+ S  LCNGN  +   C ESER+ LL FKQDL+DP+NRLA
Sbjct: 1   MERTMRVVLLLIRFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPANRLA 60

Query: 58  SWIG--DGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLL 115
           SW+   D DCC W GV+CD+ TGHI EL+L N  ++      FE    S   GK+NPSLL
Sbjct: 61  SWVAEEDSDCCSWTGVVCDHTTGHIHELHLNNTDSFL----DFE----SSFGGKINPSLL 112

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS 175
            L+HL++LDLS N+F G QIP F GSM + K+LNL  S FGGVIPH+LGNLSSLRYL+LS
Sbjct: 113 SLKHLNFLDLSNNNFNGTQIPSFFGSMTSLKHLNLAYSVFGGVIPHKLGNLSSLRYLNLS 172

Query: 176 RNF---LYVVNFGWLSGLSFLEHLDFSTTRKMGFTD 208
             +   L V N  W+SGLS L+HLD S+      +D
Sbjct: 173 SFYGSNLKVENIQWISGLSLLKHLDLSSVNLSKASD 208

Source: Malus sieversii

Species: Malus sieversii

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284755|gb|AEQ27749.1| receptor-like protein [Malus micromalus]

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/216 (53%), Positives = 142/216 (65%), Gaps = 16/216 (7%)

Query: 1   MTGVLVSTLFLFQLLVIAAISMS--LCNGN-SYHVGCLESEREVLLRFKQDLQDPSNRLA 57
           M   +   L L + L IA I+ S  LCNGN  +   C ESER+ LL FKQDL+DP+NRLA
Sbjct: 1   MERTMRVVLLLIRFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPANRLA 60

Query: 58  SWIG--DGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLL 115
           SW+   D DCC W GV+CD+ TGHI EL+L N  ++      FE    S   GK+NPSLL
Sbjct: 61  SWVAEEDSDCCSWTGVVCDHTTGHIHELHLNNTDSFL----DFE----SSFGGKINPSLL 112

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS 175
            L+HL++LDLS N+F G QIP F GSM + K+LNL  S FGGVIPH+LGNLSSLRYL+LS
Sbjct: 113 SLKHLNFLDLSNNNFNGTQIPSFFGSMTSLKHLNLAYSVFGGVIPHKLGNLSSLRYLNLS 172

Query: 176 RNF---LYVVNFGWLSGLSFLEHLDFSTTRKMGFTD 208
             +   L V N  W+SGLS L+HLD S+      +D
Sbjct: 173 SFYGSNLKVENIQWISGLSLLKHLDLSSVNLSKASD 208

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284763|gb|AEQ27753.1| receptor-like protein [Malus micromalus]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 114/216 (52%), Positives = 141/216 (65%), Gaps = 16/216 (7%)

Query: 1   MTGVLVSTLFLFQLLVIAAISMS--LCNGN-SYHVGCLESEREVLLRFKQDLQDPSNRLA 57
           M   +   L L + L IA I+ S  LCNGN  +   C ESER+ LL FKQDL+DP+NRLA
Sbjct: 1   MERTMRVVLLLIRFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPANRLA 60

Query: 58  SWIG--DGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLL 115
           SW+   D DCC W GV+CD+ TGHI EL+L N  ++      FE    S   GK+NPSLL
Sbjct: 61  SWVAEEDSDCCSWTGVVCDHTTGHIHELHLNNTDSFL----DFE----SSFGGKINPSLL 112

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS 175
            L+HL++LDLS N+F G QIP F GSM + K+LNL  S FGGVIPH+LGNLSSLRYL+LS
Sbjct: 113 SLKHLNFLDLSNNNFNGAQIPSFFGSMTSLKHLNLAYSVFGGVIPHKLGNLSSLRYLNLS 172

Query: 176 RNF---LYVVNFGWLSGLSFLEHLDFSTTRKMGFTD 208
             +   L V N  W+SGL  L+HLD S+      +D
Sbjct: 173 SFYGSNLKVENIQWISGLPLLKHLDLSSVNLSKASD 208

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970609|gb|ACJ03067.1| AL07-2p [Malus floribunda]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/210 (51%), Positives = 140/210 (66%), Gaps = 19/210 (9%)

Query: 1   MTGVLVSTLFLFQLLVIAAI--SMSLCNGN-SYHVGCLESEREVLLRFKQDLQDPSNRLA 57
           M   +   L L + L  A I  S++LCNGN  +   C ESER+ LL FKQDL+DP+NRLA
Sbjct: 1   MERTMRVVLLLIRFLAFATITFSIALCNGNPGWPPLCKESERQALLMFKQDLKDPANRLA 60

Query: 58  SWIG--DGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLL 115
           SW+   D DCC W GV+CD++TGHI EL+L N   Y+          +S   GK+NPSLL
Sbjct: 61  SWVAEEDSDCCSWTGVVCDHITGHIHELHLNNTDRYF--------GFKSSFGGKINPSLL 112

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS 175
            L+HL+YLDLS+N+F+  QIP F GSM +  +LNL  S+F G+IPH+LGNLSSLRYL+L+
Sbjct: 113 SLKHLNYLDLSYNNFRTTQIPSFFGSMTSLTHLNLGHSKFYGIIPHKLGNLSSLRYLNLN 172

Query: 176 ------RNFLYVVNFGWLSGLSFLEHLDFS 199
                 R+ L V N  W+SGLS L+HLD S
Sbjct: 173 SSYNFYRSTLQVENLQWISGLSLLKHLDLS 202

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284769|gb|AEQ27756.1| receptor-like protein [Malus x domestica]

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 108/210 (51%), Positives = 139/210 (66%), Gaps = 19/210 (9%)

Query: 1   MTGVLVSTLFLFQLLVIAAI--SMSLCNGNS-YHVGCLESEREVLLRFKQDLQDPSNRLA 57
           M   +   L L + L  A I  S++LCNGN  +   C ESER+ LL FKQDL+DP+NRLA
Sbjct: 1   MERTMRVVLLLIRFLAFATITFSIALCNGNPGWPPLCKESERQALLMFKQDLKDPANRLA 60

Query: 58  SWIG--DGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLL 115
           SW+   D DCC W GV+CD++TGHI EL+L N   Y+          +S   G++NPSLL
Sbjct: 61  SWVAEEDSDCCSWTGVVCDHITGHIHELHLNNTDRYF--------GFKSSFGGRINPSLL 112

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS 175
            L+HL+YLDLS+N+F   QIP F GSM +  +LNL  S+F G+IPH+LGNLSSLRYL+L+
Sbjct: 113 SLKHLNYLDLSYNNFSTTQIPSFFGSMTSLTHLNLGQSKFYGIIPHKLGNLSSLRYLNLN 172

Query: 176 RNF------LYVVNFGWLSGLSFLEHLDFS 199
            +F      L V N  W+SGLS L+HLD S
Sbjct: 173 SSFNFYRSTLQVENLQWISGLSLLKHLDLS 202

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970631|gb|ACJ03074.1| HcrVf4 [Malus floribunda]

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/208 (53%), Positives = 138/208 (66%), Gaps = 17/208 (8%)

Query: 1   MTGVLVSTLFLFQLLVIAAISMS--LCNGNS-YHVGCLESEREVLLRFKQDLQDPSNRLA 57
           M   +   + L + L IA I+ S  LCNGN  +   C ESER+ LL FKQDL+DP+NRLA
Sbjct: 48  MERTMRVVILLTRFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPTNRLA 107

Query: 58  SWIG----DGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPS 113
           SW+     D DCC W GV+CD+ TGHI EL+L N        D F  + +S   GK+NPS
Sbjct: 108 SWVAEEDSDSDCCSWTGVVCDHTTGHIHELHLNN-------TDPF-LDLKSSFGGKINPS 159

Query: 114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLD 173
           LL L+HL++LDLS N F   QIP F GSM +  +LNL  S+FGG+IPH+LGNLSSLRYL+
Sbjct: 160 LLSLKHLNFLDLSNNYFYPTQIPSFFGSMTSLTHLNLAYSRFGGIIPHKLGNLSSLRYLN 219

Query: 174 LSRNFLY--VVNFGWLSGLSFLEHLDFS 199
           LS N +Y  V N  W+SGLS L+HLD S
Sbjct: 220 LSSNSIYLKVENLQWISGLSLLKHLDLS 247

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284761|gb|AEQ27752.1| receptor-like protein [Malus micromalus]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/208 (53%), Positives = 138/208 (66%), Gaps = 17/208 (8%)

Query: 1   MTGVLVSTLFLFQLLVIAAISMS--LCNGNS-YHVGCLESEREVLLRFKQDLQDPSNRLA 57
           M   +   + L + L IA I+ S  LCNGN  +   C ESER+ LL FKQDL+DP+NRLA
Sbjct: 1   MERTMRVVILLTRFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPTNRLA 60

Query: 58  SWIG----DGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPS 113
           SW+     D DCC W GV+CD+ TGHI EL+L N        D F  + +S   GK+NPS
Sbjct: 61  SWVAEEDSDSDCCSWTGVVCDHTTGHIHELHLNN-------TDPF-LDLKSSFGGKINPS 112

Query: 114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLD 173
           LL L+HL++LDLS N F   QIP F GSM +  +LNL  S+FGG+IPH+LGNLSSLRYL+
Sbjct: 113 LLSLKHLNFLDLSNNYFYPTQIPSFFGSMTSLTHLNLAYSRFGGIIPHKLGNLSSLRYLN 172

Query: 174 LSRNFLY--VVNFGWLSGLSFLEHLDFS 199
           LS N +Y  V N  W+SGLS L+HLD S
Sbjct: 173 LSSNSIYLKVENLQWISGLSLLKHLDLS 200

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14330718|emb|CAC40827.1| HcrVf3 protein [Malus floribunda]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/208 (53%), Positives = 138/208 (66%), Gaps = 17/208 (8%)

Query: 1   MTGVLVSTLFLFQLLVIAAISMS--LCNGNS-YHVGCLESEREVLLRFKQDLQDPSNRLA 57
           M   +   + L + L IA I+ S  LCNGN  +   C ESER+ LL FKQDL+DP+NRLA
Sbjct: 1   MERTMRVVILLTRFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPTNRLA 60

Query: 58  SWIG----DGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPS 113
           SW+     D DCC W GV+CD+ TGHI EL+L N        D F  + +S   GK+NPS
Sbjct: 61  SWVAEEDSDSDCCSWTGVVCDHTTGHIHELHLNNT-------DPF-LDLKSSFGGKINPS 112

Query: 114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLD 173
           LL L+HL++LDLS N F   QIP F GSM +  +LNL  S+FGG+IPH+LGNLSSLRYL+
Sbjct: 113 LLSLKHLNFLDLSNNYFYPTQIPSFFGSMTSLTHLNLAYSRFGGIIPHKLGNLSSLRYLN 172

Query: 174 LSRNFLY--VVNFGWLSGLSFLEHLDFS 199
           LS N +Y  V N  W+SGLS L+HLD S
Sbjct: 173 LSSNSIYLKVENLQWISGLSLLKHLDLS 200

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284753|gb|AEQ27748.1| receptor-like protein [Malus micromalus]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/208 (53%), Positives = 138/208 (66%), Gaps = 17/208 (8%)

Query: 1   MTGVLVSTLFLFQLLVIAAISMS--LCNGNS-YHVGCLESEREVLLRFKQDLQDPSNRLA 57
           M   +   + L + L IA I+ S  LCNGN  +   C ESER+ LL FKQDL+DP+NRLA
Sbjct: 1   MERTMRVVILLTRFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPTNRLA 60

Query: 58  SWIG----DGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPS 113
           SW+     D DCC W GV+CD+ TGHI EL+L N        D F  + +S   GK+NPS
Sbjct: 61  SWVAEEDSDSDCCSWTGVVCDHTTGHIHELHLNN-------TDPF-LDLKSSFGGKINPS 112

Query: 114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLD 173
           LL L+HL++LDLS N F   QIP F GSM +  +LNL  S+FGG+IPH+LGNLSSLRYL+
Sbjct: 113 LLSLKHLNFLDLSNNYFYPTQIPSFFGSMTSLTHLNLAYSRFGGIIPHKLGNLSSLRYLN 172

Query: 174 LSRNFLY--VVNFGWLSGLSFLEHLDFS 199
           LS N +Y  V N  W+SGLS L+HLD S
Sbjct: 173 LSSNSIYLKVENLQWISGLSLLKHLDLS 200

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.891	0.217	0.369	1.3e-27
TAIR|locus:2182260	371	AT5G12940 [Arabidopsis thalian	0.832	0.495	0.294	6.6e-14
TAIR|locus:2091871	365	AT3G20820 [Arabidopsis thalian	0.769	0.465	0.287	2.2e-12
TAIR|locus:2043540	960	AT2G25790 [Arabidopsis thalian	0.787	0.181	0.312	3.6e-12
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.647	0.166	0.283	7.9e-12
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.660	0.163	0.316	1.8e-11
TAIR|locus:2169404	330	PGIP2 "polygalacturonase inhib	0.877	0.587	0.268	3.6e-11
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.882	0.230	0.262	4.5e-11
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.805	0.203	0.306	4.7e-11
TAIR|locus:2091260	372	DRT100 "DNA-DAMAGE REPAIR/TOLE	0.723	0.430	0.269	4.9e-11

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 78/211 (36%), Positives = 113/211 (53%)

Query:    10 FLFQLLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWA 69
             F    L++  +  +L  G++    C+ +ER+ LL F+  L D S+RL SW G  DCC W 
Sbjct:     9 FFISFLILILLLKNLNYGSAASPKCISTERQALLTFRAALTDLSSRLFSWSGP-DCCNWP 67

Query:    70 GVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPXXXXXXXXXXXXXXFND 129
             GV+CD  T H+++++LRNP +  V+ D+++   R  L GK++P               ND
Sbjct:    68 GVLCDARTSHVVKIDLRNP-SQDVRSDEYK---RGSLRGKIHPSLTQLKFLSYLDLSSND 123

Query:   130 FQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDL-SRNF-------LYV 181
             F  ++IP FIG + + +YLNL  S F G IP  LGNLS L  LDL + +F       L  
Sbjct:   124 FNELEIPEFIGQIVSLRYLNLSSSSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLRA 183

Query:   182 VNFGWLSGLSF-LEHLDFSTTRKMGFTDTKL 211
              N  WLS LS  L++L+       G  +T L
Sbjct:   184 SNLRWLSSLSSSLKYLNMGYVNLSGAGETWL 214

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2182260 AT5G12940 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 6.6e-14, P = 6.6e-14
 Identities = 58/197 (29%), Positives = 93/197 (47%)

Query:    14 LLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPS-NRLASWIGDGDCCL-WAGV 71
             ++++  + + L    + H  CL S+R  LL F+  L +P      +W G  DCC  W GV
Sbjct:     8 VILLTNVVVFLLLSTTVH-SCLPSDRAALLEFRAKLNEPYIGVFNTWKGL-DCCKGWYGV 65

Query:    72 ICDNVTGHILELNLRNPFNYYVQPDQFEANPRS-MLVGKVNPXXXXXXXXXXXXXXFNDF 130
              CD  T  +  + LR        P  F+   RS ++ G ++P                D+
Sbjct:    66 SCDPNTRRVAGITLRGESE---DP-LFQKAKRSGLMTGSISPSICKLTRLSGIIIA--DW 119

Query:   131 QGVQ--IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLS 188
             +G+   IP  I ++   ++L+L+G++F GVIP  +G L  L+ L+L+ N LY V    ++
Sbjct:   120 KGISGVIPSCIENLPFLRHLDLVGNKFSGVIPANIGKLLRLKVLNLADNHLYGVIPPSIT 179

Query:   189 GLSFLEHLDFSTTRKMG 205
              L  L HLD       G
Sbjct:   180 RLVSLSHLDLRNNNISG 196

GO:0005576 "extracellular region" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2091871 AT3G20820 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 54/188 (28%), Positives = 89/188 (47%)

Query:    14 LLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSNRLA-SWIGDGDCCL-WAGV 71
             LL++  IS + C        C  S+R  LL F+  L +P   +  SW G  DCC  W G+
Sbjct:     8 LLLLLLISSATC--------CPPSDRRALLAFRSALHEPYLGIFNSWTGQ-DCCHNWYGI 58

Query:    72 ICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPXXXXXXXXXXXXXXFNDFQ 131
              CD++T  + ++NLR        P    A+    + G ++                 D++
Sbjct:    59 SCDSLTHRVADINLRGESE---DPIFERAHRTGYMTGHISASICELTRLSAITIA--DWK 113

Query:   132 GV--QIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSG 189
             G+  +IP+ I  +   + L+L+G+Q  G IP+ +G L+ L  L+++ N +       L+ 
Sbjct:   114 GISGEIPKCITRLPFLRTLDLIGNQISGGIPYDIGRLNRLAVLNVADNRISGSIPKSLTN 173

Query:   190 LSFLEHLD 197
             LS L HLD
Sbjct:   174 LSSLMHLD 181

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2043540 AT2G25790 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 60/192 (31%), Positives = 88/192 (45%)

Query:    34 CLES-EREVLLRFKQDLQDPSNRLASWI--GDGDCCLWAGVICDNVTGHI-LELNLRNPF 89
             CL + E E+LL FK  +QDP   L+SW      D CLW+GV+C+N++  + L+L+ +N  
Sbjct:    26 CLHANELELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCNNISRVVSLDLSGKNMS 85

Query:    90 NYYVQPDQFEANPRSMLVGKVN-----PXXXXXXXXXXXXXXF-----NDFQGVQIPRFI 139
                +    F   P    +   N     P              +     N+F G  IPR  
Sbjct:    86 GQILTAATFRL-PFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSG-SIPR-- 141

Query:   140 GSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
             G + N   L+L  + F G I + +G  S+LR LDL  N L     G+L  LS LE L  +
Sbjct:   142 GFLPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLA 201

Query:   200 TTRKMGFTDTKL 211
             + +  G    +L
Sbjct:   202 SNQLTGGVPVEL 213

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
 Identities = 46/162 (28%), Positives = 71/162 (43%)

Query:    34 CLESEREVLLRFKQDLQ--DPSNR------LASWIGDGDCCLWAGVICDNVTGHILELNL 85
             C   +R  LL FK +    + SN+      L+SW    DCC W GV CD ++  ++ LNL
Sbjct:    30 CRHDQRNALLEFKHEFPRVNESNQIPYDVSLSSWNKSIDCCSWEGVTCDAISSEVISLNL 89

Query:    86 RN-PFNYYVQPDQ--FEAN-------PRSMLVGKVNPXXXXXXXXXXXXXXFNDFQGVQI 135
              + P N  ++P+   F+             L G +                +N   G Q+
Sbjct:    90 SHVPLNNSLKPNSGLFKLQHLHNLTLSNCSLYGDIPSSLGNLFRLTLLDLSYNYLVG-QV 148

Query:   136 PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRN 177
             P  IG++     L+L  ++  G +P  +GNL+ L YL  S N
Sbjct:   149 PPSIGNLSRLTILDLWDNKLVGQLPASIGNLTQLEYLIFSHN 190

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 57/180 (31%), Positives = 75/180 (41%)

Query:    14 LLVIAAISMSLCNGNSYHVG----CLESEREVLLRFKQDLQDPS---------NRLASWI 60
             + +I ++ +  C  NS  V     CL  +R+ LL FK +   PS            A W 
Sbjct:     2 ITIIWSLCLIFCLSNSILVIAKDLCLPDQRDALLEFKNEFSIPSPDSDLMLILQTTAKWR 61

Query:    61 GDGDCCLWAGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPXXXXXXXX 120
              + DCC W G+ CD  TG ++EL+L N           + N R     + N         
Sbjct:    62 NNTDCCSWGGISCDPKTGVVVELDLGNS----------DLNGRL----RSNSSLFRLQHL 107

Query:   121 XXXXXXFNDFQGVQIPRFIGSMGNQKYL---NLLGSQFGGVIPHQLGNLSSLRYLDLSRN 177
                   +ND     +P    S GN KYL   NLLG    G IP  L +LS L  LDLS N
Sbjct:   108 QSLDLSYNDLS-CTLP---DSSGNFKYLRVLNLLGCNLFGEIPTSLRSLSYLTDLDLSYN 163

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2169404 PGIP2 "polygalacturonase inhibiting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 59/220 (26%), Positives = 96/220 (43%)

Query:     8 TLFLFQLLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCL 67
             T+ LF LL    ++ SL         C + ++  LL+ K+ L +P + LASW    DCC 
Sbjct:     4 TMTLFLLLSTLLLTTSLAKDL-----CHKDDKTTLLKIKKSLNNPYH-LASWDPKTDCCS 57

Query:    68 WAGVICDNVT-GH-ILELNLRN-PFNYYVQPDQFEANPRSMLV--------GKVNPXXXX 116
             W  + C + T  H +  L +++   +  + P+  +    + L+        G + P    
Sbjct:    58 WYCLECGDATVNHRVTSLIIQDGEISGQIPPEVGDLPYLTSLIFRKLTNLTGHIQPTIAK 117

Query:   117 XXXXXXXXXXFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSR 176
                       + +  G  +P F+  + N +Y++L  +   G IP  L +L  L YL+LSR
Sbjct:   118 LKNLTFLRLSWTNLTG-PVPEFLSQLKNLEYIDLSFNDLSGSIPSSLSSLRKLEYLELSR 176

Query:   177 NFL---YVVNFGWLSGLS---FLEHLDFSTT--RKMGFTD 208
             N L      +FG  SG     FL H   S T  + +G  D
Sbjct:   177 NKLTGPIPESFGTFSGKVPSLFLSHNQLSGTIPKSLGNPD 216

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0090353 "polygalacturonase inhibitor activity" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 56/213 (26%), Positives = 99/213 (46%)

Query:     9 LFLFQLLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQ-DPSNRLAS-WIG----D 62
             +F  ++++  ++ +     +S H  C + +R+ LL F+ +   + S  + + W G     
Sbjct:    10 VFSSRIIIFLSLLVHSLASSSPHF-CRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKS 68

Query:    63 GDCCLWAGVICDNVTGHILELNLRNPF-NYYVQPDQ--FEANP-RSM------LVGKVNP 112
              DCCLW GV C++ +G ++ L++ N F N Y++ +   F+    R +      L G++  
Sbjct:    69 TDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIPS 128

Query:   113 XXXXXXXXXXXXXXFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
                           FN F G +IP  IG++   ++L L  +   G IP  LGNLS L  L
Sbjct:   129 SLGNLSHLTLVNLYFNKFVG-EIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNL 187

Query:   173 DLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMG 205
             +L  N L       +  L  L +L  ++   +G
Sbjct:   188 ELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIG 220

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 61/199 (30%), Positives = 90/199 (45%)

Query:    16 VIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSN-RLASWIGDGDCCLWAGVICD 74
             V A  ++ LC+        LE + E  ++ K     PS  +  SW    DCC W G+ CD
Sbjct:    21 VFAVPNIHLCHFEQRDA-LLEFKNEFKIK-KPCFGCPSPLKTKSWENGSDCCHWDGITCD 78

Query:    75 NVTGHILELNLR----------NPFNYYVQPDQFEAN---PRSMLVGKVNPXXXXXXXXX 121
               TG ++E++L           N     +Q   F        + L G+++          
Sbjct:    79 AKTGEVIEIDLMCSCLHGWFHSNSNLSMLQNFHFLTTLDLSYNHLSGQISSSIGNLSHLT 138

Query:   122 XXXXXFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS-RNFLY 180
                   N+F G  IP  +G++ +   L+L  + FGG IP  LGNLS L +LDLS  NF+ 
Sbjct:   139 TLDLSGNNFSG-WIPSSLGNLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVG 197

Query:   181 VV--NFGWLSGLSFLEHLD 197
              +  +FG L+ LS L  LD
Sbjct:   198 EIPSSFGSLNQLSILR-LD 215

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2091260 DRT100 "DNA-DAMAGE REPAIR/TOLERATION 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 4.9e-11, P = 4.9e-11
 Identities = 46/171 (26%), Positives = 83/171 (48%)

Query:    34 CLESEREVLLRFKQDLQDPSNRLAS-WIGDGDCCL-WAGVICDNVTGHILELNLRNPFNY 91
             C   ++  L  FK  L +P+  + + W  + DCC  W G+ CD  +G + +++LR     
Sbjct:    27 CSPKDQTALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPDSGRVTDISLRGESED 86

Query:    92 YVQPDQFEANPRS-MLVGKVNPXXXXXXXXXXXXXXFNDFQGV--QIPRFIGSMGNQKYL 148
              +    F+   RS  + G ++P                D++G+  +IP  I S+ + + L
Sbjct:    87 AI----FQKAGRSGYMSGSIDPAVCDLTALTSLVLA--DWKGITGEIPPCITSLASLRIL 140

Query:   149 NLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
             +L G++  G IP ++G LS L  L+L+ N +       L+ L  L+HL+ +
Sbjct:   141 DLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSLIELKHLELT 191

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0009650 "UV protection" evidence=IGI

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009411 "response to UV" evidence=IGI

GO:0009507 "chloroplast" evidence=ISS

GO:0042493 "response to drug" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 79.9 bits (197), Expect = 2e-17
 Identities = 60/182 (32%), Positives = 87/182 (47%), Gaps = 23/182 (12%)

Query: 38  EREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDN-------------VTGHILELN 84
           E E+LL FK  + DP   L++W    D CLW G+ C+N             ++G I    
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAI 89

Query: 85  LRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEH-LSYLDLSFNDFQGVQIPRFIGSMG 143
            R P   Y+Q      N    L G +   +      L YL+LS N+F G  IPR  GS+ 
Sbjct: 90  FRLP---YIQTINLSNN---QLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPR--GSIP 140

Query: 144 NQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRK 203
           N + L+L  +   G IP+ +G+ SSL+ LDL  N L       L+ L+ LE L  ++ + 
Sbjct: 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Query: 204 MG 205
           +G
Sbjct: 201 VG 202

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.9 bits (140), Expect = 7e-10
 Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN 165
           LVGK+  SL +L  L +L L+ N   G QIPR +G M + K++ L  +   G IP+++G 
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Query: 166 LSSLRYLDLSRNFL---YVVNFGWLSGLSFL 193
           L+SL +LDL  N L      + G L  L +L
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 49/154 (31%), Positives = 67/154 (43%), Gaps = 30/154 (19%)

Query: 35  LESEREVLLRFKQDLQDPSNRLASWIGDGDCCL-----WAGVIC--DNVTGH--ILELNL 85
           L  E   L   K  L  P  R   W  +GD C+     W+G  C  D+  G   I  L L
Sbjct: 370 LLEEVSALQTLKSSLGLPL-RFG-W--NGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGL 425

Query: 86  RNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQ 145
            N                  L G +   +  L HL  ++LS N  +G  IP  +GS+ + 
Sbjct: 426 DN----------------QGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSL 468

Query: 146 KYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFL 179
           + L+L  + F G IP  LG L+SLR L+L+ N L
Sbjct: 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 35 LESEREVLLRFKQDLQ-DPSNRLASWIG-DGDCCLWAGVICD 74
          L  +R+ LL FK  L  DPS  L+SW     D C W GV CD
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN 165
           L G++N    D+  L  L L+ N F G  +P   GS    + L+L  +QF G +P +LG+
Sbjct: 440 LQGRINSRKWDMPSLQMLSLARNKFFG-GLPDSFGS-KRLENLDLSRNQFSGAVPRKLGS 497

Query: 166 LSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           LS L  L LS N L       LS    L  LD S
Sbjct: 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN 165
           L G++   +  L  L++LDL +N+  G  IP  +G++ N +YL L  ++  G IP  + +
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 166 LSSLRYLDLSRNFL 179
           L  L  LDLS N L
Sbjct: 283 LQKLISLDLSDNSL 296

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQ 162
           ++ L G + PS+  L+ L  LDLS N   G +IP  +  + N + L+L  + F G IP  
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSG-EIPELVIQLQNLEILHLFSNNFTGKIPVA 327

Query: 163 LGNLSSLRYLDLSRN 177
           L +L  L+ L L  N
Sbjct: 328 LTSLPRLQVLQLWSN 342

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 109 KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQ--FGGVIPHQLGNL 166
            + P +  L  L  LDLS N      I   + S+ N K L+ L         +P  +GNL
Sbjct: 200 DLPPEIELLSALEELDLSNNS-----IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNL 254

Query: 167 SSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           S+L  LDLS N +   +   L  L+ L  LD S
Sbjct: 255 SNLETLDLSNNQI--SSISSLGSLTNLRELDLS 285

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 146 KYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           K L+L  ++   +       L +L+ LDLS N L  ++    SGL  L  LD S
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLS 56

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
           P     + L  LDLS N F G  +PR +GS+     L L  ++  G IP +L +   L  
Sbjct: 469 PDSFGSKRLENLDLSRNQFSGA-VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527

Query: 172 LDLSRNFL 179
           LDLS N L
Sbjct: 528 LDLSHNQL 535

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN 165
           L G++   ++ L++L  L L  N+F G +IP  + S+   + L L  ++F G IP  LG 
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Query: 166 LSSLRYLDLSRNFL 179
            ++L  LDLS N L
Sbjct: 355 HNNLTVLDLSTNNL 368

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRN 177
           +L  LDLS N    +        + N K L+L G+    + P     L SLR LDLS N
Sbjct: 1   NLKSLDLSNNRLTVIP-DGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQ 162
            + L G++   L   + L  LDLS N   G QIP     M     L+L  +Q  G IP  
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSG-QIPASFSEMPVLSQLDLSQNQLSGEIPKN 566

Query: 163 LGNLSSLRYLDLSRNFLY 180
           LGN+ SL  +++S N L+
Sbjct: 567 LGNVESLVQVNISHNHLH 584

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
PLN03150	623	hypothetical protein; Provisional	99.8
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.52
PLN03150	623	hypothetical protein; Provisional	99.38
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.26
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.01
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	99.01
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.97
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.9
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.89
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.88
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.75
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.74
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.72
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.64
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.62
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.51
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.48
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.44
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.44
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.41
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.4
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.37
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.37
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.31
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.28
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.27
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.24
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.17
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.04
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.97
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.94
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.89
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.8
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.71
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.53
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.41
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.35
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.33
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.28
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.91
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.9
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.73
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.24
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.14
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.08
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.03
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.02
PRK15386	426	type III secretion protein GogB; Provisional	95.85
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.43
PRK15386	426	type III secretion protein GogB; Provisional	94.98
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	94.97
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.77
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.72
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.91
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.69
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	93.16
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.01
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.55
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.26
smart00370	26	LRR Leucine-rich repeats, outliers.	92.16
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.16
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.14
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.46
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.14

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=6.9e-23  Score=194.60  Aligned_cols=176  Identities=32%  Similarity=0.575  Sum_probs=139.2

Q ss_pred             CHHHHHHHHHHHhhCCCCCCCCCCCCCCCCcccccceEEcCCCCcEEEEEcCCCC--CCC-----CCCccccCC-CCCCC
Q 027602           35 LESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNLRNPF--NYY-----VQPDQFEAN-PRSML  106 (221)
Q Consensus        35 ~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~--~~l-----~~~~~~~~~-~~n~l  106 (221)
                      .++|+.+|++||+.+.+|...+.+|+...+||.|.||+|++ .++|+.|++++..  +.+     ....+..+. +.|.+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~  105 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL  105 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence            35889999999999988877789998878999999999986 5799999999853  100     011111111 34677


Q ss_pred             ccccCcccc-CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC
Q 027602          107 VGKVNPSLL-DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG  185 (221)
Q Consensus       107 ~g~~p~~l~-~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p  185 (221)
                      .|.+|..+. ++++|++|++++|.++| .+|.  +.+++|++|++++|.+++.+|..++++++|++|++++|.+. +.+|
T Consensus       106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~-~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p  181 (968)
T PLN00113        106 SGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-GKIP  181 (968)
T ss_pred             CCcCChHHhccCCCCCEEECcCCcccc-ccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc-ccCC
Confidence            778887655 78888888888888887 6765  45788888888888888888888999999999999999987 5666


Q ss_pred             -cCCCCCCCCEEEcccCCCCCCCCccccccc
Q 027602          186 -WLSGLSFLEHLDFSTTRKMGFTDTKLVSVI  215 (221)
Q Consensus       186 -~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~  215 (221)
                       .+.++++|++|++++|.++|.+|..+..+.
T Consensus       182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  212 (968)
T PLN00113        182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMK  212 (968)
T ss_pred             hhhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence             788899999999999999999997765544

>PLN03150 hypothetical protein; Provisional

Probab=99.80  E-value=6.3e-19  Score=160.00  Aligned_cols=156  Identities=32%  Similarity=0.448  Sum_probs=132.9

Q ss_pred             CCCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCcc-----cccceEEcCC--C--CcEEEEEcCCCCCCCCCCccccCC
Q 027602           31 HVGCLESEREVLLRFKQDLQDPSNRLASWIGDGDCC-----LWAGVICDNV--T--GHILELNLRNPFNYYVQPDQFEAN  101 (221)
Q Consensus        31 ~~~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~c-----~w~gv~c~~~--~--~~v~~l~l~~~~~~l~~~~~~~~~  101 (221)
                      ...+.++|.++|..+|..+.++..  .+|.+  ++|     .|.||.|...  .  .+|+.|+|++              
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~~--~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~--------------  427 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPLR--FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--------------  427 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCccc--CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCC--------------
Confidence            345667899999999999875532  48975  345     7999999531  1  2589999998              


Q ss_pred             CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602          102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                        |.+.|.+|+.+..+++|+.|+|++|.++| .+|..++.+++|+.|++++|+++|.+|+.++++++|++|++++|+++ 
T Consensus       428 --n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~-  503 (623)
T PLN03150        428 --QGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS-  503 (623)
T ss_pred             --CCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc-
Confidence              59999999999999999999999999999 99999999999999999999999999999999999999999999998 


Q ss_pred             cCCC-cCCC-CCCCCEEEcccCCCCCCCC
Q 027602          182 VNFG-WLSG-LSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       182 ~~~p-~~~~-l~~L~~L~l~~N~l~g~ip  208 (221)
                      +.+| .+.. ..++..+++.+|...+.+|
T Consensus       504 g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        504 GRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ccCChHHhhccccCceEEecCCccccCCC
Confidence            7888 5554 3577899999998666555

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.52  E-value=2.5e-14  Score=136.30  Aligned_cols=107  Identities=30%  Similarity=0.454  Sum_probs=62.7

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+.+|..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+++.+|..++++++|++|++++|.++ +.
T Consensus       150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~  227 (968)
T PLN00113        150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS-GE  227 (968)
T ss_pred             CcccccCChHHhcCCCCCEEECccCcccc-cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC-Cc
Confidence            55555666666666666666666666665 55665666666666666666665555655555666666666665554 34


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCCcccc
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKLV  212 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~  212 (221)
                      +| .+.++++|++|++++|.++|.+|..+.
T Consensus       228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  257 (968)
T PLN00113        228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLG  257 (968)
T ss_pred             CChhHhcCCCCCEEECcCceeccccChhHh
Confidence            44 455555555555555555555554443

>PLN03150 hypothetical protein; Provisional

Probab=99.38  E-value=7.6e-13  Score=120.49  Aligned_cols=93  Identities=29%  Similarity=0.374  Sum_probs=87.2

Q ss_pred             CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEE
Q 027602          119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLD  197 (221)
Q Consensus       119 ~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~  197 (221)
                      .++.|+|++|.++| .+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|++++|+++ +.+| .+.++++|++|+
T Consensus       419 ~v~~L~L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls-g~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN-GSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC-CCCchHHhcCCCCCEEE
Confidence            37889999999999 99999999999999999999999999999999999999999999998 7777 788999999999


Q ss_pred             cccCCCCCCCCccccc
Q 027602          198 FSTTRKMGFTDTKLVS  213 (221)
Q Consensus       198 l~~N~l~g~ip~~~~~  213 (221)
                      +++|+++|.+|..+..
T Consensus       497 Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        497 LNGNSLSGRVPAALGG  512 (623)
T ss_pred             CcCCcccccCChHHhh
Confidence            9999999999987654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.26  E-value=1.4e-13  Score=103.68  Aligned_cols=107  Identities=25%  Similarity=0.376  Sum_probs=73.7

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG  157 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g  157 (221)
                      ..+|++.|+.                |.++ .+|+.+..+.+|++|++.+|+++  .+|..+..+++|+.|+++-|++. 
T Consensus        33 s~ITrLtLSH----------------NKl~-~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~-   92 (264)
T KOG0617|consen   33 SNITRLTLSH----------------NKLT-VVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLN-   92 (264)
T ss_pred             hhhhhhhccc----------------Ccee-ecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhh-
Confidence            4577777777                4554 55666777777777777777777  67777777777777777777776 


Q ss_pred             CCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCC
Q 027602          158 VIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKM  204 (221)
Q Consensus       158 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~  204 (221)
                      .+|..|+.++.|+.||+..|++....+| .|..+..|+.|++++|.|.
T Consensus        93 ~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe  140 (264)
T KOG0617|consen   93 ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE  140 (264)
T ss_pred             cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence            6777777777777777777776544445 4555555555555555554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.01  E-value=9.2e-11  Score=98.73  Aligned_cols=98  Identities=28%  Similarity=0.340  Sum_probs=75.9

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |++-..+|.+++.+..|+.|+++.|+|.  .+|..+-.+..++.+-.++|++....|..++++.+|.+||+.+|.+. ..
T Consensus       444 NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr--~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~I  520 (565)
T KOG0472|consen  444 NNLLNDLPEEMGSLVRLQTLNLSFNRFR--MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QI  520 (565)
T ss_pred             cchhhhcchhhhhhhhhheecccccccc--cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hC
Confidence            5666677777777777777777777776  56766655556666666667776444555899999999999999996 44


Q ss_pred             CCcCCCCCCCCEEEcccCCCC
Q 027602          184 FGWLSGLSFLEHLDFSTTRKM  204 (221)
Q Consensus       184 ~p~~~~l~~L~~L~l~~N~l~  204 (221)
                      +|.+++|.+|++|++.+|.|.
T Consensus       521 Pp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  521 PPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ChhhccccceeEEEecCCccC
Confidence            559999999999999999998

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=99.01  E-value=6e-10  Score=65.51  Aligned_cols=39  Identities=49%  Similarity=1.003  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHhhCC-CCCCCCCCCCCC--CCcccccceEEc
Q 027602           36 ESEREVLLRFKQDLQ-DPSNRLASWIGD--GDCCLWAGVICD   74 (221)
Q Consensus        36 ~~~~~~L~~~~~~l~-~~~~~l~~W~~~--~~~c~w~gv~c~   74 (221)
                      ++|+++|++||+++. ++...+.+|+.+  .+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            689999999999998 566789999987  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.97  E-value=2.5e-11  Score=102.14  Aligned_cols=103  Identities=28%  Similarity=0.258  Sum_probs=87.1

Q ss_pred             CCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccC-CCCCCCEEeCcCCCCCCcC
Q 027602          105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLG-NLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       105 ~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~-~l~~L~~L~l~~N~l~~~~  183 (221)
                      ++-+.+|++++.+.+|+.|+++.|.+.  .+| +|+.+..|.+++++.|.+. .+|.... +++++..||+..|+++  .
T Consensus       193 N~L~tlP~~lg~l~~L~~LyL~~Nki~--~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk--e  266 (565)
T KOG0472|consen  193 NLLETLPPELGGLESLELLYLRRNKIR--FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK--E  266 (565)
T ss_pred             hhhhcCChhhcchhhhHHHHhhhcccc--cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc--c
Confidence            566889999999999999999999998  677 6888888999999998887 6787665 8899999999999995  6


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCCcccccc
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSV  214 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~  214 (221)
                      .| .+.-+++|+.||+++|.+++ +|.+++++
T Consensus       267 ~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl  297 (565)
T KOG0472|consen  267 VPDEICLLRSLERLDLSNNDISS-LPYSLGNL  297 (565)
T ss_pred             CchHHHHhhhhhhhcccCCcccc-CCcccccc
Confidence            66 77788999999999999998 66666544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.96  E-value=5.5e-11  Score=89.77  Aligned_cols=96  Identities=24%  Similarity=0.343  Sum_probs=84.9

Q ss_pred             ccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCC
Q 027602          114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSF  192 (221)
Q Consensus       114 l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~  192 (221)
                      +.++.+++.|.+++|.++  .+|+.+..+.+|+.|++.+|++. .+|.++..+++|++|+++.|++.  .+| .|+.++.
T Consensus        29 Lf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~  103 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPA  103 (264)
T ss_pred             ccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--cCccccCCCch
Confidence            456788899999999999  79999999999999999999998 79999999999999999999995  556 8999999


Q ss_pred             CCEEEcccCCCCCC-CCcccccc
Q 027602          193 LEHLDFSTTRKMGF-TDTKLVSV  214 (221)
Q Consensus       193 L~~L~l~~N~l~g~-ip~~~~~~  214 (221)
                      |++||+..|+++.. +|..+.-+
T Consensus       104 levldltynnl~e~~lpgnff~m  126 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYM  126 (264)
T ss_pred             hhhhhccccccccccCCcchhHH
Confidence            99999999998765 67655443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.90  E-value=7.7e-11  Score=103.25  Aligned_cols=104  Identities=25%  Similarity=0.215  Sum_probs=75.9

Q ss_pred             CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602          103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV  182 (221)
Q Consensus       103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~  182 (221)
                      +|++...-...+.+++.|+.|++++|.+.. .-++.|...++|++|+|++|+++...+..+..+..|+.|.|++|++.  
T Consensus       278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r-ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~--  354 (873)
T KOG4194|consen  278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQR-IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID--  354 (873)
T ss_pred             cchhhhhhcccccccchhhhhccchhhhhe-eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH--
Confidence            367766666677888888888888888886 56677888888888888888888666666777777777777777764  


Q ss_pred             CCC--cCCCCCCCCEEEcccCCCCCCCCc
Q 027602          183 NFG--WLSGLSFLEHLDFSTTRKMGFTDT  209 (221)
Q Consensus       183 ~~p--~~~~l~~L~~L~l~~N~l~g~ip~  209 (221)
                      .+.  .|..+++|+.|||..|.+++.|.+
T Consensus       355 ~l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  355 HLAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             HHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence            333  455667777777777777766654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.89  E-value=2.4e-08  Score=92.44  Aligned_cols=41  Identities=12%  Similarity=0.069  Sum_probs=31.9

Q ss_pred             CCCCCCCHHHHHHHHHHHhhCCCCCCCCCC----CCCCCCcccccc
Q 027602           29 SYHVGCLESEREVLLRFKQDLQDPSNRLAS----WIGDGDCCLWAG   70 (221)
Q Consensus        29 ~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~----W~~~~~~c~w~g   70 (221)
                      .+..+..++|...+.++.+.+..|. +..+    |.+.+++|.-..
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~   99 (754)
T PRK15370         55 HPPETASPEEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSE   99 (754)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCC
Confidence            4567788999999999999998774 3444    998889996543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.88  E-value=1.4e-09  Score=83.45  Aligned_cols=90  Identities=28%  Similarity=0.259  Sum_probs=42.7

Q ss_pred             ccc-CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCcccc-CCCCCCCEEeCcCCCCCC-cCCCcCCC
Q 027602          113 SLL-DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL-GNLSSLRYLDLSRNFLYV-VNFGWLSG  189 (221)
Q Consensus       113 ~l~-~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l-~~l~~L~~L~l~~N~l~~-~~~p~~~~  189 (221)
                      .++ .+.+|+.|++++|.++  .++ .+..+++|++|++++|+++ .+.+.+ ..+++|+.|++++|++.. ..+..+..
T Consensus        36 ~L~~~l~~L~~L~Ls~N~I~--~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~  111 (175)
T PF14580_consen   36 NLGATLDKLEVLDLSNNQIT--KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSS  111 (175)
T ss_dssp             S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG
T ss_pred             chhhhhcCCCEEECCCCCCc--ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHc
Confidence            344 5789999999999999  564 4778999999999999998 454444 468999999999999853 22336677


Q ss_pred             CCCCCEEEcccCCCCCC
Q 027602          190 LSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       190 l~~L~~L~l~~N~l~g~  206 (221)
                      +++|++|++.+|.++..
T Consensus       112 l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen  112 LPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -TT--EEE-TT-GGGGS
T ss_pred             CCCcceeeccCCcccch
Confidence            99999999999998754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.88  E-value=2e-09  Score=94.53  Aligned_cols=99  Identities=25%  Similarity=0.337  Sum_probs=55.9

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+...-+..|.++++|+.+++..|.++  .||.......+|+.|+|.+|.++..-.+++..++.|+.|||+.|.++...
T Consensus        88 Nkl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~  165 (873)
T KOG4194|consen   88 NKLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP  165 (873)
T ss_pred             cccccCcHHHHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc
Confidence            5666555666677777777777777777  56665555556666666666665443444445555555555555554222


Q ss_pred             CCcCCCCCCCCEEEcccCCCC
Q 027602          184 FGWLSGLSFLEHLDFSTTRKM  204 (221)
Q Consensus       184 ~p~~~~l~~L~~L~l~~N~l~  204 (221)
                      .|.+..-.++++|+|++|.|+
T Consensus       166 ~~sfp~~~ni~~L~La~N~It  186 (873)
T KOG4194|consen  166 KPSFPAKVNIKKLNLASNRIT  186 (873)
T ss_pred             CCCCCCCCCceEEeecccccc
Confidence            224443344444444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.87  E-value=1.1e-09  Score=69.49  Aligned_cols=58  Identities=38%  Similarity=0.578  Sum_probs=28.7

Q ss_pred             CCcEEeCccCCCCCCccc-ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCC
Q 027602          119 HLSYLDLSFNDFQGVQIP-RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF  178 (221)
Q Consensus       119 ~L~~L~L~~n~l~g~~ip-~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~  178 (221)
                      +|++|++++|+++  .+| ..|..+++|++|++++|.++...|..+.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~--~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLT--EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTES--EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCC--ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4455555555555  233 234455555555555555543333444555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=2.3e-09  Score=67.92  Aligned_cols=60  Identities=32%  Similarity=0.329  Sum_probs=52.0

Q ss_pred             CCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCC
Q 027602          143 GNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRK  203 (221)
Q Consensus       143 ~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l  203 (221)
                      ++|++|++++|+++...+..+.++++|++|++++|.++ ...+ .|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence            57899999999999555568899999999999999996 3334 788999999999999985

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.75  E-value=9e-10  Score=100.80  Aligned_cols=99  Identities=28%  Similarity=0.431  Sum_probs=78.4

Q ss_pred             CCCCccccCccccCCCCCcEEeCccCCCCCCccccc-ccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602          103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRF-IGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~-~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                      .|.++...-+.+.++++|++|+|++|++.  .+|.. +.++..|+.|+|++|+++ .+|..+.++..|++|...+|.+. 
T Consensus       368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-  443 (1081)
T KOG0618|consen  368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-  443 (1081)
T ss_pred             cCcccccchhhhccccceeeeeecccccc--cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-
Confidence            36777777777889999999999999998  67754 678999999999999998 67777777777777777777773 


Q ss_pred             cCCCcCCCCCCCCEEEcccCCCCCC
Q 027602          182 VNFGWLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       182 ~~~p~~~~l~~L~~L~l~~N~l~g~  206 (221)
                       .+|++..++.|+.+|++.|+++--
T Consensus       444 -~fPe~~~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  444 -SFPELAQLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             -echhhhhcCcceEEecccchhhhh
Confidence             566777777777777777776543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.74  E-value=9.7e-10  Score=97.41  Aligned_cols=97  Identities=31%  Similarity=0.389  Sum_probs=74.1

Q ss_pred             CCCc-cccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCcccc-CCCCCCCEEeCcCCCCCC
Q 027602          104 SMLV-GKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL-GNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       104 n~l~-g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l-~~l~~L~~L~l~~N~l~~  181 (221)
                      |++. ..+|+++..+..|++|||++|++.  .+|..+..-+++..|+|++|++. .||..+ .+++.|-+|||++|++. 
T Consensus        88 N~LKnsGiP~diF~l~dLt~lDLShNqL~--EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-  163 (1255)
T KOG0444|consen   88 NNLKNSGIPTDIFRLKDLTILDLSHNQLR--EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-  163 (1255)
T ss_pred             cccccCCCCchhcccccceeeecchhhhh--hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-
Confidence            4554 467888888888999999999888  78888888888888888888886 566543 57788888888888874 


Q ss_pred             cCCCcCCCCCCCCEEEcccCCCC
Q 027602          182 VNFGWLSGLSFLEHLDFSTTRKM  204 (221)
Q Consensus       182 ~~~p~~~~l~~L~~L~l~~N~l~  204 (221)
                      ..+|.+.++..|++|.|++|.+.
T Consensus       164 ~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  164 MLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             hcCHHHHHHhhhhhhhcCCChhh
Confidence            33446667777888888887653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.72  E-value=1.2e-09  Score=96.89  Aligned_cols=107  Identities=16%  Similarity=0.231  Sum_probs=57.1

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCc-cccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLV-GKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG  156 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~-g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~  156 (221)
                      .-|..+++++                |.++ +.+|....+++++++|.|....+.  .+|.+++.+.+|++|.+++|++.
T Consensus         7 pFVrGvDfsg----------------NDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~   68 (1255)
T KOG0444|consen    7 PFVRGVDFSG----------------NDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI   68 (1255)
T ss_pred             ceeecccccC----------------CcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH
Confidence            3467778877                4555 456666666666666666666666  56666666666666666666554


Q ss_pred             CCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCC
Q 027602          157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRK  203 (221)
Q Consensus       157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l  203 (221)
                      . +-..+..++.|+.+++..|++....+| .+.++..|++|||++|++
T Consensus        69 ~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL  115 (1255)
T KOG0444|consen   69 S-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL  115 (1255)
T ss_pred             h-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh
Confidence            2 222333444444444444444332233 344444444444444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.64  E-value=3.7e-08  Score=91.19  Aligned_cols=86  Identities=23%  Similarity=0.164  Sum_probs=55.7

Q ss_pred             CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEE
Q 027602          119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLD  197 (221)
Q Consensus       119 ~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~  197 (221)
                      +|+.|++++|.++  .+|..   .++|+.|++++|+++ .+|..   ..+|+.|++++|.++  .+| .+..+++|+.|+
T Consensus       383 ~L~~LdLs~N~Lt--~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt--~LP~sl~~L~~L~~Ld  451 (788)
T PRK15387        383 GLKELIVSGNRLT--SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT--RLPESLIHLSSETTVN  451 (788)
T ss_pred             ccceEEecCCccc--CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc--ccChHHhhccCCCeEE
Confidence            3455555555555  23432   235566666666665 34532   235667777777774  566 677899999999


Q ss_pred             cccCCCCCCCCccccccc
Q 027602          198 FSTTRKMGFTDTKLVSVI  215 (221)
Q Consensus       198 l~~N~l~g~ip~~~~~~~  215 (221)
                      +++|+|+|.+|..+..+.
T Consensus       452 Ls~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        452 LEGNPLSERTLQALREIT  469 (788)
T ss_pred             CCCCCCCchHHHHHHHHh
Confidence            999999999887664433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.62  E-value=5.9e-09  Score=95.61  Aligned_cols=104  Identities=30%  Similarity=0.332  Sum_probs=88.3

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccC-ccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVN-PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG  156 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p-~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~  156 (221)
                      .+++-|+|++                |.+. .+| ..+.++..|+.|+|++|.++  .+|..+..+..|++|...+|++.
T Consensus       383 ~hLKVLhLsy----------------NrL~-~fpas~~~kle~LeeL~LSGNkL~--~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  383 KHLKVLHLSY----------------NRLN-SFPASKLRKLEELEELNLSGNKLT--TLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             cceeeeeecc----------------cccc-cCCHHHHhchHHhHHHhcccchhh--hhhHHHHhhhhhHHHhhcCCcee
Confidence            3567777777                5665 455 46789999999999999999  89999999999999999999997


Q ss_pred             CCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCC
Q 027602          157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTR  202 (221)
Q Consensus       157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~  202 (221)
                       .+| .+..++.|+.+|++.|.++...+|....-++|++||+++|.
T Consensus       444 -~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  444 -SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             -ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence             678 78999999999999999987777744444899999999997

>PLN03210 Resistant to P

Probab=98.51  E-value=5.9e-07  Score=87.56  Aligned_cols=99  Identities=21%  Similarity=0.134  Sum_probs=71.8

Q ss_pred             ccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCC
Q 027602          109 KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLS  188 (221)
Q Consensus       109 ~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~  188 (221)
                      .++..+..+++|+.|+++++.... .+|. +..+++|++|++++|.....+|..++.+++|++|++++|... ..+|...
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L-~~Lp~~i  701 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL-EILPTGI  701 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc-CccCCcC
Confidence            456667778888888888765444 6664 677888888888887666678888888888888888876543 5666434


Q ss_pred             CCCCCCEEEcccCCCCCCCCcc
Q 027602          189 GLSFLEHLDFSTTRKMGFTDTK  210 (221)
Q Consensus       189 ~l~~L~~L~l~~N~l~g~ip~~  210 (221)
                      ++++|++|++++|...+.+|..
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~~  723 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPDI  723 (1153)
T ss_pred             CCCCCCEEeCCCCCCccccccc
Confidence            6778888888877666666544

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.48  E-value=8.8e-09  Score=86.71  Aligned_cols=99  Identities=23%  Similarity=0.243  Sum_probs=65.6

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccC-CcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLG-SQFGGVIPHQLGNLSSLRYLDLSRNFLYVV  182 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~-N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~  182 (221)
                      |+++-..|..|..+++|+.|||++|.++. .-|..|..+++|..|.+.+ |+++...-..|+++.+++.|.+.-|++...
T Consensus        77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci  155 (498)
T KOG4237|consen   77 NQISSIPPGAFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI  155 (498)
T ss_pred             CCcccCChhhccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence            68887777789999999999999999997 6788899999888877766 888743334456666555555555554311


Q ss_pred             CCCcCCCCCCCCEEEcccCCC
Q 027602          183 NFGWLSGLSFLEHLDFSTTRK  203 (221)
Q Consensus       183 ~~p~~~~l~~L~~L~l~~N~l  203 (221)
                      ....+..+++|..|.+.+|.+
T Consensus       156 r~~al~dL~~l~lLslyDn~~  176 (498)
T KOG4237|consen  156 RQDALRDLPSLSLLSLYDNKI  176 (498)
T ss_pred             hHHHHHHhhhcchhcccchhh
Confidence            111344444444444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.44  E-value=7.7e-08  Score=73.88  Aligned_cols=86  Identities=26%  Similarity=0.311  Sum_probs=29.0

Q ss_pred             ccCCCCCcEEeCccCCCCCCccccccc-CCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cC-CCC
Q 027602          114 LLDLEHLSYLDLSFNDFQGVQIPRFIG-SMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WL-SGL  190 (221)
Q Consensus       114 l~~l~~L~~L~L~~n~l~g~~ip~~~~-~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~-~~l  190 (221)
                      +.+...+++|+|++|.++  .|. .++ .+.+|+.|++++|.++ .+ +.+..+++|+.|++++|+++  .+. .+ ..+
T Consensus        15 ~~n~~~~~~L~L~~n~I~--~Ie-~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~--~i~~~l~~~l   87 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS--TIE-NLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRIS--SISEGLDKNL   87 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS-----S-CHHHHHH-
T ss_pred             cccccccccccccccccc--ccc-chhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCC--ccccchHHhC
Confidence            455667899999999998  553 455 5889999999999998 34 35778999999999999996  454 34 358


Q ss_pred             CCCCEEEcccCCCCCC
Q 027602          191 SFLEHLDFSTTRKMGF  206 (221)
Q Consensus       191 ~~L~~L~l~~N~l~g~  206 (221)
                      ++|++|++++|+|..-
T Consensus        88 p~L~~L~L~~N~I~~l  103 (175)
T PF14580_consen   88 PNLQELYLSNNKISDL  103 (175)
T ss_dssp             TT--EEE-TTS---SC
T ss_pred             CcCCEEECcCCcCCCh
Confidence            9999999999999763

>PLN03210 Resistant to P

Probab=98.44  E-value=9.9e-07  Score=86.04  Aligned_cols=101  Identities=19%  Similarity=0.240  Sum_probs=65.4

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |...+.+|..+.++++|+.|++++|..-+ .+|..+ .+++|++|++++|.....+|..   .++|+.|++++|.++  .
T Consensus       788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~--~  860 (1153)
T PLN03210        788 IPSLVELPSSIQNLHKLEHLEIENCINLE-TLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE--E  860 (1153)
T ss_pred             CCCccccChhhhCCCCCCEEECCCCCCcC-eeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc--c
Confidence            45666788888888999999998865444 677665 5777777777776544444432   246667777777764  4


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCCccc
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKL  211 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~  211 (221)
                      +| .+..+++|++|++++|+--..+|...
T Consensus       861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~  889 (1153)
T PLN03210        861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNI  889 (1153)
T ss_pred             ChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence            55 56667777777776633333355443

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.41  E-value=1.1e-07  Score=79.45  Aligned_cols=88  Identities=25%  Similarity=0.284  Sum_probs=37.5

Q ss_pred             CCCcEEeCccCCCCCC---cccccccCCCCCcEEEccCCcCCCC----CccccCCCCCCCEEeCcCCCCCCcC---CC-c
Q 027602          118 EHLSYLDLSFNDFQGV---QIPRFIGSMGNQKYLNLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFLYVVN---FG-W  186 (221)
Q Consensus       118 ~~L~~L~L~~n~l~g~---~ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~~~---~p-~  186 (221)
                      ++|+.|++++|.+++.   .++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+....   +. .
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            4555555555555530   1122233344555555555555421    1222333345555555555443111   11 2


Q ss_pred             CCCCCCCCEEEcccCCCCC
Q 027602          187 LSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       187 ~~~l~~L~~L~l~~N~l~g  205 (221)
                      +..+++|++|++++|.+++
T Consensus       217 ~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             hcccCCCCEEecCCCcCch
Confidence            2334445555555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.40  E-value=8.7e-08  Score=79.99  Aligned_cols=113  Identities=20%  Similarity=0.149  Sum_probs=82.9

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCC---CcEEeCccCCCCCC---cccccccCC-CCCcEEEc
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEH---LSYLDLSFNDFQGV---QIPRFIGSM-GNQKYLNL  150 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~---L~~L~L~~n~l~g~---~ip~~~~~l-~~L~~L~l  150 (221)
                      ..++.+++++                |.+.+..+..+..+.+   |+.|++++|++++.   .+...+..+ ++|+.|++
T Consensus        81 ~~L~~L~l~~----------------~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L  144 (319)
T cd00116          81 CGLQELDLSD----------------NALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL  144 (319)
T ss_pred             CceeEEEccC----------------CCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence            4788888887                4676555555555555   99999999999831   223345566 89999999


Q ss_pred             cCCcCCCC----CccccCCCCCCCEEeCcCCCCCCcCCC----cCCCCCCCCEEEcccCCCCCC
Q 027602          151 LGSQFGGV----IPHQLGNLSSLRYLDLSRNFLYVVNFG----WLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       151 ~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~~~~p----~~~~l~~L~~L~l~~N~l~g~  206 (221)
                      ++|.+++.    ++..+..+++|++|++++|.+++..++    .+...++|++|++++|.+++.
T Consensus       145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence            99999853    334556778899999999998633222    344567999999999998754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.37  E-value=2e-06  Score=79.91  Aligned_cols=44  Identities=16%  Similarity=0.186  Sum_probs=26.0

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG  156 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~  156 (221)
                      |+++. +|.   .+++|++|++++|+++  .+|..   .++|+.|++++|.++
T Consensus       232 N~Lt~-LP~---lp~~Lk~LdLs~N~Lt--sLP~l---p~sL~~L~Ls~N~L~  275 (788)
T PRK15387        232 NNLTS-LPA---LPPELRTLEVSGNQLT--SLPVL---PPGLLELSIFSNPLT  275 (788)
T ss_pred             CcCCC-CCC---CCCCCcEEEecCCccC--cccCc---ccccceeeccCCchh
Confidence            55553 553   2467888888888888  45643   234555555555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.37  E-value=5e-08  Score=79.87  Aligned_cols=97  Identities=25%  Similarity=0.297  Sum_probs=60.8

Q ss_pred             ccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCC---------------------CccccCCCC
Q 027602          109 KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV---------------------IPHQLGNLS  167 (221)
Q Consensus       109 ~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~---------------------~p~~l~~l~  167 (221)
                      .+.+++.-++.++.|++++|.+.  .+.. +..+++|+.|+|++|.++..                     --..++++.
T Consensus       298 ~iDESvKL~Pkir~L~lS~N~i~--~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLY  374 (490)
T KOG1259|consen  298 QIDESVKLAPKLRRLILSQNRIR--TVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLY  374 (490)
T ss_pred             hhhhhhhhccceeEEecccccee--eehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhh
Confidence            44555555566666666666665  3322 55566666666666655421                     112345567


Q ss_pred             CCCEEeCcCCCCCCc-CCCcCCCCCCCCEEEcccCCCCCCCC
Q 027602          168 SLRYLDLSRNFLYVV-NFGWLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       168 ~L~~L~l~~N~l~~~-~~p~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      +|..||+++|++... ....+++++.|+++.+-+|.+.+.+.
T Consensus       375 SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  375 SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            788888888887421 12367888888888888888888653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.35  E-value=1.3e-07  Score=79.85  Aligned_cols=95  Identities=19%  Similarity=0.094  Sum_probs=80.6

Q ss_pred             cccC-ccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-
Q 027602          108 GKVN-PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-  185 (221)
Q Consensus       108 g~~p-~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-  185 (221)
                      +..| ..|..+++|++|++++|.+++ .-+..|..+.++++|+|..|++...--.-|.++..|++|+|++|+++ ..-| 
T Consensus       263 ~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~  340 (498)
T KOG4237|consen  263 SICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPG  340 (498)
T ss_pred             CcChHHHHhhcccceEeccCCCccch-hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecc
Confidence            3344 358899999999999999997 66788999999999999999997544556789999999999999997 4445 


Q ss_pred             cCCCCCCCCEEEcccCCCC
Q 027602          186 WLSGLSFLEHLDFSTTRKM  204 (221)
Q Consensus       186 ~~~~l~~L~~L~l~~N~l~  204 (221)
                      .|..+.+|.+|++-.|.|.
T Consensus       341 aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cccccceeeeeehccCccc
Confidence            7888999999999999874

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.31  E-value=7.5e-08  Score=84.52  Aligned_cols=96  Identities=22%  Similarity=0.256  Sum_probs=81.1

Q ss_pred             CCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCC
Q 027602          105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNF  184 (221)
Q Consensus       105 ~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~  184 (221)
                      +=.+.+|++++.+.+|..||.+.|.+.  .+|..++.+.+|+.|.+..|++. .+|+++..|+ |..||++.|+++  .+
T Consensus       153 Nkl~~lp~~ig~~~tl~~ld~s~nei~--slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis--~i  226 (722)
T KOG0532|consen  153 NKLTSLPEEIGLLPTLAHLDVSKNEIQ--SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS--YL  226 (722)
T ss_pred             CccccCCcccccchhHHHhhhhhhhhh--hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee--ec
Confidence            334577888888888888899999888  78888888899999999999887 6788888665 899999999995  77


Q ss_pred             C-cCCCCCCCCEEEcccCCCCCC
Q 027602          185 G-WLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       185 p-~~~~l~~L~~L~l~~N~l~g~  206 (221)
                      | .|.+|+.|++|-|.+|.+..+
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             chhhhhhhhheeeeeccCCCCCC
Confidence            8 888899999999999999865

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.28  E-value=1.4e-06  Score=81.04  Aligned_cols=55  Identities=24%  Similarity=0.469  Sum_probs=26.4

Q ss_pred             CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCC
Q 027602          119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLY  180 (221)
Q Consensus       119 ~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~  180 (221)
                      +|+.|++++|.+.  .+|..+.  .+|++|++++|+++ .+|..+.  ++|++|++++|+++
T Consensus       242 ~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        242 TIQEMELSINRIT--ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             cccEEECcCCccC--cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            4455555555554  3444332  34555555555554 3444332  24555555555553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.27  E-value=5.7e-08  Score=70.93  Aligned_cols=116  Identities=18%  Similarity=0.183  Sum_probs=90.7

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCcccc-CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLL-DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG  156 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~-~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~  156 (221)
                      -+++.++|++                |.+. .+|+.|. .++.++.|++++|.++  .+|.++..++.|+.|+++.|.+.
T Consensus        53 ~el~~i~ls~----------------N~fk-~fp~kft~kf~t~t~lNl~~neis--dvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   53 YELTKISLSD----------------NGFK-KFPKKFTIKFPTATTLNLANNEIS--DVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             ceEEEEeccc----------------chhh-hCCHHHhhccchhhhhhcchhhhh--hchHHHhhhHHhhhcccccCccc
Confidence            4688899998                4554 5565554 4568999999999999  79999999999999999999998


Q ss_pred             CCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccccc
Q 027602          157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVI  215 (221)
Q Consensus       157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~  215 (221)
                       ..|+.+..+.++.+|+..+|..  ..+| .+..-+..-..+++++.+.+.-|....+++
T Consensus       114 -~~p~vi~~L~~l~~Lds~~na~--~eid~dl~~s~~~al~~lgnepl~~~~~~klqa~k  170 (177)
T KOG4579|consen  114 -AEPRVIAPLIKLDMLDSPENAR--AEIDVDLFYSSLPALIKLGNEPLGDETKKKLQALK  170 (177)
T ss_pred             -cchHHHHHHHhHHHhcCCCCcc--ccCcHHHhccccHHHHHhcCCcccccCcccccccC
Confidence             6788888899999999999987  5676 433223334456688888888887766665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.25  E-value=1.3e-06  Score=51.48  Aligned_cols=36  Identities=31%  Similarity=0.424  Sum_probs=19.6

Q ss_pred             CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602          119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG  156 (221)
Q Consensus       119 ~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~  156 (221)
                      +|++|++++|+++  .+|+.+.++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCC
Confidence            4555666666665  45555555566666666655554

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.24  E-value=2e-07  Score=76.46  Aligned_cols=91  Identities=26%  Similarity=0.291  Sum_probs=67.2

Q ss_pred             ccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-
Q 027602          107 VGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-  185 (221)
Q Consensus       107 ~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-  185 (221)
                      +|..-.++.....|+++||++|.++  .+..+..-+|+++.|++++|.+. .+ ..+..+++|+.||+++|.++  .+. 
T Consensus       273 ~G~~~~~~dTWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls--~~~G  346 (490)
T KOG1259|consen  273 NGSALVSADTWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA--ECVG  346 (490)
T ss_pred             CCceEEecchHhhhhhccccccchh--hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH--hhhh
Confidence            3444445555678999999999999  78888888999999999999987 33 45888999999999999875  222 


Q ss_pred             cCCCCCCCCEEEcccCCC
Q 027602          186 WLSGLSFLEHLDFSTTRK  203 (221)
Q Consensus       186 ~~~~l~~L~~L~l~~N~l  203 (221)
                      +-..+.+++.|.+++|.+
T Consensus       347 wh~KLGNIKtL~La~N~i  364 (490)
T KOG1259|consen  347 WHLKLGNIKTLKLAQNKI  364 (490)
T ss_pred             hHhhhcCEeeeehhhhhH
Confidence            333344555555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.17  E-value=2.2e-06  Score=50.40  Aligned_cols=37  Identities=35%  Similarity=0.445  Sum_probs=22.6

Q ss_pred             CCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCC
Q 027602          143 GNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLY  180 (221)
Q Consensus       143 ~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~  180 (221)
                      ++|++|++++|+++ .+|+.++++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35666666666666 45555666666666666666664

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.04  E-value=2.1e-06  Score=81.03  Aligned_cols=87  Identities=30%  Similarity=0.370  Sum_probs=74.2

Q ss_pred             cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCC
Q 027602          113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLS  191 (221)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~  191 (221)
                      .|..++.|++|||++|.--+ .+|..++.+-+|++|++++..+. .+|..++++..|.+|++..+... ..+| ....+.
T Consensus       566 ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~  642 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRL-ESIPGILLELQ  642 (889)
T ss_pred             HHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccc-ccccchhhhcc
Confidence            47789999999999877666 89999999999999999999998 89999999999999999988754 4456 444599


Q ss_pred             CCCEEEcccCC
Q 027602          192 FLEHLDFSTTR  202 (221)
Q Consensus       192 ~L~~L~l~~N~  202 (221)
                      +|++|.+..-.
T Consensus       643 ~Lr~L~l~~s~  653 (889)
T KOG4658|consen  643 SLRVLRLPRSA  653 (889)
T ss_pred             cccEEEeeccc
Confidence            99999987654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.97  E-value=3.7e-07  Score=80.30  Aligned_cols=100  Identities=26%  Similarity=0.379  Sum_probs=57.3

Q ss_pred             ccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC-------
Q 027602          109 KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV-------  181 (221)
Q Consensus       109 ~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~-------  181 (221)
                      .+|+.+.++..|+.||++.|+++  .+|..++.++ |+.|-+++|+++ .+|+.++.+..|..||.+.|.+..       
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~  187 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGY  187 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhh
Confidence            45566666666666666666666  5566666554 566666666654 455555555555555555554420       


Q ss_pred             --------------cCCC-cCCCCCCCCEEEcccCCCCCCCCcccccc
Q 027602          182 --------------VNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSV  214 (221)
Q Consensus       182 --------------~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~  214 (221)
                                    ..+| ++..+ .|..||++.|+++- ||..+..+
T Consensus       188 l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~-iPv~fr~m  233 (722)
T KOG0532|consen  188 LTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISY-LPVDFRKM  233 (722)
T ss_pred             HHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceee-cchhhhhh
Confidence                          1233 44422 36667777777763 66665444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.94  E-value=3.6e-07  Score=82.48  Aligned_cols=90  Identities=26%  Similarity=0.272  Sum_probs=70.8

Q ss_pred             cCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccc-cCCCCCCCEEeCcCCCCCCcCCCcCC
Q 027602          110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQ-LGNLSSLRYLDLSRNFLYVVNFGWLS  188 (221)
Q Consensus       110 ~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~-l~~l~~L~~L~l~~N~l~~~~~p~~~  188 (221)
                      +..++.-++.|+.|+|++|+++  .+. .+..+++|++|||++|.+. .+|.- ..++. |+.|.+++|.++  .+..+.
T Consensus       179 mD~SLqll~ale~LnLshNk~~--~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~--tL~gie  251 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFT--KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT--TLRGIE  251 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhh--hhH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH--hhhhHH
Confidence            3455666788999999999998  454 6888999999999999987 56642 22333 899999999884  566778


Q ss_pred             CCCCCCEEEcccCCCCCC
Q 027602          189 GLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       189 ~l~~L~~L~l~~N~l~g~  206 (221)
                      ++.+|+.||++.|-+.|-
T Consensus       252 ~LksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  252 NLKSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             hhhhhhccchhHhhhhcc
Confidence            889999999999988763

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.89  E-value=6.4e-06  Score=71.17  Aligned_cols=89  Identities=35%  Similarity=0.397  Sum_probs=46.7

Q ss_pred             ccCccccCCC-CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcC
Q 027602          109 KVNPSLLDLE-HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWL  187 (221)
Q Consensus       109 ~~p~~l~~l~-~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~  187 (221)
                      .+++....++ +|+.|++++|.+.  .+|..+..++.|+.|++++|+++ .+|...+.++.|+.|++++|++.  .+|..
T Consensus       130 ~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~--~l~~~  204 (394)
T COG4886         130 DIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS--DLPPE  204 (394)
T ss_pred             cCccccccchhhcccccccccchh--hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc--cCchh
Confidence            3444444443 5666666666665  45555555666666666666655 44444445555566666666553  44422


Q ss_pred             -CCCCCCCEEEcccCC
Q 027602          188 -SGLSFLEHLDFSTTR  202 (221)
Q Consensus       188 -~~l~~L~~L~l~~N~  202 (221)
                       .....|+++.+++|.
T Consensus       205 ~~~~~~L~~l~~~~N~  220 (394)
T COG4886         205 IELLSALEELDLSNNS  220 (394)
T ss_pred             hhhhhhhhhhhhcCCc
Confidence             233445555555553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.85  E-value=5.6e-06  Score=71.57  Aligned_cols=67  Identities=36%  Similarity=0.605  Sum_probs=50.1

Q ss_pred             ccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCC
Q 027602          109 KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF  178 (221)
Q Consensus       109 ~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~  178 (221)
                      .+|..+.+++.|+.|++++|+++  .+|.....++.|+.|++++|++. .+|..+..+..|+.+++++|.
T Consensus       154 ~l~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         154 SLPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hhhhhhhccccccccccCCchhh--hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            55566788889999999999988  67776667788888888888887 566655555556666666663

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.80  E-value=1.1e-05  Score=70.42  Aligned_cols=91  Identities=29%  Similarity=0.367  Sum_probs=63.7

Q ss_pred             ccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCC
Q 027602          112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLS  191 (221)
Q Consensus       112 ~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~  191 (221)
                      ..+..+++|+.|++..|.+.  .+...+..+++|++|++++|.++..  ..+..++.|+.|++++|.+.  .+..+..+.
T Consensus        89 ~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~--~~~~~~~l~  162 (414)
T KOG0531|consen   89 NHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS--DISGLESLK  162 (414)
T ss_pred             cccccccceeeeeccccchh--hcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch--hccCCccch
Confidence            34666777888888888887  4544466677888888888887633  24556666788888888874  566666677


Q ss_pred             CCCEEEcccCCCCCCCC
Q 027602          192 FLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       192 ~L~~L~l~~N~l~g~ip  208 (221)
                      +|+.+++++|.++..-+
T Consensus       163 ~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  163 SLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             hhhcccCCcchhhhhhh
Confidence            78888888887765433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.75  E-value=1.8e-06  Score=63.22  Aligned_cols=87  Identities=25%  Similarity=0.317  Sum_probs=71.0

Q ss_pred             ccCCCCCcEEeCccCCCCCCccccccc-CCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCC
Q 027602          114 LLDLEHLSYLDLSFNDFQGVQIPRFIG-SMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSF  192 (221)
Q Consensus       114 l~~l~~L~~L~L~~n~l~g~~ip~~~~-~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~  192 (221)
                      +....+|+..+|++|.+.  .+|+.|. ..+..+.+++++|.++ .+|.++..++.|+.|+++.|.+. ..+..+..+.+
T Consensus        49 l~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~  124 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIK  124 (177)
T ss_pred             HhCCceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence            445567888899999999  6787765 4568999999999998 78999999999999999999996 44435556888


Q ss_pred             CCEEEcccCCCC
Q 027602          193 LEHLDFSTTRKM  204 (221)
Q Consensus       193 L~~L~l~~N~l~  204 (221)
                      +..|+..+|.+.
T Consensus       125 l~~Lds~~na~~  136 (177)
T KOG4579|consen  125 LDMLDSPENARA  136 (177)
T ss_pred             HHHhcCCCCccc
Confidence            889988888764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.71  E-value=2.4e-05  Score=62.81  Aligned_cols=67  Identities=21%  Similarity=0.189  Sum_probs=32.4

Q ss_pred             ccCCCCCcEEEccCC--cCCCCCccccCCCCCCCEEeCcCCCCCC-cCCCcCCCCCCCCEEEcccCCCCC
Q 027602          139 IGSMGNQKYLNLLGS--QFGGVIPHQLGNLSSLRYLDLSRNFLYV-VNFGWLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       139 ~~~l~~L~~L~l~~N--~l~g~~p~~l~~l~~L~~L~l~~N~l~~-~~~p~~~~l~~L~~L~l~~N~l~g  205 (221)
                      +..|++|+.|.++.|  +.++.++.....+++|+++++++|++.. ..++.+..+.+|..|++.+|..++
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence            344555555555555  4444444444444555555555555531 112233444555555555555444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=1.7e-05  Score=67.95  Aligned_cols=60  Identities=20%  Similarity=0.166  Sum_probs=28.2

Q ss_pred             CCCcEEEccCCcCCCCCc--cccCCCCCCCEEeCcCCCCCCcCCCcC------CCCCCCCEEEcccCCC
Q 027602          143 GNQKYLNLLGSQFGGVIP--HQLGNLSSLRYLDLSRNFLYVVNFGWL------SGLSFLEHLDFSTTRK  203 (221)
Q Consensus       143 ~~L~~L~l~~N~l~g~~p--~~l~~l~~L~~L~l~~N~l~~~~~p~~------~~l~~L~~L~l~~N~l  203 (221)
                      ..|+.|+|++|.+. ..+  ...+.++.|..|+++.+.+.....|..      ..+++|++|++..|++
T Consensus       246 ~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  246 QTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            34444455444443 122  233445555555555555543333322      2345666666666665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.53  E-value=0.00014  Score=56.63  Aligned_cols=84  Identities=27%  Similarity=0.244  Sum_probs=60.5

Q ss_pred             cccCCCCCcEEeCccCCCCCCccccccc-CCCCCcEEEccCCcCCCCCc--cccCCCCCCCEEeCcCCCCCCcCCC----
Q 027602          113 SLLDLEHLSYLDLSFNDFQGVQIPRFIG-SMGNQKYLNLLGSQFGGVIP--HQLGNLSSLRYLDLSRNFLYVVNFG----  185 (221)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~-~l~~L~~L~l~~N~l~g~~p--~~l~~l~~L~~L~l~~N~l~~~~~p----  185 (221)
                      .|..++.|.+|.+.+|+++  .|.+.+. .+++|+.|.+.+|.+. .+-  ..+..+++|++|.+-+|... ..--    
T Consensus        59 ~lp~l~rL~tLll~nNrIt--~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~y  134 (233)
T KOG1644|consen   59 NLPHLPRLHTLLLNNNRIT--RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLY  134 (233)
T ss_pred             cCCCccccceEEecCCcce--eeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchh-cccCceeE
Confidence            3667888899999999998  4554443 4677899999998875 221  34667788999999888875 2221    


Q ss_pred             cCCCCCCCCEEEccc
Q 027602          186 WLSGLSFLEHLDFST  200 (221)
Q Consensus       186 ~~~~l~~L~~L~l~~  200 (221)
                      .+..+++|++||+.+
T Consensus       135 vl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  135 VLYKLPSLRTLDFQK  149 (233)
T ss_pred             EEEecCcceEeehhh
Confidence            456788899888764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.41  E-value=7.1e-05  Score=70.92  Aligned_cols=91  Identities=29%  Similarity=0.332  Sum_probs=75.3

Q ss_pred             CCCCcEEeCccCC--CCCCccc-ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCC
Q 027602          117 LEHLSYLDLSFND--FQGVQIP-RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSF  192 (221)
Q Consensus       117 l~~L~~L~L~~n~--l~g~~ip-~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~  192 (221)
                      .+.|++|-+..|.  +.  .++ ..|..++.|+.||+++|.=-+.+|..++.+-+|++|+++...++  .+| .+.++..
T Consensus       544 ~~~L~tLll~~n~~~l~--~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~  619 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLL--EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKK  619 (889)
T ss_pred             CCccceEEEeecchhhh--hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHh
Confidence            3478899998886  44  444 44788999999999998877799999999999999999999995  666 8899999


Q ss_pred             CCEEEcccCCCCCCCCccc
Q 027602          193 LEHLDFSTTRKMGFTDTKL  211 (221)
Q Consensus       193 L~~L~l~~N~l~g~ip~~~  211 (221)
                      |.+|++..+.....+|...
T Consensus       620 L~~Lnl~~~~~l~~~~~i~  638 (889)
T KOG4658|consen  620 LIYLNLEVTGRLESIPGIL  638 (889)
T ss_pred             hheeccccccccccccchh
Confidence            9999999887666665433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.35  E-value=0.00025  Score=55.25  Aligned_cols=87  Identities=20%  Similarity=0.167  Sum_probs=67.5

Q ss_pred             CCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC-cCCCcCCCCCCCCE
Q 027602          117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV-VNFGWLSGLSFLEH  195 (221)
Q Consensus       117 l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~-~~~p~~~~l~~L~~  195 (221)
                      +.+...+|+++|.+-  .+ +.+..++.|.+|.+.+|+++..-|.--..+++|+.|.+.+|++.. +.+..+..++.|++
T Consensus        41 ~d~~d~iDLtdNdl~--~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR--KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchh--hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            456778899999987  33 447888999999999999985555433456889999999998842 33446778899999


Q ss_pred             EEcccCCCCCC
Q 027602          196 LDFSTTRKMGF  206 (221)
Q Consensus       196 L~l~~N~l~g~  206 (221)
                      |.+-+|..+-.
T Consensus       118 Ltll~Npv~~k  128 (233)
T KOG1644|consen  118 LTLLGNPVEHK  128 (233)
T ss_pred             eeecCCchhcc
Confidence            99999987653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.33  E-value=4.4e-06  Score=75.71  Aligned_cols=96  Identities=28%  Similarity=0.241  Sum_probs=73.6

Q ss_pred             CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602          102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                      ++|++...-  .+..+++|+.|||++|.+.  .+|..-..--+|+.|.+.+|.++. + ..+.++.+|+.||++.|-+. 
T Consensus       195 shNk~~~v~--~Lr~l~~LkhLDlsyN~L~--~vp~l~~~gc~L~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~-  267 (1096)
T KOG1859|consen  195 SHNKFTKVD--NLRRLPKLKHLDLSYNCLR--HVPQLSMVGCKLQLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLS-  267 (1096)
T ss_pred             chhhhhhhH--HHHhcccccccccccchhc--cccccchhhhhheeeeecccHHHh-h-hhHHhhhhhhccchhHhhhh-
Confidence            346776443  6788999999999999999  787643322359999999999873 2 46788999999999999886 


Q ss_pred             cCC--CcCCCCCCCCEEEcccCCCC
Q 027602          182 VNF--GWLSGLSFLEHLDFSTTRKM  204 (221)
Q Consensus       182 ~~~--p~~~~l~~L~~L~l~~N~l~  204 (221)
                      +.-  ..+..+..|+.|.|.+|.+-
T Consensus       268 ~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  268 EHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cchhhhHHHHHHHHHHHhhcCCccc
Confidence            222  24556788899999999874

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=8.9e-05  Score=63.70  Aligned_cols=89  Identities=25%  Similarity=0.310  Sum_probs=61.9

Q ss_pred             ccCCCCCcEEeCccCCCCCCccc--ccccCCCCCcEEEccCCcCCCC-Cccc-----cCCCCCCCEEeCcCCCCCCcCCC
Q 027602          114 LLDLEHLSYLDLSFNDFQGVQIP--RFIGSMGNQKYLNLLGSQFGGV-IPHQ-----LGNLSSLRYLDLSRNFLYVVNFG  185 (221)
Q Consensus       114 l~~l~~L~~L~L~~n~l~g~~ip--~~~~~l~~L~~L~l~~N~l~g~-~p~~-----l~~l~~L~~L~l~~N~l~~~~~p  185 (221)
                      ...+..|+.|||++|.+-  ..+  ...+.++.|..|+++.+.+... .|+.     ...+++|++|++..|++.  ..+
T Consensus       242 ~~i~~~L~~LdLs~N~li--~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~--~w~  317 (505)
T KOG3207|consen  242 TKILQTLQELDLSNNNLI--DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR--DWR  317 (505)
T ss_pred             hhhhhHHhhccccCCccc--ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc--ccc
Confidence            345678888899888877  344  4467788888888888887532 2322     245688999999999884  444


Q ss_pred             ---cCCCCCCCCEEEcccCCCCCC
Q 027602          186 ---WLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       186 ---~~~~l~~L~~L~l~~N~l~g~  206 (221)
                         .+..+.+|++|....|.|+-+
T Consensus       318 sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  318 SLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccchhhccchhhhhhccccccccc
Confidence               344466778888778877654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.28  E-value=7.7e-05  Score=65.11  Aligned_cols=87  Identities=26%  Similarity=0.310  Sum_probs=72.2

Q ss_pred             cCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCC
Q 027602          115 LDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLE  194 (221)
Q Consensus       115 ~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~  194 (221)
                      ..+..++.+.++.|.+.  .+-..+..+++|+.+++.+|.+.+ +...+..+++|++|++++|.++  .+..+..++.|+
T Consensus        69 ~~l~~l~~l~l~~n~i~--~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~--~i~~l~~l~~L~  143 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIA--KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT--KLEGLSTLTLLK  143 (414)
T ss_pred             HHhHhHHhhccchhhhh--hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc--cccchhhccchh
Confidence            45677888889999988  555567889999999999999974 4333778999999999999994  777777888899


Q ss_pred             EEEcccCCCCCC
Q 027602          195 HLDFSTTRKMGF  206 (221)
Q Consensus       195 ~L~l~~N~l~g~  206 (221)
                      .|++++|.++..
T Consensus       144 ~L~l~~N~i~~~  155 (414)
T KOG0531|consen  144 ELNLSGNLISDI  155 (414)
T ss_pred             hheeccCcchhc
Confidence            999999999863

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.00023  Score=58.62  Aligned_cols=88  Identities=22%  Similarity=0.146  Sum_probs=57.3

Q ss_pred             CCCCCcEEeCccCCCCC-CcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCC
Q 027602          116 DLEHLSYLDLSFNDFQG-VQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFL  193 (221)
Q Consensus       116 ~l~~L~~L~L~~n~l~g-~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L  193 (221)
                      ..+.++.+||.+|.++. ..|-..+.+||.|++|+++.|.+...|-..-....+|+.|-+.+..+...... .+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            35677888888888883 02333456788888888888887644322113456788888877776533333 44557777


Q ss_pred             CEEEcccCCC
Q 027602          194 EHLDFSTTRK  203 (221)
Q Consensus       194 ~~L~l~~N~l  203 (221)
                      +.|+++.|.+
T Consensus       149 telHmS~N~~  158 (418)
T KOG2982|consen  149 TELHMSDNSL  158 (418)
T ss_pred             hhhhhccchh
Confidence            7777777744

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.90  E-value=0.00045  Score=63.98  Aligned_cols=95  Identities=24%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             cCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC-CCccccCCCCCCCEEeCcCCCCCCcC-CC--
Q 027602          110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG-VIPHQLGNLSSLRYLDLSRNFLYVVN-FG--  185 (221)
Q Consensus       110 ~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g-~~p~~l~~l~~L~~L~l~~N~l~~~~-~p--  185 (221)
                      +..-..++++|..||+++.+++  .+ ..++++++|+.|.+.+=.+.. ..-..+.+|++|+.||+|..+..... +.  
T Consensus       165 F~~lc~sFpNL~sLDIS~TnI~--nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~q  241 (699)
T KOG3665|consen  165 FSQLCASFPNLRSLDISGTNIS--NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQ  241 (699)
T ss_pred             HHHHhhccCccceeecCCCCcc--Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHH
Confidence            4444568899999999999998  34 668899999999887766642 22246778999999999987764232 11  


Q ss_pred             --cC-CCCCCCCEEEcccCCCCCCC
Q 027602          186 --WL-SGLSFLEHLDFSTTRKMGFT  207 (221)
Q Consensus       186 --~~-~~l~~L~~L~l~~N~l~g~i  207 (221)
                        +. ..+++|+.||.+++.+++.+
T Consensus       242 Ylec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  242 YLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HHHhcccCccccEEecCCcchhHHH
Confidence              12 24899999999988887754

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.73  E-value=0.00066  Score=54.69  Aligned_cols=83  Identities=28%  Similarity=0.217  Sum_probs=59.4

Q ss_pred             cccCCCCCcEEeCccC--CCCCCcccccccCCCCCcEEEccCCcCCCCCccc---cCCCCCCCEEeCcCCCCCCcCCC--
Q 027602          113 SLLDLEHLSYLDLSFN--DFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQ---LGNLSSLRYLDLSRNFLYVVNFG--  185 (221)
Q Consensus       113 ~l~~l~~L~~L~L~~n--~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~---l~~l~~L~~L~l~~N~l~~~~~p--  185 (221)
                      .+..|++|+.|.++.|  ++++ .++.-...+++|+++++++|++.  ++..   +..+.+|..|++.+|..+...=.  
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre  136 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKSLDLFNCSVTNLDDYRE  136 (260)
T ss_pred             cCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCccc--cccccchhhhhcchhhhhcccCCccccccHHH
Confidence            3556789999999999  7776 56655566799999999999986  2443   45567888999998876521111  


Q ss_pred             -cCCCCCCCCEEEc
Q 027602          186 -WLSGLSFLEHLDF  198 (221)
Q Consensus       186 -~~~~l~~L~~L~l  198 (221)
                       .|.-+++|++|+-
T Consensus       137 ~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  137 KVFLLLPSLKYLDG  150 (260)
T ss_pred             HHHHHhhhhccccc
Confidence             3445778877753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.24  E-value=0.00062  Score=57.04  Aligned_cols=92  Identities=24%  Similarity=0.211  Sum_probs=65.5

Q ss_pred             ccccCCCCCcEEeCccCCCCCC---cccccccCCCCCcEEEccCCcCCCCCc----ccc-CCCCCCCEEeCcCCCCCCcC
Q 027602          112 PSLLDLEHLSYLDLSFNDFQGV---QIPRFIGSMGNQKYLNLLGSQFGGVIP----HQL-GNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       112 ~~l~~l~~L~~L~L~~n~l~g~---~ip~~~~~l~~L~~L~l~~N~l~g~~p----~~l-~~l~~L~~L~l~~N~l~~~~  183 (221)
                      ..+..+++|++|||+.|-++-.   .+...++.+++|+.++++++.+...-.    ..+ ...++|+.+.+.+|.++...
T Consensus       207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da  286 (382)
T KOG1909|consen  207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA  286 (382)
T ss_pred             HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence            4567789999999999988730   133556778889999999988764322    122 23678999999999886221


Q ss_pred             C---C-cCCCCCCCCEEEcccCCC
Q 027602          184 F---G-WLSGLSFLEHLDFSTTRK  203 (221)
Q Consensus       184 ~---p-~~~~l~~L~~L~l~~N~l  203 (221)
                      .   . .+...+.|..|+|++|.+
T Consensus       287 ~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  287 ALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHHhcchhhHHhcCCcccc
Confidence            1   1 344578899999999998

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.14  E-value=0.0025  Score=53.56  Aligned_cols=10  Identities=20%  Similarity=0.478  Sum_probs=6.3

Q ss_pred             cEEEEEcCCC
Q 027602           79 HILELNLRNP   88 (221)
Q Consensus        79 ~v~~l~l~~~   88 (221)
                      +++.++|+.+
T Consensus        93 ~L~~ldLSDN  102 (382)
T KOG1909|consen   93 KLQKLDLSDN  102 (382)
T ss_pred             ceeEeecccc
Confidence            5666666664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.08  E-value=0.0017  Score=31.97  Aligned_cols=20  Identities=25%  Similarity=0.180  Sum_probs=13.5

Q ss_pred             CCCEEEcccCCCCCCCCcccc
Q 027602          192 FLEHLDFSTTRKMGFTDTKLV  212 (221)
Q Consensus       192 ~L~~L~l~~N~l~g~ip~~~~  212 (221)
                      +|++|++++|+|+ .||..+.
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            4677777777777 6776543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.03  E-value=0.0031  Score=58.56  Aligned_cols=87  Identities=21%  Similarity=0.238  Sum_probs=62.5

Q ss_pred             CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC-cCCCcCCCCCCCC
Q 027602          116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV-VNFGWLSGLSFLE  194 (221)
Q Consensus       116 ~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~-~~~p~~~~l~~L~  194 (221)
                      .||+|+.|.+.+-.+.....-....++++|..||+++..++- + ..++.+++|+.|.+.+=.+.. ..+-.+.++++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            468888888888777541233344578889999999988763 3 667888888888887655542 2233678899999


Q ss_pred             EEEcccCCCC
Q 027602          195 HLDFSTTRKM  204 (221)
Q Consensus       195 ~L~l~~N~l~  204 (221)
                      +||+|..+..
T Consensus       224 vLDIS~~~~~  233 (699)
T KOG3665|consen  224 VLDISRDKNN  233 (699)
T ss_pred             eeeccccccc
Confidence            9999986554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.02  E-value=0.0025  Score=31.35  Aligned_cols=18  Identities=33%  Similarity=0.689  Sum_probs=8.1

Q ss_pred             CcEEEccCCcCCCCCcccc
Q 027602          145 QKYLNLLGSQFGGVIPHQL  163 (221)
Q Consensus       145 L~~L~l~~N~l~g~~p~~l  163 (221)
                      |++|++++|+++ .+|+.+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444444444444 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.85  E-value=0.031  Score=48.66  Aligned_cols=30  Identities=20%  Similarity=0.146  Sum_probs=15.6

Q ss_pred             CCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccC
Q 027602          168 SLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTT  201 (221)
Q Consensus       168 ~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N  201 (221)
                      +|++|++++|...  .+| .+.  .+|++|+++.|
T Consensus       157 SLk~L~Is~c~~i--~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNI--ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCcc--cCccccc--ccCcEEEeccc
Confidence            5666666665542  222 222  36666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.43  E-value=0.0043  Score=51.38  Aligned_cols=75  Identities=24%  Similarity=0.318  Sum_probs=48.6

Q ss_pred             CCCcc--ccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCc-cccCCCCCCCEEeCcCCCC
Q 027602          104 SMLVG--KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIP-HQLGNLSSLRYLDLSRNFL  179 (221)
Q Consensus       104 n~l~g--~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p-~~l~~l~~L~~L~l~~N~l  179 (221)
                      |.++.  .+..-+.+++.|++|+++.|.++. .|-..-..+.+|+.|-|.+..+...-- ..+..++.++.|.++.|++
T Consensus        81 N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen   81 NLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             chhccHHHHHHHHhcCccceEeeccCCcCCC-ccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            45552  344456788999999999998885 443221355678888888877654322 3345667777777777743

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.98  E-value=0.063  Score=46.78  Aligned_cols=51  Identities=18%  Similarity=0.234  Sum_probs=26.9

Q ss_pred             CCcEEeCcc-CCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCC
Q 027602          119 HLSYLDLSF-NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFL  179 (221)
Q Consensus       119 ~L~~L~L~~-n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l  179 (221)
                      +|+.|.+++ +.++  .+|..+.  ++|++|.+++|.....+|.      +|+.|++..|..
T Consensus        73 sLtsL~Lsnc~nLt--sLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~  124 (426)
T PRK15386         73 ELTEITIENCNNLT--TLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLEIKGSAT  124 (426)
T ss_pred             CCcEEEccCCCCcc--cCCchhh--hhhhheEccCccccccccc------ccceEEeCCCCC
Confidence            466677665 3443  4555442  4677777776622223443      355566655443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.97  E-value=0.0022  Score=53.07  Aligned_cols=57  Identities=23%  Similarity=0.092  Sum_probs=28.1

Q ss_pred             CCCCCcEEEccCCc-CCCCCccccCCCCCCCEEeCcCCCCCCcCCC----cCCCCCCCCEEEccc
Q 027602          141 SMGNQKYLNLLGSQ-FGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG----WLSGLSFLEHLDFST  200 (221)
Q Consensus       141 ~l~~L~~L~l~~N~-l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p----~~~~l~~L~~L~l~~  200 (221)
                      .+++|.+|||+++. ++...-..+.+++.|++|.++.++.   .+|    .+...++|.+|++.+
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD---IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC---CChHHeeeeccCcceEEEEecc
Confidence            34555566665543 2222223344555666666655542   233    344456666665443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.77  E-value=0.017  Score=47.43  Aligned_cols=110  Identities=15%  Similarity=0.167  Sum_probs=72.2

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccc----cCccccCCCCCcEEeCccCCCCCC--ccc-------ccccCCCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGK----VNPSLLDLEHLSYLDLSFNDFQGV--QIP-------RFIGSMGN  144 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~----~p~~l~~l~~L~~L~L~~n~l~g~--~ip-------~~~~~l~~  144 (221)
                      ..++.++|++                |.+...    +-..+.+-.+|++.+++.-.....  .++       +.+-++++
T Consensus        30 d~~~evdLSG----------------NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~   93 (388)
T COG5238          30 DELVEVDLSG----------------NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPR   93 (388)
T ss_pred             cceeEEeccC----------------CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCc
Confidence            4678888888                455432    333455667777777765432210  223       34556889


Q ss_pred             CcEEEccCCcCCCCCcccc----CCCCCCCEEeCcCCCCCCcCCC--c-------------CCCCCCCCEEEcccCCCCC
Q 027602          145 QKYLNLLGSQFGGVIPHQL----GNLSSLRYLDLSRNFLYVVNFG--W-------------LSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       145 L~~L~l~~N~l~g~~p~~l----~~l~~L~~L~l~~N~l~~~~~p--~-------------~~~l~~L~~L~l~~N~l~g  205 (221)
                      |+..+||+|.|....|+.+    ..-+.|.+|.+++|.+  |++.  .             ...-+.|+++..+.|++..
T Consensus        94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl--Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen  171 (388)
T COG5238          94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL--GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN  171 (388)
T ss_pred             ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC--CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence            9999999999987777654    4557899999999987  4442  1             2235678888888887753

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.72  E-value=0.0005  Score=54.84  Aligned_cols=63  Identities=14%  Similarity=0.078  Sum_probs=35.9

Q ss_pred             ccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCC
Q 027602          114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFL  179 (221)
Q Consensus       114 l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l  179 (221)
                      +.-++.+..|+++.|.+.  ..|..++....+..+++..|..+ ..|.+++..+.++++++..|.|
T Consensus        61 ~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   61 FSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             hHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence            344455555566666555  45555555555555555555554 4555666666666666655554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.91  E-value=0.036  Score=25.36  Aligned_cols=13  Identities=46%  Similarity=0.524  Sum_probs=5.2

Q ss_pred             CCcEEeCccCCCC
Q 027602          119 HLSYLDLSFNDFQ  131 (221)
Q Consensus       119 ~L~~L~L~~n~l~  131 (221)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555544

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.69  E-value=0.0027  Score=52.09  Aligned_cols=62  Identities=27%  Similarity=0.217  Sum_probs=40.8

Q ss_pred             cCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCc--cccCCCCCCCEEeCcCCCCC
Q 027602          115 LDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIP--HQLGNLSSLRYLDLSRNFLY  180 (221)
Q Consensus       115 ~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p--~~l~~l~~L~~L~l~~N~l~  180 (221)
                      ..|+.|++|.|+-|.++.  + ..+..+++|++|+|..|.+.. +-  .-+.++++|+.|-|..|.-.
T Consensus        38 ~kMp~lEVLsLSvNkIss--L-~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISS--L-APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             HhcccceeEEeecccccc--c-hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcc
Confidence            456777777777777773  3 335667777777777777652 22  23456777777777777765

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.42  E-value=0.0042  Score=50.99  Aligned_cols=58  Identities=22%  Similarity=0.234  Sum_probs=33.6

Q ss_pred             ccCCCCCcEEeCccCCCCCCccc--ccccCCCCCcEEEccCCcCCCCCccc-----cCCCCCCCEEe
Q 027602          114 LLDLEHLSYLDLSFNDFQGVQIP--RFIGSMGNQKYLNLLGSQFGGVIPHQ-----LGNLSSLRYLD  173 (221)
Q Consensus       114 l~~l~~L~~L~L~~n~l~g~~ip--~~~~~l~~L~~L~l~~N~l~g~~p~~-----l~~l~~L~~L~  173 (221)
                      +..++.|++|+|..|.|..  +.  .-+.++++|+.|.|..|.-.|.-+..     +.-|++|+.||
T Consensus        59 l~rCtrLkElYLRkN~I~s--ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   59 LQRCTRLKELYLRKNCIES--LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHHHHHHHHhccccc--HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            4556667777777776663  32  22456667777777777666554432     23455666553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=93.16  E-value=0.0019  Score=53.48  Aligned_cols=90  Identities=23%  Similarity=0.173  Sum_probs=62.4

Q ss_pred             CCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCC-CCCcCCC-cCCCCCCCCE
Q 027602          118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF-LYVVNFG-WLSGLSFLEH  195 (221)
Q Consensus       118 ~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~-l~~~~~p-~~~~l~~L~~  195 (221)
                      +.|+.|||++..++....-..+..+.+|+.|.+.++++...+-..+.+-.+|+.++++... ++.-... .+..++.|+.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3488888888877742333445667888888888888887777777777888888887653 4322222 4556788888


Q ss_pred             EEcccCCCCCCC
Q 027602          196 LDFSTTRKMGFT  207 (221)
Q Consensus       196 L~l~~N~l~g~i  207 (221)
                      |+++-+.++-++
T Consensus       265 LNlsWc~l~~~~  276 (419)
T KOG2120|consen  265 LNLSWCFLFTEK  276 (419)
T ss_pred             cCchHhhccchh
Confidence            888877666543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.01  E-value=0.0026  Score=50.93  Aligned_cols=87  Identities=13%  Similarity=0.075  Sum_probs=63.3

Q ss_pred             cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCC
Q 027602          113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLS  191 (221)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~  191 (221)
                      ++..+...+.||++.|++.  .+-..+.-++.+..++++.|.+. .+|..++.+..++.++++.|..+  ..| +++..+
T Consensus        37 ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~--~~p~s~~k~~  111 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS--QQPKSQKKEP  111 (326)
T ss_pred             hhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh--hCCccccccC
Confidence            4566677778888888776  45556666777788888887775 57777777777788888877774  445 777778


Q ss_pred             CCCEEEcccCCCC
Q 027602          192 FLEHLDFSTTRKM  204 (221)
Q Consensus       192 ~L~~L~l~~N~l~  204 (221)
                      .++++++-+|.|+
T Consensus       112 ~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  112 HPKKNEQKKTEFF  124 (326)
T ss_pred             CcchhhhccCcch
Confidence            8888777777654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.55  E-value=0.55  Score=33.32  Aligned_cols=88  Identities=11%  Similarity=0.221  Sum_probs=46.3

Q ss_pred             CCccccCccccCCCCCcEEeCccCCCCCCccc-ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIP-RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       105 ~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip-~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      .+...-...|.++++|+.+.+..+ +.  .++ ..+..++.++.+.+.+ .+...-...+..+++|+.+++..+ +.  .
T Consensus        22 ~~~~I~~~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~--~   94 (129)
T PF13306_consen   22 TIKKIGENAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT--E   94 (129)
T ss_dssp             T--EE-TTTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B--E
T ss_pred             CeeEeChhhccccccccccccccc-cc--ccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc--E
Confidence            344333445777878888888775 55  344 3467777888888865 332122235566888889888765 42  3


Q ss_pred             CC--cCCCCCCCCEEEccc
Q 027602          184 FG--WLSGLSFLEHLDFST  200 (221)
Q Consensus       184 ~p--~~~~l~~L~~L~l~~  200 (221)
                      ++  .+.++ +|+.+.+..
T Consensus        95 i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   95 IGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EHTTTTTT--T--EEE-TT
T ss_pred             EchhhhcCC-CceEEEECC
Confidence            33  56666 788887664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.26  E-value=0.17  Score=41.70  Aligned_cols=66  Identities=29%  Similarity=0.304  Sum_probs=42.8

Q ss_pred             cccCCCCCcEEeCccCCCCCCccccc----ccCCCCCcEEEccCCcCCCCCc-c-------------ccCCCCCCCEEeC
Q 027602          113 SLLDLEHLSYLDLSFNDFQGVQIPRF----IGSMGNQKYLNLLGSQFGGVIP-H-------------QLGNLSSLRYLDL  174 (221)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~g~~ip~~----~~~l~~L~~L~l~~N~l~g~~p-~-------------~l~~l~~L~~L~l  174 (221)
                      .+..+++|+..+|+.|.+.. ..|+.    +.+-+.|++|.+++|.+. ++. .             ...+-+.|+.+..
T Consensus        87 aLlkcp~l~~v~LSDNAfg~-~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGS-EFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHhcCCcceeeeccccccCc-ccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            34567888888888888876 55543    455677888888888763 221 1             1223456777777


Q ss_pred             cCCCCC
Q 027602          175 SRNFLY  180 (221)
Q Consensus       175 ~~N~l~  180 (221)
                      ..|++.
T Consensus       165 grNRle  170 (388)
T COG5238         165 GRNRLE  170 (388)
T ss_pred             ccchhc
Confidence            777664

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.16  E-value=0.13  Score=26.07  Aligned_cols=14  Identities=43%  Similarity=0.489  Sum_probs=8.0

Q ss_pred             CCCcEEeCccCCCC
Q 027602          118 EHLSYLDLSFNDFQ  131 (221)
Q Consensus       118 ~~L~~L~L~~n~l~  131 (221)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45555556555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.16  E-value=0.13  Score=26.07  Aligned_cols=14  Identities=43%  Similarity=0.489  Sum_probs=8.0

Q ss_pred             CCCcEEeCccCCCC
Q 027602          118 EHLSYLDLSFNDFQ  131 (221)
Q Consensus       118 ~~L~~L~L~~n~l~  131 (221)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45555556555555

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.14  E-value=0.66  Score=32.89  Aligned_cols=84  Identities=13%  Similarity=0.201  Sum_probs=49.4

Q ss_pred             cccCCCCCcEEeCccCCCCCCccc-ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCC
Q 027602          113 SLLDLEHLSYLDLSFNDFQGVQIP-RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLS  191 (221)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~g~~ip-~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~  191 (221)
                      .|.++++|+.+.+.. .+.  .++ ..|..+++|+.+.+..+ +...-...+.++++++.+.+.+ .+....-..+..++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~--~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK--KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC-Cee--EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            467788899999874 565  444 45778889999999886 5422234567787899999976 33212222666789


Q ss_pred             CCCEEEcccC
Q 027602          192 FLEHLDFSTT  201 (221)
Q Consensus       192 ~L~~L~l~~N  201 (221)
                      +|+.+++..+
T Consensus        82 ~l~~i~~~~~   91 (129)
T PF13306_consen   82 NLKNIDIPSN   91 (129)
T ss_dssp             TECEEEETTT
T ss_pred             cccccccCcc
Confidence            9999998655

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.46  E-value=0.5  Score=23.28  Aligned_cols=16  Identities=31%  Similarity=0.283  Sum_probs=9.7

Q ss_pred             CCCCEEEcccCCCCCC
Q 027602          191 SFLEHLDFSTTRKMGF  206 (221)
Q Consensus       191 ~~L~~L~l~~N~l~g~  206 (221)
                      ++|++|++++|+|+..
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            5677778877776643

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.14  E-value=1.3  Score=22.68  Aligned_cols=14  Identities=36%  Similarity=0.453  Sum_probs=10.1

Q ss_pred             CCCCEEEcccCCCC
Q 027602          191 SFLEHLDFSTTRKM  204 (221)
Q Consensus       191 ~~L~~L~l~~N~l~  204 (221)
                      .+|++|+++.|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            56777777777774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	221
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-06

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 72/183 (39%), Gaps = 33/183 (18%)
Query: 34  CLESEREVLLRFKQDLQDPSNRLASWIGDGDCC--LWAGVICDNVTG-------HILELN 84
           C   +++ LL+ K+DL +P+  L+SW+   DCC   W GV+CD  T         +  LN
Sbjct: 3   CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 85  LRNPFNYYVQPDQFEANP--RSMLVGKVNPXXXXXXXXXXXXXXFNDFQGVQIPRFIGSM 142
           L  P   Y  P      P    + +G +                 N+  G  IP  I  +
Sbjct: 62  LPKP---YPIPSSLANLPYLNFLYIGGI-----------------NNLVG-PIPPAIAKL 100
Query: 143 GNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTR 202
               YL +  +   G IP  L  + +L  LD S N L       +S L  L  + F   R
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 203 KMG 205
             G
Sbjct: 161 ISG 163

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  134 bits (339), Expect = 2e-36
 Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 21/170 (12%)

Query: 33  GCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNLRNPFNYY 92
             L  E   L+ FK  L D  N L  W  + + C + GV C +    +  ++L +     
Sbjct: 8   QSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSS----- 59

Query: 93  VQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLG 152
                    P ++    V+ SLL L  L  L LS +   G  +  F     +   L+L  
Sbjct: 60  --------KPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGF-KCSASLTSLDLSR 109

Query: 153 SQFGGVIP--HQLGNLSSLRYLDLSRNFL-YVVNFGWLSGLSFLEHLDFS 199
           +   G +     LG+ S L++L++S N L +         L+ LE LD S
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.2 bits (178), Expect = 5e-15
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLG 164
           +  G  +P+  +   + +LD+S+N   G  IP+ IGSM     LNL  +   G IP ++G
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677

Query: 165 NLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           +L  L  LDLS N L       +S L+ L  +D S
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLG 164
            L G +  SL  L  L  L L  N  +G +IP+ +  +   + L L  +   G IP  L 
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 165 NLSSLRYLDLSRNFLYVVNFG----WLSGLSFLEHLDFS 199
           N ++L ++ LS N L     G    W+  L  L  L  S
Sbjct: 488 NCTNLNWISLSNNRLT----GEIPKWIGRLENLAILKLS 522

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.8 bits (169), Expect = 8e-14
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN 165
             G  +  L  L   +  +++   + G        + G+  +L++  +   G IP ++G+
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGG-HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654

Query: 166 LSSLRYLDLSRNFLYVVNFG----WLSGLSFLEHLDFS 199
           +  L  L+L  N +     G     +  L  L  LD S
Sbjct: 655 MPYLFILNLGHNDIS----GSIPDEVGDLRGLNILDLS 688

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFI-GSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS 175
           L+ L YL L+ N F G +IP F+ G+      L+L G+ F G +P   G+ S L  L LS
Sbjct: 268 LKSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 176 RNFLY-VVNFGWLSGLSFLEHLDFS 199
            N     +    L  +  L+ LD S
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLS 351

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 106 LVGKVNPSL--LDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL 163
             G + P+L       L  L L  N F G +IP  + +      L+L  +   G IP  L
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

Query: 164 GNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           G+LS LR L L  N L       L  +  LE L   
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
            +    +L +LD+S N+F    IP F+G     ++L++ G++  G     +   + L+ L
Sbjct: 195 DVSRCVNLEFLDVSSNNFST-GIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 173 DLSRNFLYVVNFGWL--SGLSFLEHLDFS 199
           ++S N       G +    L  L++L  +
Sbjct: 253 NISSNQFV----GPIPPLPLKSLQYLSLA 277

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 33/89 (37%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
           P L D   L +LD+S N   G    R I +    K LN+  +QF G IP     L SL+Y
Sbjct: 217 PFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIP--PLPLKSLQY 273

Query: 172 LDLSRNFLYVVNFGWLSG-LSFLEHLDFS 199
           L L+ N        +LSG    L  LD S
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLS 302

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.8 bits (156), Expect = 4e-12
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN 165
           L G++   L +  +L+++ LS N   G +IP++IG + N   L L  + F G IP +LG+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Query: 166 LSSLRYLDLSRNFL 179
             SL +LDL+ N  
Sbjct: 537 CRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 3/97 (3%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN 165
             G V P       L  L LS N+F G      +  M   K L+L  ++F G +P  L N
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365

Query: 166 LS-SLRYLDLSRNFLY--VVNFGWLSGLSFLEHLDFS 199
           LS SL  LDLS N     ++     +  + L+ L   
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLG 164
           ML G +   +  + +L  L+L  ND  G  IP  +G +     L+L  ++  G IP  + 
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701

Query: 165 NLSSLRYLDLSRNFL 179
            L+ L  +DLS N L
Sbjct: 702 ALTMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 21/116 (18%)

Query: 105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGV-------------------QIPRFIGSMGNQ 145
              G +   L D   L +LDL+ N F G                    +   +I + G +
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584

Query: 146 KYLNLLGS--QFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           K  +  G+  +F G+   QL  LS+    +++                 +  LD S
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN 165
           L G++   +  LE+L+ L LS N F G  IP  +G   +  +L+L  + F G IP  +  
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSG-NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560

Query: 166 LSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            S      ++ NF+    + ++      +    +
Sbjct: 561 QS----GKIAANFIAGKRYVYIKNDGMKKECHGA 590

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPH--Q 162
            + G +   + DL  L+ LDLS N   G +IP+ + ++     ++L  +   G IP   Q
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDG-RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725

Query: 163 LGNLSSLRY 171
                  ++
Sbjct: 726 FETFPPAKF 734

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  102 bits (256), Expect = 3e-26
 Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 29/175 (16%)

Query: 34  CLESEREVLLRFKQDLQDPSNRLASWIGDGDCC--LWAGVICDNVT--GHILELNLRNPF 89
           C   +++ LL+ K+DL +P+  L+SW+   DCC   W GV+CD  T    +  L+L    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-- 59

Query: 90  NYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLS-FNDFQGVQIPRFIGSMGNQKYL 148
                               +  SL +L +L++L +   N+  G  IP  I  +    YL
Sbjct: 60  -----------LNLPK-PYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYL 106

Query: 149 NLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG----WLSGLSFLEHLDFS 199
            +  +   G IP  L  + +L  LD S N L     G     +S L  L  + F 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNAL----SGTLPPSISSLPNLVGITFD 157

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN 165
           L GK+ P+  +L +L+++DLS N  +G       GS  N + ++L  +     +  ++G 
Sbjct: 186 LTGKIPPTFANL-NLAFVDLSRNMLEG-DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL 242

Query: 166 LSSLRYLDLSRNFLYVVNFG----WLSGLSFLEHLDFS 199
             +L  LDL  N +Y    G     L+ L FL  L+ S
Sbjct: 243 SKNLNGLDLRNNRIY----GTLPQGLTQLKFLHSLNVS 276

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 106 LVGKVNPSLLDLEHLS-YLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLG 164
           + G +  S      L   + +S N   G +IP    ++ N  +++L  +   G      G
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANL-NLAFVDLSRNMLEGDASVLFG 218

Query: 165 NLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           +  + + + L++N L   + G +     L  LD  
Sbjct: 219 SDKNTQKIHLAKNSL-AFDLGKVGLSKNLNGLDLR 252

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLG 164
           ML G  +      ++   + L+ N      + + +G   N   L+L  ++  G +P  L 
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAF-DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 165 NLSSLRYLDLSRNFL 179
            L  L  L++S N L
Sbjct: 266 QLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGN-QKYLNLLGSQFGGVIPHQL 163
            L G + PS+  L +L  +    N   G  IP   GS       + +  ++  G IP   
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 164 GNLSSLRYLDLSRNFLYVVNFG----WLSGLSFLEHLDFS 199
            NL +L ++DLSRN L     G            + +  +
Sbjct: 195 ANL-NLAFVDLSRNML----EGDASVLFGSDKNTQKIHLA 229

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
             +   ++L+ LDL  N   G  +P+ +  +     LN+  +   G IP Q GNL     
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDV 295

Query: 172 LDLSRN 177
              + N
Sbjct: 296 SAYANN 301

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 25/94 (26%), Positives = 42/94 (44%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN 165
                N     L  L  L ++ N FQ   +P     + N  +L+L   Q   + P    +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 166 LSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           LSSL+ L++S N  + ++      L+ L+ LD+S
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN 165
           L    + S      L  LDLS  + Q +       S+ +   L L G+    +       
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 166 LSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           LSSL+ L      L  +    +  L  L+ L+ +
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 8e-13
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF 178
               LDLSFN  + +       S    + L+L   +   +      +LS L  L L+ N 
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 179 LYVVNFGWLSGLSFLEHLDFS 199
           +  +  G  SGLS L+ L   
Sbjct: 88  IQSLALGAFSGLSSLQKLVAV 108

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN 165
           L    N  +  L+ L  L+++ N  Q  ++P +  ++ N ++L+L  ++   +    L  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 166 LSSLRY----LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L  +      LDLS N +  +  G    +  L  L   
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLR 208

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.1 bits (154), Expect = 7e-12
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQ-LG 164
             G  + S      L YLDLSFN      +      +   ++L+   S    +       
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 165 NLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           +L +L YLD+S     V   G  +GLS LE L  +
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
           + +   L HLS L L+ N  Q +        + + + L  + +    +    +G+L +L+
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 171 YLDLSRNFLYVVNFG-WLSGLSFLEHLDFS 199
            L+++ N +       + S L+ LEHLD S
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 3/97 (3%)

Query: 105 MLVGKVNPSLL-DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL 163
                  P +  +L +L++LDLS    + +  P    S+ + + LN+  + F  +     
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 164 GNLSSLRYLDLSRNFLYVVNFGWLSGL-SFLEHLDFS 199
             L+SL+ LD S N +       L    S L  L+ +
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSL 169
           ++ + L LE L +LD   ++ + +       S+ N  YL++  +            LSSL
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 170 RYLDLSRN-FLYVVNFGWLSGLSFLEHLDFS 199
             L ++ N F         + L  L  LD S
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQ--FGGVIPHQLGNLSSLR 170
               L+  S   L+F   +G      +  + + ++L+L  +   F G         +SL+
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 171 YLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           YLDLS N +  ++  +L GL  LEHLDF 
Sbjct: 377 YLDLSFNGVITMSSNFL-GLEQLEHLDFQ 404

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 2/90 (2%)

Query: 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF 178
            +    L++ D+    I      + N    +L+      V           ++L+L    
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315

Query: 179 LYVVNFGWLSGLSFLEHLDFSTTRKMGFTD 208
                   L  L  L              D
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN 165
           L      +   L  L  L++S N+F  +        + + + L+   +        +L +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 166 L-SSLRYLDLSRN 177
             SSL +L+L++N
Sbjct: 541 FPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 13/100 (13%), Positives = 25/100 (25%), Gaps = 9/100 (9%)

Query: 109 KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG------VIPHQ 162
            + P       L  L L  N      +   I  +   +   L+  +F             
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 163 LGNLSSLRYLDLSRNFL---YVVNFGWLSGLSFLEHLDFS 199
           L  L +L   +    +L           + L+ +      
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 5e-13
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
               L  L  L+L  N+   +   +      N   L+L+ +    +  +      +L  L
Sbjct: 68  LCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           DLS N L     G    L  L+ L  S
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLS 153

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 5e-13
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 1/89 (1%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
             +      L+ LD+ FN    +  P     +   K LNL  ++   +        ++L 
Sbjct: 42  AANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100

Query: 171 YLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            L L  N +  +          L  LD S
Sbjct: 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLS 129

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 2/104 (1%)

Query: 97  QFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG 156
                 +    G     L  L HL  L+L  N F  +        +   K ++L  +   
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLNNLN 573

Query: 157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLS-GLSFLEHLDFS 199
            +      N  SL+ L+L +N +  V           L  LD  
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGS---------QFGGVIPH 161
           N S   L  L Y  L +N+ Q +     +  + N +YLNL  S             +   
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 162 QLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
               L  L +L++  N +  +     +GL  L++L  S
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 6e-11
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +   L HL  LDL  N+       +    + N   + L  +++  +  +    + SL+ L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 173 DLSRNFLYVVNF--GWLSGLSFLEHLDFS 199
            L R  L  V+        L  L  LD S
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLS 488

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 8e-11
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSR 176
             +++ L+L+ N  + +              L++  +    + P     L  L+ L+L  
Sbjct: 24  PTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 177 NFLYVVNFGWLSGLSFLEHLDFS 199
           N L  ++    +  + L  L   
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLM 105

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV--IPHQLGNLSSLR 170
               LE++  + LS+N +  +        + + + L L       V   P     L +L 
Sbjct: 425 EWRGLENIFEIYLSYNKYLQL-TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 171 YLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            LDLS N +  +N   L GL  LE LD  
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQ 512

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 114 LLDLEHLSYLDLSFN-------DFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNL 166
           L  LE L  LDL  N                F+  + +   LNL  + F  +      +L
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 167 SSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
             L+ +DL  N L  +     +    L+ L+  
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPH--QLGNLSSLR 170
             +  ++L  LDLS N             + N + L L  ++   +      +   SSL+
Sbjct: 116 PFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 171 YLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            L+LS N +   + G    +  L  L  +
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPR--FIGSMGNQ-KYLNLLGSQFGGVIPHQLGNLSSL 169
               L +L YL LS +      +    F+    +    LNL  ++   +       L  L
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 170 RYLDLSRNFLY-VVNFGWLSGLSFLEHLDFS 199
             LDL  N +   +      GL  +  +  S
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 6/92 (6%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLG---NLSSL 169
            +     L  L+LS N  +    P    ++G    L L   Q G  +  +L      +S+
Sbjct: 166 DIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224

Query: 170 RYLDLSRNFLYVVNFGWLSGLSF--LEHLDFS 199
           R L LS + L   +     GL +  L  LD S
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 3/101 (2%)

Query: 101 NPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQ--KYLNLLGSQFGGV 158
                 + +     L    +  L LS +             +       L+L  +    V
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT-SNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 159 IPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
                  L  L Y  L  N +  +    L GL  + +L+  
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +     +L+ L L  N  Q +          N   L+L  +            L +L+ L
Sbjct: 92  TFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150

Query: 173 DLSRNFLYVVNFGWLS--GLSFLEHLDFS 199
            LS N +  +    L     S L+ L+ S
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELS 179

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 9/96 (9%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQ-IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
           S   +  L  L L     + V   P     + N   L+L  +    +    L  L  L  
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

Query: 172 LDLSRNFL--------YVVNFGWLSGLSFLEHLDFS 199
           LDL  N L              +L GLS L  L+  
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 9e-09
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 6/94 (6%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQ--KYLNLLGSQFGGVIPHQLGNLSS 168
             + + LE+L  L LS N  Q +     +    N   K L L  +Q     P     +  
Sbjct: 138 LGTQVQLENLQELLLSNNKIQAL-KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 169 LRYLDLSRNFLYVV---NFGWLSGLSFLEHLDFS 199
           L  L L+   L              + + +L  S
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 120 LSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFL 179
               D S       Q+P  + +  N   LNL  +Q   +        S L  LD+  N +
Sbjct: 6   HEVADCSHLKLT--QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 180 YVVNFGWLSGLSFLEHLDFS 199
             +       L  L+ L+  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQ 81

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGS--QFGGVIPHQLGNL--SS 168
           S   L+ L +L++  ND  G+        + N KYL+L  S      +      +L  S 
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 169 LRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L  L+L++N +  +     S L  LE LD  
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 115 LDLEH-LSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLD 173
           L+L+   +   +S      +        +   ++LN+  +   G+  +    L +L+YL 
Sbjct: 301 LNLKRSFTKQSISLASLPKI-DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359

Query: 174 LSRNFLYVVNFGWLS----GLSFLEHLDFS 199
           LS +F  +      +      S L  L+ +
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 21/87 (24%), Positives = 36/87 (41%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
             L L  L+ L ++ N F+   +     +  N  +L+L   Q   +       L  L+ L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           ++S N L  ++    + L  L  LD S
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCS 529

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
           + S  +   L +LDLS  + + +   +    + +   L L G+      P     L+SL 
Sbjct: 49  SYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 171 YLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            L      L  +    +  L  L+ L+ +
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVA 136

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 1/91 (1%)

Query: 110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSL 169
           ++ + + LE L +LD   +  + V       S+    YL++  +            L+SL
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 170 RYLDLSRN-FLYVVNFGWLSGLSFLEHLDFS 199
             L ++ N F         +  + L  LD S
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +   L HLS L L+ N  Q    P     + + + L  + ++   +    +G L +L+ L
Sbjct: 75  AWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

Query: 173 DLSRNFLYVVNF-GWLSGLSFLEHLDFS 199
           +++ NF++      + S L+ L H+D S
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLS 161

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS 175
           +  +L++LDLS    + +       ++   + LN+  +    +       L SL  LD S
Sbjct: 471 NTTNLTFLDLSKCQLEQI-SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529

Query: 176 RNFLYVVNFGWLSGLSFLEHLDFS 199
            N +             L   + +
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLT 553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR-- 170
            +  L  L  L+++ N     ++P +  ++ N  +++L  +    +  + L  L      
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182

Query: 171 --YLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
              LD+S N +  +      G+  L  L   
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQGIK-LHELTLR 212

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 108 GKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQ-KYLNLLGSQFGGVIPHQLGNL 166
           G ++   + L  LSYLDLS N         +     N  ++L+L  +    ++      L
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGL 398

Query: 167 SSLRYLDLSRNFLYVV-NFGWLSGLSFLEHLDFS 199
             L++LD   + L  V  F     L  L +LD S
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 108 GKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLS 167
           G +NP +  + +++            ++P  I S  + K ++L  +    +  +   N S
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS--KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFS 56

Query: 168 SLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            L++LDLSR  +  +      GL  L +L  +
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 8/90 (8%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
             +        L +     +          +   K L L  +   G I  +   L SL Y
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQFPT----LDLPFLKSLTL--TMNKGSISFKKVALPSLSY 354

Query: 172 LDLSRNFLYVVNFG--WLSGLSFLEHLDFS 199
           LDLSRN L           G + L HLD S
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 5/117 (4%)

Query: 109 KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIG---SMGNQKYLNLLGSQFGGVIPHQLGN 165
           K+     +L +L ++DLS+N  Q + +        +      L++  +    +       
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

Query: 166 LSSLRYLDLSRNFL-YVVNFGWLSGLSFLEHLDFSTTRKMGFTDTKLVSVITFPDTC 221
           +  L  L L  NF    +    L  L+ L              + ++         C
Sbjct: 204 I-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 16/103 (15%), Positives = 39/103 (37%), Gaps = 1/103 (0%)

Query: 97  QFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG 156
           +  +  +     +        E +  + + +N+ +   +   +  M     L  L +Q  
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           G +P   G+   L  L+L+ N +  +   +      +E+L F+
Sbjct: 344 GKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 20/130 (15%)

Query: 53  SNRLASWIGDGDCCLWA---GVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGK 109
           +   A+W  + +  +W    GV  ++  G +  L+L                      G+
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEG----------------FGASGR 96

Query: 110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSL 169
           V  ++  L  L  L L  +  +  +       +                    +      
Sbjct: 97  VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE 156

Query: 170 RYLDLSRNFL 179
            + DL ++ +
Sbjct: 157 DFSDLIKDCI 166

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 9e-10
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 8/87 (9%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLL------GSQFGGVIPHQLGNL 166
               L +L  +DLS+N F     P    +    K   +       G++     P  +   
Sbjct: 508 RATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565

Query: 167 SSLRYLDLSRNFLYVVNFGWLSGLSFL 193
            SL  L +  N +  VN      +S L
Sbjct: 566 PSLTQLQIGSNDIRKVNEKITPNISVL 592

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 13/96 (13%)

Query: 117 LEHLSYLDLSFNDFQGVQ------IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
           +  +S +D S+N+   V       +        N   +NL  +Q            S L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 171 YLDLSRNFL-------YVVNFGWLSGLSFLEHLDFS 199
            ++L  N L                    L  +D  
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 7/114 (6%), Positives = 27/114 (23%), Gaps = 26/114 (22%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQ------------------IPRFIGSMGNQKYLNLLGS 153
            +++ L  L    +  + F                            ++ +   + +   
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 154 QFGGVIPHQLGNLSSLRYLDLSRNFLYVV--------NFGWLSGLSFLEHLDFS 199
                +P  L  L  ++ ++++ N                       ++ +   
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 108 GKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLS 167
             V  SL  ++ L  L+  +N  +G       GS      LNL  +Q   +  +  G   
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEG--KLPAFGSEIKLASLNLAYNQITEIPANFCGFTE 377

Query: 168 SLRYLDLSRNFLYVV-NFGWLSGLSFLEHLDFS 199
            +  L  + N L  + N      +S +  +DFS
Sbjct: 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS 410

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV-------IPHQLGNLSS 168
             E +  L  + N  + +       S+     ++   ++ G V       +        +
Sbjct: 375 FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

Query: 169 LRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           +  ++LS N +        S  S L  ++  
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLM 465

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 11/97 (11%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV-------IPHQLG 164
           P+     ++S ++LS N            +      +NL+G+    +             
Sbjct: 427 PTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485

Query: 165 NLSSLRYLDLSRNFLYVV--NFGWLSGLSFLEHLDFS 199
           N   L  +DL  N L  +  +F   + L +L  +D S
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDFR-ATTLPYLVGIDLS 521

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 11/89 (12%), Positives = 23/89 (25%), Gaps = 2/89 (2%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
              D   L    ++ +  Q   I +          +  L +     +   +  L+ LR  
Sbjct: 154 PREDFSDLIKDCINSDPQQK-SIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQF 211

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFSTT 201
            +  +     N          E+     T
Sbjct: 212 YMGNSPFVAENICEAWENENSEYAQQYKT 240

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 7/100 (7%), Positives = 23/100 (23%), Gaps = 7/100 (7%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN 165
               +  S       + +    N+     + + +  +   +   +  S F      +   
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 166 LSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMG 205
             +  Y    +             L  L  ++      + 
Sbjct: 229 NENSEYAQQYKTED-----LKWDNLKDLTDVEVYNCPNLT 263

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 7e-11
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSR 176
                 L+ SFN    +Q       + N  +L+L   Q   +      +   L  L L+ 
Sbjct: 32  PNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 177 NFLYVVNFGWLSGLSFLEHLDFS 199
           N L  +    LSG   L+HL F 
Sbjct: 91  NPLIFMAETALSGPKALKHLFFI 113

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 9e-11
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 1/89 (1%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
           N +   L +L++LDL+      +       S      L L  +    +    L    +L+
Sbjct: 50  NTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 171 YLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           +L   +  +  ++F  L     LE L   
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLG 137

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 9e-11
 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +  +   L  LDL+F   +         ++   K LNL  S            L +L++L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454

Query: 173 DLSRNFLYVVN---FGWLSGLSFLEHLDFS 199
           +L  N     N      L  L  LE L  S
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 1/87 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +      L  L L+ N    +     +      K+L  + +    +    L N  +L  L
Sbjct: 76  TFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            L  N +  +          L+ LDF 
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQ 161

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +      L  LDL+       ++P  +  +   K L L  ++F  +      N  SL +L
Sbjct: 273 TFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 173 DLSRNFLYV-VNFGWLSGLSFLEHLDFS 199
            +  N   + +  G L  L  L  LD S
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLS 358

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQI-PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
            L +LE+L  LDLS +D +        + ++ + + LNL  ++   +          L  
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 172 LDLSRNFL-YVVNFGWLSGLSFLEHLDFS 199
           LDL+   L           L  L+ L+ S
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG--GVIPHQLGNLSSLR 170
           S  +   L++L +  N  +       + ++ N + L+L             QL NLS L+
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 171 YLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            L+LS N    +          LE LD +
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLA 408

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPH-QLGNLSSL 169
           N  L +L HL  L+LS+N+   +            + L+L  ++           NL  L
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 170 RYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           + L+LS + L + +     GL  L+HL+  
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 2/99 (2%)

Query: 101 NPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIP 160
           N       +   SL  L  L  L LSF D   +       S+    +++L  ++      
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 161 HQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
             L +L  + YL+L+ N + ++    L  LS    ++  
Sbjct: 518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +L   + L +L         +     + +    + L L  +    +   +      L+ L
Sbjct: 100 ALSGPKALKHLFFIQTGISSI-DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLD 197
           D   N ++ ++   +S L    +L 
Sbjct: 159 DFQNNAIHYLSKEDMSSLQQATNLS 183

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGV--QIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
               L  L +L+L  N F     Q    + ++G  + L L       +  H   +L  + 
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 171 YLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           ++DLS N L   +   LS L  + +L+ +
Sbjct: 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLA 531

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF 178
            +  ++L  + F  +            + L+L  +     +P  L  LS+L+ L LS N 
Sbjct: 255 SVESINLQKHYFFNI-SSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANK 312

Query: 179 LYVVNFGWLSGLSFLEHLDFS 199
              +     S    L HL   
Sbjct: 313 FENLCQISASNFPSLTHLSIK 333

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +   L+ ++++DLS N      I           YLNL  +    ++P  L  LS  R +
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHL--KGIYLNLASNHISIILPSLLPILSQQRTI 552

Query: 173 DLSRN 177
           +L +N
Sbjct: 553 NLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 4/91 (4%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN--LSSLR 170
            +  L+  + L L+ N      I          + LN  G+Q   VI   L N  + SL 
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 171 YLDLSRNFLYVVNFGWLSGLSF--LEHLDFS 199
                      ++     GL    +E ++  
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 4/91 (4%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNL-LGSQFGGVIPHQLGNLSSLR 170
           P     E L  LD   N    +     + S+     L+L L       I     + +  +
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205

Query: 171 YLDLSRNFLYVVNFGWLSGLSF--LEHLDFS 199
            L+       +V F  L   +   L    F 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 6e-10
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
               L+ L  L+L++N    +    F G + N + LNL  +  G +       L  + Y+
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           DL +N + ++       L  L+ LD  
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLR 370

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 109 KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL----- 163
            +   LL + HL  L L+ N F      +      + + L L  +        +L     
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 164 GNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
             LS L+ L L+ N+L  +  G  S L+ L  L  +
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 115 LDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDL 174
           L    + +LDLS      +   R   ++ + K LNL  ++   +       L +L+ L+L
Sbjct: 263 LARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 175 SRNFLYVVNFGWLSGLSFLEHLDFS 199
           S N L  +      GL  + ++D  
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQ 346

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 7e-09
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVI-PHQLGNLSSLRYLDL 174
            L     L LSFN  + V    F   +   + L L        I      NL +LR LDL
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 175 SRNFLYVVNFGWLSGLSFLEHLDFS 199
             + +Y ++     GL  L  L   
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLY 105

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           S   LE L  L+L               ++ N + L+L  S+   + P     L  L  L
Sbjct: 43  SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102

Query: 173 DLSRNFLY--VVNFGWLSGLSFLEHLDFS 199
            L    L   V+  G+   L  L  LD S
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVI--PHQLGNLSSLR 170
           +  +L +L  LDL  +    +    F G + +   L L        +       NL +L 
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126

Query: 171 YLDLSRNFLYVVNFGW-LSGLSFLEHLDFS 199
            LDLS+N +  +        L+ L+ +DFS
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 120 LSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL-GNLSSLRYLDLSRNF 178
            + + LS N  + + I  F+  + + + L L  ++F      Q      SL  L L  N 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 179 LYVVNF-----GWLSGLSFLEHLDFS 199
           L +            GLS L+ L  +
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLN 488

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLS--SLR 170
              +L+ L+ LDLS N  + + +    G + + K ++   +Q   V  H+L  L   +L 
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 171 YLDLSRNFLY-VVNFGWLSGLSFLEHLDFST 200
           +  L+ N LY  V+  W   ++   ++    
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
           + +   L++L  L+LS+N    +    F G +    Y++L  +    +       L  L+
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYG-LPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365

Query: 171 YLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            LDL  N L       +  +  +  +  S
Sbjct: 366 TLDLRDNALTT-----IHFIPSIPDIFLS 389

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 117 LEHLSYLDLSFNDFQGVQI----PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
              L  L L  N  Q              + + + L L  +    + P    +L++LR L
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            L+ N L V++   L     LE LD S
Sbjct: 510 SLNSNRLTVLSHNDLPAN--LEILDIS 534

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 7e-10
 Identities = 17/161 (10%), Positives = 40/161 (24%), Gaps = 20/161 (12%)

Query: 44  RFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVT--GHILELNLRNPFNYYVQPDQFEAN 101
           R+     + +    +W  + +  +W      ++   G +  L+L   F            
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAG-FG----------- 334

Query: 102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPH 161
                 G+V  ++  L  L  L    +             +                   
Sbjct: 335 ----AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390

Query: 162 QLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTR 202
            L     L   DL ++ +       +  +     +    T+
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPE--MKPIKKDSRISLKDTQ 429

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 4e-09
 Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 2/88 (2%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
                   +    + +N+ +       +  M     L+ + ++         G    L  
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTD 599

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L L  N +  +   + +    +E L FS
Sbjct: 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFS 627

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 5e-09
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLL------GSQFGGVIPHQLGNLSSL 169
            L +LS +D+S+N F     P    +    K   +       G++     P  +    SL
Sbjct: 751 TLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 170 RYLDLSRNFLYVVNFGWLSGLSFL 193
             L +  N +  V+      L  L
Sbjct: 809 IQLQIGSNDIRKVDEKLTPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 10/115 (8%), Positives = 27/115 (23%), Gaps = 27/115 (23%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGV------------------QIPRFIGSMGNQKYLNLLGS 153
            ++  L  L  +  + + F                            ++ +   + L   
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 154 QFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGW---------LSGLSFLEHLDFS 199
                +P  L +L  L+ L+++ N                        ++     
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 11/98 (11%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQ----IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSS 168
           +   +  +  +D S+N                   N   + L  ++            S 
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 169 LRYLDLSRNFL-------YVVNFGWLSGLSFLEHLDFS 199
           +  + LS N +            G       L  +D  
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 9/97 (9%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNL-------LGSQFGGVIPHQL 163
           +       + S + LS+N+ Q         +      + L       +            
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

Query: 164 GNLSSLRYLDLSRNFL-YVVNFGWLSGLSFLEHLDFS 199
            N   L  +DL  N L  + +    + L +L ++D S
Sbjct: 725 KNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVS 761

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 11/104 (10%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV------- 158
                  S  +L+ L+ ++L        Q+P F+  +   + LN+  ++           
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMT-QLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

Query: 159 --IPHQLGNLSSLRYLDLSRNFL-YVVNFGWLSGLSFLEHLDFS 199
             +         ++   +  N L        L  +  L  LD  
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSL 169
            + SL  +  L  LD   N  +        G+      L L  +Q   +          +
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

Query: 170 RYLDLSRNFLYVV-NFGWLSGLSFLEHLDFS 199
             L  S N L  + N      +  +  +DFS
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 16/113 (14%), Positives = 31/113 (27%), Gaps = 24/113 (21%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGV-----QIPRFIGSMGNQKYLNLLGSQFGGV------- 158
           NP +  ++  S + L       +      I + I  +   + +    S F          
Sbjct: 411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWE 470

Query: 159 ------------IPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
                             NL  L  ++L           +L  L  L+ L+ +
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 8e-10
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 110 VNPSLLD-LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSS 168
               + + L  L  L ++ N FQ   +P     + N  +L+L   Q   + P    +LSS
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 169 LRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L+ L+++ N L  V  G    L+ L+ +   
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
           + S      L  LDLS  + Q ++      S+ +   L L G+    +       LSSL+
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 171 YLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            L      L  +    +  L  L+ L+ +
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVA 132

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 7e-08
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +   L HLS L L+ N  Q +        + + + L  + +    +    +G+L +L+ L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 173 DLSRNFLYVVNFGW-LSGLSFLEHLDFS 199
           +++ N +         S L+ LEHLD S
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 7e-08
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPH-QLGNLSSLRY 171
           S      L YLDLSFN      +      +   ++L+   S    +       +L +L Y
Sbjct: 368 SDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           LD+S     V   G  +GLS LE L  +
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMA 453

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY- 171
            +  L+ L  L+++ N  Q  ++P +  ++ N ++L+L  ++   +    L  L  +   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 172 ---LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
              LDLS N +  +  G    +  L  L   
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIR-LHKLTLR 208

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSL 169
           ++ + L LE L +LD   ++ + +       S+ N  YL++  +            LSSL
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 170 RYLDLSRNFLYVVNF-GWLSGLSFLEHLDFS 199
             L ++ N           + L  L  LD S
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 115 LDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQ--FGGVIPHQLGNLSSLRYL 172
           L L+ L  L  + N  +G      +  + + ++L+L  +   F G         +SL+YL
Sbjct: 322 LKLKSLKRLTFTSN--KGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           DLS N +  ++  +  GL  LEHLDF 
Sbjct: 379 DLSFNGVITMSSNF-LGLEQLEHLDFQ 404

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
           P +  + +++Y      +F   +IP  +    + K L+L  +    +  +   +   L+ 
Sbjct: 2   PCVEVVPNITY-QCMELNFY--KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQV 56

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           LDLSR  +  +  G    LS L  L  +
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILT 84

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
              +L +L++LDLS    + +  P    S+ + + LN+  +Q   V       L+SL+ +
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523

Query: 173 DLSRN 177
            L  N
Sbjct: 524 WLHTN 528

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 9e-09
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQ-LGNLSSLRYLDL 174
            L  L YL+L  N +Q + +     ++ N + L +   +    I       L+SL  L++
Sbjct: 96  PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 175 SRNFLYVVNFGWLSGLSFLEHLDFS 199
               L       L  +  + HL   
Sbjct: 156 KALSLRNYQSQSLKSIRDIHHLTLH 180

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSR 176
              +  LDLSFN    +     + +  N + L L  S+   +      +L SL +LDLS 
Sbjct: 25  TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 177 NFLYVVNFGWLSGLSFLEHLDFS 199
           N L  ++  W   LS L++L+  
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLM 106

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 4/92 (4%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
               ++   +  L +                +   K + +  S+   V      +L SL 
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDL-STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

Query: 171 YLDLSRNFL---YVVNFGWLSGLSFLEHLDFS 199
           +LDLS N +   Y+ N         L+ L  S
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
            L    +L  L L  +    ++      S+G+ ++L+L  +    +     G LSSL+YL
Sbjct: 45  DLRACANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103

Query: 173 DLSRNFLYVV-NFGWLSGLSFLEHLDFS 199
           +L  N    +        L+ L+ L   
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
                D       D + ++   V     + ++  +  L++        +      L  ++
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR-RLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 171 YLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            + +  + +++V   +   L  LE LD S
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLS 342

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 1/107 (0%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
               L  L+ L++     +  Q  + + S+ +  +L L  S+   ++      LSS+RYL
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFTDTKLVSVITFPD 219
           +L    L    F  L        +     R    TD     ++    
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQ---LGNLSSL 169
               LE +  + +  +    V        + + ++L+L  +             G   SL
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQH-LKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 170 RYLDLSRNFLYVV--NFGWLSGLSFLEHLDFS 199
           + L LS+N L  +      L  L  L  LD S
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 11/90 (12%), Positives = 28/90 (31%)

Query: 110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSL 169
           V     +L +L  L +   +            + +   L +            L ++  +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 170 RYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            +L L  +    +   +   LS + +L+  
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELR 204

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 116 DLEHLSYLDLSFNDFQGVQ-IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDL 174
               L  L LS N  + +Q     + ++ N   L++  + F   +P        +R+L+L
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 175 SRNFLYVVNFGWLSGLSFLEHLDFS 199
           S   + VV          LE LD S
Sbjct: 418 SSTGIRVVKTCIPQT---LEVLDVS 439

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSR 176
            + L  LD+S N      +  F   +   + L +  ++   +          L  + +SR
Sbjct: 430 PQTLEVLDVSNN-----NLDSFSLFLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISR 482

Query: 177 NFLYVVNFGWLSGLSFLEHLDFS 199
           N L  V  G    L+ L+ +   
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLH 505

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 1/89 (1%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
               + L +   +    +  + +     + S    + LNL   Q   +  +      +++
Sbjct: 38  GFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 171 YLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            L +  N +  +       +  L  L   
Sbjct: 97  KLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 9/88 (10%), Positives = 28/88 (31%), Gaps = 4/88 (4%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
                   +     + + + G +      ++ NQK +    S    +    L +   +  
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFED----ITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L+L+   +  ++    +    ++ L   
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMG 101

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
             LL+   L  +DLS+N+ + +    F+  M   + L +  ++    +      + +L+ 
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRL-VALNLYGQPIPTLKV 299

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           LDLS N L  V          LE+L   
Sbjct: 300 LDLSHNHLLHVERN-QPQFDRLENLYLD 326

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +      +  L + FN  + +  P    ++     L L  +    +      N   L  L
Sbjct: 88  AFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            +S N L  +        + L++L  S
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLS 173

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
             + ++ L  L +S N      +  +   +   K L+L  +     +         L  L
Sbjct: 267 PFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323

Query: 173 DLSRNFLYVVNFGWLSGLSFL 193
            L  N +  +       L  L
Sbjct: 324 YLDHNSIVTLKLSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +L     +  LD S N    V+ P  +        L L  +         L N   L  +
Sbjct: 200 TLAIPIAVEELDASHNSINVVRGPVNV----ELTILKLQHNNLTDT--AWLLNYPGLVEV 253

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFSTTR 202
           DLS N L  + +     +  LE L  S  R
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNR 283

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
              ++  L+ L L  ND   +       +      L++  +    +        +SL+ L
Sbjct: 112 VFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170

Query: 173 DLSRNFLYVVNFGWLSGLSFL 193
            LS N L  V+   +  L   
Sbjct: 171 QLSSNRLTHVDLSLIPSLFHA 191

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSR 176
              L+ L L  N+         +        ++L  ++   ++ H    +  L  L +S 
Sbjct: 225 NVELTILKLQHNNLT--DTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 177 NFLYVVNFGWLSGLSFLEHLDFS 199
           N L  +N  +   +  L+ LD S
Sbjct: 282 NRLVALN-LYGQPIPTLKVLDLS 303

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 4e-08
 Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 1/89 (1%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
               + L +   +    +  + +     + S    + LNL   Q   +  +      +++
Sbjct: 44  GFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 171 YLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            L +  N +  +       +  L  L   
Sbjct: 103 KLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
             LL+   L  +DLS+N+ + +    F+  M   + L +  ++    +      + +L+ 
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRL-VALNLYGQPIPTLKV 305

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           LDLS N L  V          LE+L   
Sbjct: 306 LDLSHNHLLHVERN-QPQFDRLENLYLD 332

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 9/88 (10%), Positives = 28/88 (31%), Gaps = 4/88 (4%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
                   +     + + + G +      ++ NQK +    S    +    L +   +  
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFED----ITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L+L+   +  ++    +    ++ L   
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMG 107

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +      +  L + FN  + +  P    ++     L L  +    +      N   L  L
Sbjct: 94  AFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            +S N L  +        + L++L  S
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLS 179

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
             + ++ L  L +S N  + V +  +   +   K L+L  +     +         L  L
Sbjct: 273 PFVKMQRLERLYISNN--RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329

Query: 173 DLSRNFLYVVNFGWLSGLSFL 193
            L  N +  +       L  L
Sbjct: 330 YLDHNSIVTLKLSTHHTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +L     +  LD S N    V+ P  +        L L  +         L N   L  +
Sbjct: 206 TLAIPIAVEELDASHNSINVVRGPVNV----ELTILKLQHNNL--TDTAWLLNYPGLVEV 259

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFSTTR 202
           DLS N L  + +     +  LE L  S  R
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNR 289

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
              ++  L+ L L  ND   +       +      L++  +    +        +SL+ L
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

Query: 173 DLSRNFLYVVNFGWLSGLSFL 193
            LS N L  V+   +  L   
Sbjct: 177 QLSSNRLTHVDLSLIPSLFHA 197

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSR 176
              L+ L L  N+         +        ++L  ++   ++ H    +  L  L +S 
Sbjct: 231 NVELTILKLQHNNLT--DTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 177 NFLYVVNFGWLSGLSFLEHLDFS 199
           N L  +N  +   +  L+ LD S
Sbjct: 288 NRLVALN-LYGQPIPTLKVLDLS 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +  +L +L  L L  N  + + +  F G + N   L++  ++   ++ +   +L +L+ L
Sbjct: 75  AFNNLFNLRTLGLRSNRLKLIPLGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKSL 133

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           ++  N L  ++    SGL+ LE L   
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLE 160

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF 178
               LDL  N  + +    F     + + L L  +    V P    NL +LR L L  N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 179 LYVVNFGWLSGLSFLEHLDFS 199
           L ++  G  +GLS L  LD S
Sbjct: 92  LKLIPLGVFTGLSNLTKLDIS 112

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
                 HL  L+L+ N    V+   F   + N + L L  ++   +       LS+L  L
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           D+S N + ++       L  L+ L+  
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVG 136

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS 175
            L +L+ LD+S N    +        + N K L +  +    +       L+SL  L L 
Sbjct: 102 GLSNLTKLDISENKIVILL-DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160

Query: 176 RNFLYVVNFGWLSGLSFLEHLDFS 199
           +  L  +    LS L  L  L   
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLR 184

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 7e-07
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
           P+ L   +L+ L ++  +   V     +  +   ++LNL  +    +    L  L  L+ 
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           + L    L VV      GL++L  L+ S
Sbjct: 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVS 304

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 1/87 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           S   L  L  L++S   +     P  +  + N   L++       V    + +L  LR+L
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFL 253

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           +LS N +  +    L  L  L+ +   
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLV 280

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS 175
           DL +L  L++  ND   +    F G + + + L L       +    L +L  L  L L 
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSG-LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 176 RNFLYVVNFGWLSGLSFLEHLDFS 199
              +  +       L  L+ L+ S
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEIS 208

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           ++  L +L +L+LS+N    ++       +   + + L+G Q   V P+    L+ LR L
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHE-LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           ++S N L  +       +  LE L   
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILD 328

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +   L +L YL+L   + +   +P     +   + L + G+ F  + P     LSSL+ L
Sbjct: 191 AFEGLFNLKYLNLGMCNIK--DMPNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            +  + + ++      GL+ L  L+ +
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLA 274

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRN 177
            +  YL+L  N+ Q +Q   F   + + + L L  +    +       L+SL  L+L  N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 178 FLYVVNFGWLSGLSFLEHLD 197
           +L V+  G    LS L  L 
Sbjct: 134 WLTVIPSGAFEYLSKLRELW 153

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
           P+L  L  L  L++S N F  ++ P     + + K L ++ SQ   +  +    L+SL  
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L+L+ N L  +     + L +L  L   
Sbjct: 271 LNLAHNNLSSLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGS-QFGGVIPHQLGNLSSLRY 171
           +   L  L  L L  N  + +    F   + +   L+L    +   +       L +L+Y
Sbjct: 142 AFEYLSKLRELWLRNNPIESIPSYAFNR-VPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L+L    +  +    L+ L  LE L+ S
Sbjct: 201 LNLGMCNIKDMP--NLTPLVGLEELEMS 226

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSR 176
           L HL  L L  N  + +++  F G + +   L L  +    +       LS LR L L  
Sbjct: 98  LHHLEVLQLGRNSIRQIEVGAFNG-LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 177 NFLYVVNFGWLSGLSFLEHLD 197
           N +  +     + +  L  LD
Sbjct: 157 NPIESIPSYAFNRVPSLMRLD 177

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS 175
            L  L+ L+L  N    +    F   +   + L L  +    +  +    + SL  LDL 
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEY-LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179

Query: 176 R-NFLYVVNFGWLSGLSFLEHLDFS 199
               L  ++ G   GL  L++L+  
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLG 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 115 LDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDL 174
            +        ++ +  +         S  N K L+L G+    +    L   + L  L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 175 SRNFLYVVNFGWLSGLSFLEHLDFS 199
           S N LY      L  LS L  LD +
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLN 88

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
            LL    +  L  + N+   V   R  G     K + L  ++   +     G  S ++YL
Sbjct: 94  ELLVGPSIETLHAANNNISRVSCSRGQGK----KNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 173 DLSRNFLYVVNFGWLSG-LSFLEHLDFS 199
           DL  N +  VNF  L+     LEHL+  
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQ 177

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 22/108 (20%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV-------------- 158
                  + YLDL  N+   V       S    ++LNL  +    V              
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL 198

Query: 159 -------IPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
                  +  +  + + + ++ L  N L ++    L     LEH D  
Sbjct: 199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLR 245

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
              +    L  LDLS N      +     S     +++L  ++   +I   L    +L +
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 172 LDLSRNFLYVVNF-GWLSGLSFLEHLD 197
            DL  N  +      + S    ++ + 
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
                 ++  LDLS N    +     +      + LNL  +     +   L +LS+LR L
Sbjct: 29  LRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           DL+ N++       L     +E L  +
Sbjct: 86  DLNNNYVQE-----LLVGPSIETLHAA 107

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 14/65 (21%), Positives = 26/65 (40%)

Query: 135 IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLE 194
           I     +    K   +  S     +     +  +++ LDLS N L  ++   L+  + LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 195 HLDFS 199
            L+ S
Sbjct: 62  LLNLS 66

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL-GNLSSLRYLDLS 175
            +    + L+ N    ++     G     +YL+L  ++   V   +L  +  +L +L+L 
Sbjct: 119 GQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 176 RNFLYVVNFGWLSGLSFLEHLDFS 199
            NF+Y V        + L+ LD S
Sbjct: 178 YNFIYDVKGQ--VVFAKLKTLDLS 199

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 11/93 (11%), Positives = 26/93 (27%), Gaps = 2/93 (2%)

Query: 110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSL 169
           +  +L   ++L + DL  N F    +  F     NQ+   +       +        +  
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS--KNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 170 RYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTR 202
                       +   +   L  L+  + +   
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLS 319

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSR 176
             ++  L ++            I  + N + L ++G          L  L+SL  LD+S 
Sbjct: 65  AHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 177 NFLYVVNFGWLSGLSFLEHLDFS 199
           +         ++ L  +  +D S
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLS 144

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLD 173
           +  L +L  L +   D    +IP  +  + +   L++  S     I  ++  L  +  +D
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 174 LSRNFLYVVNFGWLSGLSFLEHLDFSTTR 202
           LS N   + +   L  L  L+ L+     
Sbjct: 143 LSYNGA-ITDIMPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +   +  L+Y+ L+  +   +     I    N K L +         P  +  LS+L  L
Sbjct: 39  TEAQMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERL 93

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFSTTR 202
            +    +       LSGL+ L  LD S + 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
           P+L  L  L+ LD+S +      +   I ++     ++L  +     I   L  L  L+ 
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMP-LKTLPELKS 163

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L++  +   V ++  +     L  L   
Sbjct: 164 LNIQFD--GVHDYRGIEDFPKLNQLYAF 189

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRN 177
            +   L+L  N  Q +++  F   + + + L L  +    +       L++L  L+L  N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKH-LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 178 FLYVVNFGWLSGLSFLEHLDFS 199
            L  +  G    LS L+ L   
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLR 144

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +   L +L YL+L+  + +  +IP     +     L+L G+    + P     L  L+ L
Sbjct: 180 AFEGLSNLRYLNLAMCNLR--EIPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            + ++ + V+       L  L  ++ +
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLA 263

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
           P+L  L  L  LDLS N    ++   F G + + + L ++ SQ   +  +   NL SL  
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           ++L+ N L ++     + L  LE +   
Sbjct: 260 INLAHNNLTLLPHDLFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           S   L HL  L LS N  + ++I  F G + N   L L  ++   +       LS L+ L
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLD 197
            L  N +  +     + +  L  LD
Sbjct: 142 WLRNNPIESIPSYAFNRIPSLRRLD 166

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGS-QFGGVIPHQLGNLSSLRYLDL 174
            L  L  L L  N  + +    F   + + + L+L    +   +       LS+LRYL+L
Sbjct: 134 YLSKLKELWLRNNPIESIPSYAFNR-IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 175 SRNFLYVVNFGWLSGLSFLEHLDFS 199
           +   L  +    L+ L  L+ LD S
Sbjct: 193 AMCNLREIPN--LTPLIKLDELDLS 215

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
            ++ DL  L  L++  N    + +   + ++     L L  +Q G      +G L++L  
Sbjct: 259 NAVKDLTKLKMLNVGSNQISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L LS+N +  +    L+ LS ++  DF+
Sbjct: 316 LFLSQNHITDIRP--LASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 4e-07
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
            +  +LE ++ L ++      +Q    I  + N +YLNL G+Q   + P  L NL  L  
Sbjct: 38  VTQEELESITKLVVAGEKVASIQ---GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN 92

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L +  N +   +   L  L+ L  L  +
Sbjct: 93  LYIGTNKI--TDISALQNLTNLRELYLN 118

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
             L +L  L++L++  N    +     +  +   K LN+  +Q   +    L NLS L  
Sbjct: 237 SPLANLSQLTWLEIGTN---QISDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNS 291

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L L+ N L   +   + GL+ L  L  S
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
            +L +L +L  L L+ ++   +     + ++     LNL  +     +   L N++ L Y
Sbjct: 104 SALQNLTNLRELYLNEDNISDIS---PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNY 159

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFSTTR 202
           L ++ + +  V    ++ L+ L  L  +  +
Sbjct: 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
             L ++  L+YL ++ +  + V     I ++ +   L+L  +Q   + P  L +L+SL Y
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFSTTR 202
                N +   +   ++ ++ L  L     +
Sbjct: 204 FTAYVNQI--TDITPVANMTRLNSLKIGNNK 232

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
             + +L  L  L L++N  + +     + S+ +  Y     +Q   + P  + N++ L  
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDIS---PLASLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L +  N +  ++   L+ LS L  L+  
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIG 251

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
             L +L  L+ L L+ N          IG + N   L L  +    + P  L +LS +  
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337

Query: 172 LDLSRNFL 179
            D +   +
Sbjct: 338 ADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
              DL       L       V        + +   L + G +   +    +  L++L YL
Sbjct: 17  PDADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKVASIQG--IEYLTNLEYL 71

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           +L+ N +  ++   LS L  L +L   
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIG 96

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 24/86 (27%), Positives = 41/86 (47%)

Query: 114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLD 173
              L  L  L ++ N FQ   +P     + N  +L+L   Q   + P    +LSSL+ L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 174 LSRNFLYVVNFGWLSGLSFLEHLDFS 199
           +S N  + ++      L+ L+ LD+S
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYS 231

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
              +L +L++LDLS    + +    F   + + + LN+  + F  +       L+SL+ L
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 173 DLSRNFLYVVNFGWLSGL-SFLEHLDFS 199
           D S N +       L    S L  L+ +
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL-GNLSSL 169
           + S      L YLDLSFN      +      +   ++L+   S    +    +  +L +L
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128

Query: 170 RYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            YLD+S     V   G  +GLS LE L  +
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 22/92 (23%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGS-MGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
               L  L+ L LS N                + KYL+L  +     +      L  L +
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105

Query: 172 LDLSRNFL-YVVNFGWLSGLSFLEHLDFSTTR 202
           LD   + L  +  F     L  L +LD S T 
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSL 169
           ++ + L LE L +LD   ++ + +       S+ N  YL++  +            LSSL
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152

Query: 170 RYLDLSRN-FLYVVNFGWLSGLSFLEHLDFS 199
             L ++ N F         + L  L  LD S
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQ--FGGVIPHQLGNLSSLRYLDLSR 176
             + L+L  N  Q +        +     L+L  +   F G         +SL+YLDLS 
Sbjct: 29  SATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 177 NFLYVVNFGWLSGLSFLEHLDFSTTR 202
           N +  ++     GL  LEHLDF  + 
Sbjct: 88  NGVITMSSN-FLGLEQLEHLDFQHSN 112

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 5e-07
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 9/103 (8%)

Query: 106 LVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQ-----KYLNLLGSQFGGVIP 160
           + G   P LL+        L+  +        ++  +        K L++  +       
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 161 HQLGNLSSLRYLDLSRNFL----YVVNFGWLSGLSFLEHLDFS 199
            Q+    +L  LDLS N       +++         L+ L   
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 26/128 (20%), Positives = 34/128 (26%), Gaps = 18/128 (14%)

Query: 72  ICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQ 131
           +C      +  L LRN                    G  +        L  LDLS N  +
Sbjct: 195 LCPLKFPTLQVLALRN-------------AGMETPSGVCSALAAARVQLQGLDLSHNSLR 241

Query: 132 GVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLS 191
                           LNL  +    V     G  + L  LDLS N L          L 
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRLDRNPSPD--ELP 296

Query: 192 FLEHLDFS 199
            + +L   
Sbjct: 297 QVGNLSLK 304

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQ-KYLNLLGSQFGGVIPH----QLGNLS 167
            +L +  L  L L   +  G   P  + + G     LNL    +          Q     
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 168 SLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            L+ L +++      +   +     L  LD S
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 12/100 (12%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
                L HL ++ +        ++P  +      + L L  +     +P  + +L+ LR 
Sbjct: 98  DQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154

Query: 172 LDLSRN---------FLYVVNFGWLSGLSFLEHLDFSTTR 202
           L +                   G   GL  L+ L    T 
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 115 LDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDL 174
                   L+L        Q P     + + +++ +  +     +P  +   + L  L L
Sbjct: 78  ATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134

Query: 175 SRNFL 179
           +RN L
Sbjct: 135 ARNPL 139

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 97  QFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG 156
           +    P  +     +     L +L  L L +   +   +P  I ++ N K L +  S   
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLS 219

Query: 157 GVIPHQLGNLSSLRYLDLSRN 177
             +   + +L  L  LDL   
Sbjct: 220 A-LGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 112 PSLLDLEHLSYLDLSFN--------DFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL 163
            S+  L  L  L +                        + N + L L  +     +P  +
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI 202

Query: 164 GNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            NL +L+ L +  + L  +    +  L  LE LD  
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLR 237

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
            S+ +L++L  L +  +      +   I  +   + L+L G       P   G  + L+ 
Sbjct: 200 ASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 172 LDLSRN 177
           L L   
Sbjct: 258 LILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 112 PSLLDLEHLSYLDLS-FNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
           P++  L  L  LDL      +    P   G     K L L        +P  +  L+ L 
Sbjct: 223 PAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280

Query: 171 YLDLSRN 177
            LDL   
Sbjct: 281 KLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 112 PSLLDLEHLSYLDLS-FNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
           P       L  L L   ++     +P  I  +   + L+L G      +P  +  L +  
Sbjct: 247 PIFGGRAPLKRLILKDCSNLL--TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

Query: 171 YLDLSRNFL 179
            + +  +  
Sbjct: 305 IILVPPHLQ 313

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 115 LDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDL 174
            +        ++ +  +   +     S  N K L+L G+    +    L   + L  L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 175 SRNFLYVVNFGWLSGLSFLEHLDFS 199
           S N LY      L  LS L  LD +
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLN 88

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
            LL    +  L  + N+   V   R  G     K + L  ++   +     G  S ++YL
Sbjct: 94  ELLVGPSIETLHAANNNISRVSCSRGQGK----KNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 173 DLSRNFLYVVNFGWLSG-LSFLEHLDFS 199
           DL  N +  VNF  L+     LEHL+  
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQ 177

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 22/108 (20%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV-------------- 158
                  + YLDL  N+   V       S    ++LNL  +    V              
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL 198

Query: 159 -------IPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
                  +  +  + + + ++ L  N L ++    L     LEH D  
Sbjct: 199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLR 245

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
              +    L  LDLS N      +     S     +++L  ++   +I   L    +L +
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 172 LDLSRNFLYVVNF-GWLSGLSFLEHLDFSTTRKM 204
            DL  N  +      + S    ++ +   T +K+
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
                 ++  LDLS N    +     +      + LNL  +     +   L +LS+LR L
Sbjct: 29  LRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           DL+ N++       L     +E L  +
Sbjct: 86  DLNNNYV-----QELLVGPSIETLHAA 107

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 14/65 (21%), Positives = 26/65 (40%)

Query: 135 IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLE 194
           I     +    K   +  S     +     +  +++ LDLS N L  ++   L+  + LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 195 HLDFS 199
            L+ S
Sbjct: 62  LLNLS 66

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV-IPHQLGNLSSLRYLDLS 175
            +    + L+ N    ++     G     +YL+L  ++   V       +  +L +L+L 
Sbjct: 119 GQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 176 RNFLYVVNFGWLSGLSFLEHLDFS 199
            NF+Y V        + L+ LD S
Sbjct: 178 YNFIYDVKGQ--VVFAKLKTLDLS 199

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
            S  DL+ ++ L        G++    +  + N   +N   +Q   + P  L NL+ L  
Sbjct: 40  VSQTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           + ++ N +  +    L+ L+ L  L   
Sbjct: 95  ILMNNNQIADITP--LANLTNLTGLTLF 120

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
             L +L +L+ L L  N    +     + ++ N   L L  +    +    L  L+SL+ 
Sbjct: 106 TPLANLTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQ 160

Query: 172 LDLSRNFLYVVNFGWLSGLSFLE 194
           L        +     L+ L  L+
Sbjct: 161 LSFGNQVTDLKPLANLTTLERLD 183

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
             L  L  L+ L L  N    +     +  +     L L  +Q   + P  + NL +L Y
Sbjct: 259 APLSGLTKLTELKLGANQISNIS---PLAGLTALTNLELNENQLEDISP--ISNLKNLTY 313

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L L  N +  ++   +S L+ L+ L F 
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFY 339

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
             L +L  L  LD+S N    +     +  + N + L    +Q   + P  LG L++L  
Sbjct: 171 KPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITP--LGILTNLDE 225

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L L+ N L  +    L+ L+ L  LD +
Sbjct: 226 LSLNGNQLKDIGT--LASLTNLTDLDLA 251

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
             +  L  L  L    N          + ++ N  +L+   +Q   + P  L NL+ +  
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHL 196
           L L+          + + +S    +
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTV 404

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
             L  L +L  L  + N    +     +G + N   L+L G+Q   +    L +L++L  
Sbjct: 193 SVLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKDIGT--LASLTNLTD 247

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFSTTR 202
           LDL+ N +   N   LSGL+ L  L     +
Sbjct: 248 LDLANNQI--SNLAPLSGLTKLTELKLGANQ 276

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           +  DL +L++L L  N    V    F G + +   L L  ++   V PH   +L  L  L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
            L  N L  +    L+ L  L++L  +
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS 175
            L  L YL L  N  Q +    F   +GN  +L L G++   V       L SL  L L 
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 176 RNFLYVVNFGWLSGLSFLEHLDFS 199
           +N +  V+      L  L  L   
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLF 209

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLG-SQFGGVIPHQLGNLSSLRY 171
           S     +L+ L L  N    +    F G +   + L+L   +Q   V P     L  L  
Sbjct: 51  SFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLD 197
           L L R  L  +  G   GL+ L++L 
Sbjct: 110 LHLDRCGLQELGPGLFRGLAALQYLY 135

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 116 DLEHLSYLDLSFNDFQGVQIPR--FIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLD 173
            L  L  LDLS N  Q   +    F G +G    L+L       + P     L++L+YL 
Sbjct: 78  GLALLEQLDLSDNA-QLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 174 LSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L  N L  +       L  L HL   
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLH 161

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 120 LSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF- 178
              + L  N    V    F     N   L L  +    +       L+ L  LDLS N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 179 LYVVNFGWLSGLSFLEHLD 197
           L  V+     GL  L  L 
Sbjct: 93  LRSVDPATFHGLGRLHTLH 111

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 146 KYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           + + L G++   V         +L  L L  N L  ++    +GL+ LE LD S
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 110 VNPSLLDLEHLSYLDLSFN-DFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSS 168
               L   E+L+ L +      Q ++  R +  +G  + L ++ S    V P        
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 169 LRYLDLSRNFLYVVNFGWLSGLSFLEHLDFST 200
           L  L+LS N L  +++  + GLS L+ L  S 
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 54/278 (19%), Positives = 83/278 (29%), Gaps = 95/278 (34%)

Query: 24  LCNGNS----YHVGCLESEREVLLRFKQDLQDPSNRLASWI------GDGDCCL------ 67
           L N N     Y+V    S  +  L+ +Q L     R A  +      G G   +      
Sbjct: 119 LYNDNQVFAKYNV----SRLQPYLKLRQALL--ELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 68  -------------WAGVICDNVTGHILE----LNLRNPFNYYVQPDQFEANP-------- 102
                        W  +   N    +LE    L  +   N+  + D              
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 103 --RSMLVGKVNP-SLLDL------EHLSYLDL-----------SFNDFQGVQIPRFIGSM 142
             R +L  K     LL L      +  +  +L              DF        I   
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 143 GNQ-------------KYLNL----LGSQFGGVIPHQLGNLS-SLR-YLDLSRNFLYVVN 183
            +              KYL+     L  +     P +L  ++ S+R  L    N+ +V N
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-N 351

Query: 184 FGWLSGL--SFLEHLDFSTTRKMGFTDTKLVSVITFPD 219
              L+ +  S L  L+ +  RKM F     +SV  FP 
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKM-FDR---LSV--FPP 383

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS 175
            + +L YLDLS N    +    F   +   + L L  +    V  +   +++ L+ L LS
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEFLFSD-LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 176 RNFLYVVN---FGWLSGLSFLEHLDFS 199
           +N +           + L  L  LD S
Sbjct: 145 QNQISRFPVELIKDGNKLPKLMLLDLS 171

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 22/81 (27%), Positives = 35/81 (43%)

Query: 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF 178
           + + LDLS N+   ++       + N   L L  +    +       + +LRYLDLS N 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 179 LYVVNFGWLSGLSFLEHLDFS 199
           L+ ++    S L  LE L   
Sbjct: 100 LHTLDEFLFSDLQALEVLLLY 120

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSR 176
           L +L  L LS N    +    F+  + N +YL+L  +    +      +L +L  L L  
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVP-VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 177 NFLYVVNFGWLSGLSFLEHLDFS 199
           N + VV+      ++ L+ L  S
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLS 144

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLS 175
            ++ LSY+ ++  +     IP+  G   +   L+L G++   V    L  L++L  L LS
Sbjct: 169 GMKKLSYIRIADTNIT--TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224

Query: 176 RNFLYVVNFGWLSGLSFLEHLDFS 199
            N +  V+ G L+    L  L  +
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLN 248

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           SL  L +L+ L LSFN    V          + + L+L  ++    +P  L +   ++ +
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268

Query: 173 DLSRNFLYVVN------FGWLSGLSFLEHLD 197
            L  N +  +        G+ +  +    + 
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQ-LGNLSSLRYLDL 174
            L  L++L+L  N ++ +        +   + L +        I  +    L+ L  L++
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 175 SRNFLYVVNFGWLSGLSFLEHLDFS 199
             + L       L  +  + HL   
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILH 206

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 120 LSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFL 179
           +  LDLS N    +          N + L L  +    +      +L SL +LDLS N+L
Sbjct: 54  VKSLDLSNNRITYISNSDLQR-CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 180 YVVNFGWLSGLSFLEHLDFS 199
             ++  W   LS L  L+  
Sbjct: 113 SNLSSSWFKPLSSLTFLNLL 132

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 23/190 (12%)

Query: 11  LFQLLVIAAISMSLCNGNSYHVGCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAG 70
           L +L       +         +  L  E+E L  F         R A         L   
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 433

Query: 71  VICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDF 130
            +       +  L+L +                ++L       L  L  +++LDLS N  
Sbjct: 434 SVLKMEYADVRVLHLAH-------------KDLTVL-----CHLEQLLLVTHLDLSHNRL 475

Query: 131 QGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV-NFGWLSG 189
           +   +P  + ++   + L    +     +   + NL  L+ L L  N L        L  
Sbjct: 476 R--ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 190 LSFLEHLDFS 199
              L  L+  
Sbjct: 532 CPRLVLLNLQ 541

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 8/86 (9%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
           P L +L  L+ +    N      + +      + + +    +        +L NL  L  
Sbjct: 189 PELQNLPFLTAIYADNN-----SLKKLPDLPLSLESIVAGNNIL--EELPELQNLPFLTT 241

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLD 197
           +    N L  +       L  L   D
Sbjct: 242 IYADNNLLKTLP-DLPPSLEALNVRD 266

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 6e-05
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
            SL DL+ L  L L  N    +     +  +   + L L  ++   +    L  L+ L  
Sbjct: 103 SSLKDLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDITV--LSRLTKLDT 157

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L L  N +  +    L+GL+ L++L  S
Sbjct: 158 LSLEDNQISDIVP--LAGLTKLQNLYLS 183

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
            +  +L  +  +  + +D + VQ    I  + N   L L G++   + P  L NL +L +
Sbjct: 37  VTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L L  N   + +   L  L  L+ L   
Sbjct: 92  LFLDEN--KIKDLSSLKDLKKLKSLSLE 117

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 1/87 (1%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           S   L+ LS   +  + F   Q   +     N    N   S    V       +S   +L
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEI-FSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329

Query: 173 DLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           D S N L    F     L+ LE L   
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQ 356

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 122 YLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV 181
            L++S N    +       S+   + L +  ++   +          L YLDLS N L  
Sbjct: 25  ILNISQNYISELWTSDI-LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK 83

Query: 182 VNFGWLSGLSFL 193
           ++      L  L
Sbjct: 84  ISCHPTVNLKHL 95

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 115 LDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDL 174
               +++  + + +  + V +      +    +L+   +     +    G+L+ L  L L
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCP-SKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355

Query: 175 SRNFLYVVN--FGWLSGLSFLEHLDFS 199
             N L  ++      + +  L+ LD S
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDIS 382

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 21/102 (20%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV------------------ 158
           ++ L  LD+S N     +         +   LN+  +                       
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK 432

Query: 159 ---IPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLD 197
              IP Q+  L +L+ L+++ N L  V  G    L+ L+ + 
Sbjct: 433 IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
            +  DL+ ++ L         ++    +  + N   L L  +Q   + P  L NL+ +  
Sbjct: 35  VTQADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLAP--LKNLTKITE 89

Query: 172 LDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           L+LS N L  V+   ++GL  ++ LD +
Sbjct: 90  LELSGNPLKNVSA--IAGLQSIKTLDLT 115

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL-GNLSSLRYLDLSRN 177
           H++Y+DLS N    +        + + ++L +     G VI +     LSSL  L L  N
Sbjct: 31  HVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 178 FLYVVNFGWLSGLSFLEHLDFS 199
               +  G  +GL+ LE L  +
Sbjct: 90  QFLQLETGAFNGLANLEVLTLT 111

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSR 176
              L  L L+ N+   +    F G + +   LNL  +  G +      NL  L  LDLS 
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWG-LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356

Query: 177 NFLYVVNFGWLSGLSFLEHLDFST 200
           N +  +      GL  L+ L   T
Sbjct: 357 NHIRALGDQSFLGLPNLKELALDT 380

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYL 172
           S   L+ L +L +       V        + +   L L  +QF  +       L++L  L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 173 DLSRNFL--YVVNFGWLSGLSFLEHLDFSTTR 202
            L++  L   V++  +   L+ LE L      
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 18/92 (19%), Positives = 24/92 (26%), Gaps = 3/92 (3%)

Query: 113 SLLDLEHLSYLDLSFNDFQGVQIPR--FIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR 170
             +       LD+  N      I R  F+G       L L  +    +            
Sbjct: 123 HKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE 181

Query: 171 YLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTR 202
                 N L  +      G S    LD S TR
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSL 169
             P   D   L+YL +S        IP+          L+L  ++   +    L   S L
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLT--GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 170 RYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
             L L  N + ++  G LS L  L  L   
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 108 GKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLS 167
           GK+     +  +L +L L       V     +  +   K L L  ++  G +      L 
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSENRIFGGLDMLAEKLP 95

Query: 168 SLRYLDLSRNFLYVVN-FGWLSGLSFLEHLDFS 199
           +L +L+LS N L  ++    L  L  L+ LD  
Sbjct: 96  NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 21/105 (20%)

Query: 114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQF-GGV-------------- 158
             ++  L  LD+S N        R      +   LNL  +   G V              
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH 458

Query: 159 ------IPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLD 197
                 IP  + +L +L+ L+++ N L  V  G    L+ L+++ 
Sbjct: 459 NNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.7 bits (90), Expect = 9e-04
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSR 176
              L  L +S N      +P     +     L++  +Q    +P  L +LSS   ++L  
Sbjct: 240 PSELKELMVSGNRLT--SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 177 NFLYVVNFGWLSGLSFLEHLD 197
           N L       L  ++      
Sbjct: 294 NPLSERTLQALREITSAPGYS 314

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.7
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.69
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.65
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.63
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.62
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.59
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.57
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.57
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.56
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.55
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.55
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.54
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.54
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.54
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.54
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.53
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.53
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.52
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.52
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.52
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.52
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.51
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.51
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.51
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.49
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.49
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.48
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.47
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.46
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.46
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.45
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.45
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.44
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.43
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.43
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.42
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.41
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.4
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.4
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.4
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.39
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.38
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.38
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.38
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.32
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.31
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.31
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.3
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.29
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.26
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.25
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.24
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.21
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.2
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.2
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.1
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.94
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.94
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.89
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.73
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.69
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.21
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.09
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.03
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.93
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.31
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.28
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.13
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.77
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.8
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.48
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.91
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.53

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=2.1e-28  Score=203.70  Aligned_cols=176  Identities=25%  Similarity=0.453  Sum_probs=106.6

Q ss_pred             CCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCccc--ccceEEcCCC--CcEEEEEcCCCCCC----CC-----CCcccc
Q 027602           33 GCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCL--WAGVICDNVT--GHILELNLRNPFNY----YV-----QPDQFE   99 (221)
Q Consensus        33 ~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~----l~-----~~~~~~   99 (221)
                      .|.++|++||++||+++.+|. .+.+|..+.+||.  |.||+|+...  ++|+.+++++..-.    +.     ...+..
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~   80 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence            588999999999999998775 6889988889998  9999998644  79999999985200    00     000000


Q ss_pred             CC-C-CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCC
Q 027602          100 AN-P-RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRN  177 (221)
Q Consensus       100 ~~-~-~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N  177 (221)
                      +. + .|++.+.+|..+.++++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus        81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A           81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence            11 1 144555555555555555555555555554 45555555555555555555555555555555555555555555


Q ss_pred             CCCCcCCC-cCCCCC-CCCEEEcccCCCCCCCCccc
Q 027602          178 FLYVVNFG-WLSGLS-FLEHLDFSTTRKMGFTDTKL  211 (221)
Q Consensus       178 ~l~~~~~p-~~~~l~-~L~~L~l~~N~l~g~ip~~~  211 (221)
                      +++ +.+| .+..++ +|++|++++|+++|.+|..+
T Consensus       160 ~l~-~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~  194 (313)
T 1ogq_A          160 RIS-GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             CCE-EECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             ccc-CcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence            554 3344 444444 55555555555555555444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=3.7e-25  Score=204.19  Aligned_cols=169  Identities=24%  Similarity=0.252  Sum_probs=134.3

Q ss_pred             CCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCcccccceEEcCCCCcEEEEEcCCCC--C----------CCCCCcccc
Q 027602           32 VGCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNLRNPF--N----------YYVQPDQFE   99 (221)
Q Consensus        32 ~~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~--~----------~l~~~~~~~   99 (221)
                      ....++|++||++||+.+.||. .+++|..+.+||.|.||+|+  .++|++++|++..  +          .+..+++..
T Consensus         7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~   83 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF   83 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred             ccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence            3446889999999999999887 89999977899999999998  5899999999863  1          111111111


Q ss_pred             CCCCCCCccc--cCccccCCCCCcEEeCccCCCCCCcccc--cccCCCCCcEEEccCCcCCCCCcccc-CCCCCCCEEeC
Q 027602          100 ANPRSMLVGK--VNPSLLDLEHLSYLDLSFNDFQGVQIPR--FIGSMGNQKYLNLLGSQFGGVIPHQL-GNLSSLRYLDL  174 (221)
Q Consensus       100 ~~~~n~l~g~--~p~~l~~l~~L~~L~L~~n~l~g~~ip~--~~~~l~~L~~L~l~~N~l~g~~p~~l-~~l~~L~~L~l  174 (221)
                          +.+.+.  +|+.+..+++|++|++++|.++| .+|.  .++.+++|++|++++|.+++.+|..+ .++++|++|++
T Consensus        84 ----~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  158 (768)
T 3rgz_A           84 ----LSNSHINGSVSGFKCSASLTSLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL  158 (768)
T ss_dssp             ----CTTSCEEECCCCCCCCTTCCEEECCSSEEEE-EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred             ----CcCCCcCCCchhhccCCCCCEEECCCCcCCC-cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence                233333  34778888999999999999988 7887  88889999999999999888888766 78889999999


Q ss_pred             cCCCCCCcCCC-c---CCCCCCCCEEEcccCCCCCCCCc
Q 027602          175 SRNFLYVVNFG-W---LSGLSFLEHLDFSTTRKMGFTDT  209 (221)
Q Consensus       175 ~~N~l~~~~~p-~---~~~l~~L~~L~l~~N~l~g~ip~  209 (221)
                      ++|.++ +..+ .   +.++++|++|++++|.++|.+|.
T Consensus       159 s~n~l~-~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  196 (768)
T 3rgz_A          159 SANSIS-GANVVGWVLSDGCGELKHLAISGNKISGDVDV  196 (768)
T ss_dssp             CSSCCE-EETHHHHHHTTCCTTCCEEECCSSEEESCCBC
T ss_pred             CCCccC-CcCChhhhhhccCCCCCEEECCCCcccccCCc
Confidence            999986 5555 3   67888999999999999888774

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=7.1e-25  Score=198.50  Aligned_cols=56  Identities=18%  Similarity=0.244  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHHHHhhCCCCCCC--------CCCCCCCCCcccc---cceEEcCCCCcEEEEEcCCC
Q 027602           32 VGCLESEREVLLRFKQDLQDPSNR--------LASWIGDGDCCLW---AGVICDNVTGHILELNLRNP   88 (221)
Q Consensus        32 ~~~~~~~~~~L~~~~~~l~~~~~~--------l~~W~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~   88 (221)
                      .+....|+.||.++|+++.++.+.        ..+|+.+.++|.|   .||+|+. .+||++|+|++.
T Consensus        25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~   91 (636)
T 4eco_A           25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGF   91 (636)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTS
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCc
Confidence            334457999999999999765433        2379988999999   9999987 489999999985

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=1.9e-24  Score=201.20  Aligned_cols=77  Identities=21%  Similarity=0.296  Sum_probs=56.5

Q ss_pred             CCCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCC-----Cc--ccc------------cceEEcCCCCcEEEEEcCCCCCC
Q 027602           31 HVGCLESEREVLLRFKQDLQDPSNRLASWIGDG-----DC--CLW------------AGVICDNVTGHILELNLRNPFNY   91 (221)
Q Consensus        31 ~~~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~-----~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~   91 (221)
                      ..+...+|+.||++||+++.+|     +|+.+.     ++  |.|            .||+|+. .+||++|+|++.   
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~---  333 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF---  333 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT---
T ss_pred             ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC---
Confidence            4445678999999999999776     565433     55  999            9999987 689999999995   


Q ss_pred             CCCCccccCCCCCCCccccCccccCCCCCcEEeC-ccCC
Q 027602           92 YVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDL-SFND  129 (221)
Q Consensus        92 l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L-~~n~  129 (221)
                                   ++.|.+|+++++|++|+.|+| ++|.
T Consensus       334 -------------~L~G~ip~~l~~L~~L~~LdLss~N~  359 (876)
T 4ecn_A          334 -------------GAKGRVPDAIGQLTELKVLSFGTHSE  359 (876)
T ss_dssp             -------------CCEEEECGGGGGCTTCCEEESCCTTH
T ss_pred             -------------CCCCcCchHHhccccceEeeeccccc
Confidence                         555555555555555555555 4443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=3.4e-22  Score=167.25  Aligned_cols=179  Identities=15%  Similarity=0.183  Sum_probs=134.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhCC-CCCCCCCCC----CCCCCcccccceEEcC--------CCCcEEEEEcCCCC-CCCC-
Q 027602           29 SYHVGCLESEREVLLRFKQDLQ-DPSNRLASW----IGDGDCCLWAGVICDN--------VTGHILELNLRNPF-NYYV-   93 (221)
Q Consensus        29 ~~~~~~~~~~~~~L~~~~~~l~-~~~~~l~~W----~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~-~~l~-   93 (221)
                      +.......+|++||++||..+. ++.+....|    ....++|.|.|+.|..        ...+|+.++++++. ..++ 
T Consensus        19 ~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~   98 (328)
T 4fcg_A           19 FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD   98 (328)
T ss_dssp             CC--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCS
T ss_pred             eeccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcCh
Confidence            3445566788999999999884 776677889    4557899999999952        23689999998864 1110 


Q ss_pred             ----CCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCC---
Q 027602           94 ----QPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN---  165 (221)
Q Consensus        94 ----~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~---  165 (221)
                          ...+..+. +.|.+. .+|..+.++++|++|++++|.++  .+|..+..+++|++|++++|.+.+.+|..+..   
T Consensus        99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~  175 (328)
T 4fcg_A           99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDA  175 (328)
T ss_dssp             CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred             hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence                11111111 346777 78888888899999999999888  67888888899999999988888888877654   


Q ss_pred             ------CCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602          166 ------LSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS  213 (221)
Q Consensus       166 ------l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~  213 (221)
                            +++|++|++++|.++  .+| .+..+++|++|++++|++++ +|..+..
T Consensus       176 ~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~  227 (328)
T 4fcg_A          176 SGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH  227 (328)
T ss_dssp             CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG
T ss_pred             hhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc
Confidence                  888999999999885  556 77888999999999999986 5554543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=3.7e-18  Score=135.73  Aligned_cols=133  Identities=17%  Similarity=0.126  Sum_probs=75.0

Q ss_pred             CCCCCCCCcccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCcc
Q 027602           57 ASWIGDGDCCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSF  127 (221)
Q Consensus        57 ~~W~~~~~~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~  127 (221)
                      ..|......|.|++|.|....         ..++.+++++                |.+.+..|..+.++++|++|++++
T Consensus        10 ~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~----------------n~i~~~~~~~~~~l~~L~~L~L~~   73 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHD----------------NQITKLEPGVFDSLINLKELYLGS   73 (229)
T ss_dssp             -CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCS----------------SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             hccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCC----------------CccCccCHHHhhCccCCcEEECCC
Confidence            445555789999999997521         3466777776                455555555555555555555555


Q ss_pred             CCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCC
Q 027602          128 NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       128 n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~  206 (221)
                      |.++. ..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++  .+| .+..+++|++|++++|++++.
T Consensus        74 N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~  150 (229)
T 3e6j_A           74 NQLGA-LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSI  150 (229)
T ss_dssp             SCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred             CCCCC-cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCcc
Confidence            55552 22233455555555555555555433334455555555555555553  333 444555555555555555544


Q ss_pred             CC
Q 027602          207 TD  208 (221)
Q Consensus       207 ip  208 (221)
                      .+
T Consensus       151 ~~  152 (229)
T 3e6j_A          151 PH  152 (229)
T ss_dssp             CT
T ss_pred             CH
Confidence            33

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=2.4e-17  Score=127.53  Aligned_cols=127  Identities=20%  Similarity=0.173  Sum_probs=107.0

Q ss_pred             cccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCc-cccCCCCCcEEeCccCCCCCCc
Q 027602           65 CCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNP-SLLDLEHLSYLDLSFNDFQGVQ  134 (221)
Q Consensus        65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~-~l~~l~~L~~L~L~~n~l~g~~  134 (221)
                      .|.|..+.|....         ..++.+++++                |.+.+..+. .+..+++|++|++++|.+++ .
T Consensus         7 ~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~----------------n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~   69 (192)
T 1w8a_A            7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLND----------------NELGRISSDGLFGRLPHLVKLELKRNQLTG-I   69 (192)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCS----------------CCCCSBCCSCSGGGCTTCCEEECCSSCCCC-B
T ss_pred             EECCCEEEcCCCCcCcCccCCCCCCCEEECCC----------------CcCCccCCccccccCCCCCEEECCCCCCCC-c
Confidence            4788888886421         2455556555                678766664 48899999999999999998 7


Q ss_pred             ccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCc
Q 027602          135 IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDT  209 (221)
Q Consensus       135 ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~  209 (221)
                      .|..+..+++|++|++++|++++..|..+.++++|++|++++|+++ +.+| .+..+++|++|++++|.+++..+.
T Consensus        70 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           70 EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-eeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            7889999999999999999999888888999999999999999997 5555 788899999999999999998763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.73  E-value=6.4e-17  Score=126.30  Aligned_cols=143  Identities=19%  Similarity=0.125  Sum_probs=82.4

Q ss_pred             CcccccceEEcCCC---------CcEEEEEcCCCC-CC-----C-CCCccccCC-CCCCCccccCccccCCCCCcEEeCc
Q 027602           64 DCCLWAGVICDNVT---------GHILELNLRNPF-NY-----Y-VQPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLS  126 (221)
Q Consensus        64 ~~c~w~gv~c~~~~---------~~v~~l~l~~~~-~~-----l-~~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~  126 (221)
                      -.|.|.++.|....         .+++.++++++. ..     + ....+..+. ..|.+.+..+..+.++++|++|+++
T Consensus         5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            35789999997521         357788888753 00     0 001111111 3355554444445666666666666


Q ss_pred             cCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCC
Q 027602          127 FNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       127 ~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g  205 (221)
                      +|.+++ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++ +..+ .+..+++|++|++++|.+.+
T Consensus        85 ~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           85 TNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             SSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCcCCc-cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec
Confidence            666664 33334566666666666666666544444566666666666666664 2223 35556666677777766666


Q ss_pred             CCC
Q 027602          206 FTD  208 (221)
Q Consensus       206 ~ip  208 (221)
                      ..|
T Consensus       163 ~~~  165 (208)
T 2o6s_A          163 TCP  165 (208)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=4.5e-17  Score=130.89  Aligned_cols=110  Identities=20%  Similarity=0.151  Sum_probs=77.9

Q ss_pred             CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602          102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                      +.|.+.+..+..+.++++|++|++++|.+++ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ 
T Consensus        67 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-  144 (251)
T 3m19_A           67 DYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-  144 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             CCCcCCccCHhHhccCCcCCEEECCCCcccc-cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-
Confidence            3466666666667777777777777777775 44455677778888888888777554555677788888888888875 


Q ss_pred             cCCC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602          182 VNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS  213 (221)
Q Consensus       182 ~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~  213 (221)
                      ...+ .+..+++|++|++++|++++..|..+..
T Consensus       145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  177 (251)
T 3m19_A          145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR  177 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC
Confidence            3333 5677888888888888888766655543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=7.9e-17  Score=127.27  Aligned_cols=129  Identities=19%  Similarity=0.167  Sum_probs=72.9

Q ss_pred             cccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcc
Q 027602           65 CCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQI  135 (221)
Q Consensus        65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~i  135 (221)
                      .|.|..+.|....         ..++.|++++                |.+.+..+..+..+++|++|++++|.+++ ..
T Consensus        10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~----------------n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-~~   72 (220)
T 2v9t_B           10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQ----------------NTIKVIPPGAFSPYKKLRRIDLSNNQISE-LA   72 (220)
T ss_dssp             EEETTEEECTTSCCSSCCSSCCTTCCEEECCS----------------SCCCEECTTSSTTCTTCCEEECCSSCCCE-EC
T ss_pred             EECCCEEEcCCCCcCcCCCccCcCCCEEECCC----------------CcCCCcCHhHhhCCCCCCEEECCCCcCCC-cC
Confidence            4688889997421         3567777776                35554444455555666666666666654 34


Q ss_pred             cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccc
Q 027602          136 PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKL  211 (221)
Q Consensus       136 p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~  211 (221)
                      |..|..+++|++|++++|.++...+..+.++++|++|++++|+++ ...+ .+..+++|++|++++|++++..+..+
T Consensus        73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  148 (220)
T 2v9t_B           73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF  148 (220)
T ss_dssp             TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence            555555666666666666655332233455556666666666654 2222 45555566666666666655544333

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=6.8e-17  Score=123.10  Aligned_cols=126  Identities=18%  Similarity=0.163  Sum_probs=103.5

Q ss_pred             cccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcc
Q 027602           65 CCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQI  135 (221)
Q Consensus        65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~i  135 (221)
                      .|.|.++.|....         ..++.+++++                |.+.+..+..+..+++|++|++++|.+++ ..
T Consensus         6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~----------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~   68 (177)
T 2o6r_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELES----------------NKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LP   68 (177)
T ss_dssp             EEETTEEECCSSCCSSCCTTCCTTCSEEECCS----------------SCCCCCCTTTTTTCTTCSEEECCSSCCCC-CC
T ss_pred             EeCCCEEEecCCCCccCCCCCCCCCcEEEeCC----------------CcccEeCHHHhcCcccccEEECCCCcceE-eC
Confidence            4789999997521         2455566665                68887666678999999999999999996 44


Q ss_pred             cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602          136 PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       136 p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      +..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ +..+ .+..+++|++|++++|.+++..|
T Consensus        69 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            455789999999999999999766666889999999999999996 4344 46779999999999999999876

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=9.4e-17  Score=126.85  Aligned_cols=102  Identities=16%  Similarity=0.079  Sum_probs=50.0

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..+..|.++++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|.++ +.
T Consensus        67 N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~  144 (220)
T 2v70_A           67 NKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TV  144 (220)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC-CB
T ss_pred             CcCCEECHHHhCCCCCCCEEECCCCccCc-cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC-EE
Confidence            44444444445555555555555555553 33333445555555555555555444444555555555555555554 22


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCC
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFT  207 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~i  207 (221)
                      .| .+..+++|++|++++|.+++..
T Consensus       145 ~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          145 APGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CHHHhcCCCCCCEEEecCcCCcCCC
Confidence            22 4444555555555555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.70  E-value=1.4e-16  Score=129.42  Aligned_cols=96  Identities=21%  Similarity=0.202  Sum_probs=53.7

Q ss_pred             ccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCC
Q 027602          114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSF  192 (221)
Q Consensus       114 l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~  192 (221)
                      +.++++|++|++++|.+++ ..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ ...+ .+..+++
T Consensus        81 ~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~  158 (270)
T 2o6q_A           81 FKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTS  158 (270)
T ss_dssp             TSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred             hcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcc
Confidence            4455555555555555553 22333455566666666666665544445566666666666666664 2222 3556666


Q ss_pred             CCEEEcccCCCCCCCCccc
Q 027602          193 LEHLDFSTTRKMGFTDTKL  211 (221)
Q Consensus       193 L~~L~l~~N~l~g~ip~~~  211 (221)
                      |++|++++|++++..+..+
T Consensus       159 L~~L~L~~n~l~~~~~~~~  177 (270)
T 2o6q_A          159 LKELRLYNNQLKRVPEGAF  177 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTT
T ss_pred             cceeEecCCcCcEeChhHh
Confidence            6666666666666544333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.69  E-value=2.3e-17  Score=152.21  Aligned_cols=106  Identities=32%  Similarity=0.460  Sum_probs=101.1

Q ss_pred             CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602          103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV  182 (221)
Q Consensus       103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~  182 (221)
                      .|.+.|.+|..+.++++|+.||+++|+++| .+|..++.+++|+.|++++|+++|.+|..++++++|++||+++|+++ +
T Consensus       617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~-g  694 (768)
T 3rgz_A          617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD-G  694 (768)
T ss_dssp             SCEEEEECCCSCSSSBCCCEEECCSSCCBS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-E
T ss_pred             cceecccCchhhhccccccEEECcCCcccc-cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc-C
Confidence            367889999999999999999999999999 99999999999999999999999999999999999999999999998 7


Q ss_pred             CCC-cCCCCCCCCEEEcccCCCCCCCCcc
Q 027602          183 NFG-WLSGLSFLEHLDFSTTRKMGFTDTK  210 (221)
Q Consensus       183 ~~p-~~~~l~~L~~L~l~~N~l~g~ip~~  210 (221)
                      .+| .+..+++|++|++++|+++|.||..
T Consensus       695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          695 RIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             cCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            888 7889999999999999999999965

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.66  E-value=8.1e-16  Score=137.53  Aligned_cols=137  Identities=20%  Similarity=0.238  Sum_probs=75.4

Q ss_pred             CcEEEEEcCCCC------CCC-CCCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEE
Q 027602           78 GHILELNLRNPF------NYY-VQPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLN  149 (221)
Q Consensus        78 ~~v~~l~l~~~~------~~l-~~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~  149 (221)
                      ..++.|+|+++.      ..+ ....+..++ +.|.+.+..|..|.++++|++|+|++|++++ ..+..|..+++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEEE
Confidence            367889988853      000 011111111 3355555555556666666666666666663 2223456666666666


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccccc
Q 027602          150 LLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVI  215 (221)
Q Consensus       150 l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~  215 (221)
                      +++|++++..+..++++++|++|++++|.++...+| .+..+++|++|++++|++++..|..+..+.
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  197 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence            666666644444566666666666666666533444 445566666666666666666555554443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.4e-15  Score=117.88  Aligned_cols=124  Identities=27%  Similarity=0.273  Sum_probs=101.6

Q ss_pred             cccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcc
Q 027602           65 CCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQI  135 (221)
Q Consensus        65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~i  135 (221)
                      .|.|..+.|....         ..++.|++++                |.+. .+|..+.++++|++|++++|.+++ ..
T Consensus         9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~----------------n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~-i~   70 (193)
T 2wfh_A            9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDG----------------NQFT-LVPKELSNYKHLTLIDLSNNRIST-LS   70 (193)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCCEEECCS----------------SCCC-SCCGGGGGCTTCCEEECCSSCCCC-CC
T ss_pred             EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCC----------------CcCc-hhHHHhhcccCCCEEECCCCcCCE-eC
Confidence            4567777886421         2455555555                5776 778899999999999999999997 56


Q ss_pred             cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCC
Q 027602          136 PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFT  207 (221)
Q Consensus       136 p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~i  207 (221)
                      +..|..+++|++|++++|++++..|..+.++++|++|++++|.++ ...+ .+..+++|++|++++|.+...-
T Consensus        71 ~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             HhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeecCC
Confidence            677999999999999999999877788999999999999999997 3333 5788999999999999997653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.65  E-value=5.5e-16  Score=129.51  Aligned_cols=110  Identities=16%  Similarity=0.170  Sum_probs=99.3

Q ss_pred             CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602          103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV  182 (221)
Q Consensus       103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~  182 (221)
                      .|.+. .+|..+.++++|++|++++|.++  .+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|++. +
T Consensus       192 ~n~l~-~lp~~l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~  267 (328)
T 4fcg_A          192 WTGIR-SLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL-L  267 (328)
T ss_dssp             EECCC-CCCGGGGGCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC-C
T ss_pred             CCCcC-cchHhhcCCCCCCEEEccCCCCC--cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch-h
Confidence            36676 88888999999999999999999  57888999999999999999999999999999999999999999987 6


Q ss_pred             CCC-cCCCCCCCCEEEcccCCCCCCCCcccccccc
Q 027602          183 NFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVIT  216 (221)
Q Consensus       183 ~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~  216 (221)
                      .+| .+..+++|++|++++|++.|.+|..+..+.+
T Consensus       268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence            777 7888999999999999999999988866544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.64  E-value=9.1e-16  Score=135.76  Aligned_cols=125  Identities=22%  Similarity=0.259  Sum_probs=61.1

Q ss_pred             cccccceEEcCCC-----------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCC
Q 027602           65 CCLWAGVICDNVT-----------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGV  133 (221)
Q Consensus        65 ~c~w~gv~c~~~~-----------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~  133 (221)
                      .|.|.|+ |+...           .+++.++++++                .+.+..|..+.++++|++|++++|.+++ 
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n----------------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-   64 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFN----------------KITYIGHGDLRACANLQVLILKSSRINT-   64 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSS----------------CCCEECSSTTSSCTTCCEEECTTSCCCE-
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCC----------------ccCccChhhhhcCCcccEEECCCCCcCc-
Confidence            5999998 87422           35777888774                4444444444444444444444444443 


Q ss_pred             cccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCC
Q 027602          134 QIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFT  207 (221)
Q Consensus       134 ~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~i  207 (221)
                      ..|..+..+++|++|++++|++++..|..++++++|++|++++|.+++..+| .+.++++|++|++++|.+.+.+
T Consensus        65 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~  139 (549)
T 2z81_A           65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI  139 (549)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc
Confidence            3333444444444444444444443333344444444444444444321222 3344444444444444433333

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=8.7e-17  Score=147.60  Aligned_cols=171  Identities=15%  Similarity=0.192  Sum_probs=103.7

Q ss_pred             CCHHHHHHHHHHHhhCCCC-CCCCCCCCCC-CCcccccceEEcCCCCcEEEEEcCCCC------CCCCC-----------
Q 027602           34 CLESEREVLLRFKQDLQDP-SNRLASWIGD-GDCCLWAGVICDNVTGHILELNLRNPF------NYYVQ-----------   94 (221)
Q Consensus        34 ~~~~~~~~L~~~~~~l~~~-~~~l~~W~~~-~~~c~w~gv~c~~~~~~v~~l~l~~~~------~~l~~-----------   94 (221)
                      ..+.+++++.+++.+.... ......|... ...+.|.++.+..  +++++++|.+..      ..+..           
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~  206 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQYSIDED  206 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCcccccCc
Confidence            4456678899998876422 2233456443 5567888887765  567777664432      00000           


Q ss_pred             -----------------CccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602           95 -----------------PDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG  156 (221)
Q Consensus        95 -----------------~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~  156 (221)
                                       ..+..+. +.|.+. .+|..+..+++|++|+|++|.++  .+|..+..+++|++|+|++|.++
T Consensus       207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             cccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC
Confidence                             0011111 335555 77878888999999999999998  78988999999999999999998


Q ss_pred             CCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCcccc
Q 027602          157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLV  212 (221)
Q Consensus       157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~  212 (221)
                       .+|..++++++|++|+|++|.++  .+| .+..+++|++|+|++|.|+|.+|..+.
T Consensus       284 -~lp~~~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          284 -SLPAELGSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             -SCCSSGGGGTTCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             -ccChhhcCCCCCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence             78999999999999999999985  566 788899999999999999998886653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.63  E-value=2.3e-15  Score=118.83  Aligned_cols=133  Identities=18%  Similarity=0.131  Sum_probs=110.4

Q ss_pred             cccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccC-ccccCCCCCcEEeCccCCCCCCc
Q 027602           65 CCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVN-PSLLDLEHLSYLDLSFNDFQGVQ  134 (221)
Q Consensus        65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p-~~l~~l~~L~~L~L~~n~l~g~~  134 (221)
                      .|.|..+.|.+..         ..++.|++++                |.+.+..+ ..+..+++|++|++++|.+++ .
T Consensus        10 ~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~----------------N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i   72 (220)
T 2v70_A           10 RCEGTTVDCSNQKLNKIPEHIPQYTAELRLNN----------------NEFTVLEATGIFKKLPQLRKINFSNNKITD-I   72 (220)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCS----------------SCCCEECCCCCGGGCTTCCEEECCSSCCCE-E
T ss_pred             EECCCEeEeCCCCcccCccCCCCCCCEEEcCC----------------CcCCccCchhhhccCCCCCEEECCCCcCCE-E
Confidence            4788889986421         2345666665                68888765 457899999999999999996 5


Q ss_pred             ccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602          135 IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS  213 (221)
Q Consensus       135 ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~  213 (221)
                      .+..+..+++|++|++++|.+++..|..+.++++|++|++++|+++ +..| .+..+++|++|++++|++++..|..+..
T Consensus        73 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  151 (220)
T 2v70_A           73 EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT  151 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred             CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC-eECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence            5568999999999999999999877778999999999999999997 4445 7888999999999999999998877765


Q ss_pred             cc
Q 027602          214 VI  215 (221)
Q Consensus       214 ~~  215 (221)
                      +.
T Consensus       152 l~  153 (220)
T 2v70_A          152 LH  153 (220)
T ss_dssp             CT
T ss_pred             CC
Confidence            44

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.62  E-value=6.5e-15  Score=118.20  Aligned_cols=101  Identities=19%  Similarity=0.103  Sum_probs=52.4

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ ..
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~  170 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SV  170 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-cc
Confidence            44444444445555555555555555553 22233455555555555555555433334555555555555555554 22


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCC
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~  206 (221)
                      .+ .+..+++|++|++++|++++.
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            22 444555555555555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.61  E-value=2.5e-15  Score=129.97  Aligned_cols=148  Identities=18%  Similarity=0.197  Sum_probs=89.2

Q ss_pred             Ccccccc--eEEcCCC--------CcEEEEEcCCCC-C-----CC-CCCccccCC-CCCCCccccC-ccccCCCCCcEEe
Q 027602           64 DCCLWAG--VICDNVT--------GHILELNLRNPF-N-----YY-VQPDQFEAN-PRSMLVGKVN-PSLLDLEHLSYLD  124 (221)
Q Consensus        64 ~~c~w~g--v~c~~~~--------~~v~~l~l~~~~-~-----~l-~~~~~~~~~-~~n~l~g~~p-~~l~~l~~L~~L~  124 (221)
                      ..|.|.+  +.|....        .+++.++++++. .     .+ ....+..+. +.|.+.+.++ ..+.++++|++|+
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~   85 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK   85 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence            4566665  7786432        468889988753 0     00 001111111 2345554553 4566677777777


Q ss_pred             CccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccc--cCCCCCCCEEeCcCCCCCCcCCC-c-CCCCCCCCEEEccc
Q 027602          125 LSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQ--LGNLSSLRYLDLSRNFLYVVNFG-W-LSGLSFLEHLDFST  200 (221)
Q Consensus       125 L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~--l~~l~~L~~L~l~~N~l~~~~~p-~-~~~l~~L~~L~l~~  200 (221)
                      +++|.+++ ..|..+..+++|++|++++|.+++.+|..  +..+++|++|++++|.++ +..| . +..+++|++|++++
T Consensus        86 Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~  163 (455)
T 3v47_A           86 LDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTF  163 (455)
T ss_dssp             CTTCTTCE-ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC-SCCCCGGGGGCTTCCEEECTT
T ss_pred             CCCCccCc-cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC-ccCcccccCCCCcccEEeCCC
Confidence            77777765 55666777777777777777776655544  666777777777777775 3334 2 56677777777777


Q ss_pred             CCCCCCCCccccc
Q 027602          201 TRKMGFTDTKLVS  213 (221)
Q Consensus       201 N~l~g~ip~~~~~  213 (221)
                      |++++..|..+..
T Consensus       164 n~l~~~~~~~l~~  176 (455)
T 3v47_A          164 NKVKSICEEDLLN  176 (455)
T ss_dssp             CCBSCCCTTTSGG
T ss_pred             CcccccChhhhhc
Confidence            7777766655533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.61  E-value=5.9e-15  Score=132.12  Aligned_cols=139  Identities=19%  Similarity=0.205  Sum_probs=100.4

Q ss_pred             CcEEEEEcCCCC-C-----CC-CCCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEE
Q 027602           78 GHILELNLRNPF-N-----YY-VQPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLN  149 (221)
Q Consensus        78 ~~v~~l~l~~~~-~-----~l-~~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~  149 (221)
                      .+++.++++++. .     .+ ....+..+. +.|.+.+..|..|.++++|++|++++|.+++ ..|..++.+++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC-CCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc-cChhhcCCcccCCEEE
Confidence            468889998864 0     11 111111111 3467777777778888888888888888886 5677788888888888


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccccccC
Q 027602          150 LLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVITF  217 (221)
Q Consensus       150 l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~  217 (221)
                      +++|.+++..|..++++++|++|++++|.+++..+| .+.++++|++|++++|++++..|..+..+.+.
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence            888888766667788888888888888888644556 67788888888888888888777766655544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.61  E-value=1.1e-15  Score=126.73  Aligned_cols=106  Identities=19%  Similarity=0.285  Sum_probs=60.2

Q ss_pred             CCCCccccCccccCCC-CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602          103 RSMLVGKVNPSLLDLE-HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       103 ~n~l~g~~p~~l~~l~-~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                      .|.+.|.+|..+..++ +|++|++++|.+++ .+|..+..++ |++|++++|.+++..|..+..+++|++|++++|.++ 
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-  234 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-  234 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEE-ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC-
T ss_pred             CCcccCcCCHHHhhhhhcCcEEECcCCeeec-cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee-
Confidence            3566666666666665 66666666666665 5555555554 555555555555555555555555555555555554 


Q ss_pred             cCCCcCCCCCCCCEEEcccCCCCCCCCccc
Q 027602          182 VNFGWLSGLSFLEHLDFSTTRKMGFTDTKL  211 (221)
Q Consensus       182 ~~~p~~~~l~~L~~L~l~~N~l~g~ip~~~  211 (221)
                      +.+|.+..+++|++|++++|+++|.+|..+
T Consensus       235 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  264 (313)
T 1ogq_A          235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             CBGGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             eecCcccccCCCCEEECcCCcccCcCChHH
Confidence            344444445555555555555555555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.60  E-value=9.2e-15  Score=110.88  Aligned_cols=100  Identities=18%  Similarity=0.088  Sum_probs=84.6

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+. .+|..+.  ++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+.++++|++|++++|+++ +.
T Consensus        19 n~l~-~ip~~~~--~~l~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~   93 (170)
T 3g39_A           19 KSLA-SVPTGIP--TTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SI   93 (170)
T ss_dssp             SCCS-SCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             CCcC-ccCccCC--CCCcEEEcCCCcCCc-cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC-Ee
Confidence            3555 3666553  889999999999997 66788999999999999999999666666789999999999999997 44


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      .+ .+..+++|++|++++|.+++..+
T Consensus        94 ~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           94 PRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            44 58889999999999999998764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=9.9e-16  Score=113.29  Aligned_cols=112  Identities=23%  Similarity=0.226  Sum_probs=98.5

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCc-cccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLV-GKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG  156 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~-g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~  156 (221)
                      .+++.+++++                |.+. +.+|..+..+++|++|++++|.+++  + ..+..+++|++|++++|.++
T Consensus        17 ~~l~~L~l~~----------------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~   77 (149)
T 2je0_A           17 SDVKELVLDN----------------SRSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVS   77 (149)
T ss_dssp             GGCSEEECTT----------------CBCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCC
T ss_pred             ccCeEEEccC----------------CcCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCccc
Confidence            4678888888                5888 8899989999999999999999996  4 77899999999999999999


Q ss_pred             CCCccccCCCCCCCEEeCcCCCCCCcCC-CcCCCCCCCCEEEcccCCCCCCCC
Q 027602          157 GVIPHQLGNLSSLRYLDLSRNFLYVVNF-GWLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~-p~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      +.+|..+..+++|++|++++|.+++... ..+..+++|++|++++|.+++..+
T Consensus        78 ~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             SCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             chHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            8788888889999999999999973222 478889999999999999998766

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.59  E-value=8e-15  Score=123.20  Aligned_cols=151  Identities=21%  Similarity=0.268  Sum_probs=86.2

Q ss_pred             CCCCCCCcccccceEEcCCC-----------CcEEEEEcCCCC-C-----CCC-CCccccCC-CCCCCccccCccccCCC
Q 027602           58 SWIGDGDCCLWAGVICDNVT-----------GHILELNLRNPF-N-----YYV-QPDQFEAN-PRSMLVGKVNPSLLDLE  118 (221)
Q Consensus        58 ~W~~~~~~c~w~gv~c~~~~-----------~~v~~l~l~~~~-~-----~l~-~~~~~~~~-~~n~l~g~~p~~l~~l~  118 (221)
                      .|......|.|.|+ |+...           .+++.++++++. .     .+. ...+..+. +.|.+.+..|..+.+++
T Consensus        22 ~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (353)
T 2z80_A           22 SSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG  100 (353)
T ss_dssp             -----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence            34444678899887 65321           357788887753 0     010 01111111 33566665566666677


Q ss_pred             CCcEEeCccCCCCCCccccc-ccCCCCCcEEEccCCcCCCCCcc--ccCCCCCCCEEeCcCCC-CCCcCCC-cCCCCCCC
Q 027602          119 HLSYLDLSFNDFQGVQIPRF-IGSMGNQKYLNLLGSQFGGVIPH--QLGNLSSLRYLDLSRNF-LYVVNFG-WLSGLSFL  193 (221)
Q Consensus       119 ~L~~L~L~~n~l~g~~ip~~-~~~l~~L~~L~l~~N~l~g~~p~--~l~~l~~L~~L~l~~N~-l~~~~~p-~~~~l~~L  193 (221)
                      +|++|++++|.+++  +|.. +..+++|++|++++|++++ +|.  .+..+++|++|++++|. +. ...+ .+..+++|
T Consensus       101 ~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L  176 (353)
T 2z80_A          101 SLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFL  176 (353)
T ss_dssp             TCCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEE
T ss_pred             CCCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCC
Confidence            77777777777763  3433 6667777777777777663 443  56667777777777663 43 2223 56666777


Q ss_pred             CEEEcccCCCCCCCCccccc
Q 027602          194 EHLDFSTTRKMGFTDTKLVS  213 (221)
Q Consensus       194 ~~L~l~~N~l~g~ip~~~~~  213 (221)
                      ++|++++|++++..|..+..
T Consensus       177 ~~L~l~~n~l~~~~~~~l~~  196 (353)
T 2z80_A          177 EELEIDASDLQSYEPKSLKS  196 (353)
T ss_dssp             EEEEEEETTCCEECTTTTTT
T ss_pred             CEEECCCCCcCccCHHHHhc
Confidence            77777777777666655543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.59  E-value=1.7e-14  Score=117.11  Aligned_cols=103  Identities=25%  Similarity=0.214  Sum_probs=51.4

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..+..+.++++|++|++++|.+++ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ +.
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~  172 (272)
T 3rfs_A           95 NQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SL  172 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             CccCccChhHhcCCcCCCEEECCCCcCCc-cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-cc
Confidence            44444444444555555555555555553 33333455555555555555555433333455555555555555554 22


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      .+ .+..+++|++|++++|++++..|
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCH
Confidence            22 23445555555555555555444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=1.3e-14  Score=112.14  Aligned_cols=107  Identities=18%  Similarity=0.179  Sum_probs=90.8

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccc-cccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPR-FIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV  182 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~-~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~  182 (221)
                      |++ +.+|..+..  ++++|++++|.+++ ..+. .+..+++|++|++++|++++..|..+.++++|++|++++|+++ +
T Consensus        18 ~~l-~~ip~~~~~--~l~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~   92 (192)
T 1w8a_A           18 RGL-KEIPRDIPL--HTTELLLNDNELGR-ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-E   92 (192)
T ss_dssp             SCC-SSCCSCCCT--TCSEEECCSCCCCS-BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-E
T ss_pred             CCc-CcCccCCCC--CCCEEECCCCcCCc-cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC-c
Confidence            466 567776653  89999999999995 3333 3889999999999999999888999999999999999999997 4


Q ss_pred             CCC-cCCCCCCCCEEEcccCCCCCCCCccccccc
Q 027602          183 NFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVI  215 (221)
Q Consensus       183 ~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~  215 (221)
                      ..+ .+..+++|++|++++|++++.+|..+..+.
T Consensus        93 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  126 (192)
T 1w8a_A           93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN  126 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred             cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC
Confidence            445 688899999999999999999997775443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=3.2e-15  Score=112.75  Aligned_cols=112  Identities=23%  Similarity=0.233  Sum_probs=93.5

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCc-cccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLV-GKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG  156 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~-g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~  156 (221)
                      .+++.+++++                |.+. +.+|..+..+++|++|++++|.+++  + ..+..+++|++|++++|.++
T Consensus        24 ~~L~~L~l~~----------------n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~   84 (168)
T 2ell_A           24 AAVRELVLDN----------------CKSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIF   84 (168)
T ss_dssp             TSCSEEECCS----------------CBCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCC
T ss_pred             ccCCEEECCC----------------CCCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCc
Confidence            4688888888                5777 7888888899999999999999985  4 67888999999999999998


Q ss_pred             CCCccccCCCCCCCEEeCcCCCCCCcCC-CcCCCCCCCCEEEcccCCCCCCCC
Q 027602          157 GVIPHQLGNLSSLRYLDLSRNFLYVVNF-GWLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~-p~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      +.+|..+..+++|++|++++|.+++... +.+..+++|++|++++|.+++..+
T Consensus        85 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           85 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            7778777779999999999999863222 477788999999999999987655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.57  E-value=1.8e-14  Score=113.61  Aligned_cols=110  Identities=16%  Similarity=0.173  Sum_probs=96.1

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccc-cccCCCCCcEEEccCCcCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPR-FIGSMGNQKYLNLLGSQFG  156 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~-~~~~l~~L~~L~l~~N~l~  156 (221)
                      .+++.|++++                |.+.+..|..|.++++|++|++++|.++.  +|. .+..+++|++|++++|+++
T Consensus        56 ~~L~~L~Ls~----------------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           56 KKLRRIDLSN----------------NQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             TTCCEEECCS----------------SCCCEECTTTTTTCSSCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCEEECCC----------------CcCCCcCHHHhhCCcCCCEEECCCCcCCc--cCHhHccCCCCCCEEECCCCCCC
Confidence            3566777776                68998889999999999999999999995  554 4688999999999999999


Q ss_pred             CCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCC
Q 027602          157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~  206 (221)
                      +..|..+..+++|++|++++|.++ ...+ .+..+++|++|++++|.+...
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            888889999999999999999997 4444 688899999999999999764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.57  E-value=2.8e-14  Score=111.21  Aligned_cols=107  Identities=21%  Similarity=0.154  Sum_probs=86.1

Q ss_pred             CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602          102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                      +.|.+.+..+..+.++++|++|++++|.+++ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. 
T Consensus        84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-  161 (208)
T 2o6s_A           84 STNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-  161 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-
T ss_pred             CCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-
Confidence            3467776666667889999999999999986 44555788999999999999998655556788999999999999875 


Q ss_pred             cCCCcCCCCCCCCEEEcccCCCCCCCCcccccccc
Q 027602          182 VNFGWLSGLSFLEHLDFSTTRKMGFTDTKLVSVIT  216 (221)
Q Consensus       182 ~~~p~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~  216 (221)
                            ..+++|++|+++.|+++|.+|..++.+..
T Consensus       162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 ------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence                  34568889999999999999988766554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.57  E-value=3.3e-14  Score=115.43  Aligned_cols=138  Identities=20%  Similarity=0.259  Sum_probs=95.3

Q ss_pred             cEEEEEcCCCC-C-----CCC-CCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEc
Q 027602           79 HILELNLRNPF-N-----YYV-QPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNL  150 (221)
Q Consensus        79 ~v~~l~l~~~~-~-----~l~-~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l  150 (221)
                      .++.++++++. .     .+. ...+..+. +.|.+.+..+..+.++++|++|++++|.+++ ..+..+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc-cChhhhcCCccccEEEC
Confidence            57888887753 0     110 11111111 3466766666677888888888888888885 45566778888888888


Q ss_pred             cCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccccccC
Q 027602          151 LGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVITF  217 (221)
Q Consensus       151 ~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~  217 (221)
                      ++|.+++..+..+..+++|++|++++|.++...+| .+..+++|++|++++|++++..+..+..+.++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence            88888766555678888888888888888643455 67778888888888888888766666554443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.56  E-value=2e-14  Score=121.45  Aligned_cols=140  Identities=19%  Similarity=0.198  Sum_probs=93.7

Q ss_pred             cccccceEEcCCC---------CcEEEEEcCCCC------CCC--CCCccccCC-CCCCCccccCccccCCCCCcEEeCc
Q 027602           65 CCLWAGVICDNVT---------GHILELNLRNPF------NYY--VQPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLS  126 (221)
Q Consensus        65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~------~~l--~~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~  126 (221)
                      .|.+..+.|....         ..++.|+|+++.      ..+  ....+..+. +.|.+.+..+..|.++++|++|+|+
T Consensus        17 ~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           17 LCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             EEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            3667778886421         246678887754      111  111222221 4467776666778888888888888


Q ss_pred             cCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC--cC---CCCCCCCEEEcccC
Q 027602          127 FNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG--WL---SGLSFLEHLDFSTT  201 (221)
Q Consensus       127 ~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~---~~l~~L~~L~l~~N  201 (221)
                      +|.+++ ..+..|..+++|++|+|++|++++..|..+.++++|++|++++|.++  .+|  .+   ..+++|++|++++|
T Consensus        97 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A           97 SNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS--RFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             SSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--SCCGGGTC----CTTCCEEECCSS
T ss_pred             CCcCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC--eeCHHHhcCcccCCcCCEEECCCC
Confidence            888875 44445777888888888888887766777888888888888888885  344  23   45788888888888


Q ss_pred             CCCCCC
Q 027602          202 RKMGFT  207 (221)
Q Consensus       202 ~l~g~i  207 (221)
                      +|++-.
T Consensus       174 ~l~~l~  179 (361)
T 2xot_A          174 KLKKLP  179 (361)
T ss_dssp             CCCCCC
T ss_pred             CCCccC
Confidence            888643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.56  E-value=7.6e-14  Score=113.11  Aligned_cols=103  Identities=21%  Similarity=0.193  Sum_probs=54.7

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..+..+.++++|++|++++|.+++ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ ..
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~  172 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RV  172 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-Ee
Confidence            34443333444555666666666666654 33344555666666666666655433333555566666666666654 22


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      .+ .+..+++|++|++++|++++..+
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPE  198 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCH
Confidence            22 34555666666666666655333

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.55  E-value=5.4e-14  Score=107.08  Aligned_cols=100  Identities=18%  Similarity=0.114  Sum_probs=84.5

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+ +.+|..+.  ++|++|++++|++++ ..|..+..+++|++|+|++|++++..+..+.++++|++|++++|+++ ..
T Consensus        22 n~l-~~iP~~~~--~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l   96 (174)
T 2r9u_A           22 IRL-ASVPAGIP--TDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SI   96 (174)
T ss_dssp             SCC-SSCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             CCC-CccCCCcC--CCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-ee
Confidence            355 56777664  899999999999997 66888999999999999999999654555689999999999999997 44


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      .+ .+..+++|++|++++|.+....+
T Consensus        97 ~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           97 PRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CHHHhccccCCCEEEeCCCCcccccc
Confidence            44 48889999999999999987643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.55  E-value=4.4e-14  Score=114.69  Aligned_cols=129  Identities=18%  Similarity=0.102  Sum_probs=101.5

Q ss_pred             CcEEEEEcCCCC-CCCC------CCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEE
Q 027602           78 GHILELNLRNPF-NYYV------QPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLN  149 (221)
Q Consensus        78 ~~v~~l~l~~~~-~~l~------~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~  149 (221)
                      .+++.++++++. ..+.      ...+..+. ..|.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|++|+
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~  163 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELD  163 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEE
Confidence            467888888764 1111      11111111 4578887777778999999999999999996 5556678999999999


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602          150 LLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       150 l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      +++|++++..+..+..+++|++|++++|+++ +.++ .+..+++|++|++++|.+.|..|
T Consensus       164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCCCcCccCHHHhcCCccCCEEECCCCcCC-ccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            9999999777777899999999999999997 4455 57889999999999999887765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.55  E-value=2.4e-14  Score=128.13  Aligned_cols=144  Identities=15%  Similarity=0.083  Sum_probs=109.2

Q ss_pred             Cccccc----ceEEcCCCCcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccc
Q 027602           64 DCCLWA----GVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFI  139 (221)
Q Consensus        64 ~~c~w~----gv~c~~~~~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~  139 (221)
                      ++|.+.    .+.|..  ..++.+--. ....+..+++    +.|.+.+..+..+.++++|++|++++|.+++ ..|..|
T Consensus         5 ~~c~~~~~~~~~~c~~--~~l~~ip~~-~~~~l~~L~L----s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~   76 (606)
T 3vq2_A            5 NPCIEVVPNITYQCMD--QKLSKVPDD-IPSSTKNIDL----SFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAW   76 (606)
T ss_dssp             -CCEEEETTTEEECTT--SCCSSCCTT-SCTTCCEEEC----TTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTT
T ss_pred             CCceecCCCCceEccC--CCcccCCCC-CCCCcCEEEC----CCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHh
Confidence            456552    577765  334433211 1123333333    3478888888889999999999999999996 567788


Q ss_pred             cCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCC-CCCcccccccc
Q 027602          140 GSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMG-FTDTKLVSVIT  216 (221)
Q Consensus       140 ~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~~~  216 (221)
                      ..+++|++|++++|.+++..|..++++++|++|++++|.++ ...+ .+.++++|++|++++|.+++ .+|..+..+.+
T Consensus        77 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~  154 (606)
T 3vq2_A           77 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN  154 (606)
T ss_dssp             TTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred             hchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence            99999999999999999888999999999999999999996 3333 78889999999999999987 78887765543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.54  E-value=2.4e-14  Score=128.00  Aligned_cols=112  Identities=19%  Similarity=0.078  Sum_probs=95.7

Q ss_pred             CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602          102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                      ++|++++..+..|.++++|++|+|++|++++ ..|..|.++++|++|+|++|++++..+..|.++++|++|++++|+++ 
T Consensus        60 s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-  137 (635)
T 4g8a_A           60 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-  137 (635)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-
T ss_pred             eCCCCCCCCHHHHhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-
Confidence            4588988878899999999999999999995 44567999999999999999999766677899999999999999997 


Q ss_pred             cCCC-cCCCCCCCCEEEcccCCCCC-CCCccccccc
Q 027602          182 VNFG-WLSGLSFLEHLDFSTTRKMG-FTDTKLVSVI  215 (221)
Q Consensus       182 ~~~p-~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~~  215 (221)
                      +..+ .+.++++|++|++++|.+++ .+|..+..+.
T Consensus       138 ~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~  173 (635)
T 4g8a_A          138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT  173 (635)
T ss_dssp             CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             CCChhhhhcCcccCeeccccCccccCCCchhhccch
Confidence            4334 68899999999999999986 4677665443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.54  E-value=8.6e-14  Score=113.45  Aligned_cols=109  Identities=23%  Similarity=0.224  Sum_probs=86.1

Q ss_pred             CCCCCccccCccccCCCCCcEEeCccCC-CCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCC
Q 027602          102 PRSMLVGKVNPSLLDLEHLSYLDLSFND-FQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLY  180 (221)
Q Consensus       102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~-l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~  180 (221)
                      ..|.+.+..|..+.++++|++|++++|. ++. ..|..+..+++|++|++++|.+++..|..+.++++|++|++++|.++
T Consensus        64 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  142 (285)
T 1ozn_A           64 HSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ  142 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSCTTCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCccceeCHhhcCCccCCCEEeCCCCCCccc-cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc
Confidence            3467777778888888899999999887 764 44677888889999999999888777777888899999999999886


Q ss_pred             CcCCC-cCCCCCCCCEEEcccCCCCCCCCcccc
Q 027602          181 VVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLV  212 (221)
Q Consensus       181 ~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~  212 (221)
                       ...+ .+..+++|++|++++|++++..+..+.
T Consensus       143 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  174 (285)
T 1ozn_A          143 -ALPDDTFRDLGNLTHLFLHGNRISSVPERAFR  174 (285)
T ss_dssp             -CCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             -ccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence             3333 577888999999999988875554443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.54  E-value=3.1e-14  Score=115.58  Aligned_cols=102  Identities=22%  Similarity=0.154  Sum_probs=51.6

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC-CCccccCCCCCCCEEeCcCCCCCCc
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG-VIPHQLGNLSSLRYLDLSRNFLYVV  182 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g-~~p~~l~~l~~L~~L~l~~N~l~~~  182 (221)
                      |.+.+..+..+.++++|++|++++|.+++ ..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|+++ .
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~  163 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-S  163 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-E
T ss_pred             CccCccChhhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-c
Confidence            44554444555555555555555555553 333345555555555555555543 23555555555555555555554 2


Q ss_pred             CCC-cCCCCCCCC----EEEcccCCCCCCC
Q 027602          183 NFG-WLSGLSFLE----HLDFSTTRKMGFT  207 (221)
Q Consensus       183 ~~p-~~~~l~~L~----~L~l~~N~l~g~i  207 (221)
                      ..+ .+..+.+|+    +|++++|++++..
T Consensus       164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~  193 (276)
T 2z62_A          164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ  193 (276)
T ss_dssp             ECGGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred             CCHHHhhhhhhccccceeeecCCCcccccC
Confidence            222 333333333    5555555555433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.54  E-value=6e-14  Score=111.26  Aligned_cols=112  Identities=21%  Similarity=0.105  Sum_probs=95.8

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG  157 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g  157 (221)
                      ..++.|++++                |.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++ 
T Consensus        64 ~~L~~L~L~~----------------N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~-  125 (229)
T 3e6j_A           64 INLKELYLGS----------------NQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-  125 (229)
T ss_dssp             TTCCEEECCS----------------SCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             cCCcEEECCC----------------CCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeEeccCCccc-
Confidence            4577888887                58865555667899999999999999996 44556789999999999999998 


Q ss_pred             CCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602          158 VIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       158 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      .+|..+..+++|++|++++|+++ ...+ .+..+++|++|++++|.+++..+
T Consensus       126 ~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          126 ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            78999999999999999999997 3333 67889999999999999998765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.54  E-value=1.9e-14  Score=128.55  Aligned_cols=109  Identities=20%  Similarity=0.165  Sum_probs=97.1

Q ss_pred             cEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCC
Q 027602           79 HILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV  158 (221)
Q Consensus        79 ~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~  158 (221)
                      .++.|++++                |.+.+ +|. +.++++|+.|++++|.++  .+|..++.+++|++|++++|.+++ 
T Consensus       442 ~L~~L~Ls~----------------n~l~~-lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~-  500 (567)
T 1dce_A          442 DVRVLHLAH----------------KDLTV-LCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-  500 (567)
T ss_dssp             TCSEEECTT----------------SCCSS-CCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred             CceEEEecC----------------CCCCC-CcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC-
Confidence            366788887                58876 676 999999999999999999  789999999999999999999996 


Q ss_pred             CccccCCCCCCCEEeCcCCCCCCcCC-C-cCCCCCCCCEEEcccCCCCCCCCcc
Q 027602          159 IPHQLGNLSSLRYLDLSRNFLYVVNF-G-WLSGLSFLEHLDFSTTRKMGFTDTK  210 (221)
Q Consensus       159 ~p~~l~~l~~L~~L~l~~N~l~~~~~-p-~~~~l~~L~~L~l~~N~l~g~ip~~  210 (221)
                      +| .++.+++|++|++++|.++ +.. | .+..+++|++|++++|++++.+|..
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~-~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             Cc-ccCCCCCCcEEECCCCCCC-CCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            77 8999999999999999997 443 5 8889999999999999999987754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=2.2e-14  Score=128.74  Aligned_cols=105  Identities=15%  Similarity=0.078  Sum_probs=79.7

Q ss_pred             CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602          103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV  182 (221)
Q Consensus       103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~  182 (221)
                      .|.+.+..|..+..+++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+..++++++|++|++++|.++ +
T Consensus        84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~  161 (597)
T 3oja_B           84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-R  161 (597)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-B
T ss_pred             CCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-C
Confidence            467777777788888888888888888886 55666788888888888888887443444578888888888888886 4


Q ss_pred             CCC-cCCCCCCCCEEEcccCCCCCCCCc
Q 027602          183 NFG-WLSGLSFLEHLDFSTTRKMGFTDT  209 (221)
Q Consensus       183 ~~p-~~~~l~~L~~L~l~~N~l~g~ip~  209 (221)
                      .+| .+..+++|++|++++|.+++.-+.
T Consensus       162 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~  189 (597)
T 3oja_B          162 IEDDTFQATTSLQNLQLSSNRLTHVDLS  189 (597)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSBCCGG
T ss_pred             CChhhhhcCCcCcEEECcCCCCCCcChh
Confidence            444 677788888888888888875433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.53  E-value=4.3e-14  Score=123.15  Aligned_cols=103  Identities=17%  Similarity=0.154  Sum_probs=62.0

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..|..|.++++|++|++++|.+++ ..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.+. ..
T Consensus        66 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~  143 (477)
T 2id5_A           66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YI  143 (477)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EE
T ss_pred             CccCEeChhhhhCCccCCEEECCCCcCCc-cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-ee
Confidence            55555556666666666666666666663 22233556666666666666666555556666666666666666664 22


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      .+ .+..+++|++|++++|++++..+
T Consensus       144 ~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A          144 SHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             ChhhccCCCCCCEEECCCCcCcccCh
Confidence            23 55666666666666666665443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.53  E-value=4e-14  Score=122.38  Aligned_cols=105  Identities=18%  Similarity=0.121  Sum_probs=83.6

Q ss_pred             CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602          102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                      +.|.+.+..|..+.++++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++ 
T Consensus       307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-  384 (455)
T 3v47_A          307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-  384 (455)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-
T ss_pred             CCCcccccChhHhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc-
Confidence            3467777777778888888888888888876 55677788888888888888888777888888888888888888886 


Q ss_pred             cCCC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602          182 VNFG-WLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       182 ~~~p-~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      ...+ .+..+++|++|++++|++++.+|
T Consensus       385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          385 SVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCCHhHhccCCcccEEEccCCCcccCCC
Confidence            3333 46778888888888888888887

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.53  E-value=6.1e-14  Score=125.49  Aligned_cols=109  Identities=16%  Similarity=0.064  Sum_probs=66.8

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..|..|.++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..++++++|++|++++|.+++..
T Consensus        67 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~  145 (606)
T 3t6q_A           67 CQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK  145 (606)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTCCCSE-ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC
T ss_pred             CccceeChhhccCccccCeeeCCCCcccc-cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccC
Confidence            55555556666666666666666666665 45556666666666666666666544555666666666666666665334


Q ss_pred             CCcCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602          184 FGWLSGLSFLEHLDFSTTRKMGFTDTKLVS  213 (221)
Q Consensus       184 ~p~~~~l~~L~~L~l~~N~l~g~ip~~~~~  213 (221)
                      +|.+..+++|++|++++|++++..|..+..
T Consensus       146 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  175 (606)
T 3t6q_A          146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSS  175 (606)
T ss_dssp             CCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred             cccccCCcccCEEEcccCcccccChhhhhh
Confidence            454445666666666666666655544433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.53  E-value=2e-14  Score=122.19  Aligned_cols=101  Identities=17%  Similarity=0.134  Sum_probs=75.1

Q ss_pred             CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccc-cCCCCCCCEEeCcCCCCCC
Q 027602          103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQ-LGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~-l~~l~~L~~L~l~~N~l~~  181 (221)
                      .|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.++ .+|.. +.++++|++|++++|.+. 
T Consensus        78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-  154 (390)
T 3o6n_A           78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-  154 (390)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             CCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC-
Confidence            366666666677888888888888888886 55566778888888888888887 45544 577888888888888876 


Q ss_pred             cCCC-cCCCCCCCCEEEcccCCCCCC
Q 027602          182 VNFG-WLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       182 ~~~p-~~~~l~~L~~L~l~~N~l~g~  206 (221)
                      ...+ .+..+++|++|++++|++++.
T Consensus       155 ~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          155 RIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             BCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             ccChhhccCCCCCCEEECCCCcCCcc
Confidence            3334 577788888888888888764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.52  E-value=5.2e-15  Score=133.85  Aligned_cols=101  Identities=16%  Similarity=0.209  Sum_probs=91.1

Q ss_pred             cCcccc--CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCc-CCC-CCccccCCC------CCCCEEeCcCCCC
Q 027602          110 VNPSLL--DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQ-FGG-VIPHQLGNL------SSLRYLDLSRNFL  179 (221)
Q Consensus       110 ~p~~l~--~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~-l~g-~~p~~l~~l------~~L~~L~l~~N~l  179 (221)
                      +|+.+.  ++++|++|++++|.+.| .+|..++++++|++|++++|+ ++| .+|..++.+      ++|++|++++|.+
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence            999999  99999999999999999 999999999999999999998 998 899888776      9999999999999


Q ss_pred             CCcCCC---cCCCCCCCCEEEcccCCCCCCCCcccccc
Q 027602          180 YVVNFG---WLSGLSFLEHLDFSTTRKMGFTDTKLVSV  214 (221)
Q Consensus       180 ~~~~~p---~~~~l~~L~~L~l~~N~l~g~ip~~~~~~  214 (221)
                      +  .+|   .+..+++|++|++++|+++|.+| .+..+
T Consensus       318 ~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l  352 (636)
T 4eco_A          318 K--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE  352 (636)
T ss_dssp             S--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred             C--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence            6  555   48889999999999999999999 55443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.52  E-value=6.8e-14  Score=126.87  Aligned_cols=130  Identities=18%  Similarity=0.096  Sum_probs=88.0

Q ss_pred             CcEEEEEcCCCC-CCCCC------CccccC-CCCCCCccccCccccCCCCCcEEeCccCCCCCCcccc-cccCCCCCcEE
Q 027602           78 GHILELNLRNPF-NYYVQ------PDQFEA-NPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPR-FIGSMGNQKYL  148 (221)
Q Consensus        78 ~~v~~l~l~~~~-~~l~~------~~~~~~-~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~-~~~~l~~L~~L  148 (221)
                      .+++.++++++. ..+..      ..+..+ .+.|.+.+..|..+.++++|++|++++|.+++  +|. .|..+++|++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTEL  102 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc--cChhhhccCCCCCEE
Confidence            468888888753 11110      011111 13466777777777778888888888888774  444 57778888888


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCcc
Q 027602          149 NLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTK  210 (221)
Q Consensus       149 ~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~  210 (221)
                      ++++|.+++..|..++++++|++|++++|.++ +..+ .+.++++|++|++++|.+++..|..
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  164 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEE  164 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCccc-ccCchhhcccccCCEEEccCCcccccCHHH
Confidence            88888877655667778888888888888876 3444 5667888888888888887766543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.52  E-value=1.1e-13  Score=112.88  Aligned_cols=103  Identities=22%  Similarity=0.135  Sum_probs=53.9

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..|..+.++++|++|++++|.+++ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++ +.
T Consensus       115 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~  192 (285)
T 1ozn_A          115 CGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HV  192 (285)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred             CcCCEECHhHhhCCcCCCEEECCCCcccc-cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc-cc
Confidence            44444444445555555555555555553 22333555555555555555555333334555555566666555554 23


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      .| .+..+++|++|++++|++++..+
T Consensus       193 ~~~~~~~l~~L~~L~l~~n~l~~~~~  218 (285)
T 1ozn_A          193 HPHAFRDLGRLMTLYLFANNLSALPT  218 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             CHhHccCcccccEeeCCCCcCCcCCH
Confidence            23 45555666666666666665433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.52  E-value=7.4e-14  Score=116.92  Aligned_cols=97  Identities=25%  Similarity=0.174  Sum_probs=82.6

Q ss_pred             CCccccCccccCCCCCcEEeCcc-CCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          105 MLVGKVNPSLLDLEHLSYLDLSF-NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       105 ~l~g~~p~~l~~l~~L~~L~L~~-n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      ++.+ +|. +..+++|+.|+|++ |.+++ ..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|+|+ +.
T Consensus        20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~   95 (347)
T 2ifg_A           20 ALDS-LHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SL   95 (347)
T ss_dssp             CCTT-TTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CC
T ss_pred             CCCc-cCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-ee
Confidence            5553 777 99999999999996 99996 55577999999999999999999988888999999999999999997 44


Q ss_pred             CCc-CCCCCCCCEEEcccCCCCCC
Q 027602          184 FGW-LSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       184 ~p~-~~~l~~L~~L~l~~N~l~g~  206 (221)
                      ++. +..++ |++|++.+|.|...
T Consensus        96 ~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           96 SWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CHHHcccCC-ceEEEeeCCCccCC
Confidence            444 44444 99999999999864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=2e-13  Score=105.53  Aligned_cols=104  Identities=17%  Similarity=0.170  Sum_probs=88.4

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+. .+|..+.  ++|++|++++|.++  .+|..+..+++|++|++++|.+++..+..+.++++|++|++++|.++ ..
T Consensus        20 ~~l~-~ip~~~~--~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~-~i   93 (193)
T 2wfh_A           20 KGLK-VLPKGIP--RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI   93 (193)
T ss_dssp             SCCS-SCCSCCC--TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BC
T ss_pred             CCCC-cCCCCCC--CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC-Ee
Confidence            3554 5666553  68999999999999  78999999999999999999999877788999999999999999997 44


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS  213 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~  213 (221)
                      .+ .+..+++|++|++++|++++..+..+..
T Consensus        94 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~  124 (193)
T 2wfh_A           94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFND  124 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             CHHHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence            44 7889999999999999999765544543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.52  E-value=1.1e-13  Score=119.67  Aligned_cols=99  Identities=19%  Similarity=0.116  Sum_probs=51.5

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..+..|.++++|++|++++|.+++ ..+..+..+++|++|++++|.++...+..+.++++|++|++++|+.. ..
T Consensus        98 n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l-~~  175 (440)
T 3zyj_A           98 NHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL-SY  175 (440)
T ss_dssp             SCCCEECGGGGTTCSSCCEEECCSSCCSS-CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC-CE
T ss_pred             CcCCccChhhccCCccCCEEECCCCcCCe-eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc-ce
Confidence            44444444455555555555555555553 22233555555555555555555433344555555555555553322 22


Q ss_pred             CC--cCCCCCCCCEEEcccCCCC
Q 027602          184 FG--WLSGLSFLEHLDFSTTRKM  204 (221)
Q Consensus       184 ~p--~~~~l~~L~~L~l~~N~l~  204 (221)
                      ++  .+.++++|++|++++|+++
T Consensus       176 i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          176 ISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             ECTTTTTTCSSCCEEECTTSCCS
T ss_pred             eCcchhhcccccCeecCCCCcCc
Confidence            22  4555666666666666666

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.52  E-value=2.3e-14  Score=117.90  Aligned_cols=146  Identities=22%  Similarity=0.265  Sum_probs=95.5

Q ss_pred             cccccceEEcCCC---------CcEEEEEcCCCC-CCCC------CCccccCC-CCCCCc--cccCccccCCCCCcEEeC
Q 027602           65 CCLWAGVICDNVT---------GHILELNLRNPF-NYYV------QPDQFEAN-PRSMLV--GKVNPSLLDLEHLSYLDL  125 (221)
Q Consensus        65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~-~~l~------~~~~~~~~-~~n~l~--g~~p~~l~~l~~L~~L~L  125 (221)
                      .|.|.++.|....         ..++.++++++. ..+.      ...+..+. +.|.+.  +..+..+..+++|++|++
T Consensus         6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            4899999997522         367888888753 1110      11111111 335554  333555666777777777


Q ss_pred             ccCCCCCCcccccccCCCCCcEEEccCCcCCCCCc-cccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCC
Q 027602          126 SFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIP-HQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRK  203 (221)
Q Consensus       126 ~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p-~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l  203 (221)
                      ++|.++  .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. +..+ .+..+++|++|++++|.+
T Consensus        86 s~n~i~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           86 SFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             CSCSEE--EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEE
T ss_pred             CCCccc--cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCcc
Confidence            777777  567777778888888888888775443 46777888888888888875 4444 566788888888888888


Q ss_pred             CC-CCCccccc
Q 027602          204 MG-FTDTKLVS  213 (221)
Q Consensus       204 ~g-~ip~~~~~  213 (221)
                      ++ .+|..+..
T Consensus       163 ~~~~~~~~~~~  173 (306)
T 2z66_A          163 QENFLPDIFTE  173 (306)
T ss_dssp             GGGEECSCCTT
T ss_pred             ccccchhHHhh
Confidence            77 45655433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.51  E-value=5.3e-14  Score=115.73  Aligned_cols=108  Identities=25%  Similarity=0.293  Sum_probs=74.6

Q ss_pred             CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602          103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV  182 (221)
Q Consensus       103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~  182 (221)
                      .|.+.+..+..+..+++|++|++++|.+++..+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .
T Consensus       135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~  213 (306)
T 2z66_A          135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-S  213 (306)
T ss_dssp             TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-B
T ss_pred             CCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-c
Confidence            356666666667777777777777777764125666777777777777777777666667777777777777777775 3


Q ss_pred             CCC-cCCCCCCCCEEEcccCCCCCCCCccc
Q 027602          183 NFG-WLSGLSFLEHLDFSTTRKMGFTDTKL  211 (221)
Q Consensus       183 ~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~  211 (221)
                      ..+ .+..+++|++|++++|++++.+|..+
T Consensus       214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             CCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            333 56667777777777777777766554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.51  E-value=6e-14  Score=130.61  Aligned_cols=146  Identities=18%  Similarity=0.177  Sum_probs=104.1

Q ss_pred             ccccceEEcCCCCcEEEEEcCCCC-C-----CC-CCCccccCC-CCCCCcccc-CccccCCCCCcEEeCccCCCCCCccc
Q 027602           66 CLWAGVICDNVTGHILELNLRNPF-N-----YY-VQPDQFEAN-PRSMLVGKV-NPSLLDLEHLSYLDLSFNDFQGVQIP  136 (221)
Q Consensus        66 c~w~gv~c~~~~~~v~~l~l~~~~-~-----~l-~~~~~~~~~-~~n~l~g~~-p~~l~~l~~L~~L~L~~n~l~g~~ip  136 (221)
                      |.|..|.+  ...+++.|+|+++. .     .+ ....+..++ +.|...+.+ |..|.++++|++|+|++|.+++ ..|
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p   90 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHP   90 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-cCH
Confidence            45666665  34678899998764 0     00 001111111 234456666 6678888888888888888886 668


Q ss_pred             ccccCCCCCcEEEccCCcCCCCCccc--cCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602          137 RFIGSMGNQKYLNLLGSQFGGVIPHQ--LGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS  213 (221)
Q Consensus       137 ~~~~~l~~L~~L~l~~N~l~g~~p~~--l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~  213 (221)
                      ..+..+++|++|++++|.+++.+|..  ++++++|++|++++|.+++..++ .+.++++|++|++++|.+++..|..+..
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            88888888888888888888766665  78888888888888888743343 6788888899999988888888776654


Q ss_pred             c
Q 027602          214 V  214 (221)
Q Consensus       214 ~  214 (221)
                      +
T Consensus       171 l  171 (844)
T 3j0a_A          171 L  171 (844)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.51  E-value=2.3e-13  Score=111.66  Aligned_cols=106  Identities=23%  Similarity=0.213  Sum_probs=81.4

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+. .+|..+..+++|++|++++|++++ ..|..|..+++|++|++++|++++..+..+..+++|++|++++|+++ ..
T Consensus        87 N~l~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l  163 (290)
T 1p9a_G           87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL  163 (290)
T ss_dssp             SCCS-SCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CC
T ss_pred             CcCC-cCchhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-cc
Confidence            5555 677778888889999999998885 44566888888999999999888655566778888999999988886 33


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS  213 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~  213 (221)
                      .+ .+..+++|++|++++|+++ .+|..+..
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~  193 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             CHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence            33 4567888999999998888 56655433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.51  E-value=1.1e-13  Score=120.05  Aligned_cols=100  Identities=16%  Similarity=0.057  Sum_probs=48.0

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..+..|.++++|++|++++|.+++ ..+..+..+++|++|++++|.++...+..+.++++|++|++++|+.. +.
T Consensus       109 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l-~~  186 (452)
T 3zyi_A          109 NSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL-EY  186 (452)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC-CE
T ss_pred             CccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc-cc
Confidence            44444444444445555555555555442 22223444455555555555544333334444555555555543222 22


Q ss_pred             CC--cCCCCCCCCEEEcccCCCCC
Q 027602          184 FG--WLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       184 ~p--~~~~l~~L~~L~l~~N~l~g  205 (221)
                      ++  .+..+++|++|++++|++++
T Consensus       187 i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          187 ISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             cChhhccCCCCCCEEECCCCcccc
Confidence            22  35556666666666666665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.49  E-value=7.1e-14  Score=108.18  Aligned_cols=90  Identities=18%  Similarity=0.178  Sum_probs=47.1

Q ss_pred             cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCC-CCCcCCCcCCCCC
Q 027602          113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF-LYVVNFGWLSGLS  191 (221)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~-l~~~~~p~~~~l~  191 (221)
                      .+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|. +  ..+|.+..++
T Consensus        83 ~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i--~~~~~l~~l~  159 (197)
T 4ezg_A           83 PISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI--TDIMPLKTLP  159 (197)
T ss_dssp             GGTTCTTCCEEEEECTTCBG-GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC--CCCGGGGGCS
T ss_pred             hhhcCCCCCEEEeECCccCc-ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc--cccHhhcCCC
Confidence            44455555555555555554 344455555555555555555554445555555555555555554 3  2344444555


Q ss_pred             CCCEEEcccCCCCC
Q 027602          192 FLEHLDFSTTRKMG  205 (221)
Q Consensus       192 ~L~~L~l~~N~l~g  205 (221)
                      +|++|++++|++++
T Consensus       160 ~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          160 ELKSLNIQFDGVHD  173 (197)
T ss_dssp             SCCEEECTTBCCCC
T ss_pred             CCCEEECCCCCCcC
Confidence            55555555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=8.2e-14  Score=122.30  Aligned_cols=102  Identities=17%  Similarity=0.057  Sum_probs=58.7

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCccccccc-CCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIG-SMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV  182 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~-~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~  182 (221)
                      |.+.+..|..+..+++|+.|++++|.+++ .+|..+. .+++|++|++++|.+++. | ....+++|++|++++|.++ +
T Consensus       130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~  205 (487)
T 3oja_A          130 NKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-F  205 (487)
T ss_dssp             SCCCSGGGBCGGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-E
T ss_pred             CCCCCCCchhhcCCCCCCEEECCCCCCCC-cChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCC-C
Confidence            45666656666666666666666666665 4555543 456666666666666543 2 2334566666666666664 3


Q ss_pred             CCCcCCCCCCCCEEEcccCCCCCCCCcc
Q 027602          183 NFGWLSGLSFLEHLDFSTTRKMGFTDTK  210 (221)
Q Consensus       183 ~~p~~~~l~~L~~L~l~~N~l~g~ip~~  210 (221)
                      .+|.+..+++|++|++++|.+++ +|..
T Consensus       206 ~~~~~~~l~~L~~L~Ls~N~l~~-lp~~  232 (487)
T 3oja_A          206 MGPEFQSAAGVTWISLRNNKLVL-IEKA  232 (487)
T ss_dssp             ECGGGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred             CCHhHcCCCCccEEEecCCcCcc-cchh
Confidence            33455555666666666666664 4433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.49  E-value=2.8e-13  Score=111.22  Aligned_cols=103  Identities=22%  Similarity=0.159  Sum_probs=75.1

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..+ . ..+++|++|++++|.++  .+|..+..+++|++|++++|++++..|..+.++++|++|++++|+++ ..
T Consensus        65 n~l~~~~~-~-~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~  139 (290)
T 1p9a_G           65 AELTKLQV-D-GTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL  139 (290)
T ss_dssp             SCCCEEEC-C-SCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CC
T ss_pred             CccCcccC-C-CCCCcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-cc
Confidence            45554322 2 56777777778778777  57777778888888888888888665667888888888888888886 33


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCCccc
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKL  211 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~  211 (221)
                      .+ .+..+++|++|++++|++++..+..+
T Consensus       140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  168 (290)
T 1p9a_G          140 PPGLLTPTPKLEKLSLANNNLTELPAGLL  168 (290)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred             ChhhcccccCCCEEECCCCcCCccCHHHh
Confidence            33 56678888888888888886544333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.48  E-value=2.4e-13  Score=120.54  Aligned_cols=114  Identities=22%  Similarity=0.294  Sum_probs=77.2

Q ss_pred             CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602          103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV  182 (221)
Q Consensus       103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~  182 (221)
                      .|.+.+..|..|.++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..++++++|++|++++|.++..
T Consensus        61 ~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~  139 (570)
T 2z63_A           61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF  139 (570)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC
T ss_pred             CCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCcccee
Confidence            356666656667777777777777777775 4445677777777777777777654444577777777777777777633


Q ss_pred             CCC-cCCCCCCCCEEEcccCCCCCCCCccccccccC
Q 027602          183 NFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVITF  217 (221)
Q Consensus       183 ~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~  217 (221)
                      .+| .+.++++|++|++++|++++..|..+..+.++
T Consensus       140 ~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A          140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             cChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            455 56677777777777777777666655554444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.47  E-value=1.7e-13  Score=115.77  Aligned_cols=100  Identities=20%  Similarity=0.138  Sum_probs=43.0

Q ss_pred             CCCccccCcccc-CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602          104 SMLVGKVNPSLL-DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV  182 (221)
Q Consensus       104 n~l~g~~p~~l~-~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~  182 (221)
                      |.+.+..+..+. ++++|+.|++++|.+++ ..|..|..+++|++|+|++|++++..+..+..+++|++|++++|.++ .
T Consensus        49 N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~  126 (361)
T 2xot_A           49 NNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-V  126 (361)
T ss_dssp             SCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-E
T ss_pred             CCCCccChhhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-E
Confidence            344433333333 44444444444444443 22233444444444444444444333333444444444444444443 2


Q ss_pred             CCC-cCCCCCCCCEEEcccCCCCC
Q 027602          183 NFG-WLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       183 ~~p-~~~~l~~L~~L~l~~N~l~g  205 (221)
                      ..+ .+..+++|++|++++|+|++
T Consensus       127 ~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A          127 VDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             ECHHHhCCcccCCEEECCCCcCCe
Confidence            212 34444444444444444444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.46  E-value=1.7e-13  Score=106.04  Aligned_cols=99  Identities=18%  Similarity=0.172  Sum_probs=81.8

Q ss_pred             CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602          103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV  182 (221)
Q Consensus       103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~  182 (221)
                      .|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+| .+..+++|++|++++|.++  
T Consensus        97 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~--  172 (197)
T 4ezg_A           97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDD-SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH--  172 (197)
T ss_dssp             CTTCBGGGSCCCTTCTTCCEEECCSSBCBG-GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC--
T ss_pred             CCccCcccChhhcCCCCCCEEEecCCccCc-HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc--
Confidence            478888888889999999999999999997 778888999999999999998444666 6888999999999999985  


Q ss_pred             CCCcCCCCCCCCEEEcccCCCCC
Q 027602          183 NFGWLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       183 ~~p~~~~l~~L~~L~l~~N~l~g  205 (221)
                      .++.+..+++|++|++++|++.+
T Consensus       173 ~~~~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          173 DYRGIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCTTGGGCSSCCEEEECBC----
T ss_pred             ChHHhccCCCCCEEEeeCcccCC
Confidence            45677888999999999999875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.46  E-value=1.6e-13  Score=122.70  Aligned_cols=117  Identities=16%  Similarity=0.067  Sum_probs=100.1

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG  157 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g  157 (221)
                      ..++.+++++                |.+.+..|..|.++++|++|++++|.+++ ..|..|..+++|++|++++|.+++
T Consensus        33 ~~l~~L~Ls~----------------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~   95 (606)
T 3t6q_A           33 NSTECLEFSF----------------NVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIF   95 (606)
T ss_dssp             TTCCEEECTT----------------CCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSE
T ss_pred             CcCcEEEccC----------------CccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCCcccc
Confidence            3577888887                68988888899999999999999999997 678889999999999999999998


Q ss_pred             CCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCC-CCCccc
Q 027602          158 VIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMG-FTDTKL  211 (221)
Q Consensus       158 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g-~ip~~~  211 (221)
                      ..|..++++++|++|++++|.++......+..+++|++|++++|++++ .+|...
T Consensus        96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  150 (606)
T 3t6q_A           96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF  150 (606)
T ss_dssp             ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC
T ss_pred             cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccccc
Confidence            888899999999999999999973222378889999999999999998 455443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.46  E-value=1.7e-13  Score=108.98  Aligned_cols=99  Identities=14%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             CccccCccccCCCCCcEEeCcc-CCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCC---EEeCcCC-CCC
Q 027602          106 LVGKVNPSLLDLEHLSYLDLSF-NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR---YLDLSRN-FLY  180 (221)
Q Consensus       106 l~g~~p~~l~~l~~L~~L~L~~-n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~---~L~l~~N-~l~  180 (221)
                      +.+..+..+.++++|++|++++ |.+++ ..+..+..+++|++|++++|.+++ +|. +..+++|+   +|++++| .++
T Consensus        68 l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~  144 (239)
T 2xwt_C           68 LQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT  144 (239)
T ss_dssp             CCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred             cceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh
Confidence            4444444566666666666666 66663 223455666666666666666664 554 66666666   6777766 664


Q ss_pred             CcCCC-cCCCCCCCC-EEEcccCCCCCCCCc
Q 027602          181 VVNFG-WLSGLSFLE-HLDFSTTRKMGFTDT  209 (221)
Q Consensus       181 ~~~~p-~~~~l~~L~-~L~l~~N~l~g~ip~  209 (221)
                       ...+ .+..+++|+ +|++++|+++ .+|.
T Consensus       145 -~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~  173 (239)
T 2xwt_C          145 -SIPVNAFQGLCNETLTLKLYNNGFT-SVQG  173 (239)
T ss_dssp             -EECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred             -hcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence             2222 456667777 7777777776 5553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.46  E-value=5.7e-13  Score=110.91  Aligned_cols=119  Identities=20%  Similarity=0.199  Sum_probs=79.2

Q ss_pred             cccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcc
Q 027602           65 CCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQI  135 (221)
Q Consensus        65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~i  135 (221)
                      .|.|..+.|....         ..++.+++++                |.+.+..|..+.++++|++|++++|.+++ ..
T Consensus        32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~----------------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~   94 (332)
T 2ft3_A           32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQN----------------NDISELRKDDFKGLQHLYALVLVNNKISK-IH   94 (332)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCS----------------SCCCEECTTTTTTCTTCCEEECCSSCCCE-EC
T ss_pred             cccCCEEECCCCCccccCCCCCCCCeEEECCC----------------CcCCccCHhHhhCCCCCcEEECCCCccCc-cC
Confidence            4789999986421         2466677766                46666666667777777777777777775 45


Q ss_pred             cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCC
Q 027602          136 PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKM  204 (221)
Q Consensus       136 p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~  204 (221)
                      |..+..+++|++|++++|.++ .+|..+.  ++|++|++++|.+. ...+ .+..+++|++|++++|.++
T Consensus        95 ~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A           95 EKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             GGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             HhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccc
Confidence            666777777777777777776 5555444  56777777777764 2222 4566777777777777664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.46  E-value=1.5e-12  Score=98.86  Aligned_cols=104  Identities=19%  Similarity=0.154  Sum_probs=83.8

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |++. .+|..+  .++|+.|++++|.+++ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ +.
T Consensus        17 ~~l~-~~p~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~   91 (177)
T 2o6r_A           17 KGLT-SVPTGI--PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SL   91 (177)
T ss_dssp             SCCS-SCCTTC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             CCCc-cCCCCC--CCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-cc
Confidence            3554 445443  3789999999999996 55556789999999999999999666666799999999999999997 44


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCCcccc
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKLV  212 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~  212 (221)
                      ++ .+..+++|++|++++|++++..+..+.
T Consensus        92 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  121 (177)
T 2o6r_A           92 PNGVFDKLTQLKELALDTNQLKSVPDGIFD  121 (177)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             CHHHhhCCcccCEEECcCCcceEeCHHHhc
Confidence            44 578899999999999999976554443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.45  E-value=1.1e-13  Score=122.31  Aligned_cols=119  Identities=23%  Similarity=0.350  Sum_probs=102.7

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG  157 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g  157 (221)
                      .+++.+++++                |.+.+..|..+.++++|++|++++|.+++ ..|..++.+++|++|++++|.+++
T Consensus        50 ~~L~~L~Ls~----------------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~  112 (549)
T 2z81_A           50 ANLQVLILKS----------------SRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQT  112 (549)
T ss_dssp             TTCCEEECTT----------------SCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSS
T ss_pred             CcccEEECCC----------------CCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccc
Confidence            4677788877                68998888899999999999999999997 566669999999999999999986


Q ss_pred             -CCccccCCCCCCCEEeCcCCCCCCcCCC--cCCCCCCCCEEEcccCCCCCCCCcccccc
Q 027602          158 -VIPHQLGNLSSLRYLDLSRNFLYVVNFG--WLSGLSFLEHLDFSTTRKMGFTDTKLVSV  214 (221)
Q Consensus       158 -~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~~~l~~L~~L~l~~N~l~g~ip~~~~~~  214 (221)
                       ..|..++++++|++|++++|.+. +.+|  .+.++++|++|++++|++++.+|..+..+
T Consensus       113 ~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  171 (549)
T 2z81_A          113 LGVTSLFPNLTNLQTLRIGNVETF-SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI  171 (549)
T ss_dssp             SCSSCSCTTCTTCCEEEEEESSSC-CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             cchhhhhhccCCccEEECCCCccc-cccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence             46778999999999999999854 4444  68889999999999999999988776544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.45  E-value=2.9e-13  Score=120.01  Aligned_cols=120  Identities=19%  Similarity=0.080  Sum_probs=96.6

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG  157 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g  157 (221)
                      .+++.+++++                |.+.+..+..|.++++|++|++++|.+++ ..|..|..+++|++|++++|.+++
T Consensus        28 ~~l~~L~Ls~----------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~   90 (570)
T 2z63_A           28 FSTKNLDLSF----------------NPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQS   90 (570)
T ss_dssp             SSCCEEECCS----------------CCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             ccccEEEccC----------------CccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCc
Confidence            4577788877                58887777788889999999999999886 556678889999999999999887


Q ss_pred             CCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCC-CCCccccccc
Q 027602          158 VIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMG-FTDTKLVSVI  215 (221)
Q Consensus       158 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~~  215 (221)
                      ..|..+.++++|++|++++|.++ ...+ .+..+++|++|++++|.+++ .+|..+..+.
T Consensus        91 ~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~  149 (570)
T 2z63_A           91 LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT  149 (570)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             cCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccC
Confidence            76778888999999999999886 3222 57888999999999999887 5787765443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.45  E-value=7.5e-13  Score=110.05  Aligned_cols=125  Identities=18%  Similarity=0.157  Sum_probs=67.1

Q ss_pred             CcccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCc
Q 027602           64 DCCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQ  134 (221)
Q Consensus        64 ~~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~  134 (221)
                      ..|.|..+.|....         ..++.++++++                .+.+..+..+.++++|++|++++|.+++ .
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n----------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~   91 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN----------------KITEIKDGDFKNLKNLHTLILINNKISK-I   91 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSS----------------CCCCBCTTTTTTCTTCCEEECCSSCCCC-B
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCC----------------cCCEeChhhhccCCCCCEEECCCCcCCe-e
Confidence            35789999987421         34667777764                4444434344445555555555555543 3


Q ss_pred             ccccccCCCCCcEEEccCC---------------------cCCCCCccccCCCCCCCEEeCcCCCCCC-cCCC-cCCCCC
Q 027602          135 IPRFIGSMGNQKYLNLLGS---------------------QFGGVIPHQLGNLSSLRYLDLSRNFLYV-VNFG-WLSGLS  191 (221)
Q Consensus       135 ip~~~~~l~~L~~L~l~~N---------------------~l~g~~p~~l~~l~~L~~L~l~~N~l~~-~~~p-~~~~l~  191 (221)
                      .|..+..+++|++|++++|                     .+++..+..+.++++|++|++++|.+.. +..+ .+..++
T Consensus        92 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  171 (330)
T 1xku_A           92 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK  171 (330)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred             CHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence            3444444455555555544                     4444333445555666666666666531 1222 455566


Q ss_pred             CCCEEEcccCCCCC
Q 027602          192 FLEHLDFSTTRKMG  205 (221)
Q Consensus       192 ~L~~L~l~~N~l~g  205 (221)
                      +|++|++++|.++.
T Consensus       172 ~L~~L~l~~n~l~~  185 (330)
T 1xku_A          172 KLSYIRIADTNITT  185 (330)
T ss_dssp             TCCEEECCSSCCCS
T ss_pred             CcCEEECCCCcccc
Confidence            66666666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.44  E-value=6.7e-13  Score=119.09  Aligned_cols=108  Identities=16%  Similarity=0.055  Sum_probs=77.0

Q ss_pred             CCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCC
Q 027602          105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNF  184 (221)
Q Consensus       105 ~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~  184 (221)
                      .+....+..+.++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..++++++|++|++++|.++ ..+
T Consensus        62 ~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~  139 (597)
T 3oja_B           62 TMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP  139 (597)
T ss_dssp             EESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             CCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCC
Confidence            4443333346677888888888888876 55557778888888888888887766666778888888888888875 333


Q ss_pred             C-cCCCCCCCCEEEcccCCCCCCCCcccccc
Q 027602          185 G-WLSGLSFLEHLDFSTTRKMGFTDTKLVSV  214 (221)
Q Consensus       185 p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~  214 (221)
                      + .+..+++|++|++++|.+++..|..+..+
T Consensus       140 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  170 (597)
T 3oja_B          140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQAT  170 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred             HHHhccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence            3 35678888888888888887777655443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.44  E-value=4.7e-13  Score=117.69  Aligned_cols=99  Identities=23%  Similarity=0.180  Sum_probs=85.5

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..|..+.++++|++|++++|++++ ..|..+..+++|++|++++|+++ .+|..  .+++|++|++++|.+++..
T Consensus        31 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~  106 (520)
T 2z7x_B           31 NYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALP  106 (520)
T ss_dssp             SCCCCCCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCC
T ss_pred             CcccccChhhccccccccEEecCCCccCC-cChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCcccccc
Confidence            68887777889999999999999999997 66888999999999999999998 57766  8899999999999997445


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCC
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~  206 (221)
                      +| .+..+++|++|++++|++++.
T Consensus       107 ~p~~~~~l~~L~~L~L~~n~l~~~  130 (520)
T 2z7x_B          107 ICKEFGNMSQLKFLGLSTTHLEKS  130 (520)
T ss_dssp             CCGGGGGCTTCCEEEEEESSCCGG
T ss_pred             chhhhccCCcceEEEecCcccchh
Confidence            66 788899999999999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.43  E-value=4e-13  Score=125.07  Aligned_cols=107  Identities=19%  Similarity=0.200  Sum_probs=64.2

Q ss_pred             CCCCccccCccccCCCCCcEEeCccCCCCCCccccc--ccCCCCCcEEEccCCcCCCCCc-cccCCCCCCCEEeCcCCCC
Q 027602          103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRF--IGSMGNQKYLNLLGSQFGGVIP-HQLGNLSSLRYLDLSRNFL  179 (221)
Q Consensus       103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~--~~~l~~L~~L~l~~N~l~g~~p-~~l~~l~~L~~L~l~~N~l  179 (221)
                      .|.+.+..|..|.++++|++|++++|.+++ .+|..  +..+++|++|++++|.+++..| ..++++++|++|++++|.+
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSD-AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSS-CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCc-ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            355666666666666666666666666665 44443  5666666666666666655433 3556666666666666666


Q ss_pred             CCcCCC-cCCCC--CCCCEEEcccCCCCCCCCccc
Q 027602          180 YVVNFG-WLSGL--SFLEHLDFSTTRKMGFTDTKL  211 (221)
Q Consensus       180 ~~~~~p-~~~~l--~~L~~L~l~~N~l~g~ip~~~  211 (221)
                      + +..+ .+..+  ++|+.|++++|.+++.+|..+
T Consensus       161 ~-~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~  194 (844)
T 3j0a_A          161 F-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW  194 (844)
T ss_dssp             C-CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred             C-eeCHHHcccccCCccceEECCCCccccccccch
Confidence            5 3333 44444  566666666666666665544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.43  E-value=2.4e-13  Score=119.54  Aligned_cols=107  Identities=22%  Similarity=0.197  Sum_probs=92.2

Q ss_pred             CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC-CCccccCCCCCCCEEeCcCCCCC
Q 027602          102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG-VIPHQLGNLSSLRYLDLSRNFLY  180 (221)
Q Consensus       102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g-~~p~~l~~l~~L~~L~l~~N~l~  180 (221)
                      +.|.+.+..|..+.++++|++|++++|.++  .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.++
T Consensus        53 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           53 SHNRIQYLDISVFKFNQELEYLDLSHNKLV--KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             CSSCCCEEEGGGGTTCTTCCEEECCSSCCC--EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             CCCccCCcChHHhhcccCCCEEecCCCcee--ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence            447888888999999999999999999999  68876  79999999999999987 57889999999999999999997


Q ss_pred             CcCCCcCCCCCCC--CEEEcccCCC--CCCCCccccccc
Q 027602          181 VVNFGWLSGLSFL--EHLDFSTTRK--MGFTDTKLVSVI  215 (221)
Q Consensus       181 ~~~~p~~~~l~~L--~~L~l~~N~l--~g~ip~~~~~~~  215 (221)
                      .   ..+..+++|  ++|++++|.+  ++.+|..+..+.
T Consensus       129 ~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~  164 (520)
T 2z7x_B          129 K---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN  164 (520)
T ss_dssp             G---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred             h---hhccccccceeeEEEeecccccccccccccccccc
Confidence            3   345566777  9999999999  888888776654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.43  E-value=5.9e-13  Score=115.96  Aligned_cols=108  Identities=18%  Similarity=0.182  Sum_probs=78.1

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..+..|.++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+.++++|++|++++|.+. ..
T Consensus        42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~  119 (477)
T 2id5_A           42 NRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-IL  119 (477)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC-EE
T ss_pred             CccceECHhHccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc-cC
Confidence            57777767777778888888888887776 55677777788888888888777544445677788888888888775 44


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS  213 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~  213 (221)
                      .+ .+..+++|++|++++|.+++..|..+..
T Consensus       120 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  150 (477)
T 2id5_A          120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSG  150 (477)
T ss_dssp             CTTTTTTCTTCCEEEECCTTCCEECTTSSTT
T ss_pred             ChhHccccccCCEEECCCCccceeChhhccC
Confidence            44 6667778888888888777766655543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.42  E-value=2.5e-13  Score=121.33  Aligned_cols=133  Identities=18%  Similarity=0.151  Sum_probs=84.2

Q ss_pred             CCCCCCCCcc-----cccce-EEcCCCCcEEEEEcCCCC-CCCCC---CccccCC-CCCCCccccCccccCCCCCcEEeC
Q 027602           57 ASWIGDGDCC-----LWAGV-ICDNVTGHILELNLRNPF-NYYVQ---PDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDL  125 (221)
Q Consensus        57 ~~W~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~-~~l~~---~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L  125 (221)
                      .+|..+.++|     .|.|+ .|..  ++++.++++++. ..++.   ..+..+. +.|.+. .+|   ..+++|++|++
T Consensus        34 ~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~L  107 (571)
T 3cvr_A           34 DKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP---ELPASLEYLDA  107 (571)
T ss_dssp             HHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC---CCCTTCCEEEC
T ss_pred             HHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc---cccCCCCEEEc
Confidence            3455455667     79999 7865  578999998853 11110   1111111 335555 455   34577777777


Q ss_pred             ccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCC
Q 027602          126 SFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       126 ~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g  205 (221)
                      ++|.+++  +|. +..  +|++|++++|.+++ +|.   .+++|++|++++|.++  .+|.  .+++|++|++++|+|++
T Consensus       108 s~N~l~~--ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~--~lp~--~l~~L~~L~Ls~N~L~~  174 (571)
T 3cvr_A          108 CDNRLST--LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT--MLPE--LPTSLEVLSVRNNQLTF  174 (571)
T ss_dssp             CSSCCSC--CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--CCCC--CCTTCCEEECCSSCCSC
T ss_pred             cCCCCCC--cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC--cCCC--cCCCcCEEECCCCCCCC
Confidence            7777773  566 544  77777777777775 555   5677777777777775  2554  46677777777777777


Q ss_pred             CCCc
Q 027602          206 FTDT  209 (221)
Q Consensus       206 ~ip~  209 (221)
                       +|.
T Consensus       175 -lp~  177 (571)
T 3cvr_A          175 -LPE  177 (571)
T ss_dssp             -CCC
T ss_pred             -cch
Confidence             665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.42  E-value=1e-13  Score=129.18  Aligned_cols=96  Identities=19%  Similarity=0.219  Sum_probs=57.4

Q ss_pred             ccCcccc--CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCc-CCC-CCccccCCCC-------CCCEEeCcCC
Q 027602          109 KVNPSLL--DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQ-FGG-VIPHQLGNLS-------SLRYLDLSRN  177 (221)
Q Consensus       109 ~~p~~l~--~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~-l~g-~~p~~l~~l~-------~L~~L~l~~N  177 (221)
                      .+|+.++  ++++|++|++++|.+.+ .+|..+.++++|++|++++|+ ++| .+|..++.++       +|++|++++|
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMT-QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCC-SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCc-cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence            3666665  66777777777776666 666666666666666666666 665 5555443333       5566666665


Q ss_pred             CCCCcCCCc---CCCCCCCCEEEcccCCCCCCCC
Q 027602          178 FLYVVNFGW---LSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       178 ~l~~~~~p~---~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      .++  .+|.   +.++++|++|++++|+++ .||
T Consensus       559 ~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          559 NLE--EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             CCC--BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             cCC--ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            554  3332   555555555555555555 555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.42  E-value=1.5e-12  Score=110.63  Aligned_cols=101  Identities=18%  Similarity=0.118  Sum_probs=70.0

Q ss_pred             ccCc-cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC--
Q 027602          109 KVNP-SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG--  185 (221)
Q Consensus       109 ~~p~-~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p--  185 (221)
                      .+|+ .+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+++..|..++++++|++|++++|.++  .+|  
T Consensus        59 ~l~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~  135 (390)
T 3o6n_A           59 KLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRG  135 (390)
T ss_dssp             EECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTT
T ss_pred             hCChhHhcccccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC--cCCHH
Confidence            3443 35667777777777777774 44456777777777777777777666666777777777777777775  344  


Q ss_pred             cCCCCCCCCEEEcccCCCCCCCCcccc
Q 027602          186 WLSGLSFLEHLDFSTTRKMGFTDTKLV  212 (221)
Q Consensus       186 ~~~~l~~L~~L~l~~N~l~g~ip~~~~  212 (221)
                      .+..+++|++|++++|++++..|..+.
T Consensus       136 ~~~~l~~L~~L~L~~n~l~~~~~~~~~  162 (390)
T 3o6n_A          136 IFHNTPKLTTLSMSNNNLERIEDDTFQ  162 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCBCCTTTTS
T ss_pred             HhcCCCCCcEEECCCCccCccChhhcc
Confidence            356677777777777777776665443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.41  E-value=7.2e-13  Score=117.88  Aligned_cols=108  Identities=23%  Similarity=0.190  Sum_probs=63.6

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG  157 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g  157 (221)
                      .+++.+++++                |.+.+..|..+.++++|++|++++|.+++ ..|..|..+++|++|++++|+++ 
T Consensus        52 ~~L~~L~Ls~----------------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-  113 (562)
T 3a79_B           52 PRTKALSLSQ----------------NSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQ-  113 (562)
T ss_dssp             TTCCEEECCS----------------SCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCC-
T ss_pred             CCcCEEECCC----------------CCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCC-
Confidence            4677888877                45555555556666666666666666664 44555666666666666666665 


Q ss_pred             CCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCC
Q 027602          158 VIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       158 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g  205 (221)
                      .+|..  .+++|++|++++|+++...+| .+.++++|++|++++|++++
T Consensus       114 ~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          114 NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            44544  556666666666665432333 45556666666666665554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.40  E-value=5.4e-13  Score=100.38  Aligned_cols=108  Identities=25%  Similarity=0.190  Sum_probs=92.3

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG  157 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g  157 (221)
                      ..++.+++++                |.+.+.  ..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++
T Consensus        49 ~~L~~L~l~~----------------n~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~  109 (168)
T 2ell_A           49 VNLEFLSLIN----------------VGLISV--SNLPKLPKLKKLELSENRIFG-GLDMLAEKLPNLTHLNLSGNKLKD  109 (168)
T ss_dssp             GGCCEEEEES----------------SCCCCC--SSCCCCSSCCEEEEESCCCCS-CCCHHHHHCTTCCEEECBSSSCCS
T ss_pred             CCCCEEeCcC----------------CCCCCh--hhhccCCCCCEEECcCCcCch-HHHHHHhhCCCCCEEeccCCccCc
Confidence            4678888887                577765  678999999999999999997 688888889999999999999986


Q ss_pred             CC-ccccCCCCCCCEEeCcCCCCCCcCCC----cCCCCCCCCEEEcccCCCCC
Q 027602          158 VI-PHQLGNLSSLRYLDLSRNFLYVVNFG----WLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       158 ~~-p~~l~~l~~L~~L~l~~N~l~~~~~p----~~~~l~~L~~L~l~~N~l~g  205 (221)
                      .. +..+..+++|++|++++|.++ ...+    .+..+++|++|++++|.+..
T Consensus       110 ~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          110 ISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             SGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             chhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhh
Confidence            32 278899999999999999997 4444    57789999999999998865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.40  E-value=3.3e-12  Score=110.35  Aligned_cols=96  Identities=18%  Similarity=0.289  Sum_probs=75.3

Q ss_pred             cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCC
Q 027602          113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLS  191 (221)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~  191 (221)
                      .+.++++|++|++++|.++  .+|. +..+++|++|++++|.+++..|..+.++++|++|++++|.++ ...+ .+..++
T Consensus       180 ~~~~l~~L~~L~L~~n~l~--~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~  255 (440)
T 3zyj_A          180 AFEGLSNLRYLNLAMCNLR--EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQ  255 (440)
T ss_dssp             TTTTCSSCCEEECTTSCCS--SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCT
T ss_pred             hhhcccccCeecCCCCcCc--cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-EEChhhhcCCC
Confidence            5667778888888888887  4554 677888888888888888777888888888888888888886 3334 677888


Q ss_pred             CCCEEEcccCCCCCCCCcccc
Q 027602          192 FLEHLDFSTTRKMGFTDTKLV  212 (221)
Q Consensus       192 ~L~~L~l~~N~l~g~ip~~~~  212 (221)
                      +|++|++++|++++..+..+.
T Consensus       256 ~L~~L~L~~N~l~~~~~~~~~  276 (440)
T 3zyj_A          256 SLVEINLAHNNLTLLPHDLFT  276 (440)
T ss_dssp             TCCEEECTTSCCCCCCTTTTS
T ss_pred             CCCEEECCCCCCCccChhHhc
Confidence            999999999999876665543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.40  E-value=2.2e-13  Score=112.65  Aligned_cols=90  Identities=14%  Similarity=0.037  Sum_probs=47.2

Q ss_pred             CCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCC--Ccccc--CCCCCCCEEeCcCCCCCCc-CCC--cCCCC
Q 027602          118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV--IPHQL--GNLSSLRYLDLSRNFLYVV-NFG--WLSGL  190 (221)
Q Consensus       118 ~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~--~p~~l--~~l~~L~~L~l~~N~l~~~-~~p--~~~~l  190 (221)
                      ++|++|++++|++++ ..|..+..+++|++|++++|++.+.  +|..+  ..+++|++|++++|+++.. .++  .+..+
T Consensus       149 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l  227 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR  227 (312)
T ss_dssp             TTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence            555555555555554 3334555555555555555555443  22233  5555666666666655310 111  12345


Q ss_pred             CCCCEEEcccCCCCCCCC
Q 027602          191 SFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       191 ~~L~~L~l~~N~l~g~ip  208 (221)
                      ++|++|++++|++++.+|
T Consensus       228 ~~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             CCCSEEECTTSCCCSSCC
T ss_pred             CCCCEEECCCCcCCcccc
Confidence            666677777776666553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.40  E-value=6.2e-13  Score=111.60  Aligned_cols=128  Identities=13%  Similarity=0.129  Sum_probs=96.9

Q ss_pred             CcEEEEEcCCCC------CCCC-CCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccc--cccCCCCCcE
Q 027602           78 GHILELNLRNPF------NYYV-QPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPR--FIGSMGNQKY  147 (221)
Q Consensus        78 ~~v~~l~l~~~~------~~l~-~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~--~~~~l~~L~~  147 (221)
                      .+++.++++++.      ..+. ...+..+. +.|.+.+..+..+.++++|++|++++|.++  .+|.  .+..+++|++
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK--TLGETSLFSHLTKLQI  153 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS--SSCSSCSCTTCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc--ccCchhhhccCCCCcE
Confidence            467888887764      1111 11122111 447777654445899999999999999999  5665  7889999999


Q ss_pred             EEccCCc-CCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCc
Q 027602          148 LNLLGSQ-FGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDT  209 (221)
Q Consensus       148 L~l~~N~-l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~  209 (221)
                      |++++|. +.+..|..+.++++|++|++++|.++ +..| .+..+++|++|++++|.++. +|.
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~-~~~  215 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHIL-LLE  215 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EECTTTTTTCSEEEEEEEECSCSTT-HHH
T ss_pred             EECCCCccccccCHHHccCCCCCCEEECCCCCcC-ccCHHHHhccccCCeecCCCCcccc-chh
Confidence            9999994 66555678899999999999999997 5545 78889999999999999854 443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.39  E-value=1.2e-12  Score=118.72  Aligned_cols=109  Identities=19%  Similarity=0.074  Sum_probs=74.0

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..+..|.++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..++++++|++|++++|.++ +.
T Consensus        83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~  160 (680)
T 1ziw_A           83 NELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-AL  160 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CB
T ss_pred             CccCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-cc
Confidence            56664444457777777777777777775 44456777777777777777777766667777777777777777775 33


Q ss_pred             CC-cC--CCCCCCCEEEcccCCCCCCCCcccccc
Q 027602          184 FG-WL--SGLSFLEHLDFSTTRKMGFTDTKLVSV  214 (221)
Q Consensus       184 ~p-~~--~~l~~L~~L~l~~N~l~g~ip~~~~~~  214 (221)
                      .+ .+  ..+++|++|++++|++++..|..+..+
T Consensus       161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  194 (680)
T 1ziw_A          161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI  194 (680)
T ss_dssp             CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGS
T ss_pred             CHHHhhccccccccEEECCCCcccccChhhhhhh
Confidence            33 22  345677777777777777776655443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.38  E-value=5.1e-12  Score=109.54  Aligned_cols=96  Identities=20%  Similarity=0.300  Sum_probs=75.8

Q ss_pred             cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCC
Q 027602          113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLS  191 (221)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~  191 (221)
                      .+.++++|++|++++|.+++  +| .+..+++|++|++++|.+++..|..+.++++|++|++++|.++ ...+ .+..++
T Consensus       191 ~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~  266 (452)
T 3zyi_A          191 AFEGLFNLKYLNLGMCNIKD--MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLA  266 (452)
T ss_dssp             TTTTCTTCCEEECTTSCCSS--CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCT
T ss_pred             hccCCCCCCEEECCCCcccc--cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc-eECHHHhcCCC
Confidence            46677788888888888873  44 4677888888888888888877888888899999999999886 4434 677888


Q ss_pred             CCCEEEcccCCCCCCCCcccc
Q 027602          192 FLEHLDFSTTRKMGFTDTKLV  212 (221)
Q Consensus       192 ~L~~L~l~~N~l~g~ip~~~~  212 (221)
                      +|++|++++|++++..+..+.
T Consensus       267 ~L~~L~L~~N~l~~~~~~~~~  287 (452)
T 3zyi_A          267 SLVELNLAHNNLSSLPHDLFT  287 (452)
T ss_dssp             TCCEEECCSSCCSCCCTTSST
T ss_pred             CCCEEECCCCcCCccChHHhc
Confidence            999999999999876665543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.38  E-value=2.6e-12  Score=114.26  Aligned_cols=112  Identities=22%  Similarity=0.142  Sum_probs=96.6

Q ss_pred             EEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCc
Q 027602           81 LELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIP  160 (221)
Q Consensus        81 ~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p  160 (221)
                      +.+++++                |++++ +|..+.  ++|++|++++|.+++ ..|..+..+++|++|++++|++++..|
T Consensus        34 ~~l~ls~----------------~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~   93 (562)
T 3a79_B           34 SMVDYSN----------------RNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDF   93 (562)
T ss_dssp             CEEECTT----------------SCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECT
T ss_pred             cEEEcCC----------------CCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCH
Confidence            7788888                47775 777654  899999999999997 666789999999999999999998888


Q ss_pred             cccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCC-CCCccccccc
Q 027602          161 HQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMG-FTDTKLVSVI  215 (221)
Q Consensus       161 ~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~~  215 (221)
                      ..+.++++|++|++++|+++  .+|.. .+++|++|++++|++++ ++|..+..+.
T Consensus        94 ~~~~~l~~L~~L~Ls~N~l~--~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~  146 (562)
T 3a79_B           94 HVFLFNQDLEYLDVSHNRLQ--NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLT  146 (562)
T ss_dssp             TTTTTCTTCCEEECTTSCCC--EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred             HHhCCCCCCCEEECCCCcCC--ccCcc-ccccCCEEECCCCCccccCchHhhcccC
Confidence            89999999999999999996  56744 89999999999999998 6777765544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.38  E-value=7.3e-13  Score=109.53  Aligned_cols=105  Identities=22%  Similarity=0.054  Sum_probs=68.2

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCc--ccccc--cCCCCCcEEEccCCcCCC--CCcc-ccCCCCCCCEEeCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQ--IPRFI--GSMGNQKYLNLLGSQFGG--VIPH-QLGNLSSLRYLDLSR  176 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~--ip~~~--~~l~~L~~L~l~~N~l~g--~~p~-~l~~l~~L~~L~l~~  176 (221)
                      |.+.+..|..+.++++|++|++++|++.+ .  +|..+  ..+++|++|++++|++++  .++. .+..+++|++|++++
T Consensus       159 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~  237 (312)
T 1wwl_A          159 AHSLNFSCEQVRVFPALSTLDLSDNPELG-ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH  237 (312)
T ss_dssp             CSCCCCCTTTCCCCSSCCEEECCSCTTCH-HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred             CCCccchHHHhccCCCCCEEECCCCCcCc-chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence            66776666777777888888888877765 4  23344  667777777777777762  2222 224567777777777


Q ss_pred             CCCCCcCC--CcCCCCCCCCEEEcccCCCCCCCCccc
Q 027602          177 NFLYVVNF--GWLSGLSFLEHLDFSTTRKMGFTDTKL  211 (221)
Q Consensus       177 N~l~~~~~--p~~~~l~~L~~L~l~~N~l~g~ip~~~  211 (221)
                      |+++ +.+  +.+..+++|++|++++|+++ .+|..+
T Consensus       238 N~l~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~  272 (312)
T 1wwl_A          238 NSLR-DAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL  272 (312)
T ss_dssp             SCCC-SSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred             CcCC-cccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence            7775 333  24455677777777777777 566544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.36  E-value=4.4e-13  Score=98.92  Aligned_cols=103  Identities=25%  Similarity=0.174  Sum_probs=87.7

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG  157 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g  157 (221)
                      .+++.+++++                |.+.+.  ..+.++++|++|++++|.+++ .+|..+..+++|++|++++|.+++
T Consensus        42 ~~L~~L~l~~----------------n~l~~~--~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~ls~N~i~~  102 (149)
T 2je0_A           42 EELEFLSTIN----------------VGLTSI--ANLPKLNKLKKLELSDNRVSG-GLEVLAEKCPNLTHLNLSGNKIKD  102 (149)
T ss_dssp             TTCCEEECTT----------------SCCCCC--TTCCCCTTCCEEECCSSCCCS-CTHHHHHHCTTCCEEECTTSCCCS
T ss_pred             CCCcEEECcC----------------CCCCCc--hhhhcCCCCCEEECCCCcccc-hHHHHhhhCCCCCEEECCCCcCCC
Confidence            4688888887                577766  678999999999999999997 688888889999999999999986


Q ss_pred             C-CccccCCCCCCCEEeCcCCCCCCcCCC----cCCCCCCCCEEEccc
Q 027602          158 V-IPHQLGNLSSLRYLDLSRNFLYVVNFG----WLSGLSFLEHLDFST  200 (221)
Q Consensus       158 ~-~p~~l~~l~~L~~L~l~~N~l~~~~~p----~~~~l~~L~~L~l~~  200 (221)
                      . .|..+..+++|++|++++|.++ +..+    .+..+++|++|++++
T Consensus       103 ~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          103 LSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTBC
T ss_pred             hHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCCC
Confidence            3 3478899999999999999996 4443    467799999999864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.35  E-value=3.3e-12  Score=105.81  Aligned_cols=83  Identities=18%  Similarity=0.188  Sum_probs=38.4

Q ss_pred             CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCC
Q 027602          116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLE  194 (221)
Q Consensus       116 ~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~  194 (221)
                      .+++|++|++++|.+++  +|. ...+++|++|++++|++++ +|..+..+++|++|++++|.++  .+| .+..+++|+
T Consensus       167 ~l~~L~~L~L~~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~  240 (317)
T 3o53_A          167 SSDTLEHLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLE  240 (317)
T ss_dssp             GTTTCCEEECTTSCCCE--EEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCC
T ss_pred             ccCcCCEEECCCCcCcc--ccc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc--chhhHhhcCCCCC
Confidence            34444444444444442  222 1224445555555555542 3333445555555555555553  223 444455555


Q ss_pred             EEEcccCCCC
Q 027602          195 HLDFSTTRKM  204 (221)
Q Consensus       195 ~L~l~~N~l~  204 (221)
                      +|++++|+++
T Consensus       241 ~L~l~~N~~~  250 (317)
T 3o53_A          241 HFDLRGNGFH  250 (317)
T ss_dssp             EEECTTCCCB
T ss_pred             EEEccCCCcc
Confidence            5555555555

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.34  E-value=1.8e-12  Score=98.37  Aligned_cols=108  Identities=19%  Similarity=0.103  Sum_probs=74.5

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCC-CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLE-HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG  156 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~-~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~  156 (221)
                      ..++.+++++                |.+.. +|. +..+. +|++|++++|.+++  + ..+..+++|++|++++|.++
T Consensus        19 ~~L~~L~l~~----------------n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~   77 (176)
T 1a9n_A           19 VRDRELDLRG----------------YKIPV-IEN-LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRIC   77 (176)
T ss_dssp             TSCEEEECTT----------------SCCCS-CCC-GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCC
T ss_pred             CCceEEEeeC----------------CCCch-hHH-hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCccc
Confidence            3578888887                46653 343 44444 78888888888874  4 56777888888888888887


Q ss_pred             CCCccccCCCCCCCEEeCcCCCCCCcCCC---cCCCCCCCCEEEcccCCCCCCCCc
Q 027602          157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFG---WLSGLSFLEHLDFSTTRKMGFTDT  209 (221)
Q Consensus       157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~p---~~~~l~~L~~L~l~~N~l~g~ip~  209 (221)
                      +..|..+..+++|++|++++|.+.  .+|   .+..+++|++|++++|.++. +|.
T Consensus        78 ~~~~~~~~~l~~L~~L~L~~N~i~--~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~  130 (176)
T 1a9n_A           78 RIGEGLDQALPDLTELILTNNSLV--ELGDLDPLASLKSLTYLCILRNPVTN-KKH  130 (176)
T ss_dssp             EECSCHHHHCTTCCEEECCSCCCC--CGGGGGGGGGCTTCCEEECCSSGGGG-STT
T ss_pred             ccCcchhhcCCCCCEEECCCCcCC--cchhhHhhhcCCCCCEEEecCCCCCC-cHh
Confidence            433333477788888888888874  333   46677888888888888763 443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=9.1e-12  Score=94.23  Aligned_cols=90  Identities=21%  Similarity=0.221  Sum_probs=77.7

Q ss_pred             CcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEc
Q 027602          120 LSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDF  198 (221)
Q Consensus       120 L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l  198 (221)
                      .+.+++++|.++  .+|..+.  ++|++|++++|++++..|..+.++++|++|++++|+++ ...+ .+..+++|++|++
T Consensus        11 ~~~l~~s~n~l~--~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSGKSLA--SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTTSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcC--ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence            578999999999  6888764  88999999999999888888999999999999999997 4444 5678999999999


Q ss_pred             ccCCCCCCCCcccccc
Q 027602          199 STTRKMGFTDTKLVSV  214 (221)
Q Consensus       199 ~~N~l~g~ip~~~~~~  214 (221)
                      ++|+|++..|..+..+
T Consensus        86 ~~N~l~~~~~~~~~~l  101 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNL  101 (170)
T ss_dssp             CSSCCCCCCTTTTTTC
T ss_pred             CCCccCEeCHHHhcCC
Confidence            9999998777655443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.33  E-value=2.3e-12  Score=118.23  Aligned_cols=101  Identities=26%  Similarity=0.166  Sum_probs=86.5

Q ss_pred             cCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCC
Q 027602          110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLS  188 (221)
Q Consensus       110 ~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~  188 (221)
                      .|..+..++.|+.|+|++|.+.  .+|..+..+++|++|+|++|.++ .+|..++++++|++|+|++|.++  .+| .+.
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~  290 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT--SLPAELG  290 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS--SCCSSGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC--ccChhhc
Confidence            3667888999999999999999  78988889999999999999999 89999999999999999999996  566 788


Q ss_pred             CCCCCCEEEcccCCCCCCCCcccccccc
Q 027602          189 GLSFLEHLDFSTTRKMGFTDTKLVSVIT  216 (221)
Q Consensus       189 ~l~~L~~L~l~~N~l~g~ip~~~~~~~~  216 (221)
                      .+++|++|+|++|.|+ .||..+..+.+
T Consensus       291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~  317 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT-TLPWEFGNLCN  317 (727)
T ss_dssp             GGTTCSEEECCSSCCC-CCCSSTTSCTT
T ss_pred             CCCCCCEEECCCCCCC-ccChhhhcCCC
Confidence            9999999999999997 78887765543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.32  E-value=9.7e-12  Score=103.28  Aligned_cols=91  Identities=19%  Similarity=0.160  Sum_probs=63.5

Q ss_pred             CCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEE
Q 027602          118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHL  196 (221)
Q Consensus       118 ~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L  196 (221)
                      ++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++  .+| .+..+++|++|
T Consensus       192 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L  268 (330)
T 1xku_A          192 PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVV  268 (330)
T ss_dssp             TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEE
T ss_pred             ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEE
Confidence            455666666666664 44566777777788888887777666666777778888888888774  455 66677788888


Q ss_pred             EcccCCCCCCCCccc
Q 027602          197 DFSTTRKMGFTDTKL  211 (221)
Q Consensus       197 ~l~~N~l~g~ip~~~  211 (221)
                      ++++|++++..+..+
T Consensus       269 ~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          269 YLHNNNISAIGSNDF  283 (330)
T ss_dssp             ECCSSCCCCCCTTSS
T ss_pred             ECCCCcCCccChhhc
Confidence            888888877554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.32  E-value=1e-11  Score=101.78  Aligned_cols=85  Identities=26%  Similarity=0.273  Sum_probs=55.8

Q ss_pred             ccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCC
Q 027602          114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFL  193 (221)
Q Consensus       114 l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L  193 (221)
                      +..+++|++|++++|.+++  + +.+..+++|++|++++|.+++.  ..+..+++|++|++++|.++ . ++.+..+++|
T Consensus       108 l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~-~-~~~l~~l~~L  180 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-D-IVPLAGLTKL  180 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-C-CGGGTTCTTC
T ss_pred             hccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc-c-chhhcCCCcc
Confidence            6666677777777776663  3 3456667777777777776643  45666777777777777764 2 3336667777


Q ss_pred             CEEEcccCCCCC
Q 027602          194 EHLDFSTTRKMG  205 (221)
Q Consensus       194 ~~L~l~~N~l~g  205 (221)
                      ++|++++|.+++
T Consensus       181 ~~L~L~~N~i~~  192 (291)
T 1h6t_A          181 QNLYLSKNHISD  192 (291)
T ss_dssp             CEEECCSSCCCB
T ss_pred             CEEECCCCcCCC
Confidence            777777777765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=1.5e-11  Score=93.40  Aligned_cols=90  Identities=17%  Similarity=0.163  Sum_probs=76.7

Q ss_pred             CcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEc
Q 027602          120 LSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDF  198 (221)
Q Consensus       120 L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l  198 (221)
                      -+.+++++|.++  .+|..+.  ++|++|++++|++++..|..+.++++|++|++++|+++ +..+ .+..+++|++|++
T Consensus        14 ~~~l~~~~n~l~--~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           14 QTLVNCQNIRLA--SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SSEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CcEEEeCCCCCC--ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEEC
Confidence            368999999998  7898775  89999999999999888889999999999999999997 4333 4678999999999


Q ss_pred             ccCCCCCCCCcccccc
Q 027602          199 STTRKMGFTDTKLVSV  214 (221)
Q Consensus       199 ~~N~l~g~ip~~~~~~  214 (221)
                      ++|+|++..+..+..+
T Consensus        89 ~~N~l~~l~~~~~~~l  104 (174)
T 2r9u_A           89 NDNHLKSIPRGAFDNL  104 (174)
T ss_dssp             CSSCCCCCCTTTTTTC
T ss_pred             CCCccceeCHHHhccc
Confidence            9999998666545443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.31  E-value=2.8e-12  Score=105.87  Aligned_cols=131  Identities=16%  Similarity=0.098  Sum_probs=84.1

Q ss_pred             CcEEEEEcCCCC------CCC-CCCccccCC-CCCCCccc--cC--ccccCCCCCcEEeCccCCCCCCcccc----cccC
Q 027602           78 GHILELNLRNPF------NYY-VQPDQFEAN-PRSMLVGK--VN--PSLLDLEHLSYLDLSFNDFQGVQIPR----FIGS  141 (221)
Q Consensus        78 ~~v~~l~l~~~~------~~l-~~~~~~~~~-~~n~l~g~--~p--~~l~~l~~L~~L~L~~n~l~g~~ip~----~~~~  141 (221)
                      .+++.++++++.      ..+ ....+..+. +.|.+.+.  ++  ..+..+++|++|++++|.++  .+|.    .+..
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~~  222 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--TPTGVCAALAAA  222 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--CHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--chHHHHHHHHhc
Confidence            367788887753      000 011111111 33555542  22  22357778888888888887  3444    2466


Q ss_pred             CCCCcEEEccCCcCCCCCccccCCC---CCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCC-CCCcccccc
Q 027602          142 MGNQKYLNLLGSQFGGVIPHQLGNL---SSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMG-FTDTKLVSV  214 (221)
Q Consensus       142 l~~L~~L~l~~N~l~g~~p~~l~~l---~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~  214 (221)
                      +++|++|++++|++++..|+.+..+   ++|++|++++|+++  .+| .+.  ++|++|++++|++++ +++..+..+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L  296 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEV  296 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCchhhhCCCc
Confidence            7888888888888887777777766   68888888888885  455 343  788888888888888 455444333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.31  E-value=3.2e-12  Score=101.54  Aligned_cols=105  Identities=13%  Similarity=0.136  Sum_probs=64.5

Q ss_pred             CCCccccCccccCCCCCcEEeCccCC-CCCCcccccccCCCCCcEEEccC-CcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFND-FQGVQIPRFIGSMGNQKYLNLLG-SQFGGVIPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~-l~g~~ip~~~~~l~~L~~L~l~~-N~l~g~~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                      |++.+..+..+.++++|++|++++|. +++ ..+..+..+++|++|++++ |.+++..+..+.++++|++|++++|.++ 
T Consensus        41 n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-  118 (239)
T 2xwt_C           41 THLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-  118 (239)
T ss_dssp             CCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-
T ss_pred             CcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-
Confidence            46665555566667777777777775 653 2223566667777777776 6666444455666677777777777664 


Q ss_pred             cCCCcCCCCCCCC---EEEcccC-CCCCCCCccc
Q 027602          182 VNFGWLSGLSFLE---HLDFSTT-RKMGFTDTKL  211 (221)
Q Consensus       182 ~~~p~~~~l~~L~---~L~l~~N-~l~g~ip~~~  211 (221)
                       .+|.+..+++|+   +|++++| .+++..+..+
T Consensus       119 -~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~  151 (239)
T 2xwt_C          119 -MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF  151 (239)
T ss_dssp             -SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTT
T ss_pred             -cccccccccccccccEEECCCCcchhhcCcccc
Confidence             255556666666   7777777 6655444333

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.30  E-value=3.1e-12  Score=105.61  Aligned_cols=108  Identities=9%  Similarity=-0.081  Sum_probs=69.2

Q ss_pred             CCCccccC----ccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCC--Cc--cccCCCCCCCEEeCc
Q 027602          104 SMLVGKVN----PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV--IP--HQLGNLSSLRYLDLS  175 (221)
Q Consensus       104 n~l~g~~p----~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~--~p--~~l~~l~~L~~L~l~  175 (221)
                      |.+.+..+    ..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++.+.  ++  ..++.+++|++|+++
T Consensus       127 n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls  205 (310)
T 4glp_A          127 VSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR  205 (310)
T ss_dssp             CCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred             ccccchhhhhHHHHhhhccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence            55555433    223456677777777777765 4556666777777777777776542  22  223566777777777


Q ss_pred             CCCCCCcCCCc-----CCCCCCCCEEEcccCCCCCCCCcccccc
Q 027602          176 RNFLYVVNFGW-----LSGLSFLEHLDFSTTRKMGFTDTKLVSV  214 (221)
Q Consensus       176 ~N~l~~~~~p~-----~~~l~~L~~L~l~~N~l~g~ip~~~~~~  214 (221)
                      +|+++  .++.     +..+++|++|++++|++++.+|..+...
T Consensus       206 ~N~l~--~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  247 (310)
T 4glp_A          206 NTGME--TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC  247 (310)
T ss_dssp             SSCCC--CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred             CCCCC--chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence            77774  2331     3467889999999999998877665443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.29  E-value=2e-11  Score=98.75  Aligned_cols=64  Identities=27%  Similarity=0.324  Sum_probs=29.1

Q ss_pred             ccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCCC
Q 027602          139 IGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       139 ~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g~  206 (221)
                      +..+++|++|++++|++++ +| .+..+++|++|++++|.++  .++.+..+++|++|++++|++++.
T Consensus       124 l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~--~~~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          124 LIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEIT--NTGGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             GTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCC--BCTTSTTCCCCCEEEEEEEEEECC
T ss_pred             hcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCc--chHHhccCCCCCEEeCCCCcccCC
Confidence            4444444444444444443 22 3444444555555554443  113444444555555555554443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.29  E-value=8.3e-12  Score=103.83  Aligned_cols=109  Identities=14%  Similarity=0.118  Sum_probs=81.8

Q ss_pred             CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602          102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                      +.|.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.
T Consensus       201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence            3467777777788888889999999998886 55567888888999999998887 788888888889999999888862


Q ss_pred             cCCCcCCC------CCCCCEEEcccCCCC--CCCCcccc
Q 027602          182 VNFGWLSG------LSFLEHLDFSTTRKM--GFTDTKLV  212 (221)
Q Consensus       182 ~~~p~~~~------l~~L~~L~l~~N~l~--g~ip~~~~  212 (221)
                      .....+..      ..+|+.+++++|.+.  +..|..+.
T Consensus       279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~  317 (332)
T 2ft3_A          279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR  317 (332)
T ss_dssp             CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred             cChhHccccccccccccccceEeecCcccccccCccccc
Confidence            22223433      356888899988887  44444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.29  E-value=4.3e-12  Score=105.09  Aligned_cols=115  Identities=17%  Similarity=0.057  Sum_probs=94.7

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccc-cCCCCCcEEEccCCcCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFI-GSMGNQKYLNLLGSQFG  156 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~-~~l~~L~~L~l~~N~l~  156 (221)
                      ..++.+++++                |.+.+..+..+..+++|++|++++|.+++ ..|..+ ..+++|++|++++|.++
T Consensus       120 ~~L~~L~l~~----------------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          120 QGKKNIYLAN----------------NKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             SSCEEEECCS----------------SCCCSGGGBCTGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCEEECCC----------------CCCCCccchhhhccCCCCEEECCCCCCCc-ccHHHHhhccCcCCEEECCCCcCc
Confidence            3567777776                68888888889999999999999999997 556665 47899999999999998


Q ss_pred             CCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602          157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFTDTKLVS  213 (221)
Q Consensus       157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g~ip~~~~~  213 (221)
                      +. | ....+++|++|++++|+++ +..+.+..+++|++|++++|++++ +|..+..
T Consensus       183 ~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~  235 (317)
T 3o53_A          183 DV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRF  235 (317)
T ss_dssp             EE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred             cc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccc-hhhHhhc
Confidence            54 4 3446899999999999997 444578889999999999999994 7765533

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.29  E-value=4.4e-12  Score=111.29  Aligned_cols=141  Identities=15%  Similarity=0.070  Sum_probs=106.7

Q ss_pred             ccccceEEcCCCCcEEEEEcCCCC-CCCC------CCccccC-CCCCCCccccCcccc-CCCCCcEEeCccCCCCCCccc
Q 027602           66 CLWAGVICDNVTGHILELNLRNPF-NYYV------QPDQFEA-NPRSMLVGKVNPSLL-DLEHLSYLDLSFNDFQGVQIP  136 (221)
Q Consensus        66 c~w~gv~c~~~~~~v~~l~l~~~~-~~l~------~~~~~~~-~~~n~l~g~~p~~l~-~l~~L~~L~L~~n~l~g~~ip  136 (221)
                      |.+.++.|.. -..++.++++++. ..+.      ...+..+ .+.|.+.+..|..+. .+++|+.|++++|.+++  +|
T Consensus       109 N~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~--~~  185 (487)
T 3oja_A          109 NNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VK  185 (487)
T ss_dssp             SCCCCEEECC-CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--EE
T ss_pred             CcCCCCCccc-cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc--cc
Confidence            4556666654 3578889988764 1110      1111112 255899998888886 79999999999999995  44


Q ss_pred             ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCC-CCCCcccc
Q 027602          137 RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKM-GFTDTKLV  212 (221)
Q Consensus       137 ~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~-g~ip~~~~  212 (221)
                      . ...+++|++|++++|.+++ +|+.+..+++|++|++++|.++ +.++.+..+++|++|++++|.++ +.+|..+.
T Consensus       186 ~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          186 G-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             C-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             c-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            4 4469999999999999996 5556899999999999999997 43337888999999999999998 66665443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.27  E-value=4.1e-12  Score=96.42  Aligned_cols=103  Identities=18%  Similarity=0.168  Sum_probs=87.7

Q ss_pred             cEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCccccc-ccCCCCCcEEEccCCcCCC
Q 027602           79 HILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRF-IGSMGNQKYLNLLGSQFGG  157 (221)
Q Consensus        79 ~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~-~~~l~~L~~L~l~~N~l~g  157 (221)
                      .++.+++++                |.+.+.  +.+..+++|++|++++|.+++  +|+. +..+++|++|++++|.++ 
T Consensus        43 ~L~~L~Ls~----------------N~l~~~--~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~-  101 (176)
T 1a9n_A           43 QFDAIDFSD----------------NEIRKL--DGFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNSLV-  101 (176)
T ss_dssp             CCSEEECCS----------------SCCCEE--CCCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEECCSCCCC-
T ss_pred             CCCEEECCC----------------CCCCcc--cccccCCCCCEEECCCCcccc--cCcchhhcCCCCCEEECCCCcCC-
Confidence            678888887                588775  678999999999999999994  5654 488999999999999996 


Q ss_pred             CCcc--ccCCCCCCCEEeCcCCCCCCcCCC-c----CCCCCCCCEEEcccCCCC
Q 027602          158 VIPH--QLGNLSSLRYLDLSRNFLYVVNFG-W----LSGLSFLEHLDFSTTRKM  204 (221)
Q Consensus       158 ~~p~--~l~~l~~L~~L~l~~N~l~~~~~p-~----~~~l~~L~~L~l~~N~l~  204 (221)
                      .+|.  .+..+++|++|++++|.++  .+| .    +..+++|++|++++|.+.
T Consensus       102 ~~~~~~~l~~l~~L~~L~l~~N~i~--~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          102 ELGDLDPLASLKSLTYLCILRNPVT--NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CGGGGGGGGGCTTCCEEECCSSGGG--GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cchhhHhhhcCCCCCEEEecCCCCC--CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            5776  7889999999999999995  445 3    778999999999999764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.26  E-value=4e-11  Score=98.99  Aligned_cols=96  Identities=20%  Similarity=0.291  Sum_probs=66.5

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+.  +.+..+++|++|++++|.+++  ++. +..+++|++|++++|.+++. +. +..+++|++|++++|.++  .
T Consensus        95 n~l~~~--~~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~--~  165 (308)
T 1h6u_A           95 NPLKNV--SAIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVS--D  165 (308)
T ss_dssp             CCCSCC--GGGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC--C
T ss_pred             CcCCCc--hhhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCC--C
Confidence            455442  246777777777777777774  443 67777778888877777643 32 677778888888888775  3


Q ss_pred             CCcCCCCCCCCEEEcccCCCCCCCC
Q 027602          184 FGWLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       184 ~p~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      ++.+..+++|++|++++|++++..+
T Consensus       166 ~~~l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          166 LTPLANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             ChhhcCCCCCCEEECCCCccCcChh
Confidence            4447777888888888888876443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.25  E-value=2.1e-11  Score=108.93  Aligned_cols=92  Identities=23%  Similarity=0.234  Sum_probs=82.9

Q ss_pred             CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEc
Q 027602          119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDF  198 (221)
Q Consensus       119 ~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l  198 (221)
                      .|+.|++++|.++  .+|. ++.+++|++|++++|.++ .+|..++.+++|++|++++|.++  .+|.+..+++|++|++
T Consensus       442 ~L~~L~Ls~n~l~--~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLT--VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVDGVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCS--SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC--CCGGGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCC--CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC--CCcccCCCCCCcEEEC
Confidence            5788999999999  5787 999999999999999999 89999999999999999999997  3778999999999999


Q ss_pred             ccCCCCCCC-Ccccccccc
Q 027602          199 STTRKMGFT-DTKLVSVIT  216 (221)
Q Consensus       199 ~~N~l~g~i-p~~~~~~~~  216 (221)
                      ++|+|++.+ |..+..+.+
T Consensus       516 s~N~l~~~~~p~~l~~l~~  534 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPR  534 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTT
T ss_pred             CCCCCCCCCCcHHHhcCCC
Confidence            999999987 887765543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.25  E-value=5.8e-11  Score=97.29  Aligned_cols=96  Identities=23%  Similarity=0.272  Sum_probs=80.9

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..+  +..+++|++|++++|.+++  +|. +..+++|++|++++|++++ + +.+..+++|++|++++|.++  .
T Consensus        78 n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~--~  148 (291)
T 1h6t_A           78 NKLTDIKP--LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT--D  148 (291)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC--C
T ss_pred             CccCCCcc--cccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC--c
Confidence            67776544  8899999999999999984  444 8889999999999999985 3 46888999999999999996  4


Q ss_pred             CCcCCCCCCCCEEEcccCCCCCCCC
Q 027602          184 FGWLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       184 ~p~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      ++.+..+++|++|++++|++++..|
T Consensus       149 ~~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          149 ITVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             chhhccCCCCCEEEccCCccccchh
Confidence            5778889999999999999998655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.25  E-value=3.9e-11  Score=99.05  Aligned_cols=121  Identities=21%  Similarity=0.279  Sum_probs=74.2

Q ss_pred             CcEEEEEcCCCC-CCCC----CCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEcc
Q 027602           78 GHILELNLRNPF-NYYV----QPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLL  151 (221)
Q Consensus        78 ~~v~~l~l~~~~-~~l~----~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~  151 (221)
                      .+++.++++++. ..+.    ...+..+. +.|.+.+. +. +..+++|++|++++|.+++  ++. +..+++|++|+++
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~  159 (308)
T 1h6u_A           85 TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIG  159 (308)
T ss_dssp             CSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECC
T ss_pred             CCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEcc
Confidence            467777777654 1110    01111111 33566543 32 6777778888888887774  443 6677777777777


Q ss_pred             CCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCCCC
Q 027602          152 GSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFT  207 (221)
Q Consensus       152 ~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g~i  207 (221)
                      +|.+++ ++. +..+++|++|++++|.++  .++.+..+++|++|++++|++++..
T Consensus       160 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~--~~~~l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          160 NAQVSD-LTP-LANLSKLTTLKADDNKIS--DISPLASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             SSCCCC-CGG-GTTCTTCCEEECCSSCCC--CCGGGGGCTTCCEEECTTSCCCBCG
T ss_pred             CCcCCC-Chh-hcCCCCCCEEECCCCccC--cChhhcCCCCCCEEEccCCccCccc
Confidence            777764 333 677777777777777774  3444666777777777777776644

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.24  E-value=4.1e-11  Score=107.78  Aligned_cols=119  Identities=21%  Similarity=0.174  Sum_probs=77.8

Q ss_pred             CcEEEEEcCCCC-CCCC----CCccccC-CCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEcc
Q 027602           78 GHILELNLRNPF-NYYV----QPDQFEA-NPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLL  151 (221)
Q Consensus        78 ~~v~~l~l~~~~-~~l~----~~~~~~~-~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~  151 (221)
                      .+++.|+|+++. ..+.    ...+..+ .+.|.+.+ +| .+..+++|+.|+|++|.+++  + +.+..+++|+.|+|+
T Consensus        65 ~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls  139 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLG  139 (605)
T ss_dssp             TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEECC
T ss_pred             CCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEECC
Confidence            467888887753 1110    0011111 13355554 23 57777788888888888774  3 346777888888888


Q ss_pred             CCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCC
Q 027602          152 GSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       152 ~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g  205 (221)
                      +|.+++.  ..+..+++|+.|+|++|.+. +..| +..+++|++|+|++|+|++
T Consensus       140 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          140 NNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             SSCCCCC--GGGGSCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCB
T ss_pred             CCccCCc--hhhcccCCCCEEECcCCcCC-Cchh-hccCCCCCEEECcCCCCCC
Confidence            8887754  56777888888888888875 3334 7778888888888888876

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.23  E-value=6.2e-11  Score=95.78  Aligned_cols=93  Identities=24%  Similarity=0.191  Sum_probs=72.0

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..+  +..+++|++|++++|++++  +|... . ++|++|++++|++++ ++ .+..+++|++|++++|+++  .
T Consensus        73 N~i~~~~~--l~~l~~L~~L~L~~N~l~~--l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~--~  142 (263)
T 1xeu_A           73 NQISDLSP--LKDLTKLEELSVNRNRLKN--LNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK--S  142 (263)
T ss_dssp             SCCCCCGG--GTTCSSCCEEECCSSCCSC--CTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC--B
T ss_pred             CccCCChh--hccCCCCCEEECCCCccCC--cCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC--C
Confidence            56665444  7888888888888888884  55433 3 788888888888875 33 5888889999999999885  4


Q ss_pred             CCcCCCCCCCCEEEcccCCCCCC
Q 027602          184 FGWLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       184 ~p~~~~l~~L~~L~l~~N~l~g~  206 (221)
                      ++.+..+++|++|++++|++++.
T Consensus       143 ~~~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          143 IVMLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CGGGGGCTTCCEEECTTSCCCBC
T ss_pred             ChHHccCCCCCEEECCCCcCcch
Confidence            56777888999999999988876

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.22  E-value=5.2e-11  Score=103.54  Aligned_cols=88  Identities=24%  Similarity=0.341  Sum_probs=44.9

Q ss_pred             ccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCC
Q 027602          114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFL  193 (221)
Q Consensus       114 l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L  193 (221)
                      +..+++|+.|++++|.+++  ++. +..+++|++|++++|.+++..|  +..+++|++|++++|+++  .++.+..+++|
T Consensus       283 ~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~--~~~~l~~l~~L  355 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS--DVSSLANLTNI  355 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC--CCGGGTTCTTC
T ss_pred             ccCCCccCeEEcCCCcccC--chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC--CchhhccCCCC
Confidence            4555555555555555553  222 4455555555555555554333  444555555555555553  22444445555


Q ss_pred             CEEEcccCCCCCCCC
Q 027602          194 EHLDFSTTRKMGFTD  208 (221)
Q Consensus       194 ~~L~l~~N~l~g~ip  208 (221)
                      ++|++++|+++|.+|
T Consensus       356 ~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          356 NWLSAGHNQISDLTP  370 (466)
T ss_dssp             CEEECCSSCCCBCGG
T ss_pred             CEEeCCCCccCccch
Confidence            555555555555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.21  E-value=1.5e-11  Score=109.83  Aligned_cols=89  Identities=10%  Similarity=0.077  Sum_probs=57.1

Q ss_pred             CCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCC-------CEEeCcCCCCCCcCCC-cCC
Q 027602          117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSL-------RYLDLSRNFLYVVNFG-WLS  188 (221)
Q Consensus       117 l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L-------~~L~l~~N~l~~~~~p-~~~  188 (221)
                      +++|++|++++|.++  .+|. +.  ++|++|++++|.++ .+|. +..  +|       ++|++++|.++  .+| .+.
T Consensus       159 l~~L~~L~Ls~N~L~--~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~--~lp~~l~  227 (571)
T 3cvr_A          159 PTSLEVLSVRNNQLT--FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT--HIPENIL  227 (571)
T ss_dssp             CTTCCEEECCSSCCS--CCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC--CCCGGGG
T ss_pred             CCCcCEEECCCCCCC--Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce--ecCHHHh
Confidence            455566666666665  3455 43  56666666666666 5555 433  55       77777777775  455 566


Q ss_pred             CCCCCCEEEcccCCCCCCCCcccccccc
Q 027602          189 GLSFLEHLDFSTTRKMGFTDTKLVSVIT  216 (221)
Q Consensus       189 ~l~~L~~L~l~~N~l~g~ip~~~~~~~~  216 (221)
                      .+++|++|++++|+++|.+|..+..+..
T Consensus       228 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          228 SLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             GSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            6888888888888888888777666544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.21  E-value=4.6e-13  Score=111.26  Aligned_cols=100  Identities=20%  Similarity=0.159  Sum_probs=60.8

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCc-ccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCC-CCCC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQ-IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRN-FLYV  181 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~-ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N-~l~~  181 (221)
                      |.+.+..+. +..+++|++|++++|.+++ . +|..+..+++|++|++++|.+++..|..++.+++|++|++++| .++.
T Consensus        80 n~l~~~~~~-~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~  157 (336)
T 2ast_B           80 SFMDQPLAE-HFSPFRVQHMDLSNSVIEV-STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE  157 (336)
T ss_dssp             CEECSCCCS-CCCCBCCCEEECTTCEECH-HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred             ccccccchh-hccCCCCCEEEccCCCcCH-HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH
Confidence            444444443 4456667777777766664 3 5666666667777777777666666666666666777777666 4542


Q ss_pred             cCCC-cCCCCCCCCEEEcccC-CCCC
Q 027602          182 VNFG-WLSGLSFLEHLDFSTT-RKMG  205 (221)
Q Consensus       182 ~~~p-~~~~l~~L~~L~l~~N-~l~g  205 (221)
                      ..++ .+..+++|++|++++| .+++
T Consensus       158 ~~l~~~~~~~~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          158 FALQTLLSSCSRLDELNLSWCFDFTE  183 (336)
T ss_dssp             HHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred             HHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence            1234 3445666666666666 6654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.20  E-value=5.7e-11  Score=106.86  Aligned_cols=120  Identities=21%  Similarity=0.245  Sum_probs=94.1

Q ss_pred             CcEEEEEcCCCC-CCCC----CCccccC-CCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEcc
Q 027602           78 GHILELNLRNPF-NYYV----QPDQFEA-NPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLL  151 (221)
Q Consensus        78 ~~v~~l~l~~~~-~~l~----~~~~~~~-~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~  151 (221)
                      .+++.|+|+++. ..+.    ...+..+ .+.|.+.+ + +.+..+++|+.|+|++|.+++  + ..+..+++|+.|+|+
T Consensus        87 ~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls  161 (605)
T 1m9s_A           87 KNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLE  161 (605)
T ss_dssp             TTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC--C-GGGGSCTTCSEEECC
T ss_pred             CCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC--c-hhhcccCCCCEEECc
Confidence            467788887764 1111    1111111 13467765 3 458899999999999999996  4 668899999999999


Q ss_pred             CCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCCC
Q 027602          152 GSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       152 ~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g~  206 (221)
                      +|.+++..|  +..+++|+.|+|++|.++  .++.+..+++|+.|++++|++++.
T Consensus       162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~--~l~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          162 DNQISDIVP--LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCC--BCGGGTTCTTCSEEECCSEEEECC
T ss_pred             CCcCCCchh--hccCCCCCEEECcCCCCC--CChHHccCCCCCEEEccCCcCcCC
Confidence            999997655  899999999999999996  467889999999999999999886

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.20  E-value=4.8e-11  Score=103.78  Aligned_cols=95  Identities=21%  Similarity=0.329  Sum_probs=82.1

Q ss_pred             CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602          102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                      +.|.+.+..+  +..+++|+.|++++|.+++ ..|  +..+++|++|++++|.+++.  +.+..+++|++|++++|+++ 
T Consensus       295 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-  366 (466)
T 1o6v_A          295 NENQLEDISP--ISNLKNLTYLTLYFNNISD-ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS-  366 (466)
T ss_dssp             CSSCCSCCGG--GGGCTTCSEEECCSSCCSC-CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-
T ss_pred             CCCcccCchh--hcCCCCCCEEECcCCcCCC-chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC-
Confidence            3467776544  7899999999999999997 444  78899999999999999864  47899999999999999997 


Q ss_pred             cCCCcCCCCCCCCEEEcccCCCCC
Q 027602          182 VNFGWLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       182 ~~~p~~~~l~~L~~L~l~~N~l~g  205 (221)
                      +.+| +..+++|++|++++|++++
T Consensus       367 ~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          367 DLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             BCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             ccch-hhcCCCCCEEeccCCcccC
Confidence            5555 8889999999999999998

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.19  E-value=8e-11  Score=98.14  Aligned_cols=97  Identities=26%  Similarity=0.285  Sum_probs=74.8

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..+  +..+++|++|++++|.+++  + +.+..+++|++|++++|.+++ + +.+..+++|++|++++|.++ ..
T Consensus       231 n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~-~~  302 (347)
T 4fmz_A          231 NKITDLSP--LANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLG-NE  302 (347)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC-GG
T ss_pred             CccCCCcc--hhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCC-Cc
Confidence            56654433  7788888888888888884  4 457788888888888888875 3 35778888889999888886 44


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      .+ .+..+++|++|++++|++++..|
T Consensus       303 ~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          303 DMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             GHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             ChhHhhccccCCEEEccCCccccccC
Confidence            44 67778889999999999888766

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.18  E-value=1.6e-10  Score=100.58  Aligned_cols=84  Identities=23%  Similarity=0.300  Sum_probs=42.9

Q ss_pred             ccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCC
Q 027602          114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFL  193 (221)
Q Consensus       114 l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L  193 (221)
                      +..+++|++|++++|.+++  +|  ++.+++|++|++++|++++ +|  ++.+++|++|++++|++++  ++ +..+++|
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~--l~-l~~l~~L  150 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE--ID-VSHNTQL  150 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC--CC-CTTCTTC
T ss_pred             cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce--ec-cccCCcC
Confidence            4455555555555555553  22  4455555555555555553 22  4555555555555555541  22 4445555


Q ss_pred             CEEEcccCCCCCCC
Q 027602          194 EHLDFSTTRKMGFT  207 (221)
Q Consensus       194 ~~L~l~~N~l~g~i  207 (221)
                      ++|++++|+..|.+
T Consensus       151 ~~L~l~~n~~~~~~  164 (457)
T 3bz5_A          151 TELDCHLNKKITKL  164 (457)
T ss_dssp             CEEECTTCSCCCCC
T ss_pred             CEEECCCCCccccc
Confidence            55555555544444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.17  E-value=1.1e-10  Score=97.32  Aligned_cols=101  Identities=15%  Similarity=0.249  Sum_probs=82.8

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..+  +..+++|++|++++|.+++  ++. +..+++|++|++++|.+++ + +.+..+++|++|++++|.++  .
T Consensus       209 n~l~~~~~--~~~~~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~--~  279 (347)
T 4fmz_A          209 NQITDITP--VANMTRLNSLKIGNNKITD--LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQIS--D  279 (347)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC--C
T ss_pred             CCCCCCch--hhcCCcCCEEEccCCccCC--Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccC--C
Confidence            55554433  7888999999999999984  555 8889999999999999885 3 46888999999999999985  4


Q ss_pred             CCcCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602          184 FGWLSGLSFLEHLDFSTTRKMGFTDTKLVS  213 (221)
Q Consensus       184 ~p~~~~l~~L~~L~l~~N~l~g~ip~~~~~  213 (221)
                      ++.+..+++|++|++++|++++..|..+..
T Consensus       280 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  309 (347)
T 4fmz_A          280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG  309 (347)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred             ChhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence            577888999999999999999887765543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.17  E-value=7.8e-11  Score=98.45  Aligned_cols=87  Identities=15%  Similarity=0.087  Sum_probs=75.8

Q ss_pred             cEEeCccC-CCCCCcccccccCCCCCcEEEccC-CcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEE
Q 027602          121 SYLDLSFN-DFQGVQIPRFIGSMGNQKYLNLLG-SQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLD  197 (221)
Q Consensus       121 ~~L~L~~n-~l~g~~ip~~~~~l~~L~~L~l~~-N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~  197 (221)
                      ..++.+++ +++  .+|. +..+++|++|+|++ |.+++..|..|.++++|++|+|++|+++ +.+| .|.++++|++|+
T Consensus        11 ~~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           11 SGLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             SCEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEE
T ss_pred             CEEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEe
Confidence            35688888 898  6899 99999999999996 9999877788999999999999999997 5555 788999999999


Q ss_pred             cccCCCCCCCCccc
Q 027602          198 FSTTRKMGFTDTKL  211 (221)
Q Consensus       198 l~~N~l~g~ip~~~  211 (221)
                      |++|+|++..|..+
T Consensus        87 l~~N~l~~~~~~~~  100 (347)
T 2ifg_A           87 LSFNALESLSWKTV  100 (347)
T ss_dssp             CCSSCCSCCCSTTT
T ss_pred             CCCCccceeCHHHc
Confidence            99999998655444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.17  E-value=2.2e-10  Score=99.58  Aligned_cols=94  Identities=19%  Similarity=0.238  Sum_probs=54.4

Q ss_pred             CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC-
Q 027602          103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV-  181 (221)
Q Consensus       103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~-  181 (221)
                      .|.+.+ +| ++.++++|++|++++|++++  +|..+   ++|++|++++|.+++ +| .++++++|++|++++|.+++ 
T Consensus       140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l  210 (454)
T 1jl5_A          140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL  210 (454)
T ss_dssp             SSCCSS-CC-CCTTCTTCCEEECCSSCCSC--CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC
T ss_pred             CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC
Confidence            356665 66 47777777777777777773  45432   355666666666554 44 35555555555555444431 


Q ss_pred             -----------------cCCCcCCCCCCCCEEEcccCCCCC
Q 027602          182 -----------------VNFGWLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       182 -----------------~~~p~~~~l~~L~~L~l~~N~l~g  205 (221)
                                       ..+|.+..+++|++|++++|++++
T Consensus       211 ~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          211 PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             CCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc
Confidence                             134445556666666666666665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.17  E-value=1.8e-11  Score=110.47  Aligned_cols=137  Identities=17%  Similarity=0.084  Sum_probs=88.0

Q ss_pred             CCCCCCCCcccccceE--------EcCCCCcEEEEEcCCCC-CCCCC---CccccCC-CCCCCccccCccccCCCCCcEE
Q 027602           57 ASWIGDGDCCLWAGVI--------CDNVTGHILELNLRNPF-NYYVQ---PDQFEAN-PRSMLVGKVNPSLLDLEHLSYL  123 (221)
Q Consensus        57 ~~W~~~~~~c~w~gv~--------c~~~~~~v~~l~l~~~~-~~l~~---~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L  123 (221)
                      ..|....++|.|+|..        |..  ..++.+++++.. ..++.   ..+..+. +.|++. .+|.   .+++|++|
T Consensus        13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~-~lp~---~l~~L~~L   86 (622)
T 3g06_A           13 SAWRRAAPAEESRGRAAVVQKMRACLN--NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTL   86 (622)
T ss_dssp             HHHHHTCCGGGHHHHHHHHHHHHHHHH--HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCS-CCCC---CCTTCCEE
T ss_pred             HHHHhcCCcchhccccccCcccccccC--CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCC-CCCC---cCCCCCEE
Confidence            4566667889996632        322  357888888753 11100   1111111 335555 4554   46788888


Q ss_pred             eCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCC
Q 027602          124 DLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRK  203 (221)
Q Consensus       124 ~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l  203 (221)
                      ++++|.++  .+|.   .+++|++|++++|.+++ +|.   .+++|++|++++|+++  .+|.  .+++|++|++++|++
T Consensus        87 ~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~--~lp~--~l~~L~~L~Ls~N~l  153 (622)
T 3g06_A           87 EVSGNQLT--SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT--SLPV--LPPGLQELSVSDNQL  153 (622)
T ss_dssp             EECSCCCS--CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS--CCCC--CCTTCCEEECCSSCC
T ss_pred             EcCCCcCC--cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC--cCCC--CCCCCCEEECcCCcC
Confidence            88888887  5666   56788888888888874 554   5678888888888885  3553  247899999999998


Q ss_pred             CCCCCccccc
Q 027602          204 MGFTDTKLVS  213 (221)
Q Consensus       204 ~g~ip~~~~~  213 (221)
                      ++ +|..+..
T Consensus       154 ~~-l~~~~~~  162 (622)
T 3g06_A          154 AS-LPALPSE  162 (622)
T ss_dssp             SC-CCCCCTT
T ss_pred             CC-cCCccCC
Confidence            87 4443333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.15  E-value=3.5e-10  Score=98.38  Aligned_cols=98  Identities=21%  Similarity=0.221  Sum_probs=71.2

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |...+.+  .+..+++|+.|++++|.+++  +|  +..+++|++|++++|.+++.   .++.+++|++|++++|+++ + 
T Consensus       158 n~~~~~~--~~~~l~~L~~L~ls~n~l~~--l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~-  226 (457)
T 3bz5_A          158 NKKITKL--DVTPQTQLTTLDCSFNKITE--LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-E-  226 (457)
T ss_dssp             CSCCCCC--CCTTCTTCCEEECCSSCCCC--CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS-C-
T ss_pred             CCccccc--ccccCCcCCEEECCCCccce--ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc-c-
Confidence            4444555  36677888888888888884  44  67778888888888888754   3777888888888888886 3 


Q ss_pred             CCcCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602          184 FGWLSGLSFLEHLDFSTTRKMGFTDTKLVS  213 (221)
Q Consensus       184 ~p~~~~l~~L~~L~l~~N~l~g~ip~~~~~  213 (221)
                      +| +..+++|++|++++|+++|..+..+..
T Consensus       227 ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~  255 (457)
T 3bz5_A          227 ID-VTPLTQLTYFDCSVNPLTELDVSTLSK  255 (457)
T ss_dssp             CC-CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred             cC-ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence            55 667788888888888888865544443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.13  E-value=1e-13  Score=107.39  Aligned_cols=100  Identities=21%  Similarity=0.165  Sum_probs=80.5

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+ +| .+..+++|++|++++|.++  .+|..+..+++|++|++++|++++ +| .+..+++|++|++++|.++...
T Consensus        58 n~l~~-l~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~  131 (198)
T 1ds9_A           58 NNIEK-IS-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWG  131 (198)
T ss_dssp             EEESC-CC-CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHH
T ss_pred             CCCcc-cc-ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchh
Confidence            56666 66 7888899999999999988  678777777889999999999885 55 5778889999999999986212


Q ss_pred             C-CcCCCCCCCCEEEcccCCCCCCCCc
Q 027602          184 F-GWLSGLSFLEHLDFSTTRKMGFTDT  209 (221)
Q Consensus       184 ~-p~~~~l~~L~~L~l~~N~l~g~ip~  209 (221)
                      . +.+..+++|++|++++|.+++.+|.
T Consensus       132 ~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          132 EIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             HHHHHhcCCCCCEEEecCCcccccccc
Confidence            1 2577899999999999999887664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.12  E-value=9.7e-14  Score=107.49  Aligned_cols=87  Identities=23%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCC
Q 027602          113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSF  192 (221)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~  192 (221)
                      .+..+++|++|++++|.++  .+| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++  .+|.+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~--~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~--~l~~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIE--KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA--SLSGIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEES--CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC--CHHHHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCc--ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC--cCCccccCCC
Confidence            5566666666666666666  345 5556666666666666665 45555555566666666666664  2445555566


Q ss_pred             CCEEEcccCCCCC
Q 027602          193 LEHLDFSTTRKMG  205 (221)
Q Consensus       193 L~~L~l~~N~l~g  205 (221)
                      |++|++++|++++
T Consensus       117 L~~L~l~~N~i~~  129 (198)
T 1ds9_A          117 LRVLYMSNNKITN  129 (198)
T ss_dssp             SSEEEESEEECCC
T ss_pred             CCEEECCCCcCCc
Confidence            6666666666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.11  E-value=5.6e-10  Score=97.06  Aligned_cols=83  Identities=19%  Similarity=0.261  Sum_probs=67.6

Q ss_pred             CCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEE
Q 027602          118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLD  197 (221)
Q Consensus       118 ~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~  197 (221)
                      ++|++|++++|.++  .+| .++.+++|++|++++|++++ +|..+   .+|++|++++|.++  .+|.+..+++|++|+
T Consensus       131 ~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~--~l~~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLE--ELPELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCS--SCCCCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCC--CCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCC--cCccccCCCCCCEEE
Confidence            68889999999888  467 58889999999999999885 66543   58999999999986  367888899999999


Q ss_pred             cccCCCCCCCCcc
Q 027602          198 FSTTRKMGFTDTK  210 (221)
Q Consensus       198 l~~N~l~g~ip~~  210 (221)
                      +++|++++ +|..
T Consensus       202 l~~N~l~~-l~~~  213 (454)
T 1jl5_A          202 ADNNSLKK-LPDL  213 (454)
T ss_dssp             CCSSCCSS-CCCC
T ss_pred             CCCCcCCc-CCCC
Confidence            99999987 4443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.11  E-value=1.7e-10  Score=96.81  Aligned_cols=98  Identities=17%  Similarity=0.200  Sum_probs=69.8

Q ss_pred             ccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCccc
Q 027602           66 CLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIP  136 (221)
Q Consensus        66 c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip  136 (221)
                      |.|..|.|.+..         ..++.|+|++                |++...-+..|.++++|++|+|++|.+.+ .+|
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~----------------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-~i~   71 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVL----------------TKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIE   71 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEES----------------CCCSEECTTSSTTCTTCCEEEEECCTTCC-EEC
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccC----------------CcCCCcCHHHHcCCCCCCEEECcCCCCCC-ccC
Confidence            678889997421         2456666666                57775444568888888888888888875 565


Q ss_pred             c-cccCCCCCcE-EEccCCcCCCCCccccCCCCCCCEEeCcCCCCC
Q 027602          137 R-FIGSMGNQKY-LNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLY  180 (221)
Q Consensus       137 ~-~~~~l~~L~~-L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~  180 (221)
                      . .|.+++++++ +.+..|+++...|..+..+++|++|++++|++.
T Consensus        72 ~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred             hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccc
Confidence            4 4677777664 555667787666677788888888888888775

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.10  E-value=5.4e-12  Score=104.74  Aligned_cols=49  Identities=22%  Similarity=0.196  Sum_probs=21.2

Q ss_pred             CCccccCccccCCCCCcEEeCccC-CCCCCcccccccCCCCCcEEEccCC
Q 027602          105 MLVGKVNPSLLDLEHLSYLDLSFN-DFQGVQIPRFIGSMGNQKYLNLLGS  153 (221)
Q Consensus       105 ~l~g~~p~~l~~l~~L~~L~L~~n-~l~g~~ip~~~~~l~~L~~L~l~~N  153 (221)
                      .+.+..+..+..+++|++|++++| .+++..++..+..+++|++|++++|
T Consensus       129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            444444444444455555555544 3432013333344444444444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.04  E-value=3.4e-10  Score=102.12  Aligned_cols=87  Identities=23%  Similarity=0.137  Sum_probs=68.1

Q ss_pred             CCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEE
Q 027602          118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHL  196 (221)
Q Consensus       118 ~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L  196 (221)
                      ++|+.|++++|.++  .+|   ..+++|++|++++|.++ .+|.   .+++|++|++++|+++  .+| .+..+++|++|
T Consensus       221 ~~L~~L~Ls~N~L~--~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L  289 (622)
T 3g06_A          221 SGLKELIVSGNRLT--SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT--RLPESLIHLSSETTV  289 (622)
T ss_dssp             TTCCEEECCSSCCS--CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEE
T ss_pred             CCCCEEEccCCccC--cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC--cCCHHHhhccccCEE
Confidence            67888888888887  456   34578888888888887 5665   5678999999999986  555 77888999999


Q ss_pred             EcccCCCCCCCCccccccc
Q 027602          197 DFSTTRKMGFTDTKLVSVI  215 (221)
Q Consensus       197 ~l~~N~l~g~ip~~~~~~~  215 (221)
                      ++++|+++|.+|..+..+.
T Consensus       290 ~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          290 NLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             ECCSCCCCHHHHHHHHHHH
T ss_pred             EecCCCCCCcCHHHHHhcc
Confidence            9999999988877665443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.04  E-value=3e-11  Score=102.51  Aligned_cols=103  Identities=19%  Similarity=0.157  Sum_probs=79.2

Q ss_pred             CCCc--c---ccCccccCCCCCcEEeCccCCCC----CCcccccccCCCCCcEEEccCCcCCCC----Ccccc--CCCCC
Q 027602          104 SMLV--G---KVNPSLLDLEHLSYLDLSFNDFQ----GVQIPRFIGSMGNQKYLNLLGSQFGGV----IPHQL--GNLSS  168 (221)
Q Consensus       104 n~l~--g---~~p~~l~~l~~L~~L~L~~n~l~----g~~ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l--~~l~~  168 (221)
                      |.+.  |   ..|..+..+++|++|++++|.++    + .+|..+..+++|++|++++|.+++.    +|..+  +.+++
T Consensus       197 n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~  275 (386)
T 2ca6_A          197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG  275 (386)
T ss_dssp             SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH-HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred             CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH-HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC
Confidence            5665  2   34447788889999999999885    4 6778888888999999999988765    55666  34888


Q ss_pred             CCEEeCcCCCCCCc----CCC-cC-CCCCCCCEEEcccCCCCCCCC
Q 027602          169 LRYLDLSRNFLYVV----NFG-WL-SGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       169 L~~L~l~~N~l~~~----~~p-~~-~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      |++|++++|.++ .    .+| .+ .++++|++|++++|.+++..|
T Consensus       276 L~~L~L~~n~i~-~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          276 LQTLRLQYNEIE-LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCEEECCSSCCB-HHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             eEEEECcCCcCC-HHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            999999999986 3    255 44 457899999999999988764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.94  E-value=1.4e-10  Score=97.66  Aligned_cols=111  Identities=17%  Similarity=0.102  Sum_probs=77.6

Q ss_pred             cEEEEEcCCCCCCCCCCccccCCCCCCCccccC----ccccCCC-CCcEEeCccCCCCCCcccccccCC-----CCCcEE
Q 027602           79 HILELNLRNPFNYYVQPDQFEANPRSMLVGKVN----PSLLDLE-HLSYLDLSFNDFQGVQIPRFIGSM-----GNQKYL  148 (221)
Q Consensus        79 ~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p----~~l~~l~-~L~~L~L~~n~l~g~~ip~~~~~l-----~~L~~L  148 (221)
                      .++.+++++                |.+.+..+    ..+.+++ +|++|++++|.+++ ..+..+..+     ++|++|
T Consensus        23 ~L~~L~Ls~----------------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L   85 (362)
T 3goz_A           23 GVTSLDLSL----------------NNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPANVTSL   85 (362)
T ss_dssp             TCCEEECTT----------------SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEE
T ss_pred             CceEEEccC----------------CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCCCccEE
Confidence            366777776                56666555    5667777 78888888888886 556555554     788888


Q ss_pred             EccCCcCCCCCccccC----CC-CCCCEEeCcCCCCCCcCCC-c----CCC-CCCCCEEEcccCCCCCCC
Q 027602          149 NLLGSQFGGVIPHQLG----NL-SSLRYLDLSRNFLYVVNFG-W----LSG-LSFLEHLDFSTTRKMGFT  207 (221)
Q Consensus       149 ~l~~N~l~g~~p~~l~----~l-~~L~~L~l~~N~l~~~~~p-~----~~~-l~~L~~L~l~~N~l~g~i  207 (221)
                      ++++|.+++..+..+.    .+ ++|++|++++|.++ ...+ .    +.. .++|++|++++|.+++.-
T Consensus        86 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  154 (362)
T 3goz_A           86 NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKS  154 (362)
T ss_dssp             ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred             ECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence            8888888766665433    33 78888888888885 3322 2    333 358888888888888543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.94  E-value=4.1e-11  Score=101.61  Aligned_cols=89  Identities=15%  Similarity=0.121  Sum_probs=47.8

Q ss_pred             CCCcEEeCccCCCCCCccc---ccccCCCCCcEEEccCCcCC--C---CCccccCCCCCCCEEeCcCCCCCC---cCCC-
Q 027602          118 EHLSYLDLSFNDFQGVQIP---RFIGSMGNQKYLNLLGSQFG--G---VIPHQLGNLSSLRYLDLSRNFLYV---VNFG-  185 (221)
Q Consensus       118 ~~L~~L~L~~n~l~g~~ip---~~~~~l~~L~~L~l~~N~l~--g---~~p~~l~~l~~L~~L~l~~N~l~~---~~~p-  185 (221)
                      ++|++|++++|.++...+|   ..+..+++|++|++++|+++  |   ..|..+..+++|++|++++|.++.   ..+| 
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            5566666666655521333   23445556666666666654  1   122245556666666666666521   1233 


Q ss_pred             cCCCCCCCCEEEcccCCCCCC
Q 027602          186 WLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       186 ~~~~l~~L~~L~l~~N~l~g~  206 (221)
                      .+..+++|++|++++|.+++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHH
T ss_pred             HHccCCCcCEEECCCCCCchh
Confidence            445566666666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.90  E-value=2.6e-09  Score=89.50  Aligned_cols=101  Identities=18%  Similarity=0.146  Sum_probs=80.8

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccc-cccCCCCCcEEEccCCcCCCCCcc-ccCCCCCCCE-EeCcCCCCC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPR-FIGSMGNQKYLNLLGSQFGGVIPH-QLGNLSSLRY-LDLSRNFLY  180 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~-~~~~l~~L~~L~l~~N~l~g~~p~-~l~~l~~L~~-L~l~~N~l~  180 (221)
                      ++++ .+|..+  .+++++|+|++|+++  .+|. .|..+++|++|+|++|++.+.+|. .+.++++++. +.+..|+++
T Consensus        19 ~~Lt-~iP~~l--~~~l~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~   93 (350)
T 4ay9_X           19 SKVT-EIPSDL--PRNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   93 (350)
T ss_dssp             TTCC-SCCTTC--CTTCSEEEEESCCCS--EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred             CCCC-ccCcCc--CCCCCEEEccCCcCC--CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence            3565 567665  368999999999999  6775 689999999999999998777764 5688888775 566778986


Q ss_pred             CcCCC-cCCCCCCCCEEEcccCCCCCCCCcc
Q 027602          181 VVNFG-WLSGLSFLEHLDFSTTRKMGFTDTK  210 (221)
Q Consensus       181 ~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~  210 (221)
                       ...| .+..+++|++|++++|++++..+..
T Consensus        94 -~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~  123 (350)
T 4ay9_X           94 -YINPEAFQNLPNLQYLLISNTGIKHLPDVH  123 (350)
T ss_dssp             -EECTTSBCCCTTCCEEEEEEECCSSCCCCT
T ss_pred             -ccCchhhhhccccccccccccccccCCchh
Confidence             3444 7888999999999999998866543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.89  E-value=1.8e-10  Score=97.01  Aligned_cols=116  Identities=19%  Similarity=0.159  Sum_probs=86.7

Q ss_pred             cEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCC-----CCCcEEeCccCCCCCCccccc----ccCC-CCCcEE
Q 027602           79 HILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDL-----EHLSYLDLSFNDFQGVQIPRF----IGSM-GNQKYL  148 (221)
Q Consensus        79 ~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l-----~~L~~L~L~~n~l~g~~ip~~----~~~l-~~L~~L  148 (221)
                      +++.+++++                |.+.+..+..+..+     ++|++|++++|.+++ ..+..    +..+ ++|++|
T Consensus        52 ~L~~L~Ls~----------------N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L  114 (362)
T 3goz_A           52 SVTSLNLSG----------------NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVL  114 (362)
T ss_dssp             TCCEEECCS----------------SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEE
T ss_pred             ceeEEECcC----------------CCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh-HHHHHHHHHHHhCCCCccEE
Confidence            688888887                58887767666664     899999999999986 55553    3444 899999


Q ss_pred             EccCCcCCCCCcccc----CC-CCCCCEEeCcCCCCCCcCC---C-cCCCCC-CCCEEEcccCCCCCCCCccc
Q 027602          149 NLLGSQFGGVIPHQL----GN-LSSLRYLDLSRNFLYVVNF---G-WLSGLS-FLEHLDFSTTRKMGFTDTKL  211 (221)
Q Consensus       149 ~l~~N~l~g~~p~~l----~~-l~~L~~L~l~~N~l~~~~~---p-~~~~l~-~L~~L~l~~N~l~g~ip~~~  211 (221)
                      ++++|.+++..+..+    .. .++|++|++++|.++....   + .+..++ +|++|++++|++++..+..+
T Consensus       115 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  187 (362)
T 3goz_A          115 DLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL  187 (362)
T ss_dssp             ECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             ECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHH
Confidence            999999987665443    34 3699999999999862221   1 234444 99999999999988776443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.85  E-value=6.3e-11  Score=96.02  Aligned_cols=68  Identities=21%  Similarity=0.160  Sum_probs=43.3

Q ss_pred             cCCCCCcEEEccCCcCCC--CCccccCCCCCCCEEeCcCCCCCCc-CCCcCCCCCCCCEEEcccCCCCCCCC
Q 027602          140 GSMGNQKYLNLLGSQFGG--VIPHQLGNLSSLRYLDLSRNFLYVV-NFGWLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       140 ~~l~~L~~L~l~~N~l~g--~~p~~l~~l~~L~~L~l~~N~l~~~-~~p~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      .++++|+.|+|++|++++  .+|..+..+++|+.|+|++|.+++. .+..+..+ +|++|++++|.+++.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccC
Confidence            346677777777777775  3445555677777777777777522 11223333 77777777777777665

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.73  E-value=1.8e-10  Score=99.49  Aligned_cols=67  Identities=18%  Similarity=0.023  Sum_probs=31.0

Q ss_pred             ccCCCCCcEEEccCCcCCCCCccccCC-----CCCCCEEeCcCCCCCCc---CCC-cCCCCCCCCEEEcccCCCCC
Q 027602          139 IGSMGNQKYLNLLGSQFGGVIPHQLGN-----LSSLRYLDLSRNFLYVV---NFG-WLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       139 ~~~l~~L~~L~l~~N~l~g~~p~~l~~-----l~~L~~L~l~~N~l~~~---~~p-~~~~l~~L~~L~l~~N~l~g  205 (221)
                      +..+++|++|++++|.+++..+..+..     .++|++|++++|.++..   .++ .+..+++|++|++++|++++
T Consensus       337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            334455555555555544332222211     34555555555555310   233 33445555566666655554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.69  E-value=7.3e-10  Score=95.62  Aligned_cols=111  Identities=19%  Similarity=0.095  Sum_probs=63.9

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccc----cCccccCCCCCcEEeCccCCCCCCccccccc-----CCCCCcEE
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGK----VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIG-----SMGNQKYL  148 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~----~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~-----~l~~L~~L  148 (221)
                      .+++.+++++                |.+.+.    ++..+.++++|++|++++|.+++ ..+..+.     ..++|++|
T Consensus       256 ~~L~~L~L~~----------------n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          256 SRLRTLWIWE----------------CGITAKGCGDLCRVLRAKESLKELSLAGNELGD-EGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             CCCCEEECTT----------------SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH-HHHHHHHHHHTSTTCCCCEE
T ss_pred             CCceEEECcC----------------CCCCHHHHHHHHHHHhhCCCcceEECCCCCCch-HHHHHHHHHhccCCccceee
Confidence            4567777776                355543    45555666777777777776654 3222222     12467777


Q ss_pred             EccCCcCCCC----CccccCCCCCCCEEeCcCCCCCCcCCCcCC----C-CCCCCEEEcccCCCCC
Q 027602          149 NLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFLYVVNFGWLS----G-LSFLEHLDFSTTRKMG  205 (221)
Q Consensus       149 ~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~----~-l~~L~~L~l~~N~l~g  205 (221)
                      ++++|.+++.    ++..+..+++|++|++++|.+....+..+.    . .++|++|++++|++++
T Consensus       319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            7777776644    344555566777777777766421122221    1 4567777777777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.51  E-value=2e-08  Score=85.05  Aligned_cols=91  Identities=19%  Similarity=0.104  Sum_probs=64.6

Q ss_pred             CCCCCcEEeCccCCCCCC---cccccccCCCCCcEEEccCCcCCCC----CccccCCCCCCCEEeCcCCCCCCcC---CC
Q 027602          116 DLEHLSYLDLSFNDFQGV---QIPRFIGSMGNQKYLNLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFLYVVN---FG  185 (221)
Q Consensus       116 ~l~~L~~L~L~~n~l~g~---~ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~~~---~p  185 (221)
                      ..++|++|+|++|.++..   .++..+...++|++|+|++|.++..    ++..+...++|++|++++|.++...   +.
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            457788999998888630   1344456778899999999988642    3455667788999999999885221   11


Q ss_pred             -cCCCCCCCCEEEcccCCCCCC
Q 027602          186 -WLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       186 -~~~~l~~L~~L~l~~N~l~g~  206 (221)
                       .+...++|++|++++|.|+..
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHhCCCCCEEeccCCCCCHH
Confidence             234567899999999988754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.42  E-value=1.6e-08  Score=89.89  Aligned_cols=96  Identities=14%  Similarity=0.047  Sum_probs=69.8

Q ss_pred             cCccccCCCCCcEEeCccC--CCCCCccccccc-CCCCCcEEEccCCcCCC-CCccccCCCCCCCEEeCcCCCCCCcCCC
Q 027602          110 VNPSLLDLEHLSYLDLSFN--DFQGVQIPRFIG-SMGNQKYLNLLGSQFGG-VIPHQLGNLSSLRYLDLSRNFLYVVNFG  185 (221)
Q Consensus       110 ~p~~l~~l~~L~~L~L~~n--~l~g~~ip~~~~-~l~~L~~L~l~~N~l~g-~~p~~l~~l~~L~~L~l~~N~l~~~~~p  185 (221)
                      ++..+.++++|+.|+++++  .+++ ..+..+. .+++|++|++++|.+++ .++..+..+++|++|++++|.++...++
T Consensus       428 ~~~~~~~~~~L~~L~L~~~~~~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  506 (592)
T 3ogk_B          428 VRSLLIGCKKLRRFAFYLRQGGLTD-LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA  506 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCGGGCCH-HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred             HHHHHHhCCCCCEEEEecCCCCccH-HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence            3334556778888888643  3555 4444443 47889999999999876 3455567889999999999998633355


Q ss_pred             c-CCCCCCCCEEEcccCCCCCC
Q 027602          186 W-LSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       186 ~-~~~l~~L~~L~l~~N~l~g~  206 (221)
                      . ...+++|++|++++|++++.
T Consensus       507 ~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          507 AAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHhcCccCeeECcCCcCCHH
Confidence            3 45689999999999999876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.38  E-value=2.2e-07  Score=75.17  Aligned_cols=80  Identities=26%  Similarity=0.296  Sum_probs=62.5

Q ss_pred             cCCCCCcEEeCccCCCCCC-cccccccCCCCCcEEEccCCcCCCCCccccCCCC--CCCEEeCcCCCCCCcCCC------
Q 027602          115 LDLEHLSYLDLSFNDFQGV-QIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLS--SLRYLDLSRNFLYVVNFG------  185 (221)
Q Consensus       115 ~~l~~L~~L~L~~n~l~g~-~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~--~L~~L~l~~N~l~~~~~p------  185 (221)
                      .++++|+.|+|++|.+++. .+|..+..+++|+.|+|++|.+++.  ..+..+.  +|+.|++++|.+. +.+|      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~-~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC-DTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG-GGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc-cccCcchhHH
Confidence            4688999999999999962 1335567899999999999999864  3344444  9999999999997 5444      


Q ss_pred             --cCCCCCCCCEEE
Q 027602          186 --WLSGLSFLEHLD  197 (221)
Q Consensus       186 --~~~~l~~L~~L~  197 (221)
                        .+..+++|+.||
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence              255689999886

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.37  E-value=3.5e-08  Score=83.60  Aligned_cols=110  Identities=16%  Similarity=0.067  Sum_probs=78.1

Q ss_pred             cEEEEEcCCCCCCCCCCccccCCCCCCCccccCccc-cCCCCCcEEeCccCCCCCCcccccc-----cCCCCCcEEEccC
Q 027602           79 HILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSL-LDLEHLSYLDLSFNDFQGVQIPRFI-----GSMGNQKYLNLLG  152 (221)
Q Consensus        79 ~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l-~~l~~L~~L~L~~n~l~g~~ip~~~-----~~l~~L~~L~l~~  152 (221)
                      .++.++|++                |.+...-...+ ..+++|+.|+|++|.++. .-...+     ...++|++|++++
T Consensus       102 ~L~~L~Ls~----------------n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~-~~~~~L~~~L~~~~~~L~~L~Ls~  164 (372)
T 3un9_A          102 ALDEVNLAS----------------CQLDPAGLRTLLPVFLRARKLGLQLNSLGP-EACKDLRDLLLHDQCQITTLRLSN  164 (372)
T ss_dssp             CEEEEECTT----------------CCCCHHHHHHTHHHHHTEEEEECCSSCCCH-HHHHHHHHHHHSTTCCCCEEECCS
T ss_pred             CceEEEecC----------------CCCCHHHHHHHHHHHHhccHhhcCCCCCCH-HHHHHHHHHHHhcCCccceeeCCC
Confidence            567777776                56654332222 346789999999999985 323333     2467899999999


Q ss_pred             CcCCCC----CccccCCCCCCCEEeCcCCCCCCcC---CC-cCCCCCCCCEEEcccCCCCC
Q 027602          153 SQFGGV----IPHQLGNLSSLRYLDLSRNFLYVVN---FG-WLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       153 N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~~~---~p-~~~~l~~L~~L~l~~N~l~g  205 (221)
                      |.++..    ++..+...++|++|++++|.+....   +. .+...++|++|++++|.|+.
T Consensus       165 n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          165 NPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             SCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             CCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            998642    4445567889999999999985221   12 45667899999999999975

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.21  E-value=1.9e-07  Score=71.24  Aligned_cols=111  Identities=15%  Similarity=0.087  Sum_probs=81.0

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCC-CCcc----ccCccccCCCCCcEEeCccCCCCCC---cccccccCCCCCcEEE
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRS-MLVG----KVNPSLLDLEHLSYLDLSFNDFQGV---QIPRFIGSMGNQKYLN  149 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n-~l~g----~~p~~l~~l~~L~~L~L~~n~l~g~---~ip~~~~~l~~L~~L~  149 (221)
                      ..++.++|++                | .+..    .+...+...++|++|+|++|.+...   .+...+...++|++|+
T Consensus        36 ~~L~~L~L~~----------------n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~   99 (185)
T 1io0_A           36 PDLEEVNLNN----------------IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN   99 (185)
T ss_dssp             TTCCEEECTT----------------CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred             CCCCEEEecC----------------CCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEE
Confidence            4688898887                4 5553    2345566778999999999999741   1334455568899999


Q ss_pred             ccCCcCCCC----CccccCCCCCCCEEeC--cCCCCCCcC---CC-cCCCCCCCCEEEcccCCCC
Q 027602          150 LLGSQFGGV----IPHQLGNLSSLRYLDL--SRNFLYVVN---FG-WLSGLSFLEHLDFSTTRKM  204 (221)
Q Consensus       150 l~~N~l~g~----~p~~l~~l~~L~~L~l--~~N~l~~~~---~p-~~~~l~~L~~L~l~~N~l~  204 (221)
                      |++|.++..    +...+...++|++|++  ++|.+....   +. .+...++|++|++++|.+.
T Consensus       100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          100 VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            999998753    4556777789999999  889985222   11 3445688999999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=4.9e-06  Score=68.78  Aligned_cols=86  Identities=16%  Similarity=0.136  Sum_probs=49.1

Q ss_pred             CCCCcEEeCccCCCCCCcccc-cccCCCCCcEEEccCCcCCCCCccccCCCCCCC-EEeCcCCCCCCcCCC--cCCCCCC
Q 027602          117 LEHLSYLDLSFNDFQGVQIPR-FIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR-YLDLSRNFLYVVNFG--WLSGLSF  192 (221)
Q Consensus       117 l~~L~~L~L~~n~l~g~~ip~-~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~-~L~l~~N~l~~~~~p--~~~~l~~  192 (221)
                      +++|+.+++++|+++  .+|. .|..+++|+.+++.+| ++..-+..|.++++|+ .+++.+ .++  .++  .|.++++
T Consensus       225 ~~~L~~l~L~~n~i~--~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~--~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT--TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT--AIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC--EECTTTTTTCTT
T ss_pred             cCCCeEEECCCCCcc--eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce--EEchhhhhCCcc
Confidence            556666666666666  3443 3566666666666665 4433334556666666 666665 443  222  5566666


Q ss_pred             CCEEEcccCCCCCCCC
Q 027602          193 LEHLDFSTTRKMGFTD  208 (221)
Q Consensus       193 L~~L~l~~N~l~g~ip  208 (221)
                      |+.+++++|+++.--+
T Consensus       299 L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          299 LRYVLATGDKITTLGD  314 (329)
T ss_dssp             EEEEEECSSCCCEECT
T ss_pred             CCEEEeCCCccCccch
Confidence            6666666666554333

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.11  E-value=1.6e-07  Score=83.30  Aligned_cols=91  Identities=18%  Similarity=0.076  Sum_probs=65.7

Q ss_pred             cccCCCCCcEEeCccCCCCCCcccccccC-CCCCcEEEccCCcCCCCCcccc-CCCCCCCEEeCcCCCCCCcCCC-cCCC
Q 027602          113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGS-MGNQKYLNLLGSQFGGVIPHQL-GNLSSLRYLDLSRNFLYVVNFG-WLSG  189 (221)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~-l~~L~~L~l~~N~l~g~~p~~l-~~l~~L~~L~l~~N~l~~~~~p-~~~~  189 (221)
                      .+..+++|+.|++++ .+++ ..+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.++...+. ....
T Consensus       427 l~~~~~~L~~L~L~~-~l~~-~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~  504 (594)
T 2p1m_B          427 IVEHCKDLRRLSLSG-LLTD-KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK  504 (594)
T ss_dssp             HHHHCTTCCEEECCS-SCCH-HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred             HHhhCCCccEEeecC-cccH-HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHh
Confidence            356778888888876 6665 44455554 7889999999998876544444 5688899999999988522233 3345


Q ss_pred             CCCCCEEEcccCCCCC
Q 027602          190 LSFLEHLDFSTTRKMG  205 (221)
Q Consensus       190 l~~L~~L~l~~N~l~g  205 (221)
                      +++|++|++++|+++.
T Consensus       505 l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          505 LETMRSLWMSSCSVSF  520 (594)
T ss_dssp             GGGSSEEEEESSCCBH
T ss_pred             CCCCCEEeeeCCCCCH
Confidence            7899999999998843

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.09  E-value=1.8e-06  Score=76.61  Aligned_cols=91  Identities=11%  Similarity=-0.091  Sum_probs=41.3

Q ss_pred             CccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC---CCCccccCCCCCCCEEeCcCCCCCCcCCC-c
Q 027602          111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG---GVIPHQLGNLSSLRYLDLSRNFLYVVNFG-W  186 (221)
Q Consensus       111 p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~---g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~  186 (221)
                      +..+.++++|+.|++++|.+.  .+|..+..+++|++|+++.....   +..+..+..+++|+.++++++..  ..+| .
T Consensus       213 ~~~~~~~~~L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~l~~~  288 (592)
T 3ogk_B          213 ETIARNCRSLVSVKVGDFEIL--ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP--NEMPIL  288 (592)
T ss_dssp             HHHHHHCTTCCEEECSSCBGG--GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT--TTGGGG
T ss_pred             HHHHhhCCCCcEEeccCccHH--HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch--hHHHHH
Confidence            333444555555555555554  24444444555555555432111   11222333444444444444321  2333 3


Q ss_pred             CCCCCCCCEEEcccCCCCC
Q 027602          187 LSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       187 ~~~l~~L~~L~l~~N~l~g  205 (221)
                      +..+++|++|++++|.+++
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~  307 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLET  307 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCH
T ss_pred             HhhcCCCcEEecCCCcCCH
Confidence            3345566666666666544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.05  E-value=1e-05  Score=66.88  Aligned_cols=89  Identities=13%  Similarity=0.106  Sum_probs=67.4

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCccc-ccccCCCCCc-EEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIP-RFIGSMGNQK-YLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip-~~~~~l~~L~-~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                      |++...-+..|.++++|+.+++.+| ++  .|+ ..|..+++|+ .+++.+ .++..-+..|.++++|+.++++.|.++ 
T Consensus       236 n~i~~I~~~aF~~~~~L~~l~l~~n-i~--~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-  310 (329)
T 3sb4_A          236 TNATTIPDFTFAQKKYLLKIKLPHN-LK--TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-  310 (329)
T ss_dssp             BCCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-
T ss_pred             CCcceecHhhhhCCCCCCEEECCcc-cc--eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-
Confidence            4555444556888999999999887 66  444 5588889998 999988 665444577888999999999888885 


Q ss_pred             cCCC--cCCCCCCCCEEEc
Q 027602          182 VNFG--WLSGLSFLEHLDF  198 (221)
Q Consensus       182 ~~~p--~~~~l~~L~~L~l  198 (221)
                       .++  .|.++++|+.++.
T Consensus       311 -~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          311 -TLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             -EECTTTTCTTCCCCEEEC
T ss_pred             -ccchhhhcCCcchhhhcc
Confidence             333  7888889988763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.03  E-value=1.4e-07  Score=83.70  Aligned_cols=98  Identities=18%  Similarity=0.173  Sum_probs=56.9

Q ss_pred             CCCccccCcccc-CCCCCcEEeCccC-CCCCCcccccccCCCCCcEEEccCCcCCCCCcccc----CCCCCCCEEeCcCC
Q 027602          104 SMLVGKVNPSLL-DLEHLSYLDLSFN-DFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL----GNLSSLRYLDLSRN  177 (221)
Q Consensus       104 n~l~g~~p~~l~-~l~~L~~L~L~~n-~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l----~~l~~L~~L~l~~N  177 (221)
                      |.+.+..+..+. .+++|++|++++| .++...++..+..+++|++|++++|.+++..+..+    ..+++|++|++++|
T Consensus       115 ~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~  194 (594)
T 2p1m_B          115 MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL  194 (594)
T ss_dssp             CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred             cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc
Confidence            356555555554 5677777777777 44420134444467777777777777665433322    35567777777777


Q ss_pred             C--CCCcCCCc-CCCCCCCCEEEcccC
Q 027602          178 F--LYVVNFGW-LSGLSFLEHLDFSTT  201 (221)
Q Consensus       178 ~--l~~~~~p~-~~~l~~L~~L~l~~N  201 (221)
                      .  +....++. ...+++|++|++++|
T Consensus       195 ~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          195 ASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            5  22111221 234577777777776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.99  E-value=1.7e-06  Score=65.85  Aligned_cols=99  Identities=12%  Similarity=0.072  Sum_probs=73.8

Q ss_pred             cccCccccCCCCCcEEeCccC-CCCCC---cccccccCCCCCcEEEccCCcCCCC----CccccCCCCCCCEEeCcCCCC
Q 027602          108 GKVNPSLLDLEHLSYLDLSFN-DFQGV---QIPRFIGSMGNQKYLNLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFL  179 (221)
Q Consensus       108 g~~p~~l~~l~~L~~L~L~~n-~l~g~---~ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l  179 (221)
                      ..+...+...+.|++|+|++| .+...   .+...+...++|++|+|++|.+...    +...+...++|++|++++|.+
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            344455677899999999999 88741   1345566778999999999998643    334455568899999999999


Q ss_pred             CCcC---CC-cCCCCCCCCEEEc--ccCCCCCC
Q 027602          180 YVVN---FG-WLSGLSFLEHLDF--STTRKMGF  206 (221)
Q Consensus       180 ~~~~---~p-~~~~l~~L~~L~l--~~N~l~g~  206 (221)
                      ....   +. .+...++|++|++  ++|.++..
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence            6322   22 5666789999999  88998753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.93  E-value=2e-06  Score=65.04  Aligned_cols=86  Identities=10%  Similarity=-0.034  Sum_probs=59.3

Q ss_pred             CCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCc-CCCCCccccCCC----CCCCEEeCcCCC-CCCcCCCcCCCCC
Q 027602          118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQ-FGGVIPHQLGNL----SSLRYLDLSRNF-LYVVNFGWLSGLS  191 (221)
Q Consensus       118 ~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~-l~g~~p~~l~~l----~~L~~L~l~~N~-l~~~~~p~~~~l~  191 (221)
                      ..|+.||++++.++. .--..+..+++|++|+|+++. ++..--..+..+    ++|++|+++++. ++...+..+.+++
T Consensus        61 ~~L~~LDLs~~~Itd-~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMS-IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCG-GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccH-HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            468888888888875 333456778888888888875 554322334443    368888888875 6644455666788


Q ss_pred             CCCEEEcccCC-CC
Q 027602          192 FLEHLDFSTTR-KM  204 (221)
Q Consensus       192 ~L~~L~l~~N~-l~  204 (221)
                      +|++|+++++. ++
T Consensus       140 ~L~~L~L~~c~~It  153 (176)
T 3e4g_A          140 NLKYLFLSDLPGVK  153 (176)
T ss_dssp             TCCEEEEESCTTCC
T ss_pred             CCCEEECCCCCCCC
Confidence            88888888874 44

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.33  E-value=0.0008  Score=57.28  Aligned_cols=97  Identities=9%  Similarity=0.044  Sum_probs=69.3

Q ss_pred             CCccccCccccCCCCCcEEeCccCCCCCC---cc-cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCC
Q 027602          105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGV---QI-PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLY  180 (221)
Q Consensus       105 ~l~g~~p~~l~~l~~L~~L~L~~n~l~g~---~i-p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~  180 (221)
                      ++...-...|.++++|+.+++.+|.+...   .+ +..|..+++|+.+.+.+ .++..-...|.++++|+.+++..| ++
T Consensus       258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~  335 (401)
T 4fdw_A          258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT  335 (401)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred             CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence            44433355788899999999988776510   13 35678889999999984 455333457788899999999665 53


Q ss_pred             CcCCC--cCCCCCCCCEEEcccCCCCCC
Q 027602          181 VVNFG--WLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       181 ~~~~p--~~~~l~~L~~L~l~~N~l~g~  206 (221)
                        .++  .|.++ +|+.+++.+|.+.--
T Consensus       336 --~I~~~aF~~~-~L~~l~l~~n~~~~l  360 (401)
T 4fdw_A          336 --QINFSAFNNT-GIKEVKVEGTTPPQV  360 (401)
T ss_dssp             --EECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred             --EEcHHhCCCC-CCCEEEEcCCCCccc
Confidence              333  77788 999999999876543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.31  E-value=9e-05  Score=55.96  Aligned_cols=84  Identities=11%  Similarity=0.071  Sum_probs=63.0

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCC-CCCCcccccccCC----CCCcEEEccC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFND-FQGVQIPRFIGSM----GNQKYLNLLG  152 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~-l~g~~ip~~~~~l----~~L~~L~l~~  152 (221)
                      -++++||+++.                .++..--..+..+++|+.|+|+++. ++. .--..+..+    ++|++|++++
T Consensus        61 ~~L~~LDLs~~----------------~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~  123 (176)
T 3e4g_A           61 YKIQAIDATDS----------------CIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIIS  123 (176)
T ss_dssp             CCEEEEEEESC----------------CCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEES
T ss_pred             ceEeEEeCcCC----------------CccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCC
Confidence            36999999985                4554433457889999999999985 775 333445554    4799999999


Q ss_pred             Cc-CCCCCccccCCCCCCCEEeCcCCC
Q 027602          153 SQ-FGGVIPHQLGNLSSLRYLDLSRNF  178 (221)
Q Consensus       153 N~-l~g~~p~~l~~l~~L~~L~l~~N~  178 (221)
                      +. ++..--..+..+++|++|+++++.
T Consensus       124 C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          124 CGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             CTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            75 765433457789999999999986

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.28  E-value=3.5e-05  Score=64.91  Aligned_cols=90  Identities=18%  Similarity=0.226  Sum_probs=53.3

Q ss_pred             CCCCCcEEeCcc--CCCCCC----cccccc--cCCCCCcEEEccCCcCCCCCcccc---CCCCCCCEEeCcCCCCCCcC-
Q 027602          116 DLEHLSYLDLSF--NDFQGV----QIPRFI--GSMGNQKYLNLLGSQFGGVIPHQL---GNLSSLRYLDLSRNFLYVVN-  183 (221)
Q Consensus       116 ~l~~L~~L~L~~--n~l~g~----~ip~~~--~~l~~L~~L~l~~N~l~g~~p~~l---~~l~~L~~L~l~~N~l~~~~-  183 (221)
                      .+++|+.|+|+.  |...+.    .+...+  ..+++|++|++.+|.+....+..+   ..+++|++|+++.|.+.... 
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            577888887753  221110    111122  246788888888877764333222   24678888888888875211 


Q ss_pred             --CC-cCCCCCCCCEEEcccCCCCC
Q 027602          184 --FG-WLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       184 --~p-~~~~l~~L~~L~l~~N~l~g  205 (221)
                        ++ .+..+++|+.|++++|.++.
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHhhcccCCcceEEECCCCcCCH
Confidence              22 22456788888888887764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.13  E-value=0.0011  Score=47.35  Aligned_cols=35  Identities=14%  Similarity=0.260  Sum_probs=20.7

Q ss_pred             CCcEEeCccCCCCCCcccc-cccCCCCCcEEEccCCcC
Q 027602          119 HLSYLDLSFNDFQGVQIPR-FIGSMGNQKYLNLLGSQF  155 (221)
Q Consensus       119 ~L~~L~L~~n~l~g~~ip~-~~~~l~~L~~L~l~~N~l  155 (221)
                      +|+.|+|++|+++  .+|. .|..+++|++|+|.+|.+
T Consensus        32 ~l~~L~Ls~N~l~--~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLT--ALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCS--SCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCC--ccChhhhhhccccCEEEecCCCe
Confidence            4666666666666  3433 345566666666666655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.05  E-value=0.0034  Score=53.33  Aligned_cols=45  Identities=16%  Similarity=0.011  Sum_probs=25.2

Q ss_pred             CCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEcc
Q 027602          105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLL  151 (221)
Q Consensus       105 ~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~  151 (221)
                      .+...-+..|.++++|+.+++..|.++  .+|...-...+|+.+.+.
T Consensus       167 ~l~~I~~~aF~~c~~L~~l~l~~n~l~--~I~~~aF~~~~L~~l~lp  211 (401)
T 4fdw_A          167 TLEQLKEDIFYYCYNLKKADLSKTKIT--KLPASTFVYAGIEEVLLP  211 (401)
T ss_dssp             TCCEECSSTTTTCTTCCEEECTTSCCS--EECTTTTTTCCCSEEECC
T ss_pred             CccEehHHHhhCcccCCeeecCCCcce--EechhhEeecccCEEEeC
Confidence            333333455677778888888777666  444332223455555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.85  E-value=0.0032  Score=44.88  Aligned_cols=57  Identities=21%  Similarity=0.264  Sum_probs=42.5

Q ss_pred             cEEeCccCCCC-CCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCC
Q 027602          121 SYLDLSFNDFQ-GVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLY  180 (221)
Q Consensus       121 ~~L~L~~n~l~-g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~  180 (221)
                      ..++.+++.++ . .+|..+.  ++|++|+|++|+++..-+..+..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~-~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWA-SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTT-TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccc-cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36788888886 2 4676543  46889999999988544455678888999999998874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.77  E-value=0.00029  Score=59.27  Aligned_cols=87  Identities=16%  Similarity=0.089  Sum_probs=46.2

Q ss_pred             CCCCcEEeCccCCCCCCccccccc--CCCCCcEEEccC--CcCCCC-----Ccccc--CCCCCCCEEeCcCCCCCCcCCC
Q 027602          117 LEHLSYLDLSFNDFQGVQIPRFIG--SMGNQKYLNLLG--SQFGGV-----IPHQL--GNLSSLRYLDLSRNFLYVVNFG  185 (221)
Q Consensus       117 l~~L~~L~L~~n~l~g~~ip~~~~--~l~~L~~L~l~~--N~l~g~-----~p~~l--~~l~~L~~L~l~~N~l~~~~~p  185 (221)
                      +++|+.|++..+.++. .....+.  .+++|++|+|+.  |...+.     +...+  ..+++|++|++.+|.+. ...+
T Consensus       192 ~~~L~~L~L~~~~l~~-~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~-~~~~  269 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPD-SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ-NVVV  269 (362)
T ss_dssp             CTTCSEEEEECSBCCH-HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH-HHHH
T ss_pred             CCCCcEEEEecCCCCh-HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc-hHHH
Confidence            4566666666555543 2222232  567777777642  221111     11112  24677777777777764 2111


Q ss_pred             ----cCCCCCCCCEEEcccCCCCC
Q 027602          186 ----WLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       186 ----~~~~l~~L~~L~l~~N~l~g  205 (221)
                          ....+++|++|+++.|.+++
T Consensus       270 ~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          270 EMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             HHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHHHhCccCCCCCEEECCCCCCCh
Confidence                11246678888887777766

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.11  E-value=0.0015  Score=50.08  Aligned_cols=91  Identities=10%  Similarity=0.025  Sum_probs=49.1

Q ss_pred             ccccCCCCCcEEeCccCCCCCC---cccccccCCCCCcEEEccCCcCCCC----CccccCCCCCCCEEeCcCCCC-CCcC
Q 027602          112 PSLLDLEHLSYLDLSFNDFQGV---QIPRFIGSMGNQKYLNLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFL-YVVN  183 (221)
Q Consensus       112 ~~l~~l~~L~~L~L~~n~l~g~---~ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l-~~~~  183 (221)
                      +.+..-+.|+.|+|++|.+...   .+...+..-+.|++|+|++|.+...    +-+.+..-+.|+.|++++|.. .-+.
T Consensus        64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~  143 (197)
T 1pgv_A           64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN  143 (197)
T ss_dssp             HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred             HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence            3344556777777777777630   1223333446677777777777532    223344445677777765422 1011


Q ss_pred             -----CC-cCCCCCCCCEEEcccCC
Q 027602          184 -----FG-WLSGLSFLEHLDFSTTR  202 (221)
Q Consensus       184 -----~p-~~~~l~~L~~L~l~~N~  202 (221)
                           +. .+..-+.|+.|+++.|.
T Consensus       144 ~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          144 QVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCcCeEeccCCC
Confidence                 11 23334567777776554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.80  E-value=0.049  Score=45.66  Aligned_cols=84  Identities=11%  Similarity=0.273  Sum_probs=55.4

Q ss_pred             ccccCCCCCcEEeCccCCCCCCccc-ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC--cCC
Q 027602          112 PSLLDLEHLSYLDLSFNDFQGVQIP-RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG--WLS  188 (221)
Q Consensus       112 ~~l~~l~~L~~L~L~~n~l~g~~ip-~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~~  188 (221)
                      ..+.+++.|+.+.+. +.++  .++ ..|..+++|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++  .+.  .|.
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~--~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~--~I~~~aF~  354 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRIT--ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT--KIPESAFS  354 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC--BCCGGGGT
T ss_pred             cccccccccccccCC-Cccc--ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC--EEhHhHhh
Confidence            345667777777775 3444  343 45677788888888764 33222356777888888888654 43  344  677


Q ss_pred             CCCCCCEEEcccCC
Q 027602          189 GLSFLEHLDFSTTR  202 (221)
Q Consensus       189 ~l~~L~~L~l~~N~  202 (221)
                      ++.+|+.+++.+|.
T Consensus       355 ~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          355 NCTALNNIEYSGSR  368 (394)
T ss_dssp             TCTTCCEEEESSCH
T ss_pred             CCCCCCEEEECCce
Confidence            88888888887653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.48  E-value=0.042  Score=45.70  Aligned_cols=82  Identities=13%  Similarity=0.151  Sum_probs=53.9

Q ss_pred             ccccCCCCCcEEeCccCCCCCCccc-ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC--cCC
Q 027602          112 PSLLDLEHLSYLDLSFNDFQGVQIP-RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG--WLS  188 (221)
Q Consensus       112 ~~l~~l~~L~~L~L~~n~l~g~~ip-~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~~  188 (221)
                      ..+.++..|+.+.+..+ +.  .++ ..|..+++|+.+.+.++.++..-...|.++.+|+.+++..+ ++  .++  .|.
T Consensus       257 ~aF~~~~~l~~i~l~~~-i~--~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~  330 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAK-VK--TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK--TIQVYAFK  330 (379)
T ss_dssp             TTTTTCTTCCEEEECCC-CS--EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTT
T ss_pred             cccceeehhcccccccc-ce--eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc--EEHHHHhh
Confidence            34556677777777543 43  333 35677888888888877766333456778888888888654 43  343  677


Q ss_pred             CCCCCCEEEcc
Q 027602          189 GLSFLEHLDFS  199 (221)
Q Consensus       189 ~l~~L~~L~l~  199 (221)
                      ++.+|+.+.+.
T Consensus       331 ~C~~L~~i~ip  341 (379)
T 4h09_A          331 NCKALSTISYP  341 (379)
T ss_dssp             TCTTCCCCCCC
T ss_pred             CCCCCCEEEEC
Confidence            77777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.16  E-value=0.011  Score=45.22  Aligned_cols=92  Identities=12%  Similarity=0.060  Sum_probs=63.1

Q ss_pred             cCccccCCCCCcEEeCccC-CCCCC---cccccccCCCCCcEEEccCCcCCCC----CccccCCCCCCCEEeCcCCCCCC
Q 027602          110 VNPSLLDLEHLSYLDLSFN-DFQGV---QIPRFIGSMGNQKYLNLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       110 ~p~~l~~l~~L~~L~L~~n-~l~g~---~ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                      +...+.+-+.|+.|+|++| .+...   .+-..+..-++|+.|+|++|.+...    +.+.+..-+.|++|+|++|.+..
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3334455678999999985 77530   1334566678999999999998643    22334345789999999999952


Q ss_pred             cCCC----cCCCCCCCCEEEcccC
Q 027602          182 VNFG----WLSGLSFLEHLDFSTT  201 (221)
Q Consensus       182 ~~~p----~~~~l~~L~~L~l~~N  201 (221)
                      ....    .+..-+.|++|+|++|
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCC
Confidence            2221    3455567999999865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.11  E-value=0.041  Score=46.14  Aligned_cols=87  Identities=14%  Similarity=0.100  Sum_probs=57.4

Q ss_pred             CccccCCCCCcEEeCccCCCCCCcc-cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCC
Q 027602          111 NPSLLDLEHLSYLDLSFNDFQGVQI-PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSG  189 (221)
Q Consensus       111 p~~l~~l~~L~~L~L~~n~l~g~~i-p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~  189 (221)
                      ...|.++.+|+.+++..+ ++  .| ...|..+++|+.+.+..+ ++..-...|.++++|+.+++.+|...   ...+..
T Consensus       304 ~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~  376 (394)
T 4gt6_A          304 ESVFAGCISLKSIDIPEG-IT--QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAIST  376 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBC
T ss_pred             ceeecCCCCcCEEEeCCc-cc--EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhc
Confidence            356788999999999765 55  34 356889999999999765 54333467889999999999987642   235667


Q ss_pred             CCCCCEEEcccCCCC
Q 027602          190 LSFLEHLDFSTTRKM  204 (221)
Q Consensus       190 l~~L~~L~l~~N~l~  204 (221)
                      ..+|+.+.+..|.+.
T Consensus       377 ~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          377 DSGLQNLPVAPGSID  391 (394)
T ss_dssp             CCCC-----------
T ss_pred             cCCCCEEEeCCCCEE
Confidence            788998888776553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.91  E-value=0.065  Score=44.93  Aligned_cols=82  Identities=13%  Similarity=0.137  Sum_probs=57.9

Q ss_pred             cccCCCCCcEEeCccCCCCCCccc-ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC--cCCC
Q 027602          113 SLLDLEHLSYLDLSFNDFQGVQIP-RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG--WLSG  189 (221)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~g~~ip-~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~~~  189 (221)
                      .+..+.+|+.+.+..+ ++  .|+ ..|..+++|+.+++..+ ++..-...|.++++|+.+++..| ++  .++  .|.+
T Consensus       292 ~F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~~  364 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR--KIGANAFQG  364 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC--EECTTTBTT
T ss_pred             cccccccccccccccc-cc--eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc--EehHHHhhC
Confidence            3556777888877654 44  343 45778889999998754 44233456788899999999776 53  343  7888


Q ss_pred             CCCCCEEEcccC
Q 027602          190 LSFLEHLDFSTT  201 (221)
Q Consensus       190 l~~L~~L~l~~N  201 (221)
                      +.+|+.+++..+
T Consensus       365 C~~L~~i~lp~~  376 (394)
T 4fs7_A          365 CINLKKVELPKR  376 (394)
T ss_dssp             CTTCCEEEEEGG
T ss_pred             CCCCCEEEECCC
Confidence            999999988654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.12  E-value=0.072  Score=44.64  Aligned_cols=79  Identities=11%  Similarity=0.181  Sum_probs=58.5

Q ss_pred             CccccCCCCCcEEeCccCCCCCCcc-cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCC
Q 027602          111 NPSLLDLEHLSYLDLSFNDFQGVQI-PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLS  188 (221)
Q Consensus       111 p~~l~~l~~L~~L~L~~n~l~g~~i-p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~  188 (221)
                      ...|.++++|+.+++..+ ++  .| ...|..+++|+.+.+..+ ++..-...|.++++|+.+++..+- .  .+. .|.
T Consensus       313 ~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~--~~~~~F~  385 (394)
T 4fs7_A          313 EEAFESCTSLVSIDLPYL-VE--EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E--QYRYDFE  385 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CC--EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G--GGGGGBC
T ss_pred             hhhhcCCCCCCEEEeCCc-cc--EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E--Ehhheec
Confidence            446788999999999754 66  45 356889999999999877 553334578899999999997653 2  233 677


Q ss_pred             CCCCCCEE
Q 027602          189 GLSFLEHL  196 (221)
Q Consensus       189 ~l~~L~~L  196 (221)
                      ++++|+.+
T Consensus       386 ~c~~L~~I  393 (394)
T 4fs7_A          386 DTTKFKWI  393 (394)
T ss_dssp             TTCEEEEE
T ss_pred             CCCCCcEE
Confidence            78877764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.53  E-value=0.34  Score=40.09  Aligned_cols=84  Identities=13%  Similarity=0.113  Sum_probs=60.5

Q ss_pred             ccccCCCCCcEEeCccCCCCCCcc-cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC--cCC
Q 027602          112 PSLLDLEHLSYLDLSFNDFQGVQI-PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG--WLS  188 (221)
Q Consensus       112 ~~l~~l~~L~~L~L~~n~l~g~~i-p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~~  188 (221)
                      ..+.++..|+.+.+..+ ++  .+ ...+..+.+|+.+.+..+ +...-...+.++++|+.+.+.++.++  .++  .|.
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~--~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~--~I~~~aF~  307 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VT--SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE--TLEPRVFM  307 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CC--EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC--EECTTTTT
T ss_pred             ccccCCccceEEEcCCC-cc--EeCccccceeehhcccccccc-ceeccccccccccccccccccccccc--eehhhhhc
Confidence            45667788888888665 44  33 345677888999988764 33222346788999999999988875  444  788


Q ss_pred             CCCCCCEEEcccC
Q 027602          189 GLSFLEHLDFSTT  201 (221)
Q Consensus       189 ~l~~L~~L~l~~N  201 (221)
                      ++.+|+.+.+..+
T Consensus       308 ~c~~L~~i~lp~~  320 (379)
T 4h09_A          308 DCVKLSSVTLPTA  320 (379)
T ss_dssp             TCTTCCEEECCTT
T ss_pred             CCCCCCEEEcCcc
Confidence            8999999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	221
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.2 bits (139), Expect = 7e-11
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 23/160 (14%)

Query: 34  CLESEREVLLRFKQDLQDPSNRLASWIGDGDCC--LWAGVICDN--VTGHILELNLRNPF 89
           C   +++ LL+ K+DL +P+  L+SW+   DCC   W GV+CD    T  +  L+L    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-- 59

Query: 90  NYYVQPDQFEANPRSMLVGK--VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKY 147
                           L     +  SL +L +L++L +   +     IP  I  +    Y
Sbjct: 60  --------------LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 148 LNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWL 187
           L +  +   G IP  L  + +L  LD S N L       +
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 121 SYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRN 177
           + LDL  N   G  +P+ +  +     LN+  +   G IP Q GNL        + N
Sbjct: 247 NGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 144 NQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFS 199
           N   L+L  ++  G +P  L  L  L  L++S N L          L   +   ++
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQGGNLQRFDVSAYA 299

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 7e-07
 Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSR 176
           L++L+YL L FN+   +     + S+   + L    ++        L NL+++ +L    
Sbjct: 306 LKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 177 NFLYVVNFGWLSGLSFLEHLDFS 199
           N +   +   L+ L+ +  L  +
Sbjct: 361 NQI--SDLTPLANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 7e-06
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
             +  L  L  L  + N          + ++ N  +L+   +Q   + P  L NL+ +  
Sbjct: 323 SPVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 377

Query: 172 LDLSRN 177
           L L+  
Sbjct: 378 LGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF 178
             + LDL  N    +       ++ N   L L+ ++   + P     L  L  L LS+N 
Sbjct: 32  DTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 179 LYVVNFGWLSGLSFLEHLD 197
           L  +       L  L   +
Sbjct: 91  LKELPEKMPKTLQELRVHE 109

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 134 QIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFL 193
           ++P+ +    +   L+L  ++   +      NL +L  L L  N +  ++ G  + L  L
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 194 EHLDFSTTR 202
           E L  S  +
Sbjct: 82  ERLYLSKNQ 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 4e-05
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 4/64 (6%)

Query: 120 LSYLDLSFNDFQGVQIPRFIGSMGNQKYLNL----LGSQFGGVIPHQLGNLSSLRYLDLS 175
           +  LD+   +    +    +  +   + + L    L       I   L    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 176 RNFL 179
            N L
Sbjct: 64  SNEL 67

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 11/62 (17%), Positives = 24/62 (38%)

Query: 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRY 171
                   + ++DLS +  +   +   +      + L+L G +    I + L   S+L  
Sbjct: 40  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 99

Query: 172 LD 173
           L+
Sbjct: 100 LN 101

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 9/50 (18%), Positives = 15/50 (30%)

Query: 154 QFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRK 203
               +        S    LD+SR  ++ +    L  L  L        +K
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKK 237

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.38
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.37
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.35
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.34
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.26
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.24
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.2
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.08
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.06
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.06
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.0
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.99
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.93
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.87
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.84
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.84
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.22
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.07
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.05
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.97
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.87
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.86
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.79
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.46
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.29
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.43

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.2e-29  Score=208.84  Aligned_cols=163  Identities=31%  Similarity=0.528  Sum_probs=139.6

Q ss_pred             CCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCcc--cccceEEcCCC--CcEEEEEcCCCCCCCCCCccccCCCCCCCcc-
Q 027602           34 CLESEREVLLRFKQDLQDPSNRLASWIGDGDCC--LWAGVICDNVT--GHILELNLRNPFNYYVQPDQFEANPRSMLVG-  108 (221)
Q Consensus        34 ~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~c--~w~gv~c~~~~--~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g-  108 (221)
                      |.++|++||++||+.+.+|. .+++|..++|||  .|.||+|+...  +||++|+|++                |++.| 
T Consensus         3 c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~----------------~~l~g~   65 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG----------------LNLPKP   65 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC----------------CCCSSC
T ss_pred             CCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCC----------------CCCCCC
Confidence            78999999999999998874 689999889999  59999998643  4899999999                47776 


Q ss_pred             -ccCccccCCCCCcEEeCcc-CCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-
Q 027602          109 -KVNPSLLDLEHLSYLDLSF-NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-  185 (221)
Q Consensus       109 -~~p~~l~~l~~L~~L~L~~-n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-  185 (221)
                       .+|++++++++|++|+|++ |+++| .+|..++++++|++|++++|++.+..|..+..+..|++++++.|.+. +.+| 
T Consensus        66 ~~lp~~l~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~-~~~p~  143 (313)
T d1ogqa_          66 YPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-GTLPP  143 (313)
T ss_dssp             EECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-SCCCG
T ss_pred             CCCChHHhcCcccccccccccccccc-ccccccccccccchhhhccccccccccccccchhhhccccccccccc-ccCch
Confidence             5788899999999999986 88888 89998999999999999999998888888888888999999988876 5666 


Q ss_pred             cCCCCCCCCEEEcccCCCCCCCCccccccc
Q 027602          186 WLSGLSFLEHLDFSTTRKMGFTDTKLVSVI  215 (221)
Q Consensus       186 ~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~  215 (221)
                      .+..++.++++++++|.++|.+|..+....
T Consensus       144 ~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~  173 (313)
T d1ogqa_         144 SISSLPNLVGITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred             hhccCcccceeecccccccccccccccccc
Confidence            788888999999999999998887665443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=2.5e-16  Score=119.99  Aligned_cols=125  Identities=21%  Similarity=0.183  Sum_probs=104.2

Q ss_pred             ccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCcccc-CccccCCCCCcEEeCccCCCCCCcc
Q 027602           66 CLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKV-NPSLLDLEHLSYLDLSFNDFQGVQI  135 (221)
Q Consensus        66 c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~-p~~l~~l~~L~~L~L~~n~l~g~~i  135 (221)
                      |.|..|.|.+..         ..++.|+|++                |.+++.+ +..|.++++|+.|++++|.+.+ ..
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~----------------N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~-~~   70 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLND----------------NELGRISSDGLFGRLPHLVKLELKRNQLTG-IE   70 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCS----------------CCCCSBCCSCSGGGCTTCCEEECCSSCCCC-BC
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCC----------------CCCcccccccccCCCceEeeeecccccccc-cc
Confidence            678888897421         2456666666                6888755 4567899999999999999997 77


Q ss_pred             cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602          136 PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       136 p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      +..+..+++|++|++++|++++..|..|.++++|++|+|++|+++ ...+ .|..+++|+++++++|.+.+..+
T Consensus        71 ~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          71 PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccccccccccceeeeccccccccCHHHHhCCCcccccccCCcccc-ccCHHHhcCCcccccccccccccccccc
Confidence            788999999999999999999777778899999999999999997 4444 68889999999999999987654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=1.8e-14  Score=109.46  Aligned_cols=121  Identities=17%  Similarity=0.189  Sum_probs=99.0

Q ss_pred             cceEEcCCCCcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcc-cccccCCCCCcE
Q 027602           69 AGVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQI-PRFIGSMGNQKY  147 (221)
Q Consensus        69 ~gv~c~~~~~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~i-p~~~~~l~~L~~  147 (221)
                      .+.+|..     +.++.++                ++++ .+|+.+.  +++++|+|++|++++ .+ +..|..+++|++
T Consensus         4 ~~C~C~~-----~~v~Cs~----------------~~L~-~iP~~lp--~~l~~L~Ls~N~i~~-~~~~~~f~~l~~L~~   58 (192)
T d1w8aa_           4 AMCHCEG-----TTVDCTG----------------RGLK-EIPRDIP--LHTTELLLNDNELGR-ISSDGLFGRLPHLVK   58 (192)
T ss_dssp             TTSEEET-----TEEECTT----------------SCCS-SCCSCCC--TTCSEEECCSCCCCS-BCCSCSGGGCTTCCE
T ss_pred             CCCEEcC-----CEEEEeC----------------CCcC-ccCCCCC--CCCCEEEeCCCCCcc-cccccccCCCceEee
Confidence            4667764     2577777                4666 6777664  689999999999986 45 455789999999


Q ss_pred             EEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccccc
Q 027602          148 LNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVI  215 (221)
Q Consensus       148 L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~  215 (221)
                      |++++|.+.+..+..+..+++|++|++++|+++ ...+ .|.++++|++|+|++|+|++..|..+..+.
T Consensus        59 L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~  126 (192)
T d1w8aa_          59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN  126 (192)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred             eeccccccccccccccccccccceeeecccccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCc
Confidence            999999999888889999999999999999997 3344 788899999999999999998777665443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.8e-14  Score=102.11  Aligned_cols=97  Identities=21%  Similarity=0.174  Sum_probs=82.8

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |+++ .++ .+.++++|++|++++|.++  .+|+.+..+++|++|++++|.++. +| .+..+++|+++++++|+++...
T Consensus         8 n~l~-~l~-~l~~l~~L~~L~ls~N~l~--~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~   81 (124)
T d1dcea3           8 KDLT-VLC-HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSA   81 (124)
T ss_dssp             SCCS-SCC-CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSS
T ss_pred             CCCC-CCc-ccccCCCCCEEECCCCccC--cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCC
Confidence            6776 444 4889999999999999999  688889999999999999999984 55 5899999999999999996332


Q ss_pred             -CCcCCCCCCCCEEEcccCCCCCC
Q 027602          184 -FGWLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       184 -~p~~~~l~~L~~L~l~~N~l~g~  206 (221)
                       +..+..+++|+++++++|++++.
T Consensus        82 ~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          82 AIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             TTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CchhhcCCCCCCEEECCCCcCCcC
Confidence             23577899999999999999863

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.47  E-value=9e-15  Score=118.94  Aligned_cols=109  Identities=21%  Similarity=0.376  Sum_probs=98.6

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |++.|.+|+++.++++|++|++++|++.+ ..|..+..+++|+++++++|.+.+.+|..+.+++.++++++++|.+. +.
T Consensus        87 N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~-~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~-~~  164 (313)
T d1ogqa_          87 NNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS-GA  164 (313)
T ss_dssp             TTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE-EE
T ss_pred             cccccccccccccccccchhhhccccccc-cccccccchhhhcccccccccccccCchhhccCcccceeeccccccc-cc
Confidence            78999999999999999999999999998 78888999999999999999999999999999999999999999997 67


Q ss_pred             CC-cCCCCCCC-CEEEcccCCCCCCCCcccccc
Q 027602          184 FG-WLSGLSFL-EHLDFSTTRKMGFTDTKLVSV  214 (221)
Q Consensus       184 ~p-~~~~l~~L-~~L~l~~N~l~g~ip~~~~~~  214 (221)
                      +| .+..+..+ +.+++++|+++|..|..+..+
T Consensus       165 ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l  197 (313)
T d1ogqa_         165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            77 66676665 899999999999988776544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.5e-13  Score=99.67  Aligned_cols=109  Identities=18%  Similarity=0.093  Sum_probs=87.7

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG  157 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g  157 (221)
                      -++..|+|++                |+++. ++..+..+++|+.|++++|.++  .++ .+..+++|++|++++|+++.
T Consensus        18 ~~lr~L~L~~----------------n~I~~-i~~~~~~l~~L~~L~Ls~N~i~--~l~-~~~~l~~L~~L~ls~N~i~~   77 (162)
T d1a9na_          18 VRDRELDLRG----------------YKIPV-IENLGATLDQFDAIDFSDNEIR--KLD-GFPLLRRLKTLLVNNNRICR   77 (162)
T ss_dssp             TSCEEEECTT----------------SCCCS-CCCGGGGTTCCSEEECCSSCCC--EEC-CCCCCSSCCEEECCSSCCCE
T ss_pred             CcCcEEECCC----------------CCCCc-cCccccccccCCEEECCCCCCC--ccC-CcccCcchhhhhcccccccC
Confidence            3578899998                57764 4655678999999999999999  664 48889999999999999985


Q ss_pred             CCccccCCCCCCCEEeCcCCCCCCc-CCCcCCCCCCCCEEEcccCCCCCC
Q 027602          158 VIPHQLGNLSSLRYLDLSRNFLYVV-NFGWLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       158 ~~p~~l~~l~~L~~L~l~~N~l~~~-~~p~~~~l~~L~~L~l~~N~l~g~  206 (221)
                      ..+..+..+++|++|++++|+++.. .+..+..+++|++|++++|.++..
T Consensus        78 l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          78 IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             CCccccccccccccceeccccccccccccccccccccchhhcCCCccccc
Confidence            4444456799999999999999632 223577899999999999998653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.3e-12  Score=94.59  Aligned_cols=93  Identities=22%  Similarity=0.125  Sum_probs=70.1

Q ss_pred             ccCccccCCCCCcEEeCccC-CCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-c
Q 027602          109 KVNPSLLDLEHLSYLDLSFN-DFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-W  186 (221)
Q Consensus       109 ~~p~~l~~l~~L~~L~L~~n-~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~  186 (221)
                      .+|..+..+++|+.|++++| .++. .-+..|..+++|+.|++++|+++...|..|..+++|++|+|++|+++  .+| .
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~--~l~~~   98 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE--SLSWK   98 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS--CCCST
T ss_pred             cCcccccCccccCeeecCCCccccc-cCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc--ccChh
Confidence            34566777888888998765 4773 33355888889999999999988666777888889999999999985  444 4


Q ss_pred             CCCCCCCCEEEcccCCCC
Q 027602          187 LSGLSFLEHLDFSTTRKM  204 (221)
Q Consensus       187 ~~~l~~L~~L~l~~N~l~  204 (221)
                      .....+|++|++++|.|.
T Consensus        99 ~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          99 TVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             TTCSCCCCEEECCSSCCC
T ss_pred             hhccccccccccCCCccc
Confidence            444457889999998885

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.8e-12  Score=101.01  Aligned_cols=104  Identities=20%  Similarity=0.181  Sum_probs=55.8

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCC--------------
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSL--------------  169 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L--------------  169 (221)
                      |.+.+..+..|.++++|++|++++|.++  .+|. +..+++|++|++++|++++ .+..+.++++|              
T Consensus        41 N~i~~l~~~~f~~l~~L~~L~L~~N~l~--~l~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~  116 (266)
T d1p9ag_          41 NLLYTFSLATLMPYTRLTQLNLDRAELT--KLQV-DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLP  116 (266)
T ss_dssp             SCCSEEEGGGGTTCTTCCEEECTTSCCC--EEEC-CSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCC
T ss_pred             CcCCCcCHHHhhcccccccccccccccc--cccc-ccccccccccccccccccc-cccccccccccccccccccccceee
Confidence            4555444445555556666666666555  3432 3445555555555555542 33344444444              


Q ss_pred             ----------CEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCcccc
Q 027602          170 ----------RYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLV  212 (221)
Q Consensus       170 ----------~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~  212 (221)
                                ++|++++|.+. ...+ .+..+++|+++++++|++++..+..+.
T Consensus       117 ~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~  169 (266)
T d1p9ag_         117 LGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN  169 (266)
T ss_dssp             SSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred             ccccccccccccccccccccc-eeccccccccccchhcccccccccccCccccc
Confidence                      44555555543 2222 344567777777777777776665443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7.3e-13  Score=106.08  Aligned_cols=105  Identities=22%  Similarity=0.128  Sum_probs=87.0

Q ss_pred             CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602          102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                      ..|++.+..+..+..+++|+.|++++|++++ ..+..+..+++|+++++++|++++..|..+..+++|++|++++|++. 
T Consensus       137 ~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~-  214 (284)
T d1ozna_         137 QDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-  214 (284)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-
T ss_pred             ccccccccChhHhccccchhhcccccCcccc-cchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccc-
Confidence            3467776666778888999999999999986 55667788999999999999998888888999999999999999986 


Q ss_pred             cCCC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602          182 VNFG-WLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       182 ~~~p-~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      ...+ .+..+++|++|++++|++.+.-+
T Consensus       215 ~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         215 ALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cccccccccccccCEEEecCCCCCCCcc
Confidence            4444 67888999999999999887643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=2e-12  Score=91.30  Aligned_cols=80  Identities=23%  Similarity=0.247  Sum_probs=72.5

Q ss_pred             cEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEccc
Q 027602          121 SYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFST  200 (221)
Q Consensus       121 ~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~  200 (221)
                      ++|++++|.++  .++. +..+++|++|++++|+++ .+|+.++.+++|++|++++|.++  .+|.+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~--~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~--~l~~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT--VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVDGVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS--SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC--CCGGGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC--CCcc-cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc--ccCccccccccCeEECCC
Confidence            58999999999  5664 889999999999999998 68888999999999999999995  567889999999999999


Q ss_pred             CCCCCC
Q 027602          201 TRKMGF  206 (221)
Q Consensus       201 N~l~g~  206 (221)
                      |+++..
T Consensus        75 N~i~~~   80 (124)
T d1dcea3          75 NRLQQS   80 (124)
T ss_dssp             SCCCSS
T ss_pred             CccCCC
Confidence            999864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.6e-12  Score=102.77  Aligned_cols=108  Identities=22%  Similarity=0.141  Sum_probs=84.0

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+..+..+..+++|+.+++++|++++ ..+..+..+++|++|++++|++++..+..+.++++|+++++++|+++ +.
T Consensus       115 n~~~~~~~~~~~~~~~L~~l~l~~N~l~~-i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~-~i  192 (284)
T d1ozna_         115 CGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HV  192 (284)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred             cccccccccccchhcccchhhhccccccc-cChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc-cc
Confidence            56655556667778888888888888885 44556778888888999888888766777788888999999988886 44


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS  213 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~  213 (221)
                      .| .|..+++|++|++++|++++..|..+..
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~  223 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             ChhHhhhhhhccccccccccccccccccccc
Confidence            45 7778888999999999998877765543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.1e-12  Score=99.09  Aligned_cols=105  Identities=23%  Similarity=0.215  Sum_probs=60.7

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+ .+..+.++++|++|++++|.+.+ ..+..+..+.++++|++++|.++...+..+..+++++.+++++|+++ ..
T Consensus        87 N~l~~-~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~-~~  163 (266)
T d1p9ag_          87 NQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL  163 (266)
T ss_dssp             SCCSS-CCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CC
T ss_pred             ccccc-cccccccccccccccccccccce-eeccccccccccccccccccccceeccccccccccchhccccccccc-cc
Confidence            44443 34455566666666666666654 33444455566666666666665443444455666667777776665 22


Q ss_pred             CC-cCCCCCCCCEEEcccCCCCCCCCcccc
Q 027602          184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKLV  212 (221)
Q Consensus       184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~  212 (221)
                      .+ .+..+++|++|++++|+|+ .||..+.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~  192 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGFF  192 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             CccccccccccceeecccCCCc-ccChhHC
Confidence            33 4556666777777777666 5665443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.26  E-value=3.8e-11  Score=96.64  Aligned_cols=67  Identities=18%  Similarity=0.132  Sum_probs=43.9

Q ss_pred             cccccceEEcCC---------CCcEEEEEcCCCC-CCCC------CCccccCC-CCCCCccccCccccCCCCCcEEeCcc
Q 027602           65 CCLWAGVICDNV---------TGHILELNLRNPF-NYYV------QPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSF  127 (221)
Q Consensus        65 ~c~w~gv~c~~~---------~~~v~~l~l~~~~-~~l~------~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~  127 (221)
                      .|.|++|.|.+.         ...++.|+++++. ..+.      ...+..+. ..|.+....|..|.++++|++|++++
T Consensus         9 ~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_           9 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            378999999752         2457888988864 1111      11111111 44677766677888899999999988


Q ss_pred             CCCC
Q 027602          128 NDFQ  131 (221)
Q Consensus       128 n~l~  131 (221)
                      |+++
T Consensus        89 n~l~   92 (305)
T d1xkua_          89 NQLK   92 (305)
T ss_dssp             SCCS
T ss_pred             CccC
Confidence            8765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.24  E-value=3.6e-11  Score=96.74  Aligned_cols=104  Identities=15%  Similarity=0.146  Sum_probs=87.2

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |...+..+..+.+++.+++|++++|.+++ ..+..+..+++|++|++++|+++ .+|..+.++++|++|++++|+++  .
T Consensus       181 n~~~~~~~~~~~~~~~l~~L~~s~n~l~~-~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~--~  256 (305)
T d1xkua_         181 NKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS--A  256 (305)
T ss_dssp             SCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC--C
T ss_pred             CcCCCCChhHhhccccccccccccccccc-cccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC--c
Confidence            67777888889999999999999999996 55677888999999999999998 67889999999999999999986  3


Q ss_pred             CC--------cCCCCCCCCEEEcccCCCC-CCCCccc
Q 027602          184 FG--------WLSGLSFLEHLDFSTTRKM-GFTDTKL  211 (221)
Q Consensus       184 ~p--------~~~~l~~L~~L~l~~N~l~-g~ip~~~  211 (221)
                      ++        ......+|+.|++++|.+. +.++...
T Consensus       257 i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~  293 (305)
T d1xkua_         257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST  293 (305)
T ss_dssp             CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred             cChhhccCcchhcccCCCCEEECCCCcCccCcCCHhH
Confidence            32        2335678999999999985 5565443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.4e-11  Score=90.86  Aligned_cols=88  Identities=13%  Similarity=0.049  Sum_probs=75.1

Q ss_pred             cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCC
Q 027602          113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLS  191 (221)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~  191 (221)
                      .+.+...+++|+|++|+++  .++..+..+++|++|++++|.++ .+ +.+..+++|++|++++|+++ ...+ .+..++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~--~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~   87 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   87 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             hccCcCcCcEEECCCCCCC--ccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhccccccc-CCCcccccccc
Confidence            3667889999999999999  67877788999999999999998 45 35889999999999999996 3333 345699


Q ss_pred             CCCEEEcccCCCCC
Q 027602          192 FLEHLDFSTTRKMG  205 (221)
Q Consensus       192 ~L~~L~l~~N~l~g  205 (221)
                      +|++|++++|+++.
T Consensus        88 ~L~~L~L~~N~i~~  101 (162)
T d1a9na_          88 DLTELILTNNSLVE  101 (162)
T ss_dssp             TCCEEECCSCCCCC
T ss_pred             ccccceeccccccc
Confidence            99999999999986

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=6.6e-10  Score=84.08  Aligned_cols=94  Identities=28%  Similarity=0.401  Sum_probs=71.3

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+++..|  +.++++|+.|++++|.+.  .++. +..+++|+++++++|.....  ..+..+++|+++++++|.+.  .
T Consensus        72 N~l~~~~~--l~~l~~L~~L~l~~n~~~--~~~~-l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~--~  142 (199)
T d2omxa2          72 NQLTDITP--LKNLTKLVDILMNNNQIA--DITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS--D  142 (199)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCC--CCGG-GTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC--C
T ss_pred             ccccCccc--ccCCcccccccccccccc--cccc-cccccccccccccccccccc--cccchhhhhHHhhhhhhhhc--c
Confidence            56665433  778888888888888877  4553 67788888888888877642  34778888899999888874  5


Q ss_pred             CCcCCCCCCCCEEEcccCCCCCC
Q 027602          184 FGWLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       184 ~p~~~~l~~L~~L~l~~N~l~g~  206 (221)
                      ++.+..+++|+.|++.+|++++.
T Consensus       143 ~~~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         143 ISALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             CGGGTTCTTCSEEECCSSCCCCC
T ss_pred             cccccccccccccccccccccCC
Confidence            66777888899999999988874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.5e-10  Score=81.56  Aligned_cols=92  Identities=16%  Similarity=0.005  Sum_probs=75.4

Q ss_pred             CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCc-CCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCC
Q 027602          116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQ-FGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFL  193 (221)
Q Consensus       116 ~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~-l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L  193 (221)
                      .+...+.++.+++.+.  .+|..+..+++|++|++++|+ ++...+..|.++++|+.|++++|+++ ...+ .|..+++|
T Consensus         6 ~c~~~~~l~c~~~~~~--~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L   82 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL--DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRL   82 (156)
T ss_dssp             CCSSSSCEECCSSCCC--TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCC
T ss_pred             CcCCCCeEEecCCCCc--cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-Ccccccccccccc
Confidence            3445677899999988  688889999999999998764 77555677999999999999999997 3333 68889999


Q ss_pred             CEEEcccCCCCCCCCccc
Q 027602          194 EHLDFSTTRKMGFTDTKL  211 (221)
Q Consensus       194 ~~L~l~~N~l~g~ip~~~  211 (221)
                      ++|+|++|+|+. +|...
T Consensus        83 ~~L~Ls~N~l~~-l~~~~   99 (156)
T d2ifga3          83 SRLNLSFNALES-LSWKT   99 (156)
T ss_dssp             CEEECCSSCCSC-CCSTT
T ss_pred             cceeccCCCCcc-cChhh
Confidence            999999999994 55443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=8.3e-10  Score=83.52  Aligned_cols=121  Identities=22%  Similarity=0.293  Sum_probs=88.8

Q ss_pred             CcEEEEEcCCCC-CCC----CCCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEcc
Q 027602           78 GHILELNLRNPF-NYY----VQPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLL  151 (221)
Q Consensus        78 ~~v~~l~l~~~~-~~l----~~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~  151 (221)
                      .+++.++++++. ..+    ....+..+. ..|.+. .++ .+.++++|+.|+++++....  ++ .+..+++|+.++++
T Consensus        62 ~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~--~~-~~~~l~~L~~L~l~  136 (199)
T d2omxa2          62 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD--ID-PLKNLTNLNRLELS  136 (199)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC--CG-GGTTCTTCSEEECC
T ss_pred             CCcCcCccccccccCcccccCCcccccccccccccc-ccc-cccccccccccccccccccc--cc-ccchhhhhHHhhhh
Confidence            467788887753 111    011111111 224443 233 47899999999999999884  33 47789999999999


Q ss_pred             CCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCCCCC
Q 027602          152 GSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       152 ~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      +|++.. ++ .+..+++|+.|++.+|+++  .++.+.++++|++|++++|+++. ||
T Consensus       137 ~n~l~~-~~-~l~~~~~L~~L~l~~n~l~--~l~~l~~l~~L~~L~ls~N~i~~-i~  188 (199)
T d2omxa2         137 SNTISD-IS-ALSGLTSLQQLNFSSNQVT--DLKPLANLTTLERLDISSNKVSD-IS  188 (199)
T ss_dssp             SSCCCC-CG-GGTTCTTCSEEECCSSCCC--CCGGGTTCTTCCEEECCSSCCCC-CG
T ss_pred             hhhhcc-cc-ccccccccccccccccccc--CCccccCCCCCCEEECCCCCCCC-Cc
Confidence            999873 43 5889999999999999996  56678899999999999999987 44

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.00  E-value=1.7e-09  Score=82.53  Aligned_cols=95  Identities=23%  Similarity=0.273  Sum_probs=69.3

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN  183 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~  183 (221)
                      |.+.+. + .+.++++|++|++++|+++  .+| .+..+++|+.+++++|.+. .+ ..+..++.++.++++.|.++  .
T Consensus        78 n~i~~l-~-~~~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~--~  148 (210)
T d1h6ta2          78 NKLTDI-K-PLANLKNLGWLFLDENKVK--DLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--D  148 (210)
T ss_dssp             SCCCCC-G-GGTTCTTCCEEECCSSCCC--CGG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCC--C
T ss_pred             ccccCc-c-ccccCcccccccccccccc--ccc-ccccccccccccccccccc-cc-cccccccccccccccccccc--c
Confidence            566653 3 2567788888888888887  455 4677788888888888765 23 35677788888888888874  4


Q ss_pred             CCcCCCCCCCCEEEcccCCCCCCC
Q 027602          184 FGWLSGLSFLEHLDFSTTRKMGFT  207 (221)
Q Consensus       184 ~p~~~~l~~L~~L~l~~N~l~g~i  207 (221)
                      ++.+..+++|+++++++|++++..
T Consensus       149 ~~~~~~l~~L~~l~l~~n~l~~i~  172 (210)
T d1h6ta2         149 ITVLSRLTKLDTLSLEDNQISDIV  172 (210)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCG
T ss_pred             cccccccccccccccccccccccc
Confidence            456667889999999999998743

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=1.7e-09  Score=82.47  Aligned_cols=121  Identities=21%  Similarity=0.153  Sum_probs=90.8

Q ss_pred             CcEEEEEcCCCC-CCCC----CCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEcc
Q 027602           78 GHILELNLRNPF-NYYV----QPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLL  151 (221)
Q Consensus        78 ~~v~~l~l~~~~-~~l~----~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~  151 (221)
                      .+++.++++++. ..+.    ...+..+. ..|.+.+ +| .+.++++|+.|++++|.+.  .++ .+..+++++.++++
T Consensus        68 ~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~--~~~-~l~~l~~l~~l~~~  142 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS--DIN-GLVHLPQLESLYLG  142 (210)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC--CCG-GGGGCTTCCEEECC
T ss_pred             CCCCEEeCCCccccCccccccCccccccccccccccc-cc-ccccccccccccccccccc--ccc-cccccccccccccc
Confidence            367888888764 1111    01111111 3467764 44 5888999999999999987  444 57889999999999


Q ss_pred             CCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCCCCC
Q 027602          152 GSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       152 ~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                      +|.+++  +..+..+++|+++++++|.++  .++.+.++++|++|++++|+++. ||
T Consensus       143 ~n~l~~--~~~~~~l~~L~~l~l~~n~l~--~i~~l~~l~~L~~L~Ls~N~i~~-l~  194 (210)
T d1h6ta2         143 NNKITD--ITVLSRLTKLDTLSLEDNQIS--DIVPLAGLTKLQNLYLSKNHISD-LR  194 (210)
T ss_dssp             SSCCCC--CGGGGGCTTCSEEECCSSCCC--CCGGGTTCTTCCEEECCSSCCCB-CG
T ss_pred             cccccc--ccccccccccccccccccccc--ccccccCCCCCCEEECCCCCCCC-Ch
Confidence            999874  345778999999999999996  46668899999999999999984 55

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.97  E-value=1.3e-09  Score=89.53  Aligned_cols=88  Identities=23%  Similarity=0.318  Sum_probs=60.1

Q ss_pred             ccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCC
Q 027602          114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFL  193 (221)
Q Consensus       114 l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L  193 (221)
                      +.+++.++.+++..|.+++  + ..+..+++++++++++|++++. + .+..+++|++|++++|+++  .++.+.++++|
T Consensus       281 ~~~~~~l~~l~~~~n~l~~--~-~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~--~l~~l~~l~~L  353 (384)
T d2omza2         281 LAGLTALTNLELNENQLED--I-SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS--DVSSLANLTNI  353 (384)
T ss_dssp             GTTCTTCSEEECCSSCCSC--C-GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC--CCGGGGGCTTC
T ss_pred             ccccccccccccccccccc--c-cccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC--CChhHcCCCCC
Confidence            3444455555555555543  2 2356677788888888888753 3 3677888888888888875  45667778888


Q ss_pred             CEEEcccCCCCCCCC
Q 027602          194 EHLDFSTTRKMGFTD  208 (221)
Q Consensus       194 ~~L~l~~N~l~g~ip  208 (221)
                      ++|++++|++++-+|
T Consensus       354 ~~L~l~~N~l~~l~~  368 (384)
T d2omza2         354 NWLSAGHNQISDLTP  368 (384)
T ss_dssp             CEEECCSSCCCBCGG
T ss_pred             CEEECCCCcCCCChh
Confidence            888888888887554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.93  E-value=1.9e-09  Score=88.47  Aligned_cols=84  Identities=21%  Similarity=0.425  Sum_probs=72.2

Q ss_pred             ccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCC
Q 027602          112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLS  191 (221)
Q Consensus       112 ~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~  191 (221)
                      ..+..+++++.|++++|++++  +++ +..+++|++|++++|++++ ++ .+.++++|++|++++|+++  .++.+.+++
T Consensus       301 ~~~~~~~~l~~L~ls~n~l~~--l~~-l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~--~l~~l~~l~  373 (384)
T d2omza2         301 SPISNLKNLTYLTLYFNNISD--ISP-VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQIS--DLTPLANLT  373 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCSC--CGG-GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCC--BCGGGTTCT
T ss_pred             cccchhcccCeEECCCCCCCC--Ccc-cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCC--CChhhccCC
Confidence            347788999999999999996  443 7889999999999999984 44 6899999999999999996  444588899


Q ss_pred             CCCEEEcccCC
Q 027602          192 FLEHLDFSTTR  202 (221)
Q Consensus       192 ~L~~L~l~~N~  202 (221)
                      +|+.|++++|.
T Consensus       374 ~L~~L~L~~Na  384 (384)
T d2omza2         374 RITQLGLNDQA  384 (384)
T ss_dssp             TCSEEECCCEE
T ss_pred             CCCEeeCCCCc
Confidence            99999999983

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.87  E-value=7.8e-09  Score=79.40  Aligned_cols=89  Identities=21%  Similarity=0.280  Sum_probs=65.2

Q ss_pred             ccCCCCCcEEeCccCCCCCC-------------------cccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeC
Q 027602          114 LLDLEHLSYLDLSFNDFQGV-------------------QIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDL  174 (221)
Q Consensus       114 l~~l~~L~~L~L~~n~l~g~-------------------~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l  174 (221)
                      +..+++|+.++++++...+.                   .....+..+++|++|++++|.+++.  ..+.++++|+.|++
T Consensus       103 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~L  180 (227)
T d1h6ua2         103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKA  180 (227)
T ss_dssp             GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred             ccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceeccc
Confidence            55666666666666655531                   0012345677888889988887643  34788999999999


Q ss_pred             cCCCCCCcCCCcCCCCCCCCEEEcccCCCCCC
Q 027602          175 SRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       175 ~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g~  206 (221)
                      ++|+++  .++.+.++++|++|++++|++++-
T Consensus       181 s~n~l~--~l~~l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         181 DDNKIS--DISPLASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             CSSCCC--CCGGGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccC--CChhhcCCCCCCEEECcCCcCCCC
Confidence            999985  567788899999999999999864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.84  E-value=8.2e-09  Score=79.30  Aligned_cols=81  Identities=19%  Similarity=0.251  Sum_probs=69.6

Q ss_pred             cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCC
Q 027602          113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSF  192 (221)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~  192 (221)
                      .+.++++|+.|++++|.+++  ++ .+..+++|+.|++++|++++ ++ .+.++++|++|++++|+++  .++.+.++++
T Consensus       146 ~~~~~~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt--~i~~l~~l~~  218 (227)
T d1h6ua2         146 PLAGLTNLQYLSIGNAQVSD--LT-PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS--DVSPLANTSN  218 (227)
T ss_dssp             GGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC--BCGGGTTCTT
T ss_pred             hhcccccccccccccccccc--ch-hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC--CCcccccCCC
Confidence            36778999999999999985  33 37889999999999999985 44 4889999999999999996  5667889999


Q ss_pred             CCEEEccc
Q 027602          193 LEHLDFST  200 (221)
Q Consensus       193 L~~L~l~~  200 (221)
                      |++|++++
T Consensus       219 L~~L~lsn  226 (227)
T d1h6ua2         219 LFIVTLTN  226 (227)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEeeC
Confidence            99999974

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.84  E-value=9e-12  Score=94.89  Aligned_cols=109  Identities=22%  Similarity=0.190  Sum_probs=84.9

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG  157 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g  157 (221)
                      ..++.+++++                |++. .++ .+.++++|+.|++++|.++  .+|.....+++|++|++++|.++.
T Consensus        48 ~~L~~L~Ls~----------------n~I~-~i~-~l~~l~~L~~L~Ls~N~i~--~i~~~~~~~~~L~~L~l~~N~i~~  107 (198)
T d1m9la_          48 KACKHLALST----------------NNIE-KIS-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             TTCCEEECSE----------------EEES-CCC-CHHHHTTCCEEECCEEEEC--SCSSHHHHHHHCCEEECSEEECCC
T ss_pred             cccceeECcc----------------cCCC-Ccc-cccCCccccChhhcccccc--cccccccccccccccccccccccc
Confidence            3566777766                5666 444 4888999999999999998  677666666789999999999873


Q ss_pred             CCccccCCCCCCCEEeCcCCCCCCc-CCCcCCCCCCCCEEEcccCCCCCCCC
Q 027602          158 VIPHQLGNLSSLRYLDLSRNFLYVV-NFGWLSGLSFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       158 ~~p~~l~~l~~L~~L~l~~N~l~~~-~~p~~~~l~~L~~L~l~~N~l~g~ip  208 (221)
                       + +.+..+++|++|++++|+++.. .+..+..+++|++|++++|+++...+
T Consensus       108 -l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         108 -L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             -H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             -c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence             4 3577889999999999999621 12357889999999999998876544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.80  E-value=2e-11  Score=92.93  Aligned_cols=91  Identities=23%  Similarity=0.210  Sum_probs=69.3

Q ss_pred             ccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCC
Q 027602          109 KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLS  188 (221)
Q Consensus       109 ~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~  188 (221)
                      .+|..+..+++|++|++++|.++  .++ .+..+++|++|++++|.++ .+|.....+++|++|++++|.++  .++.+.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~--~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~--~l~~~~  112 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE--KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA--SLSGIE  112 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES--CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC--CHHHHH
T ss_pred             hhhhHHhcccccceeECcccCCC--Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc--cccccc
Confidence            34556778888888888888888  565 4777888888888888886 45654445567888888888885  455666


Q ss_pred             CCCCCCEEEcccCCCCC
Q 027602          189 GLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       189 ~l~~L~~L~l~~N~l~g  205 (221)
                      .+++|++|++++|+++.
T Consensus       113 ~l~~L~~L~L~~N~i~~  129 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHHHSSEEEESEEECCC
T ss_pred             ccccccccccccchhcc
Confidence            77888888888888875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.8e-08  Score=77.80  Aligned_cols=76  Identities=17%  Similarity=0.202  Sum_probs=48.3

Q ss_pred             CCCccccCccccCCCCCcEEeCccCCCCCCccc-ccccCCCCCcEEEccC-CcCCCCCccccCCCCCCCEEeCcCCCCC
Q 027602          104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIP-RFIGSMGNQKYLNLLG-SQFGGVIPHQLGNLSSLRYLDLSRNFLY  180 (221)
Q Consensus       104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip-~~~~~l~~L~~L~l~~-N~l~g~~p~~l~~l~~L~~L~l~~N~l~  180 (221)
                      |.+....+..|.++++|++|++++|.+.. .++ ..|..++.++++.+.. |.+....+..+.++++|+++++++|.+.
T Consensus        39 n~i~~l~~~~f~~l~~L~~L~ls~n~~~~-~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          39 TKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CCCCEECTTTTTTCTTCCEEEEESCTTCC-EECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             CcCCccChhHhhccchhhhhhhccccccc-eeeccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence            46654444456777777777777777764 443 3456677777776643 4555455555667777777777777664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.70  E-value=5.8e-08  Score=78.13  Aligned_cols=98  Identities=26%  Similarity=0.280  Sum_probs=77.7

Q ss_pred             cEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCC
Q 027602           79 HILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV  158 (221)
Q Consensus        79 ~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~  158 (221)
                      +++.++|++                ++++ .+|+.   +++|++|++++|+++  .+|..+   .+|+.|++++|+++ .
T Consensus        39 ~l~~LdLs~----------------~~L~-~lp~~---~~~L~~L~Ls~N~l~--~lp~~~---~~L~~L~l~~n~l~-~   92 (353)
T d1jl5a_          39 QAHELELNN----------------LGLS-SLPEL---PPHLESLVASCNSLT--ELPELP---QSLKSLLVDNNNLK-A   92 (353)
T ss_dssp             TCSEEECTT----------------SCCS-CCCSC---CTTCSEEECCSSCCS--SCCCCC---TTCCEEECCSSCCS-C
T ss_pred             CCCEEEeCC----------------CCCC-CCCCC---CCCCCEEECCCCCCc--ccccch---hhhhhhhhhhcccc-h
Confidence            467889988                4665 57753   468999999999999  788754   57899999999987 4


Q ss_pred             CccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCCCC
Q 027602          159 IPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFT  207 (221)
Q Consensus       159 ~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g~i  207 (221)
                      ++. +  .+.|++|++++|.+.  .+|.+..+++|++|++++|.+++..
T Consensus        93 l~~-l--p~~L~~L~L~~n~l~--~lp~~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_          93 LSD-L--PPLLEYLGVSNNQLE--KLPELQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             CCS-C--CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSCCC
T ss_pred             hhh-h--ccccccccccccccc--cccchhhhccceeeccccccccccc
Confidence            442 1  246999999999985  6777788999999999999887654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.7e-08  Score=76.75  Aligned_cols=97  Identities=16%  Similarity=0.191  Sum_probs=76.1

Q ss_pred             CCccccCccccCCCCCcEEeCccCCCCCCcccc-cccCCCCCcEEEccCCcCCCCCc-cccCCCCCCCEEeCcC-CCCCC
Q 027602          105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPR-FIGSMGNQKYLNLLGSQFGGVIP-HQLGNLSSLRYLDLSR-NFLYV  181 (221)
Q Consensus       105 ~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~-~~~~l~~L~~L~l~~N~l~g~~p-~~l~~l~~L~~L~l~~-N~l~~  181 (221)
                      +++ .+|+.+.  +++++|++++|.++  .+|. .|.++++|++|++++|.+...++ ..+.+++.++++++.. |.+. 
T Consensus        19 ~l~-~iP~~l~--~~l~~L~Ls~n~i~--~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-   92 (242)
T d1xwdc1          19 KVT-EIPSDLP--RNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-   92 (242)
T ss_dssp             SCS-SCCSCSC--SCCSEEEEESCCCC--EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-
T ss_pred             CCC-CcCCCCC--CCCCEEECcCCcCC--ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-
Confidence            444 5665553  57999999999999  5665 58899999999999999876554 4577899999998764 5665 


Q ss_pred             cCCC-cCCCCCCCCEEEcccCCCCCCC
Q 027602          182 VNFG-WLSGLSFLEHLDFSTTRKMGFT  207 (221)
Q Consensus       182 ~~~p-~~~~l~~L~~L~l~~N~l~g~i  207 (221)
                      ...+ .+..+++|+++++++|.++...
T Consensus        93 ~~~~~~~~~l~~L~~l~l~~~~l~~~~  119 (242)
T d1xwdc1          93 YINPEAFQNLPNLQYLLISNTGIKHLP  119 (242)
T ss_dssp             EECTTSEECCTTCCEEEEESCCCCSCC
T ss_pred             ccccccccccccccccccchhhhcccc
Confidence            3334 6788999999999999997643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.3e-07  Score=78.46  Aligned_cols=111  Identities=19%  Similarity=0.153  Sum_probs=81.0

Q ss_pred             cEEEEEcCCCCCCCCCCccccCCCCCCCccc-cCccccCCCCCcEEeCccCCCCCC---cccccccCCCCCcEEEccCCc
Q 027602           79 HILELNLRNPFNYYVQPDQFEANPRSMLVGK-VNPSLLDLEHLSYLDLSFNDFQGV---QIPRFIGSMGNQKYLNLLGSQ  154 (221)
Q Consensus        79 ~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~-~p~~l~~l~~L~~L~L~~n~l~g~---~ip~~~~~l~~L~~L~l~~N~  154 (221)
                      +++.||+++                |++++. +..-+..++++++|+|++|.++..   .+...+..+++|++|+|++|.
T Consensus         3 ~l~~ld~~~----------------~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~   66 (460)
T d1z7xw1           3 DIQSLDIQC----------------EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE   66 (460)
T ss_dssp             EEEEEEEES----------------CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred             CCCEEEeeC----------------CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc
Confidence            578888887                477653 233456688999999999998831   234556788999999999999


Q ss_pred             CCCC----CccccC-CCCCCCEEeCcCCCCCCcC---CC-cCCCCCCCCEEEcccCCCCC
Q 027602          155 FGGV----IPHQLG-NLSSLRYLDLSRNFLYVVN---FG-WLSGLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       155 l~g~----~p~~l~-~l~~L~~L~l~~N~l~~~~---~p-~~~~l~~L~~L~l~~N~l~g  205 (221)
                      ++..    +...+. ...+|++|++++|.++...   ++ .+..+++|++|++++|.++.
T Consensus        67 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          67 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            8531    223332 2357999999999986322   22 46778999999999998864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.20  E-value=3.4e-06  Score=67.37  Aligned_cols=78  Identities=19%  Similarity=0.172  Sum_probs=63.3

Q ss_pred             CCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEE
Q 027602          118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLD  197 (221)
Q Consensus       118 ~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~  197 (221)
                      .++++|+++++.++  .+|+.   +++|++|++++|+++ .+|..+   .+|+.|++.+|.++  .++.+.  +.|++|+
T Consensus        38 ~~l~~LdLs~~~L~--~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~--~l~~lp--~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS--SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK--ALSDLP--PLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS--CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS--CCCSCC--TTCCEEE
T ss_pred             cCCCEEEeCCCCCC--CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc--hhhhhc--ccccccc
Confidence            46899999999998  68864   578999999999998 788654   67999999999985  455332  4799999


Q ss_pred             cccCCCCCCCCc
Q 027602          198 FSTTRKMGFTDT  209 (221)
Q Consensus       198 l~~N~l~g~ip~  209 (221)
                      +++|.++. +|.
T Consensus       105 L~~n~l~~-lp~  115 (353)
T d1jl5a_         105 VSNNQLEK-LPE  115 (353)
T ss_dssp             CCSSCCSS-CCC
T ss_pred             cccccccc-ccc
Confidence            99999985 553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=3.4e-07  Score=66.64  Aligned_cols=93  Identities=22%  Similarity=0.133  Sum_probs=64.8

Q ss_pred             cccCccccCCCCCcEEeCccCCCCCC-cccccccCCCCCcEEEccCCcCCCCCcc-ccCCCCCCCEEeCcCCCCCCcCCC
Q 027602          108 GKVNPSLLDLEHLSYLDLSFNDFQGV-QIPRFIGSMGNQKYLNLLGSQFGGVIPH-QLGNLSSLRYLDLSRNFLYVVNFG  185 (221)
Q Consensus       108 g~~p~~l~~l~~L~~L~L~~n~l~g~-~ip~~~~~l~~L~~L~l~~N~l~g~~p~-~l~~l~~L~~L~l~~N~l~~~~~p  185 (221)
                      ..++.....+++|++|++++|+++.. .++..+..+++|+.|++++|.++. +++ .......|+.+++++|++. ....
T Consensus        55 ~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~-~~~~  132 (162)
T d1koha1          55 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLS-DTFR  132 (162)
T ss_dssp             HHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTS-SSSS
T ss_pred             hhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcC-cCcc
Confidence            33444445789999999999999841 123456778999999999999984 433 2234457899999999986 3322


Q ss_pred             --------cCCCCCCCCEEEcccCCCC
Q 027602          186 --------WLSGLSFLEHLDFSTTRKM  204 (221)
Q Consensus       186 --------~~~~l~~L~~L~l~~N~l~  204 (221)
                              .+..+++|+.||  ++.+.
T Consensus       133 ~~~~y~~~i~~~~P~L~~LD--g~~v~  157 (162)
T d1koha1         133 DQSTYISAIRERFPKLLRLD--GHELP  157 (162)
T ss_dssp             SHHHHHHHHHTTSTTCCEET--TEECC
T ss_pred             cchhHHHHHHHHCCCCCEEC--cCCCc
Confidence                    145689999885  44443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=5.2e-08  Score=71.12  Aligned_cols=90  Identities=14%  Similarity=-0.026  Sum_probs=63.7

Q ss_pred             cCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCC--CccccCCCCCCCEEeCcCCCCCCcCCC--cCCCC
Q 027602          115 LDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV--IPHQLGNLSSLRYLDLSRNFLYVVNFG--WLSGL  190 (221)
Q Consensus       115 ~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~--~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~~~l  190 (221)
                      ..+..+..++...+...  .++.....++.|++|++++|+++..  ++..+..+++|+.|++++|.++  .++  .....
T Consensus        39 ~~~~~~~~l~~~~~~~~--~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~--~l~~l~~l~~  114 (162)
T d1koha1          39 VAQNIDVVLNRRSSMAA--TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK--SERELDKIKG  114 (162)
T ss_dssp             TTTTCCCCTTSHHHHHH--HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC--CGGGHHHHTT
T ss_pred             hhccchhhcchhhhHhh--hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc--cchhhhhhhc
Confidence            33344444444444443  3444456789999999999999853  2344667899999999999996  444  23344


Q ss_pred             CCCCEEEcccCCCCCCCC
Q 027602          191 SFLEHLDFSTTRKMGFTD  208 (221)
Q Consensus       191 ~~L~~L~l~~N~l~g~ip  208 (221)
                      .+|+.+++++|.++....
T Consensus       115 ~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1         115 LKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             CCCSSCCCTTSTTSSSSS
T ss_pred             cccceeecCCCCcCcCcc
Confidence            579999999999998654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.8e-07  Score=73.04  Aligned_cols=90  Identities=21%  Similarity=0.156  Sum_probs=53.1

Q ss_pred             CccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCC-cCCCC-CccccCCCCCCCEEeCcCC-CCCCcCCC-c
Q 027602          111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGS-QFGGV-IPHQLGNLSSLRYLDLSRN-FLYVVNFG-W  186 (221)
Q Consensus       111 p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N-~l~g~-~p~~l~~l~~L~~L~l~~N-~l~~~~~p-~  186 (221)
                      ...+..+++|++|+++++.+++ ..+..+..+++|++|+++++ .++.. +..-..++++|++|+++++ .++...+. .
T Consensus        64 ~~l~~~c~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~  142 (284)
T d2astb2          64 HGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  142 (284)
T ss_dssp             HHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HHHHHhCCCcccccccccCCCc-HHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhh
Confidence            3445667777777777777776 56666777777777777774 44321 1122345677777777764 33322222 2


Q ss_pred             CCC-CCCCCEEEcccC
Q 027602          187 LSG-LSFLEHLDFSTT  201 (221)
Q Consensus       187 ~~~-l~~L~~L~l~~N  201 (221)
                      +.. .++|+.|++++.
T Consensus       143 ~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         143 VAHVSETITQLNLSGY  158 (284)
T ss_dssp             HHHSCTTCCEEECCSC
T ss_pred             hcccccccchhhhccc
Confidence            222 456777777653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.97  E-value=7e-07  Score=72.30  Aligned_cols=96  Identities=19%  Similarity=0.111  Sum_probs=66.9

Q ss_pred             CccccCCCCCcEEeCccCCCCCC---cccccccCCCCCcEEEccCCcCCCCCcc----ccC--CCCCCCEEeCcCCCCCC
Q 027602          111 NPSLLDLEHLSYLDLSFNDFQGV---QIPRFIGSMGNQKYLNLLGSQFGGVIPH----QLG--NLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       111 p~~l~~l~~L~~L~L~~n~l~g~---~ip~~~~~l~~L~~L~l~~N~l~g~~p~----~l~--~l~~L~~L~l~~N~l~~  181 (221)
                      ...+..+++|+.|++++|.++..   .+...+...++|++|++++|.+++.-..    .+.  ..+.|++|++++|.+..
T Consensus       208 ~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         208 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             hhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            34567788899999999988630   1345567788999999999998754222    222  23679999999998852


Q ss_pred             cCCC----cCC-CCCCCCEEEcccCCCCCC
Q 027602          182 VNFG----WLS-GLSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       182 ~~~p----~~~-~l~~L~~L~l~~N~l~g~  206 (221)
                      ....    .+. +.++|++|++++|.|...
T Consensus       288 ~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         288 DAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            2211    222 467899999999998653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.8e-07  Score=77.61  Aligned_cols=88  Identities=16%  Similarity=0.141  Sum_probs=66.6

Q ss_pred             CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC----CCccccCCCCCCCEEeCcCCCCCCcCCC----cCC-C
Q 027602          119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG----VIPHQLGNLSSLRYLDLSRNFLYVVNFG----WLS-G  189 (221)
Q Consensus       119 ~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g----~~p~~l~~l~~L~~L~l~~N~l~~~~~p----~~~-~  189 (221)
                      +|++||+++|++++..+..-+..+++++.|+|++|.++.    .+...+..+++|++||+++|+++...+.    .+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            589999999999963334556678999999999999873    2445567889999999999998522111    222 2


Q ss_pred             CCCCCEEEcccCCCCCC
Q 027602          190 LSFLEHLDFSTTRKMGF  206 (221)
Q Consensus       190 l~~L~~L~l~~N~l~g~  206 (221)
                      ..+|++|++++|+++..
T Consensus        83 ~~~L~~L~L~~n~it~~   99 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGA   99 (460)
T ss_dssp             TCCCCEEECTTSCCBGG
T ss_pred             CCCCCEEECCCCCcccc
Confidence            35799999999999764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.7e-06  Score=66.33  Aligned_cols=61  Identities=21%  Similarity=0.092  Sum_probs=30.0

Q ss_pred             CCCCCcEEEccCC-cCCCCCccccCCCCCCCEEeCcCC-CCCCcCCCcCCCCCCCCEEEcccC
Q 027602          141 SMGNQKYLNLLGS-QFGGVIPHQLGNLSSLRYLDLSRN-FLYVVNFGWLSGLSFLEHLDFSTT  201 (221)
Q Consensus       141 ~l~~L~~L~l~~N-~l~g~~p~~l~~l~~L~~L~l~~N-~l~~~~~p~~~~l~~L~~L~l~~N  201 (221)
                      .+++|++|+++++ .+++.....+.++++|++|+++++ .++...+..+.++++|++|++.++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3455555555553 344444444555555555555553 343222224445555555555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.79  E-value=2.2e-06  Score=69.24  Aligned_cols=94  Identities=16%  Similarity=0.112  Sum_probs=69.1

Q ss_pred             CccccCCCCCcEEeCccCCCCCCc-----ccccccCCCCCcEEEccCCcCCCC----CccccCCCCCCCEEeCcCCCCCC
Q 027602          111 NPSLLDLEHLSYLDLSFNDFQGVQ-----IPRFIGSMGNQKYLNLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFLYV  181 (221)
Q Consensus       111 p~~l~~l~~L~~L~L~~n~l~g~~-----ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~  181 (221)
                      ...+...+.|+.|++++|.++. .     +...+...++|+.|++++|.++..    +...+..+++|++|++++|.+..
T Consensus       179 ~~~l~~~~~L~~L~L~~n~i~~-~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         179 AKTFQSHRLLHTVKMVQNGIRP-EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCH-HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             cchhhhhhhhcccccccccccc-cccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            3445667899999999999873 2     234466788999999999998532    34556788999999999999862


Q ss_pred             cCCCc----CC--CCCCCCEEEcccCCCCC
Q 027602          182 VNFGW----LS--GLSFLEHLDFSTTRKMG  205 (221)
Q Consensus       182 ~~~p~----~~--~l~~L~~L~l~~N~l~g  205 (221)
                      .....    +.  ....|++|++++|.++.
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            22222    22  24679999999999865

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.46  E-value=3.1e-05  Score=56.11  Aligned_cols=91  Identities=10%  Similarity=0.034  Sum_probs=57.1

Q ss_pred             ccccCCCCCcEEeCccCCCCCC---cccccccCCCCCcEEEccCCcCCCC----CccccCCCCCCCEEeCcCCCCCCcC-
Q 027602          112 PSLLDLEHLSYLDLSFNDFQGV---QIPRFIGSMGNQKYLNLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFLYVVN-  183 (221)
Q Consensus       112 ~~l~~l~~L~~L~L~~n~l~g~---~ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~~~-  183 (221)
                      ..+...++|+.|++++|.+...   .+...+...+.|++|++++|.++..    +-..+...++|++|++++|.+.... 
T Consensus        38 ~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~  117 (167)
T d1pgva_          38 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN  117 (167)
T ss_dssp             HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred             HHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccH
Confidence            3455667788888888887630   2223344567788888888887643    2234556677888888887653110 


Q ss_pred             -----CC-cCCCCCCCCEEEcccCC
Q 027602          184 -----FG-WLSGLSFLEHLDFSTTR  202 (221)
Q Consensus       184 -----~p-~~~~l~~L~~L~l~~N~  202 (221)
                           +. .+..-++|+.|+++.+.
T Consensus       118 ~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         118 QVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCccEeeCcCCC
Confidence                 11 23345778888876654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.29  E-value=6.4e-05  Score=54.34  Aligned_cols=89  Identities=12%  Similarity=0.087  Sum_probs=63.8

Q ss_pred             cCCCCCcEEeCccC-CCCCCc----ccccccCCCCCcEEEccCCcCCCC----CccccCCCCCCCEEeCcCCCCCCcCCC
Q 027602          115 LDLEHLSYLDLSFN-DFQGVQ----IPRFIGSMGNQKYLNLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFLYVVNFG  185 (221)
Q Consensus       115 ~~l~~L~~L~L~~n-~l~g~~----ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~~~~p  185 (221)
                      .+.++|+.|+|+++ .++. .    +-..+...++|++|++++|.+...    +...+...+.|++|++++|.+......
T Consensus        12 ~n~~~L~~L~L~~~~~i~~-~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSK-ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCH-HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCH-HHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            34578999999874 5653 2    223466778899999999988632    223444568899999999998632222


Q ss_pred             ----cCCCCCCCCEEEcccCCCC
Q 027602          186 ----WLSGLSFLEHLDFSTTRKM  204 (221)
Q Consensus       186 ----~~~~l~~L~~L~l~~N~l~  204 (221)
                          .+...++|++|++++|.+.
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCC
Confidence                4566788999999998765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.80  E-value=0.00063  Score=48.63  Aligned_cols=110  Identities=15%  Similarity=0.097  Sum_probs=72.3

Q ss_pred             CcEEEEEcCCCCCCCCCCccccCCCCCCCcc----ccCccccCCCCCcEEeCccCCCCCCc----ccccccCCCCCcEEE
Q 027602           78 GHILELNLRNPFNYYVQPDQFEANPRSMLVG----KVNPSLLDLEHLSYLDLSFNDFQGVQ----IPRFIGSMGNQKYLN  149 (221)
Q Consensus        78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g----~~p~~l~~l~~L~~L~L~~n~l~g~~----ip~~~~~l~~L~~L~  149 (221)
                      ..++.+++.+.               +.+..    .+-..+...++|++|++++|.++. .    +-..+...++++.++
T Consensus        17 ~~L~~L~L~~~---------------~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~-~~~~~L~~~l~~~~~l~~l~   80 (166)
T d1io0a_          17 PDLEEVNLNNI---------------MNIPVPTLKACAEALKTNTYVKKFSIVGTRSND-PVAFALAEMLKVNNTLKSLN   80 (166)
T ss_dssp             TTCCEEECTTC---------------TTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH-HHHHHHHHHHHHCSSCCEEE
T ss_pred             CCCcEEEcCCC---------------CCCCHHHHHHHHHHHhcCCccCeeeccCCcccH-HHHHHHHHHHhhcccchhhh
Confidence            46777888763               34432    233455678899999999998874 2    223445678899999


Q ss_pred             ccCCcCCCC----CccccCCCCCCCEEeC--cCCCCCCcC---CC-cCCCCCCCCEEEcccCCC
Q 027602          150 LLGSQFGGV----IPHQLGNLSSLRYLDL--SRNFLYVVN---FG-WLSGLSFLEHLDFSTTRK  203 (221)
Q Consensus       150 l~~N~l~g~----~p~~l~~l~~L~~L~l--~~N~l~~~~---~p-~~~~l~~L~~L~l~~N~l  203 (221)
                      +++|.+...    +-..+...++|+.+++  +.|.+....   +. .+...++|++|+++.+..
T Consensus        81 l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          81 VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             hccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            999987643    2245566788887665  456664211   11 345678999999877653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.43  E-value=0.0023  Score=45.49  Aligned_cols=91  Identities=13%  Similarity=0.101  Sum_probs=62.9

Q ss_pred             ccCCCCCcEEeCcc-CCCCCCc---ccccccCCCCCcEEEccCCcCCCC----CccccCCCCCCCEEeCcCCCCCCcCC-
Q 027602          114 LLDLEHLSYLDLSF-NDFQGVQ---IPRFIGSMGNQKYLNLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFLYVVNF-  184 (221)
Q Consensus       114 l~~l~~L~~L~L~~-n~l~g~~---ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~~~~-  184 (221)
                      ..+.+.|+.|++++ +.++...   +-..+...++|++|++++|.++..    +-..+...++++.+++++|.+..... 
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            35678999999997 5565311   224456789999999999998643    22334556899999999999853222 


Q ss_pred             ---CcCCCCCCCCEEEcc--cCCCC
Q 027602          185 ---GWLSGLSFLEHLDFS--TTRKM  204 (221)
Q Consensus       185 ---p~~~~l~~L~~L~l~--~N~l~  204 (221)
                         ..+...++|+.++++  +|.+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHhCccccEEeeccCCCcCc
Confidence               145667889876664  56663