Citrus Sinensis ID: 027608

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKAQGVVKSAY
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEHEHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHccccccEEEEEEc
Coil and Loop (DISEMBL)
mgvdmgsmraalpSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFlfhrserpqltfSILCSFFLLsvfgcssqIFSFVgiqyssptlSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFvvtfykgppligelshsgsprrlllspqlswilGGFFLAAEAFMNSAWFILQVWPFNFLFYKAqgvvksay
Flexible Loop (DISEMBL)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKAQGVVKSAY
Low Complexity Region (SEG)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAlsslfflfcsflfHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGElshsgsprrlllspqlsWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKAQGVVKSAY
Disordered region (IsUnstruct)
***********LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKAQGVV****
Disordered Region (DISOPRED)
************PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIG******************WILGGFFLAAEAFMNSAWFILQVWPFNFLFYKAQGVVKSAY
Disordered Region (DISEMBL)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKAQGVVKSAY
Disordered Region (DISPRO)
*****GSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL**************LSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKAQGVVKSAY
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKAQGVVKSAY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q94JU2	367	WAT1-related protein At3g	yes	no	0.855	0.514	0.469	4e-35
Q9FL08	368	WAT1-related protein At5g	no	no	0.877	0.527	0.415	3e-31
F4KHA8	370	WAT1-related protein At5g	no	no	0.877	0.524	0.395	8e-31
Q945L4	339	WAT1-related protein At5g	no	no	0.778	0.507	0.422	8e-31
Q9M131	365	WAT1-related protein At4g	no	no	0.859	0.520	0.346	1e-24
F4I5D5	375	WAT1-related protein At1g	no	no	0.855	0.504	0.372	2e-24
Q9M130	365	WAT1-related protein At4g	no	no	0.855	0.517	0.350	4e-24
Q5XEZ0	365	WAT1-related protein At1g	no	no	0.914	0.553	0.333	1e-23
Q9LI65	364	WAT1-related protein At3g	no	no	0.773	0.469	0.371	1e-23
F4JK59	347	WAT1-related protein At4g	no	no	0.841	0.536	0.389	1e-23

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  148 bits (373), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/198 (46%), Positives = 121/198 (61%), Gaps = 9/198 (4%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFF---LFCSFLFHR 65
           R  LP   +VI+  A V    + KAA  KG++ +V IVYS  L++L     LFCSF   R
Sbjct: 8   REVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSF---R 64

Query: 66  SER-PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 124
           S   P + FSIL    LL + GC S I  + GI YSSPTL++A+ NL PAFTF+LA++FR
Sbjct: 65  SRTLPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFR 124

Query: 125 LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILG 184
           +E ++++  SS AK LGT  SIGGAF+VT Y GP +I +   S S R    +P   WILG
Sbjct: 125 MESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNPN--WILG 182

Query: 185 GFFLAAEAFMNSAWFILQ 202
             FLA E F    W+I+Q
Sbjct: 183 AGFLAVEYFCVPLWYIVQ 200

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  135 bits (339), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 115/200 (57%), Gaps = 6/200 (3%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   M  V  A V +  + KAA  +G++ YV + YS  +S+L  L  S +F RS R
Sbjct: 16  RDVVPFAAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFGRSRR 75

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P     +    FLL + G  SQI    GI YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct: 76  LPAAKSPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQ 135

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL-----SWI 182
           +   + ++QAK +G   SI GA VV  YKGP ++   S +     + L  QL     SWI
Sbjct: 136 VRLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIESSWI 195

Query: 183 LGGFFLAAEAFMNSAWFILQ 202
           +GG  LA++ F+ S W+ILQ
Sbjct: 196 IGGLLLASQYFLISVWYILQ 215

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  133 bits (335), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 117/200 (58%), Gaps = 6/200 (3%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   MV V    V +  + KAA  +G++ YV + Y+  +++L  L  S +F RS+R
Sbjct: 17  RDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKR 76

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P     +  + FLL++ G  S I    GI+YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct: 77  LPSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQ 136

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL-----SWI 182
           +   + ++QAK +GT  SI GA VV  YKGP ++ + S +     + L   L     SWI
Sbjct: 137 IVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWI 196

Query: 183 LGGFFLAAEAFMNSAWFILQ 202
           +GG  LA +  + S W+ILQ
Sbjct: 197 IGGLLLATQYLLVSVWYILQ 216

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  133 bits (335), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/187 (42%), Positives = 111/187 (59%), Gaps = 15/187 (8%)

Query: 17  MVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER-PQLTFSI 75
           MV+   + V    ++KAA SKG++ +V++VYS    SL  L  +F   RS   P LTFSI
Sbjct: 17  MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query: 76  LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSS 135
           LC+  +L +   + QI  + GI+YSSPTLS+AM N+ PAFTF+LA++FR+E ++   KSS
Sbjct: 77  LCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKSS 136

Query: 136 QAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMN 195
            AK LGT  SI GA VVT Y GP              +L+S    WI+GG  LA +  + 
Sbjct: 137 VAKVLGTILSIIGALVVTLYHGP--------------MLMSSHSDWIIGGGLLALQYILV 182

Query: 196 SAWFILQ 202
           S  +++ 
Sbjct: 183 SVSYLVM 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M131|WTR28_ARATH WAT1-related protein At4g01430 OS=Arabidopsis thaliana GN=At4g01430 PE=2 SV=1

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 107/196 (54%), Gaps = 6/196 (3%)

Query: 13  PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLT 72
           P + M+I  +A  S   ++K A+  G+N  +   Y  A+S+L  +  S+++ R  RPQLT
Sbjct: 9   PVIVMLISSVAMGSVNALVKKALDVGVNHMIFGAYRMAISALILVPFSYIWERKTRPQLT 68

Query: 73  FSILCSFFLLSVFGCS-SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKL-NW 130
           F +LC  F+  + G S  Q F  +G+ Y+S T+S A+++++PA TF LA+IFR+E   N 
Sbjct: 69  FMLLCEHFISGLLGASLMQFFFLLGLSYTSATVSMALVSMLPAITFALALIFRIENAQNL 128

Query: 131 ENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLL----SPQLSWILGGF 186
           ++K+   K +GT   I GA ++TFYKGP L    SH  +               W+LG  
Sbjct: 129 KSKAGVLKVMGTLICIMGAMLLTFYKGPELSNPHSHPQARHNNNNNNGHDQTKKWLLGCL 188

Query: 187 FLAAEAFMNSAWFILQ 202
           +L     + S W + Q
Sbjct: 189 YLVIGTVLLSLWMLFQ 204

Arabidopsis thaliana (taxid: 3702)

>sp|F4I5D5|WTR11_ARATH WAT1-related protein At1g70260 OS=Arabidopsis thaliana GN=At1g70260 PE=2 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 116/204 (56%), Gaps = 15/204 (7%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQ- 70
           +P V M I+    ++   + K A++ G++ +V +VY++A  S+  L  SFLFHR+ER + 
Sbjct: 11  VPFVAMAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSFLFHRNERTEQ 70

Query: 71  --LTFSILCSFFLLSVFGCSS-QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              ++ +L   F L   G    Q  +FVG+++SSP +  AM   IP+F+F+L+II    K
Sbjct: 71  SIFSWPLLVRVFFLGFTGIFMFQNLAFVGLRFSSPIVVCAMGLQIPSFSFLLSIILGRSK 130

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLS-PQL------- 179
           L+W N S++AK +GT  S+ GAFV   YKGP +    + S SP R L S P+L       
Sbjct: 131 LDWRNTSTRAKLMGTIVSLSGAFVEELYKGPFI--RPASSASPNRFLKSVPKLLVYYNLP 188

Query: 180 -SWILGGFFLAAEAFMNSAWFILQ 202
            +W LG  FLA   F  S + ++Q
Sbjct: 189 DNWFLGCIFLAVAVFSVSLFNVVQ 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M130|WTR29_ARATH WAT1-related protein At4g01440 OS=Arabidopsis thaliana GN=At4g01440 PE=2 SV=1

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 110/194 (56%), Gaps = 5/194 (2%)

Query: 13  PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLT 72
           P + MV++  A      ++K  +  G+N  VI  Y  A+S+LF    +F + R  RP LT
Sbjct: 10  PVIIMVMINSALGLANALVKKVLDGGVNHMVIATYRLAISTLFLAPIAFFWERKTRPTLT 69

Query: 73  FSILCSFFLLSVFGCS-SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
            +IL   F  ++ G S +Q F  +G+ Y+S TL+ A +++ PA TFV+A+IFR+EKLN +
Sbjct: 70  LNILVQLFFSALVGASLTQYFFLLGLSYTSATLACAFISMTPAITFVMALIFRVEKLNMK 129

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPL--IGEL-SHSGSPRRLLLSPQLSWILGGFFL 188
           +K+     +G    IGGA ++T YKG PL  + +L +H        + P+ +WI+G   L
Sbjct: 130 SKAGMGMVMGALICIGGALLLTMYKGVPLTKLRKLETHQLINNNHAMKPE-NWIIGCVLL 188

Query: 189 AAEAFMNSAWFILQ 202
            A +    +W ++Q
Sbjct: 189 FAGSSCFGSWMLIQ 202

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XEZ0|WTR1_ARATH WAT1-related protein At1g01070 OS=Arabidopsis thaliana GN=At1g01070 PE=2 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 8/210 (3%)

Query: 1   MGVDMGSMRAAL---PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFL 57
           M  DM  +R      P + MV+  +A  S   ++K A+  G+N  VI  Y  A+S+L  +
Sbjct: 1   MAGDMQGVRVVEKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILV 60

Query: 58  FCSFLFHRSERPQLTFSILCSFFLLSVFGCS-SQIFSFVGIQYSSPTLSTAMLNLIPAFT 116
             +++  R  RPQ+TF ++   F+  + G S  Q F  +G+ Y+S T+S A+++++PA T
Sbjct: 61  PFAYVLERKTRPQITFRLMVDHFVSGLLGASLMQFFFLLGLSYTSATVSCALVSMLPAIT 120

Query: 117 FVLAIIFRLEKLN-WENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS---GSPRR 172
           F LA+IFR E +   + K+   K +GT   I GA  +TFYKGP +    SHS    S   
Sbjct: 121 FALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQISNSHSHSHGGASHNN 180

Query: 173 LLLSPQLSWILGGFFLAAEAFMNSAWFILQ 202
                  +W+LG  +L     + S W + Q
Sbjct: 181 NDQDKANNWLLGCLYLTIGTVLLSLWMLFQ 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LI65|WTR24_ARATH WAT1-related protein At3g30340 OS=Arabidopsis thaliana GN=At3g30340 PE=2 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 97/175 (55%), Gaps = 4/175 (2%)

Query: 32  KAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS-SQ 90
           K  + +G+N+ V   Y  A+ +LF +  +    R  RP+LT  ILCS F  ++ G S  Q
Sbjct: 30  KKMIDEGLNRMVATTYRLAVGTLFLIPFAIFLERHNRPKLTGRILCSLFFSALLGTSLVQ 89

Query: 91  IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 150
            F  +G++Y+S T S A  N++P+ TF LA++FR E LN ++   +AK LGT   I GA 
Sbjct: 90  YFFLIGLEYTSSTFSLAFSNMVPSVTFALALVFRQETLNIKSNVGRAKLLGTMICICGAL 149

Query: 151 VVTFYKGPPLIGELS-HSGSPRRLLLSPQLS--WILGGFFLAAEAFMNSAWFILQ 202
           V+T YKG  L  E S H  +  R   +  ++  W +G   L     + S+WFI+Q
Sbjct: 150 VLTLYKGTALSREHSTHMETHTRTDSTGAMTQKWAMGSIMLVISIIIWSSWFIVQ 204

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 112/195 (57%), Gaps = 9/195 (4%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   M+ +    V +  + KAA  +G + YV + Y+   ++L  L  S +F RS  
Sbjct: 13  RDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRS 72

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P    S+    FLL++ G +S++    GI+YSSPTLS+A+ NL PAFTF+LAI FR+E+
Sbjct: 73  LPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQ 132

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFF 187
           +   + ++QAK +GT  SI GA V+  YKGP L+   S +        S + SWI+GG  
Sbjct: 133 VMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFT--------SFESSWIIGGLL 184

Query: 188 LAAEAFMNSAWFILQ 202
           L  +  + S WFILQ
Sbjct: 185 LGLQFLLLSVWFILQ 199

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
255581160	356	Auxin-induced protein 5NG4, putative [Ri	0.914	0.567	0.658	2e-67
356502002	351	PREDICTED: auxin-induced protein 5NG4-li	0.859	0.541	0.586	1e-54
356497781	351	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.855	0.538	0.589	1e-54
225424736	346	PREDICTED: auxin-induced protein 5NG4 [V	0.895	0.572	0.564	1e-53
388502250	352	unknown [Medicago truncatula]	0.904	0.568	0.532	1e-51
357486015	598	Auxin-induced protein 5NG4 [Medicago tru	0.864	0.319	0.557	2e-51
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.873	0.553	0.533	5e-50
224099697	355	predicted protein [Populus trichocarpa]	0.877	0.546	0.525	1e-48
356497783	347	PREDICTED: auxin-induced protein 5NG4-li	0.859	0.547	0.549	4e-48
224057230	355	predicted protein [Populus trichocarpa]	0.895	0.557	0.507	3e-47

>gi|255581160|ref|XP_002531393.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528986|gb|EEF30977.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 133/202 (65%), Positives = 157/202 (77%)

Query: 1   MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS 60
           MG    ++R+ LP VGMV+ +LAQ SNMEV K A+S+GINKYVIIVYSDALS+L  L CS
Sbjct: 1   MGFMPCNIRSLLPFVGMVVAMLAQASNMEVTKLALSQGINKYVIIVYSDALSTLVLLPCS 60

Query: 61  FLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA 120
           F+ HRS+R  L FS+LC FFLLSVFG  +QI  +VG+QYSSPTL TAMLNLIPAFTF+LA
Sbjct: 61  FIIHRSDRTPLDFSLLCKFFLLSVFGWCAQICGYVGLQYSSPTLGTAMLNLIPAFTFILA 120

Query: 121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS 180
           IIFRLEKL+  +KSS AKSLGT  SI GAFVVTFY+GP + G  SH     +L  SPQ  
Sbjct: 121 IIFRLEKLDRRSKSSIAKSLGTIVSIAGAFVVTFYEGPTVFGIASHIKESHQLFHSPQFF 180

Query: 181 WILGGFFLAAEAFMNSAWFILQ 202
           W++G  FLAAEA M+SAW+ILQ
Sbjct: 181 WMIGALFLAAEALMDSAWYILQ 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502002|ref|XP_003519811.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/191 (58%), Positives = 142/191 (74%), Gaps = 1/191 (0%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP +GMV+V+LAQ  +M VIK AMS GINKYV++VYS ALS++  L  +   HRSERP L
Sbjct: 12  LPFLGMVLVMLAQSGSMVVIKVAMSDGINKYVMVVYSLALSTILLLPFALFLHRSERPPL 71

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           TFS LC FFLL++FG S QI ++VGI  SS TL++AMLNLIPAFTF+LA+IFR+E+++W 
Sbjct: 72  TFSALCCFFLLAIFGSSGQIMAYVGIDLSSATLASAMLNLIPAFTFILALIFRMEEVHWR 131

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
           + SSQAK LGT  SIGGAFVV  YKGPP I +   S S  +L  S Q++WILGG F   +
Sbjct: 132 HSSSQAKVLGTLISIGGAFVVILYKGPP-IFKTHWSNSSNKLQFSQQINWILGGIFCVGD 190

Query: 192 AFMNSAWFILQ 202
           + + S W+I Q
Sbjct: 191 SIVCSLWYIYQ 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497781|ref|XP_003517736.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 142/190 (74%), Gaps = 1/190 (0%)

Query: 13  PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLT 72
           P +GMV+ +LAQ  +M VIK AM+ GINKYV++VYS ALS++  L  +   HRSERP LT
Sbjct: 13  PFLGMVMAMLAQSGSMVVIKVAMTDGINKYVMVVYSLALSTILLLPFALFLHRSERPPLT 72

Query: 73  FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWEN 132
           FS LCSFFLL+ FG S QI ++VGI  SSPTL++AMLNLIPAFTF+LA+IFR+E+++W++
Sbjct: 73  FSALCSFFLLAFFGSSGQIMAYVGIDLSSPTLASAMLNLIPAFTFILALIFRMEEVHWKH 132

Query: 133 KSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEA 192
            SSQAK LGT  SI GAFVV  YKGPP I +   S S  + L S QL+WILGG F A ++
Sbjct: 133 SSSQAKFLGTIVSIAGAFVVILYKGPP-IFKTHLSNSSNKFLFSQQLNWILGGMFCAGDS 191

Query: 193 FMNSAWFILQ 202
            + S W+I Q
Sbjct: 192 IVCSLWYIYQ 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424736|ref|XP_002266139.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086519|emb|CBI32108.3| unnamed protein product [Vitis vinifera]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/202 (56%), Positives = 151/202 (74%), Gaps = 4/202 (1%)

Query: 1   MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS 60
           MGV MG++  +LP +GMVIV+  QV+NM V K AMS G++ +V+++YS+A+S++  L  S
Sbjct: 1   MGV-MGTV--SLPFLGMVIVVFTQVTNMIVSKMAMSNGLSSFVLVLYSNAISAVILLPLS 57

Query: 61  FLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA 120
            LFHRS RP LTFSILC FFLL++ GC +QIF + G+QYSSPTL +AMLNL+PAFTF+LA
Sbjct: 58  LLFHRSPRPPLTFSILCRFFLLALIGCFAQIFGYAGVQYSSPTLGSAMLNLVPAFTFILA 117

Query: 121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS 180
           +I R+EKL  +  SS AKS+G   S+ GAFVVTFYKGPP++   S S S  + + S Q  
Sbjct: 118 VICRMEKLELKKSSSLAKSVGALVSVAGAFVVTFYKGPPIMFSSSFSDSSNQ-IFSSQSH 176

Query: 181 WILGGFFLAAEAFMNSAWFILQ 202
           W+LGGF LA E+ + S W+ILQ
Sbjct: 177 WVLGGFLLADESLLASMWYILQ 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502250|gb|AFK39191.1| unknown [Medicago truncatula]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/201 (53%), Positives = 146/201 (72%), Gaps = 1/201 (0%)

Query: 3   VDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFL 62
           +++      LP VGM+I +LAQ  +M VIK AM  G+NKYV++VYS  LSS+  L  +  
Sbjct: 5   LNLNGTSKLLPFVGMIISVLAQSGSMVVIKFAMKDGMNKYVMVVYSMGLSSILLLPLALF 64

Query: 63  FHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII 122
            +RS+RP LTFS L SFFLL++ G S+QI ++ GI+ SSPTL++AMLNLIPAFTFVLA+I
Sbjct: 65  INRSQRPPLTFSALWSFFLLALIGSSAQIMTYGGIELSSPTLASAMLNLIPAFTFVLALI 124

Query: 123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182
           FR+E++ W + SSQAK++GT  S+ GAFVV  YKGPP++ ++  S S   L  SP L+WI
Sbjct: 125 FRMERIYWRHFSSQAKAIGTIVSMAGAFVVILYKGPPIL-KIHSSISYNTLQFSPNLNWI 183

Query: 183 LGGFFLAAEAFMNSAWFILQV 203
           LGGF  A ++ ++S W+I QV
Sbjct: 184 LGGFLCAGDSLLSSMWYIYQV 204

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486015|ref|XP_003613295.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355514630|gb|AES96253.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/192 (55%), Positives = 143/192 (74%), Gaps = 1/192 (0%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP VGM+I +LAQ  +M VIK AM  G+NKYV++VYS  LSS+  L  +   +RS+RP L
Sbjct: 260 LPFVGMIISVLAQSGSMVVIKFAMKDGMNKYVMVVYSMGLSSILLLPLALFINRSQRPPL 319

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           TFS L SFFLL++ G S+QI ++ GI+ SSPTL++AMLNLIPAFTFVLA+IFR+E++ W 
Sbjct: 320 TFSALWSFFLLALIGSSAQIMTYGGIELSSPTLASAMLNLIPAFTFVLALIFRMERIYWR 379

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
           + SSQAK++GT  S+ GAFVV  YKGPP++ ++  S S   L  SP L+WILGGF  A +
Sbjct: 380 HFSSQAKAIGTIVSMAGAFVVILYKGPPIL-KIHSSISYNTLQFSPNLNWILGGFLCAGD 438

Query: 192 AFMNSAWFILQV 203
           + ++S W+I QV
Sbjct: 439 SLLSSMWYIYQV 450

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 104/195 (53%), Positives = 137/195 (70%), Gaps = 2/195 (1%)

Query: 8   MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE 67
           M+ ALP VGMVI   AQV  M + K AMSKG++ ++ + YS+AL+SL  L  S L  R+E
Sbjct: 3   MKVALPFVGMVIAECAQVGLMIISKVAMSKGMSSFIFVCYSNALASLILLPFSLLHRRTE 62

Query: 68  RPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
           RP LTFSI+C FFLL +FGC +Q F + GI  SSPTL TAMLNL+P  TF+LA+ FR+EK
Sbjct: 63  RPPLTFSIVCGFFLLGLFGCLAQFFGYAGINLSSPTLGTAMLNLVPGLTFILAVAFRMEK 122

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFF 187
           L+    SS AKS+GT  S+GGAF++T+YKGP ++  L+ S +    LL+   +WI+GG  
Sbjct: 123 LDGRTSSSLAKSMGTIISVGGAFILTYYKGPLVL--LTPSLNSSHQLLTQPSNWIIGGLL 180

Query: 188 LAAEAFMNSAWFILQ 202
           LAA+  M SAW I+Q
Sbjct: 181 LAADCVMTSAWIIIQ 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/200 (52%), Positives = 134/200 (67%), Gaps = 6/200 (3%)

Query: 8   MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE 67
           ++AA P VGMV+   AQV  M + KAAMS G+  ++ ++YS+AL+SL  L  SF  HRSE
Sbjct: 3   LKAAAPFVGMVMAECAQVGLMILSKAAMSDGMTNFIFVLYSNALASLILLPSSFFLHRSE 62

Query: 68  RPQLTFSILCSFFLLSVFGCS-----SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII 122
           RP LTF ILC FFLL +FG +       IF + GI  SS TL TAMLNLIP  TF+LA+ 
Sbjct: 63  RPPLTFPILCGFFLLGLFGYAILIYFDFIFGYAGINLSSATLGTAMLNLIPGLTFILAVA 122

Query: 123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182
           FR+EKL+W++ S+  KS GT  S+ GAF+V +YKGPPL+   S S  P   LLS Q +WI
Sbjct: 123 FRMEKLDWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLLMAPSTSNLPHE-LLSQQQNWI 181

Query: 183 LGGFFLAAEAFMNSAWFILQ 202
           +GG  LA +  M SAW I+Q
Sbjct: 182 IGGLLLAVDCVMASAWLIIQ 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497783|ref|XP_003517737.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/191 (54%), Positives = 138/191 (72%), Gaps = 1/191 (0%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP +GM++ +L Q  +M VIK AM+ G+NKYV++VYS ALSS   L      HRSE P L
Sbjct: 12  LPFLGMLMAMLTQSGSMVVIKFAMTDGMNKYVMVVYSMALSSSILLPFVLFLHRSELPLL 71

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           T   L SFFLL++F  S+ I ++VGI+ SSPTL++A+LN+IPAFTFVLA+IFR+E+++W 
Sbjct: 72  TVPALGSFFLLALFASSAHIMAYVGIELSSPTLASAILNVIPAFTFVLALIFRMEEVHWR 131

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
             SSQAK LGT  SIGGAFVV  YKGPP+    S S +  +L  S Q +WILGG FL A+
Sbjct: 132 YFSSQAKVLGTIVSIGGAFVVILYKGPPIFRTHS-SYTSNKLQFSAQPNWILGGIFLVAD 190

Query: 192 AFMNSAWFILQ 202
           +F++S W+I Q
Sbjct: 191 SFLSSMWYIYQ 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/199 (50%), Positives = 132/199 (66%), Gaps = 1/199 (0%)

Query: 5   MGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH 64
           M    A LP VGMV+   AQ   M + KAAMS G++ +V ++YS+A++ L  L  SFLFH
Sbjct: 1   MARKVAVLPIVGMVMAECAQAGRMILGKAAMSNGMSSFVFVLYSNAIACLILLPSSFLFH 60

Query: 65  RS-ERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIF 123
           RS ERP LT SI+  FFLL +FGC  Q F + GI  SSPTL TAMLNL+P  TF+LAIIF
Sbjct: 61  RSSERPPLTLSIVSGFFLLGLFGCLGQSFCYAGINLSSPTLGTAMLNLVPGLTFILAIIF 120

Query: 124 RLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWIL 183
           R+E ++W++ S+ AKS+GT  SIGGAF+VT YKGP L+  L         +L  Q +W+L
Sbjct: 121 RMENVDWKSYSTLAKSMGTIVSIGGAFIVTCYKGPLLLKALPSVTKSSHQVLLQQSNWVL 180

Query: 184 GGFFLAAEAFMNSAWFILQ 202
           GG  +A +    S+W I+Q
Sbjct: 181 GGLLMAVDCATASSWLIVQ 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.868	0.523	0.420	2e-33
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.773	0.504	0.397	6.8e-30
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.877	0.524	0.355	1.7e-27
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.841	0.536	0.353	2.8e-27
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.877	0.546	0.366	1.2e-26
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.877	0.538	0.356	2.6e-24
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.864	0.510	0.333	8.7e-24
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.782	0.483	0.365	1.8e-23
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.877	0.549	0.346	2.9e-23
TAIR|locus:2125167	365	UMAMIT29 "Usually multiple aci	0.859	0.520	0.321	6.1e-23

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 82/195 (42%), Positives = 107/195 (54%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  LP   +VI+  A V    + KAA  KG++ +V IVYS                RS  
Sbjct:     8 REVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSFRSRT 67

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P + FSIL    LL + GC S I  + GI YSSPTL++A+ NL PAFTF+LA++FR+E 
Sbjct:    68 LPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMES 127

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFF 187
             ++++  SS AK LGT  SIGGAF+VT Y GP +I +                 WILG  F
Sbjct:   128 VSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNPN--WILGAGF 185

Query:   188 LAAEAFMNSAWFILQ 202
             LA E F    W+I+Q
Sbjct:   186 LAVEYFCVPLWYIVQ 200

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 74/186 (39%), Positives = 104/186 (55%)

Query:    17 MVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER-PQLTFSI 75
             MV+   + V    ++KAA SKG++ +V++VYS                RS   P LTFSI
Sbjct:    17 MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query:    76 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSS 135
             LC+  +L +   + QI  + GI+YSSPTLS+AM N+ PAFTF+LA++FR+E ++   KSS
Sbjct:    77 LCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKSS 136

Query:   136 QAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFFLAAEAFMN 195
              AK LGT  SI GA VVT Y GP L+                   WI+GG  LA +  + 
Sbjct:   137 VAKVLGTILSIIGALVVTLYHGPMLMSSHSD--------------WIIGGGLLALQYILV 182

Query:   196 SAWFIL 201
             S  +++
Sbjct:   183 SVSYLV 188

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 71/200 (35%), Positives = 103/200 (51%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  +P   MV V    V +  + KAA  +G++ YV + Y+                RS+R
Sbjct:    17 RDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKR 76

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P     +  + FLL++ G  S I    GI+YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct:    77 LPSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQ 136

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXX-----XXXXXXXXXXXXXWI 182
             +   + ++QAK +GT  SI GA VV  YKGP ++ +                      WI
Sbjct:   137 IVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWI 196

Query:   183 LGGFFLAAEAFMNSAWFILQ 202
             +GG  LA +  + S W+ILQ
Sbjct:   197 IGGLLLATQYLLVSVWYILQ 216

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 69/195 (35%), Positives = 100/195 (51%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  +P   M+ +    V +  + KAA  +G + YV + Y+                RS  
Sbjct:    13 RDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRS 72

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P    S+    FLL++ G +S++    GI+YSSPTLS+A+ NL PAFTF+LAI FR+E+
Sbjct:    73 LPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQ 132

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFF 187
             +   + ++QAK +GT  SI GA V+  YKGP L+                   WI+GG  
Sbjct:   133 VMLRSSATQAKIIGTIVSISGALVIVLYKGPKLL--------VAASFTSFESSWIIGGLL 184

Query:   188 LAAEAFMNSAWFILQ 202
             L  +  + S WFILQ
Sbjct:   185 LGLQFLLLSVWFILQ 199

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 73/199 (36%), Positives = 102/199 (51%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M+      V+   + KAA SKG+N Y  ++YS               +RS  
Sbjct:     9 RDAVLLTAMLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRS 68

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SILC   +L + G +  I  F+GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    69 LPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGP----PLIGEXXXXXXXXXXXXXXXXXWIL 183
              +++ KSS AK +GT  S+ GA VV  Y GP    P                     WI+
Sbjct:   129 ASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWII 188

Query:   184 GGFFLAAEAFMNSAWFILQ 202
             GG  LA +  +    FILQ
Sbjct:   189 GGCLLAIKDTLVPVAFILQ 207

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 71/199 (35%), Positives = 100/199 (50%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M++V  + V    + K A SKG+N Y  + YS               +RS  
Sbjct:    13 REAVFLTAMLVVETSVVGISTLFKFATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSSS 72

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SIL    LL   G    I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    73 LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEK 132

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXXWIL 183
             ++++ +SS AK +GT  S+ GA VV FY GP +                        W++
Sbjct:   133 VSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLI 192

Query:   184 GGFFLAAEAFMNSAWFILQ 202
             GG  L  +    S  FILQ
Sbjct:   193 GGALLTMQGIFVSVSFILQ 211

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 66/198 (33%), Positives = 96/198 (48%)

Query:    12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSERPQL 71
             LP + MV+V +         K AM  G+   +++ Y                 R  RP++
Sbjct:     7 LPFLAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTRPKI 66

Query:    72 TFSILCSFFLLSVFGCS-SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNW 130
             T  IL   F  S+ G + +Q+  FVG+Q SSPT++ A+ NL+PA TF+LA IFR E +  
Sbjct:    67 TLRILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIFRQETVGI 126

Query:   131 ENKSSQAKSLGTFASIGGAFVVTFYKGPPL-IGEXX-----XXXXXXXXXXXXXXXWILG 184
             +  S QAK +GT   + GA V++FY G  + IGE                      + LG
Sbjct:   127 KKASGQAKVIGTLVCVIGAMVLSFYHGHTIGIGESKIHWAYAENITKHGSSSGHSNFFLG 186

Query:   185 GFFLAAEAFMNSAWFILQ 202
              F + A A   +AWFI+Q
Sbjct:   187 PFLIMAAAVSWAAWFIIQ 204

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 65/178 (36%), Positives = 92/178 (51%)

Query:    30 VIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER-PQLTFSILCSFFLLSVFGCS 88
             + K A SKG+N Y  + YS               +RS   P L+ SIL    LL   G  
Sbjct:    31 LFKVATSKGLNIYPFLSYSYLLASLLLLPSLFFTNRSRSLPPLSASILSKIGLLGFLGSM 90

Query:    89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG 148
               I   +GI+YS+PTL++A+ N++PA TF+LA+IFR+EK++++ +SS AK +GT  S+ G
Sbjct:    91 YVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEKVSFKERSSVAKVMGTILSLIG 150

Query:   149 AFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQ 202
             AFVV FY GP +                        W++GG  L  +    S  FILQ
Sbjct:   151 AFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLIGGAILTIQGIFVSVSFILQ 208

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 69/199 (34%), Positives = 95/199 (47%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M+      V    + K A SKG+N Y  + YS                RS  
Sbjct:    10 REAVFLTAMLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRS 69

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SIL    LL + G    I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    70 LPPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEK 129

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXXWIL 183
             ++++ +SS AK +GT  S+ GA VV  Y GP +                        W++
Sbjct:   130 VSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLI 189

Query:   184 GGFFLAAEAFMNSAWFILQ 202
             GG  L       S  FILQ
Sbjct:   190 GGALLTIRDIFVSVSFILQ 208

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2125167 UMAMIT29 "Usually multiple acids move in and out Transporters 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 63/196 (32%), Positives = 95/196 (48%)

Query:    13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSERPQLT 72
             P + M+I  +A  S   ++K A+  G+N  +   Y  A              R  RPQLT
Sbjct:     9 PVIVMLISSVAMGSVNALVKKALDVGVNHMIFGAYRMAISALILVPFSYIWERKTRPQLT 68

Query:    73 FSILCSFFLLSVFGCS-SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKL-NW 130
             F +LC  F+  + G S  Q F  +G+ Y+S T+S A+++++PA TF LA+IFR+E   N 
Sbjct:    69 FMLLCEHFISGLLGASLMQFFFLLGLSYTSATVSMALVSMLPAITFALALIFRIENAQNL 128

Query:   131 ENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXX----XXXWILGGF 186
             ++K+   K +GT   I GA ++TFYKGP L                        W+LG  
Sbjct:   129 KSKAGVLKVMGTLICIMGAMLLTFYKGPELSNPHSHPQARHNNNNNNGHDQTKKWLLGCL 188

Query:   187 FLAAEAFMNSAWFILQ 202
             +L     + S W + Q
Sbjct:   189 YLVIGTVLLSLWMLFQ 204

GO:0016020 "membrane" evidence=IEA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	4e-32

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  118 bits (298), Expect = 4e-32
 Identities = 82/203 (40%), Positives = 113/203 (55%), Gaps = 13/203 (6%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R A+    M+    + V    + K A SKG+N Y  + YS  L+SL  L   F  +RS  
Sbjct: 10  REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS 69

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P L+ SIL    LL   G    I  ++GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK
Sbjct: 70  LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEK 129

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRL---LLSPQLS---- 180
           ++++ +SS AK +GT  S+ GA VV FY GP     +  + SP  L    LSP LS    
Sbjct: 130 VSFKERSSVAKVMGTILSLIGALVVIFYHGP----RVFVASSPPYLNFRQLSPPLSSSNS 185

Query: 181 -WILGGFFLAAEAFMNSAWFILQ 202
            W++GG  L  +    S  FILQ
Sbjct: 186 DWLIGGALLTIQGIFVSVSFILQ 208

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
PLN00411	358	nodulin MtN21 family protein; Provisional	99.96
PRK11272	292	putative DMT superfamily transporter inner membran	99.89
PRK11689	295	aromatic amino acid exporter; Provisional	99.89
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.87
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.87
PRK15430	296	putative chloramphenical resistance permease RarD;	99.87
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.86
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.82
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.81
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.74
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.74
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.69
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.66
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.66
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.48
COG2510	140	Predicted membrane protein [Function unknown]	99.48
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.46
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.35
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.31
PRK11272	292	putative DMT superfamily transporter inner membran	99.3
COG2962	293	RarD Predicted permeases [General function predict	99.21
PRK11689	295	aromatic amino acid exporter; Provisional	99.19
PLN00411	358	nodulin MtN21 family protein; Provisional	99.19
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.13
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.11
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.08
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.07
KOG2765	416	consensus Predicted membrane protein [Function unk	99.05
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.99
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.92
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.92
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.92
PRK15430	296	putative chloramphenical resistance permease RarD;	98.79
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.79
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.71
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.57
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.54
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.48
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.48
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.41
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.21
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.18
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.94
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.9
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.84
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.83
KOG2766	336	consensus Predicted membrane protein [Function unk	97.82
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.75
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.71
KOG1443	349	consensus Predicted integral membrane protein [Fun	97.68
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.53
PRK13499	345	rhamnose-proton symporter; Provisional	97.41
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.38
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.27
COG2076	106	EmrE Membrane transporters of cations and cationic	97.27
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.26
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.24
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.17
PRK11431	105	multidrug efflux system protein; Provisional	96.98
COG2962	293	RarD Predicted permeases [General function predict	96.98
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.87
PRK13499	345	rhamnose-proton symporter; Provisional	96.85
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.79
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.56
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.4
KOG2765	416	consensus Predicted membrane protein [Function unk	96.38
KOG1580	337	consensus UDP-galactose transporter related protei	96.14
KOG1581	327	consensus UDP-galactose transporter related protei	95.85
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	95.8
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.19
KOG1580	337	consensus UDP-galactose transporter related protei	94.18
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	94.11
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	93.28
KOG2922	335	consensus Uncharacterized conserved protein [Funct	92.43
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	91.23
KOG3912	372	consensus Predicted integral membrane protein [Gen	90.98
KOG1582	367	consensus UDP-galactose transporter related protei	90.85
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	89.66
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	89.15
KOG1581	327	consensus UDP-galactose transporter related protei	88.74
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	85.74
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	81.27

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.96  E-value=4.6e-28  Score=214.88  Aligned_cols=203  Identities=38%  Similarity=0.554  Sum_probs=162.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHHHHH
Q 027608            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGC   87 (221)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~g~   87 (221)
                      ++.++|..++..++.+++..++.|.+++.|++|+.+.++|+.+|+++++|+++.++|++ +++.+++++.++.++|++++
T Consensus        10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~   89 (358)
T PLN00411         10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS   89 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999987655432 24446788899999999886


Q ss_pred             HHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCC
Q 027608           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS  167 (221)
Q Consensus        88 ~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~  167 (221)
                      .++.+++.|++||+|++++++.+++|+++++++++++.|+++.+++.++.|++|++++++|+.++...+++.... .+|+
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~-~~~~  168 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV-ASSP  168 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc-cccc
Confidence            677899999999999999999999999999999999766666666666778999999999999887544421100 0000


Q ss_pred             C-----CCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 027608          168 G-----SPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYK  212 (221)
Q Consensus       168 ~-----~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~  212 (221)
                      .     .+..+......++.+|+++.+++++|||+|++++|+..++||+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~  218 (358)
T PLN00411        169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAA  218 (358)
T ss_pred             ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            0     00000011123456799999999999999999999999999875

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.89  E-value=2.2e-21  Score=167.68  Aligned_cols=166  Identities=10%  Similarity=0.018  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 027608           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQI   91 (221)
Q Consensus        13 ~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~~~   91 (221)
                      -.+.++...++||.+++++|...+ ++||.+++++|+.+++++++++...+ | ++ ..+++++++....|.++ ..++.
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~-~-~~-~~~~~~~~~~~~~g~~~~~~~~~   84 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR-G-HP-LPTLRQWLNAALIGLLLLAVGNG   84 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh-C-CC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence            356677889999999999999887 59999999999999999998876542 2 22 23577888888999988 88899


Q ss_pred             HHHHHh-hccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCC
Q 027608           92 FSFVGI-QYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSP  170 (221)
Q Consensus        92 ~~~~gl-~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~  170 (221)
                      +++.+. +++++++++++.++.|+++.+++++ +|||++++      +++|++++++|+.++... +.            
T Consensus        85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~~------------  144 (292)
T PRK11272         85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-GN------------  144 (292)
T ss_pred             HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-cc------------
Confidence            999999 9999999999999999999999986 69999865      689999999999887521 10            


Q ss_pred             CcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 027608          171 RRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFL  209 (221)
Q Consensus       171 ~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~  209 (221)
                            . ++...|+++.+++++|||.|++.+||..++.
T Consensus       145 ------~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~  176 (292)
T PRK11272        145 ------L-SGNPWGAILILIASASWAFGSVWSSRLPLPV  176 (292)
T ss_pred             ------c-ccchHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                  1 1224799999999999999999999986543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.89  E-value=6.6e-22  Score=171.25  Aligned_cols=180  Identities=17%  Similarity=0.093  Sum_probs=136.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HH
Q 027608           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (221)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~   88 (221)
                      +.++++.++.+.++||++++..|.++++ +||+.+.++|+.+|+++++++.   .+   ++.+ ++.++..+.+.++ +.
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~---~~~~-~~~~~~~~~~~l~~~~   73 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GF---PRLR-QFPKRYLLAGGLLFVS   73 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---cc---cccc-cccHHHHHHHhHHHHH
Confidence            3467788999999999999999998875 9999999999999999988752   11   1111 1222344556667 88


Q ss_pred             HHHHHHHHhhc----cchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCC
Q 027608           89 SQIFSFVGIQY----SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL  164 (221)
Q Consensus        89 ~~~~~~~gl~~----t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~  164 (221)
                      ++.+++.|++|    +++++++++.++.|+++.+++++++|||++++      |++|++++++|+.++... +..... .
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~-~  145 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL-A  145 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh-h
Confidence            88888888865    57888999999999999999999999999865      689999999999887632 110000 0


Q ss_pred             CCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 027608          165 SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKA  213 (221)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~~  213 (221)
                              +......+...|+++.++|++|||+|+++.||..+++++..
T Consensus       146 --------~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~  186 (295)
T PRK11689        146 --------ELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNGIT  186 (295)
T ss_pred             --------hhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCCchh
Confidence                    00001112246999999999999999999999988877653

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.87  E-value=1.2e-20  Score=163.62  Aligned_cols=164  Identities=19%  Similarity=0.146  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHHHHH
Q 027608           14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIF   92 (221)
Q Consensus        14 ~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~~~~   92 (221)
                      .+..++++++||.+++++|..++ ++||..+.++|+.++++.++++.  + ++   +.+++   ..+..|++. ..++.+
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~---~~~~~---~~~~~g~~~~~~~~~~   75 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RP---KVPLN---LLLGYGLTISFGQFAF   75 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CC---CCchH---HHHHHHHHHHHHHHHH
Confidence            45678889999999999999887 49999999999999887776653  1 11   12222   345566666 667778


Q ss_pred             HHHHhhc-cchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCC
Q 027608           93 SFVGIQY-SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (221)
Q Consensus        93 ~~~gl~~-t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~  171 (221)
                      ++.+++| .++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++... +.+            
T Consensus        76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~~-~~~------------  136 (299)
T PRK11453         76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIED-SLN------------  136 (299)
T ss_pred             HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhccc-cCC------------
Confidence            8899998 58899999999999999999999999999865      689999999999887521 100            


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 027608          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFY  211 (221)
Q Consensus       172 ~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~  211 (221)
                           ..+....|+++.++++++|+.|++++||..+++++
T Consensus       137 -----~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~  171 (299)
T PRK11453        137 -----GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTR  171 (299)
T ss_pred             -----CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence                 11223479999999999999999999998776643

>TIGR00688 rarD rarD protein

Probab=99.87  E-value=1.1e-20  Score=160.20  Aligned_cols=163  Identities=13%  Similarity=0.047  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCC-----CCCCCHHH-HHHHHHHHHH
Q 027608           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-----RPQLTFSI-LCSFFLLSVF   85 (221)
Q Consensus        12 ~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~-~~~~~~lg~~   85 (221)
                      +++..++++.++||.+++++|. .. ++||.++.++|+.+|+++++++...+++++     .++.++++ +....+.|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            4778899999999999999998 45 499999999999999988877654332211     11122232 3345556666


Q ss_pred             HHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCC
Q 027608           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS  165 (221)
Q Consensus        86 g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~  165 (221)
                      ...++.+++++++++++++|+++.++.|+++++++++++|||++++      +++|++++++|+.++...++        
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~--------  145 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG--------  145 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC--------
Confidence            6889999999999999999999999999999999999999999875      68999999999988753211        


Q ss_pred             CCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027608          166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFN  207 (221)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~  207 (221)
                                  +.+     .+.+++++||+.|.+.+|+..+
T Consensus       146 ------------~~~-----~~~l~aa~~~a~~~i~~~~~~~  170 (256)
T TIGR00688       146 ------------SLP-----WEALVLAFSFTAYGLIRKALKN  170 (256)
T ss_pred             ------------Cch-----HHHHHHHHHHHHHHHHHhhcCC
Confidence                        011     3467899999999999998764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.87  E-value=5.7e-21  Score=165.44  Aligned_cols=166  Identities=11%  Similarity=0.009  Sum_probs=131.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCC--CC-CCHHHHHHHHHHHH
Q 027608            8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--PQ-LTFSILCSFFLLSV   84 (221)
Q Consensus         8 ~~~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~--~~-~~~~~~~~~~~lg~   84 (221)
                      +++.++++.++.+.++||.+++++|.. . ++||.++.++|+.++.++++++...+++...  ++ .+++++. ....+.
T Consensus         4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   80 (296)
T PRK15430          4 KQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSA   80 (296)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHH
Confidence            355678999999999999999999975 4 5999999999999999888877544221110  00 1234332 334677


Q ss_pred             HH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCC
Q 027608           85 FG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGE  163 (221)
Q Consensus        85 ~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~  163 (221)
                      ++ +.++.++++|++++++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++...++      
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~------  148 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG------  148 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC------
Confidence            77 899999999999999999999999999999999999999999875      68999999999988752211      


Q ss_pred             CCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027608          164 LSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFN  207 (221)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~  207 (221)
                                     ..    ..+.++++++||.|++..|+..+
T Consensus       149 ---------------~~----~~~~l~aa~~~a~~~i~~r~~~~  173 (296)
T PRK15430        149 ---------------SL----PIIALGLAFSFAFYGLVRKKIAV  173 (296)
T ss_pred             ---------------Cc----cHHHHHHHHHHHHHHHHHHhcCC
Confidence                           01    14577899999999999988754

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.86  E-value=1.4e-20  Score=159.05  Aligned_cols=156  Identities=14%  Similarity=0.049  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccch
Q 027608           24 QVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSP  102 (221)
Q Consensus        24 wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a  102 (221)
                      ||.+++..|..++++.||....+.|+..+.+++.++...  +     .+++++.+.+..|.++ .+++.+++.|++|+++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            899999999998877899999999999998888876432  2     2356777888999999 9999999999999999


Q ss_pred             hHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhH
Q 027608          103 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI  182 (221)
Q Consensus       103 ~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  182 (221)
                      ++++++.++.|+++.+++.+++|||++++      +++|++++++|+.++... ++                   .++..
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~~-~~-------------------~~~~~  127 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLSD-GN-------------------LSINP  127 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhccC-Cc-------------------ccccH
Confidence            99999999999999999999999999865      689999999999887521 10                   11235


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 027608          183 LGGFFLAAEAFMNSAWFILQVWPFNFLFYK  212 (221)
Q Consensus       183 ~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~  212 (221)
                      .|+++.++++++|+.|.++.|+..+++++.
T Consensus       128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~  157 (260)
T TIGR00950       128 AGLLLGLGSGISFALGTVLYKRLVKKEGPE  157 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhcCCch
Confidence            799999999999999999999999888754

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.82  E-value=1.5e-18  Score=150.06  Aligned_cols=169  Identities=9%  Similarity=-0.004  Sum_probs=134.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHH
Q 027608           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSS   89 (221)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~   89 (221)
                      +.+++..++++.++|+.+.+++|.+.++ +||..+.++|+.+|+++++++..  .++  ++.++|+++..+..|++....
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~--~~~--~~~~~~~~~~~~~~g~~~~~~   84 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFK--PWR--LRFAKEQRLPLLFYGVSLGGM   84 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHh--HHh--ccCCHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999885 99999999999999999887642  122  234578888888888877677


Q ss_pred             HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCC
Q 027608           90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGS  169 (221)
Q Consensus        90 ~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~  169 (221)
                      +.+++++++|++++.++++.++.|+++.+++    +||.+        +..++.++++|+.++.. .+.+          
T Consensus        85 ~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~-~~~~----------  141 (293)
T PRK10532         85 NYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLP-LGQD----------  141 (293)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeee-cCCC----------
Confidence            7889999999999999999999999998876    24432        34567888999988752 1211          


Q ss_pred             CCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 027608          170 PRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKA  213 (221)
Q Consensus       170 ~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~~  213 (221)
                             .+.....|+++.++++++||.|++..||..+++++..
T Consensus       142 -------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~  178 (293)
T PRK10532        142 -------VSHVDLTGAALALGAGACWAIYILSGQRAGAEHGPAT  178 (293)
T ss_pred             -------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Confidence                   0111247999999999999999999999988887644

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.81  E-value=2.9e-18  Score=148.67  Aligned_cols=157  Identities=14%  Similarity=0.076  Sum_probs=128.1

Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHh
Q 027608           29 EVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAM  108 (221)
Q Consensus        29 v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i  108 (221)
                      +.-|.++++--+|..+++.|+.++.+.+.+... ...+++++.+++|+++++.+|++++.++.+.+.+++|+++++++++
T Consensus        19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li   97 (302)
T TIGR00817        19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTI   97 (302)
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            467888875367999999999999877665421 1122234567899999999999998888999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHH
Q 027608          109 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL  188 (221)
Q Consensus       109 ~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~  188 (221)
                      .+++|+++.+++++++|||++++      +++|++++++|+.+.. . +                   +.+....|+++.
T Consensus        98 ~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~-~-~-------------------~~~~~~~G~~~~  150 (302)
T TIGR00817        98 KAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS-D-T-------------------ELSFNWAGFLSA  150 (302)
T ss_pred             HhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc-C-C-------------------cccccHHHHHHH
Confidence            99999999999999999999865      6899999999997653 1 1                   011224699999


Q ss_pred             HHHHHHHHHHHHHHhhhhc--cccccc
Q 027608          189 AAEAFMNSAWFILQVWPFN--FLFYKA  213 (221)
Q Consensus       189 l~aa~~~a~y~i~~k~~~~--~~~~~~  213 (221)
                      ++|+++|++|+++.||..+  ++++..
T Consensus       151 l~a~~~~a~~~v~~k~~~~~~~~~~~~  177 (302)
T TIGR00817       151 MISNITFVSRNIFSKKAMTIKSLDKTN  177 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCccc
Confidence            9999999999999999988  676654

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.74  E-value=3.3e-16  Score=138.92  Aligned_cols=153  Identities=15%  Similarity=0.107  Sum_probs=123.3

Q ss_pred             HHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHHH-HHHHHHHHHHhhccchh
Q 027608           28 MEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRSERPQL--TFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPT  103 (221)
Q Consensus        28 ~v~~K~~~~~~~~-p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a~  103 (221)
                      .+..|.+++. +| |+.+..+|++++.++...+.... .+++++.  .+++++.++.+|+++ .. +...+.|+++++++
T Consensus        65 ~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~svs  141 (350)
T PTZ00343         65 VVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATG-FRKIPRIKSLKLFLKNFLPQGLCHLFV-HFGAVISMGLGAVS  141 (350)
T ss_pred             HHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccHH
Confidence            4558888875 99 99999999999987765543221 2222333  345788999999999 55 45577999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHH
Q 027608          104 LSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWIL  183 (221)
Q Consensus       104 ~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (221)
                      .++++.++.|++++++++++++||++++      ++.|++++++|+.+.+.  ++                  .+. ...
T Consensus       142 ~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~~------------------~~~-~~~  194 (350)
T PTZ00343        142 FTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--KE------------------LHF-TWL  194 (350)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--cc------------------chh-HHH
Confidence            9999999999999999999999999865      68999999999998752  10                  112 357


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027608          184 GGFFLAAEAFMNSAWFILQVWPFNFLF  210 (221)
Q Consensus       184 G~ll~l~aa~~~a~y~i~~k~~~~~~~  210 (221)
                      |+++.++|+++|+.|+++.|+..++++
T Consensus       195 G~~~~l~s~~~~a~~~i~~k~~~~~~~  221 (350)
T PTZ00343        195 AFWCAMLSNLGSSLRSIFAKKTMKNKS  221 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999998765

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.74  E-value=1.6e-16  Score=136.48  Aligned_cols=169  Identities=11%  Similarity=-0.017  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhh-hCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 027608           14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH-RSERPQLTFSILCSFFLLSVFG-CSSQI   91 (221)
Q Consensus        14 ~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~g-~~~~~   91 (221)
                      .+..+.++++|+...+..|...++ -++.  .++++..+++++.|+...+. +..+++.+ ++++.....+.++ ..++.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLP-ATFWLLLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcc-hhhHHHHHHHHHHHHHHHH
Confidence            356678899999999999976554 3443  47777888888888776532 22223233 4444555566666 99999


Q ss_pred             HHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCC
Q 027608           92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (221)
Q Consensus        92 ~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~  171 (221)
                      +++.|++++++++++.+.++.|+++.++++++++||++++      +++|+.+++.|+.++... +.             
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~-~~-------------  138 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLS-RF-------------  138 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhcc-cc-------------
Confidence            9999999999999999999999999999999999999875      689999999999887532 10             


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 027608          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYK  212 (221)
Q Consensus       172 ~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~  212 (221)
                           ... ...|+.+.++++++|++|+++.|+..++.++.
T Consensus       139 -----~~~-~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~  173 (281)
T TIGR03340       139 -----AQH-RRKAYAWALAAALGTAIYSLSDKAAALGVPAF  173 (281)
T ss_pred             -----ccc-chhHHHHHHHHHHHHHHhhhhccccccchhcc
Confidence                 011 13588899999999999999998876666543

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.69  E-value=3.1e-16  Score=117.28  Aligned_cols=124  Identities=18%  Similarity=0.334  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 027608           22 LAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYS  100 (221)
Q Consensus        22 ~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t  100 (221)
                      ++||.+.++.|...++ .||....++|+..+++ ++++....+++...+.+.+++......|.++ ..++.+++.+++++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            4799999999998875 9999999999999998 6666555444333456778888999999998 99999999999999


Q ss_pred             chhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608          101 SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus       101 ~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      +++.++.+.++.|+++.++++++++|+++++      +++|+++.+.|+++++
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875      6999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.66  E-value=2.3e-14  Score=121.58  Aligned_cols=174  Identities=18%  Similarity=0.211  Sum_probs=133.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HH
Q 027608           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (221)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~   88 (221)
                      ........+...+.|+.+....|...+...++....+.|+..+.++..+.... ++....+ ..+++++..+.+.++ ..
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~   82 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRP-ALRPWLLLLLLALLGLAL   82 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccc-cccchHHHHHHHHHHHHH
Confidence            34566777788899999999999987643677777777999998885444321 1111111 122245667777777 99


Q ss_pred             HHHHHHHHhhccchhHHHHhhhhhHHHHHHHHH-HHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCC
Q 027608           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI-IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS  167 (221)
Q Consensus        89 ~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~-l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~  167 (221)
                      ++.+++.++++++++.++.+.++.|+++.+++. ++++||++++      ++.|+++++.|++++...++.         
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~---------  147 (292)
T COG0697          83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG---------  147 (292)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc---------
Confidence            999999999999999999999999999999997 7779999865      689999999999988632110         


Q ss_pred             CCCCcccCCCCch-hHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 027608          168 GSPRRLLLSPQLS-WILGGFFLAAEAFMNSAWFILQVWPFNFLFY  211 (221)
Q Consensus       168 ~~~~~~~~~~~~~-~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~  211 (221)
                                ..+ ...|+++.++++++|++|.+..|+.. +.++
T Consensus       148 ----------~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~  181 (292)
T COG0697         148 ----------GGILSLLGLLLALAAALLWALYTALVKRLS-RLGP  181 (292)
T ss_pred             ----------chhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCh
Confidence                      111 46899999999999999999999887 4444

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.66  E-value=1.4e-14  Score=127.12  Aligned_cols=173  Identities=17%  Similarity=0.153  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027608           21 LLAQVSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRS-ERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQ   98 (221)
Q Consensus        21 ~~~wg~~~v~~K~~~~~~~~-p~~l~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~   98 (221)
                      +++=.++...+....+.+.+ |..-.+.-+..-.++..+...+++++ +..+..+++|++++++|++-+..+++.+.|++
T Consensus        22 sl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~  101 (334)
T PF06027_consen   22 SLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQ  101 (334)
T ss_pred             HHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444555555554444444 55555555554455555554443222 22223356778888899877999999999999


Q ss_pred             ccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCC
Q 027608           99 YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQ  178 (221)
Q Consensus        99 ~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~  178 (221)
                      ||+.+.+.++..+.-.++++++++++|||.++.      |++|++++++|+.+++..+....            +.+.++
T Consensus       102 yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~------------~~~~~~  163 (334)
T PF06027_consen  102 YTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSG------------SDSSSG  163 (334)
T ss_pred             cccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccccc------------ccCCCC
Confidence            999999999999988899999999999999875      79999999999988875543210            011234


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 027608          179 LSWILGGFFLAAEAFMNSAWFILQVWPFNFLFY  211 (221)
Q Consensus       179 ~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~  211 (221)
                      ++...||++++++++.||+|+++++++.+++|.
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~  196 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAPR  196 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence            566899999999999999999999999998764

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.48  E-value=2.4e-12  Score=108.69  Aligned_cols=132  Identities=13%  Similarity=0.118  Sum_probs=111.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH
Q 027608            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGIN--KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG   86 (221)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~--p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g   86 (221)
                      .+..+....++++++|+.+.+..|...++ .+  +..+..+|+.++.+++.|+.+..++.  +..+.+++..++.+|.++
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG  201 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence            34568889999999999999999998753 66  44566678999999999887653322  234567888889999999


Q ss_pred             -HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhH
Q 027608           87 -CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA  149 (221)
Q Consensus        87 -~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv  149 (221)
                       ...+.+++.++++++++.++.+.++.|+++.++++++++|+++.+      +++|..+.+.|+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence             899999999999999999999999999999999999999999865      689999999886

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.48  E-value=4.2e-13  Score=100.89  Aligned_cols=133  Identities=14%  Similarity=0.152  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHHHHHHHHH
Q 027608           14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERP-QLTFSILCSFFLLSVFGCSSQIF   92 (221)
Q Consensus        14 ~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~lg~~g~~~~~~   92 (221)
                      ..+.++++++||...++.|++++ ++||-.-++.|-.+...++..+++..++.+.+ ..+.|.|..+.+-|+-+...-.+
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~   83 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLL   83 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHH
Confidence            46778899999999999999997 59999999999999888888777654432221 24678888888888766888999


Q ss_pred             HHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        93 ~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      ||.++|.-+++...-+-.+.|+++.++++++++||+|.+      +++|+++..+|+++++
T Consensus        84 Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          84 YFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            999999999999999999999999999999999999875      6899999999998764

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.46  E-value=4.9e-12  Score=109.52  Aligned_cols=178  Identities=13%  Similarity=0.032  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHHHHHHHH
Q 027608           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLT-FSILCSFFLLSVFGCSSQI   91 (221)
Q Consensus        13 ~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~g~~~~~   91 (221)
                      +++..++++++||.+.+..|...  +.++.++.  |..++.+++..+.... |+  ++.+ ++.+..-++-|.+-...|.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~-~~--~~~~~~~~~~~g~l~G~~w~ig~~   74 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF-VL--PEFWALSIFLVGLLSGAFWALGQI   74 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH-hC--CcccccHHHHHHHHHHHHHHhhhh
Confidence            35677889999999999999853  68887775  7888887776654442 22  1122 3333333344444477889


Q ss_pred             HHHHHhhccchhHHHHhhh-hhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCC
Q 027608           92 FSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSP  170 (221)
Q Consensus        92 ~~~~gl~~t~a~~as~i~~-~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~  170 (221)
                      +++.++++++.+.|-.+.+ +.|++..+.+.+++|||.+.++.  ...++|+++.++|++++...++++.          
T Consensus        75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~--~~~~~g~~l~l~G~~l~~~~~~~~~----------  142 (290)
T TIGR00776        75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQT--LLGLLALILIIIGVYLTSRSKDKSA----------  142 (290)
T ss_pred             hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHH--HHHHHHHHHHHHhHheEEecccccc----------
Confidence            9999999999999988887 88999999999999999876521  1228899999999988753321110          


Q ss_pred             CcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 027608          171 RRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKAQ  214 (221)
Q Consensus       171 ~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~~~  214 (221)
                         .+.+..+...|.++.++++++|+.|.+..|..  ++++...
T Consensus       143 ---~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~  181 (290)
T TIGR00776       143 ---GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVDGLSV  181 (290)
T ss_pred             ---ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCCccee
Confidence               00000233579999999999999999999876  3666654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.35  E-value=5.7e-12  Score=94.21  Aligned_cols=103  Identities=21%  Similarity=0.338  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhCC--CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHH
Q 027608           46 VYSDALSSLFFLFCSFLFHRSE--RPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII  122 (221)
Q Consensus        46 ~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l  122 (221)
                      .+|+..+.+++..+...+++.+  .+..++|++.+....|.++ ..++.++++|+++++ +..+.+.++.|+++.+++.+
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            5799999998888776633211  1223345667777889988 799999999999999 48889999999999999999


Q ss_pred             HhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608          123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (221)
Q Consensus       123 ~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  155 (221)
                      ++|||++.+      ++.|++++++|++++...
T Consensus        81 ~~~er~~~~------~~~a~~l~~~Gv~li~~~  107 (113)
T PF13536_consen   81 FFKERLSPR------RWLAILLILIGVILIAWS  107 (113)
T ss_pred             HhcCCCCHH------HHHHHHHHHHHHHHHhhh
Confidence            999999865      689999999999998743

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.31  E-value=1.5e-10  Score=100.10  Aligned_cols=135  Identities=13%  Similarity=0.067  Sum_probs=110.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHH
Q 027608           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSS   89 (221)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~   89 (221)
                      ..+.+..+.++++|+.+.+..|...+ +.+|..... -..++++++.|+......  ....+...+...+.+|+++ .+.
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~  222 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGA-EHGPATVAI-GSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALP  222 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHH-HHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHH
Confidence            45788899999999999999999765 478887754 446667777777654322  1223445566677899999 999


Q ss_pred             HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608           90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (221)
Q Consensus        90 ~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  155 (221)
                      +.++++++++.+|+.++.+.++.|+++.++++++++|+++..      +++|.++.+.|+++....
T Consensus       223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999875      699999999999887643

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.30  E-value=1.9e-10  Score=99.49  Aligned_cols=136  Identities=15%  Similarity=0.027  Sum_probs=113.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHH
Q 027608           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSS   89 (221)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~   89 (221)
                      ..+.+..++++++|+...+..|... . -++....+++..++++++.++....+.......+.++|..+.++|+++ .+.
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~  226 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA  226 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence            4578889999999999999999853 2 345667788999999888887654332211113567888899999999 999


Q ss_pred             HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhh
Q 027608           90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (221)
Q Consensus        90 ~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  154 (221)
                      +.++++++++.++++++++.++.|++++++++++++|+++..      +++|.++.+.|++++..
T Consensus       227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999875      69999999999988753

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.21  E-value=1.4e-09  Score=92.63  Aligned_cols=163  Identities=15%  Similarity=0.077  Sum_probs=125.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCC-CC--CCHHHHHHHHHHHHHH
Q 027608           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER-PQ--LTFSILCSFFLLSVFG   86 (221)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~-~~--~~~~~~~~~~~lg~~g   86 (221)
                      ..++++..+.+.++||..+...|.. + ..|+.++...|..-+..+++.+....++.+. .+  .++|.+..+.+.+.+-
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li   82 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI   82 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            3578899999999999999999974 5 4999999999999998887776554333221 11  1234455555556655


Q ss_pred             HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCC
Q 027608           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (221)
Q Consensus        87 ~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~  166 (221)
                      ..+-..|.|+.++-..-.+|+=.+++|++.++++.+++|||+++      .|++.++++.+||.......|+        
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g~--------  148 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLGS--------  148 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcCC--------
Confidence            88888999999999999999999999999999999999999975      5799999999999887654331        


Q ss_pred             CCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 027608          167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWP  205 (221)
Q Consensus       167 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~  205 (221)
                                  ..| .    .+.=+++|+.|-.+-|++
T Consensus       149 ------------lpw-v----al~la~sf~~Ygl~RK~~  170 (293)
T COG2962         149 ------------LPW-V----ALALALSFGLYGLLRKKL  170 (293)
T ss_pred             ------------CcH-H----HHHHHHHHHHHHHHHHhc
Confidence                        222 1    234578999999884443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.19  E-value=1e-09  Score=94.99  Aligned_cols=132  Identities=16%  Similarity=0.110  Sum_probs=102.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHH
Q 027608           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQ   90 (221)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~   90 (221)
                      ..+.++.+.++++|+.+.+..|...+ +.+|.....   ..+.+.+.+.....+ ......+.+.+..+++.|+...+.+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~t~~~~  229 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAAAMGFGY  229 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHHHHHHHH
Confidence            34788999999999999999999654 578876532   334444444333322 1112345677777777775338899


Q ss_pred             HHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        91 ~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      .++++++++++|+.++.+.++.|++..++++++++|+++..      +++|.++.+.|+++..
T Consensus       230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence            99999999999999999999999999999999999999875      6899999999998765

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.19  E-value=1.4e-09  Score=96.95  Aligned_cols=137  Identities=11%  Similarity=0.119  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhhCCC----CCCCHHHHHHHHHHHHHHH
Q 027608           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINK-YVIIVYSDALSSLFFLFCSFLFHRSER----PQLTFSILCSFFLLSVFGC   87 (221)
Q Consensus        13 ~~l~l~~~~~~wg~~~v~~K~~~~~~~~p-~~l~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~lg~~g~   87 (221)
                      +...++.++++|+.+.+..|..... .|| ....++...++++.+.+.....++...    ...+.. ...++..|+...
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t~  267 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIITS  267 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHHH
Confidence            5677888999999999999987664 654 466777777777666655554433211    111222 223445555446


Q ss_pred             HHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccC
Q 027608           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKG  157 (221)
Q Consensus        88 ~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g  157 (221)
                      +.+.++++++++.+|+.++++.++.|++++++++++++|++++.      +++|.++.+.|+++....+.
T Consensus       268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~~  331 (358)
T PLN00411        268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGKA  331 (358)
T ss_pred             HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhhh
Confidence            67889999999999999999999999999999999999999875      68999999999998875443

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.13  E-value=5.2e-09  Score=90.74  Aligned_cols=136  Identities=14%  Similarity=0.141  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHHHHHHHHhhhCC-----CCCCCHHHHHHHHHH
Q 027608           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINK---YVIIVYSDALSSLFFLFCSFLFHRSE-----RPQLTFSILCSFFLL   82 (221)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p---~~l~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~l   82 (221)
                      ..+.++.+.++++|+.+.+..|...++ .++   .....+-..++.+.+.+.....+...     ....+.++|..++.+
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  220 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence            457888999999999999999986543 332   23334444444443333332222211     123456788899999


Q ss_pred             HHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           83 SVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        83 g~~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      |+++ .+.+.+++.++++.++++++.+..+.|++..++++++++|+++..      +++|.++.++|+.+..
T Consensus       221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            9999 999999999999999999999999999999999999999999875      6899999999998765

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.11  E-value=7.1e-09  Score=86.69  Aligned_cols=159  Identities=11%  Similarity=0.104  Sum_probs=120.6

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 027608           13 PSVGMVIVLL-AQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQI   91 (221)
Q Consensus        13 ~~l~l~~~~~-~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~   91 (221)
                      +++.+..++. +.++. -+.|..... +.|...+.+|..+++++++++  ++.+  +.+.+++++..++..|..-..-|.
T Consensus        13 p~~~ll~amvsiq~Ga-s~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l--~RPw--r~r~~~~~~~~~~~yGvsLg~MNl   86 (292)
T COG5006          13 PILALLVAMVSIQSGA-SFAKSLFPL-VGAAGVTALRLAIAALILLAL--FRPW--RRRLSKPQRLALLAYGVSLGGMNL   86 (292)
T ss_pred             cHHHHHHHHHHHHhhH-HHHHHHccc-cChhhHHHHHHHHHHHHHHHH--hhHH--HhccChhhhHHHHHHHHHHHHHHH
Confidence            4666655543 44444 467777765 999999999999999999876  3332  234678899999999987677788


Q ss_pred             HHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCC
Q 027608           92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (221)
Q Consensus        92 ~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~  171 (221)
                      +||.+++..+-+.+..+..+-|+.+.+++-    .|        .+..+-+.+++.|..++. ..+++.           
T Consensus        87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr--------~~d~vwvaLAvlGi~lL~-p~~~~~-----------  142 (292)
T COG5006          87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS----RR--------LRDFVWVALAVLGIWLLL-PLGQSV-----------  142 (292)
T ss_pred             HHHHHHHhccchhhhhhhhccHHHHHHHhc----cc--------hhhHHHHHHHHHHHHhhe-eccCCc-----------
Confidence            999999999999999999999999876641    11        235677889999998875 223211           


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027608          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFN  207 (221)
Q Consensus       172 ~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~  207 (221)
                           ...| ..|..+.+++..||+.|.+..||.-+
T Consensus       143 -----~~lD-p~Gv~~Al~AG~~Wa~YIv~G~r~g~  172 (292)
T COG5006         143 -----WSLD-PVGVALALGAGACWALYIVLGQRAGR  172 (292)
T ss_pred             -----CcCC-HHHHHHHHHHhHHHHHHHHHcchhcc
Confidence                 1222 58999999999999999999998865

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.08  E-value=1.6e-09  Score=93.98  Aligned_cols=140  Identities=16%  Similarity=0.122  Sum_probs=106.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC---------CHHHHHH-
Q 027608           10 AALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL---------TFSILCS-   78 (221)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~-~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~---------~~~~~~~-   78 (221)
                      +..+.+..++++++|+...+..|...++ ++||..+.++....+++.++|+....+.......         ....... 
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence            3558888999999999999999997651 4899999999999999999998765432110000         0011111 


Q ss_pred             HHHHHHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608           79 FFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (221)
Q Consensus        79 ~~~lg~~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  155 (221)
                      .+..+... ...+.+++.++++++|+.+++..++.|+++.++++++++|+++.+      +++|.++.++|+.+....
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~~  294 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSRV  294 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHHH
Confidence            22233323 444567788999999999999999999999999999999999875      689999999999887643

specificities overlap.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.07  E-value=2e-08  Score=87.33  Aligned_cols=165  Identities=15%  Similarity=0.098  Sum_probs=122.9

Q ss_pred             HHHHHHHh-CCCC--hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 027608           29 EVIKAAMS-KGIN--KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLS  105 (221)
Q Consensus        29 v~~K~~~~-~~~~--p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~a  105 (221)
                      +..+.... ....  |..+++.++....++-.+.....+   .++.+++.++.++..+++..+...+.+.+++|.|...-
T Consensus        17 ~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~   93 (303)
T PF08449_consen   17 ILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK---FPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQ   93 (303)
T ss_pred             HHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc---ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence            44444333 2344  889999999998877766543322   12223445667788888778889999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHH
Q 027608          106 TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGG  185 (221)
Q Consensus       106 s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~  185 (221)
                      .++-...|+.+++++.+++++|.+++      |+.++++..+|+++....+.....           ..+....++..|+
T Consensus        94 ~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~-----------~~~~~~~~~~~G~  156 (303)
T PF08449_consen   94 IVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS-----------SSNSSSFSSALGI  156 (303)
T ss_pred             HHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeeccccccc-----------ccccccccchhHH
Confidence            99999999999999999999998865      689999999999887654332110           0111122234599


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccc
Q 027608          186 FFLAAEAFMNSAWFILQVWPFNFLFYKA  213 (221)
Q Consensus       186 ll~l~aa~~~a~y~i~~k~~~~~~~~~~  213 (221)
                      ++++++.++-+.+.++|+|+.++|+...
T Consensus       157 ~ll~~sl~~~a~~~~~qe~~~~~~~~~~  184 (303)
T PF08449_consen  157 ILLLLSLLLDAFTGVYQEKLFKKYGKSP  184 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence            9999999999999999999999887643

; GO: 0055085 transmembrane transport

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.05  E-value=8.3e-10  Score=96.67  Aligned_cols=113  Identities=20%  Similarity=0.239  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCC
Q 027608           79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP  158 (221)
Q Consensus        79 ~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~  158 (221)
                      .+....+-+..++.++.++++|+++..+++.++.-+||..++.++..||+|+.      |.+++.++++|+++++..+..
T Consensus       162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~  235 (416)
T KOG2765|consen  162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSK  235 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccc
Confidence            34444545899999999999999999999999999999999999999999875      799999999999988744221


Q ss_pred             CCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027608          159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLF  210 (221)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~  210 (221)
                      .             .++.......+|+++.+.+|+.||+|+++.||-..+..
T Consensus       236 ~-------------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg  274 (416)
T KOG2765|consen  236 Q-------------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEG  274 (416)
T ss_pred             c-------------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            1             01223445579999999999999999999998887764

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.99  E-value=3.6e-09  Score=90.90  Aligned_cols=133  Identities=15%  Similarity=0.038  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH
Q 027608           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKY----VIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG   86 (221)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~----~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g   86 (221)
                      .++....+.++++|+.+.+..|...+ +.+|.    ....+.+.+.++.+.+.....+++. ...+...+..+...+.+.
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  220 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS-MFPYARQILPSATLGGLM  220 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHHHHHHHH
Confidence            34566778889999999999987533 34443    2223333333222222221111111 111223344556677777


Q ss_pred             -HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608           87 -CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (221)
Q Consensus        87 -~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l  151 (221)
                       .+.+.++++++++.+++.++.+.++.|++..++++++++|++++.      +++|.++.++|+.+
T Consensus       221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence             889999999999999999999999999999999999999999875      68999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.92  E-value=9.3e-08  Score=74.35  Aligned_cols=132  Identities=17%  Similarity=0.259  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhCCC-C---CC-------CHHHH
Q 027608           14 SVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSER-P---QL-------TFSIL   76 (221)
Q Consensus        14 ~l~l~~~~~~wg~~~v~~K~~~~~------~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~-~---~~-------~~~~~   76 (221)
                      +...+.+.++-+...+..|..++.      ..+|.++..+-...+.++++|..+..++... +   ..       +.+.+
T Consensus         2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T PF03151_consen    2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFI   81 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHH
Confidence            567788899999999999988766      6899999999999999999998877654331 0   01       12334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608           77 CSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (221)
Q Consensus        77 ~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l  151 (221)
                      ..++..|++++..+...+.-+++++|...++..+.-.+++.+.++++++|+++.+      +++|+++++.|+++
T Consensus        82 ~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   82 FLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            4455566666899999999999999999999999999999999999999999875      69999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.92  E-value=9.5e-08  Score=84.88  Aligned_cols=138  Identities=16%  Similarity=0.094  Sum_probs=102.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhCCCC--------CC---C
Q 027608           10 AALPSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSERP--------QL---T   72 (221)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~------~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~--------~~---~   72 (221)
                      ++.+.+..++++++|+...+..|..+++      .+++..+..+-..+++++++|+....+.....        ..   .
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            3568889999999999999999998753      25677777777889999999987644321100        00   1


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608           73 FSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (221)
Q Consensus        73 ~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l  151 (221)
                      .......++.+.+. .+++.+.+.++++++|.++++..++-|+++.++++++++|+++..      +++|.++.+.|+++
T Consensus       272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l  345 (350)
T PTZ00343        272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL  345 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence            11111222223223 444555557999999999999999999999999999999999875      69999999999987


Q ss_pred             hh
Q 027608          152 VT  153 (221)
Q Consensus       152 i~  153 (221)
                      -.
T Consensus       346 Ys  347 (350)
T PTZ00343        346 YS  347 (350)
T ss_pred             Hh
Confidence            54

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.92  E-value=2.9e-10  Score=95.69  Aligned_cols=178  Identities=13%  Similarity=0.104  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 027608           14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFS   93 (221)
Q Consensus        14 ~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~   93 (221)
                      ..++.++ ..+.++.++.+..++  .+|.+..-.|+..-.++..|..++......-+...|  +++++-|+.|+......
T Consensus        40 l~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~tgvmlm  114 (346)
T KOG4510|consen   40 LLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGFTGVMLM  114 (346)
T ss_pred             ceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhhhHHHHH
Confidence            3344444 777777777777653  799999999977777766665544222111111122  25667788884445566


Q ss_pred             HHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcc
Q 027608           94 FVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRL  173 (221)
Q Consensus        94 ~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~  173 (221)
                      |++++|.+-+.|++|+...|+||.++++.++|||.|.      .+..|..+.+.|+++++..   ++-+..+.    .+.
T Consensus       115 yya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~------~eaL~s~itl~GVVLIvRP---pFlFG~~t----~g~  181 (346)
T KOG4510|consen  115 YYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTK------FEALGSLITLLGVVLIVRP---PFLFGDTT----EGE  181 (346)
T ss_pred             HHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcH------HHHHHHHHhhheEEEEecC---CcccCCCc----ccc
Confidence            7799999999999999999999999999999999874      5789999999999998732   22111100    000


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 027608          174 LLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFL  209 (221)
Q Consensus       174 ~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~  209 (221)
                      ..+..+....|.+..+.+++.-|.-.|+-|++=|+.
T Consensus       182 ~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~  217 (346)
T KOG4510|consen  182 DSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA  217 (346)
T ss_pred             ccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc
Confidence            011112334577777777777666666667765543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.79  E-value=2.8e-07  Score=79.90  Aligned_cols=131  Identities=9%  Similarity=-0.004  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q 027608           15 VGMVIVLLAQVSNMEVIKAAMSKG-INKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGCSSQIF   92 (221)
Q Consensus        15 l~l~~~~~~wg~~~v~~K~~~~~~-~~p~~l~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~g~~~~~~   92 (221)
                      ...+.++++|+.+.+..|....+. .++.....+-..++...+.++.  ..... ....+...+..+...|+...+.+.+
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~  229 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA--DSSTSHMGQNPMSLNLLLIAAGIVTTVPLLC  229 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc--cCCcccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            346678899999999998853221 2223333334444433332221  10000 0111222333444456544888999


Q ss_pred             HHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        93 ~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      ++.++++.+|+.++.+.++.|++..++++++++|+++..      +++|.++.++|+.++.
T Consensus       230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999875      6899999988887765

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.79  E-value=5.4e-07  Score=76.27  Aligned_cols=132  Identities=14%  Similarity=0.171  Sum_probs=104.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HH
Q 027608           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIV-YSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (221)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~   88 (221)
                      ..+....+.+.++|+.+.+..|...  ..++..... +.+..+.....+..  ..... .+.+.+++..+...|+++ ..
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~i  227 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTGL  227 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence            4678889999999999999999765  367777776 44442233333322  11111 234577888899999999 78


Q ss_pred             HHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        89 ~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      .+.+++.+++..+++.++.+..+.|++..++++++++|+++.+      +++|..+.+.|+.+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999865      6899999999998875

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.71  E-value=3.7e-07  Score=79.04  Aligned_cols=133  Identities=14%  Similarity=0.103  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHH
Q 027608           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDA---LSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGC   87 (221)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~---~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~   87 (221)
                      .++....+++.+.++.+.+..|..   +.||.+..+....   +++.++.+..  + + .++. ..+.....++.|++-.
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~-~~~~-~~~~~~~~~~~Gi~~~  222 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--I-L-AKPL-KKYAILLNILPGLMWG  222 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--h-c-ccch-HHHHHHHHHHHHHHHH
Confidence            678999999999999999999964   3899988655554   3343333321  1 1 1222 2333444455777667


Q ss_pred             HHHHHHHHHhh-ccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           88 SSQIFSFVGIQ-YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        88 ~~~~~~~~gl~-~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      ..+.+|+.+.+ +.+++.++++.+..|+...+.+++++||+.++++.  +.-.+|.++.+.|+.++.
T Consensus       223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHh
Confidence            78889999999 99999999999999999999999999999988752  122389999999998764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.57  E-value=8.1e-07  Score=66.29  Aligned_cols=68  Identities=16%  Similarity=0.146  Sum_probs=60.9

Q ss_pred             HHHHHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           80 FLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        80 ~~lg~~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      ...++++ ...+.++..++++.+.+.|..+.++.|+++.++++++++||++++      |++|+.+.++|++++.
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3445567 888999999999999999999999999999999999999999875      6999999999998874

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.54  E-value=2.8e-06  Score=71.97  Aligned_cols=129  Identities=14%  Similarity=0.099  Sum_probs=99.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608           72 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (221)
Q Consensus        72 ~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l  151 (221)
                      ++|+..++.+=+++-++.+.+.+.++++.+|+.-.++.++-.++|++++++++|+|++.+      ||.++.+.+.|+.+
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL   86 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence            467777777777777888999999999999999999999999999999999999999865      58999999999988


Q ss_pred             hhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027608          152 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLF  210 (221)
Q Consensus       152 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~  210 (221)
                      +...+....+. ++..   ..+.+....+...|.+++++++++=++-.|+..|++|+.+
T Consensus        87 v~~~~~~~~~~-~~~~---~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~  141 (244)
T PF04142_consen   87 VQLSSSQSSDN-SSSS---SVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN  141 (244)
T ss_pred             eecCCcccccc-cccc---ccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            75332211000 0000   0000112344578999999999999999999999999865

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.48  E-value=6.8e-06  Score=62.95  Aligned_cols=117  Identities=16%  Similarity=0.190  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 027608           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQ   90 (221)
Q Consensus        12 ~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~~   90 (221)
                      .+|+.++.+.++=+...++-|.++++ .++...... . ...+.       ..  ..|       ...+++|+.+ .+.+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~-------~~--~~p-------~~~i~lgl~~~~la~   62 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL-------AF--GLA-------LRAVLLGLAGYALSM   62 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH-------HH--hcc-------HHHHHHHHHHHHHHH
Confidence            36777888888888889999998864 444332221 1 10000       00  011       1257788888 9999


Q ss_pred             HHHHHHhhccchhHHHHhhhhhHHHHHHHHHH--HhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII--FRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        91 ~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l--~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      .++..+++..+++.|.-+.+..|.++.+.++.  +++|++|++      |++|+++.++|++++.
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            99999999999999999999999888888885  799999975      6999999999999986

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.48  E-value=6.3e-05  Score=66.04  Aligned_cols=182  Identities=9%  Similarity=0.062  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhhC---CC-CCC------CHHHHHH
Q 027608           12 LPSVGMVIVLLAQVSNMEVIKAAMSKG---INKYVIIVYSDALSSLFFLFCSFLFHRS---ER-PQL------TFSILCS   78 (221)
Q Consensus        12 ~~~l~l~~~~~~wg~~~v~~K~~~~~~---~~p~~l~~~R~~~a~l~l~~~~~~~~~~---~~-~~~------~~~~~~~   78 (221)
                      ..++.++...+.+++.....|..-..+   +.|.+..+.--.+-.++.....+..+|+   +. +.+      .+++...
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            456778888999999999999987655   6788888877777766665555443222   11 111      2344555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCC
Q 027608           79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP  158 (221)
Q Consensus        79 ~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~  158 (221)
                      +.+=+++-++.+.+++.++.+.+|++-.+..++--+.|+++..+++++|++++      ||..+++.++|+.++......
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~  168 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLS  168 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCC
Confidence            55555555777779999999999999999999999999999999999999876      589999999999988632221


Q ss_pred             CCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 027608          159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFL  209 (221)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~  209 (221)
                      +-+          +.+.....+...|...++.++++=++-.++..|++|+-
T Consensus       169 ~~~----------a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s  209 (345)
T KOG2234|consen  169 PTG----------AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS  209 (345)
T ss_pred             CCC----------ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            100          00122345667999999999999999999999998763

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.41  E-value=8.4e-06  Score=68.52  Aligned_cols=132  Identities=13%  Similarity=0.025  Sum_probs=104.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HH
Q 027608           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (221)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~   88 (221)
                      +..+..+.+.+..+|+.+-+..|.+-+. .+--.=..+-+.+|+++.+|+.......  .-.+.+-...-+..|+++ .+
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~--~l~~p~ll~laLgvavlSSal  222 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGP--ALFSPSLLPLALGVAVLSSAL  222 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcch--hhcChHHHHHHHHHHHHhccc
Confidence            3456777888999999999999987543 4445566788999999999997642221  113445555567789999 99


Q ss_pred             HHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHH
Q 027608           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF  150 (221)
Q Consensus        89 ~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~  150 (221)
                      .+.+...+++..++..-+++.++.|.+..+.++++++|.+|..|      +.|+...+++..
T Consensus       223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAsa  278 (292)
T COG5006         223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAASA  278 (292)
T ss_pred             chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999864      677766666553

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.21  E-value=2.5e-06  Score=69.30  Aligned_cols=100  Identities=20%  Similarity=0.277  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCC
Q 027608           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (221)
Q Consensus        87 ~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~  166 (221)
                      ++.++.|..+++..+|+.++.+....-.|+.+++++.++||+..      .|++..++++.|++.+...++         
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~------~kIlaailAI~GiVmiay~DN---------  128 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMG------FKILAAILAIGGIVMIAYADN---------  128 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhh------hhHHHHHHHhCcEEEEEeccc---------
Confidence            77899999999999999999999999999999999999999975      479999999999988764322         


Q ss_pred             CCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 027608          167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFY  211 (221)
Q Consensus       167 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~  211 (221)
                                ...+.+.|....+++++.-|+|-++.|+...+-+-
T Consensus       129 ----------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~  163 (290)
T KOG4314|consen  129 ----------EHADEIIGIACAVGSAFMAALYKVLFKMFIGNANF  163 (290)
T ss_pred             ----------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence                      33456799999999999999999999988765443

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.18  E-value=5.5e-06  Score=72.45  Aligned_cols=151  Identities=14%  Similarity=0.117  Sum_probs=114.6

Q ss_pred             HHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 027608           30 VIKAAMS--KGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTA  107 (221)
Q Consensus        30 ~~K~~~~--~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~  107 (221)
                      ..|..++  +.--|..++..++..+.+.++.....+..+..+..++..+..++-+|++.++...+-+.++++.+.+..-.
T Consensus        35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~  114 (316)
T KOG1441|consen   35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQT  114 (316)
T ss_pred             eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHH
Confidence            4677776  33358899999888888877665443322222212334567788888888888889999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHH
Q 027608          108 MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFF  187 (221)
Q Consensus       108 i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll  187 (221)
                      +=+++|.++.++++++.+|+.+++.+      ..++....|+.+.+..                    ..+.| +.|...
T Consensus       115 iKa~~P~~tvl~~~~~~~~~~s~~~~------lsL~piv~GV~ias~~--------------------e~~fn-~~G~i~  167 (316)
T KOG1441|consen  115 IKALMPPFTVLLSVLLLGKTYSSMTY------LSLLPIVFGVAIASVT--------------------ELSFN-LFGFIS  167 (316)
T ss_pred             HHhhcchhHHHHHHHHhCCCCcceEE------EEEEEeeeeEEEeeec--------------------ccccc-HHHHHH
Confidence            99999999999999999999987653      4455666777655421                    01223 589999


Q ss_pred             HHHHHHHHHHHHHHHhhhhc
Q 027608          188 LAAEAFMNSAWFILQVWPFN  207 (221)
Q Consensus       188 ~l~aa~~~a~y~i~~k~~~~  207 (221)
                      .+.+.++.+..+|++|++++
T Consensus       168 a~~s~~~~al~~I~~~~ll~  187 (316)
T KOG1441|consen  168 AMISNLAFALRNILSKKLLT  187 (316)
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999995

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.94  E-value=0.0002  Score=63.24  Aligned_cols=141  Identities=12%  Similarity=0.037  Sum_probs=104.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHH
Q 027608            8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL--TFSILCSFFLLSVF   85 (221)
Q Consensus         8 ~~~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~   85 (221)
                      ....++.+.++.+++++|.+.+.-|....+ .|+.++...=-+.+.++..+.....+++...+.  +.+....++.-++.
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~  242 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC  242 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence            445788999999999999999999998764 788887766666777777776666666543333  33333322222222


Q ss_pred             HHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (221)
Q Consensus        86 g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  155 (221)
                      .+..+.+....+++++|+...+=.-+...+..+..+++++|++++.      .++|.++.++|.++....
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~  306 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLA  306 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEcc
Confidence            2566667788899999987766666778899999999999999874      689999999999887543

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.90  E-value=0.00043  Score=59.29  Aligned_cols=169  Identities=14%  Similarity=0.078  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHh---CCCC----hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC--------C--HHHHHH-HHHHHHHH
Q 027608           25 VSNMEVIKAAMS---KGIN----KYVIIVYSDALSSLFFLFCSFLFHRSERPQL--------T--FSILCS-FFLLSVFG   86 (221)
Q Consensus        25 g~~~v~~K~~~~---~~~~----p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~--------~--~~~~~~-~~~lg~~g   86 (221)
                      ..|.+.+|.+-+   +|-|    |+..+..-|+.=++++..+.+++.|...+..        +  ...+.. +++.=.+.
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~   95 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC   95 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence            457778887643   2333    6666666666667888877666544321100        0  001111 22223344


Q ss_pred             -HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCC
Q 027608           87 -CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS  165 (221)
Q Consensus        87 -~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~  165 (221)
                       .....+.|.|+.+|+|+.--.+-...-+|+.+++.-+++.+++.+      ||.|+.....|++.+...+-..     .
T Consensus        96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~~~-----~  164 (372)
T KOG3912|consen   96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDVHL-----V  164 (372)
T ss_pred             HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeeccc-----c
Confidence             666778899999999999988888899999999999999998765      6899999999998764321100     0


Q ss_pred             CCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027608          166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLF  210 (221)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~  210 (221)
                      +      +....-++.+.||++++.+-+--|.-.++-.|.+++++
T Consensus       165 ~------~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~n  203 (372)
T KOG3912|consen  165 T------DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSN  203 (372)
T ss_pred             c------CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            0      00111234578999999999999999999988888764

>TIGR00688 rarD rarD protein

Probab=97.84  E-value=0.00068  Score=57.21  Aligned_cols=101  Identities=8%  Similarity=0.035  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH---hhhCCC-C-CCCHHHHHHHHHHHHHHHHHH
Q 027608           16 GMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFL---FHRSER-P-QLTFSILCSFFLLSVFGCSSQ   90 (221)
Q Consensus        16 ~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~---~~~~~~-~-~~~~~~~~~~~~lg~~g~~~~   90 (221)
                      ..+.++++|+.+.+..|...+  -++......     ...+.|+...   ...... . ....++|..++.+|+++.+.+
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~  222 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKN--TDLAGFCLE-----TLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPL  222 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCC--CCcchHHHH-----HHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHH
Confidence            456789999999999998533  233322221     1222222211   111111 1 122357888888887778899


Q ss_pred             HHHHHHhhccchhHHHHhhhhhHHHHHHHHHHH
Q 027608           91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIF  123 (221)
Q Consensus        91 ~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~  123 (221)
                      .+++.|+++.+|+.++.+.++.|+++.+++.+.
T Consensus       223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.83  E-value=0.00054  Score=58.68  Aligned_cols=133  Identities=14%  Similarity=0.103  Sum_probs=93.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHH
Q 027608           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSS   89 (221)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~   89 (221)
                      ..++...++++.+.+..+.++.|..   ++||.+..+-+ .++.++-..+.....++  +..+++.+ +-.+-|++-...
T Consensus       136 ~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~~~~~--~~~~k~~~-~nil~G~~w~ig  208 (269)
T PF06800_consen  136 MKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNLFSKK--PFFEKKSW-KNILTGLIWGIG  208 (269)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhhcccc--cccccchH-HhhHHHHHHHHH
Confidence            3568889999999999999988863   47888776644 33333222221111111  11222333 335666666778


Q ss_pred             HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608           90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (221)
Q Consensus        90 ~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l  151 (221)
                      +.+++.+.+....+.+=.+..+.+++..+.+.+++||+-++|++  ...++|+++.++|.++
T Consensus       209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhhc
Confidence            88899999999999999999999999999999999999887754  3456688877777653

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=97.82  E-value=5.8e-07  Score=75.55  Aligned_cols=149  Identities=15%  Similarity=0.074  Sum_probs=110.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHH
Q 027608           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVL  119 (221)
Q Consensus        40 ~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~il  119 (221)
                      .|..-.|+-..+=+++--|...++. +   .+ .-.|.+++++|+.-+-.+++...+.|||+-+...++-.-.-..+.++
T Consensus        47 ~Pt~QtFl~Y~LLalVY~~~~~fR~-~---~~-~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~l  121 (336)
T KOG2766|consen   47 APTSQTFLNYVLLALVYGPIMLFRR-K---YI-KAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVL  121 (336)
T ss_pred             CccHHHHHHHHHHHHHHhhHHHhhh-H---HH-HHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHH
Confidence            3566677777777777777765532 1   11 23455688888877667777889999999999998876554567788


Q ss_pred             HHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHH
Q 027608          120 AIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF  199 (221)
Q Consensus       120 a~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~  199 (221)
                      +|+++|.|-.+      .|+.|+++++.|+..+++++-..    +         ..+++.|...||++++.+|.+||+.+
T Consensus       122 sw~fLktrYrl------mki~gV~iCi~GvvmvV~sDV~a----g---------d~aggsnp~~GD~lvi~GATlYaVSN  182 (336)
T KOG2766|consen  122 SWFFLKTRYRL------MKISGVVICIVGVVMVVFSDVHA----G---------DRAGGSNPVKGDFLVIAGATLYAVSN  182 (336)
T ss_pred             HHHHHHHHHhh------heeeeEEeEecceEEEEEeeecc----c---------cccCCCCCccCcEEEEecceeeeecc
Confidence            99999988755      47899999999998887543211    0         12345566789999999999999999


Q ss_pred             HHHhhhhcccccc
Q 027608          200 ILQVWPFNFLFYK  212 (221)
Q Consensus       200 i~~k~~~~~~~~~  212 (221)
                      +....+.||.|..
T Consensus       183 v~EEflvkn~d~~  195 (336)
T KOG2766|consen  183 VSEEFLVKNADRV  195 (336)
T ss_pred             ccHHHHHhcCcHH
Confidence            9988888887643

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.75  E-value=0.0016  Score=56.64  Aligned_cols=136  Identities=20%  Similarity=0.256  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHH--hhh-CCCCC---CCHHHHHHHHHHHHH
Q 027608           13 PSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFL--FHR-SERPQ---LTFSILCSFFLLSVF   85 (221)
Q Consensus        13 ~~l~l~~~~~~wg~~~v~~K~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~~--~~~-~~~~~---~~~~~~~~~~~lg~~   85 (221)
                      ++..++++.++-|...+..+..++ .+.+|.+..++-...+.++.++....  .+. ....+   ..++.+..++...+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            788899999999999999988774 46899999999999998888776655  111 10000   112344556666776


Q ss_pred             HHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhh
Q 027608           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (221)
Q Consensus        86 g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  154 (221)
                      +...+.+.+.-.+..+|...+++.++--+++.+++.++++|++++.      +++|+++.+.|..+=..
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHHH
Confidence            6666777777889999999999999999999999999999999875      68999999999977543

; GO: 0055085 transmembrane transport

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.71  E-value=0.0016  Score=55.83  Aligned_cols=118  Identities=14%  Similarity=0.016  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhh-hhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608           73 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (221)
Q Consensus        73 ~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~-~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l  151 (221)
                      .+.+..-++-|++-.+.|..++.+.++...+.+--+. .++=+.+.+.+.++++|.-+.+++  ..-.+++++.++|+.+
T Consensus        42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~l  119 (269)
T PF06800_consen   42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVIL  119 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHH
Confidence            3667666777777799999999999999999987776 466677889999999998876653  1345577888999988


Q ss_pred             hhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 027608          152 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWP  205 (221)
Q Consensus       152 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~  205 (221)
                      .+..++++.             ..++..+...|...++++.+.|..|.+..|-.
T Consensus       120 ts~~~~~~~-------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~  160 (269)
T PF06800_consen  120 TSYQDKKSD-------------KSSSKSNMKKGILALLISTIGYWIYSVIPKAF  160 (269)
T ss_pred             hcccccccc-------------ccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            765433210             01123455679999999999999999997653

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=97.68  E-value=0.00099  Score=57.64  Aligned_cols=120  Identities=18%  Similarity=0.244  Sum_probs=84.1

Q ss_pred             CCCHHHHHH-HHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHh
Q 027608           70 QLTFSILCS-FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG  148 (221)
Q Consensus        70 ~~~~~~~~~-~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~G  148 (221)
                      ..++++..+ +.-.|+.+.....+-+++++|++-+.=+..=+..|+|+.+++.++.-||.+|.      -..-+.+..+|
T Consensus        77 ~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~G  150 (349)
T KOG1443|consen   77 VLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVG  150 (349)
T ss_pred             CCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhh
Confidence            456776654 44566655888999999999999998888888999999999999999998763      12233444556


Q ss_pred             HHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccc-cccccc
Q 027608          149 AFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLF-YKAQGV  216 (221)
Q Consensus       149 v~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~-~~~~~~  216 (221)
                      +++.+. +...                   .+ ..|.+++++|.++-++==.+.+.+++|-| .+..++
T Consensus       151 lflft~-KsTq-------------------f~-i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~  198 (349)
T KOG1443|consen  151 LFLFTY-KSTQ-------------------FN-IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPI  198 (349)
T ss_pred             eeEEEe-cccc-------------------ee-ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCe
Confidence            666542 2211                   12 46888888877776665556777777776 444443

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.017  Score=50.33  Aligned_cols=155  Identities=15%  Similarity=0.103  Sum_probs=108.5

Q ss_pred             HHHHHHHHHhCCCChHHHH--HHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Q 027608           27 NMEVIKAAMSKGINKYVII--VYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTL  104 (221)
Q Consensus        27 ~~v~~K~~~~~~~~p~~l~--~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~  104 (221)
                      ..+.-|.++...=-|..+.  .++.....+.+...-.. +--+.+++++++.++.+-..++-.+....-..+++|.+...
T Consensus        27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm  105 (314)
T KOG1444|consen   27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPM  105 (314)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchH
Confidence            3455677776422233333  47887777666544221 11122567788888888888877777777778999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHH
Q 027608          105 STAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILG  184 (221)
Q Consensus       105 as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G  184 (221)
                      -.++=+..|+++++....+++.|.++      ..+..+...++|.......+                    ...+ ..|
T Consensus       106 ~tv~kn~tii~~ai~E~lf~~~~~~~------~v~~Sv~~m~~~s~~~~~~d--------------------~sf~-~~g  158 (314)
T KOG1444|consen  106 FTVFKNLTIILTAIGEVLFFGKRPSN------KVWASVFAMIIGSVAAAFTD--------------------LSFN-LRG  158 (314)
T ss_pred             HHHHhhchHHHHHHhHHhhcCcCchh------hHHHHHHHHHHHHHhhcccc--------------------ceec-chh
Confidence            99999999999999999999866654      35667777777775543211                    1111 248


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccc
Q 027608          185 GFFLAAEAFMNSAWFILQVWPFNFL  209 (221)
Q Consensus       185 ~ll~l~aa~~~a~y~i~~k~~~~~~  209 (221)
                      -.+.+.++++-+.|.+..|+..+.-
T Consensus       159 Y~w~~~n~~~~a~~~v~~kk~vd~~  183 (314)
T KOG1444|consen  159 YSWALANCLTTAAFVVYVKKSVDSA  183 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999887643

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.41  E-value=0.01  Score=52.73  Aligned_cols=173  Identities=12%  Similarity=0.070  Sum_probs=110.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHH--HhhhC---CCCCCCHHHHHHHHHH
Q 027608           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGIN--KYVIIVYSDALSSLFFLFCSF--LFHRS---ERPQLTFSILCSFFLL   82 (221)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~--p~~l~~~R~~~a~l~l~~~~~--~~~~~---~~~~~~~~~~~~~~~l   82 (221)
                      ...+++..+++.++||++++-.|.. +. .|  .+..+  -..++ -++.|+..  ...+.   .....+.+.+..-++-
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~wE~~W~v--~gi~~-wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~   79 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKKV-KK-WSWETMWSV--GGIFS-WLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF   79 (345)
T ss_pred             hHHHHHHHHHHHHHhhccccccccc-CC-CchhHHHHH--HHHHH-HHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence            3468889999999999999999983 32 33  22221  01111 12222111  11111   0112345566666666


Q ss_pred             HHHHHHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhhhcc---ccccccchhHHHHHHHHHHhHHHhhhccCC
Q 027608           83 SVFGCSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKL---NWENKSSQAKSLGTFASIGGAFVVTFYKGP  158 (221)
Q Consensus        83 g~~g~~~~~~~~~gl~~t~a~~as~i-~~~~P~~~~ila~l~~~E~~---~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~  158 (221)
                      |.+-...|..++.++++...+.+--+ ..++=++..+...++++|--   +..+  ...-.+|+++.++|+++.......
T Consensus        80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~  157 (345)
T PRK13499         80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQL  157 (345)
T ss_pred             HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhh
Confidence            77668889999999999999988655 46888888889888988754   3332  234678999999999988752111


Q ss_pred             CCcCCCCCCCCCCcccC--CCCchhHHHHHHHHHHHHHHHHHH
Q 027608          159 PLIGELSHSGSPRRLLL--SPQLSWILGGFFLAAEAFMNSAWF  199 (221)
Q Consensus       159 ~~~~~~~~~~~~~~~~~--~~~~~~~~G~ll~l~aa~~~a~y~  199 (221)
                      . +    +     +..+  .+..+...|..+.+.+.+.+++|+
T Consensus       158 k-~----~-----~~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        158 K-E----R-----KMGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             c-c----c-----ccccccccccchHhHHHHHHHHHHHHHHHH
Confidence            0 0    0     0000  123456789999999999999999

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.38  E-value=0.0066  Score=45.11  Aligned_cols=63  Identities=11%  Similarity=0.033  Sum_probs=54.3

Q ss_pred             HHH-HHHHHHHHHHhhccchhHH-HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHh
Q 027608           84 VFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (221)
Q Consensus        84 ~~g-~~~~~~~~~gl~~t~a~~a-s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li  152 (221)
                      +.+ ...+++...++++.|.+.| ++....--+.+.+.++++++|++++.      |++|+.+.+.|++.+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            444 7778889999999999998 66677888889999999999999875      699999999999875

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.27  E-value=0.0019  Score=48.82  Aligned_cols=68  Identities=15%  Similarity=0.149  Sum_probs=57.3

Q ss_pred             HHHHHH-HHHHHHHHHHhhccchhHH-HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhh
Q 027608           81 LLSVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (221)
Q Consensus        81 ~lg~~g-~~~~~~~~~gl~~t~a~~a-s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  154 (221)
                      .+.+.+ ...++++..++++.+.+.| ++...+--+.+.+.+.++++|++++.      |++|+.+.++|++.+-.
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence            345555 8888999999999999988 44457788889999999999999875      69999999999988753

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.27  E-value=0.0024  Score=47.05  Aligned_cols=67  Identities=15%  Similarity=0.130  Sum_probs=57.4

Q ss_pred             HHHHHH-HHHHHHHHHHhhccchhHH-HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           81 LLSVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        81 ~lg~~g-~~~~~~~~~gl~~t~a~~a-s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      ++.+.+ ...+.+.-.++|+.+.+.| ++....--+.+.+.++++++|+++..      |++|+.+.++|++.+-
T Consensus        34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence            344455 7888899999999999998 67778888999999999999999864      7999999999998874

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.26  E-value=0.0011  Score=58.04  Aligned_cols=138  Identities=15%  Similarity=0.154  Sum_probs=107.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHHH-HHHHHhhhCCC---C--CCCHHHHHHH
Q 027608            9 RAALPSVGMVIVLLAQVSNMEVIKAAMS---KGINKYVIIVYSDALSSLFFL-FCSFLFHRSER---P--QLTFSILCSF   79 (221)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~v~~K~~~~---~~~~p~~l~~~R~~~a~l~l~-~~~~~~~~~~~---~--~~~~~~~~~~   79 (221)
                      -++.+......+.+..+.--++.|..+.   ..++++.+..+.--++...++ |+....+....   .  ..+.. ...+
T Consensus       160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~  238 (316)
T KOG1441|consen  160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLIL  238 (316)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHH
Confidence            4677888999999999999999999883   358999999999999999998 98766544322   1  12223 3344


Q ss_pred             HHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           80 FLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        80 ~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      .+.+.+....|...|+-+..|||-+=++...+==.++...++++++|++|+.      +..|..+++.|+.+=.
T Consensus       239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence            4555555888889999999999999888877655566677888999988875      6899999999998754

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.24  E-value=0.016  Score=44.85  Aligned_cols=107  Identities=15%  Similarity=0.136  Sum_probs=73.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhh-hHHHHHH
Q 027608           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNL-IPAFTFV  118 (221)
Q Consensus        40 ~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~-~P~~~~i  118 (221)
                      +|+.-++.-+..+.+++..+.+..+++..+..+.-+ ++...-|++|..+-.+........+++++..+.-+ +=+...+
T Consensus        29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p-~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~  107 (138)
T PF04657_consen   29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVP-WWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL  107 (138)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC-hHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            599999999999999888777665443222222112 24445778888888888999999999988777654 5555566


Q ss_pred             HHHH--HhhhccccccccchhHHHHHHHHHHhHHH
Q 027608          119 LAII--FRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (221)
Q Consensus       119 la~l--~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l  151 (221)
                      +.++  +..||.+    .+..|++|+++.++|+.+
T Consensus       108 iD~fG~fg~~~~~----~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen  108 IDHFGLFGAPKRP----FSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHccccCCCCCC----CCHHHHHHHHHHHHHHhC
Confidence            6663  3333322    235689999999999863

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.17  E-value=0.0035  Score=46.67  Aligned_cols=67  Identities=13%  Similarity=0.194  Sum_probs=56.2

Q ss_pred             HHHHH-HHHHHHHHHHhhccchhHH-HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhh
Q 027608           82 LSVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (221)
Q Consensus        82 lg~~g-~~~~~~~~~gl~~t~a~~a-s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  154 (221)
                      ..+.+ ...+.++..++++.|.+.| ++...+--+.+.+.++++++|++++.      |++|+.+.++|++.+..
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            44556 7788888999999999988 45466777888999999999999975      69999999999998853

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.98  E-value=0.0055  Score=45.22  Aligned_cols=64  Identities=9%  Similarity=-0.029  Sum_probs=55.3

Q ss_pred             HHH-HHHHHHHHHHhhccchhHH-HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           84 VFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        84 ~~g-~~~~~~~~~gl~~t~a~~a-s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      +.+ ...+++...+++..|.+.| ++...+--+.+.+.++++++|++++.      |++|+.+.++|++.+-
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence            455 7888889999999999988 66667888899999999999999875      6999999999998763

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.98  E-value=0.057  Score=46.55  Aligned_cols=127  Identities=10%  Similarity=0.020  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 027608           18 VIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--PQLTFSILCSFFLLSVFGCSSQIFSFV   95 (221)
Q Consensus        18 ~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~--~~~~~~~~~~~~~lg~~g~~~~~~~~~   95 (221)
                      +..++.||.++..=|..   ++|+.+=.+.-...-...-+.+.++.+....  ..-+.+++..+...|....+.-.+|..
T Consensus       154 l~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~  230 (293)
T COG2962         154 LALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAA  230 (293)
T ss_pred             HHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHH
Confidence            34577888888776653   3676655544444433333333333222110  112456777788888888999999999


Q ss_pred             HhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           96 GIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        96 gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      |-++++-+.-+++++..|.+..+++.++++|+++.-      |.+.-+..-.|.++..
T Consensus       231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~  282 (293)
T COG2962         231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS  282 (293)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999864      6777777777877654

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.87  E-value=0.0032  Score=47.02  Aligned_cols=108  Identities=16%  Similarity=0.141  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027608           18 VIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVG   96 (221)
Q Consensus        18 ~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~~~~~~~g   96 (221)
                      +++.++||.+.++.|.+.. +.++..-.. |..-....+                .+.+.+  .+.+.- -.....|+..
T Consensus         2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~L----------------l~n~~y--~ipf~lNq~GSv~f~~~   61 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKFL----------------LLNPKY--IIPFLLNQSGSVLFFLL   61 (113)
T ss_pred             eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHHH----------------HHhHHH--HHHHHHHHHHHHHHHHH
Confidence            4568999999999999875 355443331 322111110                111112  234444 5667788899


Q ss_pred             hhccchhHHHHhh-hhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608           97 IQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (221)
Q Consensus        97 l~~t~a~~as~i~-~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l  151 (221)
                      +..++-|.+.-+. ++.=++|.+.++++++|..+++      .++|+.+.+.|+.+
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVAL  111 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeee
Confidence            9999999998885 6788899999988877776543      58999999999865

Many members are annotated as potential transmembrane proteins.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.85  E-value=0.091  Score=46.73  Aligned_cols=143  Identities=13%  Similarity=0.015  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHHH-HHHHHhh-h-CCC-----CCCC
Q 027608           11 ALPSVGMVIVLLAQVSNM-------EVIKAAMSKGINKYVIIVYSDA---LSSLFFL-FCSFLFH-R-SER-----PQLT   72 (221)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~-------v~~K~~~~~~~~p~~l~~~R~~---~a~l~l~-~~~~~~~-~-~~~-----~~~~   72 (221)
                      .|+...++++.+..+..+       +.-+.+.+.+.+|.....-.+.   ++..+.- .++.+.. | ++.     .+.+
T Consensus       173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~  252 (345)
T PRK13499        173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLA  252 (345)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcccc
Confidence            577888888888888888       6666555557788776666665   4444332 2333221 2 111     1112


Q ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHhhccchhHHHH---hh-hhhHHHHHHHHHHHhhhccccccccchhHHHHHHH
Q 027608           73 FSILCSF----FLLSVFGCSSQIFSFVGIQYSSPTLSTA---ML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFA  144 (221)
Q Consensus        73 ~~~~~~~----~~lg~~g~~~~~~~~~gl~~t~a~~as~---i~-~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l  144 (221)
                      ++.+.+-    .+.|++-...+.+|..|-+..+...+.+   +. .+.-++..+-+. ++||+-+..|+.-+.-++|+++
T Consensus       253 ~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vl  331 (345)
T PRK13499        253 KPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVV  331 (345)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHH
Confidence            2222332    3333333777778888888775555544   55 555566666676 6999987444444567889999


Q ss_pred             HHHhHHHhhh
Q 027608          145 SIGGAFVVTF  154 (221)
Q Consensus       145 ~~~Gv~li~~  154 (221)
                      .++|+.++..
T Consensus       332 iI~g~~lig~  341 (345)
T PRK13499        332 IILAANIVGL  341 (345)
T ss_pred             HHHHHHHHhh
Confidence            9999988753

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.79  E-value=0.00074  Score=57.51  Aligned_cols=134  Identities=16%  Similarity=0.119  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 027608           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQI   91 (221)
Q Consensus        12 ~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~   91 (221)
                      ++..+.+.+++.-+..++..|..-+ ..+.+....+-..++.+.-+..+.....-..| -.+|||..+..+|++|++.|.
T Consensus       191 ~gt~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP-~cgkdr~l~~~lGvfgfigQI  268 (346)
T KOG4510|consen  191 PGTVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASIGAVQLP-HCGKDRWLFVNLGVFGFIGQI  268 (346)
T ss_pred             CchHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhccceecC-ccccceEEEEEehhhhhHHHH
Confidence            3456677777777888888887423 35555444444444444333222222222223 457888888899999999999


Q ss_pred             HHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        92 ~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      +...|+|.-.|+-.+++.++.-++..+.-.++++|.+|+.      .+.|.++.+...+...
T Consensus       269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a  324 (346)
T KOG4510|consen  269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVA  324 (346)
T ss_pred             HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHH
Confidence            9999999999999999999999999999999999988875      5777777666655544

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.56  E-value=0.011  Score=42.53  Aligned_cols=56  Identities=20%  Similarity=0.125  Sum_probs=33.7

Q ss_pred             HHHH-HHHHHHHHHHhhccchhHH-HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHH
Q 027608           83 SVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFA  144 (221)
Q Consensus        83 g~~g-~~~~~~~~~gl~~t~a~~a-s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l  144 (221)
                      .+.+ ...+.++..++++.+.+.+ ++...+..+.+.+.+.++++|++|++      |++|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            3445 7888899999999999999 66677899999999999999999986      5777765

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.40  E-value=0.047  Score=47.66  Aligned_cols=69  Identities=23%  Similarity=0.367  Sum_probs=58.8

Q ss_pred             HHHHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (221)
Q Consensus        81 ~lg~~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  155 (221)
                      +.|+.. .+.+.+.+.++.+.+++.-+-+..+.-++..+++..+++||++++      .+.|+.+++.|..+++..
T Consensus        54 ~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   54 WIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF  123 (300)
T ss_pred             HHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe
Confidence            455555 667778889999999999999999999999999999999999865      689999999999877644

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.38  E-value=0.043  Score=48.95  Aligned_cols=141  Identities=11%  Similarity=0.164  Sum_probs=100.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCC---CCHHHHHHHHH
Q 027608            8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSK---GINKYVIIVYSDALSSLFFLFCSFLFHRSERPQ---LTFSILCSFFL   81 (221)
Q Consensus         8 ~~~~~~~l~l~~~~~~wg~~~v~~K~~~~~---~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~---~~~~~~~~~~~   81 (221)
                      .+...+.++.+++++.+|.+.++.|.-.++   .+|--.+..+=-++..++++|..+...+-..++   ++..+..-+++
T Consensus       243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~  322 (416)
T KOG2765|consen  243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVF  322 (416)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeH
Confidence            344568889999999999999999985543   245444555555667778887665543322222   22334445678


Q ss_pred             HHHHH-HHHHHHHHHHhhccchhHHHHhhhh-hHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608           82 LSVFG-CSSQIFSFVGIQYSSPTLSTAMLNL-IPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (221)
Q Consensus        82 lg~~g-~~~~~~~~~gl~~t~a~~as~i~~~-~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  155 (221)
                      .++++ ++.-+++.+|.-.|++-.+++=.++ +| ..++.-.++.+.+++      ...++|.+..++|-+.+...
T Consensus       323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIP-LA~~aD~l~k~~~~S------~~~iiGsi~Ifv~Fv~vn~~  391 (416)
T KOG2765|consen  323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIP-LAMFADVLIKGKHPS------ALYIIGSIPIFVGFVIVNIS  391 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHhccchhheeeeeEeee-HHHHHHHHHcCCCCC------HHHHHHHHHHHHHHhheecc
Confidence            89999 9999999999999999999887765 55 455556666555555      46799999999998887643

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.14  E-value=0.02  Score=48.12  Aligned_cols=109  Identities=12%  Similarity=0.077  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCC
Q 027608           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (221)
Q Consensus        87 ~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~  166 (221)
                      .+.+...+.+++|.+=-+..+=-+.-|+=+++++.++.+++-+|+      |...++...+|+++.....+...      
T Consensus        96 LlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFmYK~~Kv~------  163 (337)
T KOG1580|consen   96 LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFMYKENKVG------  163 (337)
T ss_pred             HHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhhccccccC------
Confidence            777888899999998777777778889999999999999988875      68999999999988754323221      


Q ss_pred             CCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 027608          167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKAQG  215 (221)
Q Consensus       167 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~~~~  215 (221)
                              ..+.++...|.++++++--.=+.-...|+++.+.|.+....
T Consensus       164 --------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~  204 (337)
T KOG1580|consen  164 --------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTS  204 (337)
T ss_pred             --------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchh
Confidence                    12334556899999998888888888999998888765443

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.85  E-value=0.33  Score=42.29  Aligned_cols=148  Identities=14%  Similarity=0.096  Sum_probs=96.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhh--hhHHHHH
Q 027608           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN--LIPAFTF  117 (221)
Q Consensus        40 ~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~--~~P~~~~  117 (221)
                      +|..+.+.+-+.+.++=.  +....++.. ....+.|.++..+++.......|.+.+++|.|=-.-.+-=.  +.|++  
T Consensus        50 ~~~fL~~~q~l~~~~~s~--~~l~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm--  124 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSY--AMLKWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM--  124 (327)
T ss_pred             ccHHHHHHHHHHHHHHHH--HHHhccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH--
Confidence            455666666666655442  223333332 23345677888888877888899999999987443333322  56654  


Q ss_pred             HHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHH
Q 027608          118 VLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSA  197 (221)
Q Consensus       118 ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~  197 (221)
                      +.+.++.+.|.+.+      +.....+.-.|+.+..+.+..+  .          ......++...|..++...-+.=++
T Consensus       125 lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~--s----------~~~~g~~ns~~G~~Ll~~~L~fDgf  186 (327)
T KOG1581|consen  125 LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD--S----------SSKSGRENSPIGILLLFGYLLFDGF  186 (327)
T ss_pred             HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC--C----------ccccCCCCchHhHHHHHHHHHHHhh
Confidence            56778888787764      5666777778887655443221  0          0112334567899999999998889


Q ss_pred             HHHHHhhhhcccc
Q 027608          198 WFILQVWPFNFLF  210 (221)
Q Consensus       198 y~i~~k~~~~~~~  210 (221)
                      -+..|+++.++|.
T Consensus       187 Tn~tQd~lf~~~k  199 (327)
T KOG1581|consen  187 TNATQDSLFKKYK  199 (327)
T ss_pred             HHhHHHHHhccCC
Confidence            9999999988653

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=95.80  E-value=0.00054  Score=57.61  Aligned_cols=171  Identities=16%  Similarity=0.081  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 027608           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (221)
Q Consensus        13 ~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~   92 (221)
                      .++..++-++.||+...+.-.-   |=+|.+-..-- .++++++....++. .  +|..+.+.+.--++-|.+-.+.|..
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGt-T~GALifaiiv~~~-~--~p~~T~~~~iv~~isG~~Ws~GQ~~   75 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGT-TLGALIFAIIVFLF-V--SPELTLTIFIVGFISGAFWSFGQAN   75 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec---CCChhHhhhhc-cHHHHHHHHHHhee-e--cCccchhhHHHHHHhhhHhhhhhhh
Confidence            4566777899999988775431   33565544332 23344333333332 2  3455666665555556655888999


Q ss_pred             HHHHhhccchhHHHHhhh-hhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCC
Q 027608           93 SFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (221)
Q Consensus        93 ~~~gl~~t~a~~as~i~~-~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~  171 (221)
                      ++.++++.+.++|.-+.+ ++=+-+.+.+.+.++|.-+..+.  ....+.+++.+.|+.+-+..+..+-           
T Consensus        76 Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs~~~~~nk-----------  142 (288)
T COG4975          76 QFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTSKQDRNNK-----------  142 (288)
T ss_pred             hhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEeeeeccccc-----------
Confidence            999999999999987764 67777888899999998765442  1223345566677766543221110           


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 027608          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWP  205 (221)
Q Consensus       172 ~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~  205 (221)
                        ..++.++.-.|...++.+.+.|-.|.++.+-.
T Consensus       143 --~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f  174 (288)
T COG4975         143 --EEENPSNLKKGIVILLISTLGYVGYVVLFQLF  174 (288)
T ss_pred             --cccChHhhhhheeeeeeeccceeeeEeeeccc
Confidence              01123345578888888888888887775443

>TIGR00803 nst UDP-galactose transporter

Probab=95.19  E-value=0.18  Score=41.53  Aligned_cols=61  Identities=11%  Similarity=0.091  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHH
Q 027608           84 VFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF  150 (221)
Q Consensus        84 ~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~  150 (221)
                      +.....+.+..+-++|.++..-+....+.++++.+++.++++|+++..      ++.|+.+.+.|+.
T Consensus       160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            333666677889999999999999999999999999999999999875      6889999988864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.18  E-value=0.11  Score=43.89  Aligned_cols=73  Identities=18%  Similarity=0.262  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHh
Q 027608           74 SILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (221)
Q Consensus        74 ~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li  152 (221)
                      ..|..+.++++.+++.|.+.|.-+.+-+|-.-|+++.+--.||.+.+.+++..+++.|      ||+|.++.+.+..+=
T Consensus       239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTAD  311 (337)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhH
Confidence            3466778888888999999999999999999999999999999999999999999876      589999999998653

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.11  E-value=2.2  Score=33.40  Aligned_cols=110  Identities=8%  Similarity=0.016  Sum_probs=64.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhh-hhhHHHHHH
Q 027608           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFV  118 (221)
Q Consensus        40 ~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~-~~~P~~~~i  118 (221)
                      +|+.-.+..+..+.+++..+.+..+++......++.-++...-|.+|..+-..-........+++...+. .-+-+...+
T Consensus        33 spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~gll  112 (150)
T COG3238          33 SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLL  112 (150)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHH
Confidence            6999999999999998888877633322111112223344555666655555555566666666554333 334444444


Q ss_pred             HHHHH-hhhccccccccchhHHHHHHHHHHhHHHh
Q 027608          119 LAIIF-RLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (221)
Q Consensus       119 la~l~-~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li  152 (221)
                      +.++= ++++   +|.++..|++|+++.++|++++
T Consensus       113 iD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238         113 IDHFGWFGVP---KRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             HHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence            44321 2222   2335667899999999996554

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.28  E-value=1.2  Score=39.03  Aligned_cols=137  Identities=18%  Similarity=0.216  Sum_probs=96.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhh-C----CCC-CCCHHHHHHHHHHH
Q 027608           11 ALPSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHR-S----ERP-QLTFSILCSFFLLS   83 (221)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~v~~K~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~~~~~-~----~~~-~~~~~~~~~~~~lg   83 (221)
                      ..+|..+....+.=....+..|...+ .+.+-+.+.++.-+++.+.+..+.+..+. +    ..+ ..+...+..+.+-+
T Consensus       156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            34677788777777888888888765 35778889999999988877766544321 1    001 11223345555666


Q ss_pred             HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           84 VFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        84 ~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      ++|++-.++-++-.+.+||..-++.-...-..+.+...++++++.++      ..++|+.+++.|-++=.
T Consensus       236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~------~n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTF------LNVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceech------hhhHHHHHHhhhhhHHh
Confidence            66677777888999999999888888555555666666777788775      46899999998876643

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.43  E-value=0.071  Score=46.62  Aligned_cols=118  Identities=18%  Similarity=0.169  Sum_probs=82.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HH
Q 027608           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (221)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~   88 (221)
                      +..+....+.+.++-|+++++-|.+...           .....        .+ .+.-+..-.++  +....|.+- .+
T Consensus        19 ~~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~~~--------~r-a~~gg~~yl~~--~~Ww~G~ltm~v   76 (335)
T KOG2922|consen   19 NIIGLVLAISSSIFIGSSFILKKKGLKR-----------AGASG--------LR-AGEGGYGYLKE--PLWWAGMLTMIV   76 (335)
T ss_pred             ceeeeeehhhccEEEeeehhhhHHHHHH-----------Hhhhc--------cc-ccCCCcchhhh--HHHHHHHHHHHH
Confidence            3455666777788889999988887643           11110        01 01111111233  233456665 66


Q ss_pred             HHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (221)
Q Consensus        89 ~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  155 (221)
                      ....-|.+..+.+++.-+-+-++.-++..+++..+++||++++      ..+|..++++|-.+++..
T Consensus        77 Gei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   77 GEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEEe
Confidence            6666777888999999999999999999999999999999875      578999999998887643

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=91.23  E-value=0.2  Score=42.53  Aligned_cols=132  Identities=14%  Similarity=0.100  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 027608           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (221)
Q Consensus        13 ~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~   92 (221)
                      +...++.+.+.+-.+.+..+.-.-++++.+.--+.-+.++++++--      ++..++.++..| .-.+-|++-...+.+
T Consensus       153 gi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~------~~~~~~~~K~t~-~nii~G~~Wa~GNl~  225 (288)
T COG4975         153 GIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF------FKMEKRFNKYTW-LNIIPGLIWAIGNLF  225 (288)
T ss_pred             heeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhh------cccccchHHHHH-HHHhhHHHHHhhHHH
Confidence            4444445555555555544432223455544444455555544321      121122333333 335567666777888


Q ss_pred             HHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608           93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (221)
Q Consensus        93 ~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~  153 (221)
                      ++.+-+....+++=.+..+.-+...+-+.++++||-|.|++  ...++|+++.++|+.++.
T Consensus       226 ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~lg  284 (288)
T COG4975         226 MLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILLG  284 (288)
T ss_pred             HHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhhh
Confidence            88888877666665666677777788899999999998875  356789999999988764

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=90.98  E-value=7.2  Score=34.00  Aligned_cols=136  Identities=15%  Similarity=0.177  Sum_probs=90.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHHHHHH----HHHHhhh-C--CCCCCCHHHHHHHH--
Q 027608           11 ALPSVGMVIVLLAQVSNMEVIKA-AMSKGINKYVIIVYSDALSSLFFLF----CSFLFHR-S--ERPQLTFSILCSFF--   80 (221)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~v~~K~-~~~~~~~p~~l~~~R~~~a~l~l~~----~~~~~~~-~--~~~~~~~~~~~~~~--   80 (221)
                      ..+.++.++++++-+.-++.-.+ .....++|...+.+.-..+.+++..    +.++... .  ..++-.+.||...+  
T Consensus       175 itGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~  254 (372)
T KOG3912|consen  175 ITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAA  254 (372)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHH
Confidence            46788999999999999988554 4445699999999998887554433    3222111 1  12333355554322  


Q ss_pred             -------HHHHHH-HHHHHHH-HHHh---hccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHh
Q 027608           81 -------LLSVFG-CSSQIFS-FVGI---QYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG  148 (221)
Q Consensus        81 -------~lg~~g-~~~~~~~-~~gl---~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~G  148 (221)
                             .+...+ .....+| +.|+   |+.||++=.++-.+=-.++.+++..+..|+++.      .|+.|.++-+.|
T Consensus       255 ~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~l------lqilGFliLi~G  328 (372)
T KOG3912|consen  255 LQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHL------LQILGFLILIMG  328 (372)
T ss_pred             hcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHH------HHHHHHHHHHHH
Confidence                   333333 3332222 2333   556788878888887888888899999999986      469999999999


Q ss_pred             HHHh
Q 027608          149 AFVV  152 (221)
Q Consensus       149 v~li  152 (221)
                      .++-
T Consensus       329 i~lY  332 (372)
T KOG3912|consen  329 IILY  332 (372)
T ss_pred             HHHH
Confidence            8763

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=90.85  E-value=2.5  Score=36.58  Aligned_cols=191  Identities=12%  Similarity=0.123  Sum_probs=111.2

Q ss_pred             CccccchhhhHHHHHHHHHH-HHHHHHHHHHHHHHh-CCCChH--HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHH
Q 027608            2 GVDMGSMRAALPSVGMVIVL-LAQVSNMEVIKAAMS-KGINKY--VIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILC   77 (221)
Q Consensus         2 ~~~~~~~~~~~~~l~l~~~~-~~wg~~~v~~K~~~~-~~~~p~--~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~   77 (221)
                      |.|.....+|..++..-.+. +.+=.+...-....+ .++.|+  .+++.++++=..+-+.-.... +.+++..+   |+
T Consensus        32 g~~ls~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP---~r  107 (367)
T KOG1582|consen   32 GFNLSDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIP---WR  107 (367)
T ss_pred             eeccccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee-cccceecc---hh
Confidence            34445555665544332221 222233333333332 357765  566777766433322211111 11112233   44


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhHHHHhhh--hhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608           78 SFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN--LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (221)
Q Consensus        78 ~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~--~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  155 (221)
                      .+..++++-.+.+.+-+-++.|.+=-.--++-.  +.|++  +.+.++-+.|-.+      ...+...+-..|.++.++.
T Consensus       108 tY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVm--iggifIqGkRY~v------~d~~aA~lm~lGli~FTLA  179 (367)
T KOG1582|consen  108 TYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVM--IGGIFIQGKRYGV------HDYIAAMLMSLGLIWFTLA  179 (367)
T ss_pred             HhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhh--heeeeeccccccH------HHHHHHHHHHHHHHhhhhc
Confidence            566677766666767677777765444444433  46655  4567776666544      4678888888999887765


Q ss_pred             cCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccC
Q 027608          156 KGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKAQGVVKSAY  221 (221)
Q Consensus       156 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~~~~~~~~~~  221 (221)
                      +.+.                +++.+ ..|..++-+|-++=|+---+|.+..+.++....-++.+.|
T Consensus       180 Ds~~----------------sPNF~-~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy  228 (367)
T KOG1582|consen  180 DSQT----------------SPNFN-LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSY  228 (367)
T ss_pred             cccc----------------CCCcc-eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeee
Confidence            4321                11222 5799999999999999999999999999887776666544

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=89.66  E-value=3.1  Score=35.01  Aligned_cols=132  Identities=14%  Similarity=0.171  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCC----CCCHHHHHHHHHHHHHHHH
Q 027608           14 SVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHRSERP----QLTFSILCSFFLLSVFGCS   88 (221)
Q Consensus        14 ~l~l~~~~~~wg~~~v~~K~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~----~~~~~~~~~~~~lg~~g~~   88 (221)
                      |+.+..-.+.=+......|...+ ....-++-.++.-.++..+++.+.+..+.+...    .++...+.++++-|+..++
T Consensus       157 Y~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svg  236 (309)
T COG5070         157 YLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVG  236 (309)
T ss_pred             eEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhh
Confidence            44444433333444444555443 236678899999999999998887765543211    1233334456666666677


Q ss_pred             HHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (221)
Q Consensus        89 ~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l  151 (221)
                      -.++--|-++-|+.+.-+.+-++.-.-..+.+.++++|+.+..      ++..+.+++...++
T Consensus       237 iSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~i  293 (309)
T COG5070         237 ISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAI  293 (309)
T ss_pred             hhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHH
Confidence            7778888899999999999999988888889999999998864      57888888654433

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.15  E-value=0.74  Score=39.76  Aligned_cols=143  Identities=17%  Similarity=0.073  Sum_probs=75.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhC----CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhH
Q 027608           40 NKYVIIVYSDALSSLFFLFCSFLFHRS----ERPQ--LTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIP  113 (221)
Q Consensus        40 ~p~~l~~~R~~~a~l~l~~~~~~~~~~----~~~~--~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P  113 (221)
                      .|.....++.++...+-+.+.....+-    ..++  ++.+....+.-+.+.-.+...+-+.-++|.+.+.=-+=-.+.-
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt  139 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT  139 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence            477788888888766555554332211    1122  3333333332222221111222234455554432222234666


Q ss_pred             HHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHH
Q 027608          114 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAF  193 (221)
Q Consensus       114 ~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~  193 (221)
                      +|+.++++.++|+|-+...      ..+..+.+.|- .+    |.  ++++           ..+.-...|.++.+.|.+
T Consensus       140 vFtVlLtyvllkqkTs~~~------~~~C~lIi~GF-~l----Gv--dqE~-----------~~~~ls~~GvifGVlaSl  195 (347)
T KOG1442|consen  140 VFTVLLTYVLLKQKTSFFA------LGCCLLIILGF-GL----GV--DQEG-----------STGTLSWIGVIFGVLASL  195 (347)
T ss_pred             hHHHHhHHhhccccccccc------ceeehhheehh-ee----cc--cccc-----------ccCccchhhhHHHHHHHH
Confidence            8999999999999876531      22333333332 11    21  1110           112223589999999999


Q ss_pred             HHHHHHHHHhhhh
Q 027608          194 MNSAWFILQVWPF  206 (221)
Q Consensus       194 ~~a~y~i~~k~~~  206 (221)
                      +-|...|..||.+
T Consensus       196 ~vAlnaiytkk~l  208 (347)
T KOG1442|consen  196 AVALNAIYTKKVL  208 (347)
T ss_pred             HHHHHHHhhheec
Confidence            9999999988554

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=88.74  E-value=7.8  Score=33.96  Aligned_cols=134  Identities=16%  Similarity=0.167  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-----CCHHHHHHHHHHHHH
Q 027608           12 LPSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQ-----LTFSILCSFFLLSVF   85 (221)
Q Consensus        12 ~~~l~l~~~~~~wg~~~v~~K~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~-----~~~~~~~~~~~lg~~   85 (221)
                      .++.++..-.++=|.....-+.... .+++++.+.+.-.+..++.-... +......++.     ..++-++-+++.+.+
T Consensus       172 ~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~-li~qg~~~~av~F~~~hp~~~~Di~l~s~~  250 (327)
T KOG1581|consen  172 IGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY-LILQGHLLPAVSFIKEHPDVAFDILLYSTC  250 (327)
T ss_pred             HhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh-hhcCCCCchHHHHHHcChhHHHHHHHHHHh
Confidence            4555555444444444444333333 35788888877777666544333 2222221121     234556678889999


Q ss_pred             HHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHh
Q 027608           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (221)
Q Consensus        86 g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li  152 (221)
                      |+..|.+-+.-++.-.+-.-+.|+.+==++..+++.+.++.++++.|      +.|+.+.|.|..+=
T Consensus       251 gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~  311 (327)
T KOG1581|consen  251 GAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLE  311 (327)
T ss_pred             hhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHH
Confidence            98888888888888888777788888888999999999999998764      68888988888663

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=85.74  E-value=3.1  Score=36.03  Aligned_cols=131  Identities=11%  Similarity=0.095  Sum_probs=83.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHH
Q 027608           69 PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPT-LSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG  147 (221)
Q Consensus        69 ~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~-~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~  147 (221)
                      ++.+.|++...+.+=   +..+.+-+.++++-=+- .=-++-.-.++.++++++++.+.|-+.+      |+..+++.-+
T Consensus        60 ~kiplk~Y~i~V~mF---F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTi  130 (330)
T KOG1583|consen   60 PKIPLKDYAITVAMF---FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITI  130 (330)
T ss_pred             CCCchhhhheehhee---eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhh
Confidence            566777654333222   44455566777773222 2223335678889999999998887765      6889999999


Q ss_pred             hHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027608          148 GAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLF  210 (221)
Q Consensus       148 Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~  210 (221)
                      |+++-++.+.++.+. . +.....++.......|..|..++..|-+.=|.-.++|.++=|||.
T Consensus       131 GiiIcTl~s~~d~~~-~-~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG  191 (330)
T KOG1583|consen  131 GIIICTLFSSKDGRS-K-LSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG  191 (330)
T ss_pred             hheeEEeecCcchhh-h-hcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            998876654443321 0 000000001112234678999999999999999999999888874

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=81.27  E-value=32  Score=29.00  Aligned_cols=120  Identities=10%  Similarity=0.030  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH-HhhhCC-CCCCCHHHHHHHHHHHHHH-H
Q 027608           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSF-LFHRSE-RPQLTFSILCSFFLLSVFG-C   87 (221)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~-~~~~~~-~~~~~~~~~~~~~~lg~~g-~   87 (221)
                      ..+.++.++++++=|...+.....++++-.|+..--.+..+-++++..+.. ..++.. ..+--.+.+-...+.-++. .
T Consensus       113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a  192 (244)
T PF04142_consen  113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQA  192 (244)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHH
Confidence            456778888889999999999888876445555554554444443333322 222211 1111112222222223333 4


Q ss_pred             HHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhcccc
Q 027608           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNW  130 (221)
Q Consensus        88 ~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~  130 (221)
                      ......-.-+||.+...=..-.+..-+++.+++.++++++++.
T Consensus       193 ~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~  235 (244)
T PF04142_consen  193 IGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL  235 (244)
T ss_pred             HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            4555556688999988888888888899999999999999875

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.53
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.52

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.53  E-value=2.1e-07  Score=70.89  Aligned_cols=69  Identities=13%  Similarity=0.216  Sum_probs=52.8

Q ss_pred             HHHHHH-HHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (221)
Q Consensus        81 ~lg~~g-~~~~~~~~~gl~~t~a~~as~i-~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~  155 (221)
                      ++++++ .+++++++.++++.+++.+..+ .++.|++++++++++++|+++++      +++|+++.++|++++...
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence            577777 9999999999999999999888 89999999999999999999986      589999999999998754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.52  E-value=5.7e-07  Score=65.89  Aligned_cols=68  Identities=13%  Similarity=0.219  Sum_probs=61.6

Q ss_pred             HHHHHH-HHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhh
Q 027608           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (221)
Q Consensus        81 ~lg~~g-~~~~~~~~~gl~~t~a~~as~i-~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~  154 (221)
                      +.+.++ ..++.++..++++.+.+.+..+ ..+.|+++.++++++++|+++++      |++|+.+.++|++++..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            567777 8899999999999999999877 79999999999999999999875      69999999999998864

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00