Citrus Sinensis ID: 027609
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 221 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L7V3 | 829 | Probable methyltransferas | yes | no | 0.995 | 0.265 | 0.713 | 2e-96 | |
| Q6NPR7 | 770 | Probable methyltransferas | no | no | 0.995 | 0.285 | 0.711 | 5e-94 | |
| Q0WT31 | 770 | Probable methyltransferas | no | no | 0.995 | 0.285 | 0.702 | 1e-93 | |
| Q9SD39 | 895 | Probable methyltransferas | no | no | 0.968 | 0.239 | 0.663 | 2e-87 | |
| Q9LN50 | 724 | Probable methyltransferas | no | no | 0.909 | 0.277 | 0.525 | 3e-65 | |
| Q9SIZ3 | 589 | Probable methyltransferas | no | no | 0.850 | 0.319 | 0.482 | 3e-47 | |
| Q9LYN3 | 610 | Probable methyltransferas | no | no | 0.850 | 0.308 | 0.467 | 2e-44 | |
| B9DFI7 | 616 | Probable methyltransferas | no | no | 0.873 | 0.313 | 0.427 | 2e-39 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.778 | 0.252 | 0.457 | 3e-39 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.832 | 0.265 | 0.426 | 3e-38 |
| >sp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 351 bits (901), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 159/223 (71%), Positives = 194/223 (86%), Gaps = 3/223 (1%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNS-EAGVYGKAAPEDFTADYQHWKNVVSKS 59
MH P DK++RGS+WP QWP RLEK P+WL+S + GVYGKAAPEDF+ADY+HWK VV+KS
Sbjct: 606 MHTAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTKS 665
Query: 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
YLNG+GINW+ VRNVMDMRAVYGGFAAAL+DLKVWVMNVVPI+SPDTL IIYERGLFG+Y
Sbjct: 666 YLNGLGINWASVRNVMDMRAVYGGFAAALRDLKVWVMNVVPIDSPDTLAIIYERGLFGIY 725
Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVE 177
HDWCESF+TYPR+YDLLHADHLFS +K+ +L AV+AEVDR+LRP+G LI+RDDAETI +
Sbjct: 726 HDWCESFSTYPRSYDLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAETIQQ 785
Query: 178 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 220
VE +VK++ W+VRM Y+ + +G+L V K+ WRP E ET+ A+
Sbjct: 786 VEGMVKAMKWEVRMTYSKEKEGLLSVQKSIWRPSEVETLTYAI 828
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q6NPR7|PMTO_ARATH Probable methyltransferase PMT24 OS=Arabidopsis thaliana GN=At1g29470 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (880), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 158/222 (71%), Positives = 188/222 (84%), Gaps = 2/222 (0%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
+HKV D SKRG+ WP WP R+E P WL+S+ GVYGK A EDFTAD++ WK +VSKSY
Sbjct: 548 IHKVTEDSSKRGAVWPESWPERVETVPQWLDSQEGVYGKPAQEDFTADHERWKTIVSKSY 607
Query: 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
LNGMGI+WS+VRNVMDMRAVYGGFAAALKDLK+WVMNVVPI+SPDTLPIIYERGLFG+YH
Sbjct: 608 LNGMGIDWSYVRNVMDMRAVYGGFAAALKDLKLWVMNVVPIDSPDTLPIIYERGLFGIYH 667
Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEV 178
DWCESF+TYPRTYDLLHADHLFS++KK +L V+AEVDRILRP G I+RDD ETI E+
Sbjct: 668 DWCESFSTYPRTYDLLHADHLFSSLKKRCNLVGVMAEVDRILRPQGTFIVRDDMETIGEI 727
Query: 179 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 220
E +VKS+ W+VRM ++ D +G+L V K++WRP E ETI SA+
Sbjct: 728 EKMVKSMKWNVRMTHSKDGEGLLSVQKSWWRPTEAETIQSAI 769
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana GN=At2g34300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 342 bits (877), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 156/222 (70%), Positives = 188/222 (84%), Gaps = 2/222 (0%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
MHKV D SKRG+ WP WP R+E P WL+S+ GVYGK APEDFTAD + WK +VSK+Y
Sbjct: 548 MHKVTEDSSKRGAVWPNMWPERVETAPEWLDSQEGVYGKPAPEDFTADQEKWKTIVSKAY 607
Query: 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
LN MGI+WS VRNVMDMRAVYGGFAAALKDLK+WVMNVVP+++PDTLPIIYERGLFG+YH
Sbjct: 608 LNDMGIDWSNVRNVMDMRAVYGGFAAALKDLKLWVMNVVPVDAPDTLPIIYERGLFGIYH 667
Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEV 178
DWCESFNTYPRTYDLLHADHLFST++K +L +V+AE+DRILRP G I+RDD ET+ EV
Sbjct: 668 DWCESFNTYPRTYDLLHADHLFSTLRKRCNLVSVMAEIDRILRPQGTFIIRDDMETLGEV 727
Query: 179 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 220
E +VKS+ W V+M + DN+G+L + K++WRP+ETETI SA+
Sbjct: 728 EKMVKSMKWKVKMTQSKDNEGLLSIEKSWWRPEETETIKSAI 769
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (823), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 144/217 (66%), Positives = 180/217 (82%), Gaps = 3/217 (1%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNS-EAGVYGKAAPEDFTADYQHWKNVVSKS 59
MHKVP + +RGS+WP+ WP RL+ PPYWLNS + G+YGK AP DFT DY+HWK+VVSK
Sbjct: 679 MHKVPTNVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRDFTTDYEHWKHVVSKV 738
Query: 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
Y+N +GI+WS VRNVMDMRAVYGGFAAALKDL+VWVMNVV I SPDTLPIIYERGLFG+Y
Sbjct: 739 YMNEIGISWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNINSPDTLPIIYERGLFGIY 798
Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVE 177
HDWCESF+TYPR+YDLLHADHLFS ++ +L V+AEVDRI+RP G LI+RD++ I E
Sbjct: 799 HDWCESFSTYPRSYDLLHADHLFSKLRTRCNLVPVMAEVDRIVRPGGKLIVRDESNVIRE 858
Query: 178 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETE 214
VE+++KSLHWDV + ++ +G+L K +WRP+ ++
Sbjct: 859 VENMLKSLHWDVHLTFSKHQEGILSAQKGFWRPETSQ 895
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LN50|PMTS_ARATH Probable methyltransferase PMT28 OS=Arabidopsis thaliana GN=At1g19430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 147/213 (69%), Gaps = 12/213 (5%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
++++P + G+ WP +WP RLE P WL S+ E D HW +V+KSY
Sbjct: 521 IYEIPSAIEQHGAEWPEEWPKRLETYPEWLTSK---------EKAMEDTNHWNAMVNKSY 571
Query: 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
L G+GI+W +RNVMDM A+YGGF A+L VWVMNVVP+ SPDTLP IYERGL G+YH
Sbjct: 572 LTGLGIDWLHIRNVMDMTAIYGGFGASLVKQNVWVMNVVPVHSPDTLPFIYERGLLGIYH 631
Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKKSLK---AVVAEVDRILRPDGNLILRDDAETIVE 177
DWCE F TYPR+YDLLHADHLFS +K K ++V E+DR+ RP G +++RD E +
Sbjct: 632 DWCEPFGTYPRSYDLLHADHLFSRLKNRCKQPASIVVEMDRLTRPGGWVVVRDKVEILEP 691
Query: 178 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRP 210
+E++++SLHW++RM Y D +GMLC KT WRP
Sbjct: 692 LEEILRSLHWEIRMTYAQDKEGMLCAQKTLWRP 724
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SIZ3|PMTN_ARATH Probable methyltransferase PMT23 OS=Arabidopsis thaliana GN=At2g40280 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 188 bits (477), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 131/203 (64%), Gaps = 15/203 (7%)
Query: 15 WPLQWPLRL-EKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRN 73
WP WP RL P ++ +A E D + W VS YL + +NWS VRN
Sbjct: 397 WPELWPKRLVSVKPQSISVKA--------ETLKKDTEKWSASVSDVYLKHLAVNWSTVRN 448
Query: 74 VMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTY 133
VMDM A +GGFAAAL +L +WVMNVVP++ PDTL ++Y+RGL G+YHDWCES NTYPRTY
Sbjct: 449 VMDMNAGFGGFAAALINLPLWVMNVVPVDKPDTLSVVYDRGLIGVYHDWCESVNTYPRTY 508
Query: 134 DLLHADHLFS--TIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM 191
DLLH+ L T + + VVAE+DRI+RP G L+++D+ ETI+++E ++ SLHW +
Sbjct: 509 DLLHSSFLLGDLTQRCEIVQVVAEIDRIVRPGGYLVVQDNMETIMKLESILGSLHWSTK- 567
Query: 192 IYTNDNQGMLCVHKTYWRPKETE 214
IY + L K +WRP + E
Sbjct: 568 IYEDR---FLVGRKGFWRPAKPE 587
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LYN3|PMTM_ARATH Probable methyltransferase PMT22 OS=Arabidopsis thaliana GN=At3g56080 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/201 (46%), Positives = 125/201 (62%), Gaps = 13/201 (6%)
Query: 13 SRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVR 72
+WP WP RL + P L E + + E F D + W V+S YL + INW+ +
Sbjct: 420 GKWPSGWPERLTETPVSLFRE-----QRSEESFREDSKLWSGVMSNIYLYSLAINWTRIH 474
Query: 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRT 132
NVMDM A YGGFAAAL + +WVMNV+P+E DTL I++RGL G+YHDWCESFNTYPR+
Sbjct: 475 NVMDMNAGYGGFAAALINKPLWVMNVIPVEGEDTLSTIFDRGLIGIYHDWCESFNTYPRS 534
Query: 133 YDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190
YDLLH+ LF+ + + L VV E+DRILRP G L ++D E + ++ ++ SL W
Sbjct: 535 YDLLHSSFLFTNLSQRCDLMEVVVEIDRILRPGGYLAVQDTVEMLKKLNPILLSLRWS-- 592
Query: 191 MIYTNDNQGMLCVH-KTYWRP 210
TN +G V K+ WRP
Sbjct: 593 ---TNLYRGKFLVGLKSSWRP 610
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 13/206 (6%)
Query: 19 WPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY--LNGMGINWSFVRNVMD 76
+P RL P ++S G + + D + WK V K+Y +N + ++ RN+MD
Sbjct: 414 FPDRLNAVPPRISS--GSISGVTVDAYEDDNRQWKKHV-KAYKRINSL-LDTGRYRNIMD 469
Query: 77 MRAVYGGFAAALKDLKVWVMNVVP-IESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDL 135
M A +GGFAAAL+ K+WVMNVVP I + L ++YERGL G+YHDWCE+F+TYPRTYDL
Sbjct: 470 MNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDL 529
Query: 136 LHADHLFSTIKKSLKA--VVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY 193
+HA+HLFS K A ++ E+DRILRP+G +I+RDD +T+++V+ ++ + WD +++
Sbjct: 530 IHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVD 589
Query: 194 TNDN----QGMLCVHKTYWRPKETET 215
D + +L K YW T T
Sbjct: 590 HEDGPLVPEKVLIAVKQYWVTNSTST 615
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 117/177 (66%), Gaps = 5/177 (2%)
Query: 19 WPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMR 78
WP RL PP L + A E F A+ ++WK ++S +Y+N + +RNV+DMR
Sbjct: 468 WPARLLTPPDRLQTIQIDSYIARKELFVAESKYWKEIIS-NYVNALHWKQIGLRNVLDMR 526
Query: 79 AVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLL 136
A +GGFAAAL +LKV WV+NV+P+ P+TLP+IY+RGL G+ HDWCE F+TYPRTYDLL
Sbjct: 527 AGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLL 586
Query: 137 HADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM 191
HA LFS +K ++ ++ E+DRILRP G + +RD E++++ ++ W +
Sbjct: 587 HAAGLFSIERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSL 643
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 117/190 (61%), Gaps = 6/190 (3%)
Query: 12 GSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFV 71
G PL WP RL PP L + A E F A+ ++W ++ Y+ + +
Sbjct: 490 GGNVPL-WPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIG-GYVRALKWKKMKL 547
Query: 72 RNVMDMRAVYGGFAAALKD--LKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY 129
RNV+DMRA +GGFAAAL D L WV++VVP+ P+TLP+IY+RGL G+ HDWCE F+TY
Sbjct: 548 RNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTY 607
Query: 130 PRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW 187
PRTYD LHA LFS +K + ++ E+DRILRP G +RD + + E++++ K++ W
Sbjct: 608 PRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGW 667
Query: 188 DVRMIYTNDN 197
+ T++
Sbjct: 668 HTSLRDTSEG 677
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 221 | ||||||
| 224085019 | 381 | predicted protein [Populus trichocarpa] | 1.0 | 0.580 | 0.807 | 1e-104 | |
| 118485999 | 817 | unknown [Populus trichocarpa] | 1.0 | 0.270 | 0.775 | 1e-103 | |
| 255558498 | 802 | ATP binding protein, putative [Ricinus c | 1.0 | 0.275 | 0.775 | 1e-103 | |
| 224062976 | 421 | predicted protein [Populus trichocarpa] | 1.0 | 0.524 | 0.775 | 1e-101 | |
| 359492139 | 844 | PREDICTED: probable methyltransferase PM | 0.995 | 0.260 | 0.739 | 6e-97 | |
| 356518587 | 835 | PREDICTED: probable methyltransferase PM | 0.995 | 0.263 | 0.718 | 1e-96 | |
| 356509359 | 802 | PREDICTED: probable methyltransferase PM | 0.995 | 0.274 | 0.714 | 2e-96 | |
| 225431685 | 825 | PREDICTED: probable methyltransferase PM | 0.995 | 0.266 | 0.717 | 9e-96 | |
| 297793997 | 821 | hypothetical protein ARALYDRAFT_496597 [ | 0.995 | 0.267 | 0.717 | 1e-95 | |
| 296088518 | 761 | unnamed protein product [Vitis vinifera] | 0.995 | 0.289 | 0.717 | 1e-95 |
| >gi|224085019|ref|XP_002307464.1| predicted protein [Populus trichocarpa] gi|222856913|gb|EEE94460.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/223 (80%), Positives = 199/223 (89%), Gaps = 2/223 (0%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
MHKVP D S RGSRWP QWP RLEKPPYWLNS+ GVYGKAAPEDF ADY HWKNVVSKSY
Sbjct: 159 MHKVPEDASVRGSRWPEQWPQRLEKPPYWLNSQVGVYGKAAPEDFAADYGHWKNVVSKSY 218
Query: 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
LNGMGINWS VRN+MDMRAVYGGFAAALKDLKVWVMNVVPI+S DTLPIIYERGLFG+YH
Sbjct: 219 LNGMGINWSSVRNIMDMRAVYGGFAAALKDLKVWVMNVVPIDSADTLPIIYERGLFGMYH 278
Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEV 178
DWCESFNTYPRTYDLLHADHLFS++ K +L AV+AEVDRILRP+GNLI+RD+ E I E+
Sbjct: 279 DWCESFNTYPRTYDLLHADHLFSSLTKRCNLVAVIAEVDRILRPEGNLIVRDNVEIIGEI 338
Query: 179 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAMM 221
E L KSL+WD+RMIY+ DN+G+LCVHKT WRP E ETI SA++
Sbjct: 339 ESLAKSLNWDIRMIYSKDNEGLLCVHKTMWRPTEPETITSAII 381
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118485999|gb|ABK94843.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/223 (77%), Positives = 198/223 (88%), Gaps = 2/223 (0%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
MHKVPVD S RGS WP QWP RLEKPPYWLNS+ GVYGKAA EDF ADY+HWKNVVS+SY
Sbjct: 593 MHKVPVDASVRGSHWPEQWPKRLEKPPYWLNSQVGVYGKAAAEDFAADYKHWKNVVSQSY 652
Query: 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
LNG+GINWS VRN+MDMRAVYGGFAAALKDLKVWVMN+VPI+S DTLP+IYERGLFG+YH
Sbjct: 653 LNGIGINWSSVRNIMDMRAVYGGFAAALKDLKVWVMNIVPIDSADTLPMIYERGLFGMYH 712
Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEV 178
DWCESFNTYPRTYDLLHADHLFS++KK +L AV+AEVDRILRP+G LI+RD+ E I E+
Sbjct: 713 DWCESFNTYPRTYDLLHADHLFSSLKKRCNLVAVIAEVDRILRPEGKLIVRDNVEIIGEI 772
Query: 179 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAMM 221
E L KSL W++RMIY+ DN+G+LCV KT WRP E+ETI SA++
Sbjct: 773 ESLAKSLKWEIRMIYSKDNEGLLCVQKTTWRPTESETITSAII 815
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558498|ref|XP_002520274.1| ATP binding protein, putative [Ricinus communis] gi|223540493|gb|EEF42060.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/223 (77%), Positives = 196/223 (87%), Gaps = 2/223 (0%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
MHKVP D S+RGS+WP QWP RLE PPYWL S+ GVYGKAAPEDFTADY HWK+VVS+SY
Sbjct: 580 MHKVPEDSSERGSQWPEQWPQRLETPPYWLKSQVGVYGKAAPEDFTADYNHWKHVVSQSY 639
Query: 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
LNGMGI+WS VRN MDMRAVYGGFAAALKDLKVWVMN VPI+SPDTLPIIYERGLFG+YH
Sbjct: 640 LNGMGIDWSTVRNAMDMRAVYGGFAAALKDLKVWVMNTVPIDSPDTLPIIYERGLFGMYH 699
Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEV 178
DWCESFNTYPRTYDLLHADHLFS++KK +L AVVAEVDRILRP+G LI+RD+ + I E+
Sbjct: 700 DWCESFNTYPRTYDLLHADHLFSSLKKRCNLVAVVAEVDRILRPEGKLIVRDNVDIIGEI 759
Query: 179 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAMM 221
E + KSL W++RMIYT D++G+LCV KT WRP E ETI SA+M
Sbjct: 760 ESMAKSLKWEIRMIYTKDDEGLLCVRKTMWRPTEAETIKSAIM 802
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224062976|ref|XP_002300957.1| predicted protein [Populus trichocarpa] gi|222842683|gb|EEE80230.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/223 (77%), Positives = 198/223 (88%), Gaps = 2/223 (0%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
MHKVPVD S RGS WP QWP RLEKPPYWLNS+ GVYGKAA EDF ADY+HWKNVVS+SY
Sbjct: 197 MHKVPVDASVRGSHWPEQWPKRLEKPPYWLNSQVGVYGKAAAEDFAADYKHWKNVVSQSY 256
Query: 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
LNG+GINWS VRN+MDMRAVYGGFAAALKDLKVWVMN+VPI+S DTLP+IYERGLFG+YH
Sbjct: 257 LNGIGINWSSVRNIMDMRAVYGGFAAALKDLKVWVMNIVPIDSADTLPMIYERGLFGMYH 316
Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEV 178
DWCESFNTYPRTYDLLHADHLFS++KK +L AV+AEVDRILRP+G LI+RD+ E I E+
Sbjct: 317 DWCESFNTYPRTYDLLHADHLFSSLKKRCNLVAVIAEVDRILRPEGKLIVRDNVEIIGEI 376
Query: 179 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAMM 221
E L KSL W++RMIY+ DN+G+LCV KT WRP E+ETI SA++
Sbjct: 377 ESLAKSLKWEIRMIYSKDNEGLLCVQKTTWRPTESETITSAII 419
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492139|ref|XP_002285889.2| PREDICTED: probable methyltransferase PMT26-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 358 bits (920), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 165/223 (73%), Positives = 193/223 (86%), Gaps = 3/223 (1%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWL-NSEAGVYGKAAPEDFTADYQHWKNVVSKS 59
MHKVPV S+RGS+WP QWPLR+EK P WL +S+ GVYGKAAPEDFT+DY+HWK VVS S
Sbjct: 621 MHKVPVLTSERGSQWPEQWPLRVEKAPNWLKSSQVGVYGKAAPEDFTSDYEHWKTVVSSS 680
Query: 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
YL GMGI WS VRNVMDM+AVYGGFAAALKDLKVWVMNVVPI SPDTLPII+ERGLFG+Y
Sbjct: 681 YLKGMGIKWSSVRNVMDMKAVYGGFAAALKDLKVWVMNVVPINSPDTLPIIFERGLFGIY 740
Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVE 177
HDWCESF+TYPR+YDL+HADHLFS +KK L AV+AEVDRILRP+G LI+RD+ ET+ E
Sbjct: 741 HDWCESFSTYPRSYDLVHADHLFSDLKKRCQLTAVIAEVDRILRPEGMLIVRDNVETVSE 800
Query: 178 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 220
VE + KSL W+VR+ Y+ D +G+LCV KT+WRP ET+TI SA+
Sbjct: 801 VESMAKSLQWEVRLTYSKDKEGLLCVKKTFWRPTETQTIKSAI 843
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518587|ref|XP_003527960.1| PREDICTED: probable methyltransferase PMT26-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 161/224 (71%), Positives = 194/224 (86%), Gaps = 4/224 (1%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
MHKVPVD S+RGS WP QWPLRLEKPPYW++S+AGVYG+AA +FTADY+HWKNV+S Y
Sbjct: 611 MHKVPVDASERGSIWPEQWPLRLEKPPYWIDSQAGVYGRAASVEFTADYKHWKNVISHLY 670
Query: 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGL 118
LNGMGINWS VRNVMDM+AVYGGFAAAL+ LK VWVMNVVPI+SPDTLPIIYERGLFG+
Sbjct: 671 LNGMGINWSSVRNVMDMKAVYGGFAAALRALKLNVWVMNVVPIDSPDTLPIIYERGLFGI 730
Query: 119 YHDWCESFNTYPRTYDLLHADHLFSTIKKSLK--AVVAEVDRILRPDGNLILRDDAETIV 176
YHDWCESFNTYPR+YDLLHAD +FST+K+ AV+AEVDRILRP+G L++RD+ ETI
Sbjct: 731 YHDWCESFNTYPRSYDLLHADSIFSTLKEKCNKVAVIAEVDRILRPEGYLVIRDNVETIG 790
Query: 177 EVEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 220
E+E L KSL WD+R+ Y+ + +G+LC+ KT+WRP + ET+ SA+
Sbjct: 791 EIESLAKSLQWDIRLTYSKNGEGLLCIQKTFWRPTKVETVASAI 834
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509359|ref|XP_003523417.1| PREDICTED: probable methyltransferase PMT25-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 160/224 (71%), Positives = 194/224 (86%), Gaps = 4/224 (1%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
MHKVPVD S+RGS WP QWPLRLEKPPYW++S+AGVYG+AA +FTADY+HWKNV+S SY
Sbjct: 578 MHKVPVDASERGSIWPEQWPLRLEKPPYWIDSQAGVYGRAASVEFTADYKHWKNVISHSY 637
Query: 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGL 118
LNGMGINWS VRNVMDM+AVYGGFAAAL+ LK VWVMNVVPI+SPDTLPIIYERGLFG+
Sbjct: 638 LNGMGINWSSVRNVMDMKAVYGGFAAALRALKVNVWVMNVVPIDSPDTLPIIYERGLFGI 697
Query: 119 YHDWCESFNTYPRTYDLLHADHLFSTIKKSLK--AVVAEVDRILRPDGNLILRDDAETIV 176
YHDWCES NTYPR+YDLLHAD +FST+K+ AV+AEVDRILRP+G L++RD+ ETI
Sbjct: 698 YHDWCESLNTYPRSYDLLHADSIFSTLKEKCNILAVIAEVDRILRPEGYLVIRDNVETIG 757
Query: 177 EVEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 220
E+E + KSLHWD+++ Y+ + +G LC+ KT+WRP + ET+ SA+
Sbjct: 758 EIESMAKSLHWDIQLTYSKNGEGFLCIQKTFWRPTKVETVASAI 801
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431685|ref|XP_002266357.1| PREDICTED: probable methyltransferase PMT26-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 355 bits (910), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 160/223 (71%), Positives = 194/223 (86%), Gaps = 3/223 (1%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWL-NSEAGVYGKAAPEDFTADYQHWKNVVSKS 59
MHKVPVD SKRGS+WP WP RL+K PYWL +S+ GVYG+AAPEDFTADY+HWK VV++S
Sbjct: 602 MHKVPVDASKRGSQWPELWPARLDKSPYWLTSSQVGVYGRAAPEDFTADYEHWKRVVAQS 661
Query: 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
YLNG+GI+WS VRNVMDMRAVYGGFAAAL+DL VWVMNVV I+SPDTLPIIYERGLFG+Y
Sbjct: 662 YLNGIGISWSSVRNVMDMRAVYGGFAAALRDLNVWVMNVVSIDSPDTLPIIYERGLFGIY 721
Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVE 177
H+WCESFNTYPR+YDLLHADH+FS KK +L AV+AE DRILRP+G LI+RDD ET+ +
Sbjct: 722 HNWCESFNTYPRSYDLLHADHIFSKTKKKCNLVAVIAEADRILRPEGKLIVRDDVETLGQ 781
Query: 178 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 220
VE++++S+HW++RM Y+ + +G+LC KT WRPKE E I SA+
Sbjct: 782 VENMLRSMHWEIRMTYSKEKEGLLCAQKTMWRPKEMEIIKSAI 824
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297793997|ref|XP_002864883.1| hypothetical protein ARALYDRAFT_496597 [Arabidopsis lyrata subsp. lyrata] gi|297310718|gb|EFH41142.1| hypothetical protein ARALYDRAFT_496597 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 160/223 (71%), Positives = 195/223 (87%), Gaps = 3/223 (1%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNS-EAGVYGKAAPEDFTADYQHWKNVVSKS 59
MH P DK++RGS+WP QWP RLEKPP+WL+S + GVYGKAAPEDF+ADY+HWK VVSKS
Sbjct: 598 MHTAPEDKTQRGSQWPEQWPARLEKPPFWLSSSQTGVYGKAAPEDFSADYEHWKRVVSKS 657
Query: 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
YL G+GINW+ VRNVMDMRAVYGGFAAAL++LKVWVMNVVPI+SPDTL IIYERGLFG+Y
Sbjct: 658 YLKGLGINWASVRNVMDMRAVYGGFAAALRELKVWVMNVVPIDSPDTLAIIYERGLFGIY 717
Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVE 177
HDWCESF+TYPR+YDLLHADHLFS +K+ +L AV+AEVDR+LRP+G LI+RDDAETI E
Sbjct: 718 HDWCESFSTYPRSYDLLHADHLFSRLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAETIQE 777
Query: 178 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 220
VE +VK++ W+VRM Y+ + +G+L V K++WRP E ET+ A+
Sbjct: 778 VEAMVKAMKWEVRMTYSREKEGLLSVQKSFWRPNEVETLTYAI 820
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088518|emb|CBI37509.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 160/223 (71%), Positives = 194/223 (86%), Gaps = 3/223 (1%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWL-NSEAGVYGKAAPEDFTADYQHWKNVVSKS 59
MHKVPVD SKRGS+WP WP RL+K PYWL +S+ GVYG+AAPEDFTADY+HWK VV++S
Sbjct: 538 MHKVPVDASKRGSQWPELWPARLDKSPYWLTSSQVGVYGRAAPEDFTADYEHWKRVVAQS 597
Query: 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
YLNG+GI+WS VRNVMDMRAVYGGFAAAL+DL VWVMNVV I+SPDTLPIIYERGLFG+Y
Sbjct: 598 YLNGIGISWSSVRNVMDMRAVYGGFAAALRDLNVWVMNVVSIDSPDTLPIIYERGLFGIY 657
Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVE 177
H+WCESFNTYPR+YDLLHADH+FS KK +L AV+AE DRILRP+G LI+RDD ET+ +
Sbjct: 658 HNWCESFNTYPRSYDLLHADHIFSKTKKKCNLVAVIAEADRILRPEGKLIVRDDVETLGQ 717
Query: 178 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 220
VE++++S+HW++RM Y+ + +G+LC KT WRPKE E I SA+
Sbjct: 718 VENMLRSMHWEIRMTYSKEKEGLLCAQKTMWRPKEMEIIKSAI 760
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 221 | ||||||
| TAIR|locus:2160806 | 829 | AT5G64030 [Arabidopsis thalian | 0.995 | 0.265 | 0.713 | 5.1e-90 | |
| TAIR|locus:2013628 | 770 | AT1G29470 [Arabidopsis thalian | 0.995 | 0.285 | 0.711 | 1.1e-87 | |
| TAIR|locus:2040864 | 770 | AT2G34300 [Arabidopsis thalian | 0.995 | 0.285 | 0.702 | 1.8e-87 | |
| TAIR|locus:2080823 | 895 | AT3G51070 [Arabidopsis thalian | 0.968 | 0.239 | 0.663 | 1.2e-81 | |
| TAIR|locus:2016392 | 724 | AT1G19430 [Arabidopsis thalian | 0.909 | 0.277 | 0.525 | 3e-62 | |
| TAIR|locus:2063078 | 589 | AT2G40280 [Arabidopsis thalian | 0.850 | 0.319 | 0.482 | 1.4e-46 | |
| TAIR|locus:2202805 | 616 | AT1G26850 [Arabidopsis thalian | 0.873 | 0.313 | 0.427 | 1.2e-40 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.746 | 0.241 | 0.471 | 2.3e-40 | |
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.828 | 0.263 | 0.428 | 1.1e-37 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.746 | 0.251 | 0.460 | 4.4e-37 |
| TAIR|locus:2160806 AT5G64030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 159/223 (71%), Positives = 194/223 (86%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNS-EAGVYGKAAPEDFTADYQHWKNVVSKS 59
MH P DK++RGS+WP QWP RLEK P+WL+S + GVYGKAAPEDF+ADY+HWK VV+KS
Sbjct: 606 MHTAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTKS 665
Query: 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
YLNG+GINW+ VRNVMDMRAVYGGFAAAL+DLKVWVMNVVPI+SPDTL IIYERGLFG+Y
Sbjct: 666 YLNGLGINWASVRNVMDMRAVYGGFAAALRDLKVWVMNVVPIDSPDTLAIIYERGLFGIY 725
Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVE 177
HDWCESF+TYPR+YDLLHADHLFS +K+ +L AV+AEVDR+LRP+G LI+RDDAETI +
Sbjct: 726 HDWCESFSTYPRSYDLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAETIQQ 785
Query: 178 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 220
VE +VK++ W+VRM Y+ + +G+L V K+ WRP E ET+ A+
Sbjct: 786 VEGMVKAMKWEVRMTYSKEKEGLLSVQKSIWRPSEVETLTYAI 828
|
|
| TAIR|locus:2013628 AT1G29470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
Identities = 158/222 (71%), Positives = 188/222 (84%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
+HKV D SKRG+ WP WP R+E P WL+S+ GVYGK A EDFTAD++ WK +VSKSY
Sbjct: 548 IHKVTEDSSKRGAVWPESWPERVETVPQWLDSQEGVYGKPAQEDFTADHERWKTIVSKSY 607
Query: 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
LNGMGI+WS+VRNVMDMRAVYGGFAAALKDLK+WVMNVVPI+SPDTLPIIYERGLFG+YH
Sbjct: 608 LNGMGIDWSYVRNVMDMRAVYGGFAAALKDLKLWVMNVVPIDSPDTLPIIYERGLFGIYH 667
Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEV 178
DWCESF+TYPRTYDLLHADHLFS++KK +L V+AEVDRILRP G I+RDD ETI E+
Sbjct: 668 DWCESFSTYPRTYDLLHADHLFSSLKKRCNLVGVMAEVDRILRPQGTFIVRDDMETIGEI 727
Query: 179 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 220
E +VKS+ W+VRM ++ D +G+L V K++WRP E ETI SA+
Sbjct: 728 EKMVKSMKWNVRMTHSKDGEGLLSVQKSWWRPTEAETIQSAI 769
|
|
| TAIR|locus:2040864 AT2G34300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 156/222 (70%), Positives = 188/222 (84%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
MHKV D SKRG+ WP WP R+E P WL+S+ GVYGK APEDFTAD + WK +VSK+Y
Sbjct: 548 MHKVTEDSSKRGAVWPNMWPERVETAPEWLDSQEGVYGKPAPEDFTADQEKWKTIVSKAY 607
Query: 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
LN MGI+WS VRNVMDMRAVYGGFAAALKDLK+WVMNVVP+++PDTLPIIYERGLFG+YH
Sbjct: 608 LNDMGIDWSNVRNVMDMRAVYGGFAAALKDLKLWVMNVVPVDAPDTLPIIYERGLFGIYH 667
Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEV 178
DWCESFNTYPRTYDLLHADHLFST++K +L +V+AE+DRILRP G I+RDD ET+ EV
Sbjct: 668 DWCESFNTYPRTYDLLHADHLFSTLRKRCNLVSVMAEIDRILRPQGTFIIRDDMETLGEV 727
Query: 179 EDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 220
E +VKS+ W V+M + DN+G+L + K++WRP+ETETI SA+
Sbjct: 728 EKMVKSMKWKVKMTQSKDNEGLLSIEKSWWRPEETETIKSAI 769
|
|
| TAIR|locus:2080823 AT3G51070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 144/217 (66%), Positives = 180/217 (82%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNS-EAGVYGKAAPEDFTADYQHWKNVVSKS 59
MHKVP + +RGS+WP+ WP RL+ PPYWLNS + G+YGK AP DFT DY+HWK+VVSK
Sbjct: 679 MHKVPTNVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRDFTTDYEHWKHVVSKV 738
Query: 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
Y+N +GI+WS VRNVMDMRAVYGGFAAALKDL+VWVMNVV I SPDTLPIIYERGLFG+Y
Sbjct: 739 YMNEIGISWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNINSPDTLPIIYERGLFGIY 798
Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVE 177
HDWCESF+TYPR+YDLLHADHLFS ++ +L V+AEVDRI+RP G LI+RD++ I E
Sbjct: 799 HDWCESFSTYPRSYDLLHADHLFSKLRTRCNLVPVMAEVDRIVRPGGKLIVRDESNVIRE 858
Query: 178 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETE 214
VE+++KSLHWDV + ++ +G+L K +WRP+ ++
Sbjct: 859 VENMLKSLHWDVHLTFSKHQEGILSAQKGFWRPETSQ 895
|
|
| TAIR|locus:2016392 AT1G19430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 112/213 (52%), Positives = 147/213 (69%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
++++P + G+ WP +WP RLE P WL S+ E D HW +V+KSY
Sbjct: 521 IYEIPSAIEQHGAEWPEEWPKRLETYPEWLTSK---------EKAMEDTNHWNAMVNKSY 571
Query: 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH 120
L G+GI+W +RNVMDM A+YGGF A+L VWVMNVVP+ SPDTLP IYERGL G+YH
Sbjct: 572 LTGLGIDWLHIRNVMDMTAIYGGFGASLVKQNVWVMNVVPVHSPDTLPFIYERGLLGIYH 631
Query: 121 DWCESFNTYPRTYDLLHADHLFSTIKKSLK---AVVAEVDRILRPDGNLILRDDAETIVE 177
DWCE F TYPR+YDLLHADHLFS +K K ++V E+DR+ RP G +++RD E +
Sbjct: 632 DWCEPFGTYPRSYDLLHADHLFSRLKNRCKQPASIVVEMDRLTRPGGWVVVRDKVEILEP 691
Query: 178 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRP 210
+E++++SLHW++RM Y D +GMLC KT WRP
Sbjct: 692 LEEILRSLHWEIRMTYAQDKEGMLCAQKTLWRP 724
|
|
| TAIR|locus:2063078 AT2G40280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 98/203 (48%), Positives = 131/203 (64%)
Query: 15 WPLQWPLRLEK-PPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRN 73
WP WP RL P ++ +A E D + W VS YL + +NWS VRN
Sbjct: 397 WPELWPKRLVSVKPQSISVKA--------ETLKKDTEKWSASVSDVYLKHLAVNWSTVRN 448
Query: 74 VMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTY 133
VMDM A +GGFAAAL +L +WVMNVVP++ PDTL ++Y+RGL G+YHDWCES NTYPRTY
Sbjct: 449 VMDMNAGFGGFAAALINLPLWVMNVVPVDKPDTLSVVYDRGLIGVYHDWCESVNTYPRTY 508
Query: 134 DLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM 191
DLLH+ L + + + VVAE+DRI+RP G L+++D+ ETI+++E ++ SLHW +
Sbjct: 509 DLLHSSFLLGDLTQRCEIVQVVAEIDRIVRPGGYLVVQDNMETIMKLESILGSLHWSTK- 567
Query: 192 IYTNDNQGMLCVHKTYWRPKETE 214
IY D L K +WRP + E
Sbjct: 568 IY-EDR--FLVGRKGFWRPAKPE 587
|
|
| TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 88/206 (42%), Positives = 130/206 (63%)
Query: 19 WPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY--LNGMGINWSFVRNVMD 76
+P RL P ++S G + + D + WK V K+Y +N + ++ RN+MD
Sbjct: 414 FPDRLNAVPPRISS--GSISGVTVDAYEDDNRQWKKHV-KAYKRINSL-LDTGRYRNIMD 469
Query: 77 MRAVYGGFAAALKDLKVWVMNVVP-IESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDL 135
M A +GGFAAAL+ K+WVMNVVP I + L ++YERGL G+YHDWCE+F+TYPRTYDL
Sbjct: 470 MNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDL 529
Query: 136 LHADHLFSTIKKSLKA--VVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY 193
+HA+HLFS K A ++ E+DRILRP+G +I+RDD +T+++V+ ++ + WD +++
Sbjct: 530 IHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVD 589
Query: 194 TNDN----QGMLCVHKTYWRPKETET 215
D + +L K YW T T
Sbjct: 590 HEDGPLVPEKVLIAVKQYWVTNSTST 615
|
|
| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 83/176 (47%), Positives = 120/176 (68%)
Query: 19 WPLRLEKPPYWLNS-EAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFV--RNVM 75
WP RL PP L + + Y A E F A+ ++WK ++S +Y+N + +W + RNV+
Sbjct: 468 WPARLLTPPDRLQTIQIDSY-IARKELFVAESKYWKEIIS-NYVNAL--HWKQIGLRNVL 523
Query: 76 DMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTY 133
DMRA +GGFAAAL +LKV WV+NV+P+ P+TLP+IY+RGL G+ HDWCE F+TYPRTY
Sbjct: 524 DMRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTY 583
Query: 134 DLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW 187
DLLHA LFS +K ++ ++ E+DRILRP G + +RD E++++ ++ W
Sbjct: 584 DLLHAAGLFSIERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRW 639
|
|
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 410 (149.4 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 81/189 (42%), Positives = 118/189 (62%)
Query: 12 GSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFV 71
G PL WP RL PP L + A E F A+ ++W ++ Y+ + +
Sbjct: 490 GGNVPL-WPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIG-GYVRALKWKKMKL 547
Query: 72 RNVMDMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY 129
RNV+DMRA +GGFAAAL D K+ WV++VVP+ P+TLP+IY+RGL G+ HDWCE F+TY
Sbjct: 548 RNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTY 607
Query: 130 PRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW 187
PRTYD LHA LFS +K + ++ E+DRILRP G +RD + + E++++ K++ W
Sbjct: 608 PRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGW 667
Query: 188 DVRMIYTND 196
+ T++
Sbjct: 668 HTSLRDTSE 676
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 383 (139.9 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 81/176 (46%), Positives = 114/176 (64%)
Query: 19 WPLRLEKPPYWLNS-EAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWS-F-VRNVM 75
WP RL PP L S + Y + E A+ + W VV +SY+ W F +RNV+
Sbjct: 460 WPARLHDPPERLQSIQMDAY-ISRKEIMKAESRFWLEVV-ESYVRVF--RWKEFKLRNVL 515
Query: 76 DMRAVYGGFAAALKDLKV--WVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTY 133
DMRA +GGFAAAL DL + WVMN+VP+ +TLP+IY+RGL G HDWCE F+TYPRTY
Sbjct: 516 DMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTY 575
Query: 134 DLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW 187
DL+HA LFS KK ++ ++ E+DR+LRP G++ +RD + +++ + K++ W
Sbjct: 576 DLIHAAFLFSVEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAIGW 631
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8L7V3 | PMTQ_ARATH | 2, ., 1, ., 1, ., - | 0.7130 | 0.9954 | 0.2653 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 221 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 1e-102 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 304 bits (781), Expect = e-102
Identities = 109/222 (49%), Positives = 141/222 (63%), Gaps = 17/222 (7%)
Query: 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSY 60
+ +P + G W +WP RL P L S G G + E F AD + WK VSK
Sbjct: 297 ITPLPEVSHEVGGGWLEKWPERLTAVPPRLAS--GQIGGVSAEAFKADTELWKRRVSKYK 354
Query: 61 -LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY 119
L + I+ VRNVMDM A +GGFAAAL D VWVMNVVP++SPDTLP+IY+RGL G+Y
Sbjct: 355 RLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYDRGLIGIY 414
Query: 120 HDWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAETIVE 177
HDWCE F+TYPRTYDLLHADHLFS KK +L+ ++ E+DRILRP G +I+RDD + + +
Sbjct: 415 HDWCEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRDDVDVLDK 474
Query: 178 VEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPKETETILSA 219
V+ + K++ W+VR+ T D P + E IL A
Sbjct: 475 VKKIAKAMRWEVRITDTEDG------------PHDPEKILIA 504
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 221 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.72 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.72 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.65 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.62 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.59 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.57 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.52 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.51 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.51 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.5 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.47 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.45 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.44 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.44 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.43 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.43 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.43 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.42 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.41 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.41 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.41 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.41 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.4 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.39 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.39 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.39 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.39 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.38 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.38 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.37 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.37 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.33 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.31 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.3 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.3 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.3 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.29 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.27 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.26 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.25 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.25 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.25 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.25 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.24 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.23 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.22 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.22 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.21 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.21 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.21 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.2 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.18 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.18 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.18 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.18 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.16 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.14 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.14 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.1 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.1 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.09 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.09 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.09 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.08 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.07 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.07 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.06 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.05 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.05 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.05 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.05 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.04 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.04 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.03 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.01 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.01 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.01 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.0 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.0 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.98 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.98 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.97 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.95 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.93 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.93 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.91 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.91 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.9 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.88 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.87 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.85 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.84 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.84 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.84 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.83 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.82 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.8 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.8 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.79 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.78 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.78 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.73 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.73 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.7 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.7 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.67 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.67 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.66 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.66 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.65 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.65 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.64 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.62 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.62 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.55 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.55 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.55 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.53 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.52 | |
| PLN02366 | 308 | spermidine synthase | 98.51 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.5 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.5 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.5 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.49 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.46 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.45 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.44 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.4 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.36 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.35 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.3 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.3 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.29 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.28 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.25 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.25 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.21 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.19 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.15 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.15 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.12 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.12 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.08 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.05 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.05 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.05 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.01 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.0 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.98 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.91 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.89 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 97.85 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.82 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.82 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.78 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.77 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.72 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.69 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.66 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.63 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.63 | |
| PLN02476 | 278 | O-methyltransferase | 97.61 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.61 | |
| PLN02823 | 336 | spermine synthase | 97.59 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.57 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.55 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.55 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.54 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.54 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.54 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.49 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.45 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.44 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.4 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.36 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.35 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.3 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.3 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.28 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.24 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.23 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.18 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.12 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.09 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.03 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.0 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 96.97 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 96.84 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 96.71 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.67 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 96.59 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 96.56 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 96.56 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 96.5 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 96.49 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 96.44 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 96.36 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.35 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 96.34 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.31 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.25 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.25 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.13 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.08 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 95.99 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 95.92 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 95.88 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 95.86 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 95.69 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 95.49 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 95.29 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.21 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.2 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 95.15 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 95.07 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.0 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 94.97 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 94.96 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 94.36 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 94.34 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.99 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 93.9 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 93.86 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 92.82 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 92.8 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 92.36 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 92.33 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 92.21 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 91.98 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 91.94 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 91.86 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 91.73 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 91.53 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 91.46 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 91.45 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 91.37 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 91.29 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 91.27 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 90.9 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 90.71 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 90.28 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 88.39 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 87.98 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 87.79 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 87.75 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 87.67 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 85.49 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 84.57 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 84.27 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 83.9 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 83.75 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 83.71 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 82.88 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 82.28 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 82.15 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 81.53 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-63 Score=468.83 Aligned_cols=202 Identities=50% Similarity=0.935 Sum_probs=190.9
Q ss_pred CccCCCCCCCCCCCCCCCCCccCCCCCcccccccCccCCCCcccchhhhhhhHHHHHhhhhhccc--CCCCCCCeEEeec
Q 027609 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMG--INWSFVRNVMDMR 78 (221)
Q Consensus 1 ~~~~p~~~~~~~~~~p~~WP~rl~~~p~rl~~~~~~~~~~~~~~f~~d~~~W~~~v~~~Y~~~L~--i~~~~~r~VLD~G 78 (221)
||++|++++..+.+++++||+||+++|+||++.. +.+.+.|.|.+|+++|+++|++ |+.+++ |+++++||||||+
T Consensus 297 it~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~--~~g~~~e~F~~Dt~~Wk~~V~~-Y~~l~~~~i~~~~iRNVMDMn 373 (506)
T PF03141_consen 297 ITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGS--IPGISPEEFKEDTKHWKKRVSH-YKKLLGLAIKWGRIRNVMDMN 373 (506)
T ss_pred cCcCCcccccccccCCCCChhhhccCchhhhcCC--cCCCCHHHHHHHHHHHHHHHHH-HHHhhcccccccceeeeeeec
Confidence 6899999888899999999999999999999711 2346899999999999999998 887776 8999999999999
Q ss_pred CcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCCCccCeeeeccccccccc--cHHHHHHHh
Q 027609 79 AVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEV 156 (221)
Q Consensus 79 cG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~--d~~~vL~Em 156 (221)
+|+|||||+|.+++||||||+|+..+++|++|++|||||+||||||+|+||||||||||++.+|+++.+ +.+++|+||
T Consensus 374 Ag~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEm 453 (506)
T PF03141_consen 374 AGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEM 453 (506)
T ss_pred ccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 999999999
Q ss_pred hhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEeecCC----CeeEEEEEe
Q 027609 157 DRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTND----NQGMLCVHK 205 (221)
Q Consensus 157 dRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~----~e~~l~~~K 205 (221)
||||||||++||||..+++++|++++++|+|++.+.++++ +||||+|||
T Consensus 454 DRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 454 DRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 9999999999999999999999999999999999999876 799999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=301.28 Aligned_cols=194 Identities=21% Similarity=0.330 Sum_probs=162.6
Q ss_pred CCCCCCCCCCCCccC------CCCCcccccccCc--cCCCC--cccchhhhhhhHHHHHhhhhhccc----C--CCCCCC
Q 027609 9 SKRGSRWPLQWPLRL------EKPPYWLNSEAGV--YGKAA--PEDFTADYQHWKNVVSKSYLNGMG----I--NWSFVR 72 (221)
Q Consensus 9 ~~~~~~~p~~WP~rl------~~~p~rl~~~~~~--~~~~~--~~~f~~d~~~W~~~v~~~Y~~~L~----i--~~~~~r 72 (221)
.++||+.|.+||+++ |+|+++|++.|+. |-+.+ .-.|......|.+.|.+ |.+.|. + ..+.+|
T Consensus 41 ~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~-Yid~i~~~~~~~~~~g~iR 119 (506)
T PF03141_consen 41 PPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADH-YIDQIAEMIPLIKWGGGIR 119 (506)
T ss_pred CCccCCCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHH-HHHHHHHHhhccccCCceE
Confidence 356999999999999 8899999987665 22222 22366788889999988 997665 3 557899
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeeccccccccccHH
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKSLK 150 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d~~ 150 (221)
.+||+|||+|+|||+|++++|.+|+++|.|.+ .++|+|.|||++.++.-.+..-.||| ++||+|||++|+..|..+-+
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g 199 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDG 199 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhccc
Confidence 99999999999999999999999999999986 59999999999887665433344687 99999999999999998778
Q ss_pred HHHHHhhhhccCCeEEEEEcC----------hhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEecc
Q 027609 151 AVVAEVDRILRPDGNLILRDD----------AETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKTY 207 (221)
Q Consensus 151 ~vL~EmdRVLRPGG~~ii~d~----------~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K~~ 207 (221)
.+|.|+|||||||||||++.+ ...+++|++++++|||+.... +..+.|+||+.
T Consensus 200 ~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~----~~~~aIwqKp~ 262 (506)
T PF03141_consen 200 FLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE----KGDTAIWQKPT 262 (506)
T ss_pred ceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee----eCCEEEEeccC
Confidence 999999999999999999954 346899999999999998765 34499999975
|
; GO: 0008168 methyltransferase activity |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.2e-18 Score=122.26 Aligned_cols=89 Identities=25% Similarity=0.450 Sum_probs=70.3
Q ss_pred EeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccc---ee-ccccccCCCCC-CccCeeeecccccccccc
Q 027609 75 MDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFG---LY-HDWCESFNTYP-RTYDLLHADHLFSTIKKS 148 (221)
Q Consensus 75 LD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~---~~-~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d 148 (221)
||+|||+|.++..|++++. .+++++|.+ ++++.+.++.... .. .| .+.+ +|| ++||+|+|..+++|+. +
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d-~~~l-~~~~~sfD~v~~~~~~~~~~-~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGD-AEDL-PFPDNSFDVVFSNSVLHHLE-D 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESB-TTSS-SS-TT-EEEEEEESHGGGSS-H
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeeh-HHhC-ccccccccccccccceeecc-C
Confidence 8999999999999999932 257888886 5899888885432 22 34 3445 576 9999999999999996 8
Q ss_pred HHHHHHHhhhhccCCeEEEE
Q 027609 149 LKAVVAEVDRILRPDGNLIL 168 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii 168 (221)
+..++.|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-17 Score=146.94 Aligned_cols=115 Identities=18% Similarity=0.303 Sum_probs=92.0
Q ss_pred hhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcc------ceecc
Q 027609 49 YQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLF------GLYHD 121 (221)
Q Consensus 49 ~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~------~~~~d 121 (221)
.+.|++..-. .+.+. +..+|||++||+|-+|..+++..- ...++++|.+ +||+.+.+|-.- ..++.
T Consensus 36 ~~~Wr~~~i~----~~~~~--~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~ 108 (238)
T COG2226 36 HRLWRRALIS----LLGIK--PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108 (238)
T ss_pred hHHHHHHHHH----hhCCC--CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEe
Confidence 3678776643 23222 689999999999999999998732 4578999997 599999999431 12333
Q ss_pred ccccCCCCC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 122 WCESFNTYP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 122 ~~e~f~~yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
-+|.+| || +|||+|.|+..|.+.. |+..+|.||.|||||||.+++-|..
T Consensus 109 dAe~LP-f~D~sFD~vt~~fglrnv~-d~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 109 DAENLP-FPDNSFDAVTISFGLRNVT-DIDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred chhhCC-CCCCccCEEEeeehhhcCC-CHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 366675 88 9999999999999999 9999999999999999999988653
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-16 Score=138.76 Aligned_cols=116 Identities=17% Similarity=0.284 Sum_probs=75.5
Q ss_pred hhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c--cceecc
Q 027609 49 YQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L--FGLYHD 121 (221)
Q Consensus 49 ~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l--~~~~~d 121 (221)
.+.|++.+.. .++ .....+|||+|||+|-++..|+++-.....|+++|.+ +||+.+.+|. . +..+..
T Consensus 32 ~~~wr~~~~~----~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 32 DRRWRRKLIK----LLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp -----SHHHH----HHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHHh----ccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 3678876644 222 3346699999999999999998763223368999997 5999998872 2 122232
Q ss_pred ccccCCCCC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 122 WCESFNTYP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 122 ~~e~f~~yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
-+|.+ ||| +|||.|.|+..+++++ |+..+|.||.|||||||.+++-|-.
T Consensus 106 da~~l-p~~d~sfD~v~~~fglrn~~-d~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 106 DAEDL-PFPDNSFDAVTCSFGLRNFP-DRERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp BTTB---S-TT-EEEEEEES-GGG-S-SHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CHHHh-cCCCCceeEEEHHhhHHhhC-CHHHHHHHHHHHcCCCeEEEEeecc
Confidence 25555 477 9999999999999898 8999999999999999999988743
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=134.77 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=78.1
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcC-------ccc--eeccccccCCCCC-CccCeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERG-------LFG--LYHDWCESFNTYP-RTYDLLH 137 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRG-------l~~--~~~d~~e~f~~yp-~sFDlVh 137 (221)
...+|||+|||+|.++..|+++ +.. .+++++|.+ +|++.+.+|. ... .+..-++.+ +|+ ++||+|.
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~ 150 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAIT 150 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEE
Confidence 3678999999999999988875 321 267899987 5999987762 111 222223444 477 8999999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
|+.+++|++ |+..+|.|+.|||||||.+++.|-
T Consensus 151 ~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 151 MGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EecccccCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 999999998 899999999999999999999864
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-16 Score=122.69 Aligned_cols=96 Identities=20% Similarity=0.360 Sum_probs=75.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeecccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIK 146 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~ 146 (221)
....+|||+|||+|.++..|++.+. +++++|.+ .+++. +-.....++- ....++ ++||+|+|..+|+|++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~--~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDA--QDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEEC--HTHHCHSSSEEEEEEESSGGGSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhh--hhhhccccchhhHhhHHHHhhcc
Confidence 4578999999999999999999876 57888876 36655 2222222221 122345 9999999999999999
Q ss_pred ccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 147 KSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 147 ~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
|+..+|.++.|+|||||++++.+...
T Consensus 93 -d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 93 -DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp -HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred -cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 89999999999999999999998763
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.8e-15 Score=128.30 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=79.9
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCCCccCeeeecccccc
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFST 144 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h 144 (221)
+......+|||+|||+|.++..|+++.. ..+++++|.+ .|++.+.++++--...|. +.++ .+++||+|+|+.+|+|
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~ 101 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQW 101 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhh
Confidence 4444568999999999999999988721 1257899986 599999988653233442 3332 2389999999999999
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++ |+..+|.|+.|+|||||++++..
T Consensus 102 ~~-d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 102 VP-EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CC-CHHHHHHHHHHhCCCCcEEEEEc
Confidence 88 89999999999999999999974
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-14 Score=122.64 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=78.2
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-cce-eccccccCCCCC-CccCeeeecccc
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-FGL-YHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-~~~-~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
......+|||+|||+|.++..|.+++. +++++|.+ +|++.+.++.. ... ..|. +.+ +|+ ++||+|.|+.++
T Consensus 39 ~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~-~~~~~~fD~V~s~~~l 113 (251)
T PRK10258 39 PQRKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESL-PLATATFDLAWSNLAV 113 (251)
T ss_pred CccCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccC-cCCCCcEEEEEECchh
Confidence 334578899999999999999988763 56888886 59999988853 122 2343 334 466 899999999888
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++.. |+..+|.|+.|+|||||.++++.
T Consensus 114 ~~~~-d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 114 QWCG-NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred hhcC-CHHHHHHHHHHHcCCCeEEEEEe
Confidence 8666 89999999999999999999985
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-14 Score=129.74 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=75.2
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHH----cCccc----eeccccccCCCCC-CccCeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYE----RGLFG----LYHDWCESFNTYP-RTYDLLH 137 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~e----RGl~~----~~~d~~e~f~~yp-~sFDlVh 137 (221)
....+|||+|||+|.++..|+++ +. +|+++|.+ .|++.+.+ +|+.. ...|. +.+ +|+ ++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~-~~~-~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADA-LNQ-PFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc-ccC-CCCCCCccEEE
Confidence 45678999999999999999886 43 56888876 47765544 35532 22343 223 466 9999999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|..+++|+. |+..+|.|+.|+|||||.+++.+
T Consensus 192 s~~~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMP-DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999 89999999999999999999975
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-14 Score=131.09 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=78.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c---cceeccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L---FGLYHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l---~~~~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|+..+. +|+++|.+ ++++.+.++. + +..++.-++.++ ++ ++||+|.|..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~~~~FD~Vi~~~ 206 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DEGRKFDAVLSLE 206 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hccCCCCEEEEhh
Confidence 456899999999999999988764 56899986 5999887652 1 112222133343 44 8999999999
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+++|+. |+..+|.|+.|+|||||.+++++.+
T Consensus 207 vLeHv~-d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 207 VIEHVA-NPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred HHHhcC-CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999 8999999999999999999999643
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.6e-14 Score=123.21 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=76.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---eeccccccCCCCC-CccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LYHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
....+|||+|||+|.++..|++++. +|+++|.+ +|++.+.++ |+.. .++.-.+.+.+++ ++||+|.|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~ 119 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFH 119 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEeh
Confidence 3457999999999999999999864 56888986 588887765 3321 2221122244455 899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.+++|+. +|..+|.|+.|+|||||++++..
T Consensus 120 ~vl~~~~-~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 120 AVLEWVA-DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred hHHHhhC-CHHHHHHHHHHHcCCCeEEEEEE
Confidence 9999988 89999999999999999998864
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-13 Score=117.36 Aligned_cols=98 Identities=20% Similarity=0.223 Sum_probs=75.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccc--ee-ccccccCCCCCCccCeeeeccccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFG--LY-HDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~--~~-~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
.....+|||+|||+|.++..|+++. ...+++++|.+ .|++.+.++ +.. .+ .|. +.+. .+++||+|+|+.+|+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~-~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSR-LPDCQFVEADI-ASWQ-PPQALDLIFANASLQ 104 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHh-CCCCeEEECch-hccC-CCCCccEEEEccChh
Confidence 3457899999999999999998762 11257889986 599988877 322 22 232 1121 238999999999999
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|.. |+..+|.++.|+|||||.+++..
T Consensus 105 ~~~-d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 105 WLP-DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hCC-CHHHHHHHHHHhcCCCcEEEEEC
Confidence 888 89999999999999999999974
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-13 Score=124.63 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=78.8
Q ss_pred hhHHHHHhhhhhccc-CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHH---HHc-Cc---cceecc
Q 027609 51 HWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPII---YER-GL---FGLYHD 121 (221)
Q Consensus 51 ~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a---~eR-Gl---~~~~~d 121 (221)
.|+.... |...+. +.....++|||+|||+|.++..++..+.. .++++|.+. |+..+ ... +. +....-
T Consensus 103 e~~s~~~--~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~ 178 (314)
T TIGR00452 103 EWRSDIK--WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL 178 (314)
T ss_pred HHHHHHH--HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC
Confidence 4655553 233333 44555789999999999999999888753 468888864 65432 111 11 111110
Q ss_pred ccccCCCCCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 122 WCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 122 ~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
-.+.++ ++.+||+|.|..++.|+. +|..+|.|+.|+|||||.+++.+
T Consensus 179 ~ie~lp-~~~~FD~V~s~gvL~H~~-dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 179 GIEQLH-ELYAFDTVFSMGVLYHRK-SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CHHHCC-CCCCcCEEEEcchhhccC-CHHHHHHHHHHhcCCCCEEEEEE
Confidence 012232 337899999999999998 89999999999999999999863
|
Known examples to date are restricted to the proteobacteria. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-13 Score=118.80 Aligned_cols=110 Identities=16% Similarity=0.287 Sum_probs=80.6
Q ss_pred hhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCC
Q 027609 50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNT 128 (221)
Q Consensus 50 ~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~ 128 (221)
..|++.+.......+ . ...+|||+|||+|.++..|+++. ..+++++|.+ +|++.+.++.- -...| ++.+ |
T Consensus 35 ~~wr~~~~~~l~~~~--~--~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~-~~~~d-~~~l-p 105 (226)
T PRK05785 35 VRWRAELVKTILKYC--G--RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADD-KVVGS-FEAL-P 105 (226)
T ss_pred HHHHHHHHHHHHHhc--C--CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccc-eEEec-hhhC-C
Confidence 567765543122211 1 25689999999999999998873 1268999987 69999988742 12333 4545 5
Q ss_pred CC-CccCeeeeccccccccccHHHHHHHhhhhccCCe-EEEEE
Q 027609 129 YP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDG-NLILR 169 (221)
Q Consensus 129 yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG-~~ii~ 169 (221)
|+ ++||+|.|+.+++|+. |++.+|.||.|||||.+ .+.++
T Consensus 106 ~~d~sfD~v~~~~~l~~~~-d~~~~l~e~~RvLkp~~~ile~~ 147 (226)
T PRK05785 106 FRDKSFDVVMSSFALHASD-NIEKVIAEFTRVSRKQVGFIAMG 147 (226)
T ss_pred CCCCCEEEEEecChhhccC-CHHHHHHHHHHHhcCceEEEEeC
Confidence 76 9999999999999888 89999999999999954 33344
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-13 Score=123.04 Aligned_cols=100 Identities=18% Similarity=0.113 Sum_probs=73.1
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHH--HHHcCc-----cceeccccccCCCCCCccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPI--IYERGL-----FGLYHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~--a~eRGl-----~~~~~d~~e~f~~yp~sFDlVh 137 (221)
+.....++|||+|||+|.++..|+..+.. .|+++|.+. ++.. +..+.. +..+..-.+.++ ++++||+|+
T Consensus 118 l~~l~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-~~~~FD~V~ 194 (322)
T PRK15068 118 LSPLKGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-ALKAFDTVF 194 (322)
T ss_pred hCCCCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC-CcCCcCEEE
Confidence 33445689999999999999999988643 368888763 5432 111211 112221123343 379999999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
|..+++|.. |+..+|.++.|+|||||.+++.
T Consensus 195 s~~vl~H~~-dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 195 SMGVLYHRR-SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ECChhhccC-CHHHHHHHHHHhcCCCcEEEEE
Confidence 999999988 8999999999999999999987
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-12 Score=108.87 Aligned_cols=147 Identities=19% Similarity=0.292 Sum_probs=100.7
Q ss_pred hhhHHHHHhhhhhccc-CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccc--eecc
Q 027609 50 QHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFG--LYHD 121 (221)
Q Consensus 50 ~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~--~~~d 121 (221)
..|+++.-. -..... +.. ..+|||+|||+|.++..++.+.- ...|+++|.+ ++++.+.+ .|+.. .++.
T Consensus 27 ~~~~~~~~d-~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~ 102 (187)
T PRK00107 27 ELWERHILD-SLAIAPYLPG--GERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG 102 (187)
T ss_pred HHHHHHHHH-HHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec
Confidence 378777733 111112 333 67899999999999998875321 1257888886 57765554 34422 2332
Q ss_pred ccccCCCCCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEee--c----C
Q 027609 122 WCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY--T----N 195 (221)
Q Consensus 122 ~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~--~----~ 195 (221)
-++.+.. +++||+|.|+. .. ++..++.++.|+|||||.+++-+......++.++++.+.|.+.... + +
T Consensus 103 d~~~~~~-~~~fDlV~~~~----~~-~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (187)
T PRK00107 103 RAEEFGQ-EEKFDVVTSRA----VA-SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLD 176 (187)
T ss_pred cHhhCCC-CCCccEEEEcc----cc-CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCC
Confidence 2333432 57999999974 23 6789999999999999999999998899999999999999975432 1 2
Q ss_pred CCeeEEEEEec
Q 027609 196 DNQGMLCVHKT 206 (221)
Q Consensus 196 ~~e~~l~~~K~ 206 (221)
+...+.|.+|+
T Consensus 177 ~~~~~~~~~~~ 187 (187)
T PRK00107 177 GERHLVIIRKK 187 (187)
T ss_pred CcEEEEEEecC
Confidence 24455566663
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-13 Score=120.21 Aligned_cols=100 Identities=17% Similarity=0.257 Sum_probs=76.7
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc----ccee-ccccccCCCCC-CccCeeeecc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL----FGLY-HDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl----~~~~-~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
.....+|||+|||+|.++..|+... ..+++++|.+ ++++.+.++.. +... .|. .. .+|| ++||+|+|..
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~-~~-~~~~~~~FD~V~s~~ 125 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI-LK-KDFPENTFDMIYSRD 125 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc-cc-CCCCCCCeEEEEEhh
Confidence 3447789999999999999887642 1257888886 58888888632 1111 232 11 2477 8999999998
Q ss_pred ccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 141 LFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 141 v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++.|+.. ++..+|.|+.|+|||||++++.|.
T Consensus 126 ~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 126 AILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8988864 899999999999999999999974
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-13 Score=102.06 Aligned_cols=97 Identities=23% Similarity=0.330 Sum_probs=71.9
Q ss_pred CCeEEeecCcchHHHHHHhh--CCCeEEEeccCCCC-CCHHHHHHcC----ccc---ee-ccccccCCCCCCccCeeeec
Q 027609 71 VRNVMDMRAVYGGFAAALKD--LKVWVMNVVPIESP-DTLPIIYERG----LFG---LY-HDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~--~~v~vmnv~~~d~~-~~l~~a~eRG----l~~---~~-~d~~e~f~~yp~sFDlVh~~ 139 (221)
..+|||+|||+|.++.+|++ .+.. ++++|.+ ++++.+.++- ... .+ .|+ .....++..||+|.|.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 57899999999999999999 5543 6888886 5888887773 211 22 343 1123345789999999
Q ss_pred c-cccccc--ccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 140 H-LFSTIK--KSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 140 ~-v~~h~~--~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
. +++++. ++...+|.++.+.|||||+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 8 444443 2678999999999999999999874
|
... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-13 Score=127.28 Aligned_cols=97 Identities=21% Similarity=0.331 Sum_probs=77.1
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC--cc---ce-eccccccCCCCC-CccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG--LF---GL-YHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG--l~---~~-~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
....+|||+|||+|.++..|+++.- .+++++|.+ ++++.+.++. +. .. ..|+.+ .++| ++||+|+|..
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~I~s~~ 340 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTK--KTYPDNSFDVIYSRD 340 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCccc--CCCCCCCEEEEEECC
Confidence 3567999999999999999987631 257899987 5888887652 21 11 234332 3466 8999999999
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++.|+. |+..+|.|+.|+|||||.+++.|
T Consensus 341 ~l~h~~-d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 341 TILHIQ-DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cccccC-CHHHHHHHHHHHcCCCeEEEEEE
Confidence 999999 89999999999999999999986
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-13 Score=115.59 Aligned_cols=92 Identities=22% Similarity=0.306 Sum_probs=79.4
Q ss_pred CCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeeccccccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKK 147 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~ 147 (221)
..+|||+|||.|.+.++|.+. ++. ..+++.+ +.+..+.+||+.=+.+|+-+.+..|| ++||.|.+++.+++..
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~---g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~- 89 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVD---GYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR- 89 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCe---EEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh-
Confidence 689999999999999999884 554 4677765 47888999999767778888888899 9999999999999999
Q ss_pred cHHHHHHHhhhhccCCeEEEEE
Q 027609 148 SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+|..+|.||-|| |...|++
T Consensus 90 ~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEE
Confidence 899999999877 6678888
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-14 Score=105.02 Aligned_cols=90 Identities=23% Similarity=0.342 Sum_probs=54.2
Q ss_pred EeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCCC-CccCeeeeccccccc
Q 027609 75 MDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTYP-RTYDLLHADHLFSTI 145 (221)
Q Consensus 75 LD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~yp-~sFDlVh~~~v~~h~ 145 (221)
||+|||+|.++..|+++- ....++++|.+ .|++.+++| +... .. .+-.+.+...+ ++||+|.+..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998873 34467888886 588655555 1111 11 11111122233 699999999999999
Q ss_pred cccHHHHHHHhhhhccCCeEE
Q 027609 146 KKSLKAVVAEVDRILRPDGNL 166 (221)
Q Consensus 146 ~~d~~~vL~EmdRVLRPGG~~ 166 (221)
. ++..+|..+.++|||||.+
T Consensus 80 ~-~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E-DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--HHHHHHHHTTT-TSS-EE
T ss_pred h-hHHHHHHHHHHHcCCCCCC
Confidence 6 8999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-13 Score=113.53 Aligned_cols=100 Identities=15% Similarity=0.274 Sum_probs=74.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
...+|||+|||+|.++..|++.--...+++++|.+ ++++.+.++ ++.. .++.-++.+ +++ ++||+|++..+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVTIGFG 123 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEEEecc
Confidence 36799999999999999998751111257888886 588777655 2222 222112223 366 89999999999
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++|+. ++..+|.|+.|+|||||++++.+.
T Consensus 124 l~~~~-~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 124 LRNVP-DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cccCC-CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 98888 899999999999999999998864
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-13 Score=117.86 Aligned_cols=129 Identities=13% Similarity=0.173 Sum_probs=90.5
Q ss_pred cccchhhhhhhHHHHHhhhhhccc-CCCCCCCeEEeecCcchH----HHHHHhhCC----CeEEEeccCCCC-CCHHHHH
Q 027609 42 PEDFTADYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGG----FAAALKDLK----VWVMNVVPIESP-DTLPIIY 111 (221)
Q Consensus 42 ~~~f~~d~~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G~----faa~L~~~~----v~vmnv~~~d~~-~~l~~a~ 111 (221)
...|-.|...|..........+++ .......+|+|+|||+|. +|..|.+.. .+...|+++|.+ .|++.|.
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 445677778887776653333332 223345789999999995 566665542 134578999997 5999887
Q ss_pred HcC--------cc-------------------------c-eeccccccCCCCC-CccCeeeeccccccccc-cHHHHHHH
Q 027609 112 ERG--------LF-------------------------G-LYHDWCESFNTYP-RTYDLLHADHLFSTIKK-SLKAVVAE 155 (221)
Q Consensus 112 eRG--------l~-------------------------~-~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~-d~~~vL~E 155 (221)
+.- ++ . ..+|..+ +++| ++||+|.|..+|+|+.. +...++.+
T Consensus 150 ~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~ 227 (264)
T smart00138 150 AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNR 227 (264)
T ss_pred cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCCHHHHHHHHHH
Confidence 631 11 0 1345443 2345 99999999999999874 56689999
Q ss_pred hhhhccCCeEEEEEcCh
Q 027609 156 VDRILRPDGNLILRDDA 172 (221)
Q Consensus 156 mdRVLRPGG~~ii~d~~ 172 (221)
+.|+|+|||++++....
T Consensus 228 l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 228 FAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHhCCCeEEEEECcc
Confidence 99999999999998754
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.9e-13 Score=111.62 Aligned_cols=94 Identities=14% Similarity=0.234 Sum_probs=71.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccc---eeccccccCCCCCCccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFG---LYHDWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~---~~~d~~e~f~~yp~sFDlVh~~~v 141 (221)
...+|||+|||+|.++..|++++. +|+++|.+ .+++.+.+ +|+.+ ...|+.+ + +++.+||+|.|..+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~ 104 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVV 104 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecc
Confidence 357899999999999999999864 56888886 47765543 34422 2234322 2 34678999999999
Q ss_pred cccccc-cHHHHHHHhhhhccCCeEEEE
Q 027609 142 FSTIKK-SLKAVVAEVDRILRPDGNLIL 168 (221)
Q Consensus 142 ~~h~~~-d~~~vL~EmdRVLRPGG~~ii 168 (221)
++|+.. +...++.++.|+|||||++++
T Consensus 105 ~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 105 LMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 987664 678999999999999999654
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-13 Score=114.79 Aligned_cols=99 Identities=11% Similarity=0.138 Sum_probs=74.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCC-eEEEeccCCCC-CCHHHHHHc----Ccc---ceeccccccCCCCC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKV-WVMNVVPIESP-DTLPIIYER----GLF---GLYHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v-~vmnv~~~d~~-~~l~~a~eR----Gl~---~~~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
...+|||+|||+|.++..|+++-. ...+++++|.+ +|++.+.++ +.. ..++ ..+..++ ..||+|.|+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~d~v~~~ 129 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC---NDIRHVEIKNASMVILN 129 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE---CChhhCCCCCCCEEeee
Confidence 467899999999999998887511 12257899986 699888775 211 1222 1222344 679999999
Q ss_pred cccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 140 HLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 140 ~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.+++|++. ++..+|.|+.|+|||||.++++|.
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99998864 678999999999999999999975
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.8e-13 Score=113.05 Aligned_cols=115 Identities=24% Similarity=0.362 Sum_probs=84.3
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCCCCccCeeeecccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
++|||+|||+|+++..++++.-. .+++++|.+ ++++.+.++ |+.+ .+ .|..+ . +++++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHHHH
Confidence 47999999999999999876311 256777776 477766654 4422 22 23222 1 456899999999999
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcChh----------------hHHHHHHHHHhcCCeEE
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~----------------~~~~i~~i~~~l~W~~~ 190 (221)
+|.. ++..+|.++.|+|||||++++.+... ...++.+++..-.+++.
T Consensus 78 ~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 78 HHIK-DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred HhCC-CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 9998 89999999999999999999986421 14556677777777764
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.3e-13 Score=117.31 Aligned_cols=98 Identities=15% Similarity=0.250 Sum_probs=79.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceec-cc----cccCCCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYH-DW----CESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~-d~----~e~f~~yp-~sFDlVh~~~v~ 142 (221)
...+|||+|||-|.++..|+..|. +|+++|.+ +++++|..+.+.+-+. ++ .|.+. .. .+||+|.|-.++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVl 134 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHH
Confidence 577899999999999999999995 57999997 5999998775533221 11 11111 24 799999999999
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+|++ ||+.++.+..+.+||||.+++|+.+
T Consensus 135 EHv~-dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 135 EHVP-DPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HccC-CHHHHHHHHHHHcCCCcEEEEeccc
Confidence 9999 9999999999999999999999764
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-13 Score=111.16 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=75.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcc--c-eeccccccCCCCC-CccCeeeecccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLF--G-LYHDWCESFNTYP-RTYDLLHADHLFST 144 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~--~-~~~d~~e~f~~yp-~sFDlVh~~~v~~h 144 (221)
...+|||+|||+|.++..|++.+.. ..++.+|.+ .+++.+.++.-. . ...|. +.++ ++ ++||+|.|+.+++|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLP-LEDSSFDLIVSNLALQW 110 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCC-CCCCceeEEEEhhhhhh
Confidence 3478999999999999999887532 246888875 588777776321 1 23343 2233 45 99999999999998
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.. ++..+|.++.|+|||||++++.+.
T Consensus 111 ~~-~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 111 CD-DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred cc-CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 87 899999999999999999999853
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-12 Score=104.96 Aligned_cols=100 Identities=17% Similarity=0.348 Sum_probs=76.5
Q ss_pred CCCeEEeecCcchHHHHHHhh-CCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCC-CCCccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKD-LKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNT-YPRTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~-~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~-yp~sFDlVh~~ 139 (221)
+..+|||+|||+|.++..|++ .+- ..+++++|.+ ++++.+.++ |+.. .+ .|.-+ ++. |++.||+|.+.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 367899999999999999994 321 1247899986 588877773 5532 22 34333 321 45899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.+++|.. ++..+|.++.|+|+|||.+++.+..
T Consensus 81 ~~l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFP-DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTS-HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhcc-CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9998888 8999999999999999999999877
|
... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-12 Score=109.27 Aligned_cols=101 Identities=25% Similarity=0.372 Sum_probs=76.6
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc--Cc---ccee-ccccccCCCCC-CccCeeeec
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER--GL---FGLY-HDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR--Gl---~~~~-~d~~e~f~~yp-~sFDlVh~~ 139 (221)
.....+|||+|||+|.++..++++-...-+++++|.+ ++++.+.++ +. +... .|. +.+ +++ .+||+|++.
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~-~~~-~~~~~~~D~v~~~ 94 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA-DGL-PFPDGSFDAVRSD 94 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc-ccC-CCCCCCceEEEEe
Confidence 3447799999999999999998762111257888886 588888776 11 1111 232 112 355 899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.+++|+. ++..++.++.|+|||||++++.+.
T Consensus 95 ~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 95 RVLQHLE-DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred chhhccC-CHHHHHHHHHHHhcCCcEEEEEec
Confidence 9999999 899999999999999999998763
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=110.36 Aligned_cols=115 Identities=13% Similarity=0.200 Sum_probs=80.6
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCcc--ceeccccccCCCCCCccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLF--GLYHDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~--~~~~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
..+|||+|||+|.++..|++++. .|+++|.+ .+++.+.+ .|+. ....|.. . .+++.+||+|.|+.+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~-~~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-A-AALNEDYDFIFSTVVFM 105 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-h-ccccCCCCEEEEecccc
Confidence 46899999999999999999863 57888886 47776543 3442 1122321 1 23457899999999998
Q ss_pred cccc-cHHHHHHHhhhhccCCeEEEEEcC-----------hh---hHHHHHHHHHhcCCeEEEe
Q 027609 144 TIKK-SLKAVVAEVDRILRPDGNLILRDD-----------AE---TIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 144 h~~~-d~~~vL~EmdRVLRPGG~~ii~d~-----------~~---~~~~i~~i~~~l~W~~~~~ 192 (221)
|+.. +...++.++.|+|||||++++-+. .+ ..+++.+.+.. |+....
T Consensus 106 ~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~ 167 (195)
T TIGR00477 106 FLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKY 167 (195)
T ss_pred cCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEe
Confidence 8763 678999999999999999655421 11 14566666654 776544
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.8e-13 Score=114.81 Aligned_cols=100 Identities=10% Similarity=0.144 Sum_probs=73.6
Q ss_pred CCCeEEeecCcchHHHHHHhhC---CCeEEEeccCCCC-CCHHHHHHc----CccceeccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESP-DTLPIIYER----GLFGLYHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~---~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|+.. +- ..++++|.+ +|++.+.++ |+...+.=.+..+..+| ..||+|.|+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence 4578999999999999888762 22 257899986 699988776 22211100011233344 6699999999
Q ss_pred ccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 141 LFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 141 v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+++|+.. +...++.|+.|+|||||.+++.|.
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9998864 567899999999999999999973
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-12 Score=114.06 Aligned_cols=120 Identities=16% Similarity=0.208 Sum_probs=89.3
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeE------EEeccCCCC-CCHHHHHHcC----ccc------eeccccccCCC
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWV------MNVVPIESP-DTLPIIYERG----LFG------LYHDWCESFNT 128 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~v------mnv~~~d~~-~~l~~a~eRG----l~~------~~~d~~e~f~~ 128 (221)
+.+....++|||+||+|-+|-.+.++ +.. -+|+-.|.+ +||.++.+|. +-. +..| +|.+|
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d-AE~Lp- 172 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD-AEDLP- 172 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC-cccCC-
Confidence 45677899999999999999888776 211 356777774 6998877774 321 1223 67676
Q ss_pred CC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhhH-HHHHHHHHhcCCeE
Q 027609 129 YP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETI-VEVEDLVKSLHWDV 189 (221)
Q Consensus 129 yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~-~~i~~i~~~l~W~~ 189 (221)
|| ++||+...+.-+..++ +++.+|.|++|||||||.|.+-+-...- +-++.++..--.++
T Consensus 173 Fdd~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred CCCCcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 98 9999999998888888 8999999999999999999988755443 45555554443333
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-12 Score=114.52 Aligned_cols=105 Identities=21% Similarity=0.374 Sum_probs=70.4
Q ss_pred hhhcccCCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHH----HHHHcCccceeccccccCCCCCCcc
Q 027609 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLP----IIYERGLFGLYHDWCESFNTYPRTY 133 (221)
Q Consensus 60 Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~----~a~eRGl~~~~~d~~e~f~~yp~sF 133 (221)
+.+.++|++ ..+|||+|||.|+++..++++ |+. |+++..+ ++.+ .+.++|+.+.+.=.+..+..++.+|
T Consensus 54 ~~~~~~l~~--G~~vLDiGcGwG~~~~~~a~~~g~~---v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 54 LCEKLGLKP--GDRVLDIGCGWGGLAIYAAERYGCH---VTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHTTTT--T--T-EEEEES-TTSHHHHHHHHHH--E---EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHhCCCC--CCEEEEeCCCccHHHHHHHHHcCcE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 344455655 789999999999999999998 765 4666665 3555 4456677543221122233456799
Q ss_pred Ceeeeccccccccc-cHHHHHHHhhhhccCCeEEEEE
Q 027609 134 DLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 134 DlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
|-|.+-.+|.|... +...++.+++|+|||||.+++.
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999999953 8899999999999999999977
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-12 Score=110.84 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=73.0
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
...+|||+|||+|..+..++.. +.. .+++++|.+ ++++.+.++ |+.. . ..|. +.+ +++ ++||+|+++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l-~~~~~~fD~Vi~~ 153 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EAL-PVADNSVDVIISN 153 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhC-CCCCCceeEEEEc
Confidence 4679999999999876655543 221 257888886 588888765 3322 1 1332 223 466 899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.+++|.+ +...++.|+.|+|||||.+++.+.
T Consensus 154 ~v~~~~~-d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 154 CVINLSP-DKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CcccCCC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9998887 889999999999999999999753
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=113.39 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=87.6
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCc---ccee-ccccccCCCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGL---FGLY-HDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl---~~~~-~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
...+|||+|||+|.++..++++ +. .+++.+|.+ +|++.+.++.- +..+ .|. +.+ +|+ ++||+|.++.++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~-e~l-p~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDA-EDL-PFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccH-HhC-CCCCCceeEEEEcChh
Confidence 3568999999999999888764 22 257888886 58888887631 1222 232 223 466 899999999999
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcCh-----------------hhHHHHHHHHHhcCCeEEE
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDDA-----------------ETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-----------------~~~~~i~~i~~~l~W~~~~ 191 (221)
+|+. ++..+|.|+.|+|||||.+++.+.. +..+++.+++++..++...
T Consensus 189 ~~~~-d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 189 EYWP-DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred hhCC-CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEE
Confidence 9988 8999999999999999999886421 1246677888888887643
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-11 Score=99.34 Aligned_cols=118 Identities=13% Similarity=0.189 Sum_probs=87.0
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-ccee-ccccccCCCCCCccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FGLY-HDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~~~-~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
..+|||+|||+|.++..++.++. .++++|.+ ++++.+.++ ++ +.++ .|+.+ ..+++||+|.|+..++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYL 93 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCC
Confidence 46799999999999999998864 57888875 577766654 22 1112 24322 2247999999997776
Q ss_pred cccc--------------------cHHHHHHHhhhhccCCeEEEEEcChhh-HHHHHHHHHhcCCeEEEeec
Q 027609 144 TIKK--------------------SLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVRMIYT 194 (221)
Q Consensus 144 h~~~--------------------d~~~vL~EmdRVLRPGG~~ii~d~~~~-~~~i~~i~~~l~W~~~~~~~ 194 (221)
+... -...+|.++.|+|||||.+++.+.... ..++.+.++...++......
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEE
Confidence 5542 035789999999999999999876655 77888888888898876543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=106.19 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=80.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCC-------CCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN-------TYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~-------~yp-~sFDlVh~~~v 141 (221)
+..+|||+|||+|.++..|+++....-.|+++|.+.|... .++.-...|..+ .. +++ .+||+|.|+.+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~---~~v~~i~~D~~~-~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI---VGVDFLQGDFRD-ELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC---CCcEEEecCCCC-hHHHHHHHHHhCCCCCCEEecCCC
Confidence 3568999999999999999887322225677777654321 122212234322 11 254 89999999865
Q ss_pred cccccc---c-------HHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhc--CCeEEEe--e----cCCCeeEEEE
Q 027609 142 FSTIKK---S-------LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSL--HWDVRMI--Y----TNDNQGMLCV 203 (221)
Q Consensus 142 ~~h~~~---d-------~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l--~W~~~~~--~----~~~~e~~l~~ 203 (221)
...... | .+.+|.|+.|+|||||.|++..-.. +.+++++..+ +|+..-. + ..+.|.+++|
T Consensus 127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~ 204 (209)
T PRK11188 127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVA 204 (209)
T ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceEEEEECCccccccCceeEEEe
Confidence 443221 1 1579999999999999999964331 2333333333 4544322 2 2358999999
Q ss_pred Ee
Q 027609 204 HK 205 (221)
Q Consensus 204 ~K 205 (221)
+.
T Consensus 205 ~~ 206 (209)
T PRK11188 205 TG 206 (209)
T ss_pred ec
Confidence 74
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=115.09 Aligned_cols=98 Identities=21% Similarity=0.342 Sum_probs=74.6
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccce-eccccccCCCCCCccCeeeeccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGL-YHDWCESFNTYPRTYDLLHADHLFSTI 145 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~-~~d~~e~f~~yp~sFDlVh~~~v~~h~ 145 (221)
....+|||+|||+|+++..++++ ++ +|+++|.+ ++++.+.++.- +. +.-.+..+...+++||+|.|..+|+|.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~-~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCA-GLPVEIRLQDYRDLNGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhc-cCeEEEEECchhhcCCCCCEEEEeCchhhC
Confidence 34679999999999999999875 44 57888886 59998888731 10 110011122236899999999999998
Q ss_pred cc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 146 KK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 146 ~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.. ++..++.++.|+|||||++++.+
T Consensus 242 g~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 242 GPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred ChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 53 77899999999999999999974
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=103.15 Aligned_cols=126 Identities=17% Similarity=0.266 Sum_probs=83.7
Q ss_pred hhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHH----HcCccc--eec-c
Q 027609 50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIY----ERGLFG--LYH-D 121 (221)
Q Consensus 50 ~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~----eRGl~~--~~~-d 121 (221)
..|+++.... ...+. .....+|||+|||+|.++..|+...- ..+|+++|.+ +|++.+. +.|+.+ ++. |
T Consensus 25 ~~~~~~~~d~-i~~~~--~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d 100 (181)
T TIGR00138 25 EIWERHILDS-LKLLE--YLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGR 100 (181)
T ss_pred HHHHHHHHHH-HHHHH--hcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecc
Confidence 4677766441 11111 22367999999999998888765431 1257888886 4665443 345532 222 3
Q ss_pred ccccCCCCCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcC
Q 027609 122 WCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLH 186 (221)
Q Consensus 122 ~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~ 186 (221)
. +.++ .+++||+|.|.. + . +...++.++.|+|||||.+++........++..+.+++|
T Consensus 101 ~-~~~~-~~~~fD~I~s~~-~---~-~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~ 158 (181)
T TIGR00138 101 A-EDFQ-HEEQFDVITSRA-L---A-SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQ 158 (181)
T ss_pred h-hhcc-ccCCccEEEehh-h---h-CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhh
Confidence 2 2232 348999999875 3 3 566788999999999999999988777788877766643
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.9e-11 Score=97.83 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=81.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCCCCCccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
...+|||+|||+|.++..++.+.- ..+++.+|.+ ++++.+.++ ++.. ++.. ....+++.+||+|.++...
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~--d~~~~~~~~~D~v~~~~~~ 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG--EAPIELPGKADAIFIGGSG 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec--CchhhcCcCCCEEEECCCc
Confidence 467899999999999999887632 1257888885 577776543 3322 1211 1122356889999998655
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEc-ChhhHHHHHHHHHhcCCeE
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d-~~~~~~~i~~i~~~l~W~~ 189 (221)
. +...++.++.|+|+|||++++.. ..+..+++.+++++..+..
T Consensus 108 ~----~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 G----NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred c----CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 4 34578999999999999999976 3455778888888888864
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-11 Score=110.28 Aligned_cols=115 Identities=14% Similarity=0.230 Sum_probs=81.8
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHH----HcCcc-c-eeccccccCCCCCCccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIY----ERGLF-G-LYHDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~----eRGl~-~-~~~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
..+|||+|||+|.++..|++++. +|+++|.+ .+++.+. +.|+. . ...|..+ . .++++||+|.|..+|+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~-~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-A-SIQEEYDFILSTVVLM 195 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-c-cccCCccEEEEcchhh
Confidence 35899999999999999999874 56888886 4776554 34541 1 1223211 1 2368999999999998
Q ss_pred cccc-cHHHHHHHhhhhccCCeEEEEEc---Ch--------h---hHHHHHHHHHhcCCeEEEe
Q 027609 144 TIKK-SLKAVVAEVDRILRPDGNLILRD---DA--------E---TIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 144 h~~~-d~~~vL~EmdRVLRPGG~~ii~d---~~--------~---~~~~i~~i~~~l~W~~~~~ 192 (221)
|+.. +...++.+|.|+|||||++++-. .. . .-.++.+.+.. |++...
T Consensus 196 ~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 196 FLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 8764 67899999999999999966531 10 1 14667777766 887654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-11 Score=116.66 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=74.7
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc-Cc-cc---eeccccccCCCCC-CccCeeeeccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER-GL-FG---LYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR-Gl-~~---~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
....+|||+|||+|.++..|+++.. .++++|.+ .+++.+.++ +. .. ...|......++| ++||+|.|+.+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~ 112 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWL 112 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhh
Confidence 3466899999999999999998753 56888886 588766543 11 11 2234321123467 89999999999
Q ss_pred cccccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 142 FSTIKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 142 ~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++|+.+ +...+|.|+.|+|||||++++.|
T Consensus 113 l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 113 LMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 999884 36799999999999999999986
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-11 Score=103.67 Aligned_cols=90 Identities=21% Similarity=0.284 Sum_probs=69.7
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeecccccccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKS 148 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d 148 (221)
..+|||+|||+|.++..|++.... +++++|.+ ++++.+.++++.-...|..+.+++++ ++||+|.|+.+|+|.. |
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~-d 90 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR-N 90 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc-C
Confidence 458999999999999999765321 35778876 58888888876434445433344566 8999999999999998 8
Q ss_pred HHHHHHHhhhhccCC
Q 027609 149 LKAVVAEVDRILRPD 163 (221)
Q Consensus 149 ~~~vL~EmdRVLRPG 163 (221)
+..+|.||.|+++++
T Consensus 91 ~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 91 PEEILDEMLRVGRHA 105 (194)
T ss_pred HHHHHHHHHHhCCeE
Confidence 999999999988764
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=7e-11 Score=103.45 Aligned_cols=129 Identities=19% Similarity=0.168 Sum_probs=88.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCCCccCeeeecccccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKS 148 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~d 148 (221)
...+|||+|||+|.++.++++.+.. .++++|.+ .+++.+.++.-..-+.+..+ +..-..+||+|.|+.... .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~-~~~~~~~fD~Vvani~~~----~ 191 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVY-LPQGDLKADVIVANILAN----P 191 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEE-EccCCCCcCEEEEcCcHH----H
Confidence 4678999999999999988887653 47888886 48887776621111111000 110012799999974322 3
Q ss_pred HHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 149 LKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
...++.++.|+|||||++++++... ..+.+.+.++...++.......+.=..++++|
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~ 249 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKK 249 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEe
Confidence 4578899999999999999997543 46677788888889876554444555556665
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-11 Score=103.61 Aligned_cols=101 Identities=12% Similarity=0.184 Sum_probs=72.3
Q ss_pred CCCCCCeEEeecCcchHHHHHHhh----CCCeEEEeccCCCC-CCHHHHHHcCc-cc--e-eccccccCCCCCCccCeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKD----LKVWVMNVVPIESP-DTLPIIYERGL-FG--L-YHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~----~~v~vmnv~~~d~~-~~l~~a~eRGl-~~--~-~~d~~e~f~~yp~sFDlVh 137 (221)
...+..+|||+|||+|.++..|++ .+. ..+++++|.+ +|++.+.++.. .+ . ..+ ++.++.-+++||+|.
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~-~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAV-SDELVAEGERFDVVT 134 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEe-cccccccCCCccEEE
Confidence 334567999999999999888864 232 2368999986 69999988732 11 1 122 233432238999999
Q ss_pred eccccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 138 ADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 138 ~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
|+.+|+|+.+ +...+|.||.|++| |.+++.|-
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 9999999983 24579999999999 56666653
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-12 Score=96.17 Aligned_cols=89 Identities=20% Similarity=0.332 Sum_probs=63.6
Q ss_pred EEeecCcchHHHHHHhhCC--CeEEEeccCCCC-CCHHHHHHcCc-----cce-eccccccCCCCC-CccCeeeeccc-c
Q 027609 74 VMDMRAVYGGFAAALKDLK--VWVMNVVPIESP-DTLPIIYERGL-----FGL-YHDWCESFNTYP-RTYDLLHADHL-F 142 (221)
Q Consensus 74 VLD~GcG~G~faa~L~~~~--v~vmnv~~~d~~-~~l~~a~eRGl-----~~~-~~d~~e~f~~yp-~sFDlVh~~~v-~ 142 (221)
|||+|||+|..+..|++.- ..-..+.++|.+ +|++.+.++.- +.. ..|. +.++ ++ ++||+|.|..+ +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~-~~l~-~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA-RDLP-FSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT-TCHH-HHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH-hHCc-ccCCCeeEEEEcCCcc
Confidence 7999999999999998762 111367999987 59999988852 112 2342 2233 34 89999999544 8
Q ss_pred ccccc-cHHHHHHHhhhhccCCe
Q 027609 143 STIKK-SLKAVVAEVDRILRPDG 164 (221)
Q Consensus 143 ~h~~~-d~~~vL~EmdRVLRPGG 164 (221)
+|+.+ +...+|.++.|+|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 88775 78899999999999998
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.4e-11 Score=106.02 Aligned_cols=113 Identities=20% Similarity=0.163 Sum_probs=79.9
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----ccceeccccccCCCCC-CccCeeeecccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LFGLYHDWCESFNTYP-RTYDLLHADHLFST 144 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h 144 (221)
..+|||+|||+|.++.+++..+.. +++++|.+ .+++.+.++. +...+.........++ +.||+|+|+.+..
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE- 236 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH-
Confidence 478999999999999888887653 57888886 5888777652 2211222112123344 8999999985443
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEE
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~ 190 (221)
....++.++.|+|||||+++++.... ..+.+.+.+++. |+..
T Consensus 237 ---~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 237 ---VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred ---HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Ccee
Confidence 34578999999999999999997532 356666666665 7764
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.4e-11 Score=100.58 Aligned_cols=99 Identities=15% Similarity=0.251 Sum_probs=75.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc----cce-eccccccCCCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL----FGL-YHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl----~~~-~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
...+|||+|||+|.++..++++.....+++.+|.+ .+++.+.++.- +.. ..|..+ ++ ++ ++||+|+++.++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LP-FEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CC-CCCCcEEEEEEeeee
Confidence 57899999999999999998774321357888875 57777777632 112 233322 22 55 899999999999
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+|.. ++..++.++.++|||||++++.+.
T Consensus 117 ~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 117 RNVT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCcc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8888 899999999999999999998753
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-11 Score=103.91 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=73.5
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCc-ccee-ccccccCCCCC-CccCeeeecccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGL-FGLY-HDWCESFNTYP-RTYDLLHADHLFST 144 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl-~~~~-~d~~e~f~~yp-~sFDlVh~~~v~~h 144 (221)
...+|||+|||+|.++..|.+. +. .+++++|.+ ++++.|.++.- +... .|. +.+++ ++||+|.|..+++|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~---~~~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSL---FDPFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeec---cCCCCCCCEEEEEECChhhh
Confidence 3678999999999999999876 22 267999987 59999988621 1222 342 23566 99999999999999
Q ss_pred ccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 145 IKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 145 ~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+.. +...++.||.|++ ++++++.+-
T Consensus 118 l~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 118 INPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred CCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 864 6789999999998 578888763
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=100.75 Aligned_cols=149 Identities=17% Similarity=0.331 Sum_probs=95.0
Q ss_pred hhhHHHHHhhhhhcc--cCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceec-ccc-c
Q 027609 50 QHWKNVVSKSYLNGM--GINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYH-DWC-E 124 (221)
Q Consensus 50 ~~W~~~v~~~Y~~~L--~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~-d~~-e 124 (221)
..|.++.+ |...| .+....++++||+|||.|.|++.|+.+- -.++.+|.+ ..++.+.+| +-+.-| .|. .
T Consensus 23 ~~~YE~~K--~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~R-l~~~~~V~~~~~ 96 (201)
T PF05401_consen 23 TSWYERRK--YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARER-LAGLPHVEWIQA 96 (201)
T ss_dssp T-HHHHHH--HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHH-TTT-SSEEEEES
T ss_pred CCHHHHHH--HHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHh-cCCCCCeEEEEC
Confidence 45666553 44444 3788899999999999999999999883 357888876 489999988 322111 111 1
Q ss_pred cCCC-CC-CccCeeeeccccccccc--cHHHHHHHhhhhccCCeEEEEEcChhh----------HHHHHHHHHhcCCeEE
Q 027609 125 SFNT-YP-RTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAET----------IVEVEDLVKSLHWDVR 190 (221)
Q Consensus 125 ~f~~-yp-~sFDlVh~~~v~~h~~~--d~~~vL~EmdRVLRPGG~~ii~d~~~~----------~~~i~~i~~~l~W~~~ 190 (221)
.++. +| ++|||||++-++..+.+ +...++..+...|+|||.+|+....+. .+.|.+++...-=++.
T Consensus 97 dvp~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~ 176 (201)
T PF05401_consen 97 DVPEFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVE 176 (201)
T ss_dssp -TTT---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEE
T ss_pred cCCCCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhhee
Confidence 2333 46 99999999999988763 577899999999999999999965432 3455566555544443
Q ss_pred Ee---ecCCCeeEEEEE
Q 027609 191 MI---YTNDNQGMLCVH 204 (221)
Q Consensus 191 ~~---~~~~~e~~l~~~ 204 (221)
-. .....|.-|+++
T Consensus 177 ~~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 177 RVECRGGSPNEDCLLAR 193 (201)
T ss_dssp EEEEE-SSTTSEEEEEE
T ss_pred EEEEcCCCCCCceEeee
Confidence 22 123355566554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.7e-11 Score=97.82 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=78.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccC------CCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF------NTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f------~~yp-~sFDlVh~~~v~ 142 (221)
...+|||+|||+|+++..++++......++.+|.+.+.. ..++.-...|..+.. ..++ ++||+|.|+.+.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~ 108 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKP---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAP 108 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccccc---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCC
Confidence 467899999999999998877632112467777754331 122221223432210 0145 789999986432
Q ss_pred --------ccccc--cHHHHHHHhhhhccCCeEEEEEc-ChhhHHHHHHHHHhcCCeEEEe-e----cCCCeeEEEEEe
Q 027609 143 --------STIKK--SLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVKSLHWDVRMI-Y----TNDNQGMLCVHK 205 (221)
Q Consensus 143 --------~h~~~--d~~~vL~EmdRVLRPGG~~ii~d-~~~~~~~i~~i~~~l~W~~~~~-~----~~~~e~~l~~~K 205 (221)
.|... +...+|.++.|+|||||.+++.. .....+++-..++..-|.+.+. + ..+.|++++|..
T Consensus 109 ~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T TIGR00438 109 NISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKR 187 (188)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEec
Confidence 22211 34789999999999999999953 2222333333322223444433 2 235799999963
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-11 Score=106.69 Aligned_cols=103 Identities=15% Similarity=0.263 Sum_probs=72.7
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHH----cCccceecccccc-C-CCCCCccCeeeecc
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYE----RGLFGLYHDWCES-F-NTYPRTYDLLHADH 140 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~e----RGl~~~~~d~~e~-f-~~yp~sFDlVh~~~ 140 (221)
.....++|||+|||+|.++..++++.- ..+++.+|.+.+++.+.+ .|+.+.+.-.+.. | .++| .+|+|.++.
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~ 223 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCR 223 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEh
Confidence 345678999999999999999988731 125677777667766544 3553322111112 2 1344 479999999
Q ss_pred ccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 141 LFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 141 v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+++++.+ ....+|.++.|+|||||.+++.|.
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9998874 346799999999999999999864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-11 Score=119.40 Aligned_cols=100 Identities=13% Similarity=0.257 Sum_probs=75.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c-ccee-ccccccCCC-CC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L-FGLY-HDWCESFNT-YP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l-~~~~-~d~~e~f~~-yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|+.+. ...+++++|.+ .|++.+.++. . ...+ .| +..++. |+ ++||+|.++.
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gD-a~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGD-AINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcc-hHhCccccCCCCEEEEEEch
Confidence 46799999999999998887752 22367999987 5898887762 1 1112 33 233432 55 9999999998
Q ss_pred cccccc------------ccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 141 LFSTIK------------KSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 141 v~~h~~------------~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+++|+. .++..+|.|+.|+|||||.+++.|.
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 888752 2678999999999999999999974
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-11 Score=108.54 Aligned_cols=98 Identities=15% Similarity=0.239 Sum_probs=77.9
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-----cc----eeccccccCCCCCCccCeeeecc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-----FG----LYHDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-----~~----~~~d~~e~f~~yp~sFDlVh~~~ 140 (221)
.++|||+|||.|-++..|+..|. +|+++|.+ +|+++|.+.-- .+ .+---|.........||.|.|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 58899999999999999999985 56999997 59999988731 11 01011222222345699999999
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+++|+. ||+.++.-+-+.|||||.++|++-.
T Consensus 167 vleHV~-dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 167 VLEHVK-DPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHh-CHHHHHHHHHHHhCCCCceEeeehh
Confidence 999999 9999999999999999999999753
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-11 Score=100.89 Aligned_cols=119 Identities=15% Similarity=0.110 Sum_probs=84.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCC-CC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNT-YP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~-yp-~sFDlVh~~ 139 (221)
...+|||+|||+|.++..|+++.-. .+++++|.+ ++++.+.++ ++.+ .+ .|..+.++. ++ ++||+|.+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5789999999999999999876211 267888886 488777653 3322 22 343133432 65 899999987
Q ss_pred cccccccc--------cHHHHHHHhhhhccCCeEEEEEc-ChhhHHHHHHHHHhcCCeEE
Q 027609 140 HLFSTIKK--------SLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 140 ~v~~h~~~--------d~~~vL~EmdRVLRPGG~~ii~d-~~~~~~~i~~i~~~l~W~~~ 190 (221)
.... |.. ....+|.++.|+|||||.|++.. .......+.+.+.+-.|.+.
T Consensus 119 ~~~p-~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPDP-WPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCC-CCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 5432 210 24689999999999999999975 45567777777777788776
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.7e-11 Score=105.46 Aligned_cols=94 Identities=14% Similarity=0.182 Sum_probs=67.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCC--CeEEEeccCCCC-CCHHHHHHcCc-cc-eeccccccCCCCC-CccCeeeeccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESP-DTLPIIYERGL-FG-LYHDWCESFNTYP-RTYDLLHADHLFS 143 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~--v~vmnv~~~d~~-~~l~~a~eRGl-~~-~~~d~~e~f~~yp-~sFDlVh~~~v~~ 143 (221)
...+|||+|||+|.++..|++.. ....+++++|.+ ++++.|.++.- +. ...|.. .+ ||+ ++||+|.+.. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~-~l-p~~~~sfD~I~~~~--~ 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSH-RL-PFADQSLDAIIRIY--A 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecc-cC-CCcCCceeEEEEec--C
Confidence 45789999999999999997752 111257999987 59998887732 11 233432 23 576 8999999753 2
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
+ ..+.|+.|+|||||++++....+
T Consensus 161 --~----~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 --P----CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred --C----CCHHHHHhhccCCCEEEEEeCCC
Confidence 2 24689999999999999986543
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=97.48 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=74.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c---ccee-ccccccCCCCC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L---FGLY-HDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l---~~~~-~d~~e~f~~yp-~sFDlVh~~ 139 (221)
...+|||+|||+|.++..+++......+++.+|.+ .+++.+.++- + +..+ .|.. .+ +++ .+||+|+++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~-~~~~~~~D~I~~~ 128 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-AL-PFPDNSFDAVTIA 128 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cC-CCCCCCccEEEEe
Confidence 45789999999999999988764212357888876 4777777652 1 1122 2321 12 244 899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.+++++. ++..+|.++.++|+|||.+++.+.
T Consensus 129 ~~l~~~~-~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 129 FGLRNVP-DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccccCC-CHHHHHHHHHHhccCCcEEEEEEe
Confidence 9998888 899999999999999999998753
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-10 Score=98.65 Aligned_cols=98 Identities=17% Similarity=0.298 Sum_probs=73.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc--cceeccccccCCCC-CCccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL--FGLYHDWCESFNTY-PRTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl--~~~~~d~~e~f~~y-p~sFDlVh~~~v 141 (221)
...+|||+|||+|.++..+++.+. .++.+|.+ .+++.+.++ ++ +.....-.+.++.. +++||+|+|+.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 467899999999999999988754 36778875 477766654 22 11222111222222 489999999999
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++|.. ++..+|.++.++|+|||.+++++.
T Consensus 122 l~~~~-~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 122 LEHVP-DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HHhCC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 99888 899999999999999999999864
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7e-10 Score=93.62 Aligned_cols=145 Identities=13% Similarity=0.190 Sum_probs=90.4
Q ss_pred cccchh--hhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----C
Q 027609 42 PEDFTA--DYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----G 114 (221)
Q Consensus 42 ~~~f~~--d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----G 114 (221)
.+.|.. +.-.++..++..-...+ ......+|||+|||+|.++..++..-....+++.+|.+ ++++.+.++ |
T Consensus 12 d~~~~~~~~~~~t~~~~r~~~l~~l--~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g 89 (198)
T PRK00377 12 DEEFERDEEIPMTKEEIRALALSKL--RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG 89 (198)
T ss_pred hHHHccCCCCCCCHHHHHHHHHHHc--CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC
Confidence 344554 33466666654222223 33346789999999999998876541111257888885 577766544 4
Q ss_pred ccc---ee-ccccccCCCCCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC-hhhHHHHHHHHHhcCCeE
Q 027609 115 LFG---LY-HDWCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 115 l~~---~~-~d~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-~~~~~~i~~i~~~l~W~~ 189 (221)
+.. .+ .|..+.++..+..||.|.+... .. ++..++.++.|+|||||.+++... .+.+.++...++...++.
T Consensus 90 ~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~---~~-~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 90 VLNNIVLIKGEAPEILFTINEKFDRIFIGGG---SE-KLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNL 165 (198)
T ss_pred CCCCeEEEEechhhhHhhcCCCCCEEEECCC---cc-cHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCe
Confidence 321 11 2322212223478999998532 23 678999999999999999998533 344667777777777765
Q ss_pred EEe
Q 027609 190 RMI 192 (221)
Q Consensus 190 ~~~ 192 (221)
.+.
T Consensus 166 ~~~ 168 (198)
T PRK00377 166 EIT 168 (198)
T ss_pred EEE
Confidence 543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.1e-10 Score=104.18 Aligned_cols=130 Identities=12% Similarity=0.085 Sum_probs=86.7
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc---ceeccccccCCCCC-CccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF---GLYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~---~~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
..+|||+|||+|.++..|+++.-. ..++.+|.+ .+++.+.+. +.. .+-..++..+..++ .+||+|.|+--
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcC
Confidence 458999999999999999887421 257888887 588877654 211 11111122344455 69999999877
Q ss_pred ccccc--c--cHHHHHHHhhhhccCCeEEEEEc--ChhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 142 FSTIK--K--SLKAVVAEVDRILRPDGNLILRD--DAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 142 ~~h~~--~--d~~~vL~EmdRVLRPGG~~ii~d--~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
|+.-. . ....++.+..|+|||||.+++-- ..++...+++++. .+....++.+=+|+-++|
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~~kf~vl~a~k 373 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATNNKFVVLKAVK 373 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccCCCEEEEEEEe
Confidence 75321 1 34578999999999999998884 3344555555433 344445556677887777
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-10 Score=96.55 Aligned_cols=97 Identities=8% Similarity=0.113 Sum_probs=74.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-------ccee-ccccccCCCCCCccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-------FGLY-HDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-------~~~~-~d~~e~f~~yp~sFDlVh~~ 139 (221)
.+..+|||+|||+|.++..|++++. .++++|.+ ++++.+.++.- +... .| +...+++||+|.|.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d----~~~~~~~fD~ii~~ 126 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVND----LLSLCGEFDIVVCM 126 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC----hhhCCCCcCEEEEh
Confidence 4578999999999999999998764 46889986 59988887631 1111 22 22234899999999
Q ss_pred cccccccc-cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 140 HLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 140 ~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.++.|++. ++..++.++.|+++||+++.+....
T Consensus 127 ~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~ 160 (219)
T TIGR02021 127 DVLIHYPASDMAKALGHLASLTKERVIFTFAPKT 160 (219)
T ss_pred hHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 99988864 6889999999999999888876443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-09 Score=91.18 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=75.4
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc-ee-ccccccCCCCC-CccCeeeecccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG-LY-HDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~-~~-~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
..+|||+|||+|.++..++..+. -+++.+|.+ .+++.+.++ |+.- ++ .|+.+ .++ ++||+|.|+.-+
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVVVSNPPY 111 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEEEECCCC
Confidence 56899999999999999988764 257888876 477766553 3311 11 24322 245 899999997433
Q ss_pred ccccc--------------------cHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeEE
Q 027609 143 STIKK--------------------SLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 143 ~h~~~--------------------d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~~ 190 (221)
.+-.. ....++.++.|+|||||.+++.... ....++.+.+++-.+++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 180 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAE 180 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeE
Confidence 21110 1456888999999999999985322 134455555666666544
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.6e-10 Score=97.48 Aligned_cols=99 Identities=14% Similarity=0.251 Sum_probs=74.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-ce-eccccccCCCCC-CccCeeeec
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-GL-YHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~~-~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
.....+|||+|||.|.++..+.+.+. +++.+|.+ ++++.+.++ ++. .. ..+..+ ++..+ .+||+|+|+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fD~Ii~~ 121 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEE-LAAEHPGQFDVVTCM 121 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHH-hhhhcCCCccEEEEh
Confidence 33567899999999999999988764 46788875 477766654 221 11 122221 22223 899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.++.|.. ++..+|.++.|+|+|||.+++.+.
T Consensus 122 ~~l~~~~-~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 122 EMLEHVP-DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hHhhccC-CHHHHHHHHHHHcCCCcEEEEEec
Confidence 9999988 899999999999999999999864
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=100.85 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=86.0
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccceeccccccCCCCCCccCeeeecccccccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIK 146 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~ 146 (221)
.+|||+|||+|.++..++++.-. ..++.+|.+ .+++.+.+ .|+.+.+. ++..+...+++||+|.|+-.||.-.
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 47999999999999999887421 257888886 47776654 34433222 1223433458999999998887422
Q ss_pred ----ccHHHHHHHhhhhccCCeEEEEEcC--hhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEec
Q 027609 147 ----KSLKAVVAEVDRILRPDGNLILRDD--AETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT 206 (221)
Q Consensus 147 ----~d~~~vL~EmdRVLRPGG~~ii~d~--~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K~ 206 (221)
+..+.++.++.|.|||||.++|-.. .++-+.+++.+... + ..-.+++=+|+-|+|.
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~--~la~~~~f~v~~a~~~ 337 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--E--VLAQTGRFKVYRAIMT 337 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--E--EEEeCCCEEEEEEEcc
Confidence 1578999999999999999987643 33444555544321 2 2224456778877763
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-10 Score=99.04 Aligned_cols=116 Identities=16% Similarity=0.235 Sum_probs=78.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-----CHHHHHHcCcc--ceeccccccCCCCCCccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-----TLPIIYERGLF--GLYHDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-----~l~~a~eRGl~--~~~~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
+..++||+|||.|.-|.+|+++|.. |+.+|.+. ..++|.++++. ....|..+ + .+++.||+|.|.-+|
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~-~-~~~~~yD~I~st~v~ 104 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLAEEEGLDIRTRVADLND-F-DFPEEYDFIVSTVVF 104 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC-B-S-TTTEEEEEEESSG
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHhhcCceeEEEEecchh-c-cccCCcCEEEEEEEe
Confidence 4568999999999999999999853 57777642 44567777774 12334322 2 246899999999899
Q ss_pred ccccc-cHHHHHHHhhhhccCCeEEEEEcC-----------hhh---HHHHHHHHHhcCCeEEEe
Q 027609 143 STIKK-SLKAVVAEVDRILRPDGNLILRDD-----------AET---IVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 143 ~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~-----------~~~---~~~i~~i~~~l~W~~~~~ 192 (221)
.|++. ....++..|..-|+|||++++-.. .++ -.++...+. .|++..+
T Consensus 105 ~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 105 MFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp GGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred ccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 98886 667899999999999999988421 122 245555555 5998654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.07 E-value=6e-10 Score=84.76 Aligned_cols=93 Identities=20% Similarity=0.152 Sum_probs=65.3
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccce--e-ccccccCCCC-CCccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFGL--Y-HDWCESFNTY-PRTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~~--~-~d~~e~f~~y-p~sFDlVh~~~v 141 (221)
..+|||+|||+|.++..++++.-. .+++++|.+ .+++.+.+ .++... + .|.. ...++ +.+||.|.+...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAP-EALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccc-ccChhhcCCCCEEEECCc
Confidence 569999999999999999886211 367888886 47766543 233221 1 2211 11223 379999999765
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.. ....++.++.|+|||||++++.
T Consensus 98 ~~----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 GG----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ch----hHHHHHHHHHHHcCCCCEEEEE
Confidence 54 3458999999999999999986
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.8e-10 Score=94.09 Aligned_cols=117 Identities=20% Similarity=0.332 Sum_probs=81.0
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCCCC-CccCeeeecccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
..+|||+|||+|.++..+++.... .+++++|.+ .+++.+.++ |+.. .++ +..+.+++ ++||+|.|+--+
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQ--SDWFEPLPGGKFDLIVSNPPY 164 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE--CchhccCcCCceeEEEECCCC
Confidence 458999999999999999886211 257888875 477666543 4422 222 12233465 899999985332
Q ss_pred cc------ccc-------------------cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE
Q 027609 143 ST------IKK-------------------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 143 ~h------~~~-------------------d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
.. +.. ....++.++.|+|+|||.+++.........+++++++.+++..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 21 110 1246789999999999999998777667888888888888643
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.8e-10 Score=95.22 Aligned_cols=116 Identities=13% Similarity=0.156 Sum_probs=74.7
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eec-cccccCC--CCC-CccCeeeec
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYH-DWCESFN--TYP-RTYDLLHAD 139 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~-d~~e~f~--~yp-~sFDlVh~~ 139 (221)
-..|||+|||+|.++..|+.+.-. .+++++|.+ ++++.+.++ |+.+ +++ |. ..++ .++ ++||.|+++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~-~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDA-NELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCH-HHHHHhhCCCCceeEEEEE
Confidence 468999999999999999887322 367888886 477665543 4432 222 22 1122 146 799999887
Q ss_pred ccccccccc--------HHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHh-cCCeE
Q 027609 140 HLFSTIKKS--------LKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKS-LHWDV 189 (221)
Q Consensus 140 ~v~~h~~~d--------~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~-l~W~~ 189 (221)
.... |++. ...+|.++.|+|||||.+++..... ....+...+.. -+|+.
T Consensus 95 ~pdp-w~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 FPDP-WPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CCCc-CCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 4322 2211 1579999999999999998875544 45555444433 33554
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=88.23 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=80.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-----ceeccccccCCCCC-CccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-----GLYHDWCESFNTYP-RTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-----~~~~d~~e~f~~yp-~sFDlVh~ 138 (221)
+..+|||+|||.|.++..|++++. +++++|.+ ++++.+.++ ++. -..+|+.+ +++ .+||+|.+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---PFRGDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc---cccccCceEEEE
Confidence 467899999999999999998853 57888875 577766443 221 12345433 445 68999988
Q ss_pred cccccccc--------------------ccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEEE
Q 027609 139 DHLFSTIK--------------------KSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 139 ~~v~~h~~--------------------~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~~ 191 (221)
+.-+.+.. .....++.++.|+|||||.+++-.... ..+.+.+.+....|+...
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 75443210 025678999999999999988764432 356778888888887653
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.9e-10 Score=94.04 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=70.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----CccceeccccccCCCCCCccCeeeecccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGLYHDWCESFNTYPRTYDLLHADHLFST 144 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h 144 (221)
...+|||+|||+|.++..|++++. .++++|.+ ++++.+.++ |+...++-....++..+++||+|.|..+++|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 467999999999999999998864 36888886 588888775 2211111001123323489999999999998
Q ss_pred ccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 145 IKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 145 ~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++. +...++.++.|++++|+.+.+..
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEECC
Confidence 774 66789999999887666655543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-10 Score=100.47 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=75.3
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----ccc---eeccccccCCCCC-CccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LFG---LYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~~---~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
=-.||.+|||+|.--..+-..+.- +|+.+|.+ +|.+++..+- -.. .++.-.|.++..+ .|||.|.|..|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~--svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPIN--SVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred ccceEEecccCCCCcccccCCCCc--eEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 345899999999765555444322 46888875 5777654442 111 4455578887777 99999999999
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+.... |+..+|.|+.|||||||.+++-++.
T Consensus 155 LCSve-~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 155 LCSVE-DPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EeccC-CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 98777 8999999999999999999999874
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-09 Score=92.16 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=78.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHH----HHcC-ccceeccccccC--CCCCCccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPII----YERG-LFGLYHDWCESF--NTYPRTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a----~eRG-l~~~~~d~~e~f--~~yp~sFDlVh~~~v 141 (221)
...+|||+|||+|.++..|++.-- ...|.++|.+ .|++.+ .++. +.....|..++. ..++.+||+|.+...
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVA 150 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCC
Confidence 357899999999999999988621 1257888886 466633 3331 222334533211 123577999876522
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE------cCh----hhHHHHHHHHHhcCCeEEEe-ec---CCCeeEEEEEe
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR------DDA----ETIVEVEDLVKSLHWDVRMI-YT---NDNQGMLCVHK 205 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~------d~~----~~~~~i~~i~~~l~W~~~~~-~~---~~~e~~l~~~K 205 (221)
. +.....+|.|+.|+|||||.+++. |.. ...++..+.+.+-..+..-. +. ..+.-.++++|
T Consensus 151 ~---p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 151 Q---PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred C---hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEEc
Confidence 1 212345689999999999999993 321 11223345566666665422 21 22456666665
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.2e-11 Score=105.33 Aligned_cols=122 Identities=19% Similarity=0.278 Sum_probs=94.0
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccce-eccccccCCC-C-CCccCeeeeccc
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGL-YHDWCESFNT-Y-PRTYDLLHADHL 141 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~-~~d~~e~f~~-y-p~sFDlVh~~~v 141 (221)
.+.+.++++||+|||+|-++-.|.++-. .++++|.| +|++.|.++|+-.. ++.=...|.. - ++-||||.+..|
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 5567799999999999999999987632 47999998 69999999998542 2211122543 3 499999999999
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcCh----h-h-----------HHHHHHHHHhcCCeEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDA----E-T-----------IVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~----~-~-----------~~~i~~i~~~l~W~~~~ 191 (221)
|..+- +.+.++.=..+.|.|||.|++|-.. . + -..+...+.+-..++..
T Consensus 198 l~YlG-~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 198 LPYLG-ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIA 262 (287)
T ss_pred HHhhc-chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEE
Confidence 99777 8999999999999999999999211 0 0 24567777777777653
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=97.38 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=84.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcccee----ccccccCCCCC--CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLY----HDWCESFNTYP--RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~----~d~~e~f~~yp--~sFDlVh~~~v~ 142 (221)
+.++|||+|||+|-++-+.++-|+. .++++|.. ..++++++.-..+-+ +.-+-..+..+ +.||+|.|+ .+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN-IL 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN-IL 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEeh-hh
Confidence 5899999999999999999888875 36888884 477777776322211 11111122355 599999998 34
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEEEeec
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIYT 194 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~~~~~ 194 (221)
.+.. ..+.-++.|.|||||++|+|---. ..+.+.+.+.+-.|.+.....
T Consensus 239 A~vl---~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 239 AEVL---VELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred HHHH---HHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEe
Confidence 4333 577788999999999999996432 256677777777888765433
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.1e-09 Score=91.28 Aligned_cols=132 Identities=18% Similarity=0.288 Sum_probs=90.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc---Cccc---ee-ccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER---GLFG---LY-HDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR---Gl~~---~~-~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|+...- ..+++++|.+ .+++.+.++ +... .+ .|+ +.+++ ++||+|.|+-
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~np 183 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNP 183 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECC
Confidence 456899999999999999987631 1257888886 588877765 2211 22 243 33444 8999999852
Q ss_pred ccc--------------ccc-----------ccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE-E-ee
Q 027609 141 LFS--------------TIK-----------KSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR-M-IY 193 (221)
Q Consensus 141 v~~--------------h~~-----------~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~-~-~~ 193 (221)
-+. |-+ +....++.++.++|+|||++++--.....+.+..++.+..+... . .|
T Consensus 184 Py~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d 263 (275)
T PRK09328 184 PYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKD 263 (275)
T ss_pred CcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecC
Confidence 111 000 03467888999999999999997665566778888887777532 2 34
Q ss_pred cCCCeeEEEEEe
Q 027609 194 TNDNQGMLCVHK 205 (221)
Q Consensus 194 ~~~~e~~l~~~K 205 (221)
-.+.+++++++|
T Consensus 264 ~~~~~r~~~~~~ 275 (275)
T PRK09328 264 LAGRDRVVLGRR 275 (275)
T ss_pred CCCCceEEEEEC
Confidence 557888988865
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=99.24 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=74.5
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC--CHHHHHHcCccc---eecc---ccccCCCCCCccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD--TLPIIYERGLFG---LYHD---WCESFNTYPRTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~--~l~~a~eRGl~~---~~~d---~~e~f~~yp~sFDlVh 137 (221)
|..-+.++|||||||.|.++-.++.+|+. .|+++|.+. .+++..-+-+.| .++- --|.++. .++||+|.
T Consensus 111 l~~L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF 187 (315)
T PF08003_consen 111 LPDLKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVF 187 (315)
T ss_pred hCCcCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEE
Confidence 44556899999999999999999999875 367777642 344322222332 1111 1233443 59999999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|-.||=|.. +|...|.++...|||||-+|+-+
T Consensus 188 ~MGVLYHrr-~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 188 SMGVLYHRR-SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EeeehhccC-CHHHHHHHHHHhhCCCCEEEEEE
Confidence 999998888 99999999999999999999875
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=94.56 Aligned_cols=96 Identities=15% Similarity=0.058 Sum_probs=69.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHH-HHcCccc------------------eeccccccCCCC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPII-YERGLFG------------------LYHDWCESFNTY 129 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a-~eRGl~~------------------~~~d~~e~f~~y 129 (221)
...+|||+|||.|..+.+|+++|- +|+++|.+ ..++.+ .+.|+.. .+.|..+ ++..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~ 109 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA-LTAA 109 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC-CCcc
Confidence 357999999999999999999984 46888886 466653 4444421 2233211 1211
Q ss_pred C-CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEE
Q 027609 130 P-RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 130 p-~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
. .+||+|....+|+|++. ....++..|.|+|||||++++-
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 2 57999999999999876 5678999999999999974443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.2e-09 Score=93.96 Aligned_cols=130 Identities=15% Similarity=0.204 Sum_probs=92.2
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCC-CccCeeeec--
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYP-RTYDLLHAD-- 139 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp-~sFDlVh~~-- 139 (221)
.+|||+|||+|.++..|+...- ..+++++|.+ ++++++.++ |+.+ . ..|+.+ +++ ..||+|.|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~---~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE---PLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc---cCcCCCccEEEECCC
Confidence 5899999999999999988631 1257888886 488777664 3321 2 245544 345 589999986
Q ss_pred -----------cccccccc-----------cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHH-hcCCeE-E-Eeec
Q 027609 140 -----------HLFSTIKK-----------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVK-SLHWDV-R-MIYT 194 (221)
Q Consensus 140 -----------~v~~h~~~-----------d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~-~l~W~~-~-~~~~ 194 (221)
.++.|.+. ....++.+..++|+|||++++--.......+.+++. ...|.. . ..|-
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~ 271 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDL 271 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCC
Confidence 12222221 356789999999999999999888777788888877 466753 2 3455
Q ss_pred CCCeeEEEEEe
Q 027609 195 NDNQGMLCVHK 205 (221)
Q Consensus 195 ~~~e~~l~~~K 205 (221)
.+.++++++++
T Consensus 272 ~g~~R~~~~~~ 282 (284)
T TIGR00536 272 NGKERVVLGFY 282 (284)
T ss_pred CCCceEEEEEe
Confidence 67899998875
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=102.54 Aligned_cols=118 Identities=17% Similarity=0.110 Sum_probs=76.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHH----HHHHcCccce---eccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLP----IIYERGLFGL---YHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~----~a~eRGl~~~---~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
....+||+|||+|.++..|+.+.-. .+++++|.+ .+++ .+.++|+.++ ..|.-+-+..+| ++||.|+++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4568999999999999999987422 367888875 3544 4445566442 234322233466 9999999863
Q ss_pred cccccccc------HHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhc-CCeE
Q 027609 141 LFSTIKKS------LKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSL-HWDV 189 (221)
Q Consensus 141 v~~h~~~d------~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l-~W~~ 189 (221)
.. .|+.. ...+|.|+.|+|||||.+.++++. ++.+.+...+... +++.
T Consensus 201 Pd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 201 PV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CC-CccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 22 23221 168999999999999999887554 4455544444333 4443
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-10 Score=99.70 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=78.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccc--------cccCCCCCCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDW--------CESFNTYPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~--------~e~f~~yp~sFDlVh~~~ 140 (221)
..|.++|+|||+|.-+..+++.. =+|+++|.+ .||+++... ....+++- .+.|.-=++|.|||.|.+
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehhhh
Confidence 35589999999994444455542 267899987 599988766 44444321 111221269999999999
Q ss_pred ccccccccHHHHHHHhhhhccCCe-EEE---EEcChhhHHHHHHHHHhcCCeE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDG-NLI---LRDDAETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG-~~i---i~d~~~~~~~i~~i~~~l~W~~ 189 (221)
|+| |= |.+.++.++.|||||.| .+. ..|......++..++.+++|..
T Consensus 109 a~H-WF-dle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~~ 159 (261)
T KOG3010|consen 109 AVH-WF-DLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDST 159 (261)
T ss_pred hHH-hh-chHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhcc
Confidence 997 77 78999999999999877 332 2343334567777778888864
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.4e-09 Score=94.29 Aligned_cols=121 Identities=20% Similarity=0.268 Sum_probs=81.4
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCCC-CccCeeeecc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
..+|||+|||+|.++..|+++.- ..+++++|.+ .+++.+.++ |+.. .+ .|+ +.+++ ++||+|.|+-
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~---~~~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL---FAALPGRKYDLIVSNP 197 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccCCCCccEEEECC
Confidence 46899999999999999988631 1257888986 588777665 5422 22 343 23455 6899999861
Q ss_pred ------cc-------ccccc-----------cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEeecCC
Q 027609 141 ------LF-------STIKK-----------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTND 196 (221)
Q Consensus 141 ------v~-------~h~~~-----------d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~ 196 (221)
.+ .|.+. ....++.++.++|+|||++++--.... ..+.+++....|.-.-.++..
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~~~ 276 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFENGG 276 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecCCC
Confidence 11 11110 125678999999999999998766544 688888887766554444433
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-09 Score=99.13 Aligned_cols=98 Identities=21% Similarity=0.385 Sum_probs=76.7
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHH----HHHHcCccc----eeccccccCCCCCCccCe
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLP----IIYERGLFG----LYHDWCESFNTYPRTYDL 135 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~----~a~eRGl~~----~~~d~~e~f~~yp~sFDl 135 (221)
+.-..+.+|||+|||-|+++..++++ +|. |++++.| ++.+ .+.++|+.. .++|| ..++..||-
T Consensus 68 l~L~~G~~lLDiGCGWG~l~~~aA~~y~v~---V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~----rd~~e~fDr 140 (283)
T COG2230 68 LGLKPGMTLLDIGCGWGGLAIYAAEEYGVT---VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY----RDFEEPFDR 140 (283)
T ss_pred cCCCCCCEEEEeCCChhHHHHHHHHHcCCE---EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc----cccccccce
Confidence 33344899999999999999999987 775 4777765 3554 456678763 34554 235566999
Q ss_pred eeeccccccccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 136 LHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 136 Vh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|.+-..|+|.-. +...++.-++++|+|||.+++-+
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 999999999875 79999999999999999998873
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-09 Score=94.24 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=80.2
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHH-HHHcCccce------------------eccccccCCCCC
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPI-IYERGLFGL------------------YHDWCESFNTYP 130 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~-a~eRGl~~~------------------~~d~~e~f~~yp 130 (221)
..+|||+|||.|..+.+|+++|. +|+++|.+ ..++. +.++|+... +.|..+ +.+.+
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~-l~~~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA-LTAAD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC-CCccc
Confidence 46999999999999999999985 46888986 46664 456666321 222211 22223
Q ss_pred -CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEE-E----cC----hh---hHHHHHHHHHhcCCeEEE
Q 027609 131 -RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLIL-R----DD----AE---TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 131 -~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii-~----d~----~~---~~~~i~~i~~~l~W~~~~ 191 (221)
.+||+|....+|+|++. ....++..|.++|||||++++ . +. .+ ..++|.+++. -+|++..
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~-~~~~i~~ 187 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYA-GCFEIEL 187 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhc-CCceEEE
Confidence 68999999999999876 668999999999999996443 2 11 11 1456666553 3487754
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.5e-09 Score=85.02 Aligned_cols=96 Identities=23% Similarity=0.330 Sum_probs=65.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccc--e-eccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFG--L-YHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~--~-~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|+.+.... .++.+|.+ ++++.+.+ .++.. + .+|+. ...+ ..||+|.|+-
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~---~~~~~~~fD~Iv~NP 106 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDA-KVTAVDINPDALELAKRNAERNGLENVEVVQSDLF---EALPDGKFDLIVSNP 106 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCE-EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTT---TTCCTTCEEEEEE--
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCcccccccccccc---ccccccceeEEEEcc
Confidence 47789999999999999999985432 47788875 46666655 33332 2 33543 3445 9999999984
Q ss_pred ccccccc----cHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKK----SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
=++.-.. -...++.+..+.|||||.+++-
T Consensus 107 P~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 107 PFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp -SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 3321111 3578899999999999988443
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-09 Score=91.60 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=63.5
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCCCCccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~yp~sFDlVh~~ 139 (221)
....+|||+|||+|.+++.|++.--..-.++++|.+ ++++.+.++ |+.+ .+ .|..+.++ ...+||+|++.
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~ 149 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAIIVT 149 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEEEc
Confidence 346789999999999998887641001146788875 577666543 4322 22 34333221 12799999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
..+.|++ .|+.|+|+|||.+++-.
T Consensus 150 ~~~~~~~-------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTIP-------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchhh-------HHHHHhcCcCcEEEEEE
Confidence 8877655 37789999999999864
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-09 Score=75.01 Aligned_cols=94 Identities=22% Similarity=0.322 Sum_probs=66.0
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHH---HcCc---cceec-cccccCCCC-CCccCeeeeccccc
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIY---ERGL---FGLYH-DWCESFNTY-PRTYDLLHADHLFS 143 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~---eRGl---~~~~~-d~~e~f~~y-p~sFDlVh~~~v~~ 143 (221)
+|+|+|||.|.++..+++.+ ..++..+|.+ +.++.+. +.+. +..++ |..+ +... +.+||+|.++.+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE-LPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhh-hccccCCceEEEEEcccee
Confidence 48999999999999998733 2256777765 3555444 1111 11222 3222 2222 38999999999998
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEE
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
++..+...++..+.+.|||||++++.
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 73338899999999999999999987
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-09 Score=94.58 Aligned_cols=127 Identities=22% Similarity=0.211 Sum_probs=82.4
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----CccceeccccccCCCCC-CccCeeeecccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGLYHDWCESFNTYP-RTYDLLHADHLFST 144 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h 144 (221)
..+|||+|||+|-+|-+-++.|+. .|+++|.. ..++.+.+. |+...+. .. .....+ ..||+|.|+-+..
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~~~~-v~-~~~~~~~~~~dlvvANI~~~- 236 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVEDRIE-VS-LSEDLVEGKFDLVVANILAD- 236 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TTCEE-ES-CTSCTCCS-EEEEEEES-HH-
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCeeEE-EE-EecccccccCCEEEECCCHH-
Confidence 579999999999888777777764 36777774 356655554 3322111 01 112344 9999999984332
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEEEeecCCCeeEEEEEec
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT 206 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K~ 206 (221)
-....+-++.+.|+|||++|+|--.. ..+.+.+.++. .|+......++.=.-|+++|+
T Consensus 237 ---vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 237 ---VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp ---HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE-
T ss_pred ---HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEECCEEEEEEEeC
Confidence 23567778999999999999995432 35667777776 888765555555566777764
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.1e-09 Score=91.16 Aligned_cols=92 Identities=17% Similarity=0.122 Sum_probs=62.3
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCC-C-CccCeeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTY-P-RTYDLLHA 138 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~y-p-~sFDlVh~ 138 (221)
....+|||+|||+|.+++.|++.......++++|.+ ++++.+.++ |+.. +. .| .+..+ + ..||+|++
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd---~~~~~~~~~~fD~I~~ 151 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD---GTLGYEENAPYDRIYV 151 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC---cccCCCcCCCcCEEEE
Confidence 347899999999999998887652111246778875 577777665 3322 22 23 22233 4 89999999
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
...+.+++ .++.+.|||||.+++--
T Consensus 152 ~~~~~~~~-------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 152 TAAGPDIP-------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcccch-------HHHHHhhCCCcEEEEEE
Confidence 87665443 35567899999999853
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-09 Score=96.04 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=70.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC---ccc-----eeccccccCCCCCCc-----cCe
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG---LFG-----LYHDWCESFNTYPRT-----YDL 135 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG---l~~-----~~~d~~e~f~~yp~s-----FDl 135 (221)
...+|||+|||+|.++..|++......+++++|.+ +||+.+.++- .++ +..|..+.+ +++.. ..+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCeEE
Confidence 35689999999999999998873212367999997 5998887761 122 334543322 23322 334
Q ss_pred eeeccccccccc-cHHHHHHHhhhhccCCeEEEEE
Q 027609 136 LHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 136 Vh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+.+...+.++.. +...+|.++.++|+|||.+++.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 555567777664 6778999999999999999986
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.9e-09 Score=93.54 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=100.0
Q ss_pred ccc-CCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccc------eeccccccCCCCC-Cc
Q 027609 63 GMG-INWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFG------LYHDWCESFNTYP-RT 132 (221)
Q Consensus 63 ~L~-i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~------~~~d~~e~f~~yp-~s 132 (221)
++. |.....++|.|+|||+|.-++.|+.| +.- .++++|.| +|++.|.+| ++. -+++|| | ..
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A--~i~GiDsS~~Mla~Aa~r-lp~~~f~~aDl~~w~------p~~~ 92 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDA--VITGIDSSPAMLAKAAQR-LPDATFEEADLRTWK------PEQP 92 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCC--eEeeccCCHHHHHHHHHh-CCCCceecccHhhcC------CCCc
Confidence 444 66677999999999999999999998 432 37999997 699999999 443 233443 5 89
Q ss_pred cCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChh----hHHHHHHHHHhcCCeEEEee---------------
Q 027609 133 YDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE----TIVEVEDLVKSLHWDVRMIY--------------- 193 (221)
Q Consensus 133 FDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~----~~~~i~~i~~~l~W~~~~~~--------------- 193 (221)
+||+.++.+|+-++ |-..+|.-.---|.|||++.+.=++. .-..|.+.++..-|...+.+
T Consensus 93 ~dllfaNAvlqWlp-dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy 171 (257)
T COG4106 93 TDLLFANAVLQWLP-DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYY 171 (257)
T ss_pred cchhhhhhhhhhcc-ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHH
Confidence 99999999999767 66678888888899999999983321 23445666665556543221
Q ss_pred ---cCCCeeEEEEEecccCC
Q 027609 194 ---TNDNQGMLCVHKTYWRP 210 (221)
Q Consensus 194 ---~~~~e~~l~~~K~~w~~ 210 (221)
.....+|=|+.+.|-.+
T Consensus 172 ~lLa~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 172 ELLAPLACRVDIWHTTYYHQ 191 (257)
T ss_pred HHhCcccceeeeeeeecccc
Confidence 12356777777777665
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.9e-09 Score=89.03 Aligned_cols=93 Identities=20% Similarity=0.134 Sum_probs=62.3
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCCCCccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~yp~sFDlVh~~~ 140 (221)
....+|||+|||+|.+++.|++..-....|+++|.+ ++++.+.++ |+.+ .+ .|..+.+. -...||+|+++.
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~ 154 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-PLAPYDRIYVTA 154 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-ccCCCCEEEEcC
Confidence 346799999999999999998763221246777775 577766554 4422 22 34322111 127899999886
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
...+++ .++.+.|+|||++++.
T Consensus 155 ~~~~~~-------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 155 AGPKIP-------EALIDQLKEGGILVMP 176 (215)
T ss_pred Cccccc-------HHHHHhcCcCcEEEEE
Confidence 655443 4577899999999985
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.1e-08 Score=93.99 Aligned_cols=135 Identities=10% Similarity=0.098 Sum_probs=91.1
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-cce-eccccccCCCCCCccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FGL-YHDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~~-~~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
..+|||+|||+|.++..|+.+.. ..+++++|.+ .+++.+.++ |. +.. ..|+.+...+-..+||+|.|+-=..
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 34899999999999999876421 1257888886 588877765 22 112 2354332111126899999963221
Q ss_pred c-----c--------c--------c---cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE--EeecCCC
Q 027609 144 T-----I--------K--------K---SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR--MIYTNDN 197 (221)
Q Consensus 144 h-----~--------~--------~---d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~--~~~~~~~ 197 (221)
. . + + ....++.+..+.|+|||++++--..+..+.+++++.+..|... ..|-.+.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~ 410 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGL 410 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCC
Confidence 0 0 0 0 1336667778899999999987666778899999998888653 4466778
Q ss_pred eeEEEEEec
Q 027609 198 QGMLCVHKT 206 (221)
Q Consensus 198 e~~l~~~K~ 206 (221)
++++++++.
T Consensus 411 dR~v~~~~~ 419 (423)
T PRK14966 411 DRVTLGKYM 419 (423)
T ss_pred cEEEEEEEh
Confidence 999998763
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=91.07 Aligned_cols=128 Identities=20% Similarity=0.319 Sum_probs=82.2
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCCC-CccCeeeeccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
.+|||+|||+|.++.+|+.+.- ..+++++|.+ .+++.+.++ |+.. .+ .|+.+ ..| ++||+|.|+-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~---~l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA---ALPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh---hCCCCCccEEEECCC
Confidence 6899999999999999987621 1357888986 578776655 4422 22 24322 345 78999998610
Q ss_pred -------------cccccc-----------cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEeecCCC
Q 027609 142 -------------FSTIKK-----------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDN 197 (221)
Q Consensus 142 -------------~~h~~~-----------d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~~ 197 (221)
+.|.+. ....++.++.++|+|||.+++--... ...+.+++....+.- ...+...
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~-~~~~~~~ 288 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTW-LEFENGG 288 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEE-EEecCCC
Confidence 111110 13578899999999999999965443 445777776654322 2223445
Q ss_pred eeEEEEEe
Q 027609 198 QGMLCVHK 205 (221)
Q Consensus 198 e~~l~~~K 205 (221)
+.++++.+
T Consensus 289 ~~~~~~~~ 296 (307)
T PRK11805 289 DGVFLLTR 296 (307)
T ss_pred ceEEEEEH
Confidence 66666554
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.9e-09 Score=91.08 Aligned_cols=101 Identities=19% Similarity=0.287 Sum_probs=73.8
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccc-eeccccccCCCCCCccCeeeecccccc
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADHLFST 144 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~-~~~d~~e~f~~yp~sFDlVh~~~v~~h 144 (221)
.++...++|+|+|+|.|.++.+++++--. +.++-.|.+..++.+.+..-+. +-+| -|.++|. +|++...+++|+
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~v~~~~~~~~rv~~~~gd---~f~~~P~-~D~~~l~~vLh~ 170 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDLPEVIEQAKEADRVEFVPGD---FFDPLPV-ADVYLLRHVLHD 170 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE-HHHHCCHHHTTTEEEEES----TTTCCSS-ESEEEEESSGGG
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCC-CcceeeccHhhhhcccccccccccccc---HHhhhcc-ccceeeehhhhh
Confidence 56778899999999999999999876211 1345566666666555522122 3344 3467788 999999999999
Q ss_pred ccc-cHHHHHHHhhhhccCC--eEEEEEcC
Q 027609 145 IKK-SLKAVVAEVDRILRPD--GNLILRDD 171 (221)
Q Consensus 145 ~~~-d~~~vL~EmdRVLRPG--G~~ii~d~ 171 (221)
|.+ +-..+|.-+.+.|+|| |.++|-|.
T Consensus 171 ~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 171 WSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp S-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 997 7788999999999999 99999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.1e-08 Score=90.01 Aligned_cols=97 Identities=18% Similarity=0.143 Sum_probs=65.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-----CCHHHHHHc-CccceeccccccC-CCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-----DTLPIIYER-GLFGLYHDWCESF-NTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-----~~l~~a~eR-Gl~~~~~d~~e~f-~~yp-~sFDlVh~~~v 141 (221)
...+|||+|||+|+++..|++.--..-.|..+|.+ ++++.+.+| .+..++.|...+. ...+ .+||+|.|+..
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC
Confidence 45789999999999999998862111135666654 266666665 3444555643321 0113 78999999853
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+ +++...++.|+.|+|||||+|+|.
T Consensus 212 -~--pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 212 -Q--PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred -C--cchHHHHHHHHHHhccCCCEEEEE
Confidence 2 324556778999999999999995
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-08 Score=83.63 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=70.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCCCCccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~yp~sFDlVh~~~ 140 (221)
....+|||+|||+|.++..++... ....++.+|.+ ++++.+.++ |+.. ++ .|..+.+......+|.++...
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 346789999999999998887542 11257888875 577766653 4422 22 222121211223467665431
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCC
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHW 187 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W 187 (221)
..+...++.++.|+|+|||.+++..... .+..+.+.++.+.+
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 160 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA 160 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence 1256799999999999999999987543 34445555655533
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-08 Score=92.49 Aligned_cols=132 Identities=9% Similarity=0.094 Sum_probs=87.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCC-CCHHHHHH-----cCccc----eeccccccCCCCCCccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP-DTLPIIYE-----RGLFG----LYHDWCESFNTYPRTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~-~~l~~a~e-----RGl~~----~~~d~~e~f~~yp~sFDlVh~ 138 (221)
..++|+|+|||.|++++.+.... .....++++|.+ ++++.|++ .|+-. ..+|..+ ..+....||+|.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~-~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD-VTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh-cccccCCcCEEEE
Confidence 67999999999998877755421 111246788875 46665554 33322 2345433 1111278999999
Q ss_pred cccccccc-ccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHh-------cCCeEEEeecCC---CeeEEEEEecc
Q 027609 139 DHLFSTIK-KSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKS-------LHWDVRMIYTND---NQGMLCVHKTY 207 (221)
Q Consensus 139 ~~v~~h~~-~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~-------l~W~~~~~~~~~---~e~~l~~~K~~ 207 (221)
. +++++. .++..+|..+.|.|||||+++++-.+.. .+++.. -.|++-...|.. -.-+++++|.-
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~----r~~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA----RAFLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEecccch----HhhcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence 9 888884 3899999999999999999999974421 111111 178776554433 35688999965
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.9e-08 Score=95.84 Aligned_cols=130 Identities=12% Similarity=0.270 Sum_probs=89.8
Q ss_pred CCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCC-CccCeeeec
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
..+|||+|||+|.++..|+.+ +- .+++++|.+ .+++.+.++ |+.. + ..|+ +..++ ++||+|.|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~---~~~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW---FENIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch---hhhCcCCCccEEEEC
Confidence 468999999999999988765 22 257888886 588877765 4322 1 2343 23345 789999995
Q ss_pred c--------------ccccccc-----------cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE--Ee
Q 027609 140 H--------------LFSTIKK-----------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR--MI 192 (221)
Q Consensus 140 ~--------------v~~h~~~-----------d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~--~~ 192 (221)
- +..|.+. ....++.++.++|+|||.+++--.....+.+.+++....|+.. ..
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~ 293 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYK 293 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEe
Confidence 2 1111110 2345678899999999999997666667888888888888743 44
Q ss_pred ecCCCeeEEEEEe
Q 027609 193 YTNDNQGMLCVHK 205 (221)
Q Consensus 193 ~~~~~e~~l~~~K 205 (221)
|-.+.++++++.-
T Consensus 294 D~~g~~R~v~~~~ 306 (506)
T PRK01544 294 DLQGHSRVILISP 306 (506)
T ss_pred cCCCCceEEEecc
Confidence 5567788887753
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-08 Score=91.11 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=64.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcc-------ceeccc-cccCCCCCCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLF-------GLYHDW-CESFNTYPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~-------~~~~d~-~e~f~~yp~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|++++. +|+++|.+ +|++.+.++.-. ....++ +..+..++++||+|.|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 356899999999999999999864 57999987 599988887311 000000 111233468999999999
Q ss_pred cccccccc-HHHHHHHhhhhccCCeEEE
Q 027609 141 LFSTIKKS-LKAVVAEVDRILRPDGNLI 167 (221)
Q Consensus 141 v~~h~~~d-~~~vL~EmdRVLRPGG~~i 167 (221)
+++|++++ ...++..+.++ .+||.++
T Consensus 221 vL~H~p~~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEecCHHHHHHHHHHHHhh-cCCEEEE
Confidence 99999852 33456666654 5666644
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.4e-09 Score=84.48 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=54.7
Q ss_pred cCCCC-CCHHHHHHcCc---------cceeccccccCCCCC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEE
Q 027609 100 PIESP-DTLPIIYERGL---------FGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLIL 168 (221)
Q Consensus 100 ~~d~~-~~l~~a~eRGl---------~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii 168 (221)
++|.+ +|+++|.+|-- +..+..-++.+ +|+ ++||+|.|..+++++. |+..+|.|+.|||||||.+++
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEE
Confidence 56776 59999866521 22222224555 466 8999999999999888 899999999999999999998
Q ss_pred EcCh
Q 027609 169 RDDA 172 (221)
Q Consensus 169 ~d~~ 172 (221)
.|-.
T Consensus 80 ~d~~ 83 (160)
T PLN02232 80 LDFN 83 (160)
T ss_pred EECC
Confidence 8754
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.9e-08 Score=86.76 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=85.1
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----CccceeccccccCCC-CCCccCeeeeccccc-
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGLYHDWCESFNT-YPRTYDLLHADHLFS- 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~~d~~e~f~~-yp~sFDlVh~~~v~~- 143 (221)
..+|||+|||+|.++..|+++.- ..+++++|.+ .+++.+.++ |.--...|+.+.++. +...||+|.++-=+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 45899999999999999876521 1256888885 577776654 221123354332221 236799999873211
Q ss_pred -------------cccc-------c----HHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEeecCC
Q 027609 144 -------------TIKK-------S----LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTND 196 (221)
Q Consensus 144 -------------h~~~-------d----~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~ 196 (221)
|.+. | ...++..+.++|+|||.+++.-.....+.+..+++..+|+..+..+++
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 1100 1 247777888999999999998777778889999999899887776655
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.7e-08 Score=84.38 Aligned_cols=122 Identities=15% Similarity=0.170 Sum_probs=70.7
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCC-CccCeeeeccccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKK 147 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~ 147 (221)
..-.|=|+|||-+.+|+++.+. .|.-.++++.+. + + +.-|. ... |.+ .+.|++.+...+. -.
T Consensus 72 ~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~---------~-V--tacdi-a~v-PL~~~svDv~VfcLSLM--GT 135 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNP---------R-V--TACDI-ANV-PLEDESVDVAVFCLSLM--GT 135 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S---EEEEESS-SST---------T-E--EES-T-TS--S--TT-EEEEEEES-----SS
T ss_pred CCEEEEECCCchHHHHHhcccCceEEEeeccCCCC---------C-E--EEecC-ccC-cCCCCceeEEEEEhhhh--CC
Confidence 3568999999999999887543 233334444321 1 1 22232 122 455 9999999965543 33
Q ss_pred cHHHHHHHhhhhccCCeEEEEEcChhh---HHHHHHHHHhcCCeEEEeecCC-CeeEEEEEecc
Q 027609 148 SLKAVVAEVDRILRPDGNLILRDDAET---IVEVEDLVKSLHWDVRMIYTND-NQGMLCVHKTY 207 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~d~~~~---~~~i~~i~~~l~W~~~~~~~~~-~e~~l~~~K~~ 207 (221)
|..++|.|..|||||||.++|.|...- .+...+.++++..+....|..+ -=.++..+|.-
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 899999999999999999999987654 3455566888999988776433 23444455544
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=84.55 Aligned_cols=135 Identities=13% Similarity=0.097 Sum_probs=82.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc-Cccc------e-eccccccCCCCCCccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER-GLFG------L-YHDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR-Gl~~------~-~~d~~e~f~~yp~sFDlVh~~ 139 (221)
...++|||+|||.|.++..|+.+- ....++.+|.. ++++++.+. ++.+ + ..|..+-+...+.+||+|.++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 357899999999999999997762 12356777774 588888876 2221 1 234222233346789999986
Q ss_pred cccccc--cc--cHHHHHHHhhhhccCCeEEEEE---cChhhHHHHHHHHHhcCCeEEEee-cCCCeeEEEEEe
Q 027609 140 HLFSTI--KK--SLKAVVAEVDRILRPDGNLILR---DDAETIVEVEDLVKSLHWDVRMIY-TNDNQGMLCVHK 205 (221)
Q Consensus 140 ~v~~h~--~~--d~~~vL~EmdRVLRPGG~~ii~---d~~~~~~~i~~i~~~l~W~~~~~~-~~~~e~~l~~~K 205 (221)
.|... +. .-..++.++.++|+|||.+++- .+.....-++.+.....-.+.... .++...+++|.|
T Consensus 144 -~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~ 216 (262)
T PRK04457 144 -GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESHGNVAVFAFK 216 (262)
T ss_pred -CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCCccEEEEEEC
Confidence 34321 11 2369999999999999999983 222222223333333222222222 234567888877
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.4e-08 Score=82.57 Aligned_cols=91 Identities=20% Similarity=0.177 Sum_probs=63.1
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCCC--CccCeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTYP--RTYDLLH 137 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~yp--~sFDlVh 137 (221)
.....+|||+|||+|.+++.|+.... .++.+|.+ ++++.+.++ |+.. .. .|. +..++ ++||+|.
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~ 149 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG---WKGWPAYAPFDRIL 149 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc---ccCCCcCCCcCEEE
Confidence 34468999999999999988877632 46777775 477766654 3322 22 232 22333 7999999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++..+.+++ .++.+.|+|||.+++.-.
T Consensus 150 ~~~~~~~~~-------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAAPEIP-------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCchhhh-------HHHHHhcCCCcEEEEEEc
Confidence 987665543 456789999999998743
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-07 Score=84.24 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=99.6
Q ss_pred chhhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--
Q 027609 45 FTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG-- 117 (221)
Q Consensus 45 f~~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~-- 117 (221)
.+.||..+-..+.. .+. .... +|||+|||+|.+|.+|+.+... .+|+++|.+ +.+++|.+. |+..
T Consensus 92 Pr~dTe~Lve~~l~----~~~--~~~~-~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~ 163 (280)
T COG2890 92 PRPDTELLVEAALA----LLL--QLDK-RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVL 163 (280)
T ss_pred cCCchHHHHHHHHH----hhh--hcCC-cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEE
Confidence 34777777776531 111 1111 8999999999999999988532 368999986 577766554 4422
Q ss_pred -eeccccccCCCCCCccCeeeecc--ccc-----------ccc-----------ccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 118 -LYHDWCESFNTYPRTYDLLHADH--LFS-----------TIK-----------KSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 118 -~~~d~~e~f~~yp~sFDlVh~~~--v~~-----------h~~-----------~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+..|| |...+.+||+|.|+= +=. |-+ +-...++.+..++|+|||++++--..
T Consensus 164 ~~~~dl---f~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 164 VVQSDL---FEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred EEeeec---ccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 12244 445557999998861 100 111 03356788899999999999999887
Q ss_pred hhHHHHHHHHHhcCC-eEE--EeecCCCeeEEEEEe
Q 027609 173 ETIVEVEDLVKSLHW-DVR--MIYTNDNQGMLCVHK 205 (221)
Q Consensus 173 ~~~~~i~~i~~~l~W-~~~--~~~~~~~e~~l~~~K 205 (221)
...+.+++++....+ ... ..+-.+.++++++++
T Consensus 241 ~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 241 TQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred CcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEEe
Confidence 778899999999984 322 223345677777665
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.5e-08 Score=85.90 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=88.3
Q ss_pred hhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccc--eeccccccCCCCCCccCeee
Q 027609 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 61 ~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~--~~~d~~e~f~~yp~sFDlVh 137 (221)
.++|.+....-+-|||+|||+|--+..|.+.| .. .+++|.| .||++|.+|-+.| ++.|..+.+++=|+|||-+.
T Consensus 41 LELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~--wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 41 LELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQ--WIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred HHHhhCCCCCCcEEEEeccCCCcchheeccCC-ce--EEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEE
Confidence 34555666678899999999999999998887 32 5789987 5999999875654 56688888863359999987
Q ss_pred eccccc---c----ccccHHH----HHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCe
Q 027609 138 ADHLFS---T----IKKSLKA----VVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWD 188 (221)
Q Consensus 138 ~~~v~~---h----~~~d~~~----vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~ 188 (221)
+-..++ | ++ +|.. ++.-...+|++|+..++.=-.+..+.++-|...-.|.
T Consensus 118 SISAvQWLcnA~~s~~-~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~a 178 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLH-VPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKA 178 (270)
T ss_pred EeeeeeeecccCcccc-ChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhh
Confidence 654443 1 11 4444 5667899999999999994444444444444444443
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=6e-08 Score=86.96 Aligned_cols=144 Identities=16% Similarity=0.164 Sum_probs=85.5
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc------Cc-----cce-ec
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER------GL-----FGL-YH 120 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR------Gl-----~~~-~~ 120 (221)
.|.++|. +.....++|||+|||.|+++..++++ ++. +|+.+|.. ++++++.+. |. +.+ ..
T Consensus 61 ~Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~ 138 (283)
T PRK00811 61 IYHEMMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIG 138 (283)
T ss_pred hHHHHhhhHHHhhCCCCCEEEEEecCchHHHHHHHcCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEEC
Confidence 3555553 23345789999999999999999887 443 56677764 488877764 11 011 22
Q ss_pred cccccCCCC-CCccCeeeeccccccccc----cHHHHHHHhhhhccCCeEEEEEcChh-----hHHHHHHHHHhcCCeEE
Q 027609 121 DWCESFNTY-PRTYDLLHADHLFSTIKK----SLKAVVAEVDRILRPDGNLILRDDAE-----TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 121 d~~e~f~~y-p~sFDlVh~~~v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d~~~-----~~~~i~~i~~~l~W~~~ 190 (221)
|. ..+... +++||+|.+... .++.. --..++.++.|+|+|||.+++.-..+ ....+.+-+++.--.+.
T Consensus 139 Da-~~~l~~~~~~yDvIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~ 216 (283)
T PRK00811 139 DG-IKFVAETENSFDVIIVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVR 216 (283)
T ss_pred ch-HHHHhhCCCcccEEEECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEE
Confidence 32 112222 389999998643 22211 12677899999999999999863322 23333333444333333
Q ss_pred Eee------cCCCeeEEEEEec
Q 027609 191 MIY------TNDNQGMLCVHKT 206 (221)
Q Consensus 191 ~~~------~~~~e~~l~~~K~ 206 (221)
... ..+.-.+++|.|.
T Consensus 217 ~~~~~vp~~~~~~w~f~~as~~ 238 (283)
T PRK00811 217 PYQAAIPTYPSGLWSFTFASKN 238 (283)
T ss_pred EEEeECCcccCchheeEEeecC
Confidence 221 1223467888884
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.3e-08 Score=79.13 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=74.9
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceecc---------ccccCCCCCCccCee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHD---------WCESFNTYPRTYDLL 136 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d---------~~e~f~~yp~sFDlV 136 (221)
+..+...+|||+||++|||+..+.+++.....++++|...+-+. ++...+..| ..+.+..-...||+|
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv 95 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL---QNVSFIQGDITNPENIKDIRKLLPESGEKFDLV 95 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc---cceeeeecccchhhHHHhhhhhccccccCccee
Confidence 45657899999999999999999999733335666665432111 111111111 111111011699999
Q ss_pred eeccccc--------cccc--cHHHHHHHhhhhccCCeEEEEE-----cChhhHHHHHHHHHhcCCeEEE-eecCCCeeE
Q 027609 137 HADHLFS--------TIKK--SLKAVVAEVDRILRPDGNLILR-----DDAETIVEVEDLVKSLHWDVRM-IYTNDNQGM 200 (221)
Q Consensus 137 h~~~v~~--------h~~~--d~~~vL~EmdRVLRPGG~~ii~-----d~~~~~~~i~~i~~~l~W~~~~-~~~~~~e~~ 200 (221)
.|..... ++.. --...|.=+-..|||||.+|+. +.+.++..++..+..+++-.-. .-.++.|..
T Consensus 96 ~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Y 175 (181)
T PF01728_consen 96 LSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSESSEEY 175 (181)
T ss_dssp EE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTCBEEE
T ss_pred ccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCccEEE
Confidence 9997332 2221 1223333344679999998886 2345566666666665443211 123468999
Q ss_pred EEEEe
Q 027609 201 LCVHK 205 (221)
Q Consensus 201 l~~~K 205 (221)
|||++
T Consensus 176 lv~~~ 180 (181)
T PF01728_consen 176 LVCRG 180 (181)
T ss_dssp EESEE
T ss_pred EEEcC
Confidence 99875
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-08 Score=78.00 Aligned_cols=97 Identities=18% Similarity=0.289 Sum_probs=65.2
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc---ccee-ccccccCCCCC-CccCeeeeccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL---FGLY-HDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl---~~~~-~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
.+|||+|||+|.++.++++++ ..+++++|.. ..++.++.+ ++ +.++ .|..+....++ +.||+|.++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 479999999999999998887 2367888875 466666554 12 1122 23322111355 99999999866
Q ss_pred ccccc-------ccHHHHHHHhhhhccCCeEEEEEc
Q 027609 142 FSTIK-------KSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 142 ~~h~~-------~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+.... .....++.++.|+|||||.+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 65321 134688999999999999998754
|
... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.5e-08 Score=90.07 Aligned_cols=116 Identities=18% Similarity=0.227 Sum_probs=74.2
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-c-eeccccccCCC-CC-CccCeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-G-LYHDWCESFNT-YP-RTYDLLH 137 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~-~~~d~~e~f~~-yp-~sFDlVh 137 (221)
......+|||+|||+|+++..++++.-- ..|+.+|.+ .+++.+.++ |+. . ..+|..+ +.. ++ ++||.|.
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~-~~~~~~~~~fD~Vl 318 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARD-PAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCccc-chhhcccCCCCEEE
Confidence 3445679999999999999999886321 257888886 477766554 331 1 2234322 222 44 7899999
Q ss_pred ecccc------cc-----cccc----------HHHHHHHhhhhccCCeEEEEEcC----hhhHHHHHHHHHh
Q 027609 138 ADHLF------ST-----IKKS----------LKAVVAEVDRILRPDGNLILRDD----AETIVEVEDLVKS 184 (221)
Q Consensus 138 ~~~v~------~h-----~~~d----------~~~vL~EmdRVLRPGG~~ii~d~----~~~~~~i~~i~~~ 184 (221)
++--+ .+ |..+ ...+|.++.++|||||.++++++ .+..+.++..+.+
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 44211 11 1111 24689999999999999999986 3334555555544
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.5e-08 Score=89.96 Aligned_cols=115 Identities=16% Similarity=0.237 Sum_probs=72.8
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccccee--ccccccC--CCC-C-CccCe
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGLY--HDWCESF--NTY-P-RTYDL 135 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~--~d~~e~f--~~y-p-~sFDl 135 (221)
......+|||+|||+|+++.++++.-- ...++++|.+ ++++.+.++ |+...+ .+ +..+ ..+ + ++||.
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~-~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKD-GDGRGPSQWAENEQFDR 312 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-cccccccccccccccCE
Confidence 344568999999999999999887521 1257888886 477655544 442111 21 1111 221 4 88999
Q ss_pred eeec------cccccccc---------------cHHHHHHHhhhhccCCeEEEEEcChh----hHHHHHHHHH
Q 027609 136 LHAD------HLFSTIKK---------------SLKAVVAEVDRILRPDGNLILRDDAE----TIVEVEDLVK 183 (221)
Q Consensus 136 Vh~~------~v~~h~~~---------------d~~~vL~EmdRVLRPGG~~ii~d~~~----~~~~i~~i~~ 183 (221)
|.+. .++.+-++ ....+|.++.|+|||||.++++++.- .-+.|+.++.
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 9853 33433221 13679999999999999999997632 3344555544
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=86.29 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=75.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCC-CccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
....+|||.|||+|+++..++..+. ++.++|.+ .|++.+..+ |+.+ + ..|. ..+ +++ ++||+|.|+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~-~~l-~~~~~~~D~Iv~d 255 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA-TKL-PLSSESVDAIATD 255 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch-hcC-CcccCCCCEEEEC
Confidence 3467899999999999887766654 46888886 477755543 4433 2 2332 223 344 899999996
Q ss_pred cccc-------c-ccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCC
Q 027609 140 HLFS-------T-IKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW 187 (221)
Q Consensus 140 ~v~~-------h-~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W 187 (221)
-=+. + ..+....+|.|+.|+|||||++++..+... .++++++.-.|
T Consensus 256 PPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~ 309 (329)
T TIGR01177 256 PPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR 309 (329)
T ss_pred CCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc
Confidence 2221 1 111357899999999999999988765532 45566777777
|
This family is found exclusively in the Archaea. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.8e-08 Score=90.53 Aligned_cols=121 Identities=18% Similarity=0.238 Sum_probs=74.6
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCCCccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp~sFDlVh~~~ 140 (221)
.+..+|||+|||+|+++..++++--....++++|.+ ++++.+.++ |+.. + ..|..+...+++++||+|.++-
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 446789999999999999988751011257888885 466655543 4432 2 2343221223558999998652
Q ss_pred ------ccccccc---------------cHHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHhc-CCeE
Q 027609 141 ------LFSTIKK---------------SLKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKSL-HWDV 189 (221)
Q Consensus 141 ------v~~h~~~---------------d~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~l-~W~~ 189 (221)
.+.+-++ ....+|.++.|+|||||.++.+++. +....++.+++.- .++.
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 1111110 1245899999999999999988764 2334555555543 2443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-07 Score=90.26 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=71.9
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCC-CccCeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYP-RTYDLLH 137 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp-~sFDlVh 137 (221)
......+|||+|||+|+++..+++.---...|+++|.+ ++++.+.++ |+.. + .+|.. .+ .+ ++||+|.
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~-~~--~~~~~fD~Vl 323 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDAR-SF--SPEEQPDAIL 323 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccc-cc--ccCCCCCEEE
Confidence 34456889999999999888777641011257888886 477655543 4422 1 23422 12 24 7899998
Q ss_pred ec----c--cccc-----cc----------ccHHHHHHHhhhhccCCeEEEEEcChh----hHHHHHHHHHh
Q 027609 138 AD----H--LFST-----IK----------KSLKAVVAEVDRILRPDGNLILRDDAE----TIVEVEDLVKS 184 (221)
Q Consensus 138 ~~----~--v~~h-----~~----------~d~~~vL~EmdRVLRPGG~~ii~d~~~----~~~~i~~i~~~ 184 (221)
+. . .+.+ |. .....+|.++.|+|||||.++++++.- .-..++.++++
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 53 1 1111 11 123468999999999999999998643 24455666654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-07 Score=95.31 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=82.5
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-c---e-eccccccCCCCCCccCeeeec-
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-G---L-YHDWCESFNTYPRTYDLLHAD- 139 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~---~-~~d~~e~f~~yp~sFDlVh~~- 139 (221)
.++|||+|||+|+|+.+++..|+. .|+.+|.+ .+++.+.+. |+. . + ..|..+.+..+.++||+|.++
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 579999999999999999988764 47889986 477776664 332 1 1 224222111235799999985
Q ss_pred ----------cccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEe
Q 027609 140 ----------HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 140 ----------~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~ 192 (221)
.++.... +...++....|+|+|||.+++..+........+.+..-++++.+.
T Consensus 617 P~f~~~~~~~~~~~~~~-~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQR-DHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCCccchhhhHHH-HHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 1222122 567788889999999999999877665555566677777877654
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.3e-07 Score=82.38 Aligned_cols=144 Identities=14% Similarity=0.105 Sum_probs=85.0
Q ss_pred hhhccc----CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcc-----------cee-ccc
Q 027609 60 YLNGMG----INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLF-----------GLY-HDW 122 (221)
Q Consensus 60 Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~-----------~~~-~d~ 122 (221)
|.++|. +...+.++||++|||.|+++..+++++. +.+++.+|.+ ++++.+.+. +. .+. .|.
T Consensus 58 y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~-~~~~~~~~~~~~v~i~~~D~ 135 (270)
T TIGR00417 58 YHEMIAHVPLFTHPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKF-LPSLAGSYDDPRVDLQIDDG 135 (270)
T ss_pred HHHHhhhhHhhcCCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHH-hHhhcccccCCceEEEECch
Confidence 555553 2344567999999999999999988751 2356667765 477777664 21 111 121
Q ss_pred cccCCCCCCccCeeeeccccccccc-c--HHHHHHHhhhhccCCeEEEEEcChhh-----HHHHHHHHHhcCCeEEEee-
Q 027609 123 CESFNTYPRTYDLLHADHLFSTIKK-S--LKAVVAEVDRILRPDGNLILRDDAET-----IVEVEDLVKSLHWDVRMIY- 193 (221)
Q Consensus 123 ~e~f~~yp~sFDlVh~~~v~~h~~~-d--~~~vL~EmdRVLRPGG~~ii~d~~~~-----~~~i~~i~~~l~W~~~~~~- 193 (221)
.+-+...+++||+|.++.....-.. + -..++..+.|+|+|||.+++....+. ...+.+.+++.--.+....
T Consensus 136 ~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~ 215 (270)
T TIGR00417 136 FKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTA 215 (270)
T ss_pred HHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 1111112589999998754221111 1 35788999999999999998744332 3333333444322332221
Q ss_pred -----cCCCeeEEEEEe
Q 027609 194 -----TNDNQGMLCVHK 205 (221)
Q Consensus 194 -----~~~~e~~l~~~K 205 (221)
..+.-.+++|.|
T Consensus 216 ~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 216 NIPTYPSGLWTFTIGSK 232 (270)
T ss_pred EcCccccchhEEEEEEC
Confidence 123457889988
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-07 Score=88.61 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=68.4
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCC-CCccCeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTY-PRTYDLLH 137 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~y-p~sFDlVh 137 (221)
+.....+|||+|||+|+.+.++++.---...|+.+|.+ ++++.+.++ |+.. + ..|.. .++.+ +++||.|.
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD~Vl 312 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFDRIL 312 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCCEEE
Confidence 34456789999999999998887751011257888886 477766544 4422 2 23432 24334 38899998
Q ss_pred eccc---cccccc------------------cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 138 ADHL---FSTIKK------------------SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 138 ~~~v---~~h~~~------------------d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|+-- +..+.. ....+|.+..+.|||||.++++++.
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 6421 111111 1256789999999999999999774
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-07 Score=86.67 Aligned_cols=137 Identities=15% Similarity=0.229 Sum_probs=82.5
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCC---CC-CCccC
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFN---TY-PRTYD 134 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~---~y-p~sFD 134 (221)
......+|||+|||+|+.+.+|++.--....|+.+|.+ .+++.+.++ |+.. ++ .|. ..++ ++ +++||
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~-~~~~~~~~~~~~~fD 327 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS-RNLLELKPQWRGYFD 327 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh-hhcccccccccccCC
Confidence 34446789999999999999887751111246888875 467655443 4422 22 232 2222 12 37999
Q ss_pred eeeec------cccccccc---------------cHHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHhc-CCe
Q 027609 135 LLHAD------HLFSTIKK---------------SLKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKSL-HWD 188 (221)
Q Consensus 135 lVh~~------~v~~h~~~---------------d~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~l-~W~ 188 (221)
.|.+. .++.+-++ ....+|.++.|+|||||.++.+++. +....++.++++- .|+
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 99864 23332221 1467899999999999999999753 3345566665543 354
Q ss_pred EEE------eecCCCeeEEEEE
Q 027609 189 VRM------IYTNDNQGMLCVH 204 (221)
Q Consensus 189 ~~~------~~~~~~e~~l~~~ 204 (221)
... ++..+.+.+++|+
T Consensus 408 ~~~~~~~~~P~~~~~dGfF~a~ 429 (434)
T PRK14901 408 LEPPKQKIWPHRQDGDGFFMAV 429 (434)
T ss_pred ecCCCCccCCCCCCCCcEEEEE
Confidence 321 1112356777764
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-07 Score=80.56 Aligned_cols=113 Identities=14% Similarity=0.250 Sum_probs=80.7
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHH----HHHHcCccc----eeccccccCCCC-CCccCeeeecccc
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLP----IIYERGLFG----LYHDWCESFNTY-PRTYDLLHADHLF 142 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~----~a~eRGl~~----~~~d~~e~f~~y-p~sFDlVh~~~v~ 142 (221)
+|||+|||.|.+...|++.+..- .++++|.++ .++ +|.++|+.. .+.|.-.+ .| +..||+||--..+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFLSGQFDLVLDKGTL 146 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cccccceeEEeecCce
Confidence 89999999999999999998542 478999863 444 666777765 22343221 33 5899999855444
Q ss_pred c---cccc----cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCe
Q 027609 143 S---TIKK----SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWD 188 (221)
Q Consensus 143 ~---h~~~----d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~ 188 (221)
. .-++ .+...+--+.++|+|||+|+|..++-..+++.+.+..-...
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~ 199 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFE 199 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeE
Confidence 2 1111 34567778899999999999999998888887776655443
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-07 Score=84.66 Aligned_cols=110 Identities=20% Similarity=0.185 Sum_probs=68.5
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc------Cc----cce-eccc
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER------GL----FGL-YHDW 122 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR------Gl----~~~-~~d~ 122 (221)
.|.++|. ....+.++|||+|||.|+++.++++++ .+.+++-+|.. ++++++++. ++ +.+ ..|-
T Consensus 76 ~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da 154 (308)
T PLN02366 76 AYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDG 154 (308)
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChH
Confidence 4666654 223458899999999999999999874 22345555554 367777664 11 111 2231
Q ss_pred cccCCCCC-CccCeeeeccccccccc---cHHHHHHHhhhhccCCeEEEEE
Q 027609 123 CESFNTYP-RTYDLLHADHLFSTIKK---SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 123 ~e~f~~yp-~sFDlVh~~~v~~h~~~---d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
-+-+...+ +.||+|.+.....+-+. --..++..+.|.|+|||.++..
T Consensus 155 ~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 155 VEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred HHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 11112244 78999998643221111 1246889999999999999874
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-07 Score=79.65 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=73.6
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCC-----CCHHHHHHcCccce--ec-cccccCCC-CC-CccCeeeecccc
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-----DTLPIIYERGLFGL--YH-DWCESFNT-YP-RTYDLLHADHLF 142 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-----~~l~~a~eRGl~~~--~~-d~~e~f~~-yp-~sFDlVh~~~v~ 142 (221)
.+||+|||.|.|..+++.+.-. .|+++++.. ..+..+..+|+.++ ++ |.-..+.. ++ +++|-|+...--
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 7999999999999999887432 277888874 24556666677553 22 21111111 44 999998875221
Q ss_pred c-----cccc--cHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhc--CCeE
Q 027609 143 S-----TIKK--SLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSL--HWDV 189 (221)
Q Consensus 143 ~-----h~~~--d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l--~W~~ 189 (221)
- |... --..+|.++.|+|+|||.+.+.++. ++.+.+...+... +++.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~ 155 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFEN 155 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEE
Confidence 1 2111 2247899999999999999887554 4567777776664 5554
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-07 Score=64.70 Aligned_cols=95 Identities=23% Similarity=0.308 Sum_probs=62.0
Q ss_pred EEeecCcchHH--HHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c---cceeccccccCCCCCC--ccCeeeeccc
Q 027609 74 VMDMRAVYGGF--AAALKDLKVWVMNVVPIESP-DTLPIIYERG----L---FGLYHDWCESFNTYPR--TYDLLHADHL 141 (221)
Q Consensus 74 VLD~GcG~G~f--aa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l---~~~~~d~~e~f~~yp~--sFDlVh~~~v 141 (221)
++|+|||+|.. .+.+...+. .++++|.+ .++..+..+. . .....+......+++. +||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGA---YVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCc---eEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 99999999994 444444332 23446665 3555544332 1 1123332221234543 89999 7777
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
..++. ++..++.++.|+|+|+|.+++.+...
T Consensus 128 ~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 128 VLHLL-PPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ehhcC-CHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 76666 48999999999999999999997653
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-07 Score=82.08 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=65.4
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCCCCccCeeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTYPRTYDLLHA 138 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~yp~sFDlVh~ 138 (221)
......+|||+|||+|+++..|++.--....|+.+|.+ .+++.+.++ |+.. ++ .| +..++.....||.|.+
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D-~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFD-GRVFGAAVPKFDAILL 146 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCC-HHHhhhhccCCCEEEE
Confidence 33446789999999999998887641111146788875 466655443 4422 22 23 2223322367999986
Q ss_pred cc------ccccc---------------cccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 139 DH------LFSTI---------------KKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 139 ~~------v~~h~---------------~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+- ++.+- ......+|.++.+.|||||+++.+++.
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 42 11110 001245999999999999999999764
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=79.33 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=76.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCC-CccCeeeecccccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKS 148 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d 148 (221)
..-.|-|+|||-+-+|..-. ..|..+++++++.. + +.-|.. . -|.+ +|.|++.+. ++..-.|
T Consensus 180 ~~~vIaD~GCGEakiA~~~~-~kV~SfDL~a~~~~----------V--~~cDm~-~-vPl~d~svDvaV~C--LSLMgtn 242 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSER-HKVHSFDLVAVNER----------V--IACDMR-N-VPLEDESVDVAVFC--LSLMGTN 242 (325)
T ss_pred CceEEEecccchhhhhhccc-cceeeeeeecCCCc----------e--eecccc-C-CcCccCcccEEEee--Hhhhccc
Confidence 35569999999999886322 25777777776532 1 111211 1 2445 999999985 4433448
Q ss_pred HHHHHHHhhhhccCCeEEEEEcChhh---HHHHHHHHHhcCCeEEEeecC
Q 027609 149 LKAVVAEVDRILRPDGNLILRDDAET---IVEVEDLVKSLHWDVRMIYTN 195 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii~d~~~~---~~~i~~i~~~l~W~~~~~~~~ 195 (221)
..+++.|.+|||||||.++|.+...- +....+-+.+|..++...|-.
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 99999999999999999999986543 344566688899998766533
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-06 Score=78.62 Aligned_cols=129 Identities=16% Similarity=0.275 Sum_probs=86.0
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCCCCCccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
.-+|||+|||+|-+++.|+++.- ...++-+|.+ ..++.+++. ++.+ ++++ ..+++-...||+|.|+==||
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s--~~~~~v~~kfd~IisNPPfh 235 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWAS--NLYEPVEGKFDLIISNPPFH 235 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe--cccccccccccEEEeCCCcc
Confidence 33999999999999999999853 2356777775 366655443 3444 3332 12333336999999987676
Q ss_pred cccc----cHHHHHHHhhhhccCCeEEEEEc--ChhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEec
Q 027609 144 TIKK----SLKAVVAEVDRILRPDGNLILRD--DAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT 206 (221)
Q Consensus 144 h~~~----d~~~vL~EmdRVLRPGG~~ii~d--~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K~ 206 (221)
.=.. --+.++.+..+-|++||-+.|-- ..++-..|++++. ++...-.+++-+||-++|.
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~~gf~Vl~a~k~ 300 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKNGGFKVLRAKKA 300 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeCCCEEEEEEecC
Confidence 2221 23578999999999999887663 3445566666655 4555556667788877763
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.5e-07 Score=82.76 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=89.4
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc--------C-c--cc---ee
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER--------G-L--FG---LY 119 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR--------G-l--~~---~~ 119 (221)
.|.+.|- ....+.++||++|||.|+.++.+++++ .+.+++.+|.. +++++|.+. | + +. .+
T Consensus 135 iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi 213 (374)
T PRK01581 135 IYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHV 213 (374)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEE
Confidence 3555443 234557899999999999999998875 22356777775 589988862 1 1 11 12
Q ss_pred ccccccCCCCCCccCeeeecccccccc----c-cHHHHHHHhhhhccCCeEEEEEcChhh-----HHHHHHHHHhcCCeE
Q 027609 120 HDWCESFNTYPRTYDLLHADHLFSTIK----K-SLKAVVAEVDRILRPDGNLILRDDAET-----IVEVEDLVKSLHWDV 189 (221)
Q Consensus 120 ~d~~e~f~~yp~sFDlVh~~~v~~h~~----~-d~~~vL~EmdRVLRPGG~~ii~d~~~~-----~~~i~~i~~~l~W~~ 189 (221)
.|..+-+..-++.||+|.++. ..... . --..++..+.|.|+|||.+++....+. ...+.+.+++....+
T Consensus 214 ~Da~~fL~~~~~~YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v 292 (374)
T PRK01581 214 CDAKEFLSSPSSLYDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTV 292 (374)
T ss_pred CcHHHHHHhcCCCccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCce
Confidence 332221112247899999983 21110 0 125688999999999999998855332 233444455555555
Q ss_pred EEeec-----CCCeeEEEEEeccc
Q 027609 190 RMIYT-----NDNQGMLCVHKTYW 208 (221)
Q Consensus 190 ~~~~~-----~~~e~~l~~~K~~w 208 (221)
..+.. .+.=.+.+|.|.-.
T Consensus 293 ~~y~t~vPsyg~~WgF~~as~~~~ 316 (374)
T PRK01581 293 KSYHTIVPSFGTDWGFHIAANSAY 316 (374)
T ss_pred EEEEEecCCCCCceEEEEEeCCcc
Confidence 43321 12256888877544
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.9e-07 Score=80.53 Aligned_cols=110 Identities=13% Similarity=0.209 Sum_probs=77.3
Q ss_pred hcccCCCCCCCeEEeecCcchHHHHHHhhCCC-eEEEeccCCCC-CCHHHHHHcCc------cceeccccccCC--C-CC
Q 027609 62 NGMGINWSFVRNVMDMRAVYGGFAAALKDLKV-WVMNVVPIESP-DTLPIIYERGL------FGLYHDWCESFN--T-YP 130 (221)
Q Consensus 62 ~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v-~vmnv~~~d~~-~~l~~a~eRGl------~~~~~d~~e~f~--~-yp 130 (221)
.++.+....-..||.+|||.|...--|++-.. .-+.+.+-|-+ +.+++..++-- -..++|++.+=. + .+
T Consensus 63 el~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~ 142 (264)
T KOG2361|consen 63 ELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEE 142 (264)
T ss_pred HhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCc
Confidence 33333333333899999999988777766522 12345666654 57776666532 235566655422 2 34
Q ss_pred CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 131 RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+++|+|.+-.+|+-++. .+..++..+.|+|||||.+++||=
T Consensus 143 ~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 143 GSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred CccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 99999999999987765 889999999999999999999973
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.4e-07 Score=78.87 Aligned_cols=123 Identities=16% Similarity=0.196 Sum_probs=77.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc-----Cccc-eeccccccCCCCCCccCeeeecccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER-----GLFG-LYHDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR-----Gl~~-~~~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
....++||.|||-|..+..|+-.-...+.++... +..++.|.+. +-++ .+.---+.|.|-+..||+|+|.=|+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~-~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV-EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES--HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccC-HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4688999999999999998866544443444322 2366777632 2222 2221112233334799999999999
Q ss_pred ccccc-cHHHHHHHhhhhccCCeEEEEEcChh----------------hHHHHHHHHHhcCCeEEEe
Q 027609 143 STIKK-SLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 143 ~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~~----------------~~~~i~~i~~~l~W~~~~~ 192 (221)
.|+++ |...+|.-...-|+|+|++|+.|... -.+.+.+|+++-..++...
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 99998 99999999999999999999996421 1466777777777776543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-06 Score=75.63 Aligned_cols=121 Identities=17% Similarity=0.308 Sum_probs=84.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHc----Cc---cceec-cccccCCCCC-CccCeeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYER----GL---FGLYH-DWCESFNTYP-RTYDLLHA 138 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eR----Gl---~~~~~-d~~e~f~~yp-~sFDlVh~ 138 (221)
....+|||+|||.|..+-.|++|--. ..+++++..+ +.+.|.+. ++ +.+++ |.-+-....+ .+||+|.|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34889999999999999999998211 2456666643 44444332 12 22343 2222111234 67999998
Q ss_pred ccccc---------------ccc-c-cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE
Q 027609 139 DHLFS---------------TIK-K-SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 139 ~~v~~---------------h~~-~-d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
+==+- |+. . +.++++.=..++|||||++.+--..+.+.++-.++++++|...
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 72220 111 1 7889999999999999999999999999999999999999875
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-06 Score=79.02 Aligned_cols=92 Identities=21% Similarity=0.350 Sum_probs=72.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccce-eccccccCCCCCCccCeeeeccccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGL-YHDWCESFNTYPRTYDLLHADHLFSTIKK 147 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~-~~d~~e~f~~yp~sFDlVh~~~v~~h~~~ 147 (221)
...++||+|||-|+.++.|+.. .-+|..++.| .|...-.+||.--. ..+|.+ -+..||+|-|-.++..-.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~----~~~~fDvIscLNvLDRc~- 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQ----TDFKFDVISCLNVLDRCD- 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhc----cCCceEEEeehhhhhccC-
Confidence 5778999999999999999663 1145666766 48888889987311 223432 147899999999998666
Q ss_pred cHHHHHHHhhhhccCCeEEEEE
Q 027609 148 SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+|..+|.+|++.|+|+|.+++.
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEE
Confidence 8999999999999999999998
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-06 Score=82.00 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=76.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC-c----------cc--ee-ccccccCCCCCCcc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG-L----------FG--LY-HDWCESFNTYPRTY 133 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG-l----------~~--~~-~d~~e~f~~yp~sF 133 (221)
.+.++|||+|||.|..+..+++++. +-.++.+|.+ ++++.+++.- + +. ++ .|--+-+...+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4578999999999999999988752 1256777764 5888887731 1 11 12 23111111235899
Q ss_pred Ceeeeccccccccc----cHHHHHHHhhhhccCCeEEEEEcC-----hhhHHHHHHHHHhcCCeEE
Q 027609 134 DLLHADHLFSTIKK----SLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 134 DlVh~~~v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d~-----~~~~~~i~~i~~~l~W~~~ 190 (221)
|+|.++.....-+. --..++.++.|.|||||.+++... .+....+.+.+++.+..+.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 99999732211110 124688999999999999999643 2234455666666656443
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-06 Score=73.88 Aligned_cols=126 Identities=14% Similarity=0.205 Sum_probs=75.5
Q ss_pred chhhhhhhHHHHHhhhhhccc-CCCCCCCeEEeecCcchH----HHHHHhh--C--CCeEEEeccCCCC-CCHHHHHHcC
Q 027609 45 FTADYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGG----FAAALKD--L--KVWVMNVVPIESP-DTLPIIYERG 114 (221)
Q Consensus 45 f~~d~~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G~----faa~L~~--~--~v~vmnv~~~d~~-~~l~~a~eRG 114 (221)
|=.|...|.......-...+. ...+..-+|..+||++|- +|..|.+ . .-|-+.+.++|.+ ..|+.|. +|
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar-~G 83 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR-AG 83 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH-HT
T ss_pred ccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH-hC
Confidence 567778888877652224443 334467889999999994 6666666 1 2345688999986 4777653 33
Q ss_pred c---------cc---------------------------eeccccccCCCCCCccCeeeeccccccccc-cHHHHHHHhh
Q 027609 115 L---------FG---------------------------LYHDWCESFNTYPRTYDLLHADHLFSTIKK-SLKAVVAEVD 157 (221)
Q Consensus 115 l---------~~---------------------------~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~-d~~~vL~Emd 157 (221)
. +. ..||+.+ ..+.++.||+|.|..|+.++.. .-..++.-+.
T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~ 162 (196)
T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLH 162 (196)
T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HHHHHHHHHHHG
T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHHHHHHHHHHHH
Confidence 2 00 2356555 2223499999999999998876 6689999999
Q ss_pred hhccCCeEEEEEcCh
Q 027609 158 RILRPDGNLILRDDA 172 (221)
Q Consensus 158 RVLRPGG~~ii~d~~ 172 (221)
+.|+|||++++....
T Consensus 163 ~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 163 RSLKPGGYLFLGHSE 177 (196)
T ss_dssp GGEEEEEEEEE-TT-
T ss_pred HHcCCCCEEEEecCc
Confidence 999999999999654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-06 Score=80.62 Aligned_cols=93 Identities=16% Similarity=0.051 Sum_probs=59.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccc---eeccccccCCCCCCccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFG---LYHDWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~---~~~d~~e~f~~yp~sFDlVh~~~v 141 (221)
...+|||+|||+|.+++.|++.....-.|+.+|.+ ++++.+.+ .|+.. ...|..+. .+....||+|.+...
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~-~~~~~~fD~Ii~~~g 158 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG-VPEFAPYDVIFVTVG 158 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc-ccccCCccEEEECCc
Confidence 45789999999999999998752111135777775 57776665 34422 12232221 111278999998754
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+.+.+ ..+.|+|||||.+++-.
T Consensus 159 ~~~ip-------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VDEVP-------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hHHhH-------HHHHHhcCCCCEEEEEe
Confidence 43332 34568999999998854
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.2e-07 Score=82.95 Aligned_cols=92 Identities=22% Similarity=0.334 Sum_probs=65.4
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHH---------HHHcCccceeccccccCCCCC-CccCeeeeccc
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPI---------IYERGLFGLYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~---------a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
.++|+|||+|+...++..-.. -++.+++... .+.. +.++-.+ +.+|. - ..+|+ ++||.+.+..+
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~-~~~~~-~-~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNF-VVADF-G-KMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcce-ehhhh-h-cCCCCccccCcEEEEee
Confidence 789999999999888765431 1345555431 1111 1111112 33332 1 34677 99999999999
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.+|.+ ++..++.|+.|||+|||+++.-+
T Consensus 188 ~~~~~-~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 188 VCHAP-DLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred cccCC-cHHHHHHHHhcccCCCceEEeHH
Confidence 99999 89999999999999999999875
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-06 Score=77.62 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=66.8
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccc--e-eccccccCCCC--CCccCeeeecccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFG--L-YHDWCESFNTY--PRTYDLLHADHLFST 144 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~--~-~~d~~e~f~~y--p~sFDlVh~~~v~~h 144 (221)
..+|||+|||+|.++..++.+.. ..+++++|.+ .+++.+.++ +.. . ..| +..+ +++||+|.++--|.|
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n-~~~v~~v~~D----~~e~~~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRL-LPEAEWITSD----VFEFESNEKFDVVISNPPFGK 138 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh-CcCCEEEECc----hhhhcccCCCcEEEEcCCccc
Confidence 46899999999999988877521 1257888886 599988876 322 2 223 2223 378999999988877
Q ss_pred ccc----c---------------HHHHHHHhhhhccCCeEEEEE
Q 027609 145 IKK----S---------------LKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 145 ~~~----d---------------~~~vL~EmdRVLRPGG~~ii~ 169 (221)
... + ....+....++|+|+|.+++.
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 432 1 256778889999999988665
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-06 Score=79.88 Aligned_cols=97 Identities=21% Similarity=0.323 Sum_probs=62.8
Q ss_pred CCCeEEeecCcchH-HHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC---------------ccc--eeccccccCCC--
Q 027609 70 FVRNVMDMRAVYGG-FAAALKDLKVWVMNVVPIESP-DTLPIIYERG---------------LFG--LYHDWCESFNT-- 128 (221)
Q Consensus 70 ~~r~VLD~GcG~G~-faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG---------------l~~--~~~d~~e~f~~-- 128 (221)
...+|||||||-|| +..+.. .++. .++++|.+ .-++-|.+|= ... ...| .|..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~-~~i~--~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D---~f~~~l 135 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQK-AKIK--HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAAD---CFSESL 135 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHH-TT-S--EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEEST---TCCSHH
T ss_pred CCCeEEEecCCCchhHHHHHh-cCCC--EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccc---cccchh
Confidence 68899999999998 444443 3443 57889986 4777777772 111 1112 1211
Q ss_pred ---CC---CccCeeeeccccccccc---cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 129 ---YP---RTYDLLHADHLFSTIKK---SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 129 ---yp---~sFDlVh~~~v~~h~~~---d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|+ ..||+|-|..+||+-=+ ....+|.-+..-|||||+||.+..+
T Consensus 136 ~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 136 REKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp HCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred hhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 33 59999999988885432 5566899999999999999999766
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.2e-06 Score=72.09 Aligned_cols=131 Identities=11% Similarity=0.103 Sum_probs=76.7
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCC----C-CCcc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNT----Y-PRTY 133 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~----y-p~sF 133 (221)
...++|||+|||+|.-+.+|+.. +.. ..++.+|.+ +++++|.+. |+-. + ..|..+.++. . ..+|
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 34789999999999755555432 111 146777765 466655443 4422 2 2333332221 1 2689
Q ss_pred CeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh-------------h----hHHHHHHHHH----hcCCeEEEe
Q 027609 134 DLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-------------E----TIVEVEDLVK----SLHWDVRMI 192 (221)
Q Consensus 134 DlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-------------~----~~~~i~~i~~----~l~W~~~~~ 192 (221)
|+|.+..- ..+...++.++.|.|||||.+++.+.. + ....|+++.+ .=++.+.+.
T Consensus 146 D~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~l 221 (234)
T PLN02781 146 DFAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQI 221 (234)
T ss_pred CEEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 99987632 224567888999999999999975321 0 1233444333 334555443
Q ss_pred ecCCCeeEEEEEec
Q 027609 193 YTNDNQGMLCVHKT 206 (221)
Q Consensus 193 ~~~~~e~~l~~~K~ 206 (221)
.. ++++++++|.
T Consensus 222 p~--gdG~~i~~k~ 233 (234)
T PLN02781 222 SI--GDGVTLCRRL 233 (234)
T ss_pred Ee--CCccEEEEEe
Confidence 22 4678888874
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.5e-06 Score=77.11 Aligned_cols=120 Identities=22% Similarity=0.259 Sum_probs=73.1
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc--c--ee-ccccccCCCC---CCccCeee
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF--G--LY-HDWCESFNTY---PRTYDLLH 137 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~--~--~~-~d~~e~f~~y---p~sFDlVh 137 (221)
.++|||+|||+|+|+.+.+..+.. .++.+|.+ .+++.+.+. |+. . .+ .|..+.+..+ .++||+|.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~--~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 678999999999998776655542 56888876 477666543 442 1 12 2322211122 25899999
Q ss_pred ec-ccccccc-------ccHHHHHHHhhhhccCCeEEEEEcCh------hhHHHHHHHHHhcCCeEEEe
Q 027609 138 AD-HLFSTIK-------KSLKAVVAEVDRILRPDGNLILRDDA------ETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 138 ~~-~v~~h~~-------~d~~~vL~EmdRVLRPGG~~ii~d~~------~~~~~i~~i~~~l~W~~~~~ 192 (221)
++ -.|..-. .+...++.-..++|+|||.+++..+. .+.+.+.+-+..-+-++++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 88 2222110 03455566678999999999987653 34455555555555555543
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.3e-06 Score=72.63 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=76.4
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc----eeccccccCCCCCCccCeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG----LYHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~----~~~d~~e~f~~yp~sFDlVh 137 (221)
-....+|||.|.|+|.++++|+.. +-+ ..|+..+.. +..+.|.+. |+.. ...|.++.. ++..||.|.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~-G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~--~~~~vDav~ 168 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPE-GHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI--DEEDVDAVF 168 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCC-ceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc--cccccCEEE
Confidence 345889999999999999999853 212 245666653 466666554 5544 224655532 357999887
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCe
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWD 188 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~ 188 (221)
.. .+ +|..+|.-++.+|+|||.+++=-+. +.+.++-..++..+|-
T Consensus 169 LD-----mp-~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 169 LD-----LP-DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred Ec-----CC-ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 66 67 8999999999999999999876543 3344443344455663
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-06 Score=75.32 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=55.4
Q ss_pred ccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---eeccccccCCCCC--Ccc
Q 027609 64 MGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LYHDWCESFNTYP--RTY 133 (221)
Q Consensus 64 L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~d~~e~f~~yp--~sF 133 (221)
|++++ ..+|||+|||+|-++|.|+..-..+..|+.++.. ...+.|.++ |+.+ ...|-.+ .+| ..|
T Consensus 68 L~l~p--g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~---g~~~~apf 142 (209)
T PF01135_consen 68 LDLKP--GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE---GWPEEAPF 142 (209)
T ss_dssp TTC-T--T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG---TTGGG-SE
T ss_pred HhcCC--CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh---ccccCCCc
Confidence 33444 6899999999999999887641111134566653 355555554 3322 2334332 344 789
Q ss_pred CeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 134 DLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 134 DlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|.||+.......+ ..+ -+-|||||.+|+--
T Consensus 143 D~I~v~~a~~~ip----~~l---~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 143 DRIIVTAAVPEIP----EAL---LEQLKPGGRLVAPI 172 (209)
T ss_dssp EEEEESSBBSS------HHH---HHTEEEEEEEEEEE
T ss_pred CEEEEeeccchHH----HHH---HHhcCCCcEEEEEE
Confidence 9999997775433 223 35699999999853
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.6e-05 Score=65.41 Aligned_cols=118 Identities=18% Similarity=0.196 Sum_probs=78.0
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH---c-Cccc--ee-ccccccCCCCCCccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE---R-GLFG--LY-HDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e---R-Gl~~--~~-~d~~e~f~~yp~sFDlVh 137 (221)
|...+...++|+|||+|+.+-.++-.+ ....++.++.. +.++.+.. | |+.+ ++ .+--+.|+..| +||.|.
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiF 107 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIF 107 (187)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEE
Confidence 344457799999999999999887222 23356888864 34544333 2 4333 22 23333344445 899988
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcC-hhhHHHHHHHHHhcCC-eEE
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHW-DVR 190 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-~~~~~~i~~i~~~l~W-~~~ 190 (221)
-..- - +...+|.-...-|||||.+|+--. .+....+-+.++.+.+ ++.
T Consensus 108 IGGg-~----~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 108 IGGG-G----NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred ECCC-C----CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 7765 2 567889999999999999999843 3445556666777888 554
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.1e-06 Score=66.82 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=61.1
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc----cceec-cccccCCCCC-CccCeeeecc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL----FGLYH-DWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl----~~~~~-d~~e~f~~yp-~sFDlVh~~~ 140 (221)
.....+|||+|||+|.++..|++++. .++++|.+ .+++.+.++-- +.+++ |. ..+ +++ ..||.|.++-
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~-~~~-~~~~~~~d~vi~n~ 85 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDA-LKF-DLPKLQPYKVVGNL 85 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECch-hcC-CccccCCCEEEECC
Confidence 33467899999999999999999853 46888876 48887776621 12333 32 222 245 5699998875
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
-++........++.+. -+.++|++++..
T Consensus 86 Py~~~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 86 PYNISTPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred CcccHHHHHHHHHhcC--CCcceEEEEEEH
Confidence 5442221333343332 256899998874
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.9e-06 Score=71.49 Aligned_cols=118 Identities=8% Similarity=-0.003 Sum_probs=79.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHH-cCcc-----------------ce-eccccccCCCC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYE-RGLF-----------------GL-YHDWCESFNTY 129 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~e-RGl~-----------------~~-~~d~~e~f~~y 129 (221)
...+||+.|||.|--+.+|+++|.. |+++|.+. .++.+++ .|+. .+ ..|.-+ +++.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~-l~~~ 118 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN-LPKI 118 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC-CCcc
Confidence 4579999999999999999999854 58888764 5554433 2221 11 123211 2111
Q ss_pred --C-CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcC--------hhh---HHHHHHHHHhcCCeEEEe
Q 027609 130 --P-RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD--------AET---IVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 130 --p-~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~--------~~~---~~~i~~i~~~l~W~~~~~ 192 (221)
. +.||+|.=..+|++++. .......-|.++|||||.+++-.- .++ .+++++++ +-.|++...
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf-~~~~~i~~l 195 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNF-SAKIKFELI 195 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhc-cCCceEEEe
Confidence 1 57999999899999986 678999999999999998876521 122 35566554 445666543
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.7e-06 Score=75.96 Aligned_cols=95 Identities=17% Similarity=0.281 Sum_probs=74.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc---Cccc--eeccccccCCCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER---GLFG--LYHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR---Gl~~--~~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
.+..++|+||+.|..+..|..++|- .+.-.|-+ .|++-+.+- ++.- .+.| |-|.+|. ++||||.++..+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~D--EE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGD--EEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecc--hhcccccccchhhhhhhhhh
Confidence 4778999999999999999999864 45666766 577766544 3332 2344 5577787 999999998666
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
||.+|.-.-|...+-+|||.|.||-+
T Consensus 148 -HW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 148 -HWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred -hhhccCchHHHHHHHhcCCCccchhH
Confidence 47767778899999999999999987
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.8e-06 Score=73.82 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=71.0
Q ss_pred CCeEEeecCcchH----HHHHHhhC-C--CeEEEeccCCCC-CCHHHHHHc--------Ccc----------------c-
Q 027609 71 VRNVMDMRAVYGG----FAAALKDL-K--VWVMNVVPIESP-DTLPIIYER--------GLF----------------G- 117 (221)
Q Consensus 71 ~r~VLD~GcG~G~----faa~L~~~-~--v~vmnv~~~d~~-~~l~~a~eR--------Gl~----------------~- 117 (221)
.-+|...||.+|- +|..|.+. + .+-..|.++|.+ +.|+.|.+= +++ +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3689999999994 66666553 1 123468899986 477655432 000 0
Q ss_pred -------------eeccccccCCCCC--CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 118 -------------LYHDWCESFNTYP--RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 118 -------------~~~d~~e~f~~yp--~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
..||+.+ ++|| +.||+|.|..+|.|+.. ....++..+.+.|+|||++++....
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~--~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLA--KQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEEChHHHccCEEEcccCCC--CCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 1245443 1243 89999999999999865 7899999999999999999998754
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.3e-06 Score=72.93 Aligned_cols=107 Identities=23% Similarity=0.263 Sum_probs=73.5
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-----CCHHHHHHcCccc--ee-ccccccCCCC-C-CccCeeeeccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-----DTLPIIYERGLFG--LY-HDWCESFNTY-P-RTYDLLHADHL 141 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-----~~l~~a~eRGl~~--~~-~d~~e~f~~y-p-~sFDlVh~~~v 141 (221)
..+|++|||.|.|...++.++-.. |+.+++.. ..++.+.+.|+.+ ++ +|.-+-+..+ | +|.|-|+-.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~-- 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN-- 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE--
Confidence 479999999999999999986443 67777762 3667788888833 23 4433333334 4 599999875
Q ss_pred cc-cccc--------cHHHHHHHhhhhccCCeEEEEEcChh-hHHH-HHHH
Q 027609 142 FS-TIKK--------SLKAVVAEVDRILRPDGNLILRDDAE-TIVE-VEDL 181 (221)
Q Consensus 142 ~~-h~~~--------d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~-i~~i 181 (221)
|. .|+. --..+|.++.|+|+|||.+.+.++++ ..+. ++..
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~ 177 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEV 177 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHH
Confidence 32 1221 22478999999999999999986654 3444 4444
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=77.64 Aligned_cols=120 Identities=14% Similarity=0.152 Sum_probs=76.5
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-----CCHHHHHHcCccce--ec-cccccCCCCC-CccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-----DTLPIIYERGLFGL--YH-DWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-----~~l~~a~eRGl~~~--~~-d~~e~f~~yp-~sFDlVh~~ 139 (221)
.....+||+|||.|.|...++.+.-.. |+++++.. ..+..+.++|+.++ +. |...-..-|| +++|-||..
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~-~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDA-LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCC-CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 357889999999999999999885332 67777763 24556667777543 21 2110112267 999999876
Q ss_pred cccc-----cccc--cHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHH-HHhcCCeE
Q 027609 140 HLFS-----TIKK--SLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDL-VKSLHWDV 189 (221)
Q Consensus 140 ~v~~-----h~~~--d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i-~~~l~W~~ 189 (221)
.--- |... --..+|.++.|+|||||.+.+.+++ ++.+.+... -..-+++.
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEI 483 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEe
Confidence 2221 1111 2248899999999999999887554 445554444 33334553
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.4e-05 Score=70.44 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=72.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCC--CCC-CccCeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFN--TYP-RTYDLLH 137 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~--~yp-~sFDlVh 137 (221)
....+|||+|||+|.++..|+++.. .++++|.+ ++++.+.++ |+.. . ..|+.+.+. +++ ++||+|.
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 3457899999999999999998753 57889986 588877654 3322 1 234433222 244 7899998
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeEE
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~~ 190 (221)
++-=.. ....++..+.+ ++|++.++++=.. .....+..+. .-.|++.
T Consensus 373 ~dPPr~----g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~-~~gY~l~ 420 (443)
T PRK13168 373 LDPPRA----GAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLV-EAGYRLK 420 (443)
T ss_pred ECcCCc----ChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHh-hCCcEEE
Confidence 762211 23345555555 6999999999444 3445555554 3357764
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.4e-05 Score=67.12 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=64.6
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHc-------Ccccee-ccccccCCCCCCccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYER-------GLFGLY-HDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eR-------Gl~~~~-~d~~e~f~~yp~sFDlVh~~ 139 (221)
....+|||+|||+|+|+..|+++|+. .++++|.+. |+...... +..++- .+|.+ +. .|++.|.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~-~~-----~d~~~~D 145 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPAD-IF-----PDFATFD 145 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhH-cC-----CCceeee
Confidence 35779999999999999999999764 478889864 66542222 111111 13322 11 2444444
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEE-------------------cC---hhhHHHHHHHHHhcCCeEE
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILR-------------------DD---AETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~-------------------d~---~~~~~~i~~i~~~l~W~~~ 190 (221)
-+|.-+ ..+|..|.+.|+| |.+++- |. ...++++...+....|.+.
T Consensus 146 vsfiS~----~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 146 VSFISL----ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred EEEeeh----HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 334312 2356677777777 665544 21 2235666666777888764
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.7e-05 Score=70.16 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=72.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCC--CC-CccCeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNT--YP-RTYDLLH 137 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~--yp-~sFDlVh 137 (221)
....+|||+|||+|.|+..|++... .|+++|.+ ++++.+.+. |+.+ . ..|..+.++. +. ++||+|.
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 3457899999999999999988643 46888875 477766653 3322 2 2343322222 33 6799998
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
++---.. -...++.++.+ |+|++.++++-....+.+--+.+..-.|++.
T Consensus 368 ~dPPr~G---~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 368 LDPPRKG---CAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred ECcCCCC---CCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 7522111 12466666665 8999999998665555444444555567654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.9e-05 Score=65.85 Aligned_cols=100 Identities=21% Similarity=0.357 Sum_probs=58.3
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHc----C--ccc----eeccccccCC-C-CC-Ccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYER----G--LFG----LYHDWCESFN-T-YP-RTY 133 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eR----G--l~~----~~~d~~e~f~-~-yp-~sF 133 (221)
....++||++|||+|-.+..++.. +.. .|+-+|.++.++.+... + ..+ ...||.+... . .+ +.|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~--~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAA--RVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-S--EEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhccCCc--eEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 456889999999999555555444 222 35666665544433222 1 111 3458977441 1 23 799
Q ss_pred CeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 134 DLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 134 DlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|+|.++.|+-.-. ....++.=+.++|+|+|.+++..
T Consensus 121 D~IlasDv~Y~~~-~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 121 DVILASDVLYDEE-LFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SEEEEES--S-GG-GHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CEEEEecccchHH-HHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999999996433 67788888899999999988874
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.1e-05 Score=68.08 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=60.2
Q ss_pred CCeEEeecCcchHHHHHHhhCC--CeEEEeccCCCC-CCHHHHHHcCccc--eeccccccCCC--CCCccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESP-DTLPIIYERGLFG--LYHDWCESFNT--YPRTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~--v~vmnv~~~d~~-~~l~~a~eRGl~~--~~~d~~e~f~~--yp~sFDlVh~~~v~~ 143 (221)
..+|||+|||+|.|+.+++.+- ....+|+++|.. .+++.+.+. +.. .++ ..+.. ++.+||+|.|+==|.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n-~~~~~~~~---~D~~~~~~~~~FDlIIsNPPY~ 125 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI-VPEATWIN---ADALTTEFDTLFDMAISNPPFG 125 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh-ccCCEEEE---cchhcccccCCccEEEECCCCC
Confidence 5689999999999999887641 112367888886 588888755 322 221 12322 347899999883332
Q ss_pred -----cc---c-c--cHHHHHHHhhhhccCCeEE
Q 027609 144 -----TI---K-K--SLKAVVAEVDRILRPDGNL 166 (221)
Q Consensus 144 -----h~---~-~--d~~~vL~EmdRVLRPGG~~ 166 (221)
+. + . -...++....|+|+||+.+
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I 159 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI 159 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence 11 0 0 2456888888988888873
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.8e-05 Score=66.82 Aligned_cols=130 Identities=15% Similarity=0.238 Sum_probs=87.4
Q ss_pred cchhhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcch----HHHHHHhhCCC----eEEEeccCCCC-CCHHHHHH--
Q 027609 44 DFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYG----GFAAALKDLKV----WVMNVVPIESP-DTLPIIYE-- 112 (221)
Q Consensus 44 ~f~~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G----~faa~L~~~~v----~vmnv~~~d~~-~~l~~a~e-- 112 (221)
.|=.|.++|.....+.-..+++-..+..-+|.-+||++| ++|-.|.+... +.++|.++|.+ ..|+.|..
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~ 149 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGI 149 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCC
Confidence 355667777776655333333322225778999999999 46666666542 45688888885 35553321
Q ss_pred -------cCcc-------------c--------------eeccccccCCCCCCccCeeeeccccccccc-cHHHHHHHhh
Q 027609 113 -------RGLF-------------G--------------LYHDWCESFNTYPRTYDLLHADHLFSTIKK-SLKAVVAEVD 157 (221)
Q Consensus 113 -------RGl~-------------~--------------~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~-d~~~vL~Emd 157 (221)
+|++ | -.||+-+.- ++++-||+|.|-.|+..+.. .-..++..++
T Consensus 150 Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~-~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~ 228 (268)
T COG1352 150 YPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDS-PFLGKFDLIFCRNVLIYFDEETQERILRRFA 228 (268)
T ss_pred CChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCc-cccCCCCEEEEcceEEeeCHHHHHHHHHHHH
Confidence 3321 1 124443211 16689999999999997765 6789999999
Q ss_pred hhccCCeEEEEEcChhh
Q 027609 158 RILRPDGNLILRDDAET 174 (221)
Q Consensus 158 RVLRPGG~~ii~d~~~~ 174 (221)
..|+|||++++..+..+
T Consensus 229 ~~L~~gG~LflG~sE~~ 245 (268)
T COG1352 229 DSLKPGGLLFLGHSETI 245 (268)
T ss_pred HHhCCCCEEEEccCccc
Confidence 99999999999976543
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.6e-05 Score=65.71 Aligned_cols=131 Identities=21% Similarity=0.260 Sum_probs=86.5
Q ss_pred eEEeecCcchHHHHHHhhC-CCeEEEeccCCCCC-C----HHHHHHcCccce----eccccccCC-------CCCCccCe
Q 027609 73 NVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPD-T----LPIIYERGLFGL----YHDWCESFN-------TYPRTYDL 135 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~-~----l~~a~eRGl~~~----~~d~~e~f~-------~yp~sFDl 135 (221)
+||.+|||+|.-+++++.. +- +.--|.|... . ..-+.+.|+.++ .-|.++.-- .++++||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 7999999999999998876 31 2346777642 2 223456676442 223332211 13479999
Q ss_pred eeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcC----------------------hh-----hHHHHHHHHHhcCC
Q 027609 136 LHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD----------------------AE-----TIVEVEDLVKSLHW 187 (221)
Q Consensus 136 Vh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~----------------------~~-----~~~~i~~i~~~l~W 187 (221)
|.|..++|--+- .-+.+|.+..|+|+|||.|++=-+ ++ -++.+.+++.+-++
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 999988873221 678899999999999999998721 11 15678888888777
Q ss_pred eEEE-eecCCCeeEEEEEe
Q 027609 188 DVRM-IYTNDNQGMLCVHK 205 (221)
Q Consensus 188 ~~~~-~~~~~~e~~l~~~K 205 (221)
+... .+=--..++||.+|
T Consensus 186 ~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred ccCcccccCCCCeEEEEeC
Confidence 7532 11112468888886
|
The function of this family is unknown. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.4e-05 Score=77.49 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=77.8
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c------------------cc-eeccccccC
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L------------------FG-LYHDWCESF 126 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l------------------~~-~~~d~~e~f 126 (221)
..+|||+|||+|.++..|+++.-. ..++++|.+ ++++.|.+.- + +. ...||.+.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 457999999999999999886311 157888886 5777764431 1 11 223554432
Q ss_pred CCCCCccCeeeecc--ccc------------cc-----------c--------c----cHHHHHHHhhhhccCCeEEEEE
Q 027609 127 NTYPRTYDLLHADH--LFS------------TI-----------K--------K----SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 127 ~~yp~sFDlVh~~~--v~~------------h~-----------~--------~----d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
......||+|.|+= +-. |- . + -...++.|..++|||||++++=
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11112699998762 110 10 0 0 1257788999999999999988
Q ss_pred cChhhHHHHH-HHHHhcCCeEE
Q 027609 170 DDAETIVEVE-DLVKSLHWDVR 190 (221)
Q Consensus 170 d~~~~~~~i~-~i~~~l~W~~~ 190 (221)
-.....+.+. +++.+..|+..
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRIT 299 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCee
Confidence 7777778888 68887777653
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00028 Score=64.40 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=91.4
Q ss_pred hhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCCC-CHHHHHHcC----c---cc
Q 027609 47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPD-TLPIIYERG----L---FG 117 (221)
Q Consensus 47 ~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~-~l~~a~eRG----l---~~ 117 (221)
.+|+.|-..|-. -.+.. .+.....+||+|||+|.++-.|+.. + . .-++++|.+. .+.+|.+.. + +.
T Consensus 128 pETEE~V~~Vid-~~~~~--~~~~~~~ildlgtGSGaIslsll~~L~-~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 128 PETEEWVEAVID-ALNNS--EHSKHTHILDLGTGSGAISLSLLHGLP-Q-CTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred ccHHHHHHHHHH-HHhhh--hhcccceEEEecCCccHHHHHHHhcCC-C-ceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 567788777754 11212 2333448999999999999988765 2 1 1357777763 666665542 2 33
Q ss_pred eeccc--cccCCCCC---CccCeeeecc--cccc-----------cc------------ccHHHHHHHhhhhccCCeEEE
Q 027609 118 LYHDW--CESFNTYP---RTYDLLHADH--LFST-----------IK------------KSLKAVVAEVDRILRPDGNLI 167 (221)
Q Consensus 118 ~~~d~--~e~f~~yp---~sFDlVh~~~--v~~h-----------~~------------~d~~~vL~EmdRVLRPGG~~i 167 (221)
+.|.- .+.+.++| ..+|++.|+- +++. |. ++...+..=.-|.|+|||++.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 44321 12244554 9999998872 2210 11 034456667789999999999
Q ss_pred EEcC-----hhhHHHHHHH-HHhcCCeEEEe-ecCCCeeEEEEEe
Q 027609 168 LRDD-----AETIVEVEDL-VKSLHWDVRMI-YTNDNQGMLCVHK 205 (221)
Q Consensus 168 i~d~-----~~~~~~i~~i-~~~l~W~~~~~-~~~~~e~~l~~~K 205 (221)
+.-. ....+.+-.. .+.--|.+.+. |-.+.+++++..+
T Consensus 283 le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 283 LELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVIIHR 327 (328)
T ss_pred EEecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEEEe
Confidence 9843 3334444333 44444555443 3456788887665
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00012 Score=65.75 Aligned_cols=106 Identities=12% Similarity=0.022 Sum_probs=72.1
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccc-------cC
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCE-------SF 126 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e-------~f 126 (221)
.|.++|- +...+-++||=+|.|-|+.++.+++++- +|+-+|.. +.++++++- ++.....+.. .+
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~-lP~~~~~~~DpRv~l~~~~ 132 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISF-FPHFHEVKNNKNFTHAKQL 132 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHH-CHHHHHhhcCCCEEEeehh
Confidence 5777775 4566789999999999999999999873 45555553 377777664 3221000000 01
Q ss_pred CC-CCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhh
Q 027609 127 NT-YPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAET 174 (221)
Q Consensus 127 ~~-yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~ 174 (221)
.. ..++||+|.+...+ +..+...+.|.|+|||.++..-..+.
T Consensus 133 ~~~~~~~fDVIIvDs~~------~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 133 LDLDIKKYDLIICLQEP------DIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred hhccCCcCCEEEEcCCC------ChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 11 13789999998643 25677889999999999999865443
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00015 Score=67.39 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=73.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCCCccCeeeeccccccccc-c
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK-S 148 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~-d 148 (221)
.+...+|+|.|.|..+..+..+=-+ +..+..|.+..++.+..-+ +|+-|--|..|-.-| +-|+|.+.-+++||.+ |
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~-ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtDed 253 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPH-IKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTDED 253 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCC-CceeecCHHHHHhhhhhhc-CCcceecccccccCC-CcCeEEEEeecccCChHH
Confidence 4788999999999999998875222 3455555554454444433 554443344565434 4459999999999998 8
Q ss_pred HHHHHHHhhhhccCCeEEEEEcC
Q 027609 149 LKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
-..+|.-..--|+|||.+|+-|.
T Consensus 254 cvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 254 CVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHhCCCCCEEEEEec
Confidence 99999999999999999999976
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.66 E-value=9.5e-05 Score=68.65 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=66.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHcC-----c------cc--eecc-----ccccCCCC
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERG-----L------FG--LYHD-----WCESFNTY 129 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eRG-----l------~~--~~~d-----~~e~f~~y 129 (221)
..++.+||+|||-||=..---+.++ -.++++|..+ -++-|..|= . .. +..| +.+.+ .+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~-e~ 192 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL-EF 192 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc-cC
Confidence 3577899999999984433322232 2467777643 455444441 0 01 1112 11222 24
Q ss_pred C-CccCeeeeccccccc-cc--cHHHHHHHhhhhccCCeEEEEEcCh--hhHHHHHHH
Q 027609 130 P-RTYDLLHADHLFSTI-KK--SLKAVVAEVDRILRPDGNLILRDDA--ETIVEVEDL 181 (221)
Q Consensus 130 p-~sFDlVh~~~v~~h~-~~--d~~~vL~EmdRVLRPGG~~ii~d~~--~~~~~i~~i 181 (221)
+ ..||+|-|..+||.- .. .-..+|.-+.+.|||||+||-+-++ .++.++++.
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 5 559999999888732 21 5567899999999999999998654 334555443
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=62.76 Aligned_cols=92 Identities=22% Similarity=0.259 Sum_probs=61.5
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eec-cccccCCCCC--CccCee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYH-DWCESFNTYP--RTYDLL 136 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~-d~~e~f~~yp--~sFDlV 136 (221)
+.....+||++|||+|-.+|-|++..- .|+.++.. ...+.|..+ |+.+ +.| |-.. -|| ..||.|
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~---G~~~~aPyD~I 142 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK---GWPEEAPYDRI 142 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc---CCCCCCCcCEE
Confidence 344579999999999999998888643 34555543 244444433 4433 222 3222 355 899999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++.......+ ..|. +=|||||.+++=..
T Consensus 143 ~Vtaaa~~vP----~~Ll---~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVP----EALL---DQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCC----HHHH---HhcccCCEEEEEEc
Confidence 9998887666 2333 57999999998654
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00015 Score=59.22 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=58.5
Q ss_pred CCCCCeEEeecCcchH-HHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC--CccCeeeeccccc
Q 027609 68 WSFVRNVMDMRAVYGG-FAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP--RTYDLLHADHLFS 143 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~-faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp--~sFDlVh~~~v~~ 143 (221)
..+.++|||+|||+|. +|..|.+.|. +|+.+|.+ +.++.+.++|+..+..|+-+ ++.. ..+|+|.+-+.=
T Consensus 14 ~~~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~--p~~~~y~~a~liysirpp- 87 (134)
T PRK04148 14 KGKNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFN--PNLEIYKNAKLIYSIRPP- 87 (134)
T ss_pred cccCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCC--CCHHHHhcCCEEEEeCCC-
Confidence 3345789999999995 9999998885 46888886 58888999988767777643 2233 889999886422
Q ss_pred cccccHHHHHHHhhh
Q 027609 144 TIKKSLKAVVAEVDR 158 (221)
Q Consensus 144 h~~~d~~~vL~EmdR 158 (221)
.++...+.|+.+
T Consensus 88 ---~el~~~~~~la~ 99 (134)
T PRK04148 88 ---RDLQPFILELAK 99 (134)
T ss_pred ---HHHHHHHHHHHH
Confidence 145555555544
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00022 Score=64.54 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=78.7
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHH----HHcCccc---e-eccccccCCCC-----CCc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPII----YERGLFG---L-YHDWCESFNTY-----PRT 132 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a----~eRGl~~---~-~~d~~e~f~~y-----p~s 132 (221)
-.+.++||++|+++|..+.+++.. +-. ..++.+|.. +..++| .+-|+-. + ..|..+.++.+ +.+
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~-G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPES-GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 345789999999999998888763 101 125566653 344444 4445532 1 22332323222 368
Q ss_pred cCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh------------hhHHHHHH----HHHhcCCeEEEeecCC
Q 027609 133 YDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA------------ETIVEVED----LVKSLHWDVRMIYTND 196 (221)
Q Consensus 133 FDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~------------~~~~~i~~----i~~~l~W~~~~~~~~~ 196 (221)
||+|....- ..+...++....+.|||||.+++.+.. .....|++ +...=++.+.+..-
T Consensus 195 FD~VFIDa~----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi-- 268 (278)
T PLN02476 195 YDFAFVDAD----KRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI-- 268 (278)
T ss_pred CCEEEECCC----HHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe--
Confidence 999987642 225667888888999999999987421 11112333 34445566654432
Q ss_pred CeeEEEEEec
Q 027609 197 NQGMLCVHKT 206 (221)
Q Consensus 197 ~e~~l~~~K~ 206 (221)
++++++++|.
T Consensus 269 gDGl~i~~K~ 278 (278)
T PLN02476 269 GDGMTICRKR 278 (278)
T ss_pred CCeeEEEEEC
Confidence 4678888874
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00056 Score=61.28 Aligned_cols=134 Identities=18% Similarity=0.211 Sum_probs=85.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCC-eEEEeccCCCCCCHHHHH----HcCc----cc-eeccccccCCCCC-CccCee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKV-WVMNVVPIESPDTLPIIY----ERGL----FG-LYHDWCESFNTYP-RTYDLL 136 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v-~vmnv~~~d~~~~l~~a~----eRGl----~~-~~~d~~e~f~~yp-~sFDlV 136 (221)
.....+|||.=.|.|-+|..-+++|+ .|+.+ ..| ++.|++|. .|+| +. +++|..|...+|+ .|||.|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~Vitv-Ekd-p~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITV-EKD-PNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEE-eeC-CCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 44588999999999999999999997 55433 111 12333221 2222 12 3456555566788 889986
Q ss_pred e-eccccccccc-cHHHHHHHhhhhccCCeEEEEEcCh--------hhHHHHHHHHHhcCCeEEEeecCCCeeE-EEEEe
Q 027609 137 H-ADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA--------ETIVEVEDLVKSLHWDVRMIYTNDNQGM-LCVHK 205 (221)
Q Consensus 137 h-~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~--------~~~~~i~~i~~~l~W~~~~~~~~~~e~~-l~~~K 205 (221)
. =.-=|++-.+ --+.+-.|+.|||||||.++-=..+ +...++.+.+++....+.-.. .|.. ++|+|
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~---~~~~gv~A~k 286 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKV---REALGVVAVK 286 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeee---hhccceEEec
Confidence 4 3333432221 2378899999999999999765432 346788888899998865332 2333 66666
Q ss_pred c
Q 027609 206 T 206 (221)
Q Consensus 206 ~ 206 (221)
+
T Consensus 287 ~ 287 (287)
T COG2521 287 P 287 (287)
T ss_pred C
Confidence 3
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00062 Score=63.05 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=81.1
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCC-CCHHHHHHcC-cc-------c---eecc
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP-DTLPIIYERG-LF-------G---LYHD 121 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~-~~l~~a~eRG-l~-------~---~~~d 121 (221)
.|.+.|. +.....++||-+|+|.|+.+..+++.+ +. +++.++.. ++++++.+.- +. . .+.|
T Consensus 88 ~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~--~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~D 165 (336)
T PLN02823 88 VYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVE--KVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIND 165 (336)
T ss_pred HHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCC--eEEEEECCHHHHHHHHHhcccccccccCCceEEEECh
Confidence 3555443 223357899999999999999988863 43 45555553 4778777652 11 0 1222
Q ss_pred ccccCCCC-CCccCeeeeccccccccc------cHHHHHH-HhhhhccCCeEEEEEcC-------hhhHHHHHHHHHhcC
Q 027609 122 WCESFNTY-PRTYDLLHADHLFSTIKK------SLKAVVA-EVDRILRPDGNLILRDD-------AETIVEVEDLVKSLH 186 (221)
Q Consensus 122 ~~e~f~~y-p~sFDlVh~~~v~~h~~~------d~~~vL~-EmdRVLRPGG~~ii~d~-------~~~~~~i~~i~~~l~ 186 (221)
- -.+..- +++||+|.+. +...... --..++. .+.|.|+|||.+++--. .+....+-+-+++.-
T Consensus 166 a-~~~L~~~~~~yDvIi~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF 243 (336)
T PLN02823 166 A-RAELEKRDEKFDVIIGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVF 243 (336)
T ss_pred h-HHHHhhCCCCccEEEec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhC
Confidence 1 112112 3789999987 2322110 0135666 78999999999987521 222333333333333
Q ss_pred CeEEEeec-----CCCeeEEEEEec
Q 027609 187 WDVRMIYT-----NDNQGMLCVHKT 206 (221)
Q Consensus 187 W~~~~~~~-----~~~e~~l~~~K~ 206 (221)
-.+..... .+.-.+++|.|.
T Consensus 244 ~~v~~y~~~vPsf~~~w~f~~aS~~ 268 (336)
T PLN02823 244 KYVVPYTAHVPSFADTWGWVMASDH 268 (336)
T ss_pred CCEEEEEeecCCCCCceEEEEEeCC
Confidence 33332211 123578888875
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.57 E-value=5.4e-05 Score=67.41 Aligned_cols=117 Identities=17% Similarity=0.201 Sum_probs=68.6
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHH----HHcCccc---e-eccccc-cCCC-CCCccCe
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPII----YERGLFG---L-YHDWCE-SFNT-YPRTYDL 135 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a----~eRGl~~---~-~~d~~e-~f~~-yp~sFDl 135 (221)
+-..+.+||+.|.|+|+++.+|+..=.....|...+.+ +..+.| .+.|+.. + ..|.|+ .|.. ..+.||.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 34458999999999999999997530001134444543 244433 3446643 2 347774 3521 2377887
Q ss_pred eeeccccccccccHHHHHHHhhhhc-cCCeEEEEE-cChhhHHHHHHHHHhcCCeE
Q 027609 136 LHADHLFSTIKKSLKAVVAEVDRIL-RPDGNLILR-DDAETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 136 Vh~~~v~~h~~~d~~~vL~EmdRVL-RPGG~~ii~-d~~~~~~~i~~i~~~l~W~~ 189 (221)
|.-. ++ +|..++.-+.++| ||||.+++= -+.+.+.+.-.-++...|.-
T Consensus 117 vfLD-----lp-~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 117 VFLD-----LP-DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp EEEE-----SS-SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred EEEe-----CC-CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 6554 78 8999999999999 999999665 44444444444466667754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00057 Score=58.24 Aligned_cols=133 Identities=21% Similarity=0.294 Sum_probs=78.6
Q ss_pred hhhhhhHHHHHhhhhhccc-CCCCCCCeEEeecCcch--HHHHHHhhCCCeEEEeccCCCC----CCH-HHHHHcCccc-
Q 027609 47 ADYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYG--GFAAALKDLKVWVMNVVPIESP----DTL-PIIYERGLFG- 117 (221)
Q Consensus 47 ~d~~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G--~faa~L~~~~v~vmnv~~~d~~----~~l-~~a~eRGl~~- 117 (221)
.....|.+++-.+ ...++ +..... +++|+|+|-| |+--+++..... ++-+|.. ..+ +++.+=||.+
T Consensus 26 ~~~~~~~~Hi~DS-L~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~~---~~LvEs~~KK~~FL~~~~~~L~L~nv 100 (184)
T PF02527_consen 26 DPEEIWERHILDS-LALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPDLQ---VTLVESVGKKVAFLKEVVRELGLSNV 100 (184)
T ss_dssp SHHHHHHHHHHHH-HGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TTSE---EEEEESSHHHHHHHHHHHHHHT-SSE
T ss_pred CHHHHHHHHHHHH-HHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCCCc---EEEEeCCchHHHHHHHHHHHhCCCCE
Confidence 4457787777552 22333 333322 7999999999 555555444333 3444442 233 4556667754
Q ss_pred -eeccccccCCCCCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhhH---HHHHHHHHhcCCeEE
Q 027609 118 -LYHDWCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETI---VEVEDLVKSLHWDVR 190 (221)
Q Consensus 118 -~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~---~~i~~i~~~l~W~~~ 190 (221)
+++.-.|. ..++.+||+|.|-. +. .+..++.-+.+.|+|||.+++--..... +..+...+.+.++..
T Consensus 101 ~v~~~R~E~-~~~~~~fd~v~aRA-v~----~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 101 EVINGRAEE-PEYRESFDVVTARA-VA----PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp EEEES-HHH-TTTTT-EEEEEEES-SS----SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred EEEEeeecc-cccCCCccEEEeeh-hc----CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 55665564 33669999999874 43 4567888888999999999988655444 444555555656543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0014 Score=61.25 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=62.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCcccee-ccccccCCCC--CCccCeeeeccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY-HDWCESFNTY--PRTYDLLHADHLFSTI 145 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~-~d~~e~f~~y--p~sFDlVh~~~v~~h~ 145 (221)
.+..++||+||++|||+..|+++|. .|+++|...|-+...+.+.+-.+ .| .|-.. ++.+|++.|..+-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~l~~~L~~~~~V~h~~~d---~fr~~p~~~~vDwvVcDmve--- 280 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGPMAQSLMDTGQVEHLRAD---GFKFRPPRKNVDWLVCDMVE--- 280 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechhcCHhhhCCCCEEEEecc---CcccCCCCCCCCEEEEeccc---
Confidence 3578999999999999999999986 46778865555544444433222 22 22222 4889999998553
Q ss_pred cccHHHHHHHhhhhccCC--eEEEEE
Q 027609 146 KKSLKAVVAEVDRILRPD--GNLILR 169 (221)
Q Consensus 146 ~~d~~~vL~EmdRVLRPG--G~~ii~ 169 (221)
.|..++.=|.+-|..| ..+|+.
T Consensus 281 --~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 281 --KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred --CHHHHHHHHHHHHhcCcccEEEEE
Confidence 5778888888888766 456666
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0002 Score=61.64 Aligned_cols=120 Identities=7% Similarity=0.020 Sum_probs=66.4
Q ss_pred cchhhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc-
Q 027609 44 DFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG- 117 (221)
Q Consensus 44 ~f~~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~- 117 (221)
.++..+..-++.+-+.+.. . ....+|||+|||+|.++..++.+++. .|+.+|.+ +.++.+.+. |+..
T Consensus 32 ~~Rp~~d~v~e~l~~~l~~---~--~~~~~vLDl~~GsG~l~l~~lsr~a~--~V~~vE~~~~a~~~a~~Nl~~~~~~~v 104 (199)
T PRK10909 32 GLRPTTDRVRETLFNWLAP---V--IVDARCLDCFAGSGALGLEALSRYAA--GATLLEMDRAVAQQLIKNLATLKAGNA 104 (199)
T ss_pred CcCcCCHHHHHHHHHHHhh---h--cCCCEEEEcCCCccHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHhCCCcE
Confidence 3556666665555441211 1 12458999999999999876666542 56777764 355544432 3211
Q ss_pred -ee-ccccccCCCCCCccCeeeeccccccccccHHHHHHHh--hhhccCCeEEEEEcCh
Q 027609 118 -LY-HDWCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEV--DRILRPDGNLILRDDA 172 (221)
Q Consensus 118 -~~-~d~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~Em--dRVLRPGG~~ii~d~~ 172 (221)
++ .|+.+.+.....+||+|.++==+.. .-...++.-+ ..+|+|+|++++....
T Consensus 105 ~~~~~D~~~~l~~~~~~fDlV~~DPPy~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 105 RVVNTNALSFLAQPGTPHNVVFVDPPFRK--GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEEEchHHHHHhhcCCCceEEEECCCCCC--ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 22 2432222111257999998743211 0112233322 3458999999998544
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00067 Score=61.54 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=73.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCC-CCCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNT-YPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~-yp~sFDlVh~~~ 140 (221)
...+|||+|||+|.|+..|++++. .|+++|.+ .+++.+.+. |+.. . ..|..+ +.. ..+.||+|.++-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~-~~~~~~~~~D~Vv~dP 248 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQ-FATAQGEVPDLVLVNP 248 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHH-HHHhcCCCCeEEEECC
Confidence 357899999999999999999763 56888886 477766543 4421 2 223222 221 236799999872
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcChhh-HHHHHHHHHhcCCeEEE---ee----cCCCeeEEEEEe
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVRM---IY----TNDNQGMLCVHK 205 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~-~~~i~~i~~~l~W~~~~---~~----~~~~e~~l~~~K 205 (221)
=-. .....+.++-.-++|++.++++-.... ...++.+ -.|++.. .| +..=|-|...++
T Consensus 249 Pr~----G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 249 PRR----GIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred CCC----CccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc---cCcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 211 112233344444789998888855544 3444444 2576642 22 334455555443
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00011 Score=63.90 Aligned_cols=119 Identities=16% Similarity=0.194 Sum_probs=79.6
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHH-HHcCcccee-------c-------cccccCCCCC--
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPII-YERGLFGLY-------H-------DWCESFNTYP-- 130 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a-~eRGl~~~~-------~-------d~~e~f~~yp-- 130 (221)
....+||+-|||.|--+..|+++|- +|+++|.+. .++.+ .++++.... . =+|..|-.++
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 3467899999999999999999983 579999874 66655 455541111 0 0122222222
Q ss_pred --CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEE--c-------Chhh---HHHHHHHHHhcCCeEEE
Q 027609 131 --RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILR--D-------DAET---IVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 131 --~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~--d-------~~~~---~~~i~~i~~~l~W~~~~ 191 (221)
+.||+|.=..+|+-++. .......=|.++|||||.+++- + ..|+ .++|++++. -.|++..
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~ 187 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEE 187 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEE
Confidence 56999998878876665 7889999999999999994333 1 1222 467777766 7888754
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00031 Score=63.10 Aligned_cols=100 Identities=10% Similarity=0.171 Sum_probs=63.7
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCc---------c-c------------------
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGL---------F-G------------------ 117 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl---------~-~------------------ 117 (221)
+.....+||+||..|.+++++++. +.- -+.++|.. ..++.|...-- . +
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r--~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPR--RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccc--eeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 556778999999999999999887 322 35666663 35555544310 0 0
Q ss_pred ------------------eeccccccCCCCC-CccCeeeecccc--ccccc---cHHHHHHHhhhhccCCeEEEEEc
Q 027609 118 ------------------LYHDWCESFNTYP-RTYDLLHADHLF--STIKK---SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 118 ------------------~~~d~~e~f~~yp-~sFDlVh~~~v~--~h~~~---d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.+.+- ..|..+. +-||+|-|-.+- .|+.. -...++.-+.|.|+|||++|+--
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~-~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLES-DDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccccccCCcchhcccccEEEec-chhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 00000 0122234 789999986332 13321 56789999999999999999973
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00035 Score=60.83 Aligned_cols=130 Identities=13% Similarity=0.180 Sum_probs=73.5
Q ss_pred CCeEEeecCcchHHHHHHhhCC-----CeEEEeccCCCCCCHHHHHHcCc---cceeccccccCCCCC-CccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLK-----VWVMNVVPIESPDTLPIIYERGL---FGLYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~-----v~vmnv~~~d~~~~l~~a~eRGl---~~~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
..+|+|+||.+|+++..++++- +..+++.|++....+..+ +|- ..+..+.-+ ..+ ..+|+|.|...
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~i--q~d~~~~~~~~~l~~---~l~~~~~DvV~sD~a 120 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFL--QGDITDEDTLEKLLE---ALGGAPVDVVLSDMA 120 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEE--eeeccCccHHHHHHH---HcCCCCcceEEecCC
Confidence 7889999999999988877762 334445555542111111 110 001111111 134 44688876543
Q ss_pred c--------ccccc-cHHHHHHHhhh-hccCCeEEEEEc-----ChhhHHHHHHHHHhcCCeEEE-eecCCCeeEEEEEe
Q 027609 142 F--------STIKK-SLKAVVAEVDR-ILRPDGNLILRD-----DAETIVEVEDLVKSLHWDVRM-IYTNDNQGMLCVHK 205 (221)
Q Consensus 142 ~--------~h~~~-d~~~vL~EmdR-VLRPGG~~ii~d-----~~~~~~~i~~i~~~l~W~~~~-~~~~~~e~~l~~~K 205 (221)
= .|+.. ....+..||.. +|+|||.|++.+ ..+.+..+++.++.++=..-. .-.++.|-+++|.+
T Consensus 121 p~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 121 PNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKG 200 (205)
T ss_pred CCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCccccCCCceEEEEEec
Confidence 2 34433 56666777765 999999999984 344566666655554422211 11345788888875
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0007 Score=59.50 Aligned_cols=123 Identities=16% Similarity=0.272 Sum_probs=83.0
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceecccccc-CCCCC-CccCeeeeccccccccc--
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCES-FNTYP-RTYDLLHADHLFSTIKK-- 147 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~-f~~yp-~sFDlVh~~~v~~h~~~-- 147 (221)
-++|||||=....+.. ..+ | .+|+++|....-+-+ ...|..+. +|.-+ +.||+|.|+.|+...++
T Consensus 53 lrlLEVGals~~N~~s--~~~-~-fdvt~IDLns~~~~I-------~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSG-W-FDVTRIDLNSQHPGI-------LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCccc--ccC-c-eeeEEeecCCCCCCc-------eeeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 6899999975543222 122 3 367888874322211 23444443 33335 89999999999998875
Q ss_pred cHHHHHHHhhhhccCCeE-----EEEEcChh--------hHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 148 SLKAVVAEVDRILRPDGN-----LILRDDAE--------TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~-----~ii~d~~~--------~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
.....+.-+.+.|||+|. ++|--+.+ ..+.++.++.+|.....-.....+--...++|
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~ 192 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRK 192 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEee
Confidence 778899999999999999 77765433 14788999999999986554444444455555
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00071 Score=65.32 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=64.0
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHH----HHHHcCccce--e-ccccccCC-CCCCccCeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLP----IIYERGLFGL--Y-HDWCESFN-TYPRTYDLLH 137 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~----~a~eRGl~~~--~-~d~~e~f~-~yp~sFDlVh 137 (221)
+.....+||||.||+|+=+.+|++.---...|+..|.+ +-++ -+..-|+..+ . .|- ..+. .++.+||.|.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~-~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDG-RVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch-hhhhhhchhhcCeEE
Confidence 44567899999999999777776641001135677764 2222 2333355432 2 232 2232 3568899999
Q ss_pred ----eccccccccccH------------------HHHHHHhhhhccCCeEEEEEcCh
Q 027609 138 ----ADHLFSTIKKSL------------------KAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 138 ----~~~v~~h~~~d~------------------~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|+..-. +..+| ..+|....+.|||||++|.+++.
T Consensus 189 vDaPCSG~G~-~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 189 LDAPCSGEGT-VRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EcCCCCCCcc-cccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 663211 11122 56788889999999999999874
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00026 Score=67.94 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=70.4
Q ss_pred CCccCCCCCcccccccCccCCCCcccchhhhhhhHHHHHhhhhhccc--CCCC----CCCeEEeecCcchHHHHHHhhCC
Q 027609 19 WPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMG--INWS----FVRNVMDMRAVYGGFAAALKDLK 92 (221)
Q Consensus 19 WP~rl~~~p~rl~~~~~~~~~~~~~~f~~d~~~W~~~v~~~Y~~~L~--i~~~----~~r~VLD~GcG~G~faa~L~~~~ 92 (221)
+..+|..|-.=|..... +.++|.|+.|.-....--+..+. .|. +... +...|||+|||+|-++...++.+
T Consensus 133 ~~d~Lq~PLqPl~dnL~---s~tYe~fE~D~vKY~~Ye~AI~~-al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 133 YEDYLQAPLQPLMDNLE---SQTYEVFEKDPVKYDQYERAIEE-ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp ----EE----TTTS------HHHHHHHCC-HHHHHHHHHHHHH-HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTT
T ss_pred chhhccCCCCCchhhhc---cccHhhHhcCHHHHHHHHHHHHH-HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHH
Confidence 33455555333443111 24688999998765432222122 122 2222 25679999999999875444332
Q ss_pred C---eEEEeccCCCCC----CHH-HHHHcCc---cceeccccccCCCCCCccCeeeeccccccc-cccHHHHHHHhhhhc
Q 027609 93 V---WVMNVVPIESPD----TLP-IIYERGL---FGLYHDWCESFNTYPRTYDLLHADHLFSTI-KKSLKAVVAEVDRIL 160 (221)
Q Consensus 93 v---~vmnv~~~d~~~----~l~-~a~eRGl---~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~-~~d~~~vL~EmdRVL 160 (221)
. ....|.+++.+. +++ .+.+.|+ +-+++.-.+.+. -|...|+|.+--+=+-. .+-.-..|.-.+|.|
T Consensus 209 ~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~-lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfL 287 (448)
T PF05185_consen 209 ARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE-LPEKVDIIVSELLGSFGDNELSPECLDAADRFL 287 (448)
T ss_dssp HHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC-HSS-EEEEEE---BTTBTTTSHHHHHHHGGGGE
T ss_pred HHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC-CCCceeEEEEeccCCccccccCHHHHHHHHhhc
Confidence 1 122456666543 222 2345555 334553333232 35899999987332211 112234789999999
Q ss_pred cCCeEEEEE
Q 027609 161 RPDGNLILR 169 (221)
Q Consensus 161 RPGG~~ii~ 169 (221)
||||.+|=+
T Consensus 288 kp~Gi~IP~ 296 (448)
T PF05185_consen 288 KPDGIMIPS 296 (448)
T ss_dssp EEEEEEESS
T ss_pred CCCCEEeCc
Confidence 999987743
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00033 Score=60.52 Aligned_cols=129 Identities=17% Similarity=0.185 Sum_probs=75.5
Q ss_pred CCCCeEEeecCcchHHHHHHhhC---CCeEEEeccCCCC-CCHHHH----HHcCccc---e-eccccccCCC----C-CC
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESP-DTLPII----YERGLFG---L-YHDWCESFNT----Y-PR 131 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~---~v~vmnv~~~d~~-~~l~~a----~eRGl~~---~-~~d~~e~f~~----y-p~ 131 (221)
.+-++||.+||++|--+.+|+.. +.. ++.++.. +..++| ..-|+-. + ..|..+.++. . ++
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~---i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGK---ITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSE---EEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccce---EEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 45789999999999877777753 333 4455543 344444 4446532 2 2343332332 2 26
Q ss_pred ccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChh------------hHHHH----HHHHHhcCCeEEEeecC
Q 027609 132 TYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE------------TIVEV----EDLVKSLHWDVRMIYTN 195 (221)
Q Consensus 132 sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~------------~~~~i----~~i~~~l~W~~~~~~~~ 195 (221)
+||+|....-=. +....+..+-+.|||||.+++.+..- ....| +.+...=+.++.+..-
T Consensus 121 ~fD~VFiDa~K~----~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi- 195 (205)
T PF01596_consen 121 QFDFVFIDADKR----NYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI- 195 (205)
T ss_dssp SEEEEEEESTGG----GHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS-
T ss_pred ceeEEEEccccc----chhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe-
Confidence 899998775333 45567777889999999999995321 11122 3334444555544322
Q ss_pred CCeeEEEEEec
Q 027609 196 DNQGMLCVHKT 206 (221)
Q Consensus 196 ~~e~~l~~~K~ 206 (221)
++++++++|+
T Consensus 196 -gdGl~l~~K~ 205 (205)
T PF01596_consen 196 -GDGLTLARKR 205 (205)
T ss_dssp -TTEEEEEEE-
T ss_pred -CCeeEEEEEC
Confidence 5689999884
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=8.9e-05 Score=62.64 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=39.3
Q ss_pred CCCCC-CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEE
Q 027609 126 FNTYP-RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 126 f~~yp-~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.++|. +|.|+|.|.+++.|+.- ....+++|.+|+|||||++-+.
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 34565 99999999999999875 7788999999999999999988
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00041 Score=64.60 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=64.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC----CHHHHHHcCcccee---ccccccCCCCC-CccCeeeec-
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD----TLPIIYERGLFGLY---HDWCESFNTYP-RTYDLLHAD- 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~----~l~~a~eRGl~~~~---~d~~e~f~~yp-~sFDlVh~~- 139 (221)
.+.+.|||+|||+|-++..-++.|+. .|.+++.++ ..+++.+.|+-.++ ..--|.+ -.| ...|+|.+.
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~--~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGAR--KVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEW 135 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcc--eEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehh
Confidence 36889999999999998888888743 466777654 44577777763322 2112222 145 999999876
Q ss_pred -cccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 140 -HLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 140 -~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
..+-.+.+-..-+|.-=||=|+|||.++=+
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 112112324556777779999999988744
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00017 Score=65.60 Aligned_cols=92 Identities=15% Similarity=0.175 Sum_probs=61.5
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHcCccce-eccccccCCCCC-CccCeeeeccccccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGLFGL-YHDWCESFNTYP-RTYDLLHADHLFSTIKK 147 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eRGl~~~-~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~ 147 (221)
...++|+|||.|-+ +.-.+. ..+.+-|... .+..+...|-..+ ..| +-.+ ||+ .+||......++||+..
T Consensus 46 gsv~~d~gCGngky---~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~~~ad-~l~~-p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKY---LGVNPL--CLIIGCDLCTGLLGGAKRSGGDNVCRAD-ALKL-PFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cceeeecccCCccc---CcCCCc--ceeeecchhhhhccccccCCCceeehhh-hhcC-CCCCCccccchhhhhhhhhhh
Confidence 66799999999954 222121 1235555543 4555554444222 233 2223 466 99999999999999875
Q ss_pred --cHHHHHHHhhhhccCCeEEEEE
Q 027609 148 --SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 148 --d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
-...+|.|+-|+|||||...+-
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEE
Confidence 6789999999999999995444
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00035 Score=62.18 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=44.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc---cc-eeccccccCCCCCC-ccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL---FG-LYHDWCESFNTYPR-TYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl---~~-~~~d~~e~f~~yp~-sFDlVh~~ 139 (221)
....+|||+|||+|.++..|++++. .++++|.+ ++++.+.++.- +. ..+|..+ + +++. .+|.|.++
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~-~-~~~~~~~~~vv~N 112 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALK-V-DLSELQPLKVVAN 112 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhc-C-CHHHcCcceEEEe
Confidence 3457899999999999999999864 56888875 58888877621 12 2334322 2 2332 25888887
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0053 Score=54.82 Aligned_cols=117 Identities=23% Similarity=0.334 Sum_probs=79.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC--ccceeccccccCCC--CCCccCeeeeccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG--LFGLYHDWCESFNT--YPRTYDLLHADHLFS 143 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG--l~~~~~d~~e~f~~--yp~sFDlVh~~~v~~ 143 (221)
.+.+.+||+|+-+|||+--|+++|+. .|.++|.. +++.--.... .+-+-.--...+.+ +..-.|++.|.-.|.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI 155 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI 155 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehh
Confidence 36899999999999999999999875 35666653 3443222221 11110000111111 234678999998886
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEE-------------------c---ChhhHHHHHHHHHhcCCeEEE
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILR-------------------D---DAETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~-------------------d---~~~~~~~i~~i~~~l~W~~~~ 191 (221)
....+|-.+..+|.|+|.++.- | +..++.++++.+....|.+.-
T Consensus 156 ----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 156 ----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred ----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 4568899999999999988876 2 234578899999999999863
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=60.00 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=86.0
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCC-CCHHHHHHcCccceec------------
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP-DTLPIIYERGLFGLYH------------ 120 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~-~~l~~a~eRGl~~~~~------------ 120 (221)
.|.+++. +..+..|+||=+|-|.|+.++.+++.+ +. .++-++.. +.++++++. ++ ..+
T Consensus 61 ~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve--~i~~VEID~~Vi~~ar~~-l~-~~~~~~~dpRv~i~i 136 (282)
T COG0421 61 IYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVE--RITMVEIDPAVIELARKY-LP-EPSGGADDPRVEIII 136 (282)
T ss_pred HHHHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcc--eEEEEEcCHHHHHHHHHh-cc-CcccccCCCceEEEe
Confidence 3555443 345556899999999999999999986 43 34444442 477777665 32 111
Q ss_pred -cccccCCCCCCccCeeeeccccccccc----cHHHHHHHhhhhccCCeEEEEEcChhh-----HHHHHHHHHhcCCeEE
Q 027609 121 -DWCESFNTYPRTYDLLHADHLFSTIKK----SLKAVVAEVDRILRPDGNLILRDDAET-----IVEVEDLVKSLHWDVR 190 (221)
Q Consensus 121 -d~~e~f~~yp~sFDlVh~~~v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d~~~~-----~~~i~~i~~~l~W~~~ 190 (221)
|--+-+..++++||+|.+.. ....-. .-..+.....|.|+|+|.++.....+. +..+.+..+++.+...
T Consensus 137 ~Dg~~~v~~~~~~fDvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~ 215 (282)
T COG0421 137 DDGVEFLRDCEEKFDVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVP 215 (282)
T ss_pred ccHHHHHHhCCCcCCEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccc
Confidence 21111112567999999873 222100 117889999999999999999944333 3355555667744432
Q ss_pred Ee------ecCCCeeEEEEE
Q 027609 191 MI------YTNDNQGMLCVH 204 (221)
Q Consensus 191 ~~------~~~~~e~~l~~~ 204 (221)
.+ ...+-..+.++.
T Consensus 216 ~~~~~ipt~~~g~~~f~~~s 235 (282)
T COG0421 216 PYVAPIPTYPSGFWGFIVAS 235 (282)
T ss_pred cceeccceecCCceEEEEee
Confidence 21 122335777777
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0041 Score=57.93 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=67.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCC-CCCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNT-YPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~-yp~sFDlVh~~~ 140 (221)
...+|||++||+|.|+..|+.++. .++++|.+ .+++.+.+. |+.. .+ .|. +.+.. ....||+|.++=
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~vi~DP 308 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS-AKFATAQMSAPELVLVNP 308 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-HHHHHhcCCCCCEEEECC
Confidence 357899999999999999998763 46888875 467666554 3311 22 232 11211 125699998872
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcChhh-HHHHHHHHHhcCCeEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVR 190 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~-~~~i~~i~~~l~W~~~ 190 (221)
=...+. ..++..+. -++|++.++++-.... ...+..+ -.|++.
T Consensus 309 Pr~G~~---~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~ 352 (374)
T TIGR02085 309 PRRGIG---KELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIE 352 (374)
T ss_pred CCCCCc---HHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence 222222 34444443 3799999999965544 4556655 358765
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.001 Score=62.97 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=79.8
Q ss_pred hhhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHc----Cccceec
Q 027609 46 TADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYER----GLFGLYH 120 (221)
Q Consensus 46 ~~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eR----Gl~~~~~ 120 (221)
..+|..|-.+-.+ ...+. +....++|||+=|-||+|+.+.+..|+- .|+.+|.++ .|+.+++. |+.+.-|
T Consensus 196 g~kTGfFlDqR~~--R~~l~-~~~~GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~ 270 (393)
T COG1092 196 GLKTGFFLDQRDN--RRALG-ELAAGKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRH 270 (393)
T ss_pred cccceeeHHhHHH--HHHHh-hhccCCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccce
Confidence 4566666444332 11222 1223899999999999999999988873 368888875 78877765 4433223
Q ss_pred ccc--ccCCC---CCC---ccCeeeec-ccccc----c---cccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 121 DWC--ESFNT---YPR---TYDLLHAD-HLFST----I---KKSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 121 d~~--e~f~~---yp~---sFDlVh~~-~v~~h----~---~~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
+|- ..|.. +.+ +||+|... =.|.. . ..+..+++.+.-+||+|||.++++.+..
T Consensus 271 ~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 271 RFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred eeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 221 11222 223 99999865 33321 1 1177789999999999999999997754
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00093 Score=58.95 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=46.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC--c--ccee-ccccccCCCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG--L--FGLY-HDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG--l--~~~~-~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
...+|||+|||+|.++..|++++. .++++|.+ ++++.+.++- . +.++ .|. ..++ ..||.|.|+--+
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~----~~~~~~~~d~Vv~NlPy 101 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDA----LKVDLPEFNKVVSNLPY 101 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEecc----ccCCchhceEEEEcCCc
Confidence 468899999999999999999854 46788875 4888777652 1 1222 232 2334 468999998554
Q ss_pred c
Q 027609 143 S 143 (221)
Q Consensus 143 ~ 143 (221)
.
T Consensus 102 ~ 102 (258)
T PRK14896 102 Q 102 (258)
T ss_pred c
Confidence 3
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0029 Score=58.11 Aligned_cols=124 Identities=17% Similarity=0.235 Sum_probs=84.6
Q ss_pred CCCCCeEEeecCcchHHHHHHhh-CCCeEEEeccCCCC-----CCHHHHHHcCccceec-cccccCCC--CC---CccCe
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKD-LKVWVMNVVPIESP-----DTLPIIYERGLFGLYH-DWCESFNT--YP---RTYDL 135 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~-~~v~vmnv~~~d~~-----~~l~~a~eRGl~~~~~-d~~e~f~~--yp---~sFDl 135 (221)
.+.--+||||-||.|.+.-..+. .+.-..++.-.|.+ .-.+.+.+|||.+++. .-..+|.. |. -..+|
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 45677899999999987655443 33212244444432 2456899999976521 11123332 32 55799
Q ss_pred eeeccccccccc-c-HHHHHHHhhhhccCCeEEEEEc--ChhhHHHHHHHHHh----cCCeEEE
Q 027609 136 LHADHLFSTIKK-S-LKAVVAEVDRILRPDGNLILRD--DAETIVEVEDLVKS----LHWDVRM 191 (221)
Q Consensus 136 Vh~~~v~~h~~~-d-~~~vL~EmdRVLRPGG~~ii~d--~~~~~~~i~~i~~~----l~W~~~~ 191 (221)
+..+.++..+++ + ....|.-+.++|.|||++|.+- -|+.++.|...+.+ --|-.+-
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRr 276 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRR 276 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEe
Confidence 999999998886 3 3346888999999999999997 57778888877766 4687654
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0043 Score=54.33 Aligned_cols=43 Identities=16% Similarity=0.057 Sum_probs=33.4
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
..+..+|||+|||+|.++..|++++.. ++.+|.+ ++++.+.++
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKL 70 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHH
Confidence 345789999999999999999998643 5677765 477776655
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0034 Score=55.15 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=81.5
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc---e-e-ccccccCCC-CCCccCee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG---L-Y-HDWCESFNT-YPRTYDLL 136 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~-~d~~e~f~~-yp~sFDlV 136 (221)
...++||.+|.+.|-=+..|+.. +- -..++.+|.. ++.+.|++. |+-. . . .|+-+-++- ...+||+|
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 35899999999999766666543 11 1146777764 455555443 5433 2 2 265555553 45999999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEcC--------------hhhHHHHHHHHHhcCCe----EEEeecCCCe
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD--------------AETIVEVEDLVKSLHWD----VRMIYTNDNQ 198 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~--------------~~~~~~i~~i~~~l~W~----~~~~~~~~~e 198 (221)
.-..- +.+-..++.+.-+.|||||.+|+... .....+++....-+.++ ..+.- -++
T Consensus 137 FIDad----K~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP--~gD 210 (219)
T COG4122 137 FIDAD----KADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLP--LGD 210 (219)
T ss_pred EEeCC----hhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEe--cCC
Confidence 86643 33445888999999999999998832 12234455555555554 32221 347
Q ss_pred eEEEEEec
Q 027609 199 GMLCVHKT 206 (221)
Q Consensus 199 ~~l~~~K~ 206 (221)
+++++.|.
T Consensus 211 Gl~v~~k~ 218 (219)
T COG4122 211 GLLLSRKR 218 (219)
T ss_pred ceEEEeec
Confidence 88888885
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.005 Score=56.83 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=67.5
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHH----c-Cccc---eec--cccccCCC--CC-Cc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYE----R-GLFG---LYH--DWCESFNT--YP-RT 132 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~e----R-Gl~~---~~~--d~~e~f~~--yp-~s 132 (221)
.+...+|||+|||+|.++..|..+ ..| +++++|.+ ..++.|.+ . ++.+ +.+ +....|.. .+ ..
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCCCceEEEecCCccHHHHHHHhhCCCC--EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCc
Confidence 445688999999999988888665 234 46777774 35554443 2 3422 111 11111222 24 68
Q ss_pred cCeeeecccccccccc----HHHHHHH----------------hhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEe
Q 027609 133 YDLLHADHLFSTIKKS----LKAVVAE----------------VDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 133 FDlVh~~~v~~h~~~d----~~~vL~E----------------mdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~ 192 (221)
||+|.|+==|..-.+. -..-... ....+-+||-+-+-... +.+-..+++...|=+.+.
T Consensus 190 fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~m--i~eS~~~~~~~gwftsmv 267 (321)
T PRK11727 190 FDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRM--IEESKAFAKQVLWFTSLV 267 (321)
T ss_pred eEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHh--hHHHHHHHhhCcEEEEEe
Confidence 9999998444311100 0111111 12445588887666543 444467778888876654
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.016 Score=51.99 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=71.4
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc--Cccceecc-ccccCCC--CC-CccCeeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER--GLFGLYHD-WCESFNT--YP-RTYDLLHA 138 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR--Gl~~~~~d-~~e~f~~--yp-~sFDlVh~ 138 (221)
....-++|||+|||+|+-.-+..+. + ..-.++.+|.+ .|++++..= ........ |-..+.. -+ ...|||.+
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~ 108 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIA 108 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEE
Confidence 3446789999999999755555442 2 23356788876 477654331 12221111 1111111 12 34499999
Q ss_pred ccccccccc-cHHHHHHHhhhhccCCeEEEEEcCh-----hhHHHHHHHHHhcCCeEEEe
Q 027609 139 DHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 139 ~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~-----~~~~~i~~i~~~l~W~~~~~ 192 (221)
+.+|..+.+ ....++..+-+-+. +++||-|+- ..+.++.+.+....+.+..+
T Consensus 109 s~~L~EL~~~~r~~lv~~LW~~~~--~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~AP 166 (274)
T PF09243_consen 109 SYVLNELPSAARAELVRSLWNKTA--PVLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAP 166 (274)
T ss_pred ehhhhcCCchHHHHHHHHHHHhcc--CcEEEEcCCChHHHHHHHHHHHHHhhCCCceECC
Confidence 999998874 34444444433344 488888752 34677777776666666544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0028 Score=57.62 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=44.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc---cceeccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL---FGLYHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl---~~~~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|++++. .++.+|.+ ++++.+.++ |+ +.+++. .+..++ ..||+|.++-
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~---Dal~~~~~~~d~VvaNl 109 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEG---DALKTEFPYFDVCVANV 109 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC---CHhhhcccccCEEEecC
Confidence 467899999999999999998764 35777775 477776654 21 123331 222344 6789998874
Q ss_pred cc
Q 027609 141 LF 142 (221)
Q Consensus 141 v~ 142 (221)
-.
T Consensus 110 PY 111 (294)
T PTZ00338 110 PY 111 (294)
T ss_pred Cc
Confidence 33
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.012 Score=51.90 Aligned_cols=137 Identities=16% Similarity=0.141 Sum_probs=81.3
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCC-CCHHHHHHcCcc-----------ceec-cccccCCCCCC-c
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP-DTLPIIYERGLF-----------GLYH-DWCESFNTYPR-T 132 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~-~~l~~a~eRGl~-----------~~~~-d~~e~f~~yp~-s 132 (221)
..+.++||=+|-|.|+.+..|++.+ +. +++.++.. ..++++++- +. .+++ |-.+-+...++ +
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~--~i~~VEiD~~Vv~~a~~~-f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVE--SITVVEIDPEVVELARKY-FPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-S--EEEEEES-HHHHHHHHHH-THHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcc--eEEEEecChHHHHHHHHh-chhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 3369999999999999999999886 43 34444443 366666553 11 1222 21111223455 9
Q ss_pred cCeeeeccccccccc---cHHHHHHHhhhhccCCeEEEEEcC-----hhhHHHHHHHHHhcCCeEEEee------cCCCe
Q 027609 133 YDLLHADHLFSTIKK---SLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMIY------TNDNQ 198 (221)
Q Consensus 133 FDlVh~~~v~~h~~~---d~~~vL~EmdRVLRPGG~~ii~d~-----~~~~~~i~~i~~~l~W~~~~~~------~~~~e 198 (221)
||+|.....-..... --..++..+.|.|+|||.+++.-. ......+.+.+++..-.+.... .+..=
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~ 230 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWW 230 (246)
T ss_dssp EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEE
T ss_pred ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccce
Confidence 999987633211110 125889999999999999998732 2345666666777777665432 11223
Q ss_pred eEEEEEecc
Q 027609 199 GMLCVHKTY 207 (221)
Q Consensus 199 ~~l~~~K~~ 207 (221)
.+.+|.|..
T Consensus 231 ~~~~~s~~~ 239 (246)
T PF01564_consen 231 SFASASKDI 239 (246)
T ss_dssp EEEEEESST
T ss_pred eEEEEeCCC
Confidence 567777754
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0053 Score=52.08 Aligned_cols=99 Identities=12% Similarity=0.032 Sum_probs=56.4
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCC-C-C-ccCeeee
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTY-P-R-TYDLLHA 138 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~y-p-~-sFDlVh~ 138 (221)
..+|||++||+|+++..++++++. .++.+|.+ ..++.+.+. |+.+ ++ .|.-+.+..+ . . .||+|..
T Consensus 50 g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 578999999999999999999864 36777764 355544332 3321 12 2321111112 1 2 4788876
Q ss_pred ccccc-cccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 139 DHLFS-TIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 139 ~~v~~-h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.==+. .+....-..+ .-..+|+++|.+|+....
T Consensus 128 DPPy~~~~~~~~l~~l-~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFNGALQALLELC-ENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCCCCcHHHHHHHH-HHCCCCCCCeEEEEEecC
Confidence 53332 1111222222 225689999988887543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0084 Score=54.22 Aligned_cols=60 Identities=15% Similarity=0.402 Sum_probs=47.1
Q ss_pred CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEE--------cC-------h-hhHHHHHHHHHhcCCeEEE
Q 027609 131 RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILR--------DD-------A-ETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~--------d~-------~-~~~~~i~~i~~~l~W~~~~ 191 (221)
++||.|.+. -|...-.|..+.|..|.++|||||++|=- +. . -..++|..+++++.|+...
T Consensus 164 ~~~d~VvT~-FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 164 GSFDVVVTC-FFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CcccEEEEE-EEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 499998876 55555559999999999999999977643 21 1 1279999999999999854
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.011 Score=55.17 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=71.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccce-eccc-cccCCCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGL-YHDW-CESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~-~~d~-~e~f~~yp-~sFDlVh~~~v 141 (221)
.+.+|||==||||||.-..-=-|+ ++++.|.. .|++-|... |+.+. +..- -....+++ ++||-|.|.-=
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPP 273 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPP 273 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCC
Confidence 356899999999999776633343 56888886 476655443 11121 1111 11234588 77999988621
Q ss_pred c---cccc-----ccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE
Q 027609 142 F---STIK-----KSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 142 ~---~h~~-----~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
. +-+. +-...+|.++.+||++||++++--+.......+ .+.+++.
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~----~~~f~v~ 326 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELE----ELGFKVL 326 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHh----hcCceEE
Confidence 1 1111 125789999999999999999987754444443 4555554
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0035 Score=54.29 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=61.1
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCC-CCCHHHHHHcC--ccceeccccccCCCCCCccCeeeeccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIES-PDTLPIIYERG--LFGLYHDWCESFNTYPRTYDLLHADHLFSTI 145 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~-~~~l~~a~eRG--l~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~ 145 (221)
-..+.|+|+|||+|.|+-..+-.|... |.++|. +++++++.+.. +.|-+-=.+...+.|..-||.+..+==|--+
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~--V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~ 121 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASR--VLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQ 121 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcE--EEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccc
Confidence 357789999999998877766666543 567776 35666655442 2221111122345577889988776444322
Q ss_pred cc--cHHHHHHHhhhhccCCeEEEEEcC-hhhHHHHHHHHHhcCCeE
Q 027609 146 KK--SLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 146 ~~--d~~~vL~EmdRVLRPGG~~ii~d~-~~~~~~i~~i~~~l~W~~ 189 (221)
.+ |... |.-.-++- -+|.|=+ ....+-+++.+....-.+
T Consensus 122 ~rhaDr~F-l~~Ale~s----~vVYsiH~a~~~~f~~~~~~~~G~~v 163 (198)
T COG2263 122 RRHADRPF-LLKALEIS----DVVYSIHKAGSRDFVEKFAADLGGTV 163 (198)
T ss_pred cccCCHHH-HHHHHHhh----heEEEeeccccHHHHHHHHHhcCCeE
Confidence 21 4432 22222222 2333322 223455666666665433
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0025 Score=56.17 Aligned_cols=92 Identities=23% Similarity=0.281 Sum_probs=55.1
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCC-CCCHHHHH----------------HcCccc-eeccccccCCCCC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIES-PDTLPIIY----------------ERGLFG-LYHDWCESFNTYP 130 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~-~~~l~~a~----------------eRGl~~-~~~d~~e~f~~yp 130 (221)
..-+.||+|.|+|-+++.+.-. +....|..+++. ++.++.+. ++|-+. ++.| |- + -|+
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD-gr-~-g~~ 158 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD-GR-K-GYA 158 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC-cc-c-cCC
Confidence 3778999999999887765422 223334466665 34444332 333222 2334 21 1 244
Q ss_pred --CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 131 --RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 131 --~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+.||-|||...-+ .+.+|+--.|+|||.+++---
T Consensus 159 e~a~YDaIhvGAaa~-------~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 159 EQAPYDAIHVGAAAS-------ELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred ccCCcceEEEccCcc-------ccHHHHHHhhccCCeEEEeec
Confidence 9999999985544 333455567889988887643
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.082 Score=46.38 Aligned_cols=136 Identities=20% Similarity=0.272 Sum_probs=80.1
Q ss_pred hhhhhhHHHHHhhhhhccc-CCCCCCCeEEeecCcchH--HHHHHhhCCCeEEEeccCCCC----CCHH-HHHHcCccc-
Q 027609 47 ADYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGG--FAAALKDLKVWVMNVVPIESP----DTLP-IIYERGLFG- 117 (221)
Q Consensus 47 ~d~~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G~--faa~L~~~~v~vmnv~~~d~~----~~l~-~a~eRGl~~- 117 (221)
...+.|.+|+-.+ ..... +... ..+++|+|+|.|- .--++...+.. ++-+|.. ..|+ ++.+=||.+
T Consensus 45 ~~~e~~~rHilDS-l~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~~~---vtLles~~Kk~~FL~~~~~eL~L~nv 119 (215)
T COG0357 45 DPEELWQRHILDS-LVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPDLK---VTLLESLGKKIAFLREVKKELGLENV 119 (215)
T ss_pred CHHHHHHHHHHHH-hhhhhccccc-CCEEEEeCCCCCCchhhHHHhccCCc---EEEEccCchHHHHHHHHHHHhCCCCe
Confidence 4467888877441 11111 1111 5899999999993 33334444433 4555542 2443 555667754
Q ss_pred -eeccccccCCCCCCc-cCeeeeccccccccccHHHHHHHhhhhccCCeEEE---EEcChhhHHHHHHHHHhcCCeEEEe
Q 027609 118 -LYHDWCESFNTYPRT-YDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLI---LRDDAETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 118 -~~~d~~e~f~~yp~s-FDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~i---i~d~~~~~~~i~~i~~~l~W~~~~~ 192 (221)
+++.-.|.|..- .. ||+|.|-. +. +...++.=....||+||.++ +.-..+.+.+.+.-.....+.+...
T Consensus 120 ~i~~~RaE~~~~~-~~~~D~vtsRA-va----~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 120 EIVHGRAEEFGQE-KKQYDVVTSRA-VA----SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred EEehhhHhhcccc-cccCcEEEeeh-cc----chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 566655644421 23 99998864 43 23344444568999989874 3344556777777788888887654
Q ss_pred e
Q 027609 193 Y 193 (221)
Q Consensus 193 ~ 193 (221)
.
T Consensus 194 ~ 194 (215)
T COG0357 194 F 194 (215)
T ss_pred E
Confidence 3
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0068 Score=51.96 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=71.2
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccce------eccccccCCCCC-CccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGL------YHDWCESFNTYP-RTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~------~~d~~e~f~~yp-~sFDlVh 137 (221)
|++.+...||.+|.|+|-|+.+++++++.--+++.++.+ +....-.++ .++. ..+.-.-+.-++ .-||.|.
T Consensus 44 I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-~p~~~ii~gda~~l~~~l~e~~gq~~D~vi 122 (194)
T COG3963 44 IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-YPGVNIINGDAFDLRTTLGEHKGQFFDSVI 122 (194)
T ss_pred cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-CCCccccccchhhHHHHHhhcCCCeeeeEE
Confidence 788889999999999999999999998765566777664 443333332 3321 111111122356 8999999
Q ss_pred eccccccccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 138 ADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 138 ~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|.-=+-.++- --..+|.+..--|++||-++--.
T Consensus 123 S~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 123 SGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred eccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 9854443332 45678888888999999998653
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0092 Score=53.12 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=72.0
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCc------cceeccccccCCCCC-CccCeeeeccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGL------FGLYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl------~~~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
.+.++||.||-|.|-.+..+-+++.- -...--..++.++..++-|- +-.-.-|-..+++.| +.||-|.-...
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 57899999999999888888777531 12222223456776666663 223455666677888 99999998744
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
-.|+. |.-.+-+-+-|+|||||.+-+-.
T Consensus 179 ~e~yE-dl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 179 SELYE-DLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhHHH-HHHHHHHHHhhhcCCCceEEEec
Confidence 36666 78888889999999999987763
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0051 Score=57.87 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=59.8
Q ss_pred CCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc--eec-cccccCCCCCCccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG--LYH-DWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~-d~~e~f~~yp~sFDlVh~~~v 141 (221)
..+|||++||+|.++..++.. ++ -.|+.+|.+ +.++.+.+. |+.. +++ |. +.+..-.+.||+|..+-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da-~~~l~~~~~fD~V~lDP- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA-NALLHEERKFDVVDIDP- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH-HHHHhhcCCCCEEEECC-
Confidence 357999999999999998764 42 246777764 466655443 3322 222 32 21211146799999863
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+ - .+..+|...-+.+||||+++++
T Consensus 134 ~---G-s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 134 F---G-SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C---C-CcHHHHHHHHHHhcCCCEEEEE
Confidence 3 2 5567777767889999999999
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.016 Score=53.48 Aligned_cols=98 Identities=7% Similarity=0.022 Sum_probs=59.8
Q ss_pred CCeEEeecCcchHHHHHHhh----CCCeEEEeccCCCC-CCHHHHHHcCc----cce-eccccccC-------CC--CCC
Q 027609 71 VRNVMDMRAVYGGFAAALKD----LKVWVMNVVPIESP-DTLPIIYERGL----FGL-YHDWCESF-------NT--YPR 131 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~----~~v~vmnv~~~d~~-~~l~~a~eRGl----~~~-~~d~~e~f-------~~--yp~ 131 (221)
...++|+|||.|.=++.|++ .+.. ...+|+|.+ ++|+.+.++-- +.+ ++..|..| +. .+.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~-~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKS-VDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCC-ceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 44799999999986554433 2222 257999998 48887766521 111 11111111 11 122
Q ss_pred ccCeeee-ccccccccc-cHHHHHHHhhh-hccCCeEEEEE
Q 027609 132 TYDLLHA-DHLFSTIKK-SLKAVVAEVDR-ILRPDGNLILR 169 (221)
Q Consensus 132 sFDlVh~-~~v~~h~~~-d~~~vL~EmdR-VLRPGG~~ii~ 169 (221)
...++.. ...|..+.. .-..+|.++.+ .|+|||.++|.
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 3444443 345555553 56688999999 99999999998
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.012 Score=51.38 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=36.8
Q ss_pred HHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE--Ee-e----------cCCCeeEEEEEec
Q 027609 149 LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR--MI-Y----------TNDNQGMLCVHKT 206 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~--~~-~----------~~~~e~~l~~~K~ 206 (221)
...++.|+.|||||||.+++--....+..+...+....|... +. + ....|-++++.|.
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~~~IiW~K~~~~~~~~~~~~~E~i~~~~k~ 121 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYILAKG 121 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEeeEEEEECCCCCCCCCCccceeEEEEEECC
Confidence 357899999999999999874333334445555566666543 11 1 1224777777775
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0096 Score=52.54 Aligned_cols=96 Identities=19% Similarity=0.258 Sum_probs=52.8
Q ss_pred eEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----------C-c--cceeccccccCCCCCCccCeee
Q 027609 73 NVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----------G-L--FGLYHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----------G-l--~~~~~d~~e~f~~yp~sFDlVh 137 (221)
.+-|+|||+|||...|... +-+ -+.+.+.. +..+.+.+| | + +++++.-|--|. ||-|-.-.
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdt--LiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l--pn~f~kgq 138 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDT--LILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL--PNFFEKGQ 138 (249)
T ss_pred eEEeeccCccchhhhccccCccc--eeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc--cchhhhcc
Confidence 4789999999999999876 222 23444442 123333333 1 1 334443222222 44444333
Q ss_pred ecccccccc-----c-------cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 138 ADHLFSTIK-----K-------SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 138 ~~~v~~h~~-----~-------d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.+-.|.-.+ . ---..+.|..=+||+||.++..++.
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 332232122 1 1135788999999999999877543
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.012 Score=52.32 Aligned_cols=132 Identities=11% Similarity=0.106 Sum_probs=74.0
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHH----HHcCccc----eeccccccCCC------CCC
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPII----YERGLFG----LYHDWCESFNT------YPR 131 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a----~eRGl~~----~~~d~~e~f~~------yp~ 131 (221)
...-++||.+|+++|--+.+|+.. +. -..++.++.. +..++| .+-|+.. ...+..+.++. +++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~-~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPE-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 445789999999999665555542 11 1134555543 344433 4445432 12333332222 246
Q ss_pred ccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh--------------hhH----HHH----HHHHHhcCCeE
Q 027609 132 TYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA--------------ETI----VEV----EDLVKSLHWDV 189 (221)
Q Consensus 132 sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~--------------~~~----~~i----~~i~~~l~W~~ 189 (221)
+||+|....- +.+....+...-+.|||||.+++.+.. ... ..| +.+...-++.+
T Consensus 156 ~fD~iFiDad----K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~ 231 (247)
T PLN02589 156 TFDFIFVDAD----KDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEI 231 (247)
T ss_pred cccEEEecCC----HHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEE
Confidence 9999987743 224445666667999999999887420 111 112 23344556666
Q ss_pred EEeecCCCeeEEEEEec
Q 027609 190 RMIYTNDNQGMLCVHKT 206 (221)
Q Consensus 190 ~~~~~~~~e~~l~~~K~ 206 (221)
.+..- ++++++++|.
T Consensus 232 ~llPi--gDGl~l~~k~ 246 (247)
T PLN02589 232 CMLPV--GDGITLCRRI 246 (247)
T ss_pred EEEEe--CCccEEEEEe
Confidence 55432 4678888874
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.016 Score=54.65 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=70.8
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cc-------cceeccccccCCCCCCccCee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GL-------FGLYHDWCESFNTYPRTYDLL 136 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl-------~~~~~d~~e~f~~yp~sFDlV 136 (221)
....|.|||+|||+|-+...-+..|+. .|..+++++|.+.|+.- .+ +|-+.| . -.|...|+|
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEd----i-eLPEk~Dvi 247 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEASEMAQYARKLVASNNLADRITVIPGKIED----I-ELPEKVDVI 247 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcc--eEEEEehhHHHHHHHHHHhcCCccceEEEccCcccc----c-cCchhccEE
Confidence 457899999999999866655555654 46788888888866432 01 122222 1 258999999
Q ss_pred eecccccccc-ccHHHHHHHhhhhccCCeEEEEE--cCh--h---hHHHHHHHHHhcCCeEE
Q 027609 137 HADHLFSTIK-KSLKAVVAEVDRILRPDGNLILR--DDA--E---TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 137 h~~~v~~h~~-~d~~~vL~EmdRVLRPGG~~ii~--d~~--~---~~~~i~~i~~~l~W~~~ 190 (221)
.+.-.--.+- +-+-.--.-.+|-|+|.|...=+ |.+ + ..--++..-|++-|--.
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq 309 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQ 309 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhh
Confidence 8763222122 12222223356999999988644 221 2 23346777788888654
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.056 Score=45.39 Aligned_cols=119 Identities=16% Similarity=0.227 Sum_probs=65.6
Q ss_pred CCCCCeEEeecCcchHHHH--HHhhCCCe------EEEeccCCCC-CCHHHHHHc----Cccc---eec-cccccCCCCC
Q 027609 68 WSFVRNVMDMRAVYGGFAA--ALKDLKVW------VMNVVPIESP-DTLPIIYER----GLFG---LYH-DWCESFNTYP 130 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa--~L~~~~v~------vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~-d~~e~f~~yp 130 (221)
+.....|||-=||+|+|.. ++...++. ...+.+.|.. ++++.+.+. |+.+ ... |. ..++..+
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~-~~l~~~~ 104 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA-RELPLPD 104 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G-GGGGGTT
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch-hhccccc
Confidence 3446789999999999884 34444332 1125677775 466665544 3322 222 32 2243234
Q ss_pred CccCeeeecccccc---c----cccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEE
Q 027609 131 RTYDLLHADHLFST---I----KKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 131 ~sFDlVh~~~v~~h---~----~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~ 191 (221)
+++|.|.|+-=+-. . ..-...++.|+.|+|+|...+++.....+ ++.+....|+...
T Consensus 105 ~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~~~ 168 (179)
T PF01170_consen 105 GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRKRK 168 (179)
T ss_dssp SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEEEE
T ss_pred CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhceEE
Confidence 89999999833321 0 11234678999999999666666665533 4444445777653
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0056 Score=55.98 Aligned_cols=70 Identities=19% Similarity=0.136 Sum_probs=46.7
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-----cceeccccccCCCC-CC---ccCeeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-----FGLYHDWCESFNTY-PR---TYDLLHA 138 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-----~~~~~d~~e~f~~y-p~---sFDlVh~ 138 (221)
.....++|++||.|+++.++++..-....|.++|.+ ++++.+.++ + +-.+|+....+..+ +. +||.|.+
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~-L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~ 96 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR-LKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILL 96 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh-hccCCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence 345689999999999999999873112357999986 699988876 3 22344322222222 22 7898877
Q ss_pred c
Q 027609 139 D 139 (221)
Q Consensus 139 ~ 139 (221)
.
T Consensus 97 D 97 (296)
T PRK00050 97 D 97 (296)
T ss_pred C
Confidence 6
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0043 Score=56.43 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=63.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHc----Ccc-c----eeccccccCCCC--CCccCeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYER----GLF-G----LYHDWCESFNTY--PRTYDLLH 137 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eR----Gl~-~----~~~d~~e~f~~y--p~sFDlVh 137 (221)
..++|||+=|-+|+|+.+.+..|+. .|+.+|.++ .++.+.+. |+. . +.+|.-+.+.-. .+.||+|.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 3679999999999999988777764 467888874 77766665 332 1 112311101001 27899998
Q ss_pred ec-ccccc----ccccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 138 AD-HLFST----IKKSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 138 ~~-~v~~h----~~~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
+. =.|.. ...+...++.-.-++|+|||+++++.+..
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 76 23321 12266778888899999999999887653
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.0074 Score=52.14 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=50.7
Q ss_pred CCCeEEeecCcchHHHHHHhh--CCCeEEEeccCCCC-C----CHHHHHHcCccc---ee-ccccccCCCCCCccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKD--LKVWVMNVVPIESP-D----TLPIIYERGLFG---LY-HDWCESFNTYPRTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~--~~v~vmnv~~~d~~-~----~l~~a~eRGl~~---~~-~d~~e~f~~yp~sFDlVh~ 138 (221)
....|+||-||.|.|+-.+++ ++.. |.+.|.. + +.+-+...++-+ .+ .| |..+.. ...||-|.+
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~---V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D-~~~~~~-~~~~drvim 175 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKR---VYAVDLNPDAVEYLKENIRLNKVENRIEVINGD-AREFLP-EGKFDRVIM 175 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSE---EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES--GGG----TT-EEEEEE
T ss_pred cceEEEEccCCccHHHHHHhhhcCccE---EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCC-HHHhcC-ccccCEEEE
Confidence 378999999999999999888 4433 4555542 2 223333334433 22 34 333443 589997776
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEE
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLI 167 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~i 167 (221)
+ ++..-..+|.+..+++|+||++.
T Consensus 176 ~-----lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 176 N-----LPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred C-----ChHHHHHHHHHHHHHhcCCcEEE
Confidence 5 34333468888999999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.13 Score=45.70 Aligned_cols=98 Identities=18% Similarity=0.300 Sum_probs=61.2
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC----C-CeEEEeccCCCCCCHHHHHHcC-ccceeccccccCCCCC---CccCeeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL----K-VWVMNVVPIESPDTLPIIYERG-LFGLYHDWCESFNTYP---RTYDLLHA 138 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~----~-v~vmnv~~~d~~~~l~~a~eRG-l~~~~~d~~e~f~~yp---~sFDlVh~ 138 (221)
-....+||-+|+.+|+...++.+- | |..+...|....+.+.+|..|- ++.++.|...+- .|. ...|+|.|
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~-~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPE-KYRMLVEMVDVIFQ 149 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGG-GGTTTS--EEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChH-HhhcccccccEEEe
Confidence 345789999999999988877653 3 2333334443346788898885 355777743211 142 68888888
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
. +-+ ++.-.-++.=++.-||+||++++.
T Consensus 150 D-VaQ--p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 150 D-VAQ--PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp E--SS--TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c-CCC--hHHHHHHHHHHHhhccCCcEEEEE
Confidence 6 222 223456666777899999999988
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.063 Score=47.22 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=64.7
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhC-C--CeEEEeccCCCC--------CCHHHHHHcCccc--eec-cccccCCCCCC
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDL-K--VWVMNVVPIESP--------DTLPIIYERGLFG--LYH-DWCESFNTYPR 131 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~-~--v~vmnv~~~d~~--------~~l~~a~eRGl~~--~~~-d~~e~f~~yp~ 131 (221)
++. ..+|.|+=-|.|-|++-|... + ..|.+++|.+.. .+-.+++|.++-+ .+. +.- ++. -|.
T Consensus 46 lkp--g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~-A~~-~pq 121 (238)
T COG4798 46 LKP--GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLV-ALG-APQ 121 (238)
T ss_pred cCC--CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccc-ccC-CCC
Confidence 555 788999999999999988765 1 267788887761 1223444444322 111 110 111 126
Q ss_pred ccCeeeeccccccc------cccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 132 TYDLLHADHLFSTI------KKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 132 sFDlVh~~~v~~h~------~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
-.|++..++..+.. ...-..+-.++.+.|||||.+.+-|+.
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 66666554333311 227789999999999999999998764
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.027 Score=52.96 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=62.1
Q ss_pred CeEEeecCcchHHHHHHhhC--CCeEEEeccCCCC-CCHHHHHHc----Ccc--ceec-cccccCCCC-CCccCeeeecc
Q 027609 72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESP-DTLPIIYER----GLF--GLYH-DWCESFNTY-PRTYDLLHADH 140 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~--~v~vmnv~~~d~~-~~l~~a~eR----Gl~--~~~~-d~~e~f~~y-p~sFDlVh~~~ 140 (221)
-+|||+-||+|.++...+.+ |+. .|+..|.+ +.++.+.+. ++. .+++ |. ..+... ...||+|...-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~--~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da-~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVR--EVFANDINPKAVESIKNNVEYNSVENIEVPNEDA-ANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhH-HHHHHHhCCCCCEEEeCC
Confidence 47999999999999999887 442 46777764 455555443 221 1232 32 112112 26799998864
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
| . .+..++...-+.+++||+++++
T Consensus 123 -f---G-s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 -F---G-TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -C---C-CcHHHHHHHHHhcccCCEEEEE
Confidence 4 3 5678999999999999999999
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.0053 Score=54.49 Aligned_cols=90 Identities=14% Similarity=0.228 Sum_probs=62.4
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHcCcccee--ccccccCCCCCCccCeeeeccccccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGLFGLY--HDWCESFNTYPRTYDLLHADHLFSTIKK 147 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eRGl~~~~--~d~~e~f~~yp~sFDlVh~~~v~~h~~~ 147 (221)
-.++||+|+|-|-++..++.. .-.|.+.+.+. |......++. .++ -+|.+ =+=.||+|.|-.++..--
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~y-nVl~~~ew~~----t~~k~dli~clNlLDRc~- 183 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKNY-NVLTEIEWLQ----TDVKLDLILCLNLLDRCF- 183 (288)
T ss_pred CeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcCC-ceeeehhhhh----cCceeehHHHHHHHHhhc-
Confidence 578999999999998877543 11245555553 6655555544 122 23432 013499999987775333
Q ss_pred cHHHHHHHhhhhccC-CeEEEEE
Q 027609 148 SLKAVVAEVDRILRP-DGNLILR 169 (221)
Q Consensus 148 d~~~vL~EmdRVLRP-GG~~ii~ 169 (221)
+|...|.+++-||+| .|.+|+.
T Consensus 184 ~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 184 DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ChHHHHHHHHHHhccCCCcEEEE
Confidence 799999999999999 9999988
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.26 Score=42.87 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=69.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-----CCHHHHHHcCc-cc-eeccccccCCCCCCccCeeeecc--
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-----DTLPIIYERGL-FG-LYHDWCESFNTYPRTYDLLHADH-- 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-----~~l~~a~eRGl-~~-~~~d~~e~f~~yp~sFDlVh~~~-- 140 (221)
....+|++|||+|-..+.|++.-..-.-...+|.. -+++-|.-.+. +. +..|....+. +++-|++.-+-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--NESVDVLVFNPPY 120 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--cCCccEEEECCCc
Confidence 36779999999999999888762211112455542 25555554442 22 2233322222 25555544332
Q ss_pred ------------ccccccc--c----HHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEEEee
Q 027609 141 ------------LFSTIKK--S----LKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIY 193 (221)
Q Consensus 141 ------------v~~h~~~--d----~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~~~~ 193 (221)
.-+-|.. | ...+|.-+.-||-|-|.+++-.... ...+|-+++++-.|.+++..
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEE
Confidence 1112221 1 3455666777889999998875543 24566667888889887553
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.2 Score=44.94 Aligned_cols=133 Identities=22% Similarity=0.274 Sum_probs=74.1
Q ss_pred CCCeEEeecCcch--HHHHHHhhCCCeEEEeccCCCCC---CHHHHHHcCccc----------eeccccccCCC--CCCc
Q 027609 70 FVRNVMDMRAVYG--GFAAALKDLKVWVMNVVPIESPD---TLPIIYERGLFG----------LYHDWCESFNT--YPRT 132 (221)
Q Consensus 70 ~~r~VLD~GcG~G--~faa~L~~~~v~vmnv~~~d~~~---~l~~a~eRGl~~----------~~~d~~e~f~~--yp~s 132 (221)
+..|||.+|+|+| |.++++... .+++-.|.+. .++.+.+++.+. ..-+|.++... ++..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~----~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG----AEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc----ceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 5789999999998 444454332 1455555542 333333332211 12367665433 4433
Q ss_pred -cCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh--hhHHHHHHHHHh--cCC-eEEEe-ecCCCeeEEEEEe
Q 027609 133 -YDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA--ETIVEVEDLVKS--LHW-DVRMI-YTNDNQGMLCVHK 205 (221)
Q Consensus 133 -FDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~--~~~~~i~~i~~~--l~W-~~~~~-~~~~~e~~l~~~K 205 (221)
||+|.+++|+-+.. .++.++.=|.-.|--+|.+++.... +...+++.+... +.+ ++... .+++++-+.+.++
T Consensus 162 ~~DlilasDvvy~~~-~~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~ 240 (248)
T KOG2793|consen 162 PFDLILASDVVYEEE-SFEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLLFKKDLKIFDVVQESFFKDQESFRIGRH 240 (248)
T ss_pred cccEEEEeeeeecCC-cchhHHHHHHHHHhcCCeEEEEEecccchHHHHHHHHhhhhhccceeeeEeccCcceeeeeeee
Confidence 99999999996655 6777777777788888866665332 113344443322 222 22221 2344566666655
Q ss_pred cc
Q 027609 206 TY 207 (221)
Q Consensus 206 ~~ 207 (221)
+.
T Consensus 241 ~~ 242 (248)
T KOG2793|consen 241 TV 242 (248)
T ss_pred Ee
Confidence 43
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.0055 Score=46.12 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=34.1
Q ss_pred EeecCcchHHHHHHhhC--CCeEEEeccCCCC----CCHHHHHHcCcccee---c-cccccCCCCC-CccCeeeeccccc
Q 027609 75 MDMRAVYGGFAAALKDL--KVWVMNVVPIESP----DTLPIIYERGLFGLY---H-DWCESFNTYP-RTYDLLHADHLFS 143 (221)
Q Consensus 75 LD~GcG~G~faa~L~~~--~v~vmnv~~~d~~----~~l~~a~eRGl~~~~---~-d~~e~f~~yp-~sFDlVh~~~v~~ 143 (221)
|.+|+..|..+..|++. ......+..+|.. ...+.+.+.++...+ . +-.+.++.++ +.||+++-.. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 57898899877776553 1000123444432 244444444554322 1 2112233466 8999999874 22
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.+. .....+..+.+.|+|||.+++-|
T Consensus 80 ~~~-~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 SYE-AVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -HH-HHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CHH-HHHHHHHHHHHHcCCCeEEEEeC
Confidence 233 56667788888999999999876
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.075 Score=51.44 Aligned_cols=44 Identities=16% Similarity=0.026 Sum_probs=30.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCC-------eEEEeccCCCC-CCHHHHHHc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKV-------WVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v-------~vmnv~~~d~~-~~l~~a~eR 113 (221)
...+|||-+||+|+|..+++++-. ...++.+.|.. ..++.+..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 356899999999999998876421 23567788875 355555443
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.031 Score=47.36 Aligned_cols=99 Identities=19% Similarity=0.225 Sum_probs=56.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCC--C-CccCee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTY--P-RTYDLL 136 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~y--p-~sFDlV 136 (221)
....+|||+=||+|+++-.-++||+. .++-+|.+ +.+..+.+. |+.. ++ .|....+... . ..||+|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiI 118 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDII 118 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEE
Confidence 35788999999999999999999975 35666654 344444333 2222 11 2321212112 3 899999
Q ss_pred eeccccccccc-c-HHHHHHHhh--hhccCCeEEEEEcCh
Q 027609 137 HADHLFSTIKK-S-LKAVVAEVD--RILRPDGNLILRDDA 172 (221)
Q Consensus 137 h~~~v~~h~~~-d-~~~vL~Emd--RVLRPGG~~ii~d~~ 172 (221)
.++== |.. . ...+|.-+. .+|.++|.+|+-...
T Consensus 119 flDPP---Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 119 FLDPP---YAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp EE--S---TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred EECCC---cccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 88622 222 2 245555554 899999999887543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.063 Score=47.79 Aligned_cols=98 Identities=21% Similarity=0.260 Sum_probs=61.1
Q ss_pred CCCCCCCeEEeecC--cchHHHHHHh-hCCCeEEEeccCCCC-----CCHHHHHHcCc---ccee-ccccccC----CCC
Q 027609 66 INWSFVRNVMDMRA--VYGGFAAALK-DLKVWVMNVVPIESP-----DTLPIIYERGL---FGLY-HDWCESF----NTY 129 (221)
Q Consensus 66 i~~~~~r~VLD~Gc--G~G~faa~L~-~~~v~vmnv~~~d~~-----~~l~~a~eRGl---~~~~-~d~~e~f----~~y 129 (221)
|+--.-++.||+|. |++.++-+|+ ..+.. |+.+|.. -..++..-.|+ +... .+-+|++ ..+
T Consensus 69 i~~~~ak~~lelGvfTGySaL~~Alalp~dGr---v~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~ 145 (237)
T KOG1663|consen 69 IRLLNAKRTLELGVFTGYSALAVALALPEDGR---VVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG 145 (237)
T ss_pred HHHhCCceEEEEecccCHHHHHHHHhcCCCce---EEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC
Confidence 34445789999995 5556665553 22222 3343332 24556666664 2222 2333332 235
Q ss_pred C-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 130 P-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 130 p-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+ +|||++... |+..+-.....|.-|.||+||.+++..
T Consensus 146 ~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 146 ESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 5 999998754 577677799999999999999999884
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.14 Score=45.79 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=24.4
Q ss_pred HHHHHHHhhhhccCCeEEEEEcChhhHHHHHHH
Q 027609 149 LKAVVAEVDRILRPDGNLILRDDAETIVEVEDL 181 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i 181 (221)
...+|.|+.|||||||.+++--....+..+..+
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~~~~~~~~~~~~ 91 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMNSTENMPFIDLY 91 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCchhhhHHHHH
Confidence 367999999999999999987555444434333
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.035 Score=47.56 Aligned_cols=124 Identities=17% Similarity=0.252 Sum_probs=74.1
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC----CCHHHHHHcC----ccce----eccccccCCCCC-Cc
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP----DTLPIIYERG----LFGL----YHDWCESFNTYP-RT 132 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~----~~l~~a~eRG----l~~~----~~d~~e~f~~yp-~s 132 (221)
.+....|.||.+|.|+=++|.-|+...+..-.|--.|.. ..++-+..+. +-.. .+-|.. -+.-. ++
T Consensus 25 ~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a-qsq~eq~t 103 (201)
T KOG3201|consen 25 PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA-QSQQEQHT 103 (201)
T ss_pred hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh-HHHHhhCc
Confidence 344457899999999999999887664433334334442 1333333332 1111 122222 12234 79
Q ss_pred cCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh--hhHHHHHHHHHhcCCeEEE
Q 027609 133 YDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA--ETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 133 FDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~--~~~~~i~~i~~~l~W~~~~ 191 (221)
||+|.|+.|+= +.+.-+..+.-+.+.|||.|..++..+. +.+++...........+..
T Consensus 104 FDiIlaADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 104 FDIILAADCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred ccEEEeccchh-HHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEe
Confidence 99999998863 2223467788888999999998887553 2355555555555555443
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.041 Score=46.86 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=35.1
Q ss_pred CCCCccCeeeecccccccc-----c-----cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 128 TYPRTYDLLHADHLFSTIK-----K-----SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 128 ~yp~sFDlVh~~~v~~h~~-----~-----d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.|+++||.+-|-+++.|.- + -....|.++.|+|||||.++++-+
T Consensus 59 ~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 59 KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred HhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 4889999999988887742 1 224678888999999999999954
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.061 Score=42.71 Aligned_cols=58 Identities=24% Similarity=0.349 Sum_probs=35.5
Q ss_pred ccCeeeeccccc--cccc---cHHHHHHHhhhhccCCeEEEEEcC--------hhhHHHHHHHHHhcCCeE
Q 027609 132 TYDLLHADHLFS--TIKK---SLKAVVAEVDRILRPDGNLILRDD--------AETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 132 sFDlVh~~~v~~--h~~~---d~~~vL~EmdRVLRPGG~~ii~d~--------~~~~~~i~~i~~~l~W~~ 189 (221)
.||+|-|-.+-- |+.. -...++.-|.+.|||||.||+--. ....+.+..-+++++++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP 71 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRP 71 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----G
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEECh
Confidence 389999865542 4443 455689999999999999999732 122455666677777653
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.32 Score=42.72 Aligned_cols=100 Identities=20% Similarity=0.162 Sum_probs=58.7
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHH----HHHcCc-cceeccccccCCCCCCccCeeeec
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPI----IYERGL-FGLYHDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~----a~eRGl-~~~~~d~~e~f~~yp~sFDlVh~~ 139 (221)
-+....++|||.|+|+|--+-+-+..|+. .++..|.. ...+. +...|. +...|.-+ ..=|..||+|.++
T Consensus 75 PetVrgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g~~~~~Dl~Lag 149 (218)
T COG3897 75 PETVRGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IGSPPAFDLLLAG 149 (218)
T ss_pred ccccccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEeeccc---cCCCcceeEEEee
Confidence 35567899999999999544333333432 23444442 22221 222332 44555422 1225999999999
Q ss_pred cccccccc-cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 140 HLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 140 ~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.+|= .+ .-..++.=.+|+...|-.+++.|+.
T Consensus 150 Dlfy--~~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 150 DLFY--NHTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred ceec--CchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 8883 22 2345555556777788888888875
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.093 Score=48.68 Aligned_cols=107 Identities=12% Similarity=0.085 Sum_probs=61.5
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCC------CC--------
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNT------YP-------- 130 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~------yp-------- 130 (221)
+|||++||+|.|+..|++... .|+++|.+ ++++.+.+. |+.. .+ .|.-+.++. ++
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 599999999999998887632 57888875 577777664 3322 12 121110110 10
Q ss_pred -CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEE
Q 027609 131 -RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 131 -~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~ 190 (221)
..||+|..+==-.- -...++. .+++|++.++++=... ....+..+..+ |++.
T Consensus 277 ~~~~d~v~lDPPR~G---~~~~~l~---~l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~ 330 (353)
T TIGR02143 277 SYNCSTIFVDPPRAG---LDPDTCK---LVQAYERILYISCNPETLKANLEQLSET--HRVE 330 (353)
T ss_pred cCCCCEEEECCCCCC---CcHHHHH---HHHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEE
Confidence 12687766511010 1123333 4556899999995554 45566666544 7765
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.37 Score=46.99 Aligned_cols=96 Identities=14% Similarity=0.247 Sum_probs=65.7
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHcCc-----cce-eccccccCCCCC-CccCeeeeccccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGL-----FGL-YHDWCESFNTYP-RTYDLLHADHLFS 143 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eRGl-----~~~-~~d~~e~f~~yp-~sFDlVh~~~v~~ 143 (221)
-++|=+|||-=.+.-.|.+-|-. +|+.+|.+. .+.....++. .-+ ..|- . -..|+ .|||+|..-.-+.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~-~-~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM-D-QLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecc-h-hccCCCcceeEEEecCccc
Confidence 48999999999999999887643 567777753 5555555542 111 1121 1 22477 9999998877776
Q ss_pred cccc---------cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 144 TIKK---------SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 144 h~~~---------d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++-. .-...+.|+.|||+|||.++.-..
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 6543 123457899999999999876654
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.43 Score=46.06 Aligned_cols=102 Identities=22% Similarity=0.330 Sum_probs=62.1
Q ss_pred CCCCCCCeEEeecCcchH---HHHHH-hhCCCeEEEeccCCCC-CCH----HHHHHcCccce---eccccccCC--CCCC
Q 027609 66 INWSFVRNVMDMRAVYGG---FAAAL-KDLKVWVMNVVPIESP-DTL----PIIYERGLFGL---YHDWCESFN--TYPR 131 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~---faa~L-~~~~v~vmnv~~~d~~-~~l----~~a~eRGl~~~---~~d~~e~f~--~yp~ 131 (221)
+++-...+||||=|.+|| +.|+| .+.|+ |.+-|.. +-+ +-+..-|+-++ -+|--| |+ -||.
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~----I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~e-f~~~~~~~ 311 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGV----IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGRE-FPEKEFPG 311 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCce----EEecccchHHHHHHHHHHHHhCCCceEEEccCccc-ccccccCc
Confidence 677789999999999997 44444 44464 3455542 222 23334455443 345322 43 1667
Q ss_pred ccCeee----ecc--ccc------------------cccccHHHHHHHhhhhccCCeEEEEEcChhhH
Q 027609 132 TYDLLH----ADH--LFS------------------TIKKSLKAVVAEVDRILRPDGNLILRDDAETI 175 (221)
Q Consensus 132 sFDlVh----~~~--v~~------------------h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~ 175 (221)
+||=|- |+. +.+ |++ ...|.-.-..+||||++|.|++.=..
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQ---r~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQ---RELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHH---HHHHHHHHhhccCCcEEEEEeeecch
Confidence 999886 665 443 222 34555566789999999999875433
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.11 Score=46.30 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=58.5
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhC------CCeEEEeccCCCC-CCHHHHHHc----Cccce-e-ccccccCCC--C--
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDL------KVWVMNVVPIESP-DTLPIIYER----GLFGL-Y-HDWCESFNT--Y-- 129 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~------~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~-~-~d~~e~f~~--y-- 129 (221)
......+|+|-.||+|+|..++.++ .....++.++|.. .+..++.-+ |.... . -..+..|.. +
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 3445778999999999998887662 0122367788775 355555432 32111 0 001222332 2
Q ss_pred CCccCeeeeccccccc-------------c-------ccHHHHHHHhhhhccCCeEEEEEcChhh
Q 027609 130 PRTYDLLHADHLFSTI-------------K-------KSLKAVVAEVDRILRPDGNLILRDDAET 174 (221)
Q Consensus 130 p~sFDlVh~~~v~~h~-------------~-------~d~~~vL~EmdRVLRPGG~~ii~d~~~~ 174 (221)
...||+|.++-=|... . .....++.-+-+.|++||.+++--+...
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~ 187 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGF 187 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchh
Confidence 2589999877333211 0 0123467779999999998766655443
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.12 Score=47.96 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=62.4
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCC--------------
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTY-------------- 129 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~y-------------- 129 (221)
.+|||++||+|+|+.+|++... .|+++|.+ .+++.+.+. |+.. .+ .|.-+.+..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 4699999999999998887632 46888875 477766654 4322 22 2221111111
Q ss_pred -CCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhh-HHHHHHHHHhcCCeEE
Q 027609 130 -PRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVR 190 (221)
Q Consensus 130 -p~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~-~~~i~~i~~~l~W~~~ 190 (221)
...||+|..+==-.-+ ...++. .+++|++.++++-.... ...+..+.. .|++.
T Consensus 285 ~~~~~D~v~lDPPR~G~---~~~~l~---~l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~ 339 (362)
T PRK05031 285 KSYNFSTIFVDPPRAGL---DDETLK---LVQAYERILYISCNPETLCENLETLSQ--THKVE 339 (362)
T ss_pred cCCCCCEEEECCCCCCC---cHHHHH---HHHccCCEEEEEeCHHHHHHHHHHHcC--CcEEE
Confidence 1148998876111111 133333 44458999999855544 344666553 67765
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.92 Score=42.26 Aligned_cols=106 Identities=20% Similarity=0.277 Sum_probs=63.5
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCC-eEEEeccCCCCC----CHH-HHHHcCccc--e-eccccccCCC-CC--Ccc
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKV-WVMNVVPIESPD----TLP-IIYERGLFG--L-YHDWCESFNT-YP--RTY 133 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v-~vmnv~~~d~~~----~l~-~a~eRGl~~--~-~~d~~e~f~~-yp--~sF 133 (221)
++......||||-+++||=+.+|+..-- ....|++.|.+. .+. -+..-|+.+ + .+|- ..++. ++ ..|
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~-~~~~~~~~~~~~f 230 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA-RRLAELLPGGEKF 230 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc-ccccccccccCcC
Confidence 5566679999999999997777766521 112257888752 232 333335543 2 2331 22332 34 259
Q ss_pred Ceeeec------ccccc-----ccc----------cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 134 DLLHAD------HLFST-----IKK----------SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 134 DlVh~~------~v~~h-----~~~----------d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|-|-+. .++.. |.. --..+|...-++|||||.++.+++.
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 998743 22210 110 2346788889999999999999774
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.17 Score=48.08 Aligned_cols=103 Identities=18% Similarity=0.238 Sum_probs=53.1
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeE-E-EeccCCCCCCHH-HHHH--cCccceeccc-----cccCCCCC--CccC
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWV-M-NVVPIESPDTLP-IIYE--RGLFGLYHDW-----CESFNTYP--RTYD 134 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~v-m-nv~~~d~~~~l~-~a~e--RGl~~~~~d~-----~e~f~~yp--~sFD 134 (221)
....-.+|||+|.|+|+-+-++ .++|- . +++-+..+..+. ++++ +.....-.|| -+..+++| ..|+
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~--n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~yt 187 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWAL--NDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYT 187 (484)
T ss_pred CCcCcchhhccCCCCchhhhhh--cccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceee
Confidence 3456677999999999765554 44541 0 112222232222 1111 1111111122 22233454 8888
Q ss_pred eeeeccccccccc--cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 135 LLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 135 lVh~~~v~~h~~~--d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++...+-+-|-.. .....+.-.--+++|||.++|-+.
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 8876644433221 223344445568999999999974
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.56 Score=40.46 Aligned_cols=118 Identities=20% Similarity=0.284 Sum_probs=68.6
Q ss_pred HHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---eec-cccc
Q 027609 54 NVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LYH-DWCE 124 (221)
Q Consensus 54 ~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~-d~~e 124 (221)
.+|+++--++|.-......++||+=||+|+++..-++||+-. ++-++.+ ...+++.+. |+.+ +++ |-..
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~--~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~ 104 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAAR--VVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR 104 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCce--EEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH
Confidence 356553334443112568899999999999999999999764 4455543 244444443 2212 222 3221
Q ss_pred cCCCCC--CccCeeeeccccc--cccccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 125 SFNTYP--RTYDLLHADHLFS--TIKKSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 125 ~f~~yp--~sFDlVh~~~v~~--h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
.+..-. +.||+|...==|. .+.......+.+=..+|+|+|.+++-...+
T Consensus 105 ~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 105 ALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 122223 3499998874443 111122333334778999999999986543
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.46 E-value=2.7 Score=37.31 Aligned_cols=119 Identities=16% Similarity=0.302 Sum_probs=73.8
Q ss_pred hhhhhhhHHHHHhh---hhhccc-CCCCCCCeEEeecCcchHHHHHHhhC---C-CeEEEeccCCCCCCHHHHHHcC-cc
Q 027609 46 TADYQHWKNVVSKS---YLNGMG-INWSFVRNVMDMRAVYGGFAAALKDL---K-VWVMNVVPIESPDTLPIIYERG-LF 116 (221)
Q Consensus 46 ~~d~~~W~~~v~~~---Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~---~-v~vmnv~~~d~~~~l~~a~eRG-l~ 116 (221)
....+.|.-+-++. -...|. +.-....+||=+|+.+|+...+..+- | +..+.++|.-..+.|.++.+|- ++
T Consensus 48 ~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~ 127 (231)
T COG1889 48 GEEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNII 127 (231)
T ss_pred CcceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCce
Confidence 34567785444432 222333 33345889999999999988877663 4 3444445544456888888885 45
Q ss_pred ceeccccccCCC-CC---CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 117 GLYHDWCESFNT-YP---RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 117 ~~~~d~~e~f~~-yp---~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.++.|. ++|- |. ...|+|.+. +=+ ++.-+-+..-++.-||+||++++.
T Consensus 128 PIL~DA--~~P~~Y~~~Ve~VDviy~D-VAQ--p~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 128 PILEDA--RKPEKYRHLVEKVDVIYQD-VAQ--PNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred eeeccc--CCcHHhhhhcccccEEEEe-cCC--chHHHHHHHHHHHhcccCCeEEEE
Confidence 677773 2221 32 556777765 222 212344556679999999988887
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.19 Score=41.49 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=22.0
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
|.+....++.|+.|||||||.+++--.
T Consensus 31 y~~~~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 31 YLEWMEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHhhcCCCeeEEEEec
Confidence 443678999999999999999988733
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.13 Score=40.18 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=24.4
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHH
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLP 108 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~ 108 (221)
.|||+|||.|.++..++..+.. ..+..++.. .+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~ 36 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYE 36 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHH
Confidence 4899999999999998877432 145666653 3444
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.23 Score=39.72 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=31.0
Q ss_pred CCCCeEEeecCcchHHHHHHhh-----CCCeEEEeccCCCC-CCHHHHHHc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKD-----LKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~-----~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
.....|+|+|||-|-++..|+. . ...+|.++|.. ..++.+.+|
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 5688999999999999999988 4 22356777774 345544444
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.41 Score=44.00 Aligned_cols=99 Identities=16% Similarity=0.084 Sum_probs=59.2
Q ss_pred CCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceec-----cccccCCCC-C-CccCeeeec
Q 027609 70 FVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYH-----DWCESFNTY-P-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~-----d~~e~f~~y-p-~sFDlVh~~ 139 (221)
...+||..|||. |.+++.+++. ++. .+..++.+ +.++.+.+++-...+. ++.+.+..+ + +.+|+|.-.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~--~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAE--RVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 357899999987 7777777665 543 24444443 4777777773112221 121212122 2 478887543
Q ss_pred -----------cccccc---cccHHHHHHHhhhhccCCeEEEEEc
Q 027609 140 -----------HLFSTI---KKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 140 -----------~v~~h~---~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++..|. ..++...+.++.|.|+|+|.+++-.
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 111222 1156778999999999999998864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.52 Score=44.13 Aligned_cols=59 Identities=17% Similarity=0.367 Sum_probs=46.6
Q ss_pred ccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEE--------cChh---------hHHHHHHHHHhcCCeEEE
Q 027609 132 TYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILR--------DDAE---------TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 132 sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~--------d~~~---------~~~~i~~i~~~l~W~~~~ 191 (221)
+||+|... -|....+|.-+.|.-+.-||+|||++|=- |.+. ..+.+..+++.+.|++..
T Consensus 259 ~~d~VvTc-fFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 259 SYDVVVTC-FFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred ccceEEEE-EEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 59998876 45555559999999999999999998843 3222 268899999999999853
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.71 E-value=1.2 Score=39.07 Aligned_cols=131 Identities=17% Similarity=0.225 Sum_probs=63.0
Q ss_pred CCCeEEeecCcchHHHHHHhhC----C-CeEEEeccCCCCCCHHHHHHcCc--cceeccccccCCCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL----K-VWVMNVVPIESPDTLPIIYERGL--FGLYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~----~-v~vmnv~~~d~~~~l~~a~eRGl--~~~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
+..+|||+||.+|++..--.++ | |..+++.++..++-.-++.-.-+ +.++...-|. .| +..|+|.+...
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~---lp~r~VdvVlSDMa 145 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEA---LPNRPVDVVLSDMA 145 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHh---CCCCcccEEEeccC
Confidence 3778999999999988776665 1 11112222221111000000000 1111111122 24 66777765532
Q ss_pred --------cccccc-cHH-HHHHHhhhhccCCeEEEEE-----cChhhHHHHHHHHHhcCCeEEEee---cCCCeeEEEE
Q 027609 142 --------FSTIKK-SLK-AVVAEVDRILRPDGNLILR-----DDAETIVEVEDLVKSLHWDVRMIY---TNDNQGMLCV 203 (221)
Q Consensus 142 --------~~h~~~-d~~-~vL~EmdRVLRPGG~~ii~-----d~~~~~~~i~~i~~~l~W~~~~~~---~~~~e~~l~~ 203 (221)
..|+.. +.= .+|.=.--.|+|+|.+++. +......++++.+..++= ..++ .++.|..|+|
T Consensus 146 pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~--vKP~Asr~eS~E~y~v~ 223 (232)
T KOG4589|consen 146 PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKK--VKPDASRDESAETYLVC 223 (232)
T ss_pred CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEe--eCCccccccccceeeee
Confidence 224332 111 1222222346699999987 334445555555443321 1112 4568999999
Q ss_pred Ee
Q 027609 204 HK 205 (221)
Q Consensus 204 ~K 205 (221)
.+
T Consensus 224 ~~ 225 (232)
T KOG4589|consen 224 LN 225 (232)
T ss_pred ee
Confidence 87
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.18 Score=45.28 Aligned_cols=63 Identities=17% Similarity=0.357 Sum_probs=43.8
Q ss_pred CCccCeeeeccccccccc---cHHHHHHHhhhhccCCeEEEEEcCh---------------h-hHHHHHHHHHhcCCeEE
Q 027609 130 PRTYDLLHADHLFSTIKK---SLKAVVAEVDRILRPDGNLILRDDA---------------E-TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 130 p~sFDlVh~~~v~~h~~~---d~~~vL~EmdRVLRPGG~~ii~d~~---------------~-~~~~i~~i~~~l~W~~~ 190 (221)
|..||+|.+..|+.-.-. .-..++.-+-+.|||||.||+...- . .-+.|++-++.-...+.
T Consensus 156 p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~ 235 (256)
T PF01234_consen 156 PPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIE 235 (256)
T ss_dssp -SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEE
T ss_pred ccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEE
Confidence 456999999988863332 5678899999999999999998321 1 13556666666666665
Q ss_pred Ee
Q 027609 191 MI 192 (221)
Q Consensus 191 ~~ 192 (221)
..
T Consensus 236 ~~ 237 (256)
T PF01234_consen 236 DL 237 (256)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.39 E-value=1.5 Score=44.38 Aligned_cols=77 Identities=12% Similarity=0.089 Sum_probs=41.1
Q ss_pred EeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCC-CccCeeeeccccc-ccc--ccHHHHHHH---hhhhc
Q 027609 97 NVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYP-RTYDLLHADHLFS-TIK--KSLKAVVAE---VDRIL 160 (221)
Q Consensus 97 nv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp-~sFDlVh~~~v~~-h~~--~d~~~vL~E---mdRVL 160 (221)
.++++|.+ .+++.|.+. |+.+ + ..|+.+--.+++ ++||+|.|+-=+. .+. .+...+-.+ +-|.+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 46788875 577766655 5532 2 234433112234 6899999982221 111 122333333 34444
Q ss_pred cCCeEEEEEcChh
Q 027609 161 RPDGNLILRDDAE 173 (221)
Q Consensus 161 RPGG~~ii~d~~~ 173 (221)
.||+.+++-..++
T Consensus 338 ~~g~~~~llt~~~ 350 (702)
T PRK11783 338 FGGWNAALFSSSP 350 (702)
T ss_pred CCCCeEEEEeCCH
Confidence 4998887766654
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=87.98 E-value=1.7 Score=38.04 Aligned_cols=90 Identities=11% Similarity=0.152 Sum_probs=54.1
Q ss_pred CCCeEEeecCc-chHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceecccc----ccCCCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAV-YGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHDWC----ESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG-~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~----e~f~~yp-~sFDlVh~~~v 141 (221)
...+||..||| .|.++..+++. |+.+ +.++.+ +..+.+.+.|....+.... +.+...+ +.+|++....
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V---~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~- 240 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAV---IAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV- 240 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEE---EEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC-
Confidence 35688888876 47777777664 6554 333433 4667777777533332211 0010123 6788876421
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.....+.++.|.|+|+|.++.-
T Consensus 241 ------g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 241 ------GTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred ------CCHHHHHHHHHHhhcCCEEEEE
Confidence 1246788999999999999875
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.79 E-value=2 Score=39.64 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=72.9
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-----CCHHHHHHcCccc---eec-cccccCCCCC---CccC
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-----DTLPIIYERGLFG---LYH-DWCESFNTYP---RTYD 134 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-----~~l~~a~eRGl~~---~~~-d~~e~f~~yp---~sFD 134 (221)
+-.....|+.-|.|+|++.-+++..=.....+...|.+ ..++-=++.|+.. ++| |.|. +.|+ ..+|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~--~GF~~ks~~aD 179 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG--SGFLIKSLKAD 179 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc--CCccccccccc
Confidence 33447889999999999988887641122234444433 2555556677654 233 6775 2343 5666
Q ss_pred eeeeccccccccccHHHHHHHhhhhccCCe-EE-EEEcChhhHHHHHHHHHhcCCeE
Q 027609 135 LLHADHLFSTIKKSLKAVVAEVDRILRPDG-NL-ILRDDAETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 135 lVh~~~v~~h~~~d~~~vL~EmdRVLRPGG-~~-ii~d~~~~~~~i~~i~~~l~W~~ 189 (221)
.| |-.++ +|-.++==..-+||-+| +| .|+-+-+.+++--..+.+..|.-
T Consensus 180 aV-----FLDlP-aPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~ 230 (314)
T KOG2915|consen 180 AV-----FLDLP-APWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIE 230 (314)
T ss_pred eE-----EEcCC-ChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCce
Confidence 55 44467 67777777777999777 33 44555556666666788888864
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.75 E-value=1.3 Score=42.49 Aligned_cols=122 Identities=15% Similarity=0.168 Sum_probs=68.9
Q ss_pred hhhhccc-CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-----CCHHHHHHcCccceec--cccccCCC-C
Q 027609 59 SYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-----DTLPIIYERGLFGLYH--DWCESFNT-Y 129 (221)
Q Consensus 59 ~Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-----~~l~~a~eRGl~~~~~--d~~e~f~~-y 129 (221)
+|...+. ++.....+|||+=||.|+|+-.|+++... |.+++.. .+.+-|...|+.++.. .-.|.|.+ .
T Consensus 281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~---V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKK---VHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCE---EEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc
Confidence 3444444 45556789999999999999999976433 4455442 2334455556654322 11333332 1
Q ss_pred -C-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCC
Q 027609 130 -P-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW 187 (221)
Q Consensus 130 -p-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W 187 (221)
. ..||.|..+==-.- -...++.++.+ +.|-..+++|=....+.+=-+++.+-+.
T Consensus 358 ~~~~~~d~VvvDPPR~G---~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~~L~~~gy 413 (432)
T COG2265 358 WEGYKPDVVVVDPPRAG---ADREVLKQLAK-LKPKRIVYVSCNPATLARDLAILASTGY 413 (432)
T ss_pred cccCCCCEEEECCCCCC---CCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHHhCCe
Confidence 1 47788876511111 12356666555 5688899999666554443334444444
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=87.67 E-value=0.14 Score=46.15 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=67.9
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-C---CHH-HHHHcCccc--ee-ccccccCCCCC-CccCee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-D---TLP-IIYERGLFG--LY-HDWCESFNTYP-RTYDLL 136 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~---~l~-~a~eRGl~~--~~-~d~~e~f~~yp-~sFDlV 136 (221)
+......+||||-|++||-+.+|++.----..++..|.+ + .+. .+..-|+.. +. +|-....+.++ ..||.|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 456667889999999999777766541100135666664 2 222 333334433 22 34322111233 469998
Q ss_pred ee----ccc--ccccc---------------ccHHHHHHHhhhhc----cCCeEEEEEcChh----hHHHHHHHHHhc
Q 027609 137 HA----DHL--FSTIK---------------KSLKAVVAEVDRIL----RPDGNLILRDDAE----TIVEVEDLVKSL 185 (221)
Q Consensus 137 h~----~~v--~~h~~---------------~d~~~vL~EmdRVL----RPGG~~ii~d~~~----~~~~i~~i~~~l 185 (221)
.+ +.. +..-+ .--..+|....+.| ||||+++.+++.- .-+.|+.++++-
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 74 332 21101 02346788888999 9999999998753 344566666553
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=85.49 E-value=0.6 Score=39.28 Aligned_cols=109 Identities=16% Similarity=0.296 Sum_probs=51.0
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc---cc-eeccccccCCCCC-C-ccCeeeec-
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL---FG-LYHDWCESFNTYP-R-TYDLLHAD- 139 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl---~~-~~~d~~e~f~~yp-~-sFDlVh~~- 139 (221)
+.|+|+-||.||-+-+++...-. |.++|.. ..++.++.. |+ +- +..||-+-...+. + .||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 46999999999999999998533 4666653 355554443 22 11 2345544333333 2 27888754
Q ss_pred ----------cccc---cccc-cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhc
Q 027609 140 ----------HLFS---TIKK-SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSL 185 (221)
Q Consensus 140 ----------~v~~---h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l 185 (221)
..|. +... +...++..+.++-+.=.++.=|..+ ++.+.+++..+
T Consensus 78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~nv~l~LPRn~d--l~ql~~~~~~l 135 (163)
T PF09445_consen 78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPNVVLFLPRNSD--LNQLSQLTREL 135 (163)
T ss_dssp -BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-EEEEEETTB---HHHHHHT----
T ss_pred CCCCccccccCccCHHHccCCCCHHHHHHHHHhhCCCEEEEeCCCCC--HHHHHHHhccc
Confidence 2332 1222 5666777666665432222222222 55665554433
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=84.57 E-value=0.92 Score=41.03 Aligned_cols=133 Identities=17% Similarity=0.259 Sum_probs=77.3
Q ss_pred CCCeEEeecCcchHHHHHHhhC---CCe---E--EEeccCCCCCCHHHHHHcCccceeccccc------cCCCCC-CccC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL---KVW---V--MNVVPIESPDTLPIIYERGLFGLYHDWCE------SFNTYP-RTYD 134 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~---~v~---v--mnv~~~d~~~~l~~a~eRGl~~~~~d~~e------~f~~yp-~sFD 134 (221)
.+++|.|+=+.+|++...|.++ +.. . -.++.+|...|.++ .|++.+..|... .+.-|- .-.|
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI---~GV~qlq~DIT~~stae~Ii~hfggekAd 117 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI---EGVIQLQGDITSASTAEAIIEHFGGEKAD 117 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc---CceEEeecccCCHhHHHHHHHHhCCCCcc
Confidence 3899999999999988877654 110 0 02566776555442 344333333211 011266 5889
Q ss_pred eeeeccccc--ccc---c-----cHHHHHHHhhhhccCCeEEEEE-----cChhhHHHHHHHHHhcCCeE-EEeecCCCe
Q 027609 135 LLHADHLFS--TIK---K-----SLKAVVAEVDRILRPDGNLILR-----DDAETIVEVEDLVKSLHWDV-RMIYTNDNQ 198 (221)
Q Consensus 135 lVh~~~v~~--h~~---~-----d~~~vL~EmdRVLRPGG~~ii~-----d~~~~~~~i~~i~~~l~W~~-~~~~~~~~e 198 (221)
+|.|...=. -++ + -...+|.=.-+||||||.|+-. ++.-....++.++++++=-. +..-..+-|
T Consensus 118 lVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~kv~~~KPrsSR~sSiE 197 (294)
T KOG1099|consen 118 LVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKKVTCAKPRSSRNSSIE 197 (294)
T ss_pred EEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhceeeecCCccccccce
Confidence 999886431 122 1 2344556678999999999754 33334567777777664321 111122358
Q ss_pred eEEEEEe
Q 027609 199 GMLCVHK 205 (221)
Q Consensus 199 ~~l~~~K 205 (221)
-+++|+-
T Consensus 198 aFvvC~~ 204 (294)
T KOG1099|consen 198 AFVVCLG 204 (294)
T ss_pred eeeeecc
Confidence 8888874
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.27 E-value=1.1 Score=40.38 Aligned_cols=89 Identities=21% Similarity=0.198 Sum_probs=53.7
Q ss_pred cCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC----CHHHHHHcC-------c-----cceecccccc-CC
Q 027609 65 GINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD----TLPIIYERG-------L-----FGLYHDWCES-FN 127 (221)
Q Consensus 65 ~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~----~l~~a~eRG-------l-----~~~~~d~~e~-f~ 127 (221)
+++.+..-+|||.=||+|..|-.++.+|..| +.++.+. .++-..+|. . +.+++.-+.. +.
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~~V---~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~ 159 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRV---RMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT 159 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCCEE---EEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHh
Confidence 3556544589999999999999999998763 5554432 222222221 0 1122221111 22
Q ss_pred CCCCccCeeeeccccccccccHHHHHHHhh
Q 027609 128 TYPRTYDLLHADHLFSTIKKSLKAVVAEVD 157 (221)
Q Consensus 128 ~yp~sFDlVh~~~v~~h~~~d~~~vL~Emd 157 (221)
..+.+||+|...=-|.|-. .-..+..||.
T Consensus 160 ~~~~~fDVVYlDPMfp~~~-ksa~vkk~mr 188 (250)
T PRK10742 160 DITPRPQVVYLDPMFPHKQ-KSALVKKEMR 188 (250)
T ss_pred hCCCCCcEEEECCCCCCCc-cccchhhhHH
Confidence 2456899999998887644 2345677774
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=83.90 E-value=6.6 Score=33.95 Aligned_cols=132 Identities=11% Similarity=0.086 Sum_probs=77.9
Q ss_pred EEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCH----HHHHHcCccceec-cccccCCCCC-C-ccCeeeeccccccc
Q 027609 74 VMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTL----PIIYERGLFGLYH-DWCESFNTYP-R-TYDLLHADHLFSTI 145 (221)
Q Consensus 74 VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l----~~a~eRGl~~~~~-d~~e~f~~yp-~-sFDlVh~~~v~~h~ 145 (221)
|.|+||--|-+..+|++++.- -.+...|.. ..+ +.+...|+...+. -.+..|...+ + ..|.|.-+.+=..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~-~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKA-PKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHH
Confidence 679999999999999999842 245666653 233 3444556644221 1233465565 3 37887766554433
Q ss_pred cccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEee---c-CCCeeEEEEEecccCC
Q 027609 146 KKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY---T-NDNQGMLCVHKTYWRP 210 (221)
Q Consensus 146 ~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~---~-~~~e~~l~~~K~~w~~ 210 (221)
...+|.+....++.--.||+.-. .....+.+.+....|...-.+ . ..=-.|+.+.++--..
T Consensus 80 ---I~~ILe~~~~~~~~~~~lILqP~-~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~~~~ 144 (205)
T PF04816_consen 80 ---IIEILEAGPEKLSSAKRLILQPN-THAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGEEKP 144 (205)
T ss_dssp ---HHHHHHHTGGGGTT--EEEEEES-S-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESSS--
T ss_pred ---HHHHHHhhHHHhccCCeEEEeCC-CChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCCCCC
Confidence 46888888888888778888754 356789999999999986321 2 2235567776655443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.75 E-value=1.5 Score=39.66 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=48.8
Q ss_pred chhhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc----ccee
Q 027609 45 FTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL----FGLY 119 (221)
Q Consensus 45 f~~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl----~~~~ 119 (221)
|--|...=.+.|.. .++.. ..+||.+|+|.|+++..|++++..+ +.++.. .+++.-.++-- ..++
T Consensus 12 FL~d~~v~~kIv~~-----a~~~~--~d~VlEIGpG~GaLT~~Ll~~~~~v---~aiEiD~~l~~~L~~~~~~~~n~~vi 81 (259)
T COG0030 12 FLIDKNVIDKIVEA-----ANISP--GDNVLEIGPGLGALTEPLLERAARV---TAIEIDRRLAEVLKERFAPYDNLTVI 81 (259)
T ss_pred cccCHHHHHHHHHh-----cCCCC--CCeEEEECCCCCHHHHHHHhhcCeE---EEEEeCHHHHHHHHHhcccccceEEE
Confidence 55565554444422 22333 7899999999999999999997553 444443 36665555521 2233
Q ss_pred c-cccccCCCCCC--ccCeeeec
Q 027609 120 H-DWCESFNTYPR--TYDLLHAD 139 (221)
Q Consensus 120 ~-d~~e~f~~yp~--sFDlVh~~ 139 (221)
+ |... + .||. .++.|.++
T Consensus 82 ~~DaLk-~-d~~~l~~~~~vVaN 102 (259)
T COG0030 82 NGDALK-F-DFPSLAQPYKVVAN 102 (259)
T ss_pred eCchhc-C-cchhhcCCCEEEEc
Confidence 3 4211 1 1343 67777776
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=83.71 E-value=1.2 Score=41.36 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=30.3
Q ss_pred hhhhccc-CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHH
Q 027609 59 SYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIY 111 (221)
Q Consensus 59 ~Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~ 111 (221)
.|...+. ++.... +|||+=||.|+|+-.|+++.-. |.+++.. ++++.|.
T Consensus 185 l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~---V~gvE~~~~av~~A~ 235 (352)
T PF05958_consen 185 LYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKK---VIGVEIVEEAVEDAR 235 (352)
T ss_dssp HHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSE---EEEEES-HHHHHHHH
T ss_pred HHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCe---EEEeeCCHHHHHHHH
Confidence 4554444 333333 7999999999999999998544 4555553 3555443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.88 E-value=1 Score=38.22 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=43.7
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-----cceeccccccCCC-CC-CccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-----FGLYHDWCESFNT-YP-RTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-----~~~~~d~~e~f~~-yp-~sFDlVh 137 (221)
........++|+|||.|-+.-+..-.+.- .+.++|.. +.|++...... +..+. |.-+.. +. ..||.+.
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e--~vlGfDIdpeALEIf~rNaeEfEvqidlLq--cdildle~~~g~fDtav 119 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNE--SVLGFDIDPEALEIFTRNAEEFEVQIDLLQ--CDILDLELKGGIFDTAV 119 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCCc--eEEeeecCHHHHHHHhhchHHhhhhhheee--eeccchhccCCeEeeEE
Confidence 44556888999999999876444333322 36788874 57776544422 11222 222222 23 7888887
Q ss_pred eccccc
Q 027609 138 ADHLFS 143 (221)
Q Consensus 138 ~~~v~~ 143 (221)
-+.=|.
T Consensus 120 iNppFG 125 (185)
T KOG3420|consen 120 INPPFG 125 (185)
T ss_pred ecCCCC
Confidence 776664
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.28 E-value=2.8 Score=41.05 Aligned_cols=101 Identities=16% Similarity=0.098 Sum_probs=58.3
Q ss_pred CCCeEEeecCcch--HHHHHHhhCCCeEEEeccCCCCC-CHHHHHHc--C--ccc--eeccc--cccCCCCC--CccCee
Q 027609 70 FVRNVMDMRAVYG--GFAAALKDLKVWVMNVVPIESPD-TLPIIYER--G--LFG--LYHDW--CESFNTYP--RTYDLL 136 (221)
Q Consensus 70 ~~r~VLD~GcG~G--~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eR--G--l~~--~~~d~--~e~f~~yp--~sFDlV 136 (221)
..+.++|+|.|.| +.++.++-+. ..--++.+|.+. |+..+... + =+| +++.. -+-+.|-+ +.||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 4556888877765 4556665554 111245555542 44433221 1 011 11110 01344544 669999
Q ss_pred eeccccccccc--cHHHHHHHhh-hhccCCeEEEEEcC
Q 027609 137 HADHLFSTIKK--SLKAVVAEVD-RILRPDGNLILRDD 171 (221)
Q Consensus 137 h~~~v~~h~~~--d~~~vL~Emd-RVLRPGG~~ii~d~ 171 (221)
.|++.+++..+ ...++..+.. +..||||++|+-+.
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 99999998875 4555555554 46899999999854
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.15 E-value=2.3 Score=39.20 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCC-CCCHHHHHHcC--cc--c---eeccccccCCCCC-CccCeeeec
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIES-PDTLPIIYERG--LF--G---LYHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~-~~~l~~a~eRG--l~--~---~~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
...||.+|-|+|.++..|++.+..| ++++. +.|+....+|+ .+ + ++| |..|. -+ --||++.++
T Consensus 59 tD~VLEvGPGTGnLT~~lLe~~kkV---vA~E~Dprmvael~krv~gtp~~~kLqV~~--gD~lK-~d~P~fd~cVsN 130 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLLEAGKKV---VAVEIDPRMVAELEKRVQGTPKSGKLQVLH--GDFLK-TDLPRFDGCVSN 130 (315)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCeE---EEEecCcHHHHHHHHHhcCCCccceeeEEe--ccccc-CCCcccceeecc
Confidence 6789999999999999999998765 55554 35777777774 33 2 333 23333 33 567877764
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.53 E-value=0.52 Score=41.97 Aligned_cols=77 Identities=26% Similarity=0.391 Sum_probs=35.7
Q ss_pred cCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCc----------------cceec-cccccCC
Q 027609 65 GINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGL----------------FGLYH-DWCESFN 127 (221)
Q Consensus 65 ~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl----------------~~~~~-d~~e~f~ 127 (221)
+++.+...+|||.-||.|.=|.-|+..|. +|+.++.+..+....+.|| +.++| |-.+ +.
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~G~---~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~-~L 145 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASLGC---KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE-YL 145 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC-HC
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHccCC---eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH-HH
Confidence 36676667999999999986666655565 3566655544444444443 12333 2222 22
Q ss_pred CCC-CccCeeeeccccccc
Q 027609 128 TYP-RTYDLLHADHLFSTI 145 (221)
Q Consensus 128 ~yp-~sFDlVh~~~v~~h~ 145 (221)
.-+ ++||+|...=.|.|-
T Consensus 146 ~~~~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 146 RQPDNSFDVVYFDPMFPER 164 (234)
T ss_dssp CCHSS--SEEEE--S----
T ss_pred hhcCCCCCEEEECCCCCCc
Confidence 244 999999999888763
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 221 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 3e-04
Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 34/155 (21%)
Query: 84 FAAAL----KDLKVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHA 138
L +DL P E T P + D +++ + + +
Sbjct: 307 LLKYLDCRPQDL--------PREVLTTNPRRL--SIIAESIRDGLATWDNW-KHVNC--- 352
Query: 139 DHLFSTIKKSLKAVVAEVDR-------ILRPDGNL------ILRDDAETIVEVEDLVKSL 185
D L + I+ SL + R + P ++ ++ D +V +V L
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS-DVMVVVNKL 411
Query: 186 HWDVRMIYTNDNQGMLCVHKTYWRPKETETILSAM 220
H ++ + + + Y K A+
Sbjct: 412 H-KYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 4e-04
Identities = 39/247 (15%), Positives = 85/247 (34%), Gaps = 75/247 (30%)
Query: 23 LEKPPY-WLNSEAGVYGKAAPEDFTADYQHWKN-------VVSKSYLNGMGINWSFVRNV 74
+ + Y +L S + P T Y ++ V +K ++ + + +
Sbjct: 86 VLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 75 MDMR-----AVYG--GF------AAALKDLKV---------WVMNVVPIESPDTLPIIYE 112
+++R + G G KV W +N+ SP+T+ + +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQ 203
Query: 113 RGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILR----PDGNLIL 168
+ L+ + +W +DH S IK + ++ AE+ R+L+ + L+L
Sbjct: 204 KLLYQIDPNWTSR------------SDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 169 RD--DAETI---------------VEVEDLVKSLHWDVRMIYTNDNQGMLCVHKTYWRPK 211
+ +A+ +V D + + I + + L P
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT--TTHISLDHHSMTL-------TPD 301
Query: 212 ETETILS 218
E +++L
Sbjct: 302 EVKSLLL 308
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 221 | |||
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.7 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.64 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.64 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.63 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.63 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.62 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.61 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.61 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.61 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.61 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.6 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.6 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.6 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.6 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.59 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.59 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.59 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.59 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.59 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.59 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.58 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.58 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.58 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.57 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.57 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.57 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.57 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.57 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.56 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.55 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.55 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.55 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.54 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.54 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.54 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.54 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.54 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.54 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.53 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.53 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.53 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.53 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.53 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.53 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.53 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.53 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.52 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.52 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.52 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.52 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.51 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.51 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.51 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.51 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.51 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.51 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.51 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.5 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.5 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.5 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.5 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.49 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.48 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.48 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.47 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.47 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.47 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.45 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.45 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.45 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.45 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.45 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.44 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.44 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.44 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.44 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.44 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.44 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.43 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.43 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.43 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.43 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.42 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.42 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.42 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.42 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.42 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.41 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.41 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.41 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.4 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.39 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.39 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.39 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.39 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.39 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.38 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.38 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.38 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.37 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.37 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.36 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.36 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.36 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.36 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.36 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.35 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.35 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.35 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.34 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.34 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.34 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.33 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.32 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.31 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.3 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.3 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.3 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.28 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.28 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.28 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.27 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.27 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.27 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.27 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.27 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.26 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.26 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.25 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.25 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.25 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.25 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.25 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.25 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.25 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.24 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.23 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.23 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.23 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.22 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.22 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.21 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.21 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.21 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.2 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.2 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.2 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.19 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.19 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.19 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.19 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.19 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.19 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.18 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.18 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.18 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.18 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.18 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.18 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.18 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.17 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.17 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.17 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.17 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.16 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.15 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.15 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.15 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.14 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.14 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.13 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.11 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.11 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.1 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.1 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.09 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.08 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.08 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.08 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.07 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.07 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.07 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.06 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.06 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.06 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.05 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.05 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.05 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.04 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.04 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.03 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.02 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.01 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.0 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.0 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.0 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.0 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.99 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.99 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.98 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.98 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.97 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.96 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.96 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.96 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.94 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.93 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.92 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.91 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.91 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.91 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.91 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.91 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.9 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.89 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.89 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.88 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.88 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.88 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.87 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.87 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.86 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.86 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.86 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.84 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.83 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.81 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.79 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.78 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.76 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.75 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.75 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.74 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.73 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.71 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.71 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.7 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.68 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.68 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.68 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.65 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.6 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.57 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.56 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.53 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.51 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.44 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.43 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.43 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.42 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.38 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.31 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.3 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.27 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.24 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.16 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.02 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.0 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.98 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.98 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.92 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.89 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.82 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.73 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.73 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.71 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.71 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.59 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 97.53 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.5 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.43 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.43 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.4 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.28 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.24 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.23 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.22 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.07 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.01 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.01 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 96.89 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 96.87 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 96.85 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.78 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.77 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.61 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 96.61 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 96.53 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 96.52 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 96.41 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.19 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 95.88 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 95.47 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.45 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.34 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 95.26 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.58 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.53 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 93.23 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 92.77 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 90.34 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 89.43 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 89.25 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 89.2 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 88.23 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 87.53 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 87.22 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 86.38 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 85.27 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 84.93 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 84.47 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 82.88 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 81.55 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 81.26 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 81.18 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 80.51 |
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=131.68 Aligned_cols=141 Identities=18% Similarity=0.236 Sum_probs=103.5
Q ss_pred hhhccc-CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc--cce-eccccccCCCCCCccC
Q 027609 60 YLNGMG-INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL--FGL-YHDWCESFNTYPRTYD 134 (221)
Q Consensus 60 Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl--~~~-~~d~~e~f~~yp~sFD 134 (221)
|..++. +......+|||+|||+|.++..|++++. +++++|.+ .+++.+.++.- +.. ..|.. .+ +++++||
T Consensus 34 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~-~~-~~~~~fD 108 (220)
T 3hnr_A 34 YEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFL-SF-EVPTSID 108 (220)
T ss_dssp HHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSS-SC-CCCSCCS
T ss_pred HHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChh-hc-CCCCCeE
Confidence 344443 3333578999999999999999999864 57899986 58998888732 222 23432 23 2448999
Q ss_pred eeeeccccccccccHHH--HHHHhhhhccCCeEEEEEcCh----h---------------------------hHHHHHHH
Q 027609 135 LLHADHLFSTIKKSLKA--VVAEVDRILRPDGNLILRDDA----E---------------------------TIVEVEDL 181 (221)
Q Consensus 135 lVh~~~v~~h~~~d~~~--vL~EmdRVLRPGG~~ii~d~~----~---------------------------~~~~i~~i 181 (221)
+|.|..+++|+. ++.. +|.|+.|+|||||.+++.+.. . ..+.++++
T Consensus 109 ~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (220)
T 3hnr_A 109 TIVSTYAFHHLT-DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTI 187 (220)
T ss_dssp EEEEESCGGGSC-HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHH
T ss_pred EEEECcchhcCC-hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHH
Confidence 999999999998 6766 999999999999999999632 0 13677888
Q ss_pred HHhcCCeEEEeecCCCeeEEEEEec
Q 027609 182 VKSLHWDVRMIYTNDNQGMLCVHKT 206 (221)
Q Consensus 182 ~~~l~W~~~~~~~~~~e~~l~~~K~ 206 (221)
++.-.+++......+-.=++.++|+
T Consensus 188 l~~aGf~v~~~~~~~~~w~~~~~~~ 212 (220)
T 3hnr_A 188 FENNGFHVTFTRLNHFVWVMEATKQ 212 (220)
T ss_dssp HHHTTEEEEEEECSSSEEEEEEEEC
T ss_pred HHHCCCEEEEeeccceEEEEeehhh
Confidence 8888998766555555556666664
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-16 Score=127.91 Aligned_cols=96 Identities=19% Similarity=0.312 Sum_probs=77.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc--ccee-ccccccCCCCCCccCeeeeccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL--FGLY-HDWCESFNTYPRTYDLLHADHLFSTI 145 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl--~~~~-~d~~e~f~~yp~sFDlVh~~~v~~h~ 145 (221)
...+|||+|||+|.++..|++++. +++++|.+ .+++.+.++.- +..+ .|. +.+ +.+++||+|+|..+++|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~-~~~-~~~~~fD~v~~~~~l~~~ 116 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRF-EDA-QLPRRYDNIVLTHVLEHI 116 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCG-GGC-CCSSCEEEEEEESCGGGC
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccH-HHc-CcCCcccEEEEhhHHHhh
Confidence 356799999999999999998864 46888886 59999988732 1222 343 223 224999999999999999
Q ss_pred cccHHHHHHHhh-hhccCCeEEEEEcC
Q 027609 146 KKSLKAVVAEVD-RILRPDGNLILRDD 171 (221)
Q Consensus 146 ~~d~~~vL~Emd-RVLRPGG~~ii~d~ 171 (221)
. |+..+|.|+. |+|||||++++.+.
T Consensus 117 ~-~~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 117 D-DPVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp S-SHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred c-CHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 8 8999999999 99999999999874
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=124.23 Aligned_cols=129 Identities=15% Similarity=0.184 Sum_probs=96.6
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc---c-eeccccccCCCCC-CccCeeeecccc
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF---G-LYHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~---~-~~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
+|||+|||+|.++..|++++ ..+++++|.+ .+++.+.++ |+. . ...|. +.+ +++ ++||+|.|..++
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~-~~~~~~~D~v~~~~~l 121 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQS--DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV-HNI-PIEDNYADLIVSRGSV 121 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHS--EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBT-TBC-SSCTTCEEEEEEESCG
T ss_pred EEEEECCCCCHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCH-HHC-CCCcccccEEEECchH
Confidence 99999999999999999872 2367899986 588877776 432 2 22343 223 366 999999999999
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcCh------------------------------hhHHHHHHHHHhcCCeEEEe
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDDA------------------------------ETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~------------------------------~~~~~i~~i~~~l~W~~~~~ 192 (221)
+|+. ++..+|.|+.|+|||||.+++.+.. ...+.+.++++.-.++....
T Consensus 122 ~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 200 (219)
T 3dlc_A 122 FFWE-DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEI 200 (219)
T ss_dssp GGCS-CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEE
T ss_pred hhcc-CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEE
Confidence 9997 8999999999999999999998521 11367788888888876544
Q ss_pred ecCCCeeEEEEEec
Q 027609 193 YTNDNQGMLCVHKT 206 (221)
Q Consensus 193 ~~~~~e~~l~~~K~ 206 (221)
...+....+++.|+
T Consensus 201 ~~~~~~~~~~~~k~ 214 (219)
T 3dlc_A 201 ILGDEGFWIIISKT 214 (219)
T ss_dssp EEETTEEEEEEBCC
T ss_pred EecCCceEEEEecc
Confidence 44444556666653
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-16 Score=139.00 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=74.2
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeecccccccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKS 148 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d 148 (221)
..+|||+|||+|.++..|++++. +|+++|.+ .|++.+.++.-+...+.-+|.+ ++| ++||+|.|.+++| |. +
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~-~~~~~sfD~v~~~~~~h-~~-~ 113 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAEDT-GLPPASVDVAIAAQAMH-WF-D 113 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTTCC-CCCSSCEEEEEECSCCT-TC-C
T ss_pred CCCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhhhh-cccCCcccEEEEeeehh-Hh-h
Confidence 46899999999999999999874 46888887 5888776553333333224444 477 9999999999995 55 6
Q ss_pred HHHHHHHhhhhccCCeEEEEEc
Q 027609 149 LKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+..++.|+.|||||||.|++.+
T Consensus 114 ~~~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 114 LDRFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEE
Confidence 8899999999999999998864
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.6e-16 Score=126.77 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=101.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---eeccccccCCCCC-CccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LYHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
....+|||+|||+|.++..|+++.....+++++|.+ .+++.+.++ |+.. ...|. +.+ +++ ++||+|.|.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~ 113 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE-NKI-PLPDNTVDFIFMA 113 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBT-TBC-SSCSSCEEEEEEE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccc-ccC-CCCCCCeeEEEee
Confidence 346799999999999999998874111257888886 588877666 3322 22343 223 366 899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcCh-------------hhHHHHHHHHHhcCCeEEEe-ecCCCeeEEEEEe
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-------------ETIVEVEDLVKSLHWDVRMI-YTNDNQGMLCVHK 205 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-------------~~~~~i~~i~~~l~W~~~~~-~~~~~e~~l~~~K 205 (221)
.+++|+. ++..+|.|+.|+|||||++++.+.. ...+.+.++++...++.... +......+++++|
T Consensus 114 ~~l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 114 FTFHELS-EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp SCGGGCS-SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred hhhhhcC-CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 9999998 8999999999999999999998632 12688999999999996543 3445677888888
Q ss_pred c
Q 027609 206 T 206 (221)
Q Consensus 206 ~ 206 (221)
+
T Consensus 193 ~ 193 (219)
T 3dh0_A 193 V 193 (219)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=122.99 Aligned_cols=132 Identities=13% Similarity=0.196 Sum_probs=99.6
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceec-cccccC---CCCC-CccCeeeecccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYH-DWCESF---NTYP-RTYDLLHADHLF 142 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~-d~~e~f---~~yp-~sFDlVh~~~v~ 142 (221)
....+|||+|||+|.++..|++++. +++++|.+ .+++.+.+++...... |. +.+ +..+ .+||+|.|..++
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~fD~v~~~~~l 126 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASY-AQLAEAKVPVGKDYDLICANFAL 126 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCH-HHHHTTCSCCCCCEEEEEEESCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhH-HhhcccccccCCCccEEEECchh
Confidence 3458999999999999999999865 56888986 5999999986544332 22 122 2234 669999999999
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcChh--------------------------------hHHHHHHHHHhcCCeEE
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDDAE--------------------------------TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~--------------------------------~~~~i~~i~~~l~W~~~ 190 (221)
+ .. ++..+|.|+.|+|||||++++.+.++ ..+.+.+++..-.+++.
T Consensus 127 ~-~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 204 (227)
T 3e8s_A 127 L-HQ-DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV 204 (227)
T ss_dssp C-SS-CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEE
T ss_pred h-hh-hHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEE
Confidence 8 45 89999999999999999999986421 36888999999999886
Q ss_pred Eeec---C----CCeeEEEEEec
Q 027609 191 MIYT---N----DNQGMLCVHKT 206 (221)
Q Consensus 191 ~~~~---~----~~e~~l~~~K~ 206 (221)
.... . ...-+++++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 205 SLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EEECCCCTTCSSCSCEEEEEEEC
T ss_pred EEecCCCCCCCCceeEEEEeecC
Confidence 4321 1 12557777773
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-16 Score=131.04 Aligned_cols=97 Identities=21% Similarity=0.269 Sum_probs=78.7
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---eeccccccCCCCC-CccCeeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LYHDWCESFNTYP-RTYDLLHA 138 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~d~~e~f~~yp-~sFDlVh~ 138 (221)
.....+|||+|||+|.++..|++++. +++++|.+ .|++.+.++ |+.+ ...|. +.+ +|+ ++||+|+|
T Consensus 35 ~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~l-~~~~~~fD~V~~ 109 (260)
T 1vl5_A 35 LKGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQM-PFTDERFHIVTC 109 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CC-CSCTTCEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH-HhC-CCCCCCEEEEEE
Confidence 33578999999999999999998864 67899986 588887765 4332 23343 333 476 99999999
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
..+++|+. |+..+|.|+.|+|||||++++.+
T Consensus 110 ~~~l~~~~-d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 110 RIAAHHFP-NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp ESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhHhcC-CHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999999 89999999999999999999974
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=122.26 Aligned_cols=95 Identities=18% Similarity=0.302 Sum_probs=77.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccce---eccccccCCCCC-CccCeeeecccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGL---YHDWCESFNTYP-RTYDLLHADHLFST 144 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~---~~d~~e~f~~yp-~sFDlVh~~~v~~h 144 (221)
...+|||+|||+|.++..|++++. +++++|.+ .+++.+.++|+..+ ..|..+ + ++ ++||+|.|+.+++|
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~-~--~~~~~~D~v~~~~~l~~ 119 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFD-W--TPDRQWDAVFFAHWLAH 119 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTS-C--CCSSCEEEEEEESCGGG
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEeccccc-C--CCCCceeEEEEechhhc
Confidence 356999999999999999998864 56888886 59999988775432 234322 2 55 99999999999999
Q ss_pred ccccH--HHHHHHhhhhccCCeEEEEEcC
Q 027609 145 IKKSL--KAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 145 ~~~d~--~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+. ++ ..+|.|+.|+|||||.+++.+.
T Consensus 120 ~~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 120 VP-DDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp SC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC-HHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 98 54 8999999999999999999964
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-15 Score=119.31 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=101.0
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeecccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIK 146 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~ 146 (221)
....+|||+|||+|.++..|++++ . +++++|.+ .+++.+.++ ...+..- +.. .+++ ++||+|.|..+++|+.
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~~-~~~v~~~-~~d-~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA--T-KLYCIDINVIALKEVKEK-FDSVITL-SDP-KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE--E-EEEEECSCHHHHHHHHHH-CTTSEEE-SSG-GGSCTTCEEEEEEESCSTTCS
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc--C-eEEEEeCCHHHHHHHHHh-CCCcEEE-eCC-CCCCCCceEEEEEccchhccc
Confidence 347899999999999999999986 2 78999986 589988887 3221111 111 3566 8999999999999998
Q ss_pred ccHHHHHHHhhhhccCCeEEEEEcChh-------------hHHHHHHHHHhcCCeEEEee-cCCCeeEEEEEecccCCCc
Q 027609 147 KSLKAVVAEVDRILRPDGNLILRDDAE-------------TIVEVEDLVKSLHWDVRMIY-TNDNQGMLCVHKTYWRPKE 212 (221)
Q Consensus 147 ~d~~~vL~EmdRVLRPGG~~ii~d~~~-------------~~~~i~~i~~~l~W~~~~~~-~~~~e~~l~~~K~~w~~~~ 212 (221)
++..+|.|+.|+|||||++++.+... ..+++++++. .|+..... .....-.+++.|+-=++.+
T Consensus 90 -~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (170)
T 3i9f_A 90 -DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLKRKTSEGHH 166 (170)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEEECCCCSCC
T ss_pred -CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEecCCCCccc
Confidence 89999999999999999999995321 1467777777 88765433 3345677888776444433
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-16 Score=134.42 Aligned_cols=102 Identities=10% Similarity=0.109 Sum_probs=77.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCC-CCHHHHHHc----CccceeccccccCCCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP-DTLPIIYER----GLFGLYHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
...+|||+|||+|.++..|+++- ....+|+++|.+ .|++.|+++ |+...+.=.+..+..+| ..||+|.|..++
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l 149 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 149 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeee
Confidence 36789999999999999998762 122357999987 599998876 33221111122344566 789999999999
Q ss_pred ccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 143 STIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 143 ~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+|++. +...+|.|+.|+|||||.|+++|.
T Consensus 150 ~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 150 QFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 98874 556899999999999999999864
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-16 Score=142.07 Aligned_cols=144 Identities=11% Similarity=0.127 Sum_probs=109.4
Q ss_pred cchhhhhhhHHHHHhhhhhccc-CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceec-
Q 027609 44 DFTADYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYH- 120 (221)
Q Consensus 44 ~f~~d~~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~- 120 (221)
.+...+..|..+.......++. +......+|||+|||+|.++..|++++. +++++|.+ ++++.+.++|+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~ 156 (416)
T 4e2x_A 80 YHSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDF 156 (416)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSC
T ss_pred CcCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceee
Confidence 3445666788877663333333 4444578999999999999999999875 57899987 5999999997644321
Q ss_pred ---cccccCCCCC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChh--------------------hHH
Q 027609 121 ---DWCESFNTYP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE--------------------TIV 176 (221)
Q Consensus 121 ---d~~e~f~~yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~--------------------~~~ 176 (221)
+..+.+ +++ ++||+|+|..+|+|++ |+..+|.|+.|+|||||++++.+... ..+
T Consensus 157 ~~~~~~~~l-~~~~~~fD~I~~~~vl~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 234 (416)
T 4e2x_A 157 FEKATADDV-RRTEGPANVIYAANTLCHIP-YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSAT 234 (416)
T ss_dssp CSHHHHHHH-HHHHCCEEEEEEESCGGGCT-THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHH
T ss_pred echhhHhhc-ccCCCCEEEEEECChHHhcC-CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHH
Confidence 112222 355 9999999999999999 89999999999999999999985420 146
Q ss_pred HHHHHHHhcCCeEEEe
Q 027609 177 EVEDLVKSLHWDVRMI 192 (221)
Q Consensus 177 ~i~~i~~~l~W~~~~~ 192 (221)
.++.++.+-.+++...
T Consensus 235 ~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 235 SVQGMAQRCGFELVDV 250 (416)
T ss_dssp HHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 7888999989887543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-15 Score=125.56 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=82.1
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc---cc-eeccccccCCCCC-CccCeeeec
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL---FG-LYHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl---~~-~~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
+......+|||+|||+|.++..|++++.. +++++|.+ .+++.+.++.- +. ...|. +.+ +++ ++||+|.|.
T Consensus 40 ~~~~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~ 115 (253)
T 3g5l_A 40 LPDFNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAI-EDI-AIEPDAYNVVLSS 115 (253)
T ss_dssp CCCCTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCG-GGC-CCCTTCEEEEEEE
T ss_pred hhccCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcch-hhC-CCCCCCeEEEEEc
Confidence 34446789999999999999999998753 57899986 59999988742 11 23343 334 365 999999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.+++|+. ++..+|.|+.|+|||||.+++....
T Consensus 116 ~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 116 LALHYIA-SFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp SCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhhhhh-hHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9999997 8999999999999999999998543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-15 Score=122.59 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=80.5
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeecccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIK 146 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~ 146 (221)
....+|||+|||+|.++..|++++ .+++++|.+ .+++.+.++...-...|..+...+++ ++||+|.|..+++|+.
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~ 107 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF 107 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSS
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcC
Confidence 457899999999999999999986 267888886 58888887743212334332224566 8999999999999998
Q ss_pred ccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 147 KSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 147 ~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
++..+|.++.|+|||||++++.+..
T Consensus 108 -~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 108 -DPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp -CHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred -CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 8999999999999999999998643
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=132.13 Aligned_cols=100 Identities=12% Similarity=0.247 Sum_probs=73.2
Q ss_pred CCCCeEEeecCcchHHHHH----HhhC--CCeEEEeccCCCC-CCHHHHHHc-----Cccceeccc----cccCC-----
Q 027609 69 SFVRNVMDMRAVYGGFAAA----LKDL--KVWVMNVVPIESP-DTLPIIYER-----GLFGLYHDW----CESFN----- 127 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~----L~~~--~v~vmnv~~~d~~-~~l~~a~eR-----Gl~~~~~d~----~e~f~----- 127 (221)
....+|||+|||+|.++.. +..+ ++. +.++++|.+ +|++.+.++ |+..+...+ .+.++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~-v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVC-INNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCE-EEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCce-eeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 3467899999999986643 3332 232 245899987 599988876 332221111 12232
Q ss_pred CCC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 128 TYP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 128 ~yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+|+ ++||+|+|+.+++|+. |+..+|.||.|+|||||++++..
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCCceeEEEEeeeeeecC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 255 9999999999999999 89999999999999999999874
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=119.68 Aligned_cols=134 Identities=13% Similarity=0.165 Sum_probs=97.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c-------cc-eeccccccCCCCC-CccC
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L-------FG-LYHDWCESFNTYP-RTYD 134 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l-------~~-~~~d~~e~f~~yp-~sFD 134 (221)
....+|||+|||+|.++..|++++.. .+++++|.+ .+++.+.++- + +. ...|. + ..+++ ++||
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~-~~~~~~~~fD 104 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL-V-YRDKRFSGYD 104 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS-S-SCCGGGTTCS
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc-c-ccccccCCCC
Confidence 34679999999999999999987521 267899986 5888887761 1 11 22343 2 23344 8999
Q ss_pred eeeeccccccccccH--HHHHHHhhhhccCCeEEEEEcChhh----------------------HHHHH----HHHHhcC
Q 027609 135 LLHADHLFSTIKKSL--KAVVAEVDRILRPDGNLILRDDAET----------------------IVEVE----DLVKSLH 186 (221)
Q Consensus 135 lVh~~~v~~h~~~d~--~~vL~EmdRVLRPGG~~ii~d~~~~----------------------~~~i~----~i~~~l~ 186 (221)
+|.|..+++|+. ++ ..+|.|+.|+|||||+++.....+. .++++ +++..-.
T Consensus 105 ~V~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~G 183 (219)
T 3jwg_A 105 AATVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYG 183 (219)
T ss_dssp EEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHT
T ss_pred EEEEHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCC
Confidence 999999999998 45 7999999999999998877644321 23344 7788888
Q ss_pred CeEEEee-------cCCCeeEEEEEec
Q 027609 187 WDVRMIY-------TNDNQGMLCVHKT 206 (221)
Q Consensus 187 W~~~~~~-------~~~~e~~l~~~K~ 206 (221)
+++.... .....++.||+|+
T Consensus 184 f~v~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 184 YSVRFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp EEEEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred cEEEEEecCCccccCCCCeEEEEEecc
Confidence 8876542 1236889999985
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-15 Score=128.68 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=76.8
Q ss_pred CCCCCeEEeecCcchHHHHHHhh-CCCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCCCccCeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKD-LKVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~-~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp~sFDlVh 137 (221)
.....+|||+|||+|.++..|++ .+. +++++|.+ ++++.+.++ |+.. . ..|. ..+|++||+|+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~----~~~~~~fD~v~ 134 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW----EQFDEPVDRIV 134 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG----GGCCCCCSEEE
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECCh----hhCCCCeeEEE
Confidence 34577999999999999999984 454 57888886 588888776 4322 2 2332 23569999999
Q ss_pred eccccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 138 ADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 138 ~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
|..+|+|+.. ++..+|.|+.|+|||||.+++.+.
T Consensus 135 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 135 SIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp EESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9999999953 899999999999999999999863
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.8e-15 Score=119.62 Aligned_cols=130 Identities=10% Similarity=0.093 Sum_probs=99.5
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-cc-eeccccccCCCCC-CccCeeeecccccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-FG-LYHDWCESFNTYP-RTYDLLHADHLFSTIK 146 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-~~-~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~ 146 (221)
..+|||+|||+|.++..|++++. +++++|.+ .+++.+.++.- +. ...|. +.+ +++ ++||+|.|..+++|+.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~~~l~~~~ 116 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTI-TDL-SDSPKRWAGLLAWYSLIHMG 116 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCG-GGG-GGSCCCEEEEEEESSSTTCC
T ss_pred CCeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcc-ccc-ccCCCCeEEEEehhhHhcCC
Confidence 67899999999999999999865 46888886 59999988732 11 22343 223 355 9999999999999987
Q ss_pred c-cHHHHHHHhhhhccCCeEEEEEcChh----------------hHHHHHHHHHhcCCeEEEee--cCCCeeEEEEEe
Q 027609 147 K-SLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVRMIY--TNDNQGMLCVHK 205 (221)
Q Consensus 147 ~-d~~~vL~EmdRVLRPGG~~ii~d~~~----------------~~~~i~~i~~~l~W~~~~~~--~~~~e~~l~~~K 205 (221)
. ++..+|.++.|+|||||++++.+... ..+.+.+++....|++.... .......|...|
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~~l~~~~ 194 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTAEA 194 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTTSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCCCcchhhhhhh
Confidence 4 89999999999999999999996322 26889999999999986543 223444444444
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-15 Score=125.69 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=102.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-cc-eeccccccCCCCCCccCeeeecc-ccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-FG-LYHDWCESFNTYPRTYDLLHADH-LFSTI 145 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-~~-~~~d~~e~f~~yp~sFDlVh~~~-v~~h~ 145 (221)
...+|||+|||+|.++..|++++. +++++|.+ .+++.+.++.- +. ...|.. .++ ++++||+|.|.. +++|+
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~~l~~~ 124 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMR-DFS-LGRRFSAVTCMFSSIGHL 124 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTT-TCC-CSCCEEEEEECTTGGGGS
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChH-HCC-ccCCcCEEEEcCchhhhc
Confidence 357899999999999999999864 57888986 59999988732 11 223432 232 369999999998 99998
Q ss_pred cc--cHHHHHHHhhhhccCCeEEEEEcCh---------------------------------------------------
Q 027609 146 KK--SLKAVVAEVDRILRPDGNLILRDDA--------------------------------------------------- 172 (221)
Q Consensus 146 ~~--d~~~vL~EmdRVLRPGG~~ii~d~~--------------------------------------------------- 172 (221)
.+ +...+|.++.|+|||||.+++.+..
T Consensus 125 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (263)
T 3pfg_A 125 AGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGIT 204 (263)
T ss_dssp CHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEE
Confidence 63 7778999999999999999995200
Q ss_pred ----------hhHHHHHHHHHhcCCeEEEee-cCCCeeEEEEEecc
Q 027609 173 ----------ETIVEVEDLVKSLHWDVRMIY-TNDNQGMLCVHKTY 207 (221)
Q Consensus 173 ----------~~~~~i~~i~~~l~W~~~~~~-~~~~e~~l~~~K~~ 207 (221)
...+++++++++-.+++.... ......+++|+|+-
T Consensus 205 ~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a 250 (263)
T 3pfg_A 205 HHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGA 250 (263)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC
T ss_pred EEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCC
Confidence 026889999999999886543 34567899999963
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=128.62 Aligned_cols=96 Identities=16% Similarity=0.138 Sum_probs=78.5
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc---ce-eccccccCCCCC-CccCeeeecc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF---GL-YHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~---~~-~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
..+|||+|||+|.++..|++++. +++++|.+ .+++.+.++ |+. .. ..|. +.+++++ ++||+|+|..
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~v~~~~ 144 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA-QDVASHLETPVDLILFHA 144 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCG-GGTGGGCSSCEEEEEEES
T ss_pred CCEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCH-HHhhhhcCCCceEEEECc
Confidence 57899999999999999999865 46888886 588888776 431 12 2343 3355455 9999999999
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+++|+. ++..+|.|+.|+|||||++++.+.
T Consensus 145 ~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 145 VLEWVA-DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp CGGGCS-CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhccc-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 999998 899999999999999999999864
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.1e-15 Score=118.98 Aligned_cols=117 Identities=13% Similarity=0.186 Sum_probs=87.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---eeccccccCCCCCCccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LYHDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~d~~e~f~~yp~sFDlVh~~~ 140 (221)
....+|||+|||+|.++..|++++. +++++|.+ .+++.+.++ |+.. ...|.. .++ ++++||+|.|..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~D~v~~~~ 105 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLN-NLT-FDRQYDFILSTV 105 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGG-GCC-CCCCEEEEEEES
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchh-hCC-CCCCceEEEEcc
Confidence 3467999999999999999999864 57888886 477776654 3322 223432 233 379999999999
Q ss_pred ccccccc-cHHHHHHHhhhhccCCeEEEEEcCh--------------hhHHHHHHHHHhcCCeEEEe
Q 027609 141 LFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA--------------ETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 141 v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~--------------~~~~~i~~i~~~l~W~~~~~ 192 (221)
+++|+.. ++..+|.++.|+|||||++++.+.. ...+++++++.. |+....
T Consensus 106 ~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~ 170 (199)
T 2xvm_A 106 VLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKY 170 (199)
T ss_dssp CGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEe
Confidence 9999864 7899999999999999998876421 124677787776 887543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-15 Score=123.69 Aligned_cols=98 Identities=16% Similarity=0.265 Sum_probs=79.8
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCc----cc-eeccccccCCCCC-CccCeeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGL----FG-LYHDWCESFNTYP-RTYDLLHA 138 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl----~~-~~~d~~e~f~~yp-~sFDlVh~ 138 (221)
......+|||+|||+|.++..|+++ +. +++++|.+ .+++.+.++.- +. ...|..+ + +++ ++||+|+|
T Consensus 52 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~v~~ 126 (266)
T 3ujc_A 52 ELNENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDILT-K-EFPENNFDLIYS 126 (266)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT-C-CCCTTCEEEEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc-C-CCCCCcEEEEeH
Confidence 3445789999999999999999887 53 57888886 59999988842 11 2334332 3 466 99999999
Q ss_pred ccccccc--cccHHHHHHHhhhhccCCeEEEEEc
Q 027609 139 DHLFSTI--KKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 139 ~~v~~h~--~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
..+++|+ . ++..+|.|+.|+|||||++++.+
T Consensus 127 ~~~l~~~~~~-~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 127 RDAILALSLE-NKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhcChH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999999 5 89999999999999999999996
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-15 Score=120.89 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=74.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-cce-eccccccCCCCCCccCeeeecc-c
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FGL-YHDWCESFNTYPRTYDLLHADH-L 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~~-~~d~~e~f~~yp~sFDlVh~~~-v 141 (221)
...+|||+|||+|.++..|++++. +++++|.+ .+++.+.++ |+ +.. ..|.. .+ +++++||+|.|.. +
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~-~~~~~fD~v~~~~~~ 111 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NL-NINRKFDLITCCLDS 111 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GC-CCSCCEEEEEECTTG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccc-cC-CccCCceEEEEcCcc
Confidence 567999999999999999999864 57888986 588887776 21 122 23332 23 2458999999998 9
Q ss_pred ccccc--ccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIK--KSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~--~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
++|+. .++..+|.++.|+|||||.+++.
T Consensus 112 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99993 28999999999999999999985
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-15 Score=128.14 Aligned_cols=117 Identities=13% Similarity=0.160 Sum_probs=89.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeeccccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKK 147 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~ 147 (221)
...+|||+|||+|.++..|++++.. ++++|.+ .+++.+.++ +.-...|..+.+.+++ ++||+|+|..+++|+..
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~-~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~ 116 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCEGK-FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP 116 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHHTT-SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCG
T ss_pred CCCeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHHhh-cceeeccHHHHhhhcCCCCeeEEEECCchhhCCc
Confidence 3678999999999999999998753 5888986 599999888 3222334322222566 99999999999999984
Q ss_pred -cHHHHHHHhhhhccCCeEEEEEcChhh-------------------HHHHHHHHHhcCCeEE
Q 027609 148 -SLKAVVAEVDRILRPDGNLILRDDAET-------------------IVEVEDLVKSLHWDVR 190 (221)
Q Consensus 148 -d~~~vL~EmdRVLRPGG~~ii~d~~~~-------------------~~~i~~i~~~l~W~~~ 190 (221)
+...+|.|+.|+|||||++++.+.... .+.+.+++.+-.++..
T Consensus 117 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~ 179 (240)
T 3dli_A 117 ERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDV 179 (240)
T ss_dssp GGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEE
Confidence 459999999999999999999864321 2566677777777654
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.3e-15 Score=119.73 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=93.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc-CccceeccccccCCCCCCccCeeeeccccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER-GLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK 147 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR-Gl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~ 147 (221)
...+|||+|||+|.++..|++++. +++++|.+ .+++.+.++ ++.-...|. +.++ .+++||+|.|..+++|+..
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLF-HQLD-AIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCG-GGCC-CCSCEEEEEECSCGGGSCH
T ss_pred CCCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeee-ccCC-CCCcEEEEEecCchhhcCH
Confidence 367999999999999999999864 56888886 589988887 433334443 2344 3499999999999999874
Q ss_pred -cHHHHHHHhhhhccCCeEEEEEcCh---------------hhHHHHHHHHHhcC-CeEEE
Q 027609 148 -SLKAVVAEVDRILRPDGNLILRDDA---------------ETIVEVEDLVKSLH-WDVRM 191 (221)
Q Consensus 148 -d~~~vL~EmdRVLRPGG~~ii~d~~---------------~~~~~i~~i~~~l~-W~~~~ 191 (221)
++..+|.|+.|+|||||++++.... ...+.+.++++.-. ++...
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~ 178 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVA 178 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEE
Confidence 7889999999999999999998432 13678999999888 98754
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=6e-15 Score=126.48 Aligned_cols=99 Identities=13% Similarity=0.176 Sum_probs=79.5
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC--ccceeccccccCCCCCCccCeeeeccccc
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG--LFGLYHDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG--l~~~~~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
......+|||+|||+|.++..|++.+. +++++|.+ .|++.+.++. +.-...|. +.++ ++++||+|+|..+++
T Consensus 54 ~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~ 128 (279)
T 3ccf_A 54 NPQPGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADA-RNFR-VDKPLDAVFSNAMLH 128 (279)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCT-TTCC-CSSCEEEEEEESCGG
T ss_pred CCCCCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECCh-hhCC-cCCCcCEEEEcchhh
Confidence 344578999999999999999998654 56888886 5999888873 11123343 3343 579999999999999
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
|+. |+..+|.|+.|+|||||++++.+.
T Consensus 129 ~~~-d~~~~l~~~~~~LkpgG~l~~~~~ 155 (279)
T 3ccf_A 129 WVK-EPEAAIASIHQALKSGGRFVAEFG 155 (279)
T ss_dssp GCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCc-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 998 899999999999999999999854
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-15 Score=126.88 Aligned_cols=116 Identities=12% Similarity=0.099 Sum_probs=88.0
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Ccc---ce-eccccccCCCCCCccCeeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLF---GL-YHDWCESFNTYPRTYDLLHA 138 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~---~~-~~d~~e~f~~yp~sFDlVh~ 138 (221)
....+|||+|||+|.++..|+++ +. +++++|.+ .+++.+.++ |+. .. ..|+. .++ ++++||+|+|
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~V~~ 109 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA-GYV-ANEKCDVAAC 109 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT-TCC-CSSCEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH-hCC-cCCCCCEEEE
Confidence 34679999999999999999876 43 46888886 588877665 442 22 23432 233 3699999999
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEEcChh----------------------hHHHHHHHHHhcCCeEE
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE----------------------TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~----------------------~~~~i~~i~~~l~W~~~ 190 (221)
..+++|+. ++..+|.|+.|+|||||++++.+... ..+++.+++....++..
T Consensus 110 ~~~~~~~~-~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 182 (256)
T 1nkv_A 110 VGATWIAG-GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 182 (256)
T ss_dssp ESCGGGTS-SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred CCChHhcC-CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeE
Confidence 99999998 89999999999999999999986320 13567777777777653
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-15 Score=125.21 Aligned_cols=104 Identities=19% Similarity=0.339 Sum_probs=81.1
Q ss_pred hhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCC-
Q 027609 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYP- 130 (221)
Q Consensus 60 Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp- 130 (221)
+...+++. ...+|||+|||+|.++..|++++. +++++|.+ .+++.+.++ |+.+ . ..|. +.+ +++
T Consensus 13 ~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~-~~~~ 85 (239)
T 1xxl_A 13 MIKTAECR--AEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA-ESL-PFPD 85 (239)
T ss_dssp HHHHHTCC--TTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT-TBC-CSCT
T ss_pred HHHHhCcC--CCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc-ccC-CCCC
Confidence 33444444 478999999999999999998864 57888886 588877664 4332 2 3343 334 366
Q ss_pred CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 131 RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++||+|+|..+++|+. ++..+|.|+.|+|||||++++.+.
T Consensus 86 ~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFS-DVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp TCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcEEEEEECCchhhcc-CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999999999999998 899999999999999999999853
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-15 Score=124.54 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=94.1
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc----cce-eccccccCCCCC-CccCeeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL----FGL-YHDWCESFNTYP-RTYDLLHA 138 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl----~~~-~~d~~e~f~~yp-~sFDlVh~ 138 (221)
+......+|||+|||+|.++..|++++.. +++++|.+ .+++.+.++.- +.. ..|+. .+ +++ ++||+|+|
T Consensus 89 l~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~-~~~~~~fD~v~~ 164 (254)
T 1xtp_A 89 LPGHGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASME-TA-TLPPNTYDLIVI 164 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGG-GC-CCCSSCEEEEEE
T ss_pred hcccCCCEEEEECCCcCHHHHHHHHhhcC--EEEEEeCCHHHHHHHHHHhccCCceEEEEccHH-HC-CCCCCCeEEEEE
Confidence 33445789999999999999999887522 57888876 58998888732 222 33432 23 366 89999999
Q ss_pred ccccccccc-cHHHHHHHhhhhccCCeEEEEEcChh----------------hHHHHHHHHHhcCCeEEEe
Q 027609 139 DHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 139 ~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~~----------------~~~~i~~i~~~l~W~~~~~ 192 (221)
..+++|++. ++..+|.++.|+|||||++++.+... ..+.+.++++.-.++....
T Consensus 165 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 165 QWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence 999999963 78999999999999999999997410 2477888888888887543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.1e-15 Score=127.49 Aligned_cols=98 Identities=22% Similarity=0.292 Sum_probs=78.3
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Ccc---ce-eccccccCCCCC-CccCee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLF---GL-YHDWCESFNTYP-RTYDLL 136 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~---~~-~~d~~e~f~~yp-~sFDlV 136 (221)
.....+|||+|||+|.++..|+++ +. +++++|.+ .+++.+.++ |+. .. ..|.. .+ +|+ ++||+|
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~-~~~~~~fD~v 154 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EI-PCEDNSYDFI 154 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SC-SSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcc-cC-CCCCCCEeEE
Confidence 345789999999999999999887 54 57888886 588877665 332 22 23432 23 466 899999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+|..+++|+. ++..+|.|+.|+|||||++++.+.
T Consensus 155 ~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 155 WSQDAFLHSP-DKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp EEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EecchhhhcC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999 899999999999999999999963
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=127.06 Aligned_cols=98 Identities=10% Similarity=0.165 Sum_probs=78.0
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCCCccCee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYPRTYDLL 136 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp~sFDlV 136 (221)
......+|||+|||+|.++..|+++ +. +++++|.+ ++++.+.++ |+.. . ..| +..+|++||+|
T Consensus 87 ~~~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d----~~~~~~~fD~v 159 (318)
T 2fk8_A 87 DLKPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG----WEDFAEPVDRI 159 (318)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC----GGGCCCCCSEE
T ss_pred CCCCcCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC----hHHCCCCcCEE
Confidence 3345779999999999999999887 64 57888886 588888776 4322 2 223 22346999999
Q ss_pred eeccccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 137 HADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 137 h~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.|..+++|+.. ++..+|.|+.|+|||||.+++.+.
T Consensus 160 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 160 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99999999953 899999999999999999999864
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.8e-15 Score=127.72 Aligned_cols=97 Identities=11% Similarity=0.140 Sum_probs=76.7
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCCCccCeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp~sFDlVh 137 (221)
.....+|||+|||+|.++..|+++ +. +++++|.+ ++++.+.++ |+.+ . ..|+. .++++||+|+
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~----~~~~~fD~v~ 142 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE----EFDEPVDRIV 142 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGG----GCCCCCSEEE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHH----HcCCCccEEE
Confidence 345789999999999999999987 63 57888986 588877766 4432 2 23432 2389999999
Q ss_pred eccccccccc--------cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 138 ADHLFSTIKK--------SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 138 ~~~v~~h~~~--------d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
|..+++|+++ +...+|.|+.|+|||||.+++.+.
T Consensus 143 ~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 143 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp EESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred EcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 9999999951 347999999999999999999864
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.2e-15 Score=122.88 Aligned_cols=115 Identities=19% Similarity=0.158 Sum_probs=91.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccc----eeccccccCCCCC-CccCeeeeccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFG----LYHDWCESFNTYP-RTYDLLHADHLFS 143 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~----~~~d~~e~f~~yp-~sFDlVh~~~v~~ 143 (221)
...+|||+|||+|.++..|++++. +++++|.+ .+++.+.+++... ...|.. .+ +++ ++||+|+|..+++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~-~~~~~~fD~v~~~~~l~ 127 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLS-SL-PFENEQFEAIMAINSLE 127 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTT-BC-SSCTTCEEEEEEESCTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchh-cC-CCCCCCccEEEEcChHh
Confidence 467999999999999999999865 46888886 5999998884211 223432 23 365 9999999999999
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEEcChh----------------------hHHHHHHHHHhcCCeEE
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILRDDAE----------------------TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~----------------------~~~~i~~i~~~l~W~~~ 190 (221)
|+. ++..+|.|+.|+|||||++++.+... ..+.+++++..-.+++.
T Consensus 128 ~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 195 (242)
T 3l8d_A 128 WTE-EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVV 195 (242)
T ss_dssp SSS-CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEE
T ss_pred hcc-CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEE
Confidence 998 89999999999999999999986211 13568888888888865
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-14 Score=118.40 Aligned_cols=98 Identities=16% Similarity=0.222 Sum_probs=75.3
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc----cc-eeccccccCCCCCCccCeeeecccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL----FG-LYHDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl----~~-~~~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
....+|||+|||+|.++..|+++.- ..+++++|.+ .+++.+.++-- +. ...|. +.+ +++++||+|.|..++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~-~~~~~fD~v~~~~~l 119 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADY-SKY-DFEEKYDMVVSALSI 119 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCT-TTC-CCCSCEEEEEEESCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCCCEEEEeCch-hcc-CCCCCceEEEEeCcc
Confidence 3568999999999999999988721 1257888886 59998888721 11 22332 222 244999999999999
Q ss_pred ccccccHH--HHHHHhhhhccCCeEEEEEc
Q 027609 143 STIKKSLK--AVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 143 ~h~~~d~~--~vL~EmdRVLRPGG~~ii~d 170 (221)
+|+. ++. .+|.|+.|+|||||.+++.+
T Consensus 120 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 120 HHLE-DEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCC-HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9998 555 59999999999999999987
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-14 Score=118.06 Aligned_cols=114 Identities=17% Similarity=0.164 Sum_probs=82.2
Q ss_pred hhhHHHHHhhhhhccc-CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-cce-ecccccc
Q 027609 50 QHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-FGL-YHDWCES 125 (221)
Q Consensus 50 ~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-~~~-~~d~~e~ 125 (221)
..|...... +...+. .. ....+|||+|||+|.++..|++++. +++++|.+ .+++.+.++.- +.. ..|.. .
T Consensus 21 ~~~~~~~~~-~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~-~ 94 (239)
T 3bxo_A 21 KDYAAEASD-IADLVRSRT-PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMR-D 94 (239)
T ss_dssp CCHHHHHHH-HHHHHHHHC-TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTT-T
T ss_pred hhHHHHHHH-HHHHHHHhc-CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHH-H
Confidence 455555543 333333 11 3467999999999999999998754 57888886 59999888731 122 23432 2
Q ss_pred CCCCCCccCeeeec-cccccccc--cHHHHHHHhhhhccCCeEEEEEc
Q 027609 126 FNTYPRTYDLLHAD-HLFSTIKK--SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 126 f~~yp~sFDlVh~~-~v~~h~~~--d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++ ++++||+|.|. .+++|+.+ ++..+|.++.|+|||||.+++.+
T Consensus 95 ~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 95 FR-LGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CC-CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred cc-cCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 32 36899999965 58988852 77899999999999999999984
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=121.61 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=91.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcc------ce-eccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLF------GL-YHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~------~~-~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|++++. .+++++|.+ .+++.+.++.-. .. ..|+ +.++ ++ ++||+|.|..
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~ 154 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFT-PEPDSYDVIWIQW 154 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCC-CCSSCEEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh-hhcC-CCCCCEEEEEEcc
Confidence 478999999999999999988862 257888986 589988877421 12 2342 2233 45 7999999999
Q ss_pred ccccccccH--HHHHHHhhhhccCCeEEEEEcChh---------------hHHHHHHHHHhcCCeEEEe
Q 027609 141 LFSTIKKSL--KAVVAEVDRILRPDGNLILRDDAE---------------TIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 141 v~~h~~~d~--~~vL~EmdRVLRPGG~~ii~d~~~---------------~~~~i~~i~~~l~W~~~~~ 192 (221)
+++|+. ++ ..+|.|+.|+|||||++++.+... ..+++.+++....++....
T Consensus 155 ~l~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 155 VIGHLT-DQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hhhhCC-HHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 999998 54 489999999999999999976421 3678888898888887543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.5e-15 Score=120.04 Aligned_cols=95 Identities=19% Similarity=0.239 Sum_probs=76.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC-ccce-eccccccCCCCC-CccCeeeeccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG-LFGL-YHDWCESFNTYP-RTYDLLHADHLFSTI 145 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG-l~~~-~~d~~e~f~~yp-~sFDlVh~~~v~~h~ 145 (221)
...+|||+|||+|.++..| +.. +++++|.+ .+++.+.++. -+.. ..|. +.+ +++ ++||+|.|..+++|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~~~l~~~ 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYP--QKVGVEPSEAMLAVGRRRAPEATWVRAWG-EAL-PFPGESFDVVLLFTTLEFV 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCS--EEEEECCCHHHHHHHHHHCTTSEEECCCT-TSC-CSCSSCEEEEEEESCTTTC
T ss_pred CCCeEEEECCCCCHhHHhC---CCC--eEEEEeCCHHHHHHHHHhCCCcEEEEccc-ccC-CCCCCcEEEEEEcChhhhc
Confidence 5789999999999999998 431 46888886 5999888873 1122 2342 223 366 899999999999999
Q ss_pred cccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 146 KKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 146 ~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
. ++..+|.|+.|+|||||.+++.+..
T Consensus 109 ~-~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 109 E-DVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp S-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred C-CHHHHHHHHHHHcCCCCEEEEEecC
Confidence 8 8999999999999999999999754
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-14 Score=113.10 Aligned_cols=133 Identities=17% Similarity=0.120 Sum_probs=88.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc--cceeccccccCCCCC-CccCeeeec-c
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL--FGLYHDWCESFNTYP-RTYDLLHAD-H 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl--~~~~~d~~e~f~~yp-~sFDlVh~~-~ 140 (221)
...+|||+|||+|.++..|++++. +|+++|.+ .+++.+.++ |+ +..+++-.+.+..++ ++||+|.++ .
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG 98 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence 367899999999999999999843 46889986 588877765 44 223444344444455 899999887 3
Q ss_pred cccc-------ccccHHHHHHHhhhhccCCeEEEEEcCh------hhHHHHHHHHHhcC---CeEEEee---c-CCCeeE
Q 027609 141 LFST-------IKKSLKAVVAEVDRILRPDGNLILRDDA------ETIVEVEDLVKSLH---WDVRMIY---T-NDNQGM 200 (221)
Q Consensus 141 v~~h-------~~~d~~~vL~EmdRVLRPGG~~ii~d~~------~~~~~i~~i~~~l~---W~~~~~~---~-~~~e~~ 200 (221)
.+.+ ..++...+|.|+.|+|||||.+++.... +..+.+.+.+..+. |.+.... . +....+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 178 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFL 178 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEE
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeE
Confidence 3332 2236778999999999999999987532 23456666666665 6654332 2 233455
Q ss_pred EEEEe
Q 027609 201 LCVHK 205 (221)
Q Consensus 201 l~~~K 205 (221)
++..|
T Consensus 179 ~~i~~ 183 (185)
T 3mti_A 179 VMLEK 183 (185)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55544
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-14 Score=118.84 Aligned_cols=98 Identities=22% Similarity=0.174 Sum_probs=77.6
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC--CCeEEEeccCCCC-CCHHHHHHcCc-cc-eeccccccCCCCCCccCeeeecccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESP-DTLPIIYERGL-FG-LYHDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~--~v~vmnv~~~d~~-~~l~~a~eRGl-~~-~~~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
.....+|||+|||+|.++..|+++ +. +++++|.+ .+++.+.++.- +. ...|. +.++ .+++||+|+|+.++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l 105 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADL-ATWK-PAQKADLLYANAVF 105 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCT-TTCC-CSSCEEEEEEESCG
T ss_pred CCCCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECCh-hhcC-ccCCcCEEEEeCch
Confidence 344679999999999999999887 44 35788886 59999888721 11 22342 3343 24899999999999
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+|+. ++..+|.|+.|+|||||++++.+.
T Consensus 106 ~~~~-~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 106 QWVP-DHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp GGST-THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred hhCC-CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 9998 899999999999999999999864
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=120.06 Aligned_cols=101 Identities=14% Similarity=0.207 Sum_probs=81.2
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc---cc-eeccccccCCCCC-CccCeeeeccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL---FG-LYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl---~~-~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
.....+|||+|||+|.++..|++++.. +++++|.+ .+++.+.++.- +. ...|.. .+ +++ ++||+|.|..+
T Consensus 41 ~~~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~-~~~~~~fD~v~~~~~ 116 (243)
T 3bkw_A 41 EVGGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLD-KL-HLPQDSFDLAYSSLA 116 (243)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGG-GC-CCCTTCEEEEEEESC
T ss_pred ccCCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChh-hc-cCCCCCceEEEEecc
Confidence 345789999999999999999998752 56888886 59999988842 12 223432 23 365 89999999999
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
++|+. ++..+|.++.|+|||||.+++.+.++
T Consensus 117 l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~ 147 (243)
T 3bkw_A 117 LHYVE-DVARLFRTVHQALSPGGHFVFSTEHP 147 (243)
T ss_dssp GGGCS-CHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred ccccc-hHHHHHHHHHHhcCcCcEEEEEeCCc
Confidence 99998 89999999999999999999987553
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=126.14 Aligned_cols=134 Identities=15% Similarity=0.023 Sum_probs=97.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----cc---ce-eccccccCCCCCCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LF---GL-YHDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~---~~-~~d~~e~f~~yp~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|+.......+++++|.+ .+++.+.++. +. .. ..|..+ + +++++||+|.|..
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK-L-DTREGYDLLTSNG 195 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG-C-CCCSCEEEEECCS
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc-C-CccCCeEEEEECC
Confidence 46789999999999999995221112257888986 5888887662 22 12 234332 3 3569999999999
Q ss_pred ccccccccHHH---HHHHhhhhccCCeEEEEEcCh---------------------------------------hhHHHH
Q 027609 141 LFSTIKKSLKA---VVAEVDRILRPDGNLILRDDA---------------------------------------ETIVEV 178 (221)
Q Consensus 141 v~~h~~~d~~~---vL~EmdRVLRPGG~~ii~d~~---------------------------------------~~~~~i 178 (221)
+++|++ ++.. +|.|+.|+|||||++++.+.. ...+.+
T Consensus 196 ~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 196 LNIYEP-DDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred hhhhcC-CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 999998 5665 799999999999999998721 136778
Q ss_pred HHHHHhcCCeEEEee--cCCCeeEEEEEec
Q 027609 179 EDLVKSLHWDVRMIY--TNDNQGMLCVHKT 206 (221)
Q Consensus 179 ~~i~~~l~W~~~~~~--~~~~e~~l~~~K~ 206 (221)
.++++.-.++..... ....-..++++|+
T Consensus 275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 889999999876443 2334567888885
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-14 Score=123.71 Aligned_cols=97 Identities=23% Similarity=0.319 Sum_probs=77.4
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCC-CccCee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYP-RTYDLL 136 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp-~sFDlV 136 (221)
.....+|||+|||+|.++..|+++ +. +++++|.+ .+++.+.++ |+.. . ..|.. .+ +++ ++||+|
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~-~~~~~~fD~v 133 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAM-DL-PFEDASFDAV 133 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SC-CSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccc-cC-CCCCCCccEE
Confidence 345789999999999999999875 43 57888886 588877665 4422 2 23432 23 466 899999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+|..+++|+. ++..+|.|+.|+|||||.+++.+
T Consensus 134 ~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 134 WALESLHHMP-DRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp EEESCTTTSS-CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEechhhhCC-CHHHHHHHHHHHcCCCeEEEEEE
Confidence 9999999998 89999999999999999999986
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-15 Score=124.15 Aligned_cols=117 Identities=8% Similarity=0.056 Sum_probs=84.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC-c-----------------cce-eccccccCCCC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG-L-----------------FGL-YHDWCESFNTY 129 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG-l-----------------~~~-~~d~~e~f~~y 129 (221)
...+|||+|||+|.++..|++++. +|+++|.+ .|++.+.++. . +.. ..|.. .+++.
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~-~l~~~ 97 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF-ALTAR 97 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS-SSTHH
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc-cCCcc
Confidence 367899999999999999999874 57999987 5999998871 1 111 23422 23222
Q ss_pred C-CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEE-EEE-cCh-------h---hHHHHHHHHHhcCCeEEE
Q 027609 130 P-RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNL-ILR-DDA-------E---TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 130 p-~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~-ii~-d~~-------~---~~~~i~~i~~~l~W~~~~ 191 (221)
+ ++||+|.|..+|+|++. +...++.|+.|+|||||.+ ++. +.. + ..+++++++.. .|++..
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~ 172 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTK 172 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEE
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEE
Confidence 2 69999999999998874 5677999999999999983 332 211 1 25677777777 777643
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-14 Score=113.13 Aligned_cols=130 Identities=16% Similarity=0.225 Sum_probs=92.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc----e-eccccccCCCCC-CccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG----L-YHDWCESFNTYP-RTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~----~-~~d~~e~f~~yp-~sFDlVh~ 138 (221)
...+|||+|||+|.++..+++++. +++++|.+ .+++.+.++ |+.. . ..|+.+ +++ ++||+|.|
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~ 125 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE---NVKDRKYNKIIT 125 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT---TCTTSCEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc---ccccCCceEEEE
Confidence 577999999999999999988843 57888876 577777765 4332 2 234322 334 89999999
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEEcChhh-HHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~-~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
+..+++-..+...++.++.|+|||||.+++.+.... ...+.+.++..-+++......+.-.++.++|
T Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 126 NPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEETTEEEEEEEC
T ss_pred CCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecCCcEEEEEEee
Confidence 988876333788999999999999999999976543 3445555555544544444444556666655
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.2e-15 Score=119.92 Aligned_cols=101 Identities=15% Similarity=0.288 Sum_probs=79.0
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc----cce-eccccccCCCCCCccCeeeec
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL----FGL-YHDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl----~~~-~~d~~e~f~~yp~sFDlVh~~ 139 (221)
+......+|||+|||+|.++..|++++ .+++++|.+ .+++.+.++.- +.. ..|. +.++ .+++||+|.|.
T Consensus 47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~ 121 (216)
T 3ofk_A 47 LSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDI-LQFS-TAELFDLIVVA 121 (216)
T ss_dssp TTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCT-TTCC-CSCCEEEEEEE
T ss_pred cccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcch-hhCC-CCCCccEEEEc
Confidence 445567899999999999999999885 368899986 59998888732 122 2343 2233 23999999999
Q ss_pred cccccccccH---HHHHHHhhhhccCCeEEEEEcCh
Q 027609 140 HLFSTIKKSL---KAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 140 ~v~~h~~~d~---~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.+++|+. ++ ..+|.++.|+|||||++++++..
T Consensus 122 ~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 122 EVLYYLE-DMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp SCGGGSS-SHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cHHHhCC-CHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 9999998 55 57799999999999999998643
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.6e-14 Score=110.61 Aligned_cols=132 Identities=11% Similarity=0.115 Sum_probs=98.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-cce-eccccccCCCCC-CccCeeeec-ccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-FGL-YHDWCESFNTYP-RTYDLLHAD-HLFST 144 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-~~~-~~d~~e~f~~yp-~sFDlVh~~-~v~~h 144 (221)
...+|||+|||+|.++..|++++. +++++|.+ .+++.+.++.- +.. ..|..+ + +++ ++||+|.|+ .+++|
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~-~~~~~~~D~i~~~~~~~~~ 120 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSV-D-QISETDFDLIVSAGNVMGF 120 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-S-CCCCCCEEEEEECCCCGGG
T ss_pred CCCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEccccc-C-CCCCCceeEEEECCcHHhh
Confidence 467999999999999999999864 57888886 58888887731 122 234322 2 355 899999998 78887
Q ss_pred ccc-cHHHHHHHhhhhccCCeEEEEEcChh---hHHHHHHHHHhcCCeEEEeec---------CCCeeEEEEEec
Q 027609 145 IKK-SLKAVVAEVDRILRPDGNLILRDDAE---TIVEVEDLVKSLHWDVRMIYT---------NDNQGMLCVHKT 206 (221)
Q Consensus 145 ~~~-d~~~vL~EmdRVLRPGG~~ii~d~~~---~~~~i~~i~~~l~W~~~~~~~---------~~~e~~l~~~K~ 206 (221)
... +...+|.++.|+|||||.+++..... ..+.+.+++....+++..... ...--+++++|+
T Consensus 121 ~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 121 LAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred cChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 753 67899999999999999999986543 367888888888888764321 124556777764
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.3e-15 Score=124.61 Aligned_cols=97 Identities=20% Similarity=0.274 Sum_probs=76.6
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeecccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIK 146 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~ 146 (221)
....+|||+|||+|.++..|++.+. +++++|.+ .+++.+.++.-+..+..-++.+ +++ ++||+|+|..+++|+.
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~ 108 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYAENL-ALPDKSVDGVISILAIHHFS 108 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCTTSC-CSCTTCBSEEEEESCGGGCS
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECchhhC-CCCCCCEeEEEEcchHhhcc
Confidence 4578999999999999999998764 56888886 4777666664222333223334 466 9999999999999998
Q ss_pred ccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 147 KSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 147 ~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++..+|.|+.|+|| ||++++.+.
T Consensus 109 -~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 109 -HLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp -SHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred -CHHHHHHHHHHHhC-CcEEEEEEc
Confidence 89999999999999 998888754
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-14 Score=122.33 Aligned_cols=119 Identities=11% Similarity=0.099 Sum_probs=89.0
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc--------------------------------
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-------------------------------- 115 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-------------------------------- 115 (221)
....+|||+|||+|.++..|+.++. .+++++|.+ .+++.+.++.-
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 4568999999999999999988764 368999987 58888766521
Q ss_pred ---c-ce-eccccccCCCC-C---CccCeeeeccccc----cccccHHHHHHHhhhhccCCeEEEEEcChh---------
Q 027609 116 ---F-GL-YHDWCESFNTY-P---RTYDLLHADHLFS----TIKKSLKAVVAEVDRILRPDGNLILRDDAE--------- 173 (221)
Q Consensus 116 ---~-~~-~~d~~e~f~~y-p---~sFDlVh~~~v~~----h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~--------- 173 (221)
+ .. ..|..+ ..++ + ++||+|.|..+++ +.. ++..+|.++.|+|||||++++.+...
T Consensus 133 ~~~v~~~~~~d~~~-~~~~~~~~~~~fD~v~~~~~l~~~~~~~~-~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~ 210 (265)
T 2i62_A 133 RRAIKQVLKCDVTQ-SQPLGGVSLPPADCLLSTLCLDAACPDLP-AYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQ 210 (265)
T ss_dssp HHHEEEEEECCTTS-SSTTTTCCCCCEEEEEEESCHHHHCSSHH-HHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred hhhheeEEEeeecc-CCCCCccccCCccEEEEhhhhhhhcCChH-HHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCc
Confidence 1 11 234332 2221 3 7999999999998 444 79999999999999999999986211
Q ss_pred -------hHHHHHHHHHhcCCeEEE
Q 027609 174 -------TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 174 -------~~~~i~~i~~~l~W~~~~ 191 (221)
..+.+.+++....+++..
T Consensus 211 ~~~~~~~~~~~~~~~l~~aGf~~~~ 235 (265)
T 2i62_A 211 KFSSLPLGWETVRDAVEEAGYTIEQ 235 (265)
T ss_dssp EEECCCCCHHHHHHHHHHTTCEEEE
T ss_pred cccccccCHHHHHHHHHHCCCEEEE
Confidence 245888888888888754
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-15 Score=126.42 Aligned_cols=98 Identities=13% Similarity=0.228 Sum_probs=77.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c----cc---eeccccccCCC--CC-CccC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L----FG---LYHDWCESFNT--YP-RTYD 134 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l----~~---~~~d~~e~f~~--yp-~sFD 134 (221)
...+|||+|||+|.++..|++++. +++++|.+ .+++.+.++. . .. ...|+.+ ++. ++ ++||
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~fD 132 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT-LDKDVPAGDGFD 132 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG-HHHHSCCTTCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh-CccccccCCCeE
Confidence 467999999999999999999975 67899987 5898887652 1 11 1223221 210 45 9999
Q ss_pred eeeec-ccccccccc-------HHHHHHHhhhhccCCeEEEEEcCh
Q 027609 135 LLHAD-HLFSTIKKS-------LKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 135 lVh~~-~v~~h~~~d-------~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+|+|. .+++|+. + +..+|.|+.|+|||||++++...+
T Consensus 133 ~V~~~g~~l~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 133 AVICLGNSFAHLP-DSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEEECTTCGGGSC-CSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEEcChHHhhcC-ccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99998 8999998 7 999999999999999999999765
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=118.37 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=76.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-------cce-eccccccCCCCC-CccCe
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-------FGL-YHDWCESFNTYP-RTYDL 135 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-------~~~-~~d~~e~f~~yp-~sFDl 135 (221)
...+|||+|||+|.++..|++++-. .+++++|.+ .+++.+.++ |+ +.. ..|. + ..+++ ++||+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~-~~~~~~~~fD~ 105 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL-T-YQDKRFHGYDA 105 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT-T-SCCGGGCSCSE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc-c-cccccCCCcCE
Confidence 4679999999999999999987521 257888986 588888776 11 112 2332 1 23344 89999
Q ss_pred eeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 136 LHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 136 Vh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
|.|..+++|+.. +...+|.++.|+|||||.+++.+..+
T Consensus 106 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 144 (217)
T 3jwh_A 106 ATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIE 144 (217)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHH
T ss_pred EeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcc
Confidence 999999999983 33899999999999999888886643
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=123.46 Aligned_cols=120 Identities=12% Similarity=0.039 Sum_probs=86.7
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC------c--------------------------
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG------L-------------------------- 115 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG------l-------------------------- 115 (221)
....+|||+|||+|.++..++..++. +|+++|.+ .|++.+.++. +
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~~--~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhhc--ceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 35678999999999888877777643 68999987 5888776531 0
Q ss_pred ---c--ceeccccc--cCCCCC-CccCeeeecccccccc---ccHHHHHHHhhhhccCCeEEEEEcChh-----------
Q 027609 116 ---F--GLYHDWCE--SFNTYP-RTYDLLHADHLFSTIK---KSLKAVVAEVDRILRPDGNLILRDDAE----------- 173 (221)
Q Consensus 116 ---~--~~~~d~~e--~f~~yp-~sFDlVh~~~v~~h~~---~d~~~vL~EmdRVLRPGG~~ii~d~~~----------- 173 (221)
+ -...|..+ ++.+.+ .+||+|.|+.+++|.. +++..+|.++.|+|||||+|++++...
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~ 211 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF 211 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEe
Confidence 0 01223322 122233 7999999999999862 277899999999999999999995211
Q ss_pred -----hHHHHHHHHHhcCCeEE
Q 027609 174 -----TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 174 -----~~~~i~~i~~~l~W~~~ 190 (221)
..+.+.+++.+-..++.
T Consensus 212 ~~~~~~~~~l~~~l~~aGF~i~ 233 (263)
T 2a14_A 212 SCVALEKGEVEQAVLDAGFDIE 233 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEE
T ss_pred eccccCHHHHHHHHHHCCCEEE
Confidence 25678888888777764
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-14 Score=115.46 Aligned_cols=96 Identities=17% Similarity=0.286 Sum_probs=76.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c-------cce-eccccccCCCCC-CccCe
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L-------FGL-YHDWCESFNTYP-RTYDL 135 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l-------~~~-~~d~~e~f~~yp-~sFDl 135 (221)
...+|||+|||+|.++..|++++. +++++|.+ .+++.+.++. + +.. ..|. +.+ +++ ++||+
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~~-~~~~~~~D~ 104 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA-SSL-SFHDSSFDF 104 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT-TSC-CSCTTCEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc-ccc-CCCCCceeE
Confidence 467899999999999999999864 57888886 5888888752 2 112 2232 223 355 99999
Q ss_pred eeeccccccccccHH---HHHHHhhhhccCCeEEEEEcC
Q 027609 136 LHADHLFSTIKKSLK---AVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 136 Vh~~~v~~h~~~d~~---~vL~EmdRVLRPGG~~ii~d~ 171 (221)
|.|..+++|+. ++. .+|.++.|+|||||.+++.+.
T Consensus 105 v~~~~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 105 AVMQAFLTSVP-DPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp EEEESCGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEcchhhcCC-CHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 99999999998 677 999999999999999999853
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-14 Score=119.75 Aligned_cols=116 Identities=15% Similarity=0.189 Sum_probs=88.0
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc----eeccccccCCCCC-CccCeeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG----LYHDWCESFNTYP-RTYDLLHA 138 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~----~~~d~~e~f~~yp-~sFDlVh~ 138 (221)
....+|||+|||+|.++..|++++. .+++++|.+ .+++.+.++ |+.+ ...|+ +.+ +++ ++||+|+|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~-~~~~~~fD~i~~ 120 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM-DDL-PFRNEELDLIWS 120 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSC-CCCTTCEEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh-hhC-CCCCCCEEEEEE
Confidence 3578999999999999999999843 157888886 588877665 4422 23343 334 366 99999999
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEEcCh---------------------hhHHHHHHHHHhcCCeEE
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA---------------------ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~---------------------~~~~~i~~i~~~l~W~~~ 190 (221)
..+++|+ ++..+|.++.|+|||||++++.+.. ...+.+.+++.+-.++..
T Consensus 121 ~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 191 (267)
T 3kkz_A 121 EGAIYNI--GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPV 191 (267)
T ss_dssp SSCGGGT--CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEE
T ss_pred cCCceec--CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEE
Confidence 9999988 6899999999999999999998642 014566677777777764
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=121.62 Aligned_cols=99 Identities=21% Similarity=0.307 Sum_probs=79.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccce-eccccccCCCCC-CccCeeeecccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGL-YHDWCESFNTYP-RTYDLLHADHLFSTIK 146 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~-~~d~~e~f~~yp-~sFDlVh~~~v~~h~~ 146 (221)
...+|||+|||+|.++..|++++. +++++|.+ .+++.+.++..... ..|. +.+ +++ ++||+|.|..++.|+.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~~~~~~~~ 128 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKA-EDL-PFPSGAFEAVLALGDVLSYV 128 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCT-TSC-CSCTTCEEEEEECSSHHHHC
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcH-HHC-CCCCCCEEEEEEcchhhhcc
Confidence 567999999999999999999864 57888986 59999988854222 2332 223 365 8999999998888885
Q ss_pred ccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 147 KSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 147 ~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
.++..+|.|+.|+|||||.+++.....
T Consensus 129 ~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 129 ENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 589999999999999999999987654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-14 Score=120.64 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=77.2
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC---ccc---eeccccccCCCCC-CccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG---LFG---LYHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG---l~~---~~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
....+|||+|||+|.++..|++++. +++++|.+ .+++.+.++- ..+ ...|. +.+ +++ ++||+|+|..
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~~ 112 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAI-PLPDESVHGVIVVH 112 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT-TSC-CSCTTCEEEEEEES
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEccc-ccC-CCCCCCeeEEEECC
Confidence 3467999999999999999999864 57888886 5999888872 111 23343 333 366 8999999999
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+++|+. |+..+|.|+.|+|||||++++.
T Consensus 113 ~l~~~~-~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 113 LWHLVP-DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CGGGCT-THHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhcC-CHHHHHHHHHHHCCCCcEEEEE
Confidence 999998 8999999999999999999987
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=113.82 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=89.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCC-CccCeeeeccccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKK 147 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~ 147 (221)
....+|||+|||+|.++..|. . +++++|.+.. .+.-...|. +.+ +++ ++||+|.|..+++ +.
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~---~---~v~~~D~s~~-------~~~~~~~d~-~~~-~~~~~~fD~v~~~~~l~-~~- 128 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR---N---PVHCFDLASL-------DPRVTVCDM-AQV-PLEDESVDVAVFCLSLM-GT- 128 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC---S---CEEEEESSCS-------STTEEESCT-TSC-SCCTTCEEEEEEESCCC-SS-
T ss_pred CCCCeEEEECCcCCHHHHHhh---c---cEEEEeCCCC-------CceEEEecc-ccC-CCCCCCEeEEEEehhcc-cc-
Confidence 346789999999999999984 1 3456665432 111123342 223 466 8999999999996 45
Q ss_pred cHHHHHHHhhhhccCCeEEEEEcChh---hHHHHHHHHHhcCCeEEEeec-CCCeeEEEEEec
Q 027609 148 SLKAVVAEVDRILRPDGNLILRDDAE---TIVEVEDLVKSLHWDVRMIYT-NDNQGMLCVHKT 206 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~d~~~---~~~~i~~i~~~l~W~~~~~~~-~~~e~~l~~~K~ 206 (221)
++..+|.|+.|+|||||.+++.+... ..+.+.+++....+++...+. ...-.+++++|.
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKT 191 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEEC
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEec
Confidence 89999999999999999999998665 468889999999998765443 334578888886
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.4e-14 Score=116.05 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=89.9
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-------cce-eccccccCCCCCCccCeeeecccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-------FGL-YHDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-------~~~-~~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
.+|||+|||+|.++..|++.+. +++++|.+ .+++.+.++.- +.. ..|..+ ++ .+.+||+|.|..++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-WR-PTELFDLIFDYVFF 142 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-CC-CSSCEEEEEEESST
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-CC-CCCCeeEEEEChhh
Confidence 5999999999999999988753 57899986 58888877731 112 234322 22 23899999999999
Q ss_pred ccccc-cHHHHHHHhhhhccCCeEEEEEcChh-----------hHHHHHHHHHhcCCeEEEe
Q 027609 143 STIKK-SLKAVVAEVDRILRPDGNLILRDDAE-----------TIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 143 ~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~~-----------~~~~i~~i~~~l~W~~~~~ 192 (221)
+|++. ++..+|.++.|+|||||++++.+... ..+.+.+++..-.|+....
T Consensus 143 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 143 CAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp TTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEE
Confidence 99875 78999999999999999999874321 2578999999999987643
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=124.77 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=78.1
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-cc-eeccccccCCCCCCccCeeeeccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FG-LYHDWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~-~~~d~~e~f~~yp~sFDlVh~~~v 141 (221)
.+..+|||+|||+|.++..|++.--...+++++|.+ .+++.+.++ +. +. ...|.. .+ +++++||+|+|..+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~-~~~~~fD~v~~~~~ 98 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EI-ELNDKYDIAICHAF 98 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT-TC-CCSSCEEEEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh-hc-CcCCCeeEEEECCh
Confidence 347899999999999999998871101256888886 588877765 11 11 233433 23 35799999999999
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
++|+. ++..+|.|+.|+|||||++++.+..
T Consensus 99 l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 99 LLHMT-TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGGCS-SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhcCC-CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 99998 8999999999999999999999866
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-14 Score=122.47 Aligned_cols=98 Identities=14% Similarity=0.282 Sum_probs=77.2
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---eeccccccCCCCC-CccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LYHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
....+|||+|||+|.++..|+++.-- .+++++|.+ .+++.+.++ |+.. ...|.. .+ +++ ++||+|+|.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~-~~~~~~fD~v~~~ 112 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIF-SL-PFEDSSFDHIFVC 112 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGG-GC-CSCTTCEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccc-cC-CCCCCCeeEEEEe
Confidence 35789999999999999999887311 256888886 588877765 4432 223432 23 355 999999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.+++|+. ++..+|.++.|+|||||++++.+
T Consensus 113 ~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 113 FVLEHLQ-SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp SCGGGCS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhcC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999 89999999999999999999986
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-14 Score=123.20 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=74.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcc-----c-eeccccccCCCCC-CccCeeeec-
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLF-----G-LYHDWCESFNTYP-RTYDLLHAD- 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~-----~-~~~d~~e~f~~yp-~sFDlVh~~- 139 (221)
....+|||+|||+|.++..|+++.. -+++.+|.+ ++++.|.++.-- . ...|+.+-..+++ ++||.|.+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~ 136 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEee
Confidence 4578999999999999999988753 257888886 599988876421 1 2234433344566 889998754
Q ss_pred ----cccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 140 ----HLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 140 ----~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
..+.|+. ++..++.|+.|||||||.|++.+
T Consensus 137 ~~~~~~~~~~~-~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 137 YPLSEETWHTH-QFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEECC
T ss_pred eecccchhhhc-chhhhhhhhhheeCCCCEEEEEe
Confidence 3445666 89999999999999999999864
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-14 Score=117.52 Aligned_cols=110 Identities=21% Similarity=0.261 Sum_probs=87.0
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeecccccccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKS 148 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d 148 (221)
..+|||+|||+|.++..|+.+ +++|.+ .+++.+.++++.-...|. +.+ +++ ++||+|.|..+++|+. +
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~~~l~~~~-~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVFVLKGTA-ENL-PLKDESFDFALMVTTICFVD-D 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCEEEECBT-TBC-CSCTTCEEEEEEESCGGGSS-C
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCEEEEccc-ccC-CCCCCCeeEEEEcchHhhcc-C
Confidence 679999999999999999776 566665 589999888543233443 333 355 8999999999999998 8
Q ss_pred HHHHHHHhhhhccCCeEEEEEcChh------------------------hHHHHHHHHHhcCCeEE
Q 027609 149 LKAVVAEVDRILRPDGNLILRDDAE------------------------TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii~d~~~------------------------~~~~i~~i~~~l~W~~~ 190 (221)
+..+|.++.|+|||||++++.+... ..+++.+++....++..
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 183 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 183 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEE
Confidence 9999999999999999999985321 24677788888888764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-14 Score=122.56 Aligned_cols=118 Identities=15% Similarity=0.119 Sum_probs=83.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC------------------ccc-------------
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG------------------LFG------------- 117 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG------------------l~~------------- 117 (221)
...+|||+|||+|.++..++..+.. +|+++|.+ .|++.+.++- +.+
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCS--EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCC--eEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 5689999999999954434332222 67999987 5888776631 001
Q ss_pred ------eeccccccCC----CCC-CccCeeeecccccc----ccccHHHHHHHhhhhccCCeEEEEEcCh----------
Q 027609 118 ------LYHDWCESFN----TYP-RTYDLLHADHLFST----IKKSLKAVVAEVDRILRPDGNLILRDDA---------- 172 (221)
Q Consensus 118 ------~~~d~~e~f~----~yp-~sFDlVh~~~v~~h----~~~d~~~vL~EmdRVLRPGG~~ii~d~~---------- 172 (221)
...|..+.++ .++ ++||+|.|+.+|+| .. ++..+|.|+.|+|||||+|++.+..
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~-~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~ 227 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLA-SFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA 227 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHH-HHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHH-HHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCe
Confidence 0114332122 144 78999999999998 44 7999999999999999999997311
Q ss_pred ------hhHHHHHHHHHhcCCeEE
Q 027609 173 ------ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 173 ------~~~~~i~~i~~~l~W~~~ 190 (221)
...+.+.+++..-.++..
T Consensus 228 ~~~~~~~~~~~l~~~l~~aGf~~~ 251 (289)
T 2g72_A 228 RLTVVPVSEEEVREALVRSGYKVR 251 (289)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEE
T ss_pred eeeeccCCHHHHHHHHHHcCCeEE
Confidence 136788888888888764
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=113.19 Aligned_cols=93 Identities=18% Similarity=0.291 Sum_probs=72.5
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c-cce-eccccccCCCCCCccCeeeecc-cc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L-FGL-YHDWCESFNTYPRTYDLLHADH-LF 142 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l-~~~-~~d~~e~f~~yp~sFDlVh~~~-v~ 142 (221)
..+|||+|||+|.++..|+++ .+++++|.+ .+++.+.++. . +.. ..|..+ + +++++||+|.|.. ++
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~-~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE-L-ELPEPVDAITILCDSL 107 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG-C-CCSSCEEEEEECTTGG
T ss_pred CCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh-c-CCCCCcCEEEEeCCch
Confidence 479999999999999999887 267889986 5888887762 1 122 234322 2 3458999999986 89
Q ss_pred ccccc--cHHHHHHHhhhhccCCeEEEEE
Q 027609 143 STIKK--SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 143 ~h~~~--d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+|+.+ ++..+|.++.|+|||||.+++.
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 98842 7889999999999999999985
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=118.80 Aligned_cols=116 Identities=15% Similarity=0.233 Sum_probs=86.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-cc-eeccccccCCCCCCccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FG-LYHDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~-~~~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
...+|||+|||+|.++..|++++. +++++|.+ .+++.+.++ |+ +. ...|..+ ++ ++++||+|.|..+|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~-~~~~fD~i~~~~~~ 194 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINA-AN-IQENYDFIVSTVVF 194 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGG-CC-CCSCEEEEEECSSG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccc-cc-ccCCccEEEEccch
Confidence 578999999999999999999975 57888886 478776665 33 11 2234322 32 36999999999999
Q ss_pred ccccc-cHHHHHHHhhhhccCCeEEEEEcCh--------------hhHHHHHHHHHhcCCeEEEe
Q 027609 143 STIKK-SLKAVVAEVDRILRPDGNLILRDDA--------------ETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 143 ~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~--------------~~~~~i~~i~~~l~W~~~~~ 192 (221)
+|+.. +...+|.++.|+|||||.+++.... ...+++.+++.. |++...
T Consensus 195 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 195 MFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp GGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEE
Confidence 99864 6779999999999999997775321 114567777766 887644
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-14 Score=119.48 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=87.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
...+|||+|||+|.++..|+++... +++++|.+ .+++.+.++ |+.+ . ..|. +.+ +++ ++||+|+|.
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~ 121 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNL-PFQNEELDLIWSE 121 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSC-SSCTTCEEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhC-CCCCCCEEEEEec
Confidence 4669999999999999999987432 67888886 488876665 4422 2 3343 334 366 999999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcCh---------------------hhHHHHHHHHHhcCCeEEE
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA---------------------ETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~---------------------~~~~~i~~i~~~l~W~~~~ 191 (221)
.+++|+ ++..+|.|+.|+|||||++++.+.. ...+.+.+++..-.++...
T Consensus 122 ~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (257)
T 3f4k_A 122 GAIYNI--GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTA 192 (257)
T ss_dssp SCSCCC--CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEE
T ss_pred ChHhhc--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEE
Confidence 999987 5899999999999999999999731 1235667777777777643
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-14 Score=129.93 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=90.6
Q ss_pred CCCCeEEeecCcchHHHHHHhhC--CCeEEEeccCCCC-CCHHHHHHc---------C-c----cce-eccccccCC---
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESP-DTLPIIYER---------G-L----FGL-YHDWCESFN--- 127 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~--~v~vmnv~~~d~~-~~l~~a~eR---------G-l----~~~-~~d~~e~f~--- 127 (221)
....+|||+|||+|.++..|++. +- .+++++|.+ .+++.+.++ | + +.. ..|.. .+.
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~-~l~~~~ 158 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEH--GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIE-NLATAE 158 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTT--CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTT-CGGGCB
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHH-Hhhhcc
Confidence 35779999999999999998875 22 257889986 599988887 5 2 112 23432 221
Q ss_pred --CCC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh-----------------------hhHHHHHHH
Q 027609 128 --TYP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-----------------------ETIVEVEDL 181 (221)
Q Consensus 128 --~yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-----------------------~~~~~i~~i 181 (221)
+++ ++||+|+|+.+++|+. ++..+|.|+.|+|||||++++.+.. ...+.+.++
T Consensus 159 ~~~~~~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (383)
T 4fsd_A 159 PEGVPDSSVDIVISNCVCNLST-NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRL 237 (383)
T ss_dssp SCCCCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHH
T ss_pred cCCCCCCCEEEEEEccchhcCC-CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHH
Confidence 566 8999999999999998 8999999999999999999998632 113778888
Q ss_pred HHhcCCeEE
Q 027609 182 VKSLHWDVR 190 (221)
Q Consensus 182 ~~~l~W~~~ 190 (221)
+.+-.++..
T Consensus 238 l~~aGF~~v 246 (383)
T 4fsd_A 238 VAEAGFRDV 246 (383)
T ss_dssp HHHTTCCCE
T ss_pred HHHCCCceE
Confidence 888888643
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=119.24 Aligned_cols=135 Identities=15% Similarity=0.229 Sum_probs=95.7
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cccc----eeccccccCCCCCCccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLFG----LYHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl~~----~~~d~~e~f~~yp~sFDlVh 137 (221)
+......+|||+|||+|.++..|+++.-. ..++.+|.+.+++.+.++ |+.+ ..+|. +.++|.+||+|.
T Consensus 165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~p~~~D~v~ 240 (332)
T 3i53_A 165 YDWAALGHVVDVGGGSGGLLSALLTAHED-LSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSF---FDPLPAGAGGYV 240 (332)
T ss_dssp SCCGGGSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCCCSCSEEE
T ss_pred CCCCCCCEEEEeCCChhHHHHHHHHHCCC-CeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCC---CCCCCCCCcEEE
Confidence 44456789999999999999999875211 135666776677777654 4422 23343 245666999999
Q ss_pred eccccccccc-cHHHHHHHhhhhccCCeEEEEEcChh----------------------hHHHHHHHHHhcCCeEEEee-
Q 027609 138 ADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDAE----------------------TIVEVEDLVKSLHWDVRMIY- 193 (221)
Q Consensus 138 ~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~~----------------------~~~~i~~i~~~l~W~~~~~~- 193 (221)
|..+++|+.+ +...+|.++.|+|||||++++.|... ..+++++++++-.++..-..
T Consensus 241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9999999993 24899999999999999999987420 14567777777788765332
Q ss_pred cCCCeeEEEEEe
Q 027609 194 TNDNQGMLCVHK 205 (221)
Q Consensus 194 ~~~~e~~l~~~K 205 (221)
... ..++.|+|
T Consensus 321 ~~~-~~vie~r~ 331 (332)
T 3i53_A 321 ISY-VSIVEMTA 331 (332)
T ss_dssp CSS-SEEEEEEE
T ss_pred CCC-cEEEEEee
Confidence 223 66777765
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=111.77 Aligned_cols=124 Identities=18% Similarity=0.242 Sum_probs=90.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCC-CCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTY-PRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~y-p~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|++.+.. +++++|.+ .+++.+.++ |+.+ .+ .| +..+ +++||+|.|+.
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d----~~~~~~~~fD~i~~~~ 133 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLGAK--SVLATDISDESMTAAEENAALNGIYDIALQKTS----LLADVDGKFDLIVANI 133 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCCCEEEESS----TTTTCCSCEEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEecc----ccccCCCCceEEEECC
Confidence 3679999999999999999988642 57888886 588877775 4432 22 23 2234 49999999997
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeEEEeecCCCeeEEEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVRMIYTNDNQGMLCV 203 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~ 203 (221)
.+++ ...++.++.|+|||||++++.+.. ...+.+.+++....++.......+.=..++.
T Consensus 134 ~~~~----~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~w~~~~~ 193 (205)
T 3grz_A 134 LAEI----LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRAGRWIGLAI 193 (205)
T ss_dssp CHHH----HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEETTEEEEEE
T ss_pred cHHH----HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeeccCCEEEEEE
Confidence 7764 468999999999999999998543 3477888888888888765443333333333
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.1e-14 Score=120.91 Aligned_cols=117 Identities=10% Similarity=-0.001 Sum_probs=86.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC-c--------------------cc---eeccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG-L--------------------FG---LYHDWCE 124 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG-l--------------------~~---~~~d~~e 124 (221)
...+|||+|||+|.++..|+++|. +|+++|.+ .+++.+.++- + .. ...|..+
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 467899999999999999999975 57999997 5999887652 1 11 1234322
Q ss_pred cCCCCC-CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcC---------h---hhHHHHHHHHHhcCCeEE
Q 027609 125 SFNTYP-RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD---------A---ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 125 ~f~~yp-~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~---------~---~~~~~i~~i~~~l~W~~~ 190 (221)
+++-+ ++||+|.+..+|+|++. +...++.|+.|+|||||.+++.+. . -..+++.+++.. .|++.
T Consensus 145 -l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~ 222 (252)
T 2gb4_A 145 -LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQ 222 (252)
T ss_dssp -GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred -CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEE
Confidence 32222 89999999999998875 677899999999999999964321 1 125778888776 48765
Q ss_pred E
Q 027609 191 M 191 (221)
Q Consensus 191 ~ 191 (221)
.
T Consensus 223 ~ 223 (252)
T 2gb4_A 223 C 223 (252)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=112.54 Aligned_cols=96 Identities=24% Similarity=0.353 Sum_probs=74.6
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC-----ccc-eeccccccCCCCC-CccCeeeecccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG-----LFG-LYHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG-----l~~-~~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
..+|||+|||+|.++..|++++. +++++|.+ .+++.+.++. -+. ...|..+ + +++ ++||+|.|+.++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-L-SFEDKTFDYVIFIDSI 113 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS-C-CSCTTCEEEEEEESCG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc-C-CCCCCcEEEEEEcCch
Confidence 67999999999999999999865 67888886 5888777652 122 2334322 2 355 899999999984
Q ss_pred c--cccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 143 S--TIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 143 ~--h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+ |.. ++..+|.++.|+|||||.+++.+..
T Consensus 114 ~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 114 VHFEPL-ELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GGCCHH-HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HhCCHH-HHHHHHHHHHHHcCCCcEEEEEecC
Confidence 4 444 7899999999999999999999765
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=120.59 Aligned_cols=99 Identities=9% Similarity=0.006 Sum_probs=77.1
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccc-eeccccccCC-----CCCCccCeeeecc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFG-LYHDWCESFN-----TYPRTYDLLHADH 140 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~-~~~d~~e~f~-----~yp~sFDlVh~~~ 140 (221)
.....+|||+|||+|.++..|++++. .|+++|.+ .|++.+.++.-.. ...++.+ +. ..+++||+|.|+.
T Consensus 43 l~~g~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~-~~~~~~~~~~~~fD~Vv~~~ 118 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLD-ITAEIPKELAGHFDFVLNDR 118 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECC-TTSCCCGGGTTCCSEEEEES
T ss_pred CCCcCEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeee-cccccccccCCCccEEEEhh
Confidence 34478999999999999999999875 47899987 5999999884221 2223322 21 1247999999999
Q ss_pred ccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 141 LFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 141 v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+++|+.. +...+|.+|.|+| |||.++++-.
T Consensus 119 ~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 119 LINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred hhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 9999864 6778999999999 9999999954
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-14 Score=125.59 Aligned_cols=101 Identities=10% Similarity=0.068 Sum_probs=73.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----cc--------ce-ecccc-----ccCC-CC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LF--------GL-YHDWC-----ESFN-TY 129 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~--------~~-~~d~~-----e~f~-~y 129 (221)
...+|||+|||+|+.+..++..+.. +|+++|.+ .|++.|.+|- +. .. ..|.+ +.++ ++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 3678999999999877666665533 57999997 5999998872 10 01 12210 2221 35
Q ss_pred C-CccCeeeecccccccc--ccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 130 P-RTYDLLHADHLFSTIK--KSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 130 p-~sFDlVh~~~v~~h~~--~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+ ++||+|.|..++++.. .+...+|.|+.|+|||||+|++++.+
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 6 9999999998887642 15689999999999999999999876
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=109.90 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=90.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc----cc-eeccccccCCCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL----FG-LYHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl----~~-~~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
...+|||+|||+|.++..|++++.. +++++|.+ .+++.+.++.- +. ...|..+ + +++ ++||+|.|..++
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~v~~~~~~ 117 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRK-L-DFPSASFDVVLEKGTL 117 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTS-C-CSCSSCEEEEEEESHH
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhc-C-CCCCCcccEEEECcch
Confidence 3678999999999999999998643 57888886 58888887631 11 2334322 3 466 899999999888
Q ss_pred cccc--------------ccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHH--HhcCCeEEEeecCC--CeeEEEEE
Q 027609 143 STIK--------------KSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLV--KSLHWDVRMIYTND--NQGMLCVH 204 (221)
Q Consensus 143 ~h~~--------------~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~--~~l~W~~~~~~~~~--~e~~l~~~ 204 (221)
+|+. .++..+|.|+.|+|||||.+++.+....-- ...++ ....|......-.+ .--+.+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (215)
T 2pxx_A 118 DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHF-RTRHYAQAYYGWSLRHATYGSGFHFHLYLMH 196 (215)
T ss_dssp HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHH-HHHHHCCGGGCEEEEEEEESGGGCEEEEEEE
T ss_pred hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHH-HHHHHhccccCcEEEEEEecCcceEEEEEEE
Confidence 7653 277999999999999999999998754211 22333 33467754322111 23456666
Q ss_pred e
Q 027609 205 K 205 (221)
Q Consensus 205 K 205 (221)
|
T Consensus 197 ~ 197 (215)
T 2pxx_A 197 K 197 (215)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-13 Score=119.59 Aligned_cols=138 Identities=12% Similarity=0.143 Sum_probs=98.1
Q ss_pred CCCCC-CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cccc----eeccccccCCC-CCCccCe
Q 027609 66 INWSF-VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLFG----LYHDWCESFNT-YPRTYDL 135 (221)
Q Consensus 66 i~~~~-~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl~~----~~~d~~e~f~~-yp~sFDl 135 (221)
+.... ..+|||+|||+|.++..|+++.-. ..++.+|.+.+++.+.++ |+.. ..+|..+ .++ .|..||+
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~D~ 251 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQ-LTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLD-ARNFEGGAADV 251 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHCTT-CEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTC-GGGGTTCCEEE
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhCCC-CeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCccc-CcccCCCCccE
Confidence 44444 889999999999999999886211 245667776688776654 4422 2344322 111 4588999
Q ss_pred eeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcCh-------h--------------------hHHHHHHHHHhcCC
Q 027609 136 LHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA-------E--------------------TIVEVEDLVKSLHW 187 (221)
Q Consensus 136 Vh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~-------~--------------------~~~~i~~i~~~l~W 187 (221)
|.|..+++|+.+ +...+|.++.|+|||||.+++.|.. + ..+++++++.+-.+
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 331 (352)
T 3mcz_A 252 VMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGL 331 (352)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTC
T ss_pred EEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCC
Confidence 999999999984 3489999999999999999998620 1 13456777777788
Q ss_pred eEEEeecCCCeeEEEEEec
Q 027609 188 DVRMIYTNDNQGMLCVHKT 206 (221)
Q Consensus 188 ~~~~~~~~~~e~~l~~~K~ 206 (221)
+... ...+...+++++|+
T Consensus 332 ~~~~-~~~g~~~l~~a~kp 349 (352)
T 3mcz_A 332 AVGE-RSIGRYTLLIGQRS 349 (352)
T ss_dssp EEEE-EEETTEEEEEEECC
T ss_pred ceee-eccCceEEEEEecC
Confidence 7654 23356788999985
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.6e-13 Score=119.23 Aligned_cols=137 Identities=23% Similarity=0.276 Sum_probs=96.3
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cccc----eeccccccCCCCCCccCeeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLFG----LYHDWCESFNTYPRTYDLLHA 138 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl~~----~~~d~~e~f~~yp~sFDlVh~ 138 (221)
......+|||+|||+|.++..|+++.- ..+++.+|.+.+++.+.++ |+.+ ..+|. +.++|..||+|.|
T Consensus 179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~D~v~~ 254 (374)
T 1qzz_A 179 DWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVELAGPAERARRRFADAGLADRVTVAEGDF---FKPLPVTADVVLL 254 (374)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSCCEEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCC---CCcCCCCCCEEEE
Confidence 345678999999999999999988631 1245777775588777664 4321 22343 2345656999999
Q ss_pred ccccccccccH--HHHHHHhhhhccCCeEEEEEcC--h--h-----------------------hHHHHHHHHHhcCCeE
Q 027609 139 DHLFSTIKKSL--KAVVAEVDRILRPDGNLILRDD--A--E-----------------------TIVEVEDLVKSLHWDV 189 (221)
Q Consensus 139 ~~v~~h~~~d~--~~vL~EmdRVLRPGG~~ii~d~--~--~-----------------------~~~~i~~i~~~l~W~~ 189 (221)
..+++|+. ++ ..+|.++.|+|||||++++.|. . + ..+++++++..-.++.
T Consensus 255 ~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 333 (374)
T 1qzz_A 255 SFVLLNWS-DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLAL 333 (374)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEE
T ss_pred eccccCCC-HHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence 99999998 44 4899999999999999999876 2 1 2345667777778876
Q ss_pred EEe-ecCCCe-----eEEEEEeccc
Q 027609 190 RMI-YTNDNQ-----GMLCVHKTYW 208 (221)
Q Consensus 190 ~~~-~~~~~e-----~~l~~~K~~w 208 (221)
... ...... .++.|+|.=-
T Consensus 334 ~~~~~~~~~~~~~~~~~i~~~~~~~ 358 (374)
T 1qzz_A 334 ASERTSGSTTLPFDFSILEFTAVSE 358 (374)
T ss_dssp EEEEEECCSSCSSCEEEEEEEECC-
T ss_pred EEEEECCCCcccCCcEEEEEEECcc
Confidence 533 233334 7888988643
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-13 Score=112.24 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=73.3
Q ss_pred CCeEEeecCcchHH-HHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-cce-eccccccCCCCC-CccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGF-AAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FGL-YHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~f-aa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~~-~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
..+|||+|||+|.+ ...+...+. +++++|.+ .+++.+.++ |. +.. ..|. +.+ +++ ++||+|.|..+
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDI-RKL-PFKDESMSFVYSYGT 98 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCT-TSC-CSCTTCEEEEEECSC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECch-hhC-CCCCCceeEEEEcCh
Confidence 57899999999998 455556554 57888886 588877765 21 222 2343 223 365 89999999999
Q ss_pred ccccc-ccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 142 FSTIK-KSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 142 ~~h~~-~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++|+. +++..+|.|+.|+|||||.+++.+.
T Consensus 99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99984 2899999999999999999999864
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=119.92 Aligned_cols=94 Identities=10% Similarity=0.093 Sum_probs=72.6
Q ss_pred CCCCeEEeecCcchHHHHHHhh---CCCeEEEeccCCCC-CCHHHHHHc-----Cccc---e-eccccccCCCCC-----
Q 027609 69 SFVRNVMDMRAVYGGFAAALKD---LKVWVMNVVPIESP-DTLPIIYER-----GLFG---L-YHDWCESFNTYP----- 130 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~---~~v~vmnv~~~d~~-~~l~~a~eR-----Gl~~---~-~~d~~e~f~~yp----- 130 (221)
....+|||+|||+|.++..|++ .+. +++++|.+ .+++.+.++ |... . ..|. +.++.-+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~ 110 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFE---QIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS-DDFKFLGADSVD 110 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCS---EEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCT-TCCGGGCTTTTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCH-HhCCcccccccc
Confidence 4688999999999999999995 333 57889986 588888776 2211 2 2343 2232112
Q ss_pred -CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEE
Q 027609 131 -RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLIL 168 (221)
Q Consensus 131 -~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii 168 (221)
++||+|+|..+++|+ ++..+|.|+.|+|||||++++
T Consensus 111 ~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 111 KQKIDMITAVECAHWF--DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp SSCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCeeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEE
Confidence 699999999999988 799999999999999999998
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-14 Score=118.25 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=73.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-----cce-eccccccCCCCC-CccCeeee-cc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-----FGL-YHDWCESFNTYP-RTYDLLHA-DH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-----~~~-~~d~~e~f~~yp-~sFDlVh~-~~ 140 (221)
...+|||+|||+|.++..|++.+.. +++++|.+ .|++.+.++.- +.. ..|+.+...+++ ++||+|+| ..
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCC--eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4678999999999999999876532 67899987 59998888641 112 234333223576 99999999 33
Q ss_pred cccccc---c-cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 141 LFSTIK---K-SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 141 v~~h~~---~-d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.+ +.+ . ++..++.|+.|+|||||++++.+..
T Consensus 138 ~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred cc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 32 222 1 5668899999999999999988643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-13 Score=105.48 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=85.1
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-c--eeccccccCCCCCCccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-G--LYHDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~--~~~d~~e~f~~yp~sFDlVh~~~ 140 (221)
....+|||+|||+|.++..|+++. ...+++++|.+ .+++.+.++ |+. . +..|..+.++..+++||+|.|+.
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 102 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGG 102 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECC
Confidence 346799999999999999998872 12367899986 488888765 443 1 22343343432238999999998
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~~ 190 (221)
+++| ..++.++.|+|||||.+++.+.. +....+..+++....++.
T Consensus 103 ~~~~-----~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 103 GLTA-----PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS 148 (178)
T ss_dssp -TTC-----TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred cccH-----HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence 8876 57999999999999999998764 356667777777777654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.5e-14 Score=116.46 Aligned_cols=98 Identities=12% Similarity=0.025 Sum_probs=75.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcc-c---eeccccccCC---CCC--CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLF-G---LYHDWCESFN---TYP--RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~-~---~~~d~~e~f~---~yp--~sFDlVh~~ 139 (221)
...+|||+|||+|.++..|++++. +++++|.+ .+++.+.++.-. + ...|..+ ++ .|+ ..||+|.|+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLV-PEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTC-HHHHHHHHHHHCSCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccc-cccccccccccCccEEEEc
Confidence 467899999999999999998865 57888886 599988887421 1 1223221 11 122 349999999
Q ss_pred cccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 140 HLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 140 ~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.+++|+.. ++..+|.|+.|+|||||++++.+.
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 99998875 789999999999999999988864
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-13 Score=112.56 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=81.8
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-cce-eccccccCCCCC-CccCeeeecccccc
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FGL-YHDWCESFNTYP-RTYDLLHADHLFST 144 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~~-~~d~~e~f~~yp-~sFDlVh~~~v~~h 144 (221)
+|||+|||+|.++..|++++. +++++|.+ .+++.+.++ |+ +.. ..|. +.+ +++ ++||+|.|. +.|
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL-ADF-DIVADAWEGIVSI--FCH 104 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT-TTB-SCCTTTCSEEEEE--CCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh-hhc-CCCcCCccEEEEE--hhc
Confidence 999999999999999999864 57888986 588877776 32 112 2342 223 356 899999995 455
Q ss_pred cc-ccHHHHHHHhhhhccCCeEEEEEcCh-----------------hhHHHHHHHHHhcCCeEEE
Q 027609 145 IK-KSLKAVVAEVDRILRPDGNLILRDDA-----------------ETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 145 ~~-~d~~~vL~EmdRVLRPGG~~ii~d~~-----------------~~~~~i~~i~~~l~W~~~~ 191 (221)
+. .++..+|.++.|+|||||.+++.+.. ...+++.+++. .|++..
T Consensus 105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~ 167 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLI 167 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEE
Confidence 54 28899999999999999999999521 12567777777 787653
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=117.18 Aligned_cols=131 Identities=12% Similarity=0.144 Sum_probs=91.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC--ccceeccccccCC--CCC-CccCeeeeccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG--LFGLYHDWCESFN--TYP-RTYDLLHADHLFS 143 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG--l~~~~~d~~e~f~--~yp-~sFDlVh~~~v~~ 143 (221)
..++|||+|||+|+|+..|+++++. .|+++|.+ +||+.+.++- +...-..-...+. .+| .+||+|.|+.+|+
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~--~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~ 162 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAK--LVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI 162 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS
T ss_pred cccEEEecCCCccHHHHHHHhCCCC--EEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHh
Confidence 4789999999999999999998753 47899986 6998755431 1111000001111 246 5699999998887
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEEcCh----------------------hhHHHHHHHHHhcCCeEEEee-c------
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILRDDA----------------------ETIVEVEDLVKSLHWDVRMIY-T------ 194 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~d~~----------------------~~~~~i~~i~~~l~W~~~~~~-~------ 194 (221)
++ ..+|.|+.|+|||||.+++...+ ...+++...+....|.+.-.. +
T Consensus 163 sl----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~~ 238 (291)
T 3hp7_A 163 SL----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGH 238 (291)
T ss_dssp CG----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCGG
T ss_pred hH----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Confidence 54 58999999999999999987111 235778888899999976433 1
Q ss_pred CCCeeEEEEEec
Q 027609 195 NDNQGMLCVHKT 206 (221)
Q Consensus 195 ~~~e~~l~~~K~ 206 (221)
.+.|=++.++|.
T Consensus 239 gn~e~l~~~~~~ 250 (291)
T 3hp7_A 239 GNIEFLAHLEKT 250 (291)
T ss_dssp GCCCEEEEEEEC
T ss_pred cCHHHHHHhhhc
Confidence 235666667663
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-13 Score=119.38 Aligned_cols=96 Identities=10% Similarity=0.032 Sum_probs=76.0
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc----eeccccccCCCCC-CccCee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG----LYHDWCESFNTYP-RTYDLL 136 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~----~~~d~~e~f~~yp-~sFDlV 136 (221)
.....+|||+|||+|.++..|+++ +. +++++|.+ .+++.+.++ |+.. ...|. +.+ +++ ++||+|
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~-~~~~~~fD~V 189 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM-LDT-PFDKGAVTAS 189 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSC-CCCTTCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh-hcC-CCCCCCEeEE
Confidence 345789999999999999999987 54 46888886 588877664 4421 22343 223 366 999999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.|..+++|+ ++..+|.|+.|+|||||++++.+
T Consensus 190 ~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 190 WNNESTMYV--DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp EEESCGGGS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCchhhC--CHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999988 39999999999999999999986
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-12 Score=113.98 Aligned_cols=135 Identities=14% Similarity=0.203 Sum_probs=94.9
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cc---cc-eeccccccCCCCCCccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GL---FG-LYHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl---~~-~~~d~~e~f~~yp~sFDlVh 137 (221)
+.... .+|||+|||+|.++..|+++.-. ..++.+|.+.+++.+.++ |+ +. ..+|. +.++|.+||+|.
T Consensus 164 ~~~~~-~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~D~v~ 238 (334)
T 2ip2_A 164 LDFRG-RSFVDVGGGSGELTKAILQAEPS-ARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDM---LQEVPSNGDIYL 238 (334)
T ss_dssp SCCTT-CEEEEETCTTCHHHHHHHHHCTT-CEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCT---TTCCCSSCSEEE
T ss_pred CCCCC-CEEEEeCCCchHHHHHHHHHCCC-CEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCC---CCCCCCCCCEEE
Confidence 33444 89999999999999999876211 246777776788888765 22 11 23443 335678899999
Q ss_pred eccccccccc-cHHHHHHHhhhhccCCeEEEEEcCh------h-------------------hHHHHHHHHHhcCCeEEE
Q 027609 138 ADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA------E-------------------TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 138 ~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~------~-------------------~~~~i~~i~~~l~W~~~~ 191 (221)
|..+++||.+ +...+|.++.|+|||||++++.|.. + ..+++++++++-.++...
T Consensus 239 ~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 318 (334)
T 2ip2_A 239 LSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVER 318 (334)
T ss_dssp EESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred EchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeE
Confidence 9999999983 3349999999999999999998631 0 134556677777776543
Q ss_pred e-ecCCCeeEEEEEe
Q 027609 192 I-YTNDNQGMLCVHK 205 (221)
Q Consensus 192 ~-~~~~~e~~l~~~K 205 (221)
. .......++.|+|
T Consensus 319 ~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 319 IVDLPMETRMIVAAR 333 (334)
T ss_dssp EEEETTTEEEEEEEE
T ss_pred EEECCCCCEEEEEEe
Confidence 2 2334567777776
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=107.28 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=86.4
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCCCccCeeeec
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp~sFDlVh~~ 139 (221)
.....+|||+|||+|.++..|++++-. .+++++|.+ ++++.+.++ |+.. . ..|..+.++ ...+||+|.+.
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~~ 115 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-DLPDPDRVFIG 115 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-TSCCCSEEEES
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-cCCCCCEEEEC
Confidence 344789999999999999999887511 257888886 588877765 4322 2 234323221 22789999998
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeEE
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~~ 190 (221)
..+. ++..++.++.|+|||||.+++.+.. ...+.+.+.+++..|++.
T Consensus 116 ~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 163 (204)
T 3e05_A 116 GSGG----MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVE 163 (204)
T ss_dssp CCTT----CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEE
T ss_pred CCCc----CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCcee
Confidence 7664 6789999999999999999999654 457778888888888654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.2e-13 Score=117.22 Aligned_cols=137 Identities=20% Similarity=0.328 Sum_probs=96.2
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cccc----eeccccccCCCCCCccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLFG----LYHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl~~----~~~d~~e~f~~yp~sFDlVh 137 (221)
+......+|||+|||+|.++..|+++.-. ..++.+|.+.+++.+.++ |+.+ ..+|. +.++|..||+|.
T Consensus 179 ~~~~~~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~D~v~ 254 (360)
T 1tw3_A 179 YDWTNVRHVLDVGGGKGGFAAAIARRAPH-VSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF---FEPLPRKADAII 254 (360)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSSCEEEEE
T ss_pred CCCccCcEEEEeCCcCcHHHHHHHHhCCC-CEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCC---CCCCCCCccEEE
Confidence 34456789999999999999999886321 245667766688877664 3321 22343 234565699999
Q ss_pred eccccccccc-cHHHHHHHhhhhccCCeEEEEEcCh--h------------------------hHHHHHHHHHhcCCeEE
Q 027609 138 ADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA--E------------------------TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 138 ~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~--~------------------------~~~~i~~i~~~l~W~~~ 190 (221)
|..+++|+.+ +...+|.++.|+|||||++++.|.. + ..+++++++++-.++..
T Consensus 255 ~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 334 (360)
T 1tw3_A 255 LSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVE 334 (360)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEE
T ss_pred EcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEE
Confidence 9999999983 2258999999999999999998754 1 13456677777778765
Q ss_pred Eee-cCCC-----eeEEEEEec
Q 027609 191 MIY-TNDN-----QGMLCVHKT 206 (221)
Q Consensus 191 ~~~-~~~~-----e~~l~~~K~ 206 (221)
... .... ..++.|+|+
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 335 EVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEEECSSSSCEEEEEEEEEC
T ss_pred EEEeCCCCcccCccEEEEEEeC
Confidence 332 2223 678888874
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.7e-13 Score=106.84 Aligned_cols=134 Identities=15% Similarity=0.154 Sum_probs=91.0
Q ss_pred CCeEEeecCcchHHHHHHhhC--CCeEEEeccCCCC-CCHHHHHHc----Cc---ccee-ccccccCCCCC-CccCeeee
Q 027609 71 VRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESP-DTLPIIYER----GL---FGLY-HDWCESFNTYP-RTYDLLHA 138 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~--~v~vmnv~~~d~~-~~l~~a~eR----Gl---~~~~-~d~~e~f~~yp-~sFDlVh~ 138 (221)
..+|||+|||+|.++..|+++ +.. +++++|.+ ++++.+.++ |+ +..+ .|. +.++.+. ++||+|.|
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENG--RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH-QNMDKYIDCPVKAVMF 99 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTC--EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG-GGGGGTCCSCEEEEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH-HHHhhhccCCceEEEE
Confidence 568999999999999999886 221 57889986 588877665 33 2222 342 3344344 99999999
Q ss_pred cccccc-----c---cccHHHHHHHhhhhccCCeEEEEEcCh------hhHHHHHHHHHhcC---CeEEEee----cCCC
Q 027609 139 DHLFST-----I---KKSLKAVVAEVDRILRPDGNLILRDDA------ETIVEVEDLVKSLH---WDVRMIY----TNDN 197 (221)
Q Consensus 139 ~~v~~h-----~---~~d~~~vL~EmdRVLRPGG~~ii~d~~------~~~~~i~~i~~~l~---W~~~~~~----~~~~ 197 (221)
+..+.. . ..+...++.++.|+|||||++++.+.. ...+.+.+.+..+. |.+.... .+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~p 179 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCP 179 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCC
Confidence 865510 1 115678999999999999999998522 23566666666655 7765443 2335
Q ss_pred eeEEEEEecc
Q 027609 198 QGMLCVHKTY 207 (221)
Q Consensus 198 e~~l~~~K~~ 207 (221)
..+++.+|.+
T Consensus 180 p~~~~~~~~~ 189 (197)
T 3eey_A 180 PILVCIEKIS 189 (197)
T ss_dssp CEEEEEEECC
T ss_pred CeEEEEEEcc
Confidence 6777777753
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9e-13 Score=117.51 Aligned_cols=137 Identities=14% Similarity=0.217 Sum_probs=93.8
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cccc----eeccccccCCCCCCccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLFG----LYHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl~~----~~~d~~e~f~~yp~sFDlVh 137 (221)
+......+|||+|||+|.++..|+++.- ..+++.+|.+.+++.+.++ |+.+ ..+|..+ . +++ .+|+|.
T Consensus 186 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~-~~D~v~ 261 (359)
T 1x19_A 186 AKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYK-E-SYP-EADAVL 261 (359)
T ss_dssp CCCTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTT-S-CCC-CCSEEE
T ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCcccc-C-CCC-CCCEEE
Confidence 4455678999999999999999988621 1245777776688887765 5533 2234322 1 344 349999
Q ss_pred eccccccccc-cHHHHHHHhhhhccCCeEEEEEcCh----------------------------hhHHHHHHHHHhcCCe
Q 027609 138 ADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA----------------------------ETIVEVEDLVKSLHWD 188 (221)
Q Consensus 138 ~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~----------------------------~~~~~i~~i~~~l~W~ 188 (221)
+..+++|+.+ +...+|.++.|+|||||.+++.|.. ...+++++++++-.++
T Consensus 262 ~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~ 341 (359)
T 1x19_A 262 FCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYK 341 (359)
T ss_dssp EESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCE
T ss_pred EechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCc
Confidence 9999999983 4889999999999999999888611 1234556666666676
Q ss_pred EEEeecCCCeeEEEEEec
Q 027609 189 VRMIYTNDNQGMLCVHKT 206 (221)
Q Consensus 189 ~~~~~~~~~e~~l~~~K~ 206 (221)
......-....+++++|+
T Consensus 342 ~v~~~~~~~~~vi~a~kp 359 (359)
T 1x19_A 342 DVTMVRKYDHLLVQAVKP 359 (359)
T ss_dssp EEEEEEETTEEEEEEECC
T ss_pred eEEEEecCCceEEEEeCC
Confidence 543221115667777774
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=109.92 Aligned_cols=137 Identities=13% Similarity=0.084 Sum_probs=86.3
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-cc-eeccccccCCC---CCCccCeeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FG-LYHDWCESFNT---YPRTYDLLHA 138 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~-~~~d~~e~f~~---yp~sFDlVh~ 138 (221)
....+|||+|||+|.++..|+++.. ..+++++|.+ .+++.+.++ |+ +. ...|..+.++. ..++||+|.|
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS 107 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence 4578999999999999999988732 1367888885 578777665 21 11 22344332221 1289999999
Q ss_pred cccccc------ccc-------------------cHHHHHHHhhhhccCCeE-EEEEcChhhHHHHHHHHH--hcCCeEE
Q 027609 139 DHLFST------IKK-------------------SLKAVVAEVDRILRPDGN-LILRDDAETIVEVEDLVK--SLHWDVR 190 (221)
Q Consensus 139 ~~v~~h------~~~-------------------d~~~vL~EmdRVLRPGG~-~ii~d~~~~~~~i~~i~~--~l~W~~~ 190 (221)
+--+.+ +.. ....++.++.|+|||||+ +++.-.....+.+.+++. .-.|...
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRV 187 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEEC
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceE
Confidence 644432 111 017899999999999999 676655566778888888 6777543
Q ss_pred --EeecCCCeeEEEEEec
Q 027609 191 --MIYTNDNQGMLCVHKT 206 (221)
Q Consensus 191 --~~~~~~~e~~l~~~K~ 206 (221)
..+..+.+++++++|.
T Consensus 188 ~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 188 RKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp CEEECTTSCEEEEEEEEC
T ss_pred EEEEecCCCEEEEEEEEc
Confidence 3345567899999874
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=108.23 Aligned_cols=133 Identities=12% Similarity=0.043 Sum_probs=93.1
Q ss_pred CCCeEEeecCc-chHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-ccee-ccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAV-YGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FGLY-HDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG-~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~~~-~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+||| +|.++..|+++. ..+++++|.+ .+++.+.++ |+ +..+ .|+ +.+.+++ ++||+|.|+-
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNG-GIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS-CSSTTTCCSCEEEEEECC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc-hhhhhcccCceeEEEECC
Confidence 46899999999 999999998872 1256888886 588777655 33 2222 342 2355566 9999999986
Q ss_pred ccccccc------------------cHHHHHHHhhhhccCCeEEEEEcC--hhhHHHHHHHHHhcCCeEEEeecCC---C
Q 027609 141 LFSTIKK------------------SLKAVVAEVDRILRPDGNLILRDD--AETIVEVEDLVKSLHWDVRMIYTND---N 197 (221)
Q Consensus 141 v~~h~~~------------------d~~~vL~EmdRVLRPGG~~ii~d~--~~~~~~i~~i~~~l~W~~~~~~~~~---~ 197 (221)
.+.+... ....++.++.|+|||||++++... ....+.+.+.++...|++....-.. -
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~~~ 211 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGTRW 211 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC-C
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCCeE
Confidence 6654331 247899999999999999998543 3457888888999999876544222 3
Q ss_pred eeEEEEEe
Q 027609 198 QGMLCVHK 205 (221)
Q Consensus 198 e~~l~~~K 205 (221)
-.+|..+|
T Consensus 212 ~~~l~f~~ 219 (230)
T 3evz_A 212 RHSLIFFK 219 (230)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 45555555
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-13 Score=122.55 Aligned_cols=101 Identities=10% Similarity=0.230 Sum_probs=75.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cccc----eeccccccCCCCCCccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLFG----LYHDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl~~----~~~d~~e~f~~yp~sFDlVh~~~ 140 (221)
...++|||+|||+|.++..|+++.-. ..++.+|.+.+++.+.++ |+.+ ..+|..+.-.++|++||+|++..
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~ 256 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKE-VEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ 256 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTT-CEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence 45789999999999999999885211 146777776788887765 3322 23443221014678999999999
Q ss_pred ccccccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 141 LFSTIKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 141 v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+++||.+ +...+|.++.|+|||||.+++.|
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999984 44688999999999999999976
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-13 Score=116.14 Aligned_cols=100 Identities=16% Similarity=0.175 Sum_probs=76.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc---cce-eccccccCCCC-C-CccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL---FGL-YHDWCESFNTY-P-RTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl---~~~-~~d~~e~f~~y-p-~sFDlVh~ 138 (221)
...+|||+|||+|.++..|++.+.. +++++|.+ .+++.+.++ |+ +.. ..|.. .+ ++ + ++||+|.|
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~-~~~~~~~fD~v~~ 139 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY-GR-HMDLGKEFDVISS 139 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT-TS-CCCCSSCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcc-cc-ccCCCCCcCEEEE
Confidence 4679999999999999999887632 57888886 588887776 22 122 23432 22 34 4 89999999
Q ss_pred ccccccc--c-ccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 139 DHLFSTI--K-KSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 139 ~~v~~h~--~-~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
..+++|. + .++..+|.|+.|+|||||++++.+...
T Consensus 140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 9999762 1 288999999999999999999998663
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.8e-13 Score=113.59 Aligned_cols=131 Identities=11% Similarity=0.150 Sum_probs=96.4
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCC-CCccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTY-PRTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~y-p~sFDlVh~~ 139 (221)
...+|||+|||+|.++..|++. +.. +++++|.+ .+++.+.++ |+.. . ..|+.+ ++ +++||+|.|+
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~---~~~~~~fD~Iv~n 183 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDC--EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS---ALAGQQFAMIVSN 183 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTS--EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG---GGTTCCEEEEEEC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh---hcccCCccEEEEC
Confidence 4568999999999999999864 322 57889986 588877765 4422 2 234433 34 4899999997
Q ss_pred c-------------cccccc-----------ccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE--Eee
Q 027609 140 H-------------LFSTIK-----------KSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR--MIY 193 (221)
Q Consensus 140 ~-------------v~~h~~-----------~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~--~~~ 193 (221)
- ++.|.+ .+...++.++.|+|||||++++.......+.+.++++...|+.. ..|
T Consensus 184 pPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d 263 (276)
T 2b3t_A 184 PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRD 263 (276)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEEC
T ss_pred CCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEec
Confidence 3 333322 25678999999999999999999877778888888888888643 345
Q ss_pred cCCCeeEEEEEe
Q 027609 194 TNDNQGMLCVHK 205 (221)
Q Consensus 194 ~~~~e~~l~~~K 205 (221)
-.+.+++++++|
T Consensus 264 ~~g~~r~~~~~~ 275 (276)
T 2b3t_A 264 YGDNERVTLGRY 275 (276)
T ss_dssp TTSSEEEEEEEC
T ss_pred CCCCCcEEEEEE
Confidence 567899999875
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=116.60 Aligned_cols=135 Identities=19% Similarity=0.251 Sum_probs=97.9
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cccc----eeccccccCCCCCCccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLFG----LYHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl~~----~~~d~~e~f~~yp~sFDlVh 137 (221)
+......+|||+|||+|.++..|+++.-. ..++.+|.+.+++.+.++ |+.+ ..+|. +.++|.+||+|.
T Consensus 198 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~---~~~~p~~~D~v~ 273 (369)
T 3gwz_A 198 YDFSGAATAVDIGGGRGSLMAAVLDAFPG-LRGTLLERPPVAEEARELLTGRGLADRCEILPGDF---FETIPDGADVYL 273 (369)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT---TTCCCSSCSEEE
T ss_pred CCCccCcEEEEeCCCccHHHHHHHHHCCC-CeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCC---CCCCCCCceEEE
Confidence 44556899999999999999999886211 145777776677776654 4322 23443 345667899999
Q ss_pred eccccccccccHH--HHHHHhhhhccCCeEEEEEcCh------------------------hhHHHHHHHHHhcCCeEEE
Q 027609 138 ADHLFSTIKKSLK--AVVAEVDRILRPDGNLILRDDA------------------------ETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 138 ~~~v~~h~~~d~~--~vL~EmdRVLRPGG~~ii~d~~------------------------~~~~~i~~i~~~l~W~~~~ 191 (221)
|..+++++. ++. .+|.++.|+|||||++++.|.. ...+++++++++-.++...
T Consensus 274 ~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 352 (369)
T 3gwz_A 274 IKHVLHDWD-DDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVER 352 (369)
T ss_dssp EESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEE
T ss_pred hhhhhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEE
Confidence 999999998 554 7999999999999999997521 0145677888888888754
Q ss_pred ee--cCCCeeEEEEEe
Q 027609 192 IY--TNDNQGMLCVHK 205 (221)
Q Consensus 192 ~~--~~~~e~~l~~~K 205 (221)
.. ......++.|+|
T Consensus 353 ~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 353 SLPCGAGPVRIVEIRR 368 (369)
T ss_dssp EEECSSSSEEEEEEEE
T ss_pred EEECCCCCcEEEEEEe
Confidence 33 345677887776
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.3e-13 Score=111.67 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=71.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCCC-------CHHHHHHc----Cc---ccee-cc-ccccCCCCC
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPD-------TLPIIYER----GL---FGLY-HD-WCESFNTYP 130 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~-------~l~~a~eR----Gl---~~~~-~d-~~e~f~~yp 130 (221)
.....+|||+|||+|.++..|+++ +.. .+++++|.+. +++.+.++ |+ +... .| ....-.+|+
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~-~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 119 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSS-GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA 119 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTT-CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC
Confidence 345789999999999999999887 321 1467777753 78877665 22 1122 22 211122456
Q ss_pred -CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 131 -RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 131 -~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++||+|+|..+++|+. ++..++..+.++++|||++++.+
T Consensus 120 ~~~fD~v~~~~~l~~~~-~~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 120 DQHFDRVVLAHSLWYFA-SANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp TCCCSEEEEESCGGGSS-CHHHHHHHHHHHTTTCSEEEEEE
T ss_pred CCCEEEEEEccchhhCC-CHHHHHHHHHHHhCCCCEEEEEE
Confidence 8999999999999998 78876666677777799999975
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.5e-13 Score=106.65 Aligned_cols=128 Identities=15% Similarity=0.143 Sum_probs=89.7
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc--cce-eccccccCCC--CC-CccCeeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL--FGL-YHDWCESFNT--YP-RTYDLLHA 138 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl--~~~-~~d~~e~f~~--yp-~sFDlVh~ 138 (221)
+.-....+|||+|||. +.+|.+ .|++.+.++.- +.. ..|. +.++. |+ ++||+|.|
T Consensus 8 ~g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~-~~~~~~~~~~~~fD~V~~ 69 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENI-KQLLQSAHKESSFDIILS 69 (176)
T ss_dssp TTCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEG-GGGGGGCCCSSCEEEEEE
T ss_pred cCCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEech-hcCccccCCCCCEeEEEE
Confidence 3344578999999996 126654 58998888731 222 2342 33433 46 99999999
Q ss_pred ccccccc-cccHHHHHHHhhhhccCCeEEEEEcChh----------hHHHHHHHHHhcCCeEEEeecC------------
Q 027609 139 DHLFSTI-KKSLKAVVAEVDRILRPDGNLILRDDAE----------TIVEVEDLVKSLHWDVRMIYTN------------ 195 (221)
Q Consensus 139 ~~v~~h~-~~d~~~vL~EmdRVLRPGG~~ii~d~~~----------~~~~i~~i~~~l~W~~~~~~~~------------ 195 (221)
+.+++|+ . ++..+|.|+.|+|||||++++.+... ..+++.+.++.-.+ +.+....
T Consensus 70 ~~~l~~~~~-~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~~~~~~ 147 (176)
T 2ld4_A 70 GLVPGSTTL-HSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPEEVQSV 147 (176)
T ss_dssp CCSTTCCCC-CCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHHHHHHH
T ss_pred CChhhhccc-CHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHHHHHHH
Confidence 9999998 6 89999999999999999999975421 15677777777777 4432200
Q ss_pred ------C-C---eeEEEEEecccCCCcc
Q 027609 196 ------D-N---QGMLCVHKTYWRPKET 213 (221)
Q Consensus 196 ------~-~---e~~l~~~K~~w~~~~~ 213 (221)
. . -.+++++|+-|..+++
T Consensus 148 ~~~~g~~~~~~~~~~~~a~Kp~~~~gs~ 175 (176)
T 2ld4_A 148 REHLGHESDNLLFVQITGKKPNFEVGSS 175 (176)
T ss_dssp HHHTCCCCSSEEEEEEEEECCCSSCCSC
T ss_pred HHHhcccCCceEEEEEeccCCcccccCC
Confidence 0 1 4578999998877664
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=108.33 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=65.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-C----HHHHHHcCcc-ceecccccc--CCCCCCccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-T----LPIIYERGLF-GLYHDWCES--FNTYPRTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~----l~~a~eRGl~-~~~~d~~e~--f~~yp~sFDlVh~~~v 141 (221)
...+|||+|||+|.++..|+++.-. ..|+++|.+. | ++.+.++.-+ -...|..+. +.+++++||+|.|+ +
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~-~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~-~ 134 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD-I 134 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-C
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-c
Confidence 4678999999999999998876211 2578899863 4 4455544222 123343221 12355899999998 2
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
..+ .+...+|.|+.|+|||||.+++.
T Consensus 135 ~~~--~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 135 AQK--NQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp CST--THHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCh--hHHHHHHHHHHHHhCCCCEEEEE
Confidence 222 24556799999999999999998
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=116.08 Aligned_cols=134 Identities=13% Similarity=0.204 Sum_probs=88.9
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHH--HHHcCccc----eeccccccCCCCCCccCeeeec
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPI--IYERGLFG----LYHDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~--a~eRGl~~----~~~d~~e~f~~yp~sFDlVh~~ 139 (221)
+......+|||+|||+|.++..|+++.-. ..++.+|.+.++.. +.+.|+.+ ..+|. +.++| +||+|.+.
T Consensus 180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~---~~~~p-~~D~v~~~ 254 (348)
T 3lst_A 180 GDFPATGTVADVGGGRGGFLLTVLREHPG-LQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDF---LREVP-HADVHVLK 254 (348)
T ss_dssp SCCCSSEEEEEETCTTSHHHHHHHHHCTT-EEEEEEECHHHHTTCCCCCGGGTTSEEEEECCT---TTCCC-CCSEEEEE
T ss_pred CCccCCceEEEECCccCHHHHHHHHHCCC-CEEEEecCHHHhhcccccccCCCCCeEEEecCC---CCCCC-CCcEEEEe
Confidence 44566889999999999999999885311 24566666543330 01113322 23342 34567 99999999
Q ss_pred cccccccccH--HHHHHHhhhhccCCeEEEEEcCh-------------------------hhHHHHHHHHHhcCCeEEEe
Q 027609 140 HLFSTIKKSL--KAVVAEVDRILRPDGNLILRDDA-------------------------ETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 140 ~v~~h~~~d~--~~vL~EmdRVLRPGG~~ii~d~~-------------------------~~~~~i~~i~~~l~W~~~~~ 192 (221)
.+++|+. ++ ..+|.|+.|+|||||.+++.|.. ...+++++++++-.++..-.
T Consensus 255 ~vlh~~~-d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 333 (348)
T 3lst_A 255 RILHNWG-DEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRV 333 (348)
T ss_dssp SCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred hhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 9999999 56 79999999999999999998631 01456677777777776433
Q ss_pred e-cCCCeeEEEEEe
Q 027609 193 Y-TNDNQGMLCVHK 205 (221)
Q Consensus 193 ~-~~~~e~~l~~~K 205 (221)
. ......++.+++
T Consensus 334 ~~~~~~~~vie~~p 347 (348)
T 3lst_A 334 VGTSSVMSIAVGVP 347 (348)
T ss_dssp EECSSSCEEEEEEE
T ss_pred EECCCCcEEEEEEe
Confidence 2 223344555543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=109.97 Aligned_cols=99 Identities=20% Similarity=0.276 Sum_probs=73.5
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-cc-eeccccccCCCCCCccCeeeecc-
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FG-LYHDWCESFNTYPRTYDLLHADH- 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~-~~~d~~e~f~~yp~sFDlVh~~~- 140 (221)
....+|||+|||+|.++..|++++. +++++|.+ .+++.+.++ |+ +. ...|..+ + +++++||+|.|..
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~v~~~~~ 114 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-I-AFKNEFDAVTMFFS 114 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-C-CCCSCEEEEEECSS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-c-ccCCCccEEEEcCC
Confidence 4467999999999999999999875 57889986 588887765 22 12 2234322 3 3468999999863
Q ss_pred ccccccc-cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 141 LFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 141 v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.++|+.. ++..+|.++.|+|||||.+++....
T Consensus 115 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 115 TIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp GGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred chhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 4444432 7889999999999999999987543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-13 Score=118.60 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=74.7
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCc-------------------------------
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGL------------------------------- 115 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl------------------------------- 115 (221)
....+|||+|||+|.++..|+.+ +.. +++++|.+ .+++.|.++--
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~--~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPS--RMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK 122 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCS--EEEEEESCHHHHHHHHHTC--------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 36789999999999999999887 322 57899986 58888877621
Q ss_pred ---------------------------------cc-eecccccc---CCCCC-CccCeeeecccccccc----c-cHHHH
Q 027609 116 ---------------------------------FG-LYHDWCES---FNTYP-RTYDLLHADHLFSTIK----K-SLKAV 152 (221)
Q Consensus 116 ---------------------------------~~-~~~d~~e~---f~~yp-~sFDlVh~~~v~~h~~----~-d~~~v 152 (221)
+. ..+|+... +.+++ ++||+|.|..+++|++ . ++..+
T Consensus 123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~ 202 (292)
T 3g07_A 123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM 202 (292)
T ss_dssp -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence 11 11232210 11244 9999999999997653 2 78899
Q ss_pred HHHhhhhccCCeEEEEEcC
Q 027609 153 VAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 153 L~EmdRVLRPGG~~ii~d~ 171 (221)
|.++.|+|||||+|++...
T Consensus 203 l~~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 203 FRRIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHHHEEEEEEEEEECC
T ss_pred HHHHHHHhCCCcEEEEecC
Confidence 9999999999999999743
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=100.59 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=83.1
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCccceeccccccCCC-------CC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT-------YP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~-------yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|+++ +.- .+++++|.+.+++. .+ +.-...|..+ ++. ++ ++||+|.|+.
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~--~~-~~~~~~d~~~-~~~~~~~~~~~~~~~~D~i~~~~ 96 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLPMDPI--VG-VDFLQGDFRD-ELVMKALLERVGDSKVQVVMSDM 96 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSCCCCC--TT-EEEEESCTTS-HHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcccccc--Cc-EEEEEccccc-chhhhhhhccCCCCceeEEEECC
Confidence 3569999999999999999876 321 14566666544432 11 2112234322 110 55 8999999988
Q ss_pred ccccccccH-----------HHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEEEee------cCCCeeEEE
Q 027609 141 LFSTIKKSL-----------KAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIY------TNDNQGMLC 202 (221)
Q Consensus 141 v~~h~~~d~-----------~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~~~~------~~~~e~~l~ 202 (221)
.+++.. ++ ..+|.++.|+|||||.+++.+... ....+...+.. .|+..... ....|.+++
T Consensus 97 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 174 (180)
T 1ej0_A 97 APNMSG-TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVYIV 174 (180)
T ss_dssp CCCCCS-CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCEEEEE
T ss_pred CccccC-CCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCceEEEE
Confidence 877554 33 689999999999999999975432 34444444444 36553321 234688888
Q ss_pred EEe
Q 027609 203 VHK 205 (221)
Q Consensus 203 ~~K 205 (221)
|++
T Consensus 175 ~~~ 177 (180)
T 1ej0_A 175 ATG 177 (180)
T ss_dssp EEE
T ss_pred Ecc
Confidence 876
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-12 Score=106.44 Aligned_cols=134 Identities=17% Similarity=0.247 Sum_probs=90.9
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCC---CCCccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNT---YPRTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~---yp~sFDlVh~ 138 (221)
...+|||+|||+|.++..|+.. +. .+|+++|.+ ++++.+.++ |+.+ +++.-.+.++. .+++||+|.|
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPH--LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 4679999999999998888742 22 247888886 488777654 5422 33321233332 2489999999
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEEcCh---hhHHHHHHHHHhcCCeEEEee---c---CCCeeEEEEEecccC
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA---ETIVEVEDLVKSLHWDVRMIY---T---NDNQGMLCVHKTYWR 209 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~---~~~~~i~~i~~~l~W~~~~~~---~---~~~e~~l~~~K~~w~ 209 (221)
..+ . ++..++.++.|+|||||++++.+.. +.+..+.+.++...++..... . +....+++++|.-..
T Consensus 148 ~~~----~-~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~~~~ 222 (240)
T 1xdz_A 148 RAV----A-RLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIKNT 222 (240)
T ss_dssp ECC----S-CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECSCC
T ss_pred ecc----C-CHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEecCCC
Confidence 762 3 7889999999999999999998643 335556666777788764221 1 234567777776544
Q ss_pred C
Q 027609 210 P 210 (221)
Q Consensus 210 ~ 210 (221)
|
T Consensus 223 ~ 223 (240)
T 1xdz_A 223 P 223 (240)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=111.76 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=92.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-ccee-ccccccCCCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FGLY-HDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~~~-~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
...+|||+|||+|.++..+++.+. +++++|.+ .+++.+.++ |+ +..+ .|+.+ .++ ++||+|.|+.+
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~---~~~~~~fD~Vv~n~~ 193 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA---ALPFGPFDLLVANLY 193 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH---HGGGCCEEEEEEECC
T ss_pred CCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh---cCcCCCCCEEEECCc
Confidence 367999999999999999999875 67888885 588877775 33 2222 23322 245 89999999855
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
.+ ....++.++.|+|||||++++++.. ...+.+.+.+++..++.......+.=..|+++|
T Consensus 194 ~~----~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~l~~~k 254 (254)
T 2nxc_A 194 AE----LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR 254 (254)
T ss_dssp HH----HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEC
T ss_pred HH----HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEeccCCeEEEEEEC
Confidence 44 3468999999999999999998643 457888888888889876544444445555554
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.3e-13 Score=116.05 Aligned_cols=101 Identities=13% Similarity=0.100 Sum_probs=76.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC-----------c--cc-eeccccccCC---CCC-
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG-----------L--FG-LYHDWCESFN---TYP- 130 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG-----------l--~~-~~~d~~e~f~---~yp- 130 (221)
...+|||+|||+|.++..|++.+.. +++++|.+ .+++.+.++. . +. ...|. +.++ +|+
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~ 110 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRIN--KLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS-SKELLIDKFRD 110 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT-TTSCSTTTCSS
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecc-cccchhhhccc
Confidence 4679999999999999999886532 57889986 5888887762 1 11 23343 3333 252
Q ss_pred --CccCeeeeccccccc-cc--cHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 131 --RTYDLLHADHLFSTI-KK--SLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 131 --~sFDlVh~~~v~~h~-~~--d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
++||+|.|+.++++. .+ ++..+|.++.|+|||||+++++....
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 111 PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 599999999999876 32 67899999999999999999998764
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-12 Score=103.04 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=91.8
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeeccccccccc-
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKK- 147 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~- 147 (221)
..+|||+|||+|.++..|++++ +++++|.+ .+++. ...+.-...|.. .+++ ++||+|.|+..+++..+
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~~~~~~~d~~---~~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRGGNLVRADLL---CSINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSSSCEEECSTT---TTBCGGGCSEEEECCCCBTTCCC
T ss_pred CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccCCeEEECChh---hhcccCCCCEEEECCCCccCCcc
Confidence 5589999999999999999987 67999986 47765 222221334432 3456 99999999988875441
Q ss_pred -------cHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeEEEee--cCCCeeEEEEEe
Q 027609 148 -------SLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVRMIY--TNDNQGMLCVHK 205 (221)
Q Consensus 148 -------d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~~~~~--~~~~e~~l~~~K 205 (221)
+...++.++.|.| |||.+++.+.. ...+++.++++...|+..... ....|++++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~~ 161 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGETVYIIKG 161 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEEE
T ss_pred ccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEEE
Confidence 2467899999999 99999998644 457889999999999876443 344566666543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-13 Score=116.23 Aligned_cols=96 Identities=19% Similarity=0.279 Sum_probs=72.7
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc---------cce-eccccccCCCCCCccCeeeec-
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL---------FGL-YHDWCESFNTYPRTYDLLHAD- 139 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl---------~~~-~~d~~e~f~~yp~sFDlVh~~- 139 (221)
.+|||+|||+|.++..|++++. +++++|.+ .+++.+.++.- +.. ..|.. .++ ++++||+|.|.
T Consensus 84 ~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~v~~~~ 158 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS-AFA-LDKRFGTVVISS 158 (299)
T ss_dssp SCEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT-BCC-CSCCEEEEEECH
T ss_pred CcEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh-cCC-cCCCcCEEEECC
Confidence 3899999999999999999874 46888886 58888877621 122 33432 233 47999999976
Q ss_pred cccccccc-cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 140 HLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 140 ~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.+++|+.. +...+|.|+.|+|||||.+++.+..
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 159 GSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 55555543 5689999999999999999998644
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.5e-12 Score=98.29 Aligned_cols=110 Identities=10% Similarity=0.125 Sum_probs=84.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|++.+. +++++|.+ ++++.+.++ |+.. . ..|+.+ +++ ++||+|.|+.
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~i~~~~ 108 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VLDKLEFNKAFIGG 108 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HGGGCCCSEEEECS
T ss_pred CCCEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cccCCCCcEEEECC
Confidence 467999999999999999988433 56888876 588777765 4322 2 234333 355 7999999998
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcC-hhhHHHHHHHHHhcCCeEEEe
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-~~~~~~i~~i~~~l~W~~~~~ 192 (221)
+ . ++..++.++.|+ |||.+++.+. .+...++.+.++...|++...
T Consensus 109 ~----~-~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 109 T----K-NIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp C----S-CHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred c----c-cHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 7 3 788999999999 9999999984 445777888888888988654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-12 Score=112.15 Aligned_cols=135 Identities=17% Similarity=0.223 Sum_probs=94.7
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cccc----eeccccccCCCCCCccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLFG----LYHDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl~~----~~~d~~e~f~~yp~sFDlVh~~~ 140 (221)
....+|||+|||+|.++..|+++.- ..+++.+|.+.+++.+.++ |+.+ ..+|..+ .++|..||+|.|..
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~D~v~~~~ 240 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFE--VDYGNDYDLVLLPN 240 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTT--SCCCSCEEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccccc--CCCCCCCcEEEEcc
Confidence 5678999999999999999988621 1256777777777777665 4422 2234322 14666699999999
Q ss_pred ccccccc-cHHHHHHHhhhhccCCeEEEEEcChh---------------------------hHHHHHHHHHhcCCeEEEe
Q 027609 141 LFSTIKK-SLKAVVAEVDRILRPDGNLILRDDAE---------------------------TIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 141 v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~~---------------------------~~~~i~~i~~~l~W~~~~~ 192 (221)
+++|+.+ +...+|.++.|+|||||++++.|... ..+++++++++-.++....
T Consensus 241 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~ 320 (335)
T 2r3s_A 241 FLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQL 320 (335)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred hhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeE
Confidence 9999963 56899999999999999999985321 0456677777777875433
Q ss_pred -ecCCCeeEEEEEec
Q 027609 193 -YTNDNQGMLCVHKT 206 (221)
Q Consensus 193 -~~~~~e~~l~~~K~ 206 (221)
+......+++++++
T Consensus 321 ~~~~~~~~~i~~~~~ 335 (335)
T 2r3s_A 321 HSLPTTQQQVIVAYK 335 (335)
T ss_dssp ECCTTSSSEEEEEEC
T ss_pred EECCCCceeEEEecC
Confidence 23334567777653
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=104.96 Aligned_cols=130 Identities=9% Similarity=0.162 Sum_probs=79.3
Q ss_pred CCeEEeecCcchHHHHHHhhCCCe-EEEeccCCCCCCHHHHHHcCccceeccccccCC----------------------
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVW-VMNVVPIESPDTLPIIYERGLFGLYHDWCESFN---------------------- 127 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~-vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~---------------------- 127 (221)
..+|||+|||+|+++..|+++... ...++++|.+.+.. ..++.-...|..+ +.
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~---~~~v~~~~~d~~~-~~~~~~~~~~~i~~~~~~~~~~~~ 98 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP---IPNVYFIQGEIGK-DNMNNIKNINYIDNMNNNSVDYKL 98 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC---CTTCEEEECCTTT-TSSCCC-----------CHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC---CCCceEEEccccc-hhhhhhccccccccccchhhHHHH
Confidence 578999999999999999876210 12567777765421 0112112234322 21
Q ss_pred --CCC-CccCeeeecccccccc---ccH-------HHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeE-EEe
Q 027609 128 --TYP-RTYDLLHADHLFSTIK---KSL-------KAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDV-RMI 192 (221)
Q Consensus 128 --~yp-~sFDlVh~~~v~~h~~---~d~-------~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~-~~~ 192 (221)
.++ ++||+|.|+..+++.. .+. ..+|.++.|+|||||.+++.... +....+...++.. +.. ...
T Consensus 99 ~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~~v~~~ 177 (201)
T 2plw_A 99 KEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQLVHTT 177 (201)
T ss_dssp HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT-EEEEEEC
T ss_pred HhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH-HheEEEE
Confidence 045 7999999987665421 022 24899999999999999996432 2234455555443 432 222
Q ss_pred e-----cCCCeeEEEEEe
Q 027609 193 Y-----TNDNQGMLCVHK 205 (221)
Q Consensus 193 ~-----~~~~e~~l~~~K 205 (221)
. ..+.|.+++|++
T Consensus 178 ~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 178 KPKASRNESREIYLVCKN 195 (201)
T ss_dssp CCC-----CCEEEEEEEE
T ss_pred CCcccCCcCceEEEEEec
Confidence 1 235799999987
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=101.99 Aligned_cols=114 Identities=20% Similarity=0.217 Sum_probs=84.0
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-cc--e-eccccccCCCCCCccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FG--L-YHDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~--~-~~d~~e~f~~yp~sFDlVh~~ 139 (221)
....+|||+|||+|.++..|++.. .+++++|.+ .+++.+.++ |+ .. . ..|+.+.++ ..++||+|.|+
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~ 107 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC-KIPDIDIAVVG 107 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT-TSCCEEEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcc-cCCCCCEEEEC
Confidence 346799999999999999999886 267888886 477777663 33 11 2 234322122 11689999998
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeEE
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~~ 190 (221)
.+++ +...++.++.|+|+|||.+++.+.. ....++.+.++...|++.
T Consensus 108 ~~~~----~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 108 GSGG----ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp CCTT----CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred CchH----HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceE
Confidence 7765 4578999999999999999998764 456778888888777654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=105.79 Aligned_cols=119 Identities=13% Similarity=0.188 Sum_probs=88.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc---cee-ccccccCCCCC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF---GLY-HDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~---~~~-~d~~e~f~~yp-~sFDlVh~~ 139 (221)
...+|||+|||+|.++..|+.++.. +++++|.+ .+++.+.++ |+. .++ .|..+....++ ++||+|.|+
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n 126 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN 126 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence 4679999999999999999998643 68899986 577777665 442 222 34433222355 999999997
Q ss_pred cccccc-----c--------------ccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE
Q 027609 140 HLFSTI-----K--------------KSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 140 ~v~~h~-----~--------------~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
-.+.+. . .+...++.++.|+|||||.+++.-......++...++...|...
T Consensus 127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPK 196 (259)
T ss_dssp CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEE
T ss_pred CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceE
Confidence 544322 0 14578999999999999999998777778888888888888865
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-12 Score=105.29 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=87.2
Q ss_pred CCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCCCCccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~yp~sFDlVh~~~v 141 (221)
..+|||+|||+|.++..|+.. +.. +++++|.+ .+++.+.++ |+.+ .+ .|+.+ ++ -+++||+|.|..+
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D~i~~~~~ 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEA--HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE-FP-SEPPFDGVISRAF 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTS--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT-SC-CCSCEEEEECSCS
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhh-CC-ccCCcCEEEEecc
Confidence 568999999999999999875 222 56888876 477777654 4432 22 23322 22 1289999998642
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEE------eecCCCeeEEEEEec
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM------IYTNDNQGMLCVHKT 206 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~------~~~~~~e~~l~~~K~ 206 (221)
. ++..++.++.|+|||||++++.......++++.+.+ .|+... ++..+...+++++|.
T Consensus 142 ----~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 ----A-SLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp ----S-SHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred ----C-CHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 3 678999999999999999999976666677777665 777543 122345777777774
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.4e-13 Score=106.93 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=75.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc--ccee-ccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL--FGLY-HDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl--~~~~-~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..+++++.. .++++|.+ ++++.+.++ |+ +..+ .|..+....++ ++||+|.|+.
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAA--SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 4678999999999999988887643 47888886 588877665 43 1222 34322112254 8999999998
Q ss_pred ccccccccHHHHHHHhhh--hccCCeEEEEEcCh
Q 027609 141 LFSTIKKSLKAVVAEVDR--ILRPDGNLILRDDA 172 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdR--VLRPGG~~ii~d~~ 172 (221)
.+++..++...++.++.| +|||||.+++....
T Consensus 122 p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 122 PYNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 888753478999999999 99999999998643
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=6e-12 Score=107.68 Aligned_cols=129 Identities=14% Similarity=0.176 Sum_probs=85.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcc-ce-----ecccc-ccCCCCCCccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLF-GL-----YHDWC-ESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~-~~-----~~d~~-e~f~~yp~sFDlVh~~~v 141 (221)
...+|||+|||+|.|+..|++++.. +|+++|.+ +|++.+.++.-- .. +...+ +.+.. ..||.+.+..+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v 112 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVS 112 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCS
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEE
Confidence 4678999999999999999998753 57999986 699987765210 00 11111 12221 12444444444
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcC-------------------h---hhHHHHHHHHHhcCCeEEEee------
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDD-------------------A---ETIVEVEDLVKSLHWDVRMIY------ 193 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-------------------~---~~~~~i~~i~~~l~W~~~~~~------ 193 (221)
|.++ ..+|.|+.|+|||||.+++... . ...+++.+.+....|++...+
T Consensus 113 ~~~l----~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g 188 (232)
T 3opn_A 113 FISL----DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKG 188 (232)
T ss_dssp SSCG----GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCB
T ss_pred hhhH----HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCC
Confidence 4433 5799999999999999998721 1 124677888889999876443
Q ss_pred -cCCCeeEEEEEec
Q 027609 194 -TNDNQGMLCVHKT 206 (221)
Q Consensus 194 -~~~~e~~l~~~K~ 206 (221)
..+-|-++.++|.
T Consensus 189 ~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 189 GAGNVEFLVHLLKD 202 (232)
T ss_dssp TTTBCCEEEEEEES
T ss_pred CCCCHHHHHHHhhc
Confidence 1235777777773
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.8e-13 Score=119.66 Aligned_cols=97 Identities=12% Similarity=0.187 Sum_probs=71.4
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccc-eeccccccCCCCCCccCeeeecccccccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADHLFSTIK 146 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~-~~~d~~e~f~~yp~sFDlVh~~~v~~h~~ 146 (221)
.....+|||+|||+|.++..|+++.-. ..++.+|.+.+++.+.+..-+. ..+|. +.++|. ||+|.|..+++|+.
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~---~~~~~~-~D~v~~~~~lh~~~ 281 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPL-IKGINFDLPQVIENAPPLSGIEHVGGDM---FASVPQ-GDAMILKAVCHNWS 281 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCCTTEEEEECCT---TTCCCC-EEEEEEESSGGGSC
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCC-CeEEEeChHHHHHhhhhcCCCEEEeCCc---ccCCCC-CCEEEEecccccCC
Confidence 345789999999999999999887321 1356666655665554321122 23443 234566 99999999999998
Q ss_pred ccHH--HHHHHhhhhccCCeEEEEEc
Q 027609 147 KSLK--AVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 147 ~d~~--~vL~EmdRVLRPGG~~ii~d 170 (221)
++. .+|.++.|+|||||.+++.|
T Consensus 282 -d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 282 -DEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp -HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 666 99999999999999999985
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-12 Score=108.63 Aligned_cols=110 Identities=12% Similarity=0.161 Sum_probs=81.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-cc-eeccccccCCCC--CCccCeeeecccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-FG-LYHDWCESFNTY--PRTYDLLHADHLFST 144 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-~~-~~~d~~e~f~~y--p~sFDlVh~~~v~~h 144 (221)
...+|||+|||+|.++..|++++. +++++|.+ .+++.+.++.. +. ...|+.+.++ + +++||+|+|+
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~~~fD~v~~~----- 118 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELP-AGLGAPFGLIVSR----- 118 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCC-TTCCCCEEEEEEE-----
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccC-CcCCCCEEEEEeC-----
Confidence 367899999999999999999864 57889986 59999988822 11 2345444443 4 4899999987
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
. ++..+|.|+.|+|||||.++..........+...+....+...
T Consensus 119 -~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~ 162 (226)
T 3m33_A 119 -R-GPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIV 162 (226)
T ss_dssp -S-CCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEE
T ss_pred -C-CHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEE
Confidence 3 6789999999999999999944333334567777777666653
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=106.15 Aligned_cols=135 Identities=15% Similarity=0.156 Sum_probs=92.0
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCC---CCCccCeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNT---YPRTYDLLH 137 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~---yp~sFDlVh 137 (221)
....+|||+|||+|.++..|+.. +.. +|+.+|.+ ++++++.++ |+.+ +++.-.+.++. ++++||+|.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPEL--ELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTC--EEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence 45789999999999998888764 322 56888886 477766654 5532 33322333432 348999999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcC---hhhHHHHHHHHHhcCCeEEEee------cCCCeeEEEEEeccc
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD---AETIVEVEDLVKSLHWDVRMIY------TNDNQGMLCVHKTYW 208 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~---~~~~~~i~~i~~~l~W~~~~~~------~~~~e~~l~~~K~~w 208 (221)
|..+ . +...++.++.|+|||||.+++-.. .+.+..++..++.+.++..... .+....+++.+|.-.
T Consensus 157 s~a~----~-~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~~~ 231 (249)
T 3g89_A 157 ARAV----A-PLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAP 231 (249)
T ss_dssp EESS----C-CHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEECSC
T ss_pred ECCc----C-CHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeCCC
Confidence 9743 2 567899999999999999988754 3445666677788888765321 123445666777655
Q ss_pred CC
Q 027609 209 RP 210 (221)
Q Consensus 209 ~~ 210 (221)
+|
T Consensus 232 t~ 233 (249)
T 3g89_A 232 TP 233 (249)
T ss_dssp CC
T ss_pred CC
Confidence 44
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-11 Score=101.46 Aligned_cols=112 Identities=12% Similarity=-0.019 Sum_probs=82.5
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-c--ee-ccccccCCCCCCccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-G--LY-HDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~--~~-~d~~e~f~~yp~sFDlVh~~ 139 (221)
....+|||+|||+|.++..|++++. .|+++|.+ ++++.+.++ |+. . .+ .|..+.+. ...+||+|.+.
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~~~D~v~~~ 129 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA-DLPLPEAVFIG 129 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT-TSCCCSEEEEC
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc-cCCCCCEEEEC
Confidence 4468999999999999999999853 46888886 588877665 444 2 22 23222121 22689999987
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeEE
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~~ 190 (221)
..+ ++. ++.++.|+|||||.+++.... +...++.+.++...+++.
T Consensus 130 ~~~-----~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~ 175 (204)
T 3njr_A 130 GGG-----SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLL 175 (204)
T ss_dssp SCC-----CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEE
T ss_pred Ccc-----cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEE
Confidence 643 466 999999999999999998754 456777777888887765
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-12 Score=114.57 Aligned_cols=126 Identities=15% Similarity=0.098 Sum_probs=85.0
Q ss_pred CCCCeEEeecCcchHHHHHHhhC--CCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCC-CccCeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYP-RTYDLLH 137 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~--~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp-~sFDlVh 137 (221)
....+|||+|||+|++++.++.+ +. .|+++|.+ ++++.|+++ |+.. . ..|. ..+| ++||+|.
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa----~~l~d~~FDvV~ 193 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE----TVIDGLEFDVLM 193 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCG----GGGGGCCCSEEE
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECch----hhCCCCCcCEEE
Confidence 34789999999999988765443 33 57888986 588888776 6522 2 2232 2245 9999999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHH----HHHHHHhcCCeEEEeec--C-CCeeEEEEEec
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVE----VEDLVKSLHWDVRMIYT--N-DNQGMLCVHKT 206 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~----i~~i~~~l~W~~~~~~~--~-~~e~~l~~~K~ 206 (221)
+... .. ++..++.|+.|+|||||.+++++.+....- +.. ...-.|+.....+ + -...+.+++|.
T Consensus 194 ~~a~---~~-d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~-~~~~gf~~~~~~~p~~~v~N~vv~a~k~ 264 (298)
T 3fpf_A 194 VAAL---AE-PKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSD-DDITGFRRAGVVLPSGKVNNTSVLVFKC 264 (298)
T ss_dssp ECTT---CS-CHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCT-GGGTTEEEEEEECCCTTCCCEEEEEEEC
T ss_pred ECCC---cc-CHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCCh-hhhhhhhheeEECCCCCcCcEEEEEEcc
Confidence 8654 24 889999999999999999999986543110 000 1122677654432 2 25668888774
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-12 Score=115.71 Aligned_cols=97 Identities=10% Similarity=0.166 Sum_probs=71.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccc-eeccccccCCCCCCccCeeeeccccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADHLFSTIKK 147 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~-~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~ 147 (221)
....+|||+|||+|.++..|+++.-. ..++.+|.+.+++.+.+..-+. ..+|. +.++|. ||+|.+..+++|+.
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~---~~~~p~-~D~v~~~~~lh~~~- 260 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPK-LKCIVFDRPQVVENLSGSNNLTYVGGDM---FTSIPN-ADAVLLKYILHNWT- 260 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCBTTEEEEECCT---TTCCCC-CSEEEEESCGGGSC-
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCC-CeEEEeeCHHHHhhcccCCCcEEEeccc---cCCCCC-ccEEEeehhhccCC-
Confidence 35689999999999999999876211 1456777655666554421122 23443 234554 99999999999998
Q ss_pred cHH--HHHHHhhhhccC---CeEEEEEcC
Q 027609 148 SLK--AVVAEVDRILRP---DGNLILRDD 171 (221)
Q Consensus 148 d~~--~vL~EmdRVLRP---GG~~ii~d~ 171 (221)
++. .+|.++.|+||| ||++++.|.
T Consensus 261 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 261 DKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 666 999999999999 999999863
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-11 Score=103.28 Aligned_cols=135 Identities=15% Similarity=0.064 Sum_probs=89.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCC-----CccCe
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYP-----RTYDL 135 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp-----~sFDl 135 (221)
..++|||+|||+|.++..|++.--....|+++|.+ .+++.+.++ |+.. + ..|..+.++.++ ++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 46899999999999999998841001256888886 588877764 4422 2 234333233333 79999
Q ss_pred eeeccccccccccHHHHHHHhhhhccCCeEEEEEcChh--hHHHHHHHHHhcCCeEEEee-----cCCCeeEEEEEec
Q 027609 136 LHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE--TIVEVEDLVKSLHWDVRMIY-----TNDNQGMLCVHKT 206 (221)
Q Consensus 136 Vh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~--~~~~i~~i~~~l~W~~~~~~-----~~~~e~~l~~~K~ 206 (221)
|.++...+++. +...++.++ |+|||||++++.+... .-+-++.+...-.+++.... ....+.+.++.+.
T Consensus 138 V~~d~~~~~~~-~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~ 213 (221)
T 3u81_A 138 VFLDHWKDRYL-PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ 213 (221)
T ss_dssp EEECSCGGGHH-HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred EEEcCCcccch-HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence 99998888777 677788888 9999999999987532 11222333334456655432 1235678888764
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=101.18 Aligned_cols=119 Identities=14% Similarity=0.163 Sum_probs=83.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCC-CC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNT-YP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~-yp-~sFDlVh~~ 139 (221)
...+|||+|||+|.++..|+++.- ..+++++|.+ .+++.+.++ |+.. .+ .|..+ ++. ++ ++||+|+++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLN 118 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEE
Confidence 356899999999999999988631 1257888886 588777664 4422 22 34332 332 55 899999998
Q ss_pred cccccccc--------cHHHHHHHhhhhccCCeEEEEEcC-hhhHHHHHHHHHhcCCeEEE
Q 027609 140 HLFSTIKK--------SLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 140 ~v~~h~~~--------d~~~vL~EmdRVLRPGG~~ii~d~-~~~~~~i~~i~~~l~W~~~~ 191 (221)
.... +.. ....+|.++.|+|||||.+++... .+..+.+.+++....|....
T Consensus 119 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 178 (214)
T 1yzh_A 119 FSDP-WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG 178 (214)
T ss_dssp SCCC-CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCC-ccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeee
Confidence 4432 211 126899999999999999999864 45667777777777887643
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=103.42 Aligned_cols=118 Identities=8% Similarity=0.042 Sum_probs=81.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCC-CC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNT-YP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~-yp-~sFDlVh~~ 139 (221)
...+|||+|||+|.++..|+++.- ..+++++|.+ .+++.+.++ |+.+ .+ .|..+ ++. ++ ++||.|+++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLN 115 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEE
Confidence 356799999999999999988621 1267899987 588877664 5533 22 34322 322 55 899999876
Q ss_pred cccccccc--------cHHHHHHHhhhhccCCeEEEEEc-ChhhHHHHHHHHHhcCCeEE
Q 027609 140 HLFSTIKK--------SLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 140 ~v~~h~~~--------d~~~vL~EmdRVLRPGG~~ii~d-~~~~~~~i~~i~~~l~W~~~ 190 (221)
.... |.. ....+|.|+.|+|||||.+++.. .....+.+...+....|...
T Consensus 116 ~~~p-~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 116 FSDP-WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp SCCC-CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCC-CcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 3322 211 13689999999999999999885 44556677777666677653
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-11 Score=103.18 Aligned_cols=133 Identities=11% Similarity=0.053 Sum_probs=88.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc----eeccccccCCCCC--CccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG----LYHDWCESFNTYP--RTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~----~~~d~~e~f~~yp--~sFDlVh~ 138 (221)
..++|||+|||+|.++..|++.--....++++|.+ ++++.+.++ |+.. ...|..+.++.++ .+||+|.+
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 46899999999999999998871001256888886 588877766 5432 2234333233333 49999998
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEEcChh------------hHHHHHHH----HHhcCCeEEEee---cCCCee
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE------------TIVEVEDL----VKSLHWDVRMIY---TNDNQG 199 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~------------~~~~i~~i----~~~l~W~~~~~~---~~~~e~ 199 (221)
.... . +...++.++.|+|||||++++.+... ....++++ ...-+|.+.+.. ....++
T Consensus 143 d~~~---~-~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~DG 218 (248)
T 3tfw_A 143 DADK---P-NNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVGTKGWDG 218 (248)
T ss_dssp CSCG---G-GHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEECSTTCSEE
T ss_pred CCch---H-HHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecCCCCCCCe
Confidence 7532 2 56689999999999999999986532 12333333 344466665432 134689
Q ss_pred EEEEEec
Q 027609 200 MLCVHKT 206 (221)
Q Consensus 200 ~l~~~K~ 206 (221)
+.+++|+
T Consensus 219 ~~i~~~~ 225 (248)
T 3tfw_A 219 FTLAWVN 225 (248)
T ss_dssp EEEEEEC
T ss_pred eEEEEEe
Confidence 9999985
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-12 Score=116.24 Aligned_cols=99 Identities=13% Similarity=0.169 Sum_probs=72.2
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccc-eeccccccCCCCCCccCeeeecccccccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADHLFSTIK 146 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~-~~~d~~e~f~~yp~sFDlVh~~~v~~h~~ 146 (221)
.....+|||+|||+|.++..|+++.-. ..++.+|.+.+++.+.++.-+. ..+|. +.++|.. |+|++..++|||.
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~---~~~~p~~-D~v~~~~vlh~~~ 275 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPS-INAINFDLPHVIQDAPAFSGVEHLGGDM---FDGVPKG-DAIFIKWICHDWS 275 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCCTTEEEEECCT---TTCCCCC-SEEEEESCGGGBC
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEehHHHHHhhhhcCCCEEEecCC---CCCCCCC-CEEEEechhhcCC
Confidence 456789999999999999999885211 1346666655666554432222 23453 3456744 9999999999998
Q ss_pred c-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 147 K-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 147 ~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+ +...+|.++.|+|||||.++|.|.
T Consensus 276 ~~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 276 DEHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 4 456899999999999999999863
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-12 Score=108.36 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=61.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-C-CHHHH---HH----cCccce--eccccccCCC-CCCccCeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-D-TLPII---YE----RGLFGL--YHDWCESFNT-YPRTYDLLH 137 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~-~l~~a---~e----RGl~~~--~~d~~e~f~~-yp~sFDlVh 137 (221)
...+|||+|||+|.++..|+.+.- ..+|+++|.+ . |++.| .+ .|+.++ +..-.+.++. +...+|.|+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 467899999999999999985421 1367999987 4 76665 43 344332 2211233321 114444444
Q ss_pred ecccc----ccccccHHHHHHHhhhhccCCeEEEE
Q 027609 138 ADHLF----STIKKSLKAVVAEVDRILRPDGNLIL 168 (221)
Q Consensus 138 ~~~v~----~h~~~d~~~vL~EmdRVLRPGG~~ii 168 (221)
++... .|...++..+|.|+.|+|||||.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 43221 11111446789999999999999999
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.6e-12 Score=113.30 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=72.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cccc---ee-ccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLFG---LY-HDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl~~---~~-~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|++++.. +|+++|.+++++.|.++ |+.+ .+ .|. +.+ ++| ++||+|.|..
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~--~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~-~~~-~~~~~~fD~Iis~~ 141 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV-EEV-ELPVEKVDIIISEW 141 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCS--EEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCT-TTC-CCSSSCEEEEEECC
T ss_pred CCCEEEEEeccchHHHHHHHHCCCC--EEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcH-HHc-cCCCCceEEEEEcc
Confidence 4678999999999999999998753 46788887777766654 4432 23 332 333 477 9999999976
Q ss_pred ccccc--cccHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTI--KKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~--~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+..++ ..++..++.+++|+|||||+++..
T Consensus 142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 142 MGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 54433 238999999999999999999755
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.26 E-value=8.2e-12 Score=107.64 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=83.0
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhC---CCeEEEeccCCCC-CCHHHHHHc-----Cccc--e-eccccccCCCCC-Ccc
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESP-DTLPIIYER-----GLFG--L-YHDWCESFNTYP-RTY 133 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~---~v~vmnv~~~d~~-~~l~~a~eR-----Gl~~--~-~~d~~e~f~~yp-~sF 133 (221)
......+|||+|||+|.++..|++. +. +++++|.+ ++++.+.++ |+.. . ..|..+ +++ ++|
T Consensus 107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~---~~~~~~f 180 (275)
T 1yb2_A 107 GLRPGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD---FISDQMY 180 (275)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT---CCCSCCE
T ss_pred CCCCcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc---cCcCCCc
Confidence 3445789999999999999999876 33 56888886 588877766 5322 2 234322 455 899
Q ss_pred CeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEE
Q 027609 134 DLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 134 DlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~ 190 (221)
|+|.+ |.+ ++..+|.++.|+|||||.+++.+... ..+++.+.++...|...
T Consensus 181 D~Vi~-----~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~ 232 (275)
T 1yb2_A 181 DAVIA-----DIP-DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHL 232 (275)
T ss_dssp EEEEE-----CCS-CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEE
T ss_pred cEEEE-----cCc-CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEE
Confidence 99998 355 78899999999999999999998765 45666666666666643
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-12 Score=110.93 Aligned_cols=102 Identities=10% Similarity=0.024 Sum_probs=75.3
Q ss_pred CCCCeEEeecCcc---hHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcC----ccc-eecccccc-----C----CCC
Q 027609 69 SFVRNVMDMRAVY---GGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERG----LFG-LYHDWCES-----F----NTY 129 (221)
Q Consensus 69 ~~~r~VLD~GcG~---G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRG----l~~-~~~d~~e~-----f----~~y 129 (221)
..+++|||+|||+ |.++..+... +- ..|+.+|.+ .|++.+.++- -+. +..|..+. . ..+
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~--~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPD--ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTT--CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCC--CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccC
Confidence 3478999999999 9887766553 21 257889986 6999888762 111 12232210 0 125
Q ss_pred C-CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 130 P-RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 130 p-~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+ .+||+|.+..+|+|+++ ++..+|.|+.|+|||||+|++++..
T Consensus 154 d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred CCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 5 69999999999999984 4999999999999999999999754
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.25 E-value=9.1e-12 Score=104.33 Aligned_cols=129 Identities=11% Similarity=0.083 Sum_probs=83.2
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCc--cc---eeccccccC--CCCCCccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGL--FG---LYHDWCESF--NTYPRTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl--~~---~~~d~~e~f--~~yp~sFDlVh~~ 139 (221)
....+|||+|||+|.++..|+++ +. ..|+++|.+ .+++.+.++.- .. ...|..+.. .+++.+||+|.++
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADK--GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTT--SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCC--cEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe
Confidence 34678999999999999999887 41 256888886 48877766521 11 223422210 2344789999832
Q ss_pred cccccccccH---HHHHHHhhhhccCCeEEEEE----cCh------h-hHHHHHHHHHhcCCeEEEeec----CCCeeEE
Q 027609 140 HLFSTIKKSL---KAVVAEVDRILRPDGNLILR----DDA------E-TIVEVEDLVKSLHWDVRMIYT----NDNQGML 201 (221)
Q Consensus 140 ~v~~h~~~d~---~~vL~EmdRVLRPGG~~ii~----d~~------~-~~~~i~~i~~~l~W~~~~~~~----~~~e~~l 201 (221)
.. ++ ..+|.++.|+|||||++++. ... . ..+.++ ++.+..++...... ..+--++
T Consensus 151 -----~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v 223 (230)
T 1fbn_A 151 -----VA-QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMF 223 (230)
T ss_dssp -----CC-STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEE
T ss_pred -----cC-ChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEEE
Confidence 33 44 78899999999999999995 110 0 225666 66666776543221 1235677
Q ss_pred EEEec
Q 027609 202 CVHKT 206 (221)
Q Consensus 202 ~~~K~ 206 (221)
+++|+
T Consensus 224 ~~~k~ 228 (230)
T 1fbn_A 224 VGIWE 228 (230)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88873
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.7e-12 Score=106.32 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=78.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCC-CCC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFN-TYP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~-~yp-~sFDlVh~~ 139 (221)
....|||+|||+|.++..|+++.-. .+++++|.+ .+++.+.++ |+.+ . ..|..+.++ .++ ++||.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 4678999999999999999876322 257899986 477765544 5533 2 234322122 156 999999987
Q ss_pred cccccccc--cH------HHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhc-CCeE
Q 027609 140 HLFSTIKK--SL------KAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSL-HWDV 189 (221)
Q Consensus 140 ~v~~h~~~--d~------~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l-~W~~ 189 (221)
.... |+. .. ..++.++.|+|||||.+++....+ ..+.+..++... .|+.
T Consensus 113 ~~~p-~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~ 171 (218)
T 3dxy_A 113 FPDP-WHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKN 171 (218)
T ss_dssp SCCC-CCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred CCCC-ccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCccc
Confidence 3332 221 11 259999999999999999986544 566666665543 4543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=101.47 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=86.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCC----CccCee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYP----RTYDLL 136 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp----~sFDlV 136 (221)
...+|||+|||+|.++..|++.--....++++|.+ .+++.+.++ |+.. . ..|..+.++.++ .+||+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 46799999999999999999871101256888875 577776654 5432 2 234323222222 579999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEcChh------------hHHHHHHHH----HhcCCeEEEee---cCCC
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE------------TIVEVEDLV----KSLHWDVRMIY---TNDN 197 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~------------~~~~i~~i~----~~l~W~~~~~~---~~~~ 197 (221)
.+..... +...++.++.|+|||||++++.+... ....++++. ..-++.+.+.. ..+.
T Consensus 138 ~~d~~~~----~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~ 213 (223)
T 3duw_A 138 FIDADKQ----NNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTVGSKGY 213 (223)
T ss_dssp EECSCGG----GHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETTEE
T ss_pred EEcCCcH----HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEeccCCCCC
Confidence 9876533 45689999999999999999975432 123333333 33456655432 3446
Q ss_pred eeEEEEEec
Q 027609 198 QGMLCVHKT 206 (221)
Q Consensus 198 e~~l~~~K~ 206 (221)
+++++++++
T Consensus 214 dG~~~~~~~ 222 (223)
T 3duw_A 214 DGFIMAVVK 222 (223)
T ss_dssp EEEEEEEEC
T ss_pred CeeEEEEEe
Confidence 788888864
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-12 Score=113.84 Aligned_cols=96 Identities=11% Similarity=0.109 Sum_probs=59.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCcc------c--eeccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLF------G--LYHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~------~--~~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|+++..|++++ . |+++|.+.|+..+.++... + .+.+ +..+..+| ++||+|.|+.
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~~-~---V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~-~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASRP-H---VMDVRAYTLGVGGHEVPRITESYGWNIVKFKS-RVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTST-T---EEEEEEECCCCSSCCCCCCCCBTTGGGEEEEC-SCCTTTSCCCCCSEEEECC
T ss_pred CCCEEEEeCcCCCHHHHHHHHcC-c---EEEEECchhhhhhhhhhhhhhccCCCeEEEec-ccCHhHCCCCCCcEEEEeC
Confidence 36789999999999999998872 2 3444443332211111111 1 1210 11122345 8999999986
Q ss_pred ccccccc---cHH---HHHHHhhhhccCCe--EEEEEcC
Q 027609 141 LFSTIKK---SLK---AVVAEVDRILRPDG--NLILRDD 171 (221)
Q Consensus 141 v~~h~~~---d~~---~vL~EmdRVLRPGG--~~ii~d~ 171 (221)
. .+... +.. .+|.++.|+||||| .|++..-
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 6 32210 111 38999999999999 9999753
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=112.43 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=73.6
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Ccc---ceec-cccccCCCCCCccCeeeec
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLF---GLYH-DWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl~---~~~~-d~~e~f~~yp~sFDlVh~~ 139 (221)
.....+|||+|||+|.++..+++++.. +|+++|.++|++.+.++ |+. .+++ |. +.+ ++|++||+|+|.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g~~--~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~-~~~~~~D~Iv~~ 136 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAGAR--KVYAVEATKMADHARALVKANNLDHIVEVIEGSV-EDI-SLPEKVDVIISE 136 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTTCS--EEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCG-GGC-CCSSCEEEEEEC
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcCCC--EEEEEccHHHHHHHHHHHHHcCCCCeEEEEECch-hhc-CcCCcceEEEEc
Confidence 345789999999999999999998752 56888877888776654 442 2333 43 333 256999999996
Q ss_pred ccccccc--ccHHHHHHHhhhhccCCeEEEEEc
Q 027609 140 HLFSTIK--KSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 140 ~v~~h~~--~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.+.+.+. .++..++.+++|+|||||.+++++
T Consensus 137 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 137 WMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred ChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 5444332 278899999999999999998874
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.3e-12 Score=112.74 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=86.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----CccceeccccccCCCC-CCccCeeeeccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGLYHDWCESFNTY-PRTYDLLHADHLFS 143 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~~d~~e~f~~y-p~sFDlVh~~~v~~ 143 (221)
...+|||+|||+|.++..|++++-. .+++++|.+ .+++.+.++ |+...+. .+..+ .+ +++||+|.|+..|+
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~-~~d~~-~~~~~~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPK-IRLTLCDVSAPAVEASRATLAANGVEGEVF-ASNVF-SEVKGRFDMIISNPPFH 272 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTT-CBCEEEESBHHHHHHHHHHHHHTTCCCEEE-ECSTT-TTCCSCEEEEEECCCCC
T ss_pred CCCeEEEecCccCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCEEE-Ecccc-ccccCCeeEEEECCCcc
Confidence 3568999999999999999887421 156888886 478877665 3322221 12222 34 48999999999887
Q ss_pred c-----ccccHHHHHHHhhhhccCCeEEEEEcCh--hhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEec
Q 027609 144 T-----IKKSLKAVVAEVDRILRPDGNLILRDDA--ETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT 206 (221)
Q Consensus 144 h-----~~~d~~~vL~EmdRVLRPGG~~ii~d~~--~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K~ 206 (221)
+ .. +...+|.|+.|+|||||.+++.... +.-..++..+.. +...-.+.+=+|+.++|.
T Consensus 273 ~g~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~~----~~~~~~~~gf~v~~~~k~ 337 (343)
T 2pjd_A 273 DGMQTSLD-AAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGF----HEVIAQTGRFKVYRAIMT 337 (343)
T ss_dssp SSSHHHHH-HHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHSC----CEEEEECSSEEEEEEEC-
T ss_pred cCccCCHH-HHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcCc----eEEEeeCCCEEEEEEEeC
Confidence 5 23 7889999999999999999998543 233344444332 222334456677777663
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.7e-12 Score=106.43 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=76.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----------Cccc--ee-ccccccCCC-CC-Ccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----------GLFG--LY-HDWCESFNT-YP-RTY 133 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----------Gl~~--~~-~d~~e~f~~-yp-~sF 133 (221)
...+|||+|||+|.++..|+.+.-. .+++++|.+ .+++.|.++ ++.+ .+ .|..+.++. |+ ++|
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPD-TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTT-SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4568999999999999999886311 267899987 588877643 3332 22 343221221 56 999
Q ss_pred Ceeeeccccccccc--------cHHHHHHHhhhhccCCeEEEEE-cChhhHHHHHHHHHhcC-CeE
Q 027609 134 DLLHADHLFSTIKK--------SLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLH-WDV 189 (221)
Q Consensus 134 DlVh~~~v~~h~~~--------d~~~vL~EmdRVLRPGG~~ii~-d~~~~~~~i~~i~~~l~-W~~ 189 (221)
|.|+++.... |.. ....+|.|+.|+|||||.|++. |.....+.+.+.+..-. |..
T Consensus 125 D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~ 189 (235)
T 3ckk_A 125 TKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFER 189 (235)
T ss_dssp EEEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred eEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 9998753221 110 0147999999999999999986 44455566655555443 443
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=102.22 Aligned_cols=118 Identities=13% Similarity=0.139 Sum_probs=79.1
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHH--------HcCccc--e-eccccccCCCCC-CccCe
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIY--------ERGLFG--L-YHDWCESFNTYP-RTYDL 135 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~--------eRGl~~--~-~~d~~e~f~~yp-~sFDl 135 (221)
....+|||+|||+|.++..|+++.- ..+++++|.+ +|++.+. .+|+.. . ..|. +.+ +++ ++ |.
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~-~~l-~~~~~~-d~ 101 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATA-ERL-PPLSGV-GE 101 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCS-TTC-CSCCCE-EE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecch-hhC-CCCCCC-CE
Confidence 3467899999999999999998721 1267899986 5787532 234433 2 2343 334 355 55 66
Q ss_pred eeec---cccc--cccccHHHHHHHhhhhccCCeEEEEEcC------------------hh-hHHHHHHHHHhcCCeEEE
Q 027609 136 LHAD---HLFS--TIKKSLKAVVAEVDRILRPDGNLILRDD------------------AE-TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 136 Vh~~---~v~~--h~~~d~~~vL~EmdRVLRPGG~~ii~d~------------------~~-~~~~i~~i~~~l~W~~~~ 191 (221)
+... ..+. |.. ++..+|.|+.|+|||||.++++.. .. ..+.+.+.+..-.|++..
T Consensus 102 v~~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 102 LHVLMPWGSLLRGVLG-SSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp EEEESCCHHHHHHHHT-SSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEEccchhhhhhhhc-cHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 6632 2222 455 779999999999999999999631 11 234477888888998753
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.7e-12 Score=114.27 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=72.5
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccc-eeccccccCCCCCCccCeeeecccccccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADHLFSTIK 146 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~-~~~d~~e~f~~yp~sFDlVh~~~v~~h~~ 146 (221)
.....+|||+|||+|.++..|+++.-. ..++.+|.+.+++.+.++.-+. ..+|. +.++|.. |+|++..++|||.
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~D~---~~~~p~~-D~v~~~~vlh~~~ 273 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPT-IKGVNFDLPHVISEAPQFPGVTHVGGDM---FKEVPSG-DTILMKWILHDWS 273 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCCTTEEEEECCT---TTCCCCC-SEEEEESCGGGSC
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCC-CeEEEecCHHHHHhhhhcCCeEEEeCCc---CCCCCCC-CEEEehHHhccCC
Confidence 456789999999999999999875211 1346666655665554432222 23453 3356744 9999999999997
Q ss_pred c-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 147 K-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 147 ~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+ +...+|.++.|+|||||+++|.|.
T Consensus 274 d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 274 DQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 4 567899999999999999999863
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.9e-12 Score=102.93 Aligned_cols=126 Identities=10% Similarity=0.088 Sum_probs=83.9
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc--cc--ee-ccccccCCCCC-Cc-cCeeee
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL--FG--LY-HDWCESFNTYP-RT-YDLLHA 138 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl--~~--~~-~d~~e~f~~yp-~s-FDlVh~ 138 (221)
..+|||+|||+|.++..++.++.. .|+++|.+ ++++.+.++ |+ .. .+ .|..+.++.++ ++ ||+|.+
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCeEEEcCCccCHHHHHHHHccCC--EEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 568999999999999988877642 57899987 588877765 33 12 22 34322222233 78 999999
Q ss_pred ccccccccccHHHHHHHh--hhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 139 DHLFSTIKKSLKAVVAEV--DRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~Em--dRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
+..|+ .. +...++.++ .|+|||||.+++...... +.. ..-.|.......-+...+.+.+|
T Consensus 132 ~~~~~-~~-~~~~~l~~~~~~~~LkpgG~l~i~~~~~~---~~~--~~~~~~~~~~~~yG~~~~~~~~~ 193 (201)
T 2ift_A 132 DPPFH-FN-LAEQAISLLCENNWLKPNALIYVETEKDK---PLI--TPENWTLLKEKTTGIVSYRLYQN 193 (201)
T ss_dssp CCCSS-SC-HHHHHHHHHHHTTCEEEEEEEEEEEESSS---CCC--CCTTEEEEEEEEETTEEEEEEEE
T ss_pred CCCCC-Cc-cHHHHHHHHHhcCccCCCcEEEEEECCCC---Ccc--ccchhHHHHHHhcCCEEEEEEec
Confidence 87764 33 778899999 889999999999876533 110 01246543322334556666555
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.23 E-value=9.8e-12 Score=105.31 Aligned_cols=111 Identities=10% Similarity=0.085 Sum_probs=76.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc------------Cccc--e-eccccccCCC-CC-C
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER------------GLFG--L-YHDWCESFNT-YP-R 131 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR------------Gl~~--~-~~d~~e~f~~-yp-~ 131 (221)
...+|||+|||+|.|+..|+..+.. .+++++|.+ .+++.+.++ |+.+ . ..|..+.++. |+ +
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4578999999999999999887422 267899986 488777654 5533 2 2343221221 55 8
Q ss_pred ccCeeeeccccccccccH-------------HHHHHHhhhhccCCeEEEEE-cChhhHHHHHHHHHhcCC
Q 027609 132 TYDLLHADHLFSTIKKSL-------------KAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHW 187 (221)
Q Consensus 132 sFDlVh~~~v~~h~~~d~-------------~~vL~EmdRVLRPGG~~ii~-d~~~~~~~i~~i~~~l~W 187 (221)
+||.|... ++ ++ ..++.++.|+|||||.+++. |...+.+.+...+..-.+
T Consensus 128 ~~d~v~~~-----~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 128 QLSKMFFC-----FP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp CEEEEEEE-----SC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred ccCEEEEE-----CC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 88888743 23 23 48999999999999999985 555556666655555443
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=107.88 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=84.9
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCCCCccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~yp~sFDlVh~~~v 141 (221)
..+|||+|||+|+|+..+++++.. .|+++|.+ .+++.+.++ |+.+ .+ .|. ..+.+ +++||+|.++..
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~-~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN-RDFPG-ENIADRILMGYV 201 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT-TTCCC-CSCEEEEEECCC
T ss_pred CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCH-HHhcc-cCCccEEEECCc
Confidence 679999999999999999988653 57899986 588877665 5533 22 232 22322 589999998633
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcCh-------hhHHHHHHHHHhcCCeEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDA-------ETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-------~~~~~i~~i~~~l~W~~~~ 191 (221)
. +...++.++.|+|||||++++.+.. +..+.+.+.++...|++..
T Consensus 202 ~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 V-----RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp S-----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred h-----hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 2 4467899999999999999997654 3568888899999998865
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=100.36 Aligned_cols=131 Identities=17% Similarity=0.134 Sum_probs=84.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCC-----CccCe
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYP-----RTYDL 135 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp-----~sFDl 135 (221)
...+|||+|||+|.++..|++.--....++++|.+ .+++.+.++ |+.. . ..|..+.++.++ ++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 46799999999999999998861001257888886 577777665 4432 2 224323222222 79999
Q ss_pred eeeccccccccccHHHHHHHhhhhccCCeEEEEEcChh------------hHHHHHHHHH----hcCCeEEEeecCCCee
Q 027609 136 LHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE------------TIVEVEDLVK----SLHWDVRMIYTNDNQG 199 (221)
Q Consensus 136 Vh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~------------~~~~i~~i~~----~l~W~~~~~~~~~~e~ 199 (221)
|++... ..+...++.++.|+|||||++++.+... ....++.+.. .-+|...+.. -.+.
T Consensus 144 v~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp--~~dG 217 (225)
T 3tr6_A 144 IYIDAD----KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIP--IGDG 217 (225)
T ss_dssp EEECSC----GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEC--STTC
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEE--cCCc
Confidence 997643 2267789999999999999999986431 1233444433 3345554432 2456
Q ss_pred EEEEEec
Q 027609 200 MLCVHKT 206 (221)
Q Consensus 200 ~l~~~K~ 206 (221)
+++++|.
T Consensus 218 ~~~~~k~ 224 (225)
T 3tr6_A 218 LTLARKK 224 (225)
T ss_dssp EEEEEEC
T ss_pred cEEEEEC
Confidence 8888874
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=109.29 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=70.3
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cc---cceec-cccccCCCCC-CccCeeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GL---FGLYH-DWCESFNTYP-RTYDLLHA 138 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl---~~~~~-d~~e~f~~yp-~sFDlVh~ 138 (221)
..+..+|||+|||+|.++..+++.+.. .++++|.+++++.+.++ |+ +..+. |. +.+ ++| ++||+|.|
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~--~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~-~~~~~~~D~Ivs 137 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI-EEV-HLPVEKVDVIIS 137 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT-TTS-CCSCSCEEEEEE
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCC--EEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeH-HHh-cCCCCcEEEEEE
Confidence 345679999999999999999998742 46778876677776654 43 22232 32 223 466 89999999
Q ss_pred ccc---cccccccHHHHHHHhhhhccCCeEEE
Q 027609 139 DHL---FSTIKKSLKAVVAEVDRILRPDGNLI 167 (221)
Q Consensus 139 ~~v---~~h~~~d~~~vL~EmdRVLRPGG~~i 167 (221)
..+ +.|.. ++..+|.++.|+|||||.++
T Consensus 138 ~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 138 EWMGYFLLFES-MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CCCBTTBTTTC-HHHHHHHHHHHHEEEEEEEE
T ss_pred cCchhhccCHH-HHHHHHHHHHhhcCCCcEEE
Confidence 763 33333 78899999999999999998
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=99.49 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=74.7
Q ss_pred CCeEEeecCcchHHHHHHhhC-CCe-------EEEeccCCCCCCHHHHHHcCccce-ecccccc-C-----CCCC-CccC
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-KVW-------VMNVVPIESPDTLPIIYERGLFGL-YHDWCES-F-----NTYP-RTYD 134 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-~v~-------vmnv~~~d~~~~l~~a~eRGl~~~-~~d~~e~-f-----~~yp-~sFD 134 (221)
..+|||+|||+|.++..|+++ +.. ...++++|.+.+... + +..-. ..|..+. + ..++ ++||
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~--~-~~~~~~~~d~~~~~~~~~~~~~~~~~~fD 99 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPL--E-GATFLCPADVTDPRTSQRILEVLPGRRAD 99 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCC--T-TCEEECSCCTTSHHHHHHHHHHSGGGCEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccC--C-CCeEEEeccCCCHHHHHHHHHhcCCCCCc
Confidence 679999999999999999886 320 025678887653211 1 11111 2221110 0 0145 6999
Q ss_pred eeeeccccc----cccccH-------HHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCe-EEEee-----cCC
Q 027609 135 LLHADHLFS----TIKKSL-------KAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWD-VRMIY-----TND 196 (221)
Q Consensus 135 lVh~~~v~~----h~~~d~-------~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~-~~~~~-----~~~ 196 (221)
+|.|+..++ |.. +. ..+|.|+.|+|||||.+++.+... ....+...++.. +. +.... ...
T Consensus 100 ~V~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~-f~~v~~~~~~~~~~~~ 177 (196)
T 2nyu_A 100 VILSDMAPNATGFRDL-DHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEE-FQNVRIIKPEASRKES 177 (196)
T ss_dssp EEEECCCCCCCSCHHH-HHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHH-EEEEEEECCC------
T ss_pred EEEeCCCCCCCCCccc-CHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHH-hcceEEECCcccCccC
Confidence 999965443 222 33 589999999999999999986432 234444444443 32 22221 234
Q ss_pred CeeEEEEEe
Q 027609 197 NQGMLCVHK 205 (221)
Q Consensus 197 ~e~~l~~~K 205 (221)
.|.+++|+.
T Consensus 178 ~e~~~v~~g 186 (196)
T 2nyu_A 178 SEVYFLATQ 186 (196)
T ss_dssp --EEEEEEE
T ss_pred ceEEEEeee
Confidence 688888775
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-11 Score=110.17 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=73.4
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Ccc---cee-ccccccCCCCCCccCeeeec
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLF---GLY-HDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl~---~~~-~d~~e~f~~yp~sFDlVh~~ 139 (221)
..+..+|||+|||+|.++..+++++.. +|+++|.+.+++.+.++ |+. .++ .|. +.+ ++|.+||+|.|.
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~g~~--~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~-~~~-~~~~~~D~Ivs~ 123 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQAGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKV-EEV-SLPEQVDIIISE 123 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCT-TTC-CCSSCEEEEEEC
T ss_pred cCCcCEEEEcCCCccHHHHHHHhCCCC--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcch-hhC-CCCCceeEEEEe
Confidence 345679999999999999999988652 46777776677766554 542 222 232 222 346889999999
Q ss_pred cccccccc-cHHHHHHHhhhhccCCeEEEEE
Q 027609 140 HLFSTIKK-SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 140 ~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.++.|+.. +....+.++.|+|||||.+++.
T Consensus 124 ~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 124 PMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred CchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 88888764 6678899999999999999865
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-11 Score=102.05 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=82.8
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc----eeccccccCCCCC-CccCe
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG----LYHDWCESFNTYP-RTYDL 135 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~----~~~d~~e~f~~yp-~sFDl 135 (221)
......+|||+|||+|.++..|++. +-. ..++.+|.+ ++++.+.++ |+.+ ...|..+ .++ ++||+
T Consensus 90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~D~ 165 (255)
T 3mb5_A 90 GISPGDFIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE---GIEEENVDH 165 (255)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG---CCCCCSEEE
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh---ccCCCCcCE
Confidence 3445789999999999999999887 211 146888886 588877766 5543 2235433 356 88999
Q ss_pred eeeccccccccccHHHHHHHhhhhccCCeEEEEEcC-hhhHHHHHHHHHhcC--CeE
Q 027609 136 LHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLH--WDV 189 (221)
Q Consensus 136 Vh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-~~~~~~i~~i~~~l~--W~~ 189 (221)
|.++ .+ ++..++.++.|+|||||.+++... .+...++.+.++... |..
T Consensus 166 v~~~-----~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~ 216 (255)
T 3mb5_A 166 VILD-----LP-QPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMK 216 (255)
T ss_dssp EEEC-----SS-CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSC
T ss_pred EEEC-----CC-CHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccc
Confidence 9884 45 678899999999999999998865 445666777777666 643
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6e-12 Score=112.30 Aligned_cols=96 Identities=14% Similarity=0.243 Sum_probs=69.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc-CccceeccccccCCCCCCccCeeeecccccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKS 148 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR-Gl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~d 148 (221)
...+|||+|||+|.++..|+++.-. ..++.+|.+.+++.+.+. ++.-..+|. +.++| +||+|.++.+++|+. +
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~---~~~~~-~~D~v~~~~vlh~~~-d 266 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPH-LKCTVFDQPQVVGNLTGNENLNFVGGDM---FKSIP-SADAVLLKWVLHDWN-D 266 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTT-SEEEEEECHHHHSSCCCCSSEEEEECCT---TTCCC-CCSEEEEESCGGGSC-H
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCC-CeEEEeccHHHHhhcccCCCcEEEeCcc---CCCCC-CceEEEEcccccCCC-H
Confidence 4689999999999999999886211 134555665555544331 111123443 23455 599999999999998 6
Q ss_pred HH--HHHHHhhhhccC---CeEEEEEcC
Q 027609 149 LK--AVVAEVDRILRP---DGNLILRDD 171 (221)
Q Consensus 149 ~~--~vL~EmdRVLRP---GG~~ii~d~ 171 (221)
+. .+|.++.|+||| ||.+++.|.
T Consensus 267 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 267 EQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp HHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 66 999999999999 999999753
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-11 Score=100.15 Aligned_cols=95 Identities=16% Similarity=0.230 Sum_probs=68.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc---ce-eccccccCC-CCCCccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF---GL-YHDWCESFN-TYPRTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~---~~-~~d~~e~f~-~yp~sFDlVh~~ 139 (221)
...+|||+|||+|.++..|++..- ..+++++|.+ .+++.+.++ |+. .+ ..|..+.++ ..+++||+|.+.
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 468999999999999999998421 2257888886 577777664 432 22 234333222 235899999987
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.... +...++.++.|+|||||++++.
T Consensus 150 ~~~~----~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 150 AAKA----QSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp TTSS----SHHHHHHHHGGGEEEEEEEEEE
T ss_pred CcHH----HHHHHHHHHHHhcCCCeEEEEe
Confidence 4432 5668999999999999999994
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-11 Score=110.72 Aligned_cols=125 Identities=20% Similarity=0.246 Sum_probs=85.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-ccee-ccccccCCCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FGLY-HDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~~~-~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
...+|||+|||+|.++..|++++. +|+++|.+ .+++.+.++ |+ +..+ .|..+ + .++ ++||+|.|+..
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~-~-~~~~~~fD~Ii~npp 307 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDE-A-LTEEARFDIIVTNPP 307 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT-T-SCTTCCEEEEEECCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhh-c-cccCCCeEEEEECCc
Confidence 467999999999999999999874 57888886 488777664 22 1222 34322 2 234 89999999998
Q ss_pred ccc-----ccccHHHHHHHhhhhccCCeEEEEEcChh--hHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 142 FST-----IKKSLKAVVAEVDRILRPDGNLILRDDAE--TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 142 ~~h-----~~~d~~~vL~EmdRVLRPGG~~ii~d~~~--~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
|++ .. +...++.++.|+|||||.+++..... +...+++.+. ++... .+.+=+|+-+.|
T Consensus 308 ~~~~~~~~~~-~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~----~v~~l-~~~gF~Vl~a~~ 372 (381)
T 3dmg_A 308 FHVGGAVILD-VAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFG----AFQTL-KVAEYKVLFAEK 372 (381)
T ss_dssp CCTTCSSCCH-HHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHS----CCEEE-EESSSEEEEEEC
T ss_pred hhhcccccHH-HHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhc----cEEEE-eCCCEEEEEEEE
Confidence 887 33 78899999999999999999985432 2334444333 23333 334455555544
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=8.3e-11 Score=105.64 Aligned_cols=138 Identities=12% Similarity=0.093 Sum_probs=98.3
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcC---c---cc-eeccccccCCCCCCccCeeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERG---L---FG-LYHDWCESFNTYPRTYDLLHA 138 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRG---l---~~-~~~d~~e~f~~yp~sFDlVh~ 138 (221)
+++...++|+|+|||+|.++.+|+++.-. +.++-.|.+.+++.+.++- . +. +.+|. |.+-+..+|++.+
T Consensus 175 ~~~~~~~~v~DvGgG~G~~~~~l~~~~p~-~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~---~~~~~~~~D~~~~ 250 (353)
T 4a6d_A 175 FDLSVFPLMCDLGGGAGALAKECMSLYPG-CKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDF---FKDPLPEADLYIL 250 (353)
T ss_dssp SCGGGCSEEEEETCTTSHHHHHHHHHCSS-CEEEEEECHHHHHHHHHHSCC--CCSEEEEESCT---TTSCCCCCSEEEE
T ss_pred cCcccCCeEEeeCCCCCHHHHHHHHhCCC-ceeEeccCHHHHHHHHHhhhhcccCceeeecCcc---ccCCCCCceEEEe
Confidence 45667899999999999999999887322 1345566677888777651 1 11 23442 3222266899999
Q ss_pred ccccccccc-cHHHHHHHhhhhccCCeEEEEEcCh-------h-------------------hHHHHHHHHHhcCCeEEE
Q 027609 139 DHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA-------E-------------------TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 139 ~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~-------~-------------------~~~~i~~i~~~l~W~~~~ 191 (221)
..++|+|++ +-..+|.++.|.|+|||.++|.|.. + ..++.++++.+-.|+...
T Consensus 251 ~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~ 330 (353)
T 4a6d_A 251 ARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQ 330 (353)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEE
T ss_pred eeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence 999999994 3467899999999999999998631 0 135677888888888653
Q ss_pred -eecCCCeeEEEEEecc
Q 027609 192 -IYTNDNQGMLCVHKTY 207 (221)
Q Consensus 192 -~~~~~~e~~l~~~K~~ 207 (221)
........+++|+|.-
T Consensus 331 v~~~~~~~~~i~ArKgt 347 (353)
T 4a6d_A 331 FKKTGAIYDAILARKGT 347 (353)
T ss_dssp EECCSSSCEEEEEECCC
T ss_pred EEEcCCceEEEEEEecC
Confidence 3344456789999964
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-11 Score=97.46 Aligned_cols=129 Identities=14% Similarity=0.154 Sum_probs=78.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCCC-------CC----CccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT-------YP----RTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~-------yp----~sFDlVh~ 138 (221)
...+|||+|||+|+++..|++++. .|+++|.+.+... .++.-+..|..+ ..+ ++ ++||+|.|
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~~~---~~v~~~~~D~~~-~~~~~~~~~~~~~~~~~~~D~Vls 97 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEMEEI---AGVRFIRCDIFK-ETIFDDIDRALREEGIEKVDDVVS 97 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCCCC---TTCEEEECCTTS-SSHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CCCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccccC---CCeEEEEccccC-HHHHHHHHHHhhcccCCcceEEec
Confidence 478999999999999999999854 3566776543210 122223344322 111 11 59999999
Q ss_pred ccccc--------cccc--cHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeEE-Eee-----cCCCeeEE
Q 027609 139 DHLFS--------TIKK--SLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVR-MIY-----TNDNQGML 201 (221)
Q Consensus 139 ~~v~~--------h~~~--d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~~-~~~-----~~~~e~~l 201 (221)
+.... |... ....+|.++.|+|||||.|++..-. +....+...++.. +... +.. .++.|.++
T Consensus 98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y~ 176 (191)
T 3dou_A 98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKISKPPASRGSSSEIYI 176 (191)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEEECC------CCEEEE
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEEECCCCccCCCceEEE
Confidence 74321 1110 2467899999999999999987432 2234455555443 4332 211 34589999
Q ss_pred EEEec
Q 027609 202 CVHKT 206 (221)
Q Consensus 202 ~~~K~ 206 (221)
||++-
T Consensus 177 v~~~~ 181 (191)
T 3dou_A 177 MFFGF 181 (191)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 99873
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=102.51 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=70.5
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc----cc-eeccccccCCCCCCccCeeeeccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL----FG-LYHDWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl----~~-~~~d~~e~f~~yp~sFDlVh~~~v 141 (221)
.....+|||+|||+|.++..|++.+. +++++|.+ .+++.+.++.- +. ...|..+.+ +.+++||+|.|..+
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~ 143 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY-EEEKPYDRVVVWAT 143 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC-GGGCCEEEEEESSB
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccc-ccCCCccEEEECCc
Confidence 34467999999999999999998762 57888886 58888887721 11 223433211 12389999999999
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
++|+. + ++.|+|||||.+++....
T Consensus 144 ~~~~~-~------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 144 APTLL-C------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp BSSCC-H------HHHHTEEEEEEEEEEECS
T ss_pred HHHHH-H------HHHHHcCCCcEEEEEEcC
Confidence 98877 2 788999999999999764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-11 Score=121.22 Aligned_cols=99 Identities=12% Similarity=0.144 Sum_probs=76.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----------Cccc--e-eccccccCCCCC-CccC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----------GLFG--L-YHDWCESFNTYP-RTYD 134 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----------Gl~~--~-~~d~~e~f~~yp-~sFD 134 (221)
...+|||+|||+|.++..|++++....+|+++|.+ .|++.|.+| |+.. . ..|. +.++ ++ ++||
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa-~dLp-~~d~sFD 798 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI-LEFD-SRLHDVD 798 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT-TSCC-TTSCSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch-HhCC-cccCCee
Confidence 57899999999999999999986322367999987 599988773 3322 2 2343 2243 45 9999
Q ss_pred eeeeccccccccccHH--HHHHHhhhhccCCeEEEEEcCh
Q 027609 135 LLHADHLFSTIKKSLK--AVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 135 lVh~~~v~~h~~~d~~--~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+|.|..+++|+. ++. .++.|+.|+|||| .+++++.+
T Consensus 799 lVV~~eVLeHL~-dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 799 IGTCLEVIEHME-EDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EEEEESCGGGSC-HHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred EEEEeCchhhCC-hHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 999999999999 554 5999999999999 88888654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.9e-12 Score=99.88 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=71.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc---ce-eccccccCCCCCCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF---GL-YHDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~---~~-~~d~~e~f~~yp~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|++++.. +++++|.+ .+++.+.++ |+. .. ..|+.+.++.++++||+|.++.
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 3678999999999999999988642 57899986 588877664 332 12 2343332222457899999987
Q ss_pred ccccccccHHHHHHHhh--hhccCCeEEEEEcCh
Q 027609 141 LFSTIKKSLKAVVAEVD--RILRPDGNLILRDDA 172 (221)
Q Consensus 141 v~~h~~~d~~~vL~Emd--RVLRPGG~~ii~d~~ 172 (221)
.++. . +...++.++. |+|||||.+++....
T Consensus 109 ~~~~-~-~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 109 PYAK-E-TIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp SSHH-H-HHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCc-c-hHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 7642 2 4566777776 999999999998655
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-11 Score=99.70 Aligned_cols=94 Identities=17% Similarity=0.068 Sum_probs=70.4
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCCCccCeeeec
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp~sFDlVh~~ 139 (221)
.....+|||+|||+|.++..|++.+. +++++|.+ ++++.+.++ |+.. . ..|..+ ..+-+++||+|.++
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~D~i~~~ 150 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQ-GWQARAPFDAIIVT 150 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CCGGGCCEEEEEES
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCccc-CCccCCCccEEEEc
Confidence 34578999999999999999998853 56888886 588877765 4332 2 234332 11113899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.+++|+. + ++.|+|||||++++....
T Consensus 151 ~~~~~~~-~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 151 AAPPEIP-T------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SBCSSCC-T------HHHHTEEEEEEEEEEECS
T ss_pred cchhhhh-H------HHHHhcccCcEEEEEEcC
Confidence 9999888 3 688999999999998655
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.8e-11 Score=107.75 Aligned_cols=100 Identities=19% Similarity=0.092 Sum_probs=59.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCCCCHHHHH-H-cCccc--eeccccccCCCCC-CccCeeeeccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESPDTLPIIY-E-RGLFG--LYHDWCESFNTYP-RTYDLLHADHLFS 143 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~~~l~~a~-e-RGl~~--~~~d~~e~f~~yp-~sFDlVh~~~v~~ 143 (221)
...+|||+|||+|+++..|++++ |..+++..+..+.++..+. + .|..+ .+.+ . .+..+| .+||+|.|+..++
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-D~~~l~~~~fD~V~sd~~~~ 159 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-V-DVFFIPPERCDTLLCDIGES 159 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-C-CTTTSCCCCCSEEEECCCCC
T ss_pred CCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-c-ccccCCcCCCCEEEECCccc
Confidence 36799999999999999999883 2222331111122222111 1 12222 2221 0 122344 8999999987653
Q ss_pred --cccccHH---HHHHHhhhhccCCeEEEEEcC
Q 027609 144 --TIKKSLK---AVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 144 --h~~~d~~---~vL~EmdRVLRPGG~~ii~d~ 171 (221)
|+..+.. .+|.++.|+|||||.|++...
T Consensus 160 ~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 160 SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 2211222 589999999999999999744
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.3e-13 Score=110.73 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=73.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc---ccee-ccccccCCCCCCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL---FGLY-HDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl---~~~~-~d~~e~f~~yp~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|++++. +|+++|.+ .+++.+.++ |+ +..+ .|..+ ++ .+++||+|.|+.
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~D~v~~~~ 152 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL-LA-SFLKADVVFLSP 152 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HG-GGCCCSEEEECC
T ss_pred CCCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH-hc-ccCCCCEEEECC
Confidence 467999999999999999999873 57889986 488777655 33 1222 34322 22 238999999999
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.++|.. ++...+.|+.|+|||||++++..
T Consensus 153 ~~~~~~-~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 153 PWGGPD-YATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CCSSGG-GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred CcCCcc-hhhhHHHHHHhhcCCcceeHHHH
Confidence 999877 66668899999999999988775
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-12 Score=98.80 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=68.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-ccee-ccccccCCCCC---CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FGLY-HDWCESFNTYP---RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~~~-~d~~e~f~~yp---~sFDlVh~~ 139 (221)
...+|||+|||+|.++..|++++.. ++++|.+ ++++.+.++ |+ +..+ .|..+.++.++ .+||+|.|+
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 3578999999999999999998653 7899986 588877764 22 1122 23322111122 389999999
Q ss_pred cccccccccHHHHHHHhh--hhccCCeEEEEEcCh
Q 027609 140 HLFSTIKKSLKAVVAEVD--RILRPDGNLILRDDA 172 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~Emd--RVLRPGG~~ii~d~~ 172 (221)
..++ . +...++.++. |+|||||.+++....
T Consensus 118 ~~~~--~-~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 118 PPYA--M-DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CCTT--S-CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred CCCc--h-hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 8775 3 4456666666 999999999998654
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8e-12 Score=109.95 Aligned_cols=94 Identities=14% Similarity=0.076 Sum_probs=59.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCcc------c--e---eccccccCCCCCCccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLF------G--L---YHDWCESFNTYPRTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~------~--~---~~d~~e~f~~yp~sFDlVh~ 138 (221)
...+|||+|||+|+++..|++++ .|+++|.+.|+..+.++... + . ..|. +.++ +++||+|.|
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~~----~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~-~~l~--~~~fD~Vvs 154 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQP----NVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDV-TKME--PFQADTVLC 154 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTST----TEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCG-GGCC--CCCCSEEEE
T ss_pred CCCEEEEeccCCCHHHHHHHHcC----CEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcH-hhCC--CCCcCEEEE
Confidence 46799999999999999999872 23555554343222222211 1 2 2232 2222 489999999
Q ss_pred ccccccccc---cHH---HHHHHhhhhccCCe--EEEEEcC
Q 027609 139 DHLFSTIKK---SLK---AVVAEVDRILRPDG--NLILRDD 171 (221)
Q Consensus 139 ~~v~~h~~~---d~~---~vL~EmdRVLRPGG--~~ii~d~ 171 (221)
+.. .+... +.. .+|.++.|+||||| .|++..-
T Consensus 155 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 155 DIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 866 22210 111 48999999999999 9998743
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-11 Score=103.81 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=81.1
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCCC-C----HHHHHHcCc-cceeccccccC--CCCCCccCeeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPD-T----LPIIYERGL-FGLYHDWCESF--NTYPRTYDLLHA 138 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~-~----l~~a~eRGl-~~~~~d~~e~f--~~yp~sFDlVh~ 138 (221)
.....+|||+|||+|+++..|++. +-. ..|+++|.+. | ++.+.+|.- .-...|..... ...+.+||+|.|
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~-G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~ 152 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELN-GKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYV 152 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTT-SEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEe
Confidence 445789999999999999998875 111 1467778753 4 345555532 22345533221 112479999999
Q ss_pred ccccccccccHHHHH-HHhhhhccCCeEEEEEcC----------hhhHHHHHHHHHhcCCeEEEe-ec---CCCeeEEEE
Q 027609 139 DHLFSTIKKSLKAVV-AEVDRILRPDGNLILRDD----------AETIVEVEDLVKSLHWDVRMI-YT---NDNQGMLCV 203 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL-~EmdRVLRPGG~~ii~d~----------~~~~~~i~~i~~~l~W~~~~~-~~---~~~e~~l~~ 203 (221)
+..+ + +...+| ..+.|+|||||.++++-. .+..+.+...+++-..+..-. +- +.+.-++++
T Consensus 153 d~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~ 228 (232)
T 3id6_C 153 DIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLS 228 (232)
T ss_dssp CCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEE
T ss_pred cCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEE
Confidence 8544 3 444554 456669999999998721 112233444455545554322 11 346778888
Q ss_pred Eecc
Q 027609 204 HKTY 207 (221)
Q Consensus 204 ~K~~ 207 (221)
+|++
T Consensus 229 ~~~~ 232 (232)
T 3id6_C 229 KYKG 232 (232)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 8863
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.18 E-value=8.3e-11 Score=97.51 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=80.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcC--ccc---eecccccc--CCCCCCccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERG--LFG---LYHDWCES--FNTYPRTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRG--l~~---~~~d~~e~--f~~yp~sFDlVh~~ 139 (221)
....+|||+|||+|.++..|+++ +.. ..++++|.+ .+++.+.++. ..+ ...|..+. +.+++.+||+|.++
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 34679999999999999999876 211 146777876 3666554431 111 22343221 12245799999987
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcChh-----------hHHHHHHHHHhcCCeEEEe-ec---CCCeeEEEEE
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE-----------TIVEVEDLVKSLHWDVRMI-YT---NDNQGMLCVH 204 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-----------~~~~i~~i~~~l~W~~~~~-~~---~~~e~~l~~~ 204 (221)
.. .+.....++.++.|+|||||++++.-... ..+.++.+ ..- ++.... +- +...-+++++
T Consensus 151 ~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~~~~~~~~~~~~~ 225 (227)
T 1g8a_A 151 VA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLEPYEKDHALFVVR 225 (227)
T ss_dssp CC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECTTTSSSEEEEEEE
T ss_pred CC---CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccCcccCCCEEEEEE
Confidence 54 22134456999999999999999962111 12456665 443 776432 21 2235577777
Q ss_pred ec
Q 027609 205 KT 206 (221)
Q Consensus 205 K~ 206 (221)
|+
T Consensus 226 ~~ 227 (227)
T 1g8a_A 226 KT 227 (227)
T ss_dssp CC
T ss_pred eC
Confidence 63
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-11 Score=103.90 Aligned_cols=119 Identities=13% Similarity=0.051 Sum_probs=82.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCC-C-CCHHHHHHcC---------c-------cce-eccccccCCCC-
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIES-P-DTLPIIYERG---------L-------FGL-YHDWCESFNTY- 129 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~-~-~~l~~a~eRG---------l-------~~~-~~d~~e~f~~y- 129 (221)
...+|||+|||+|.++..|+..+.. .|+++|. + .+++.+.++. + +.+ ..+|++....+
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~~--~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGAD--QVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCS--EEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCCC--EEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 4679999999999999999988742 4788888 5 5888776652 1 111 23565432222
Q ss_pred ----CCccCeeeeccccccccccHHHHHHHhhhhcc---C--CeEEEEE--cChhh----HHHHHHHHHhcC-CeEEE
Q 027609 130 ----PRTYDLLHADHLFSTIKKSLKAVVAEVDRILR---P--DGNLILR--DDAET----IVEVEDLVKSLH-WDVRM 191 (221)
Q Consensus 130 ----p~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLR---P--GG~~ii~--d~~~~----~~~i~~i~~~l~-W~~~~ 191 (221)
+++||+|.|+.++.|.. +...++.++.|+|| | ||.+++. ...+. ..++.+.+++.. +++..
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~-~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~ 233 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQ-AHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEP 233 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGG-GHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEE
T ss_pred hhccCCCCCEEEEeCcccChH-HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEE
Confidence 38999999999998877 89999999999999 9 9976554 22211 234444566666 76643
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.17 E-value=4.1e-11 Score=98.98 Aligned_cols=127 Identities=9% Similarity=0.074 Sum_probs=83.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc--ccee-ccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL--FGLY-HDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl--~~~~-~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..++.++.. +|+++|.+ .+++.+.++ |+ +.++ .|..+ +.+++ ++||+|.++.
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~-~~~~~~~~fD~V~~~~ 130 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMS-FLAQKGTPHNIVFVDP 130 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHH-HHSSCCCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH-HHhhcCCCCCEEEECC
Confidence 3578999999999999998887643 57899987 588877664 33 1222 34322 22344 8999999987
Q ss_pred ccccccccHHHHHHHhhh--hccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 141 LFSTIKKSLKAVVAEVDR--ILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdR--VLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
.|+ .. +...++.++.+ +|||||.+++....... +.. ..-.|.......-+...+.+.+|
T Consensus 131 p~~-~~-~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~--~~~--~~~~~~~~~~~~~g~~~~~~~~~ 191 (202)
T 2fpo_A 131 PFR-RG-LLEETINLLEDNGWLADEALIYVESEVENG--LPT--VPANWSLHREKVAGQVAYRLYQR 191 (202)
T ss_dssp SSS-TT-THHHHHHHHHHTTCEEEEEEEEEEEEGGGC--SCC--CCTTEEEEEEEEETTEEEEEEEE
T ss_pred CCC-CC-cHHHHHHHHHhcCccCCCcEEEEEECCCcc--ccc--cCCcceEEeeeccCCEEEEEEEE
Confidence 754 33 67788888854 79999999998765321 100 01246654333334566666654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.17 E-value=4e-11 Score=100.48 Aligned_cols=113 Identities=15% Similarity=0.090 Sum_probs=81.4
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc-----Cccc--e-eccccccCCCCC-CccCee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER-----GLFG--L-YHDWCESFNTYP-RTYDLL 136 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR-----Gl~~--~-~~d~~e~f~~yp-~sFDlV 136 (221)
.....+|||+|||+|.++..|++. +-. .+++.+|.+ ++++.+.++ |... . ..|..+ + +++ ++||+|
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~-~~~~~~~D~v 170 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE-A-ELEEAAYDGV 170 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG-C-CCCTTCEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh-c-CCCCCCcCEE
Confidence 345779999999999999999886 211 146888875 588877766 5322 2 234433 2 366 899999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeE
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDV 189 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~ 189 (221)
.++ .+ ++..+|.++.|+|||||.+++.+... ...++.+.++...|..
T Consensus 171 ~~~-----~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~ 218 (258)
T 2pwy_A 171 ALD-----LM-EPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRL 218 (258)
T ss_dssp EEE-----SS-CGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEE
T ss_pred EEC-----Cc-CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 984 45 67899999999999999999998764 4555655666666654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-11 Score=107.08 Aligned_cols=100 Identities=18% Similarity=0.209 Sum_probs=73.5
Q ss_pred CCeEEeecCcchH----HHHHHhhC-CCe--EEEeccCCCC-CCHHHHHHcCc------------------------cc-
Q 027609 71 VRNVMDMRAVYGG----FAAALKDL-KVW--VMNVVPIESP-DTLPIIYERGL------------------------FG- 117 (221)
Q Consensus 71 ~r~VLD~GcG~G~----faa~L~~~-~v~--vmnv~~~d~~-~~l~~a~eRGl------------------------~~- 117 (221)
..+|||+|||+|. +|..|++. +.. ...|+++|.+ ++|+.|.+.-. .|
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4689999999997 66666654 310 1278999997 59999876410 00
Q ss_pred -------------eeccccccCCCCC--CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 118 -------------LYHDWCESFNTYP--RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 118 -------------~~~d~~e~f~~yp--~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
..||+.+ ++|| +.||+|.|..+++|+.. ....++.++.++|||||++++....
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~--~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE 254 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLE--KQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE 254 (274)
T ss_dssp EEECHHHHTTEEEEECCTTC--SSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred eeechhhcccCeEEecccCC--CCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence 1355544 2354 78999999999998873 3489999999999999999997543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-11 Score=106.15 Aligned_cols=127 Identities=10% Similarity=0.197 Sum_probs=91.2
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCCCcc---Ceeee
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYPRTY---DLLHA 138 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp~sF---DlVh~ 138 (221)
..+|||+|||+|.++..|++.+. .+++++|.+ ++++.+.++ |+.+ . ..|+.+ +++.+| |+|.|
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~~~--~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~---~~~~~f~~~D~Ivs 198 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKFSD--AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE---PFKEKFASIEMILS 198 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSS--CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG---GGGGGTTTCCEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh---hcccccCCCCEEEE
Confidence 46899999999999999988722 257889986 588877765 4422 2 235433 334789 99999
Q ss_pred c------------cccccccc-------cHHHHHHHhh-hhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEeecCCCe
Q 027609 139 D------------HLFSTIKK-------SLKAVVAEVD-RILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQ 198 (221)
Q Consensus 139 ~------------~v~~h~~~-------d~~~vL~Emd-RVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~~e 198 (221)
+ .+. |.+. |...++.++. ++|+|||++++.-.....+.+.++++.. ....|-.+.+
T Consensus 199 nPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~---~~~~D~~g~~ 274 (284)
T 1nv8_A 199 NPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT---VFLKDSAGKY 274 (284)
T ss_dssp CCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC---EEEECTTSSE
T ss_pred cCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC---CeecccCCCc
Confidence 7 222 2221 2347899999 9999999999987666677787777665 3355666788
Q ss_pred eEEEEEec
Q 027609 199 GMLCVHKT 206 (221)
Q Consensus 199 ~~l~~~K~ 206 (221)
++++++++
T Consensus 275 R~~~~~~k 282 (284)
T 1nv8_A 275 RFLLLNRR 282 (284)
T ss_dssp EEEEEECC
T ss_pred eEEEEEEc
Confidence 99988775
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=9.6e-11 Score=103.50 Aligned_cols=136 Identities=18% Similarity=0.172 Sum_probs=88.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC------c----cce-eccccccCCC-C-CCccC
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG------L----FGL-YHDWCESFNT-Y-PRTYD 134 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG------l----~~~-~~d~~e~f~~-y-p~sFD 134 (221)
....+|||+|||.|+++..|+++.- +.+++.+|.+ .+++.+.++- + +.+ ..|..+ +.. . +++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~~~~fD 171 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLA-FVRQTPDNTYD 171 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH-HHHSSCTTCEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH-HHHhccCCcee
Confidence 3468999999999999999998731 2257888886 5888887762 1 112 233222 221 1 48999
Q ss_pred eeeeccccccccc-cH--HHHHHHhhhhccCCeEEEEEcCh-----hhHHHHHHHHHhcCCeEEEee-------cCCCee
Q 027609 135 LLHADHLFSTIKK-SL--KAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMIY-------TNDNQG 199 (221)
Q Consensus 135 lVh~~~v~~h~~~-d~--~~vL~EmdRVLRPGG~~ii~d~~-----~~~~~i~~i~~~l~W~~~~~~-------~~~~e~ 199 (221)
+|.++....+.+. .. ..++.++.|+|||||.+++.... .....+.+.+++..+...... ..+.-.
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~ 251 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIG 251 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCE
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceE
Confidence 9999755443331 11 68999999999999999997543 245667777777767543222 124457
Q ss_pred EEEEEec
Q 027609 200 MLCVHKT 206 (221)
Q Consensus 200 ~l~~~K~ 206 (221)
+++|.|.
T Consensus 252 f~~as~~ 258 (304)
T 3bwc_A 252 TLVCSKK 258 (304)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 8889986
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.3e-12 Score=117.46 Aligned_cols=121 Identities=12% Similarity=0.139 Sum_probs=81.3
Q ss_pred hhhccc-CCCCCCCeEEeecCc------chHHHHHHhhC---CCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCC
Q 027609 60 YLNGMG-INWSFVRNVMDMRAV------YGGFAAALKDL---KVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNT 128 (221)
Q Consensus 60 Y~~~L~-i~~~~~r~VLD~GcG------~G~faa~L~~~---~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~ 128 (221)
|...|+ +. .+..+|||+||| +|+.+..++++ +. .|+++|.+ +|.. ....+-=...|. +.++.
T Consensus 206 Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a---~V~GVDiSp~m~~--~~~rI~fv~GDa-~dlpf 278 (419)
T 3sso_A 206 YDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRG---QIYGLDIMDKSHV--DELRIRTIQGDQ-NDAEF 278 (419)
T ss_dssp HHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTC---EEEEEESSCCGGG--CBTTEEEEECCT-TCHHH
T ss_pred HHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCC---EEEEEECCHHHhh--cCCCcEEEEecc-cccch
Confidence 666665 32 246899999999 67766666653 22 56888886 4531 111111123442 22221
Q ss_pred C------CCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh------------------hhHHHHHHHHHh
Q 027609 129 Y------PRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA------------------ETIVEVEDLVKS 184 (221)
Q Consensus 129 y------p~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~------------------~~~~~i~~i~~~ 184 (221)
. +++||+|+|.. .+++. ++..+|.|+.|+|||||++++.|.. .+++.+++++..
T Consensus 279 ~~~l~~~d~sFDlVisdg-sH~~~-d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~ 356 (419)
T 3sso_A 279 LDRIARRYGPFDIVIDDG-SHINA-HVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDA 356 (419)
T ss_dssp HHHHHHHHCCEEEEEECS-CCCHH-HHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHH
T ss_pred hhhhhcccCCccEEEECC-cccch-hHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHH
Confidence 1 38999999974 34455 8999999999999999999998643 247888899888
Q ss_pred cCCeE
Q 027609 185 LHWDV 189 (221)
Q Consensus 185 l~W~~ 189 (221)
++|..
T Consensus 357 l~~~~ 361 (419)
T 3sso_A 357 IQHQE 361 (419)
T ss_dssp HTGGG
T ss_pred hcccc
Confidence 88764
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-11 Score=104.04 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=70.3
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cc-cceeccccccC-CCCC-CccCee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GL-FGLYHDWCESF-NTYP-RTYDLL 136 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~~~~d~~e~f-~~yp-~sFDlV 136 (221)
+.-....+|||+|||+|.++..|++. |- ...|.++|.+ +|++.+.++ +. ..+..|.+.+- .++. .++|+|
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~-~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvV 151 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGP-RGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGL 151 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCT-TCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEE
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEE
Confidence 33445889999999999999999886 21 1246778876 577766554 22 22444433321 1234 899999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+|. +.|-. ++..++.|+.|+|||||.+++.+
T Consensus 152 f~d--~~~~~-~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 152 YAD--VAQPE-QAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEC--CCCTT-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEe--ccCCh-hHHHHHHHHHHhccCCCEEEEEE
Confidence 875 33333 78899999999999999999973
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.14 E-value=7.3e-11 Score=105.02 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=69.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cccc---eeccccccCCCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLFG---LYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl~~---~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
+..+|||+|||+|.++..+++.+.. +|+++|.+.+++.+.++ |+.+ +++.-.+.+ ++| ++||+|.|..+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~--~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEWM 114 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECCC
T ss_pred CCCEEEEecCccHHHHHHHHHCCCC--EEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhc-cCCCCcccEEEEeCc
Confidence 3678999999999999999988753 46777776677766654 4422 233212223 366 89999999854
Q ss_pred ccccc--ccHHHHHHHhhhhccCCeEEEE
Q 027609 142 FSTIK--KSLKAVVAEVDRILRPDGNLIL 168 (221)
Q Consensus 142 ~~h~~--~d~~~vL~EmdRVLRPGG~~ii 168 (221)
..++. .++..++.+++|+|||||.++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 43322 2788999999999999999984
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=105.12 Aligned_cols=113 Identities=10% Similarity=0.085 Sum_probs=74.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---eeccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LYHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..++++.- ...|+++|.+ .+++.+.++ |+.. +-...+..+.+++ ++||+|.|+-
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~np 300 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNP 300 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECC
T ss_pred CCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECC
Confidence 348999999999999999988731 1257888886 477766654 3321 2111122334566 8999999998
Q ss_pred ccccccc----cHHHHHHHhhhhccCCeEEEEEcCh--hhHHHHHHHHH
Q 027609 141 LFSTIKK----SLKAVVAEVDRILRPDGNLILRDDA--ETIVEVEDLVK 183 (221)
Q Consensus 141 v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d~~--~~~~~i~~i~~ 183 (221)
.|++... ....+|.++.|+|||||.+++.... .+...+++.+.
T Consensus 301 pfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg 349 (375)
T 4dcm_A 301 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG 349 (375)
T ss_dssp CC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred CcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence 8875321 3347899999999999999997432 23344444433
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.2e-11 Score=99.06 Aligned_cols=130 Identities=15% Similarity=0.128 Sum_probs=87.3
Q ss_pred CCeEEeecCcchHHHHHHhhC---CCeEEEeccCCCC-CCHHHHHHc----Ccc-c---e-eccccccCCCC-CCccCee
Q 027609 71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESP-DTLPIIYER----GLF-G---L-YHDWCESFNTY-PRTYDLL 136 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~---~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~---~-~~d~~e~f~~y-p~sFDlV 136 (221)
..+|||+|||+|.++..|++. +. .++.+|.+ ++++.+.++ |+. . + ..|..+.++.+ +++||+|
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V 133 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLV 133 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence 449999999999999999874 22 46888886 477766554 443 2 2 22333333345 4899999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEcCh------------hhHHHHHHHHHhcCCeEE--EeecCCCeeEEE
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA------------ETIVEVEDLVKSLHWDVR--MIYTNDNQGMLC 202 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~------------~~~~~i~~i~~~l~W~~~--~~~~~~~e~~l~ 202 (221)
.+..... +...++.++.|+|||||++++.+.. .....+.++...+++.-. ...-.-.+.+++
T Consensus 134 ~~d~~~~----~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~~ 209 (221)
T 3dr5_A 134 FGQVSPM----DLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTV 209 (221)
T ss_dssp EECCCTT----THHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTCEEE
T ss_pred EEcCcHH----HHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccchHHH
Confidence 9875433 4567899999999999999997542 123355666666666522 111223678999
Q ss_pred EEecc
Q 027609 203 VHKTY 207 (221)
Q Consensus 203 ~~K~~ 207 (221)
++|.+
T Consensus 210 ~~~~~ 214 (221)
T 3dr5_A 210 VTKAL 214 (221)
T ss_dssp EEECC
T ss_pred HHHHH
Confidence 99875
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-11 Score=97.26 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=70.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc---ccee-ccccccCCC--C-CCccCeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL---FGLY-HDWCESFNT--Y-PRTYDLLH 137 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl---~~~~-~d~~e~f~~--y-p~sFDlVh 137 (221)
...+|||+|||+|.++..+++++.. +++++|.+ .+++.+.++ |+ +..+ .|+.+.++. + +.+||+|.
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 4679999999999999998887643 57888886 577776654 33 1222 343331111 2 48999999
Q ss_pred eccccccccccHHHHHHHh--hhhccCCeEEEEEcCh
Q 027609 138 ADHLFSTIKKSLKAVVAEV--DRILRPDGNLILRDDA 172 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~Em--dRVLRPGG~~ii~d~~ 172 (221)
++..++ .. +...++.++ .|+|||||++++....
T Consensus 122 ~~~~~~-~~-~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 122 LDPPYA-KQ-EIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp ECCCGG-GC-CHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred ECCCCC-ch-hHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 987764 23 567777777 9999999999998654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=95.38 Aligned_cols=130 Identities=13% Similarity=0.081 Sum_probs=80.6
Q ss_pred CCCeEEeecCcchHHHHHHhhC--CCeEEEeccCCCC-C----CHHHHHHcCccc-eeccccccC-CCC-CCccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESP-D----TLPIIYERGLFG-LYHDWCESF-NTY-PRTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~--~v~vmnv~~~d~~-~----~l~~a~eRGl~~-~~~d~~e~f-~~y-p~sFDlVh~~ 139 (221)
...+|||+|||+|.++..|+++ +.. .++++|.+ . +++.+.++.-+. ...|..+.. .++ +++||+|.|+
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~--~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDG--LVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTC--EEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 4679999999999999999886 211 46788876 2 455555542222 233433211 123 3899999997
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcChh-----------hHHHHHHHHHhcCCeEEEe-e---cCCCeeEEEEE
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE-----------TIVEVEDLVKSLHWDVRMI-Y---TNDNQGMLCVH 204 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-----------~~~~i~~i~~~l~W~~~~~-~---~~~~e~~l~~~ 204 (221)
.. .++....++.++.|+|||||.++++-... +... .+++++..++.... . .....-+++++
T Consensus 155 ~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 155 VA---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp CC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEEEEECTTTSSSEEEEEEE
T ss_pred CC---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEEEEecCCccCCcEEEEEE
Confidence 44 12133566888999999999999963321 1222 35566677876532 2 12235566666
Q ss_pred e
Q 027609 205 K 205 (221)
Q Consensus 205 K 205 (221)
|
T Consensus 231 ~ 231 (233)
T 2ipx_A 231 Y 231 (233)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-10 Score=96.78 Aligned_cols=131 Identities=13% Similarity=0.085 Sum_probs=81.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHH----HHHcCccc---e-eccccccCCCC-----CCccCe
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPI----IYERGLFG---L-YHDWCESFNTY-----PRTYDL 135 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~----a~eRGl~~---~-~~d~~e~f~~y-----p~sFDl 135 (221)
..++|||+|||+|..+..|++.--....|+++|.+ ++++. +...|+.. + ..|..+.++.+ +++||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 46799999999999999998741001145666663 35443 44445532 2 23432322223 489999
Q ss_pred eeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh------------hhHHHHHHHHHhc----CCeEEEeecCCCee
Q 027609 136 LHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA------------ETIVEVEDLVKSL----HWDVRMIYTNDNQG 199 (221)
Q Consensus 136 Vh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~------------~~~~~i~~i~~~l----~W~~~~~~~~~~e~ 199 (221)
|.+.... .+...++.++.|+|||||++++.+.. +....++++.+.+ ++++.+.. -.++
T Consensus 140 V~~d~~~----~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp--~~dG 213 (242)
T 3r3h_A 140 IFIDADK----TNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLA--IADG 213 (242)
T ss_dssp EEEESCG----GGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEES--SSSC
T ss_pred EEEcCCh----HHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEE--ccCc
Confidence 9987542 25678999999999999999997532 1233455544444 34443332 2567
Q ss_pred EEEEEec
Q 027609 200 MLCVHKT 206 (221)
Q Consensus 200 ~l~~~K~ 206 (221)
+++++|+
T Consensus 214 ~~~~~k~ 220 (242)
T 3r3h_A 214 MFLVQPI 220 (242)
T ss_dssp EEEEEEC
T ss_pred eEEEEEc
Confidence 8888874
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.10 E-value=8.7e-11 Score=99.31 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=71.2
Q ss_pred CCCeEEeecCcchHHHHHHhhC--CCeEEEeccCCCC-CCHHHHHHc-------Cc------------------------
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESP-DTLPIIYER-------GL------------------------ 115 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~--~v~vmnv~~~d~~-~~l~~a~eR-------Gl------------------------ 115 (221)
...+|||+|||+|.++..|+.+ . ...+++++|.+ .+++.|.++ |+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 4678999999999999999876 2 13478999986 588877643 22
Q ss_pred ----cc-------------ee-ccccccCCCC------C-CccCeeeecccccccc--------ccHHHHHHHhhhhccC
Q 027609 116 ----FG-------------LY-HDWCESFNTY------P-RTYDLLHADHLFSTIK--------KSLKAVVAEVDRILRP 162 (221)
Q Consensus 116 ----~~-------------~~-~d~~e~f~~y------p-~sFDlVh~~~v~~h~~--------~d~~~vL~EmdRVLRP 162 (221)
+. .. +|..+ ++ + ++||+|.|+-.+.+.. +....++.++.|+|||
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 206 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFD---PRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA 206 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTC---GGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred hhhhhhhhccccccccccceeeccccc---ccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC
Confidence 11 22 33322 33 4 5899999986665432 1466899999999999
Q ss_pred CeEEEEEcCh
Q 027609 163 DGNLILRDDA 172 (221)
Q Consensus 163 GG~~ii~d~~ 172 (221)
||++++.+..
T Consensus 207 gG~l~~~~~~ 216 (250)
T 1o9g_A 207 HAVIAVTDRS 216 (250)
T ss_dssp TCEEEEEESS
T ss_pred CcEEEEeCcc
Confidence 9999997554
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.9e-11 Score=97.75 Aligned_cols=95 Identities=19% Similarity=0.106 Sum_probs=69.1
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCC--CccCeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYP--RTYDLLH 137 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp--~sFDlVh 137 (221)
.....+|||+|||+|.++..|++......+++.+|.+ ++++.+.++ |+.. . ..|..+ +++ ++||+|.
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~~~~~~fD~v~ 151 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTL---GYEPLAPYDRIY 151 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG---CCGGGCCEEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc---CCCCCCCeeEEE
Confidence 3446799999999999999998863100156788876 588877765 3322 1 223322 233 7899999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|..+++|+. .++.|+|||||.+++....
T Consensus 152 ~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 152 TTAAGPKIP-------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp ESSBBSSCC-------HHHHHTEEEEEEEEEEESS
T ss_pred ECCchHHHH-------HHHHHHcCCCcEEEEEECC
Confidence 999998877 2889999999999998765
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.9e-10 Score=95.01 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=81.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc-------Ccc---cee-ccccccC-----CCCC-C
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER-------GLF---GLY-HDWCESF-----NTYP-R 131 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR-------Gl~---~~~-~d~~e~f-----~~yp-~ 131 (221)
...+|||+|||+|.++..|+.+.- ..+++++|.+ ++++.+.++ |+. .++ .|..+.. ..++ +
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 467899999999999999988731 1367889986 588877765 221 122 2432211 1245 8
Q ss_pred ccCeeeecccccc----------------cc-ccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeE
Q 027609 132 TYDLLHADHLFST----------------IK-KSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 132 sFDlVh~~~v~~h----------------~~-~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~ 189 (221)
+||+|.|+--+.. .. .+...++.++.|+|||||.+++.-..+...++...++.- |..
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 9999999833321 11 157889999999999999999987777777777777663 654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-10 Score=99.16 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=68.6
Q ss_pred CCCCeEEeecCcchHHHHHHhhC--CCeEEEeccCCCC-CCHHHHHHcCcc-c-eeccccccCCCCC-CccCeeeecccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESP-DTLPIIYERGLF-G-LYHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~--~v~vmnv~~~d~~-~~l~~a~eRGl~-~-~~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
....+|||+|||+|.++..|++. +. +++++|.+ .+++.+.+++-. . ...|. +.+ +++ ++||+|.|..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~-~~~~~~fD~v~~~~~~ 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRL-PFSDTSMDAIIRIYAP 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCT-TSC-SBCTTCEEEEEEESCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcch-hhC-CCCCCceeEEEEeCCh
Confidence 35678999999999999999887 43 46888886 599999888521 1 22342 223 355 899999986442
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.++.|+.|+|||||.+++.+..
T Consensus 159 --------~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 159 --------CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp --------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred --------hhHHHHHHhcCCCcEEEEEEcC
Confidence 3589999999999999998754
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.4e-11 Score=101.01 Aligned_cols=140 Identities=11% Similarity=0.071 Sum_probs=99.8
Q ss_pred hhhhccc-CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc-e-eccccccCCCCC
Q 027609 59 SYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG-L-YHDWCESFNTYP 130 (221)
Q Consensus 59 ~Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~-~-~~d~~e~f~~yp 130 (221)
.|...++ + ....+|||+|||+|.+|..++...-.+ .+.++|.+ .|++++.++ |+.. + +.|..+. +.+
T Consensus 39 fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~--~~~ 113 (200)
T 3fzg_A 39 FYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD--VYK 113 (200)
T ss_dssp HHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH--HTT
T ss_pred HHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc--CCC
Confidence 3444443 3 237799999999999999997773333 67999997 599988876 3321 2 1232221 235
Q ss_pred CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh-----------hhHHHHHHHHHhcCCeEEEeecCCCee
Q 027609 131 RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-----------ETIVEVEDLVKSLHWDVRMIYTNDNQG 199 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-----------~~~~~i~~i~~~l~W~~~~~~~~~~e~ 199 (221)
.+||+|-+..++||+. +...++..+.+.|||||.||--++. .+....++.+.+=-|.+....- +.|-
T Consensus 114 ~~~DvVLa~k~LHlL~-~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~-~nEl 191 (200)
T 3fzg_A 114 GTYDVVFLLKMLPVLK-QQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVI-GNEL 191 (200)
T ss_dssp SEEEEEEEETCHHHHH-HTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEE-TTEE
T ss_pred CCcChhhHhhHHHhhh-hhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeee-CceE
Confidence 9999999999999994 8889999999999999999998731 2356777778777887754322 3455
Q ss_pred EEEEEe
Q 027609 200 MLCVHK 205 (221)
Q Consensus 200 ~l~~~K 205 (221)
+.+.+|
T Consensus 192 ~y~~~~ 197 (200)
T 3fzg_A 192 VYITSG 197 (200)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 555554
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-10 Score=98.14 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=81.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc----eeccccccCCCCC-CccCee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG----LYHDWCESFNTYP-RTYDLL 136 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~----~~~d~~e~f~~yp-~sFDlV 136 (221)
.....+|||+|||+|.++..|+++ +-. .+++.+|.+ ++++.+.++ |+.. ...|..+ .++ ++||+|
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~D~V 185 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE---GFDEKDVDAL 185 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG---CCSCCSEEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH---cccCCccCEE
Confidence 344679999999999999999886 311 257888886 588877765 4411 2234433 255 889999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeE
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~ 189 (221)
.++ .+ ++..+|.++.|+|||||.+++.+.. ....++.+.++...|..
T Consensus 186 ~~~-----~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~ 233 (277)
T 1o54_A 186 FLD-----VP-DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR 233 (277)
T ss_dssp EEC-----CS-CGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred EEC-----Cc-CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 984 34 6789999999999999999999874 35666666677777764
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-10 Score=102.13 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=79.4
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCCCCccCeeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTYPRTYDLLHA 138 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~yp~sFDlVh~ 138 (221)
......+|||+|||+|+++..|++.--....|+++|.+ .+++.+.++ |+.+ ++ .|. ..++.++++||+|.|
T Consensus 115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Il~ 193 (315)
T 1ixk_A 115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS-LHIGELNVEFDKILL 193 (315)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG-GGGGGGCCCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh-hhcccccccCCEEEE
Confidence 34456799999999999999998741011146888886 477777665 5432 22 342 234334589999998
Q ss_pred ccc------cccccc---------------cHHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHhcCCeE
Q 027609 139 DHL------FSTIKK---------------SLKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 139 ~~v------~~h~~~---------------d~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~l~W~~ 189 (221)
+-- +.+-++ ....+|.++.|+|||||.++++++. +..+.++.+++...++.
T Consensus 194 d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~ 269 (315)
T 1ixk_A 194 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVEL 269 (315)
T ss_dssp ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred eCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEE
Confidence 522 222110 1158999999999999999998653 33455677777655543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-10 Score=99.62 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=75.7
Q ss_pred CCeEEeecCcchHHHHHHhhC----CCeEEEeccCCCC-CCHHHHHHcC-ccc-eecccccc--CCCCC-CccCeeeecc
Q 027609 71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESP-DTLPIIYERG-LFG-LYHDWCES--FNTYP-RTYDLLHADH 140 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~----~v~vmnv~~~d~~-~~l~~a~eRG-l~~-~~~d~~e~--f~~yp-~sFDlVh~~~ 140 (221)
..+|||+|||+|.+++.|++. +- ...|+++|.+ .+++.+...+ -+. ...|..+. ++..+ .+||+|++..
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~-~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGI-DCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTC-CCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCC-CCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 469999999999999999875 11 1246788875 4766654221 122 23453331 22223 4799999875
Q ss_pred ccccccccHHHHHHHhhh-hccCCeEEEEEcChhh-----HHHHHHHHHhc--CCeE
Q 027609 141 LFSTIKKSLKAVVAEVDR-ILRPDGNLILRDDAET-----IVEVEDLVKSL--HWDV 189 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdR-VLRPGG~~ii~d~~~~-----~~~i~~i~~~l--~W~~ 189 (221)
. | . +...+|.|+.| +|||||++++.|..+. ...+.++++.. +++.
T Consensus 161 ~--~-~-~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 161 A--H-A-NTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp S--C-S-SHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred c--h-H-hHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 4 3 2 67789999998 9999999999875332 23567777766 4554
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-10 Score=94.99 Aligned_cols=107 Identities=11% Similarity=0.179 Sum_probs=77.0
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCC-C-CccCeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTY-P-RTYDLLH 137 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~y-p-~sFDlVh 137 (221)
....+|||+|||+|.++..|++++. +++.+|.+ ++++.+.++ |+.. . ..|..+ .+ + ++||+|.
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v~ 163 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKD---AEVPEGIFHAAF 163 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTT---SCCCTTCBSEEE
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhh---cccCCCcccEEE
Confidence 3467999999999999999988732 57888876 588877765 3311 2 234322 23 5 7899999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCe
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWD 188 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~ 188 (221)
++ .+ ++..++.++.|+|||||.+++.... ....++...++.. |.
T Consensus 164 ~~-----~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~ 208 (248)
T 2yvl_A 164 VD-----VR-EPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FG 208 (248)
T ss_dssp EC-----SS-CGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred EC-----Cc-CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence 84 34 6788999999999999999999874 3455555555544 44
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=97.35 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=84.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCC-------------
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFN------------- 127 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~------------- 127 (221)
...+|||+|||+|.++..|++..-...+++.+|.+ .+++.+.++ |+.+ . ..|..+.++
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 46799999999999999998762101256788875 477777665 4422 1 122222111
Q ss_pred CC--C-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh------------hhHHHHHH----HHHhcCCe
Q 027609 128 TY--P-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA------------ETIVEVED----LVKSLHWD 188 (221)
Q Consensus 128 ~y--p-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~------------~~~~~i~~----i~~~l~W~ 188 (221)
.| + ++||+|.+..... +...++.++.|+|||||.+++.+.. .....+++ +...-++.
T Consensus 140 ~f~~~~~~fD~I~~~~~~~----~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADKE----NYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVD 215 (239)
T ss_dssp TTCCSTTCEEEEEECSCGG----GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEE
T ss_pred cccCCCCCcCEEEEeCCHH----HHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCeE
Confidence 12 2 6899999885433 5568899999999999999998621 11222333 33444566
Q ss_pred EEEeecCCCeeEEEEEecc
Q 027609 189 VRMIYTNDNQGMLCVHKTY 207 (221)
Q Consensus 189 ~~~~~~~~~e~~l~~~K~~ 207 (221)
+....- .+.+.+++|.+
T Consensus 216 ~~~~p~--~~g~~~~~~~~ 232 (239)
T 2hnk_A 216 VSLVPI--ADGVSLVRKRL 232 (239)
T ss_dssp EEEECS--TTCEEEEEECC
T ss_pred EEEEEc--CCceEeeeehh
Confidence 554322 35688888875
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-10 Score=109.73 Aligned_cols=99 Identities=8% Similarity=0.047 Sum_probs=71.0
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc-----------Cc----ccee-ccccccCCC
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER-----------GL----FGLY-HDWCESFNT 128 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR-----------Gl----~~~~-~d~~e~f~~ 128 (221)
......+|||+|||+|.++..++.+ +.. .++++|.+ .++++|.+. |+ +.++ .|..+ + +
T Consensus 170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g~~--kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~-l-p 245 (438)
T 3uwp_A 170 KMTDDDLFVDLGSGVGQVVLQVAAATNCK--HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS-E-E 245 (438)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHCCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTS-H-H
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccC-C-c
Confidence 3445788999999999999888754 543 47899987 477777642 43 2222 34222 1 2
Q ss_pred CC---CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 129 YP---RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 129 yp---~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
|+ .+||+|.|+..+ +.+ +....|.|+.|+|||||.||+.+.
T Consensus 246 ~~d~~~~aDVVf~Nn~~-F~p-dl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 246 WRERIANTSVIFVNNFA-FGP-EVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp HHHHHHTCSEEEECCTT-CCH-HHHHHHHHHHTTSCTTCEEEESSC
T ss_pred cccccCCccEEEEcccc-cCc-hHHHHHHHHHHcCCCCcEEEEeec
Confidence 33 479999998654 345 889999999999999999999964
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-10 Score=97.31 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=70.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc---ce-eccccccCCCC--CCccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF---GL-YHDWCESFNTY--PRTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~---~~-~~d~~e~f~~y--p~sFDlVh~ 138 (221)
...+|||+|||+|.++..|++..- ..+++.+|.+ .+++.+.++ |+. .. ..|..+.++.. +++||+|.+
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 467999999999999999988621 1257888886 588877776 542 22 23433311222 478999999
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+...+ +...+|.++.|+|||||.+++.+.
T Consensus 133 ~~~~~----~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 133 DAAKG----QYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EGGGS----CHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CCCHH----HHHHHHHHHHHHcCCCeEEEEEcC
Confidence 76543 677999999999999999999864
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.9e-10 Score=96.09 Aligned_cols=110 Identities=18% Similarity=0.230 Sum_probs=77.1
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC---CCeEEEeccCCCC-CCHHHHHHc-----C-c---cce-eccccccCCCCC-Cc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESP-DTLPIIYER-----G-L---FGL-YHDWCESFNTYP-RT 132 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~---~v~vmnv~~~d~~-~~l~~a~eR-----G-l---~~~-~~d~~e~f~~yp-~s 132 (221)
.....+|||+|||+|.++.+|++. +. +++++|.+ ++++.+.++ | + +.. ..|..+ . +++ ++
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~-~-~~~~~~ 171 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD-S-ELPDGS 171 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG-C-CCCTTC
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh-c-CCCCCc
Confidence 345679999999999999999875 22 56888886 588877765 4 1 112 234333 2 355 89
Q ss_pred cCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHh-cCCe
Q 027609 133 YDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKS-LHWD 188 (221)
Q Consensus 133 FDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~-l~W~ 188 (221)
||+|.++ .. ++..+|.++.|+|||||.+++.... +.+.++...++. .+|.
T Consensus 172 ~D~v~~~-----~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 172 VDRAVLD-----ML-APWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 223 (280)
T ss_dssp EEEEEEE-----SS-CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred eeEEEEC-----Cc-CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence 9999984 44 6779999999999999999998765 334444444444 5554
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-10 Score=94.17 Aligned_cols=97 Identities=19% Similarity=0.066 Sum_probs=67.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCCCCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~yp~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|++.--...+++.+|.+ .+++.+.++ |+.. .+ .|..+.++..++ ||+|.++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 35789999999999999998761101256888886 577777654 4322 22 343332233347 99999873
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
. .. +...++.++.|+|||||++++.+.
T Consensus 135 ~---~~-~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 135 D---VF-NGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp T---TS-CHHHHHHHHGGGEEEEEEEEEESS
T ss_pred C---hh-hhHHHHHHHHHhcCCCeEEEEECc
Confidence 2 22 678999999999999999999753
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.04 E-value=4.4e-10 Score=101.00 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=77.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc----cee-ccccccCCCC----CCccCe
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF----GLY-HDWCESFNTY----PRTYDL 135 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~----~~~-~d~~e~f~~y----p~sFDl 135 (221)
+..+|||+|||+|+|+..++..+. .|+.+|.+ .+++.+.++ |+. ..+ .|..+ +... .++||+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~-~l~~~~~~~~~fD~ 228 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMK-FIQREERRGSTYDI 228 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHH-HHHHHHHHTCCBSE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHH-HHHHHHhcCCCceE
Confidence 456899999999999999999875 57899987 488877665 432 122 23211 2211 368999
Q ss_pred eeecc----------ccccccccHHHHHHHhhhhccCCeEEEEEcCh-------hhHHHHHHHHHhcCCeEE
Q 027609 136 LHADH----------LFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-------ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 136 Vh~~~----------v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-------~~~~~i~~i~~~l~W~~~ 190 (221)
|.++- ++.+.. +...++.++.|+|||||++++.... .+.+.+++.++....++.
T Consensus 229 Ii~dPP~~~~~~~~~~~~~~~-~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 229 ILTDPPKFGRGTHGEVWQLFD-HLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp EEECCCSEEECTTCCEEEHHH-HHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred EEECCccccCCchHHHHHHHH-HHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 99842 222233 6789999999999999997776421 123334444556666654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-10 Score=102.57 Aligned_cols=96 Identities=16% Similarity=0.046 Sum_probs=69.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCCCccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp~sFDlVh~~~ 140 (221)
....+|||+|||+|.++..|++++....+|+++|.+ ++++.+.++ |+.+ . ..|..+ ..+.+++||+|.|..
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~-~~~~~~~fD~Iv~~~ 152 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY-GVPEFSPYDVIFVTV 152 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CCGGGCCEEEEEECS
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhh-ccccCCCeEEEEEcC
Confidence 346799999999999999998864321246888876 588877766 5433 2 234322 222238999999999
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+++|+. .++.|+|||||.+++....
T Consensus 153 ~~~~~~-------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 153 GVDEVP-------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp BBSCCC-------HHHHHHEEEEEEEEEEBCB
T ss_pred CHHHHH-------HHHHHhcCCCcEEEEEECC
Confidence 998876 4778999999999998654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.5e-10 Score=92.79 Aligned_cols=131 Identities=18% Similarity=0.095 Sum_probs=83.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc---cee-ccccccCCCCC-----CccCe
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF---GLY-HDWCESFNTYP-----RTYDL 135 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~---~~~-~d~~e~f~~yp-----~sFDl 135 (221)
...+|||+|||+|.++..|++.--...+++.+|.+ .+++.+.++ |+. ..+ .|..+.++.++ ++||+
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 46799999999999999998851101256888875 477777655 442 122 23222111121 68999
Q ss_pred eeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh------------hhHHHHHHHH----HhcCCeEEEeecCCCee
Q 027609 136 LHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA------------ETIVEVEDLV----KSLHWDVRMIYTNDNQG 199 (221)
Q Consensus 136 Vh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~------------~~~~~i~~i~----~~l~W~~~~~~~~~~e~ 199 (221)
|.++.... +...++.++.|+|||||.+++.+.. +....++++. ..-++.+.+... .+.
T Consensus 149 v~~d~~~~----~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~--~dG 222 (229)
T 2avd_A 149 AVVDADKE----NCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL--GDG 222 (229)
T ss_dssp EEECSCST----THHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS--TTC
T ss_pred EEECCCHH----HHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEec--CCc
Confidence 99975422 5678999999999999999996532 2233344433 334455544322 457
Q ss_pred EEEEEec
Q 027609 200 MLCVHKT 206 (221)
Q Consensus 200 ~l~~~K~ 206 (221)
+++++|.
T Consensus 223 l~~~~k~ 229 (229)
T 2avd_A 223 LTLAFKI 229 (229)
T ss_dssp EEEEEEC
T ss_pred eEEEEEC
Confidence 8888873
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-10 Score=108.08 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=72.0
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Ccc---cee-ccccccCCCCCCccCeeeec
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLF---GLY-HDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl~---~~~-~d~~e~f~~yp~sFDlVh~~ 139 (221)
.....+|||+|||+|.++..+++.+.. .|+++|.+.+++.|.++ |+. .++ .|+.+ + ++|.+||+|.|.
T Consensus 156 ~~~~~~VLDiGcGtG~la~~la~~~~~--~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~ 231 (480)
T 3b3j_A 156 DFKDKIVLDVGCGSGILSFFAAQAGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISE 231 (480)
T ss_dssp GTTTCEEEEESCSTTHHHHHHHHTTCS--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECC
T ss_pred hcCCCEEEEecCcccHHHHHHHHcCCC--EEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEe
Confidence 345679999999999999999987642 46778876566665543 552 222 34322 2 356899999998
Q ss_pred cccccccc-cHHHHHHHhhhhccCCeEEEEE
Q 027609 140 HLFSTIKK-SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 140 ~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.++.|+.. +....+.++.|+|||||.+++.
T Consensus 232 ~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 232 PMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred CchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 87777653 5677888999999999999854
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-10 Score=97.73 Aligned_cols=93 Identities=18% Similarity=0.219 Sum_probs=67.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccce---eccccccCCCCC--CccCeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGL---YHDWCESFNTYP--RTYDLLH 137 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~---~~d~~e~f~~yp--~sFDlVh 137 (221)
.....+|||+|||+|.++..|++... .+++.+|.+ .+++.+.++ |+..+ ..|. ..+++ ..||+|.
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~Ii 163 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG---SKGFPPKAPYDVII 163 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGGCCEEEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc---ccCCCCCCCccEEE
Confidence 34467999999999999999988642 246778875 577777665 33221 2232 23455 4599999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+..+++++. + ++.|+|||||.+++....
T Consensus 164 ~~~~~~~~~-~------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 164 VTAGAPKIP-E------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp ECSBBSSCC-H------HHHHTEEEEEEEEEEECS
T ss_pred ECCcHHHHH-H------HHHHhcCCCcEEEEEEec
Confidence 999988777 2 788999999999998764
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.5e-10 Score=96.62 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=85.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc-----Cc-----------ccee-ccccccCCCCCC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER-----GL-----------FGLY-HDWCESFNTYPR 131 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR-----Gl-----------~~~~-~d~~e~f~~yp~ 131 (221)
..++|||+|||+|+++..+++++. .+++.+|.+ .+++.+.++ |+ +.++ .|..+.+.. ++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 468999999999999999998853 257888876 588888776 22 1111 231111112 68
Q ss_pred ccCeeeeccccccccc--c--HHHHHHHhhhhccCCeEEEEEcC-----hhhHHHHHHHHHhcCCeEEEee-----cCCC
Q 027609 132 TYDLLHADHLFSTIKK--S--LKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMIY-----TNDN 197 (221)
Q Consensus 132 sFDlVh~~~v~~h~~~--d--~~~vL~EmdRVLRPGG~~ii~d~-----~~~~~~i~~i~~~l~W~~~~~~-----~~~~ 197 (221)
+||+|.++... ++.. . ...++.++.|+|||||.+++... .+....+.+.++..--.+.... -.+.
T Consensus 152 ~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~ 230 (281)
T 1mjf_A 152 GFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASP 230 (281)
T ss_dssp CEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSS
T ss_pred CeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCce
Confidence 89999997443 2221 1 26789999999999999999742 2334445444544433333221 1345
Q ss_pred eeEEEEEec
Q 027609 198 QGMLCVHKT 206 (221)
Q Consensus 198 e~~l~~~K~ 206 (221)
-.+++|.|.
T Consensus 231 ~~~~~as~~ 239 (281)
T 1mjf_A 231 WAFLVGVKG 239 (281)
T ss_dssp EEEEEEEES
T ss_pred EEEEEeeCC
Confidence 778999987
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-10 Score=95.42 Aligned_cols=131 Identities=14% Similarity=0.132 Sum_probs=83.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCC---C--CccCe
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTY---P--RTYDL 135 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~y---p--~sFDl 135 (221)
..++|||+|||+|.++..|++.--....++.+|.+ ++++.+.++ |+.. . ..|..+.++.+ + ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 35799999999999999998861001256788876 477777654 4422 2 22322212212 1 78999
Q ss_pred eeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh------------hhHHHHHHHHHhc----CCeEEEeecCCCee
Q 027609 136 LHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA------------ETIVEVEDLVKSL----HWDVRMIYTNDNQG 199 (221)
Q Consensus 136 Vh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~------------~~~~~i~~i~~~l----~W~~~~~~~~~~e~ 199 (221)
|.+.... . +...++.++.|+|||||++++.+.. +....++++...+ ++.+.+... .+.
T Consensus 152 V~~d~~~---~-~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~--~dG 225 (232)
T 3cbg_A 152 IFIDADK---R-NYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPL--GDG 225 (232)
T ss_dssp EEECSCG---G-GHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECS--BTC
T ss_pred EEECCCH---H-HHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEc--CCe
Confidence 9987542 2 6678999999999999999997532 2234445444433 455443322 356
Q ss_pred EEEEEec
Q 027609 200 MLCVHKT 206 (221)
Q Consensus 200 ~l~~~K~ 206 (221)
+.+++|.
T Consensus 226 ~~~~~~~ 232 (232)
T 3cbg_A 226 MTLALKK 232 (232)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8888874
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-10 Score=100.87 Aligned_cols=98 Identities=13% Similarity=0.058 Sum_probs=65.8
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCc-----------------cce-eccccccCC
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGL-----------------FGL-YHDWCESFN 127 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl-----------------~~~-~~d~~e~f~ 127 (221)
.....+|||+|||+|.++..|+.. +.. ..++++|.+ .+++.+.++.- +.. ..|..+...
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~ 181 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 181 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence 345779999999999999999886 321 146788875 47877766421 112 234433222
Q ss_pred CCC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 128 TYP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 128 ~yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+++ ++||+|.++. . ++..++.++.|+|||||.+++....
T Consensus 182 ~~~~~~fD~V~~~~-----~-~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 182 DIKSLTFDAVALDM-----L-NPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ------EEEEEECS-----S-STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred ccCCCCeeEEEECC-----C-CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 456 7899999862 3 4556899999999999999988654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-09 Score=94.56 Aligned_cols=136 Identities=17% Similarity=0.148 Sum_probs=87.3
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc------Cc----cce-eccccccCCCCCCccCee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER------GL----FGL-YHDWCESFNTYPRTYDLL 136 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR------Gl----~~~-~~d~~e~f~~yp~sFDlV 136 (221)
..++|||+|||+|+++..++++ ++. .++.+|.+ +++++++++ ++ +.+ ..|..+.+...+++||+|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVK--KATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCS--EEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCc--eEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 4689999999999999999987 443 46777775 588888775 22 112 223221122224899999
Q ss_pred eeccccccccc---cHHHHHHHhhhhccCCeEEEEEcCh-----hhHHHHHHHHHhcCCeEEEee----c--CCCeeEEE
Q 027609 137 HADHLFSTIKK---SLKAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMIY----T--NDNQGMLC 202 (221)
Q Consensus 137 h~~~v~~h~~~---d~~~vL~EmdRVLRPGG~~ii~d~~-----~~~~~i~~i~~~l~W~~~~~~----~--~~~e~~l~ 202 (221)
.++......+. ....++.++.|+|||||.+++.... +....+.+.+++.--.+.... + .+.-.+++
T Consensus 153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~ 232 (275)
T 1iy9_A 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTI 232 (275)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEE
Confidence 99743321110 1268999999999999999998533 234445445555533333322 1 34567889
Q ss_pred EEecc
Q 027609 203 VHKTY 207 (221)
Q Consensus 203 ~~K~~ 207 (221)
|.|++
T Consensus 233 ask~~ 237 (275)
T 1iy9_A 233 GSKKY 237 (275)
T ss_dssp EESSC
T ss_pred eeCCC
Confidence 99874
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=88.75 Aligned_cols=111 Identities=16% Similarity=0.048 Sum_probs=75.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-cce-eccccccCCCCCCccCeeeecccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-FGL-YHDWCESFNTYPRTYDLLHADHLFSTIK 146 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-~~~-~~d~~e~f~~yp~sFDlVh~~~v~~h~~ 146 (221)
...+|||+|||+|.++..|+.++.. .++++|.+ .+++.+.++-- +.. ..|.. .+|++||+|.|+..++|+.
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~----~~~~~~D~v~~~~p~~~~~ 124 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCGGVNFMVADVS----EISGKYDTWIMNPPFGSVV 124 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCTTSEEEECCGG----GCCCCEEEEEECCCC----
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhcCCCEEEECcHH----HCCCCeeEEEECCCchhcc
Confidence 4679999999999999999988642 47888886 58998888731 222 23322 2468999999999998886
Q ss_pred c-cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE
Q 027609 147 K-SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 147 ~-d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
. ....++.++.|+| |+.+++. .....+.+.+.+.... ++.
T Consensus 125 ~~~~~~~l~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~g-~~~ 165 (200)
T 1ne2_A 125 KHSDRAFIDKAFETS--MWIYSIG-NAKARDFLRREFSARG-DVF 165 (200)
T ss_dssp ---CHHHHHHHHHHE--EEEEEEE-EGGGHHHHHHHHHHHE-EEE
T ss_pred CchhHHHHHHHHHhc--CcEEEEE-cCchHHHHHHHHHHCC-CEE
Confidence 4 2357899999999 5644444 3445667777776665 543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.7e-10 Score=105.71 Aligned_cols=98 Identities=13% Similarity=0.070 Sum_probs=68.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHH-------HHc----Cc--cc--eeccccccCC---
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPII-------YER----GL--FG--LYHDWCESFN--- 127 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a-------~eR----Gl--~~--~~~d~~e~f~--- 127 (221)
.....+|||+|||+|.++..|+.. +.. .++++|.+ .+++.| .++ |+ .. +++ +..+.
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~--~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~--gD~~~~~~ 315 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCA--LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL--KKSFVDNN 315 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE--SSCSTTCH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE--cCcccccc
Confidence 345789999999999999999885 432 46788876 366655 443 42 12 222 11221
Q ss_pred CC---CCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 128 TY---PRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 128 ~y---p~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+| ..+||+|.++.++ +.+ ++..+|.|+.|+|||||.+++.+.
T Consensus 316 ~~~~~~~~FDvIvvn~~l-~~~-d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 316 RVAELIPQCDVILVNNFL-FDE-DLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp HHHHHGGGCSEEEECCTT-CCH-HHHHHHHHHHTTCCTTCEEEESSC
T ss_pred ccccccCCCCEEEEeCcc-ccc-cHHHHHHHHHHhCCCCeEEEEeec
Confidence 12 3789999997555 234 788899999999999999999863
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-09 Score=94.90 Aligned_cols=135 Identities=10% Similarity=0.032 Sum_probs=84.7
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcC------c----cce-eccccccCCCCCCccCee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERG------L----FGL-YHDWCESFNTYPRTYDLL 136 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRG------l----~~~-~~d~~e~f~~yp~sFDlV 136 (221)
...+|||+|||+|+++..++++ +. .+++.+|.+ .+++.+.++- + +.+ ..|..+.+...+++||+|
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 167 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 167 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEE
Confidence 3589999999999999999987 43 257888876 5888887651 1 112 223222122234899999
Q ss_pred eecccccc-ccc----cHHHHHHHhhhhccCCeEEEEEcChh-----hHHHHHHHHHhcCCeEEEee------cCCCeeE
Q 027609 137 HADHLFST-IKK----SLKAVVAEVDRILRPDGNLILRDDAE-----TIVEVEDLVKSLHWDVRMIY------TNDNQGM 200 (221)
Q Consensus 137 h~~~v~~h-~~~----d~~~vL~EmdRVLRPGG~~ii~d~~~-----~~~~i~~i~~~l~W~~~~~~------~~~~e~~ 200 (221)
.++. ..+ ... ....++.++.|+|||||.+++....+ ....+.+.+++.--.+.... ..+.-.+
T Consensus 168 i~d~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f 246 (296)
T 1inl_A 168 IIDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSY 246 (296)
T ss_dssp EEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEE
T ss_pred EEcC-CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEE
Confidence 9863 323 110 12689999999999999999985432 23344334444433443322 1345678
Q ss_pred EEEEecc
Q 027609 201 LCVHKTY 207 (221)
Q Consensus 201 l~~~K~~ 207 (221)
++|.|++
T Consensus 247 ~~as~~~ 253 (296)
T 1inl_A 247 TFASKGI 253 (296)
T ss_dssp EEEESSC
T ss_pred EEecCCC
Confidence 9999974
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4.7e-10 Score=101.18 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=69.7
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc------Cc----cc-eeccccccCCCCC-CccCe
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER------GL----FG-LYHDWCESFNTYP-RTYDL 135 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR------Gl----~~-~~~d~~e~f~~yp-~sFDl 135 (221)
...++|||+|||+|.++..|+++.- ..+++.+|.+ .+++++.++ |+ +. ...|..+.+..++ ++||+
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 3468999999999999999998731 2257888886 588888775 22 11 2234332222345 89999
Q ss_pred eeeccccc-ccccc--HHHHHHHhhhhccCCeEEEEE
Q 027609 136 LHADHLFS-TIKKS--LKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 136 Vh~~~v~~-h~~~d--~~~vL~EmdRVLRPGG~~ii~ 169 (221)
|.++.... +...+ ...++.++.|+|||||.+++.
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99964321 11111 368999999999999999997
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-09 Score=93.19 Aligned_cols=125 Identities=12% Similarity=0.046 Sum_probs=80.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC------c----ccee-ccccccCCCCCCccCeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG------L----FGLY-HDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG------l----~~~~-~d~~e~f~~yp~sFDlVh 137 (221)
..++|||+|||+|+++..+++++ ..++.+|.+ ++++.+.++- + +.+. .|. +. |.++||+|.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~---~~-~~~~fD~Ii 144 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL---DL-DIKKYDLIF 144 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGG---GS-CCCCEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechH---HH-HHhhCCEEE
Confidence 46899999999999999998884 367788875 4777776541 1 1112 231 11 238899999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcChh-----hHHHHHHHHHhcCCeEEEeec----CCCeeEEEEEecc
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE-----TIVEVEDLVKSLHWDVRMIYT----NDNQGMLCVHKTY 207 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-----~~~~i~~i~~~l~W~~~~~~~----~~~e~~l~~~K~~ 207 (221)
++ .. +|..++.++.|+|||||.+++....+ ....+.+.+++.--.+..... .+.-.+++|.|.+
T Consensus 145 ~d-----~~-dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~vP~~g~~~~~~as~~~ 217 (262)
T 2cmg_A 145 CL-----QE-PDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLRILSNKGYIYASFKT 217 (262)
T ss_dssp ES-----SC-CCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEECCTTCTTCCEEEEEEESSC
T ss_pred EC-----CC-ChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEEEccCCCcccEEEEeeCCC
Confidence 87 23 56679999999999999999974332 233333334443222222221 2345678898874
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=7.8e-10 Score=98.19 Aligned_cols=136 Identities=15% Similarity=0.096 Sum_probs=86.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC-------c----cce-eccccccCCCCCCccCee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG-------L----FGL-YHDWCESFNTYPRTYDLL 136 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG-------l----~~~-~~d~~e~f~~yp~sFDlV 136 (221)
..++|||+|||+|+++..|+++.- ..+++.+|.+ .+++.+.++- + +.+ ..|..+.+...+++||+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 468999999999999999998731 2257888876 5888887651 1 111 223221111125899999
Q ss_pred eeccccccc---c--c--cHHHHHHHhhhhccCCeEEEEEcCh------hhHHHHHHHHHhcCCeEEEee----c-CCCe
Q 027609 137 HADHLFSTI---K--K--SLKAVVAEVDRILRPDGNLILRDDA------ETIVEVEDLVKSLHWDVRMIY----T-NDNQ 198 (221)
Q Consensus 137 h~~~v~~h~---~--~--d~~~vL~EmdRVLRPGG~~ii~d~~------~~~~~i~~i~~~l~W~~~~~~----~-~~~e 198 (221)
.++... |. . . ....++.++.|+|||||.+++.... +....+.+.+++.--.+.... + .+.-
T Consensus 156 i~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~ 234 (314)
T 1uir_A 156 IIDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNF 234 (314)
T ss_dssp EEECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEE
T ss_pred EECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeE
Confidence 998544 33 1 0 1368999999999999999987322 234555555555533333221 1 2345
Q ss_pred eEEEEEecc
Q 027609 199 GMLCVHKTY 207 (221)
Q Consensus 199 ~~l~~~K~~ 207 (221)
.+++|.|.+
T Consensus 235 ~~~~as~~~ 243 (314)
T 1uir_A 235 GFLLASDAF 243 (314)
T ss_dssp EEEEEESSS
T ss_pred EEEEEECCC
Confidence 688999873
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-10 Score=94.54 Aligned_cols=94 Identities=16% Similarity=0.122 Sum_probs=66.3
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cc-------cc-eeccccccCCCCC-Ccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GL-------FG-LYHDWCESFNTYP-RTY 133 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl-------~~-~~~d~~e~f~~yp-~sF 133 (221)
....+|||+|||+|.++..|++. +.. .+++++|.+ .+++.+.++ |+ +. ...|..+ . +.+ ++|
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~f 152 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM-G-YAEEAPY 152 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG-C-CGGGCCE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc-C-cccCCCc
Confidence 34679999999999999999875 211 156888876 477777654 11 11 2234322 1 223 789
Q ss_pred CeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 134 DLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 134 DlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|+|++...+.++. .++.|+|||||.+++....
T Consensus 153 D~i~~~~~~~~~~-------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 153 DAIHVGAAAPVVP-------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEEECSBBSSCC-------HHHHHTEEEEEEEEEEESC
T ss_pred CEEEECCchHHHH-------HHHHHhcCCCcEEEEEEec
Confidence 9999998887654 4788999999999998654
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-09 Score=96.40 Aligned_cols=136 Identities=20% Similarity=0.227 Sum_probs=83.7
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc------Cc----ccee-ccccccCCCCCCccCee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER------GL----FGLY-HDWCESFNTYPRTYDLL 136 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR------Gl----~~~~-~d~~e~f~~yp~sFDlV 136 (221)
...++|||+|||+|.++..|++++- ..+++.+|.+ .+++++.++ |+ +.++ .|..+.+...+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 3468999999999999999998741 2257888876 588888765 22 1122 23211112224899999
Q ss_pred eeccccccccc----cHHHHHHHhhhhccCCeEEEEEcCh-----hhHHHHHHHHHhcCCeEEEee------cCCCeeEE
Q 027609 137 HADHLFSTIKK----SLKAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMIY------TNDNQGML 201 (221)
Q Consensus 137 h~~~v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d~~-----~~~~~i~~i~~~l~W~~~~~~------~~~~e~~l 201 (221)
.++... ++.. ....++.++.|+|||||.+++.... +....+.+.++++-=.+.... ..+.-.++
T Consensus 173 i~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~ 251 (304)
T 2o07_A 173 ITDSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFM 251 (304)
T ss_dssp EEECC------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEE
T ss_pred EECCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCcceEEE
Confidence 997433 2221 1257899999999999999997522 234455444554433332221 12345788
Q ss_pred EEEec
Q 027609 202 CVHKT 206 (221)
Q Consensus 202 ~~~K~ 206 (221)
+|.|.
T Consensus 252 ~as~~ 256 (304)
T 2o07_A 252 LCSKN 256 (304)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 89886
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=96.18 Aligned_cols=135 Identities=13% Similarity=0.054 Sum_probs=86.8
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc--ccee-ccccccCCCCCCccCeeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL--FGLY-HDWCESFNTYPRTYDLLHA 138 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl--~~~~-~d~~e~f~~yp~sFDlVh~ 138 (221)
.+....+|||+|||+|+++..++........++++|.+ ++++.|.++ |+ +... .|. ..+++...+||+|.|
T Consensus 200 ~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~-~~~~~~~~~~D~Ii~ 278 (354)
T 3tma_A 200 DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADA-RHLPRFFPEVDRILA 278 (354)
T ss_dssp TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCG-GGGGGTCCCCSEEEE
T ss_pred CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCCh-hhCccccCCCCEEEE
Confidence 44557899999999999999887753000146788886 588777665 43 2222 343 224322377999999
Q ss_pred cccccc-------ccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEe---ecCC-CeeEEEEEe
Q 027609 139 DHLFST-------IKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMI---YTND-NQGMLCVHK 205 (221)
Q Consensus 139 ~~v~~h-------~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~---~~~~-~e~~l~~~K 205 (221)
+--+.. +......++.++.|+|||||.+++...++. -++.+.+ ..|+.... .+.. .-.+++++|
T Consensus 279 npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~--~~~~~~~-~g~~~~~~~~l~~g~l~~~i~vl~r 353 (354)
T 3tma_A 279 NPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPA--LLKRALP-PGFALRHARVVEQGGVYPRVFVLEK 353 (354)
T ss_dssp CCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHH--HHHHHCC-TTEEEEEEEECCBTTBCCEEEEEEE
T ss_pred CCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHH--HHHHHhh-cCcEEEEEEEEEeCCEEEEEEEEEc
Confidence 754431 111347899999999999999999988753 2455555 77776422 1222 345666665
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.1e-10 Score=95.84 Aligned_cols=96 Identities=9% Similarity=0.055 Sum_probs=67.7
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCC------CCcc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTY------PRTY 133 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~y------p~sF 133 (221)
..++|||+|||+|.++..|++. +- ...++.+|.+ ++++.+.++ |+.. ++ .|..+.++.+ +++|
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPE-DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCT-TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 4679999999999999998875 10 1257888885 477777654 4422 22 3332222223 4899
Q ss_pred CeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 134 DLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 134 DlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|+|.+.... .+...++.++.|+|||||++++.+
T Consensus 158 D~V~~d~~~----~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDADK----DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSCS----TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCch----HHHHHHHHHHHHhCCCCeEEEEec
Confidence 999987442 256789999999999999999975
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.1e-09 Score=95.09 Aligned_cols=134 Identities=12% Similarity=0.028 Sum_probs=85.3
Q ss_pred CeEEeecCcchHHHHHHhh-CCCeEEEeccCCCC-CCHHHHHHcC-cc-----ce-eccccccCCCCC-CccCeeeeccc
Q 027609 72 RNVMDMRAVYGGFAAALKD-LKVWVMNVVPIESP-DTLPIIYERG-LF-----GL-YHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~-~~v~vmnv~~~d~~-~~l~~a~eRG-l~-----~~-~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
.+|||+|||.|+++..|++ .+-. .++.+|.+ .++++++++- +. .+ ..|..+-+..++ ++||+|.+..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~--~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~- 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQS--RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV- 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTC--EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC-
T ss_pred CEEEEEECCcCHHHHHHHHHCCCc--EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC-
Confidence 4999999999999999998 4322 46777775 5899888762 11 12 234222122355 8999999873
Q ss_pred ccccc-c---cHHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHhcCCeEEEee-------cCCCeeEEEEEec
Q 027609 142 FSTIK-K---SLKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKSLHWDVRMIY-------TNDNQGMLCVHKT 206 (221)
Q Consensus 142 ~~h~~-~---d~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~l~W~~~~~~-------~~~~e~~l~~~K~ 206 (221)
+.+.. . .-..++.++.|+|||||.+++.... .....+.+.+++.--.+.... ......|++|.|.
T Consensus 168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl~As~~ 247 (317)
T 3gjy_A 168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGSDT 247 (317)
T ss_dssp STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEEEEESS
T ss_pred CCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEEEEECC
Confidence 33321 0 1268999999999999999987432 223333333343333343332 1345788999987
Q ss_pred cc
Q 027609 207 YW 208 (221)
Q Consensus 207 ~w 208 (221)
-.
T Consensus 248 pl 249 (317)
T 3gjy_A 248 EF 249 (317)
T ss_dssp CC
T ss_pred CC
Confidence 65
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.91 E-value=7.3e-09 Score=84.21 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=82.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c-cceeccccccCCCCCCccCeeeecccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L-FGLYHDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l-~~~~~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
....+|||+|||+|.++..|++++.. +++++|.+ .+++.+.++- + +..++. .+..+|.+||+|.|+-.+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~---d~~~~~~~~D~v~~~~p~ 122 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIG---DVSEFNSRVDIVIMNPPF 122 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEES---CGGGCCCCCSEEEECCCC
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCCCEEEEEC---chHHcCCCCCEEEEcCCC
Confidence 34679999999999999999988643 57888886 5888887762 2 122221 122356799999999887
Q ss_pred ccccc-cHHHHHHHhhhhccCCeEEEEEc-ChhhHHHHHHHHHhcCCeEEE
Q 027609 143 STIKK-SLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 143 ~h~~~-d~~~vL~EmdRVLRPGG~~ii~d-~~~~~~~i~~i~~~l~W~~~~ 191 (221)
++... ....++.++.|+| ||.+++.- .....+.+.+.+....|++..
T Consensus 123 ~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 123 GSQRKHADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp SSSSTTTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred ccccCCchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEE
Confidence 76543 4467899999999 66555542 555677788888888887653
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.8e-09 Score=92.36 Aligned_cols=136 Identities=21% Similarity=0.231 Sum_probs=84.1
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcc-----------ce-eccccccCCCCCCccCe
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLF-----------GL-YHDWCESFNTYPRTYDL 135 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~-----------~~-~~d~~e~f~~yp~sFDl 135 (221)
...++|||+|||.|+++..++++.- +.+++.+|.+ .+++.+.++ +. .+ ..|..+.+...+++||+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~-~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIY-FKNISCGYEDKRVNVFIEDASKFLENVTNTYDV 154 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHH-CTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHH-hHHhccccCCCcEEEEECChHHHHHhCCCCceE
Confidence 3468999999999999999988741 2357888876 588888876 21 11 22321111112589999
Q ss_pred eeeccccccccc-cH--HHHHHHhhhhccCCeEEEEEcCh-----hhHHHHHHHHHhcCCeEEEee------cCCCeeEE
Q 027609 136 LHADHLFSTIKK-SL--KAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMIY------TNDNQGML 201 (221)
Q Consensus 136 Vh~~~v~~h~~~-d~--~~vL~EmdRVLRPGG~~ii~d~~-----~~~~~i~~i~~~l~W~~~~~~------~~~~e~~l 201 (221)
|.++.....-+. .. ..++.++.|+|||||.+++.... +....+.+.+++.--.+.... ..+.-.++
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~g~~g~~ 234 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGIL 234 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEE
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCCCcEEEE
Confidence 999643322111 22 68999999999999999998543 223334444444423333221 11223688
Q ss_pred EEEec
Q 027609 202 CVHKT 206 (221)
Q Consensus 202 ~~~K~ 206 (221)
+|.|.
T Consensus 235 ~~s~~ 239 (283)
T 2i7c_A 235 CCSKT 239 (283)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 88876
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-09 Score=92.23 Aligned_cols=96 Identities=10% Similarity=0.060 Sum_probs=67.3
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCC------CCcc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTY------PRTY 133 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~y------p~sF 133 (221)
..++|||+|||+|..+..|++. +- ...++.+|.+ ++++.+.++ |+.. + ..|..+.++.+ +++|
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPD-DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 4679999999999999998875 20 1256788875 477776553 5532 2 23433322223 4799
Q ss_pred CeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 134 DLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 134 DlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|+|.+... ..+...++.++.|+|||||++++.+
T Consensus 149 D~I~~d~~----~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDAD----KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCc----hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99998743 2256789999999999999999975
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=96.19 Aligned_cols=135 Identities=17% Similarity=0.195 Sum_probs=82.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc------Cc----cce-eccccccCCCCCCccCeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER------GL----FGL-YHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR------Gl----~~~-~~d~~e~f~~yp~sFDlVh 137 (221)
..++|||+|||+|+++..|+++.- ..+++.+|.+ .++++|.++ |+ +.+ ..|..+.+..-+++||+|.
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 458999999999999999988731 2367888886 588888876 22 111 1232221111248999999
Q ss_pred ecccccccccc--H--HHHHHHhhhhccCCeEEEEEcCh-----hhHHHHHHHHHhcCCeEEEee----c-CCCe-eEEE
Q 027609 138 ADHLFSTIKKS--L--KAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMIY----T-NDNQ-GMLC 202 (221)
Q Consensus 138 ~~~v~~h~~~d--~--~~vL~EmdRVLRPGG~~ii~d~~-----~~~~~i~~i~~~l~W~~~~~~----~-~~~e-~~l~ 202 (221)
++. +.++... . ..++.++.|+|||||.+++.... +....+.+.++.+-=.+.... + .+.. .+++
T Consensus 187 ~d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~~g~~~ 265 (314)
T 2b2c_A 187 TDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLI 265 (314)
T ss_dssp ECC-C-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEE
T ss_pred EcC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCcCCCceEEEE
Confidence 864 3333211 1 68899999999999999997532 234444444555433333221 1 1233 6888
Q ss_pred EEec
Q 027609 203 VHKT 206 (221)
Q Consensus 203 ~~K~ 206 (221)
|.|.
T Consensus 266 ask~ 269 (314)
T 2b2c_A 266 CAKN 269 (314)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8886
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.6e-10 Score=96.27 Aligned_cols=100 Identities=11% Similarity=0.041 Sum_probs=60.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc---ceec-ccccc-CCCCC----CccCe
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF---GLYH-DWCES-FNTYP----RTYDL 135 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~---~~~~-d~~e~-f~~yp----~sFDl 135 (221)
...+|||+|||+|.++..|+.+. ...+++++|.+ .+++.|.++ |+. ..++ |..+. +.+++ ++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 46789999999999999888751 01257888886 588877665 442 2222 32111 22344 58999
Q ss_pred eeeccccccccc--------------cHHHHHHHhhhhccCCeEEEEEc
Q 027609 136 LHADHLFSTIKK--------------SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 136 Vh~~~v~~h~~~--------------d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|.|+--+.+... ....++.++.|+|||||.+.+.+
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~ 192 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVK 192 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEH
Confidence 999855543220 12345678999999988776543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.89 E-value=8.8e-10 Score=91.12 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=66.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCC----eEEEeccCCCC-CCHHHHHHc----Cc-------cce-eccccccCCC---C
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKV----WVMNVVPIESP-DTLPIIYER----GL-------FGL-YHDWCESFNT---Y 129 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v----~vmnv~~~d~~-~~l~~a~eR----Gl-------~~~-~~d~~e~f~~---y 129 (221)
...+|||+|||+|.++..|++... ...+++++|.+ .+++.+.++ |+ +.. ..|..+ ..+ +
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~ 158 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQ-VNEEEKK 158 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGG-CCHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHh-cccccCc
Confidence 367999999999999999987532 11256888876 477777665 31 112 234322 110 2
Q ss_pred C-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 130 P-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 130 p-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+ .+||+|++...++++ +.++.|+|||||.+++.-..
T Consensus 159 ~~~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 159 ELGLFDAIHVGASASEL-------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHCCEEEEEECSBBSSC-------CHHHHHHEEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEcc
Confidence 3 889999999888765 36788999999999998643
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.1e-09 Score=94.13 Aligned_cols=135 Identities=20% Similarity=0.225 Sum_probs=86.0
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcC------c----cc-eeccccccCCCCCCccCee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERG------L----FG-LYHDWCESFNTYPRTYDLL 136 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRG------l----~~-~~~d~~e~f~~yp~sFDlV 136 (221)
..++|||+|||+|+++..++++ +. .+++.+|.+ .+++.+.++- + +. ...|..+.+...+++||+|
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 4589999999999999999987 33 257888886 5888888762 1 11 1223222111125899999
Q ss_pred eeccccccccc--c--HHHHHHHhhhhccCCeEEEEEcCh-----hhHHHHHHHHHhcCCeEEEee------cCCCeeEE
Q 027609 137 HADHLFSTIKK--S--LKAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMIY------TNDNQGML 201 (221)
Q Consensus 137 h~~~v~~h~~~--d--~~~vL~EmdRVLRPGG~~ii~d~~-----~~~~~i~~i~~~l~W~~~~~~------~~~~e~~l 201 (221)
.++. +.++.. . ...++.++.|+|||||.+++.... +....+.+.+++.--.+.... ..+.-.++
T Consensus 194 i~d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~ 272 (321)
T 2pt6_A 194 IVDS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGIL 272 (321)
T ss_dssp EEEC-CCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEE
T ss_pred EECC-cCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEE
Confidence 9874 222211 1 168999999999999999996432 234444444555444443332 12234588
Q ss_pred EEEecc
Q 027609 202 CVHKTY 207 (221)
Q Consensus 202 ~~~K~~ 207 (221)
+|.|.+
T Consensus 273 ~as~~~ 278 (321)
T 2pt6_A 273 CCSKTD 278 (321)
T ss_dssp EEESST
T ss_pred EeeCCC
Confidence 899875
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.88 E-value=4.7e-10 Score=93.33 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=65.9
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CC----eEEEeccCCCC-CCHHHHHHcC---------c--cc-eeccccccCCCCC-
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KV----WVMNVVPIESP-DTLPIIYERG---------L--FG-LYHDWCESFNTYP- 130 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v----~vmnv~~~d~~-~~l~~a~eRG---------l--~~-~~~d~~e~f~~yp- 130 (221)
...+|||+|||+|.+++.|++. +. ...+++.+|.+ ++++.+.++. . +. ...|..+ .++
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 160 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK---GYPP 160 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG---CCGG
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc---CCCc
Confidence 4679999999999999998874 21 00146788875 4777776652 1 11 2234332 343
Q ss_pred -CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 131 -RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 131 -~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
++||+|++...++|+. .++.|+|||||.+++.-..
T Consensus 161 ~~~fD~I~~~~~~~~~~-------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 161 NAPYNAIHVGAAAPDTP-------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp GCSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEESC
T ss_pred CCCccEEEECCchHHHH-------HHHHHHhcCCCEEEEEEec
Confidence 7999999998887765 5788999999999998643
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.9e-10 Score=99.64 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=66.9
Q ss_pred CCCCeEEeecCcc--hHHHHHHhhC---CCeEEEeccCCCC-CCHHHHHHcCccc-------e-ecccccc---CC-CC-
Q 027609 69 SFVRNVMDMRAVY--GGFAAALKDL---KVWVMNVVPIESP-DTLPIIYERGLFG-------L-YHDWCES---FN-TY- 129 (221)
Q Consensus 69 ~~~r~VLD~GcG~--G~faa~L~~~---~v~vmnv~~~d~~-~~l~~a~eRGl~~-------~-~~d~~e~---f~-~y- 129 (221)
..++.|||+|||+ ++....++.+ +. .|+.+|.+ .||+.++++ +.+ . ..|..+. +. +.
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~a---rVv~VD~sp~mLa~Ar~~-l~~~~~~~~~~v~aD~~~~~~~l~~~~~ 152 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPES---RVVYVDNDPIVLTLSQGL-LASTPEGRTAYVEADMLDPASILDAPEL 152 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTC---EEEEEECCHHHHHTTHHH-HCCCSSSEEEEEECCTTCHHHHHTCHHH
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCC---EEEEEeCChHHHHHHHHH-hccCCCCcEEEEEecccChhhhhccccc
Confidence 4589999999997 3333443332 23 57899986 599988776 321 1 2233221 00 00
Q ss_pred CCccC-----eeeeccccccccc--cHHHHHHHhhhhccCCeEEEEEc
Q 027609 130 PRTYD-----LLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 130 p~sFD-----lVh~~~v~~h~~~--d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.++|| .|.++.+|||+++ ++..+|.++.|.|+|||+|++++
T Consensus 153 ~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 153 RDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp HTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred ccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 14566 4788999999985 27899999999999999999994
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5e-09 Score=93.20 Aligned_cols=126 Identities=12% Similarity=0.114 Sum_probs=77.7
Q ss_pred CCCeEEeecC------cchH-HHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccc-eeccccccCCCCCCccCeeeeccc
Q 027609 70 FVRNVMDMRA------VYGG-FAAALKDLKVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~Gc------G~G~-faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~-~~~d~~e~f~~yp~sFDlVh~~~v 141 (221)
...+|||+|| |+|+ +++.+...+. .|+++|.+..+ + ++.= ...|+.+ + +++++||+|.|+..
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~---~V~gvDis~~v----~-~v~~~i~gD~~~-~-~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGTAVLRQWLPTGT---LLVDSDLNDFV----S-DADSTLIGDCAT-V-HTANKWDLIISDMY 132 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHHHHHHHHSCTTC---EEEEEESSCCB----C-SSSEEEESCGGG-C-CCSSCEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHcCCCC---EEEEEECCCCC----C-CCEEEEECcccc-C-CccCcccEEEEcCC
Confidence 4678999999 6687 2222222222 46777776442 1 2322 3456433 2 34589999999743
Q ss_pred cc--------ccc--ccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCe-EEEe--ecCCCeeEEEEEe
Q 027609 142 FS--------TIK--KSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWD-VRMI--YTNDNQGMLCVHK 205 (221)
Q Consensus 142 ~~--------h~~--~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~-~~~~--~~~~~e~~l~~~K 205 (221)
.+ +.. .....+|.|+.|+|||||.|++.... ....++.++++...+. +... ..++.|.+|+|+.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~asr~~s~e~~lv~~~ 210 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIGAN 210 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGGGTTSSCEEEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEcCCCchheEEecCC
Confidence 22 110 03458999999999999999996532 2235677777777554 3333 1334788998886
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.1e-09 Score=96.93 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=72.0
Q ss_pred hhhhccc--CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHH----HHcCccc---eeccccccCCCC
Q 027609 59 SYLNGMG--INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPII----YERGLFG---LYHDWCESFNTY 129 (221)
Q Consensus 59 ~Y~~~L~--i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a----~eRGl~~---~~~d~~e~f~~y 129 (221)
.|...|. ....+...|||+|||+|-++...++.|+. .|+++|.+++++.| ...|+.. +++.-.+.+ ..
T Consensus 70 aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~-~l 146 (376)
T 4hc4_A 70 AYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETV-EL 146 (376)
T ss_dssp HHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC-CC
T ss_pred HHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeee-cC
Confidence 4665442 22234678999999999998877777764 35677776666544 4456633 344323333 35
Q ss_pred CCccCeeeec---cccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 130 PRTYDLLHAD---HLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 130 p~sFDlVh~~---~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
|..||+|.|. .++.+-. ....++...+|.|||||.++-+
T Consensus 147 pe~~DvivsE~~~~~l~~e~-~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 147 PEQVDAIVSEWMGYGLLHES-MLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp SSCEEEEECCCCBTTBTTTC-SHHHHHHHHHHHEEEEEEEESC
T ss_pred CccccEEEeecccccccccc-hhhhHHHHHHhhCCCCceECCc
Confidence 7899999984 2333222 6788999999999999998865
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.8e-09 Score=93.79 Aligned_cols=116 Identities=10% Similarity=0.043 Sum_probs=81.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc--cce-eccccccCCC-CCCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL--FGL-YHDWCESFNT-YPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl--~~~-~~d~~e~f~~-yp~sFDlVh~~~ 140 (221)
...+|||+| |+|.++..|+..+.. ..++++|.+ ++++.+.++ |+ +.. ..|..+.++. ++++||+|.++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 468999999 999999999877531 157899986 688888776 54 222 3454332432 246999999998
Q ss_pred ccccccccHHHHHHHhhhhccCCe-EEEEEcCh--hhH---HHHHHHHH-hcCCeE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDG-NLILRDDA--ETI---VEVEDLVK-SLHWDV 189 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG-~~ii~d~~--~~~---~~i~~i~~-~l~W~~ 189 (221)
.+++.. ...++.++.|+||||| .++++-.. ... ..+++.+. ......
T Consensus 250 p~~~~~--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 303 (373)
T 2qm3_A 250 PETLEA--IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI 303 (373)
T ss_dssp CSSHHH--HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred CCchHH--HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence 776443 5899999999999999 44665443 223 66777776 666655
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.4e-09 Score=97.61 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=79.1
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc-e-eccccccCCCCCCccCeeeeccc-c
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG-L-YHDWCESFNTYPRTYDLLHADHL-F 142 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~-~-~~d~~e~f~~yp~sFDlVh~~~v-~ 142 (221)
..+|||+|||+|+|+..++..+.. |+++|.+ .+++.+.++ |+.. + ..|..+.+..+++.||+|.++-- |
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~---V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAY---ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCeEEEcccchhHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 679999999999999999998754 6888987 488877665 4432 1 23322212223545999998632 2
Q ss_pred cc-------ccccHHHHHHHhhhhccCCeEEEEEcChh------hHHHHHHHHHhcCCeEEE
Q 027609 143 ST-------IKKSLKAVVAEVDRILRPDGNLILRDDAE------TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 143 ~h-------~~~d~~~vL~EmdRVLRPGG~~ii~d~~~------~~~~i~~i~~~l~W~~~~ 191 (221)
.. ...+...++.++.|+|||||++++.++.. +.+.++..+....-+..+
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i 353 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRV 353 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEE
Confidence 21 11156789999999999999999776532 345555555555555443
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.7e-10 Score=96.62 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=74.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC--CCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCC----CCcc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTY----PRTY 133 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~--~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~y----p~sF 133 (221)
.....+|||+|||+|+++..|++. +. ..|+++|.+ .+++.+.++ |+.. ++ .|. ..++.. +++|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~-~~~~~~~~~~~~~f 157 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADM-RKYKDYLLKNEIFF 157 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCH-HHHHHHHHHTTCCE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCCh-HhcchhhhhccccC
Confidence 345679999999999999999873 31 146888876 477766655 5432 22 232 222221 4789
Q ss_pred Ceeeecccccc-----------------ccccHHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHh
Q 027609 134 DLLHADHLFST-----------------IKKSLKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKS 184 (221)
Q Consensus 134 DlVh~~~v~~h-----------------~~~d~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~ 184 (221)
|+|.|+--++. +......+|.++.|+|||||.++++++. +..+.++.+++.
T Consensus 158 D~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~ 229 (274)
T 3ajd_A 158 DKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK 229 (274)
T ss_dssp EEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHH
T ss_pred CEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHh
Confidence 99998732221 1125578999999999999999998653 224455665543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=5.3e-10 Score=106.69 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=69.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccc--eeccccccCC-CCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFG--LYHDWCESFN-TYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~--~~~d~~e~f~-~yp-~sFDlVh~~~ 140 (221)
+..+|||+|||.|-++..|+.+|+. |+++|.+ .++++|.. +|... ..+.-+|.+. .++ ++||+|.|..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~---V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGAT---IVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCE---EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 3568999999999999999999974 6999987 48887664 45322 1221123221 244 8999999999
Q ss_pred ccccccccHH--HHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKKSLK--AVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~d~~--~vL~EmdRVLRPGG~~ii~ 169 (221)
+|+|+. |+. ..+..+.+.|+++|..++-
T Consensus 143 ~~ehv~-~~~~~~~~~~~~~tl~~~~~~~~~ 172 (569)
T 4azs_A 143 VFHHIV-HLHGIDEVKRLLSRLADVTQAVIL 172 (569)
T ss_dssp CHHHHH-HHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred chhcCC-CHHHHHHHHHHHHHhccccceeeE
Confidence 999999 664 3355666778888876665
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.9e-09 Score=91.52 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=76.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCCCccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp~sFDlVh~~~v 141 (221)
...+|||+|||+|+|+..|+++.- ...|+++|.+ .+++.+.++ |+.+ . ..|. +.+ +.+++||+|.++..
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~-~~~-~~~~~~D~Vi~d~p 195 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADN-RDV-ELKDVADRVIMGYV 195 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCG-GGC-CCTTCEEEEEECCC
T ss_pred CCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECCh-HHc-CccCCceEEEECCc
Confidence 467999999999999999988731 1246888875 577766553 4432 2 2343 223 33579999998754
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcChh------hH-HHHHHHHHhcCCeEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDAE------TI-VEVEDLVKSLHWDVR 190 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~------~~-~~i~~i~~~l~W~~~ 190 (221)
. +...++.++.|+|||||.+++++... .. +.++.+.....+++.
T Consensus 196 ~-----~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 196 H-----KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp S-----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred c-----cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 3 45678999999999999999996532 23 334444555555543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.7e-09 Score=92.07 Aligned_cols=137 Identities=10% Similarity=0.081 Sum_probs=90.5
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCC----eEEEeccCCCC-CCHHHHHHc----Ccc-ceeccccccCCCCC-CccCee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKV----WVMNVVPIESP-DTLPIIYER----GLF-GLYHDWCESFNTYP-RTYDLL 136 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v----~vmnv~~~d~~-~~l~~a~eR----Gl~-~~~~d~~e~f~~yp-~sFDlV 136 (221)
.....+|||.|||+|+|+..++++.. ...++.++|.+ .++++|..+ |+. .+++ +..+.+.+ .+||+|
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~--~D~l~~~~~~~fD~I 205 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH--QDGLANLLVDPVDVV 205 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE--SCTTSCCCCCCEEEE
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEE--CCCCCccccCCccEE
Confidence 34578999999999999988876521 11468899986 477777664 441 1222 12344444 899999
Q ss_pred eecccccccccc----------------H-HHHHHHhhhhccCCeEEEEEcCh-----hhHHHHHHHHHhcCCeEEEee-
Q 027609 137 HADHLFSTIKKS----------------L-KAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMIY- 193 (221)
Q Consensus 137 h~~~v~~h~~~d----------------~-~~vL~EmdRVLRPGG~~ii~d~~-----~~~~~i~~i~~~l~W~~~~~~- 193 (221)
.|+--|.++..+ . ..++.++.+.|||||.+++..+. .....+.+.+..-+|-..+..
T Consensus 206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii~l 285 (344)
T 2f8l_A 206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKL 285 (344)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEEC
T ss_pred EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEeeeC
Confidence 999887665421 1 25899999999999999888633 234677777666666332221
Q ss_pred -------cCCCeeEEEEEec
Q 027609 194 -------TNDNQGMLCVHKT 206 (221)
Q Consensus 194 -------~~~~e~~l~~~K~ 206 (221)
+.-..-+++.+|.
T Consensus 286 p~~~F~~~~~~~~i~vl~k~ 305 (344)
T 2f8l_A 286 PETLFKSEQARKSILILEKA 305 (344)
T ss_dssp CGGGSCC-CCCEEEEEEEEC
T ss_pred ChhhccCCCCceEEEEEECC
Confidence 1225667777774
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.2e-09 Score=95.16 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=79.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-c-c--ee-ccccccCCCC---CCccCee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-F-G--LY-HDWCESFNTY---PRTYDLL 136 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~-~--~~-~d~~e~f~~y---p~sFDlV 136 (221)
...+|||+|||+|+|+..++..+.. .|+++|.+ .+++.+.++ |+ . . .+ .|..+.+..+ ..+||+|
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~--~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 4679999999999999999998642 57888886 477766654 44 3 2 12 2322211111 3689999
Q ss_pred eecc---------ccccccccHHHHHHHhhhhccCCeEEEEEcChh------hHHHHHHHHHhcCCeEE
Q 027609 137 HADH---------LFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE------TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 137 h~~~---------v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~------~~~~i~~i~~~l~W~~~ 190 (221)
.++- ++.+.. +...++.++.++|+|||+++++.+.. +.+.+++.+.....+..
T Consensus 298 i~dpP~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 365 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACR-GYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ 365 (396)
T ss_dssp EECCSSTTTCSSSSSCCCT-HHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred EECCCCCCCChhHHHHHHH-HHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 9972 222223 67889999999999999999986542 34455555555554443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.8e-09 Score=95.06 Aligned_cols=117 Identities=21% Similarity=0.217 Sum_probs=78.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCC---CCccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTY---PRTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~y---p~sFDlVh~ 138 (221)
...+|||+|||+|+|+..++.. ..+|+++|.+ .+++.+.++ |+.+ .+ .|..+.+..+ +.+||+|.+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 4678999999999999999886 3468889986 477776655 4432 22 2322111111 479999998
Q ss_pred ccc---------cccccccHHHHHHHhhhhccCCeEEEEEcChh------hHHHHHHHHHhcCCeEE
Q 027609 139 DHL---------FSTIKKSLKAVVAEVDRILRPDGNLILRDDAE------TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 139 ~~v---------~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~------~~~~i~~i~~~l~W~~~ 190 (221)
+-- +.... +...++.++.|+|+|||+++++.+.. +.+.+++.+...+.+..
T Consensus 286 dpP~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 351 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYR-AYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLR 351 (382)
T ss_dssp CCCCSCCSTTSHHHHHH-HHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCCCCChhHHHHHHH-HHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 521 11122 67789999999999999999997643 24445555555555443
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.8e-09 Score=96.35 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=78.3
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCC-CC-CccCeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNT-YP-RTYDLLH 137 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~-yp-~sFDlVh 137 (221)
.....+|||+|||+|+++..|++.---...++++|.+ .+++.+.++ |+.. + ..|..+ ++. |+ ++||+|.
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~-~~~~~~~~~fD~Vl 335 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARK-APEIIGEEVADKVL 335 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTC-CSSSSCSSCEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhh-cchhhccCCCCEEE
Confidence 3446799999999999999998741000146888886 477776665 5533 2 234322 332 66 8899999
Q ss_pred ec------cccccccc--------c-------HHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHhc-CCeE
Q 027609 138 AD------HLFSTIKK--------S-------LKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKSL-HWDV 189 (221)
Q Consensus 138 ~~------~v~~h~~~--------d-------~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~l-~W~~ 189 (221)
++ .++.+-++ + ...+|.++.|+|||||.++++++. +..+.++.++..- .|+.
T Consensus 336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~ 413 (450)
T 2yxl_A 336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKL 413 (450)
T ss_dssp EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEE
T ss_pred EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence 63 23332221 1 157899999999999999998763 2344566666654 4543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=93.61 Aligned_cols=116 Identities=14% Similarity=0.216 Sum_probs=75.8
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-cee-ccccccCCC-CC-CccCeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-GLY-HDWCESFNT-YP-RTYDLLH 137 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~~~-~d~~e~f~~-yp-~sFDlVh 137 (221)
......+|||+|||+|+++..|++..-. ..++++|.+ .+++.+.++ |+. .++ .|..+ ++. ++ ++||+|.
T Consensus 243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~-~~~~~~~~~fD~Vl 320 (429)
T 1sqg_A 243 APQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY-PSQWCGEQQFDRIL 320 (429)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTC-THHHHTTCCEEEEE
T ss_pred CCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhh-chhhcccCCCCEEE
Confidence 3445779999999999999999886321 357888875 578777665 442 122 23221 221 45 7999999
Q ss_pred ec------cccccccc--------c-------HHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHh
Q 027609 138 AD------HLFSTIKK--------S-------LKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKS 184 (221)
Q Consensus 138 ~~------~v~~h~~~--------d-------~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~ 184 (221)
++ .++.+-++ + ...+|.++.++|||||.++++++. +..+.++.++..
T Consensus 321 ~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~ 392 (429)
T 1sqg_A 321 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 392 (429)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred EeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHh
Confidence 53 22322221 1 147899999999999999999742 234556666554
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=6e-08 Score=83.45 Aligned_cols=128 Identities=9% Similarity=0.045 Sum_probs=90.6
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc----eeccccccCCCCC-C-ccCeeeec
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG----LYHDWCESFNTYP-R-TYDLLHAD 139 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~----~~~d~~e~f~~yp-~-sFDlVh~~ 139 (221)
..+|||+|||+|.++.+|+..+. .-.|+++|.+ .+++.|.++ |+.+ ...|+ |..++ . .||+|...
T Consensus 16 g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~---l~~l~~~~~~D~Ivia 91 (225)
T 3kr9_A 16 GAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANG---LAAFEETDQVSVITIA 91 (225)
T ss_dssp TEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG---GGGCCGGGCCCEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECch---hhhcccCcCCCEEEEc
Confidence 47899999999999999999853 2357888886 477766654 5533 22343 33455 4 69988765
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEee---cC-CCeeEEEEEec
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY---TN-DNQGMLCVHKT 206 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~---~~-~~e~~l~~~K~ 206 (221)
..-.. -...+|.+..+.|+|+|++|++-. .-.+.+.+.+....|.+.-.. .+ .--.++++.+.
T Consensus 92 G~Gg~---~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~~~~ 158 (225)
T 3kr9_A 92 GMGGR---LIARILEEGLGKLANVERLILQPN-NREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAG 158 (225)
T ss_dssp EECHH---HHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEES
T ss_pred CCChH---HHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence 44321 356889999999999999999876 457888888999999986332 22 23456777653
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.75 E-value=6.3e-09 Score=94.46 Aligned_cols=118 Identities=15% Similarity=0.083 Sum_probs=78.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-c--ee-ccccccCCC-C---CCccCee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-G--LY-HDWCESFNT-Y---PRTYDLL 136 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~--~~-~d~~e~f~~-y---p~sFDlV 136 (221)
...+|||+|||+|+|+..++..+.. +|+++|.+ .+++.+.++ |+. . .+ .|..+ +.+ + .++||+|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~--~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~-~~~~~~~~~~~fD~V 293 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE-EMEKLQKKGEKFDIV 293 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HHHHHHHTTCCEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHH-HHHHHHhhCCCCCEE
Confidence 4679999999999999999998642 46888886 477766554 442 1 22 23222 211 1 3689999
Q ss_pred eecc---------ccccccccHHHHHHHhhhhccCCeEEEEEcChh------hHHHHHHHHHhcCCeEEE
Q 027609 137 HADH---------LFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE------TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 137 h~~~---------v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~------~~~~i~~i~~~l~W~~~~ 191 (221)
.++- ++.+.. +...++.++.|+|+|||++++.++.. +.+.+.+.+.....+..+
T Consensus 294 i~dpP~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 362 (396)
T 2as0_A 294 VLDPPAFVQHEKDLKAGLR-AYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKM 362 (396)
T ss_dssp EECCCCSCSSGGGHHHHHH-HHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEE
T ss_pred EECCCCCCCCHHHHHHHHH-HHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 9952 222223 67889999999999999999986643 234444555555544443
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=7.4e-09 Score=94.39 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=77.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc--c--ee-ccccccCCCC---CCccCee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF--G--LY-HDWCESFNTY---PRTYDLL 136 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~--~--~~-~d~~e~f~~y---p~sFDlV 136 (221)
...+|||+|||+|+|+..++.+++. .|+++|.+ .+++.|.++ |+. . .+ .|..+.++.. ..+||+|
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~--~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 3578999999999999999987753 46888886 588877654 443 2 22 2321111111 2589999
Q ss_pred eecccc-----cccc---ccHHHHHHHhhhhccCCeEEEEEcChh------hHHHHHHHHHhcCCe
Q 027609 137 HADHLF-----STIK---KSLKAVVAEVDRILRPDGNLILRDDAE------TIVEVEDLVKSLHWD 188 (221)
Q Consensus 137 h~~~v~-----~h~~---~d~~~vL~EmdRVLRPGG~~ii~d~~~------~~~~i~~i~~~l~W~ 188 (221)
.++--. .+.. .+...++.++.|+|+|||+++++.+.. +.+.+...+.....+
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT 355 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence 985211 1111 156678889999999999999996543 344555556666666
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.73 E-value=7.7e-08 Score=83.89 Aligned_cols=128 Identities=10% Similarity=0.085 Sum_probs=91.0
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCC-CC-ccCeeeec
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTY-PR-TYDLLHAD 139 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~y-p~-sFDlVh~~ 139 (221)
..+|||+|||+|.++.+|+..+. .-.|+++|.+ .+++.|.++ |+.+ + ..|..+ .+ +. .||+|...
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~---~~~~~~~~D~Ivia 97 (244)
T 3gnl_A 22 NERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLA---VIEKKDAIDTIVIA 97 (244)
T ss_dssp SEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG---GCCGGGCCCEEEEE
T ss_pred CCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhh---ccCccccccEEEEe
Confidence 47899999999999999999852 2357888886 478777766 5533 2 234433 33 44 59998765
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEe----ecCCCeeEEEEEec
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMI----YTNDNQGMLCVHKT 206 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~----~~~~~e~~l~~~K~ 206 (221)
..--. -...+|.+..+.|+|+|+||++-.. -.+.+.+.+....|.+.-. +...--.+|.+.+.
T Consensus 98 gmGg~---lI~~IL~~~~~~L~~~~~lIlq~~~-~~~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~~~~ 164 (244)
T 3gnl_A 98 GMGGT---LIRTILEEGAAKLAGVTKLILQPNI-AAWQLREWSEQNNWLITSEAILREDNKVYEIMVLAPS 164 (244)
T ss_dssp EECHH---HHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHHHTEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CCchH---HHHHHHHHHHHHhCCCCEEEEEcCC-ChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence 44432 3467889999999999999999754 4778888899999997422 22234556777663
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-07 Score=82.00 Aligned_cols=129 Identities=9% Similarity=0.058 Sum_probs=91.2
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc----eeccccccCCCCC-CccCeeeecc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG----LYHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~----~~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
..+|||+|||+|.++.+|+..+. .-.|+++|.+ .+++.|.++ |+.. ...|..+.+ .+ ..||+|....
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~--~~~~~~D~IviaG 98 (230)
T 3lec_A 22 GARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF--EEADNIDTITICG 98 (230)
T ss_dssp TEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC--CGGGCCCEEEEEE
T ss_pred CCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc--ccccccCEEEEeC
Confidence 57899999999999999999852 2257888886 477776655 5432 223543322 24 3799987655
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEee----cCCCeeEEEEEec
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY----TNDNQGMLCVHKT 206 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~----~~~~e~~l~~~K~ 206 (221)
.-.. -...+|.+..+.|+++|+||++-.. -.+.+.+.+....|.+.-.. ...--.++.+.+.
T Consensus 99 mGg~---lI~~IL~~~~~~l~~~~~lIlqp~~-~~~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~~~~ 164 (230)
T 3lec_A 99 MGGR---LIADILNNDIDKLQHVKTLVLQPNN-REDDLRKWLAANDFEIVAEDILTENDKRYEILVVKHG 164 (230)
T ss_dssp ECHH---HHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHHTTEEEEEEEEEEC--CEEEEEEEEEC
T ss_pred CchH---HHHHHHHHHHHHhCcCCEEEEECCC-ChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence 4432 3568888999999999999999854 37888999999999986332 2234567777764
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.6e-09 Score=98.48 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=73.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCC-CCCccCeeeec-
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNT-YPRTYDLLHAD- 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~-yp~sFDlVh~~- 139 (221)
...+|||+|||+|+.+..|++.---...|+++|.+ .+++.+.++ |+.+ ++ .|. ..++. ++++||+|.|+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~-~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDG-RVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCS-TTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCH-HHhhhhccccCCEEEECC
Confidence 57899999999999999998751001146888886 477776665 5533 22 332 22333 35899999973
Q ss_pred -----ccccc-------ccc--------cHHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHh
Q 027609 140 -----HLFST-------IKK--------SLKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKS 184 (221)
Q Consensus 140 -----~v~~h-------~~~--------d~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~ 184 (221)
.++.+ |.. ....+|.++.|+|||||.++++++. +.-+.++.++..
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~ 264 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKET 264 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHH
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHH
Confidence 22221 110 1247899999999999999999763 223445555544
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=9.1e-09 Score=97.04 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=76.1
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-cee-ccccccCCC-CCCccCeeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-GLY-HDWCESFNT-YPRTYDLLHA 138 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~~~-~d~~e~f~~-yp~sFDlVh~ 138 (221)
......+|||+|||+|+.+..|+++--....|+++|.+ .+++.+.++ |+. .++ .|. ..++. ++++||+|.+
T Consensus 98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da-~~l~~~~~~~FD~Il~ 176 (464)
T 3m6w_A 98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPP-RALAEAFGTYFHRVLL 176 (464)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCH-HHHHHHHCSCEEEEEE
T ss_pred CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCH-HHhhhhccccCCEEEE
Confidence 34457899999999999999998651111146888886 477776665 442 222 232 22332 3589999995
Q ss_pred c------cccccccc---------------cHHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHhc
Q 027609 139 D------HLFSTIKK---------------SLKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKSL 185 (221)
Q Consensus 139 ~------~v~~h~~~---------------d~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~l 185 (221)
+ .++.+-++ ....+|.++.|+|||||.++++++. +.-+.++.+++..
T Consensus 177 D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~ 248 (464)
T 3m6w_A 177 DAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAH 248 (464)
T ss_dssp ECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred CCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHC
Confidence 2 22221110 1277999999999999999998763 3345566666654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-08 Score=88.44 Aligned_cols=141 Identities=10% Similarity=0.005 Sum_probs=96.3
Q ss_pred hhhhcccCCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCCCC
Q 027609 59 SYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNTYP 130 (221)
Q Consensus 59 ~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~yp 130 (221)
.|...+..- ....+|||+|||+|-|+..+... +.. .+..+|.+ .+++++.++ |+.. .+.|.. ..+.+
T Consensus 122 fY~~i~~~i-~~p~~VLDLGCG~GpLAl~~~~~~p~a--~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~--~~~p~ 196 (281)
T 3lcv_B 122 FYRELFRHL-PRPNTLRDLACGLNPLAAPWMGLPAET--VYIASDIDARLVGFVDEALTRLNVPHRTNVADLL--EDRLD 196 (281)
T ss_dssp HHHHHGGGS-CCCSEEEETTCTTGGGCCTTTTCCTTC--EEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTT--TSCCC
T ss_pred HHHHHHhcc-CCCceeeeeccCccHHHHHHHhhCCCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeec--ccCCC
Confidence 455555521 34789999999999999998776 322 46788875 588888776 3332 223321 12345
Q ss_pred CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC-----------hhhHHHHHHHHHhcCCeEEEeecCCCee
Q 027609 131 RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD-----------AETIVEVEDLVKSLHWDVRMIYTNDNQG 199 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-----------~~~~~~i~~i~~~l~W~~~~~~~~~~e~ 199 (221)
..||++.+..+++|+.+.....+.++-.-|+|+|.||--+. ..+....++.+..-.|.+.... -+.|-
T Consensus 197 ~~~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~-~~nEl 275 (281)
T 3lcv_B 197 EPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLE-IGNEL 275 (281)
T ss_dssp SCCSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEE-ETTEE
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeee-ecCee
Confidence 99999999999999985334455599999999999998887 1235778888888888654322 13455
Q ss_pred EEEEEe
Q 027609 200 MLCVHK 205 (221)
Q Consensus 200 ~l~~~K 205 (221)
+.+.+|
T Consensus 276 ~y~i~k 281 (281)
T 3lcv_B 276 IYVIQK 281 (281)
T ss_dssp EEEEC-
T ss_pred EEEecC
Confidence 555543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.9e-09 Score=102.44 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=79.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc----ce-eccccccCCCCCCccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF----GL-YHDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~----~~-~~d~~e~f~~yp~sFDlVh~~ 139 (221)
...+|||+|||+|+|+.+++..+.. .|+.+|.+ .+++.+.++ |+. .. ..|..+.+....++||+|.++
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~--~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGAR--STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 3679999999999999999888753 47888987 488877665 443 11 234222111124899999986
Q ss_pred c-----------ccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeE
Q 027609 140 H-----------LFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 140 ~-----------v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~ 189 (221)
- ++.+.. +...++.++.|+|||||+++++.+......-...+....++.
T Consensus 617 PP~f~~~~~~~~~~~~~~-~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~ 676 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQR-DHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKA 676 (703)
T ss_dssp CCSBC-------CCBHHH-HHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEE
T ss_pred CccccCCccchhHHHHHH-HHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCce
Confidence 3 233333 788899999999999999999976632222234445555553
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.5e-08 Score=89.36 Aligned_cols=116 Identities=11% Similarity=0.085 Sum_probs=78.7
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc---ccee-ccccccCCCCC-CccCeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL---FGLY-HDWCESFNTYP-RTYDLLH 137 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl---~~~~-~d~~e~f~~yp-~sFDlVh 137 (221)
+....+|||+|||+|+++..++..+.+. +++++|.+ .+++.|.++ |+ +... .|. ..++ ++ ++||+|.
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~-~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~-~~~~-~~~~~fD~Ii 291 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSG-EIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDA-TQLS-QYVDSVDFAI 291 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCS-CEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCG-GGGG-GTCSCEEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCC-cccCCcCEEE
Confidence 4567899999999999999999886532 47888886 588877765 44 2222 343 2233 44 8999999
Q ss_pred eccccccc-------cccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE
Q 027609 138 ADHLFSTI-------KKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 138 ~~~v~~h~-------~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
|+--+..- .+-...++.++.|+| +|+.+++.... +.+++.+....|+..
T Consensus 292 ~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~~~---~~~~~~~~~~G~~~~ 347 (373)
T 3tm4_A 292 SNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITTEK---KAIEEAIAENGFEII 347 (373)
T ss_dssp EECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEESCH---HHHHHHHHHTTEEEE
T ss_pred ECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEECCH---HHHHHHHHHcCCEEE
Confidence 97554321 111267899999999 55555555544 345567788888875
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-08 Score=88.47 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=60.7
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc---cceeccccccCCCCC-CccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL---FGLYHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl---~~~~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
....+|||+|||+|.++..|++++. +++++|.+ ++++.+.++ |+ +.+++. .+..++ .+||+|.|+
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---D~~~~~~~~fD~vv~n 100 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVG---DVLKTDLPFFDTCVAN 100 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEES---CTTTSCCCCCSEEEEE
T ss_pred CCCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEc---ceecccchhhcEEEEe
Confidence 3467999999999999999998864 56888886 588887775 22 112221 122234 589999997
Q ss_pred cccccccccHH-HHH--------------HHh--hhhccCCeEEEE
Q 027609 140 HLFSTIKKSLK-AVV--------------AEV--DRILRPDGNLIL 168 (221)
Q Consensus 140 ~v~~h~~~d~~-~vL--------------~Em--dRVLRPGG~~ii 168 (221)
..++ +..... .+| .|+ .|+|||||.++.
T Consensus 101 lpy~-~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~ 145 (285)
T 1zq9_A 101 LPYQ-ISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC 145 (285)
T ss_dssp CCGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred cCcc-cchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence 5443 221111 122 344 479999999753
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-07 Score=82.53 Aligned_cols=139 Identities=10% Similarity=-0.086 Sum_probs=93.9
Q ss_pred hhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----ccc--eeccccccCCCCCC
Q 027609 59 SYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LFG--LYHDWCESFNTYPR 131 (221)
Q Consensus 59 ~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~~--~~~d~~e~f~~yp~ 131 (221)
.|...++. ....+|||+|||+|-|+..+. .+. .+.+.|.+ .+++++.++. ... .+.|.. ..+.|.
T Consensus 96 fY~~i~~~--~~p~~VLDlGCG~gpLal~~~-~~~---~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~--~~~~~~ 167 (253)
T 3frh_A 96 LYDFIFSA--ETPRRVLDIACGLNPLALYER-GIA---SVWGCDIHQGLGDVITPFAREKDWDFTFALQDVL--CAPPAE 167 (253)
T ss_dssp HHHHHTSS--CCCSEEEEETCTTTHHHHHHT-TCS---EEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTT--TSCCCC
T ss_pred HHHHHhcC--CCCCeEEEecCCccHHHHHhc-cCC---eEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecc--cCCCCC
Confidence 45555554 568899999999999999887 222 36788886 5888877772 211 223321 234569
Q ss_pred ccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChh-----------hHHHHHHHHHhcCCeEEEeecCCCeeE
Q 027609 132 TYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE-----------TIVEVEDLVKSLHWDVRMIYTNDNQGM 200 (221)
Q Consensus 132 sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-----------~~~~i~~i~~~l~W~~~~~~~~~~e~~ 200 (221)
+||+|.+..+++|+.+.....+.++-+-|+|+|.||--++.. ....+++.+..--|.+....- +.|-+
T Consensus 168 ~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~-~nEl~ 246 (253)
T 3frh_A 168 AGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTI-GTELI 246 (253)
T ss_dssp BCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEE-TTEEE
T ss_pred CcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheec-CceEE
Confidence 999999998888886633344558888999999999887322 245667767777777653322 35677
Q ss_pred EEEEec
Q 027609 201 LCVHKT 206 (221)
Q Consensus 201 l~~~K~ 206 (221)
.+.+|.
T Consensus 247 ~~i~~~ 252 (253)
T 3frh_A 247 YLIKKN 252 (253)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 777763
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=5.9e-08 Score=86.34 Aligned_cols=133 Identities=13% Similarity=0.072 Sum_probs=75.8
Q ss_pred CCeEEeecCcchHHHHHHhhC-CCeE-E-EeccCCCC-CCHHHHHHcCcc-ceeccccccCCCCC-CccCeeeeccccc-
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-KVWV-M-NVVPIESP-DTLPIIYERGLF-GLYHDWCESFNTYP-RTYDLLHADHLFS- 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-~v~v-m-nv~~~d~~-~~l~~a~eRGl~-~~~~d~~e~f~~yp-~sFDlVh~~~v~~- 143 (221)
..+|||+|||+|+|+...+++ ++-. . -++++|.+ +.+.. ...|.. -...+-++ ...++ ..||+|.|+...+
T Consensus 75 ~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~~ii~~~~~~d-v~~l~~~~~DlVlsD~apns 152 (277)
T 3evf_A 75 EGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGWNIITFKDKTD-IHRLEPVKCDTLLCDIGESS 152 (277)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTGGGEEEECSCC-TTTSCCCCCSEEEECCCCCC
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCCCeEEEeccce-ehhcCCCCccEEEecCccCc
Confidence 558999999999999987765 4321 1 12344432 11110 011110 01111112 22355 8999999987554
Q ss_pred --ccccc--HHHHHHHhhhhccCC-eEEEEEcCh-------hhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 144 --TIKKS--LKAVVAEVDRILRPD-GNLILRDDA-------ETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 144 --h~~~d--~~~vL~EmdRVLRPG-G~~ii~d~~-------~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
++.+. -..+|..+.++|||| |.||+.--. +++..++..+++.+...-..-.++.|.+++|+.
T Consensus 153 G~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V~~~KPaSR~~S~E~Y~V~~~ 226 (277)
T 3evf_A 153 SSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPLSRNSTHEMYYVSGA 226 (277)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCTTSCTTCCCEEEESSC
T ss_pred CchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCEEEEeCCCCCCCCceEEEEec
Confidence 23321 123578889999999 999998544 334555555555444332111345799999876
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-08 Score=93.20 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=76.3
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC--CCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCC-CCCccCee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNT-YPRTYDLL 136 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~--~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~-yp~sFDlV 136 (221)
.....+|||+|||+|+.+.+|+++ +. ..|+++|.+ .+++.+.++ |+.+ ++ .|. ..+.. ++++||+|
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~--g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da-~~l~~~~~~~FD~I 179 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGK--GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAP-AELVPHFSGFFDRI 179 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTC--SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCH-HHHHHHHTTCEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH-HHhhhhccccCCEE
Confidence 445789999999999999988875 21 146788886 467666554 5433 22 232 22332 45899999
Q ss_pred eecc------cccccc---------------ccHHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHhcCCe
Q 027609 137 HADH------LFSTIK---------------KSLKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKSLHWD 188 (221)
Q Consensus 137 h~~~------v~~h~~---------------~d~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~l~W~ 188 (221)
.++- ++.+-+ .....+|.++.|+|||||.++++++. +.-+.|+.++....++
T Consensus 180 l~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~ 256 (456)
T 3m4x_A 180 VVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVT 256 (456)
T ss_dssp EEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred EECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCE
Confidence 9742 121111 01227899999999999999998763 3455677777665443
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-07 Score=84.46 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=71.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcccee-ccccccCCCCC-CccCeeeeccccc---
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLY-HDWCESFNTYP-RTYDLLHADHLFS--- 143 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~-~d~~e~f~~yp-~sFDlVh~~~v~~--- 143 (221)
...+|||+|||+|+|+.+++++-....++.++|.+ .+++.+ .+ + .++ .|.. ...+ ..||+|.|+--+.
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-~~-~-~~~~~D~~---~~~~~~~fD~Ii~NPPy~~~~ 112 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-PW-A-EGILADFL---LWEPGEAFDLILGNPPYGIVG 112 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-TT-E-EEEESCGG---GCCCSSCEEEEEECCCCCCBS
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-CC-C-cEEeCChh---hcCccCCCCEEEECcCccCcc
Confidence 34589999999999999998751001156777774 466555 22 2 222 2321 1123 7999999952221
Q ss_pred -------cccc------------------cHHHHHHHhhhhccCCeEEEEEcChh-----hHHHHHHHHHhcCC
Q 027609 144 -------TIKK------------------SLKAVVAEVDRILRPDGNLILRDDAE-----TIVEVEDLVKSLHW 187 (221)
Q Consensus 144 -------h~~~------------------d~~~vL~EmdRVLRPGG~~ii~d~~~-----~~~~i~~i~~~l~W 187 (221)
|..+ ....++..+.++|+|||.+++-.+.. ..+++.+.+..-++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 113 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK 186 (421)
T ss_dssp CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred cccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence 1111 11266889999999999998886654 34677777777677
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=7.7e-08 Score=85.92 Aligned_cols=106 Identities=13% Similarity=0.062 Sum_probs=70.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc---ceec-cccccCCCCCCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF---GLYH-DWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~---~~~~-d~~e~f~~yp~sFDlVh~~~ 140 (221)
...+|||+|||+|+|+.. ++.+. +++++|.+ .+++.+.++ |+. ..++ |. .. +.++||+|.++-
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~~~---~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~-~~---~~~~fD~Vi~dp 266 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKNAK---KIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV-RE---VDVKGNRVIMNL 266 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTTSS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCG-GG---CCCCEEEEEECC
T ss_pred CCCEEEEccCccCHHHHh-ccCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCh-HH---hcCCCcEEEECC
Confidence 467999999999999999 77432 46888876 477766554 442 1222 32 21 238999999862
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhc-CCe
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSL-HWD 188 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l-~W~ 188 (221)
- .....++.++.|+|+|||++++.+.....+.+.+.+... .++
T Consensus 267 P-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~l~~~~~~~ 310 (336)
T 2yx1_A 267 P-----KFAHKFIDKALDIVEEGGVIHYYTIGKDFDKAIKLFEKKCDCE 310 (336)
T ss_dssp T-----TTGGGGHHHHHHHEEEEEEEEEEEEESSSHHHHHHHHHHSEEE
T ss_pred c-----HhHHHHHHHHHHHcCCCCEEEEEEeecCchHHHHHHHHhcCCc
Confidence 1 123478899999999999999976544344444444444 444
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.9e-07 Score=81.32 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=75.7
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccc---eec-cccccCCCCCCccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFG---LYH-DWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~---~~~-d~~e~f~~yp~sFDlVh~~~v 141 (221)
..+|||+|||+|.|+-.++.++.. .|+++|.+ ..++.+.+ .|+.+ +++ | +..|. ..+.||.|..+..
T Consensus 126 g~~VlD~~aG~G~~~i~~a~~g~~--~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D-~~~~~-~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 126 DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMD-NRDFP-GENIADRILMGYV 201 (278)
T ss_dssp TCEEEETTCTTTTTTHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC-TTTCC-CCSCEEEEEECCC
T ss_pred CCEEEEecCcCcHHHHHHHHhcCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCc-HHHhc-cccCCCEEEECCC
Confidence 678999999999999988887642 46788875 45555444 34533 222 3 22122 1288999887632
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcC-------hhhHHHHHHHHHhcCCeEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDD-------AETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-------~~~~~~i~~i~~~l~W~~~~ 191 (221)
. ....+|.+.-++|||||++.+-+. ....+.++++++...+++..
T Consensus 202 ~-----~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~ 253 (278)
T 3k6r_A 202 V-----RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp S-----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred C-----cHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEE
Confidence 2 334567778899999999876432 22467788889999998754
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=8.4e-07 Score=82.30 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=64.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-cee-ccccccCCCCCCccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-GLY-HDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~~~-~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
...+|||+|||+|.|+..|++++. .|+++|.+ ++++.|.++ |+. ..+ .|. +.+ .+.+||+|.++--.
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~-~~~--~~~~fD~Vv~dPPr 363 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVDAEFEVASD-REV--SVKGFDTVIVDPPR 363 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCT-TTC--CCTTCSEEEECCCT
T ss_pred CCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCcEEEEECCh-HHc--CccCCCEEEEcCCc
Confidence 467899999999999999998753 56888886 588777654 332 222 232 212 23589999987443
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcChhhH
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDDAETI 175 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~ 175 (221)
..+. ..++..+ +.|+|||.++++-....+
T Consensus 364 ~g~~---~~~~~~l-~~l~p~givyvsc~p~tl 392 (425)
T 2jjq_A 364 AGLH---PRLVKRL-NREKPGVIVYVSCNPETF 392 (425)
T ss_dssp TCSC---HHHHHHH-HHHCCSEEEEEESCHHHH
T ss_pred cchH---HHHHHHH-HhcCCCcEEEEECChHHH
Confidence 3222 3455555 459999999999766543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.8e-07 Score=81.11 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=60.0
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCCCC-CccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
....+|||+|||+|.++..|++++. +|+++|.+ .+++.+.++ |+.. +++ ..+..++ .+||+|.|+.
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~---~D~~~~~~~~~D~Vv~n~ 114 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLEVYE---GDAIKTVFPKFDVCTANI 114 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEC-------CCSSCCCCCSEEEEEC
T ss_pred CCcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEE---CchhhCCcccCCEEEEcC
Confidence 3467999999999999999999864 57888886 588877765 3322 222 1223345 7999999975
Q ss_pred ccccccc-cHHHHH---------------HHhhhhccCCeE
Q 027609 141 LFSTIKK-SLKAVV---------------AEVDRILRPDGN 165 (221)
Q Consensus 141 v~~h~~~-d~~~vL---------------~EmdRVLRPGG~ 165 (221)
.++ +.. ....+| .+..|+++|+|.
T Consensus 115 py~-~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~ 154 (299)
T 2h1r_A 115 PYK-ISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGD 154 (299)
T ss_dssp CGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred Ccc-cccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence 544 332 222333 347799998885
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-09 Score=91.03 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=60.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC--c--ccee-ccccccCCCCC--CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG--L--FGLY-HDWCESFNTYP--RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG--l--~~~~-~d~~e~f~~yp--~sFDlVh~~~v 141 (221)
...+|||+|||+|.++..|++++. +++++|.+ ++++.+.++- . +.++ .|. +.++ ++ ++| .|.|+--
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~-~~~~-~~~~~~f-~vv~n~P 102 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDI-LQFQ-FPNKQRY-KIVGNIP 102 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTTCSEEEECCSCC-TTTT-CCCSSEE-EEEEECC
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhccCCceEEEECCh-hhcC-cccCCCc-EEEEeCC
Confidence 467899999999999999998863 57888885 5777666552 1 1122 232 2222 44 578 6666521
Q ss_pred -----------cccccccHHHHH----HHhhhhccCCeEEEEEc
Q 027609 142 -----------FSTIKKSLKAVV----AEVDRILRPDGNLILRD 170 (221)
Q Consensus 142 -----------~~h~~~d~~~vL----~EmdRVLRPGG~~ii~d 170 (221)
+.|.. ++..++ .++.|+|+|||.+++..
T Consensus 103 y~~~~~~~~~~~~~~~-~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 103 YHLSTQIIKKVVFESR-ASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SSSCHHHHHHHHHHCC-CEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred ccccHHHHHHHHhCCC-CCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 12222 333445 55999999999887654
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=3.2e-08 Score=84.59 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=35.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
....+|||+|||+|.++..|++++. .++++|.+ ++++.+.++
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~ 71 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENK 71 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHH
T ss_pred CCCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHh
Confidence 3467999999999999999999873 57889986 588888876
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=5.9e-06 Score=76.21 Aligned_cols=129 Identities=15% Similarity=0.192 Sum_probs=83.0
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCC--CC-CccCeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNT--YP-RTYDLLH 137 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~--yp-~sFDlVh 137 (221)
....+|||+|||+|.|+..|++++. .|+++|.+ ++++.|.++ |+.. . ..|+.+.+.. ++ ++||+|.
T Consensus 285 ~~~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 285 QPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 3467899999999999999998843 46888886 588877654 4322 2 2354443332 44 7899999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEE---ee----cCCCeeEEEEEe
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM---IY----TNDNQGMLCVHK 205 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~---~~----~~~~e~~l~~~K 205 (221)
++--... ...++..+.+ ++|++.++++-....+.+--..+....|+... .| +..=|-+.+.+|
T Consensus 362 ~dPPr~g----~~~~~~~l~~-~~p~~ivyvsc~p~tlard~~~l~~~Gy~~~~~~~~d~Fp~t~HvE~v~ll~r 431 (433)
T 1uwv_A 362 LDPARAG----AAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 (433)
T ss_dssp ECCCTTC----CHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEECCSTTSSCCEEEEEEEC
T ss_pred ECCCCcc----HHHHHHHHHh-cCCCeEEEEECChHHHHhhHHHHHHCCcEEEEEEEeccCCCCCeEEEEEEEEE
Confidence 8632221 1234444443 79999999998777665555555656787643 22 334566655544
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-06 Score=79.85 Aligned_cols=41 Identities=20% Similarity=0.414 Sum_probs=34.5
Q ss_pred CC-CccCeeeeccccccccc-------------------------------------cHHHHHHHhhhhccCCeEEEEE
Q 027609 129 YP-RTYDLLHADHLFSTIKK-------------------------------------SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 129 yp-~sFDlVh~~~v~~h~~~-------------------------------------d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
|| +|||+||++.+||-+.+ |...+|....|.|||||.++++
T Consensus 146 fP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~ 224 (374)
T 3b5i_A 146 FPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLV 224 (374)
T ss_dssp SCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 77 99999999999984331 4556788999999999999998
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.4e-06 Score=78.84 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=77.8
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCC------------CeEEEeccCCCC-CCHHHHHH----cCcc----ceecccccc
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLK------------VWVMNVVPIESP-DTLPIIYE----RGLF----GLYHDWCES 125 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~------------v~vmnv~~~d~~-~~l~~a~e----RGl~----~~~~d~~e~ 125 (221)
......+|||.|||+|+|...+.++- ....++.++|.. .++++|.. +|+. .+.+ +..
T Consensus 168 ~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~--gD~ 245 (445)
T 2okc_A 168 NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVC--EDS 245 (445)
T ss_dssp CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEE--CCT
T ss_pred CCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEee--CCC
Confidence 34456789999999999998876530 001135777775 47776654 3442 2222 122
Q ss_pred CCCCC-CccCeeeeccccccccc-c---------------HHHHHHHhhhhccCCeEEEEEcChhhH------HHHHH-H
Q 027609 126 FNTYP-RTYDLLHADHLFSTIKK-S---------------LKAVVAEVDRILRPDGNLILRDDAETI------VEVED-L 181 (221)
Q Consensus 126 f~~yp-~sFDlVh~~~v~~h~~~-d---------------~~~vL~EmdRVLRPGG~~ii~d~~~~~------~~i~~-i 181 (221)
+..-+ ..||+|.|+--|.+... + ...++.++.|+|||||.+++-.++..+ ..+.+ +
T Consensus 246 l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L 325 (445)
T 2okc_A 246 LEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRL 325 (445)
T ss_dssp TTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHH
T ss_pred CCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHH
Confidence 32222 68999999977765321 1 247899999999999999887765432 44554 5
Q ss_pred HHhcCCeEEE
Q 027609 182 VKSLHWDVRM 191 (221)
Q Consensus 182 ~~~l~W~~~~ 191 (221)
+....++..+
T Consensus 326 ~~~~~l~~ii 335 (445)
T 2okc_A 326 LQDFNLHTIL 335 (445)
T ss_dssp HHHEEEEEEE
T ss_pred HhcCcEEEEE
Confidence 5565565543
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.16 E-value=9.4e-07 Score=78.78 Aligned_cols=132 Identities=13% Similarity=0.023 Sum_probs=74.7
Q ss_pred CCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHH---cCc-cceeccccccCCCCC-CccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYE---RGL-FGLYHDWCESFNTYP-RTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~e---RGl-~~~~~d~~e~f~~yp-~sFDlVh~~~v~~ 143 (221)
..+|||+|||+|+|+...+++ ++ .++.+++.. ++...+.. .|. +-...+-++ +..++ +.||+|.|+....
T Consensus 91 ~~~VLDLGaAPGGWsQvAa~~~gv--~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~d-v~~l~~~~~DvVLSDmApn 167 (282)
T 3gcz_A 91 TGIVVDLGCGRGGWSYYAASLKNV--KKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTD-VFNMEVIPGDTLLCDIGES 167 (282)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTE--EEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCC-GGGSCCCCCSEEEECCCCC
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCC--CeeeeEEeccCccccccccccCCCceEEeeCCcc-hhhcCCCCcCEEEecCccC
Confidence 568999999999999987754 43 245555542 11100000 011 001111112 22345 8999999997765
Q ss_pred ---cccc--cHHHHHHHhhhhccCC--eEEEEEcCh-------hhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 144 ---TIKK--SLKAVVAEVDRILRPD--GNLILRDDA-------ETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 144 ---h~~~--d~~~vL~EmdRVLRPG--G~~ii~d~~-------~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
+..+ .-..+|.=+.++|||| |.|++.--. .++..++..+++.+...-..-.++.|.++||+.
T Consensus 168 sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V~~~KPaSR~~S~E~Y~V~~~ 243 (282)
T 3gcz_A 168 SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGLVRVPLSRNSTHEMYWVSGT 243 (282)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCTTSCTTCCCEEEETTC
T ss_pred CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCEEEEcCCCcccCcceeEEEec
Confidence 1111 1112344457899999 999998433 345556665655544432111345799999876
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0001 Score=68.00 Aligned_cols=128 Identities=13% Similarity=0.215 Sum_probs=79.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCC--CccCeeeeccccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP--RTYDLLHADHLFSTIKK 147 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp--~sFDlVh~~~v~~h~~~ 147 (221)
...+|||+||.+||++..|++++.. |+++|...|-+...+.+. +.|--+..|..-| +.||+|.|..+.
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~rg~~---V~aVD~~~l~~~l~~~~~--V~~~~~d~~~~~~~~~~~D~vvsDm~~----- 280 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKRNMW---VYSVDNGPMAQSLMDTGQ--VTWLREDGFKFRPTRSNISWMVCDMVE----- 280 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCE---EEEECSSCCCHHHHTTTC--EEEECSCTTTCCCCSSCEEEEEECCSS-----
T ss_pred CCCEEEEeCcCCCHHHHHHHHCCCE---EEEEEhhhcChhhccCCC--eEEEeCccccccCCCCCcCEEEEcCCC-----
Confidence 4789999999999999999999864 577776556555544433 3221122333223 689999998655
Q ss_pred cHHHHHHHhhhhccCC---eEEEEE----cC-----hhhHHHHHHHHHhcC--CeEEEe--ecCCCeeEEEEEeccc
Q 027609 148 SLKAVVAEVDRILRPD---GNLILR----DD-----AETIVEVEDLVKSLH--WDVRMI--YTNDNQGMLCVHKTYW 208 (221)
Q Consensus 148 d~~~vL~EmdRVLRPG---G~~ii~----d~-----~~~~~~i~~i~~~l~--W~~~~~--~~~~~e~~l~~~K~~w 208 (221)
+|..++.-|.+.|..| +.++.- +. .+.++.+.+.+.+-. ...... .|+..|..+.++| .|
T Consensus 281 ~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~~l~akhL~hdReEiTV~~rk-~~ 356 (375)
T 4auk_A 281 KPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRR-IW 356 (375)
T ss_dssp CHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCSSEEEEEEEE-CC
T ss_pred ChHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcchhheehhhccCCcEEEEEEEe-ch
Confidence 5778888888888776 444332 11 122445555554433 333332 3555667777766 44
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.00 E-value=9e-06 Score=74.41 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=64.1
Q ss_pred CCCeEEeecCcchHHHHHHhhC---------------CCeEEEeccCCCC-CCHHHHHHcCccc-------ee-cccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL---------------KVWVMNVVPIESP-DTLPIIYERGLFG-------LY-HDWCES 125 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~---------------~v~vmnv~~~d~~-~~l~~a~eRGl~~-------~~-~d~~e~ 125 (221)
..-+|+|+||++|..+..+++. +...+.|.--|.+ +.-..++.+ |++ .+ .....+
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~-L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRS-LPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTT-TTTSCSCTTCEEEEEEESC
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHh-cchhcccCCCEEEEecchh
Confidence 4567999999999866655444 2334566667765 455555554 332 11 111122
Q ss_pred C--CCCC-CccCeeeeccccccccc--------------------------------cHHHHHHHhhhhccCCeEEEEE
Q 027609 126 F--NTYP-RTYDLLHADHLFSTIKK--------------------------------SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 126 f--~~yp-~sFDlVh~~~v~~h~~~--------------------------------d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
| -.|| +|||+||++.++|-+.+ |...+|.=..|.|+|||.+++.
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 2 1378 99999999998873221 2334477779999999999998
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=9.7e-06 Score=72.80 Aligned_cols=133 Identities=17% Similarity=0.126 Sum_probs=75.4
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCH--HHH-HHcCc-cceeccccccCCCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTL--PII-YERGL-FGLYHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l--~~a-~eRGl-~~~~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
..++|||+||++|+|+..++++ ++ ..+.++|.. ++. +.. ...|. +-...+-++ +-.++ ..||+|.|+...
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~gv--~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~d-i~~l~~~~~DlVlsD~AP 157 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQKEV--MSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSN-VFTMPTEPSDTLLCDIGE 157 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTSTTE--EEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCC-TTTSCCCCCSEEEECCCC
T ss_pred CCCEEEEcCCCCCHHHHHHHHhcCC--ceeeeEEeccccccccccccccCCceEEeecCce-eeecCCCCcCEEeecCcC
Confidence 5889999999999999999986 43 245555542 110 000 00010 001111112 22344 899999998665
Q ss_pred c---cccc--cHHHHHHHhhhhccCC-eEEEEEcCh-------hhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 143 S---TIKK--SLKAVVAEVDRILRPD-GNLILRDDA-------ETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 143 ~---h~~~--d~~~vL~EmdRVLRPG-G~~ii~d~~-------~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
. +..+ .-..+|.=+.++|+|| |.|++.--. ..+..++..+.+.+...-..-.++.|.++||..
T Consensus 158 nsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~~V~~~KPaSR~~S~E~Y~V~~~ 233 (300)
T 3eld_A 158 SSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVPFSRNSTHEMYYISGA 233 (300)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHCCEEECCTTSCTTCCCEEEESSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCCcEEEEeCCCCCCChHHeeeccC
Confidence 4 1111 0122343347899999 999998444 345556665555544332111345799999876
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.2e-06 Score=80.80 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=57.0
Q ss_pred CCeEEeecCcchHHHHHHhhC----------------CCeEEEeccCCCC--C--CH----H-----HHHHcCc-cc-ee
Q 027609 71 VRNVMDMRAVYGGFAAALKDL----------------KVWVMNVVPIESP--D--TL----P-----IIYERGL-FG-LY 119 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~----------------~v~vmnv~~~d~~--~--~l----~-----~a~eRGl-~~-~~ 119 (221)
.-+|+|+||++|..+..+++. ....+.|.--|.+ + +| + ...+.|. .+ .+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 678999999999877766544 0123455555554 1 11 1 1122221 11 11
Q ss_pred -ccccccCC--CCC-CccCeeeeccccccccccH-----------------------HHH---------------HHHhh
Q 027609 120 -HDWCESFN--TYP-RTYDLLHADHLFSTIKKSL-----------------------KAV---------------VAEVD 157 (221)
Q Consensus 120 -~d~~e~f~--~yp-~sFDlVh~~~v~~h~~~d~-----------------------~~v---------------L~Emd 157 (221)
.....+|- .|| +|||+||++.+||-+.+-| ..+ |.=..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112221 277 9999999999997333211 112 44448
Q ss_pred hhccCCeEEEEE
Q 027609 158 RILRPDGNLILR 169 (221)
Q Consensus 158 RVLRPGG~~ii~ 169 (221)
|.|+|||.+++.
T Consensus 213 ~eL~pGG~mvl~ 224 (384)
T 2efj_A 213 EELISRGRMLLT 224 (384)
T ss_dssp HHEEEEEEEEEE
T ss_pred HHhccCCeEEEE
Confidence 999999999998
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.92 E-value=8.3e-06 Score=74.54 Aligned_cols=107 Identities=14% Similarity=0.216 Sum_probs=69.6
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCe-------------------------------------EEEeccCCCC-CCHH
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVW-------------------------------------VMNVVPIESP-DTLP 108 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~-------------------------------------vmnv~~~d~~-~~l~ 108 (221)
.+.....|||.+||+|+|+..++..+.. ...|.++|.+ .+++
T Consensus 192 ~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~ 271 (385)
T 3ldu_A 192 PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESID 271 (385)
T ss_dssp CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHH
T ss_pred CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHH
Confidence 4556789999999999998766543210 0247888886 5888
Q ss_pred HHHHc----Cccc---ee-ccccccCCCCCCccCeeeecccccc-cc--ccHHHHHHHhhhhccC--CeEEEEEcChhhH
Q 027609 109 IIYER----GLFG---LY-HDWCESFNTYPRTYDLLHADHLFST-IK--KSLKAVVAEVDRILRP--DGNLILRDDAETI 175 (221)
Q Consensus 109 ~a~eR----Gl~~---~~-~d~~e~f~~yp~sFDlVh~~~v~~h-~~--~d~~~vL~EmdRVLRP--GG~~ii~d~~~~~ 175 (221)
.|.++ |+.. .. .|..+ ++ .+.+||+|.|+-=+.. +. .+...+..+|.++||+ ||.+++-..++.+
T Consensus 272 ~Ar~Na~~~gl~~~i~~~~~D~~~-l~-~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~l 349 (385)
T 3ldu_A 272 IARENAEIAGVDEYIEFNVGDATQ-FK-SEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYEDF 349 (385)
T ss_dssp HHHHHHHHHTCGGGEEEEECCGGG-CC-CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCTTH
T ss_pred HHHHHHHHcCCCCceEEEECChhh-cC-cCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCHHH
Confidence 77765 4432 22 23222 22 3489999999755431 22 1567788889999987 8877766655443
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.3e-05 Score=70.55 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCCC------------
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTYP------------ 130 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~yp------------ 130 (221)
..+|||+|||+|+|+..|+.... .|+++|.+ .+++.|.+. |+.+ .+ .|..+.++.++
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~~---~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~ 290 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 290 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGSS---EEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSC
T ss_pred CCEEEEccCCCCHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccc
Confidence 36799999999999999988533 57888886 477766543 4422 22 22211111112
Q ss_pred ---CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhh--HHHHHHHHHhcCCeEEE---ee----cCCCe
Q 027609 131 ---RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAET--IVEVEDLVKSLHWDVRM---IY----TNDNQ 198 (221)
Q Consensus 131 ---~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~--~~~i~~i~~~l~W~~~~---~~----~~~~e 198 (221)
.+||+|.++-=. ..+..++.++|+|+|.+++..+++. ...++.+..+ |++.. .| +..=|
T Consensus 291 ~~~~~fD~Vv~dPPr-------~g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~~~--y~~~~~~~~D~FP~T~HvE 361 (369)
T 3bt7_A 291 LKSYQCETIFVDPPR-------SGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQT--HKVERLALFDQFPYTHHMQ 361 (369)
T ss_dssp GGGCCEEEEEECCCT-------TCCCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHH--EEEEEEEEECCSTTSSCCE
T ss_pred cccCCCCEEEECcCc-------cccHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhhC--cEEEEEEeeccCCCCCcEE
Confidence 279999765211 1234567788889999888877653 3444544433 66532 22 34456
Q ss_pred eEEEEEe
Q 027609 199 GMLCVHK 205 (221)
Q Consensus 199 ~~l~~~K 205 (221)
-+.+.+|
T Consensus 362 ~v~ll~r 368 (369)
T 3bt7_A 362 CGVLLTA 368 (369)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 6655544
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=6.8e-06 Score=75.16 Aligned_cols=93 Identities=16% Similarity=0.086 Sum_probs=62.6
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc-------------------Ccc--ceec-ccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER-------------------GLF--GLYH-DWCES 125 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR-------------------Gl~--~~~~-d~~e~ 125 (221)
...+|||+|||+|.++..++.+ +.. .|+.+|.+ ++++.+.+. |+. .+++ |..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~--~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAE--EVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCS--EEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCC--eEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence 4678999999999999998886 422 36778875 466655543 442 1222 32221
Q ss_pred CCCCCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 126 FNTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 126 f~~yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+...++.||+|.++- + - .+..++...-|.|||||.++++
T Consensus 125 ~~~~~~~fD~I~lDP-~---~-~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 125 MAERHRYFHFIDLDP-F---G-SPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp HHHSTTCEEEEEECC-S---S-CCHHHHHHHHHHEEEEEEEEEE
T ss_pred HHhccCCCCEEEeCC-C---C-CHHHHHHHHHHhcCCCCEEEEE
Confidence 111246899999653 2 2 3468888999999999999887
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.73 E-value=3.7e-05 Score=68.40 Aligned_cols=114 Identities=15% Similarity=0.088 Sum_probs=68.1
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC--CCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCC-C--CccC
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTY-P--RTYD 134 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~--~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~y-p--~sFD 134 (221)
.....+|||+|||+|+.+..|++. +. ..|+++|.+ .+++.+.++ |+.. ++ .|.. .+.+. + .+||
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~--g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~-~~~~~~~~~~~fD 176 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQ--GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFL-AVSPSDPRYHEVH 176 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGG-GSCTTCGGGTTEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChH-hcCccccccCCCC
Confidence 344679999999999999998874 21 146788876 467666554 5532 22 3432 23322 2 5799
Q ss_pred eeeec------ccccccc----------cc-------HHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHhc
Q 027609 135 LLHAD------HLFSTIK----------KS-------LKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKSL 185 (221)
Q Consensus 135 lVh~~------~v~~h~~----------~d-------~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~l 185 (221)
.|.++ .++..-+ ++ ...+|....+.|+ ||.++.+++. +.-+.++.+++..
T Consensus 177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~ 253 (309)
T 2b9e_A 177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQN 253 (309)
T ss_dssp EEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTS
T ss_pred EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhC
Confidence 99963 2222100 01 1246777888887 9999998653 3345566666543
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=1.9e-05 Score=72.81 Aligned_cols=94 Identities=14% Similarity=0.057 Sum_probs=63.7
Q ss_pred CCCeEEeecCcchHHHHHHhhC--CCeEEEeccCCCC-CCHHHHHHc----Cccc----ee-ccccccCC-CCCCccCee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESP-DTLPIIYER----GLFG----LY-HDWCESFN-TYPRTYDLL 136 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~--~v~vmnv~~~d~~-~~l~~a~eR----Gl~~----~~-~d~~e~f~-~yp~sFDlV 136 (221)
...+|||++||+|+|+-.++++ |+ -.|+.+|.+ +.++.+.+. |+.+ ++ .|..+-+. .+++.||+|
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V 129 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYV 129 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEE
Confidence 3678999999999999988874 43 257888875 455554443 4432 22 23222121 235789999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.++- +. .+..++...-+.|+|||+++++-
T Consensus 130 ~lDP----~g-~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 130 DLDP----FG-TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EECC----SS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECC----Cc-CHHHHHHHHHHHhCCCCEEEEEe
Confidence 9874 22 34678888999999999998873
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=4.8e-05 Score=74.42 Aligned_cols=126 Identities=14% Similarity=0.090 Sum_probs=73.3
Q ss_pred CCcccchhhhhhhHHHHHhhhhh---ccc--CCCCCCCeEEeecCcchHH---HHHHhhCCCeEEEeccCCCCC----CH
Q 027609 40 AAPEDFTADYQHWKNVVSKSYLN---GMG--INWSFVRNVMDMRAVYGGF---AAALKDLKVWVMNVVPIESPD----TL 107 (221)
Q Consensus 40 ~~~~~f~~d~~~W~~~v~~~Y~~---~L~--i~~~~~r~VLD~GcG~G~f---aa~L~~~~v~vmnv~~~d~~~----~l 107 (221)
.++|.|+.|.-.-..--+..+.. .+. =...+...|||+|||+|-+ +..-.+++..-+.|..++.+. ++
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~ 401 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTL 401 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHH
T ss_pred hhhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH
Confidence 46889999975543221111111 111 1223456799999999977 333333332233566766643 55
Q ss_pred HHHHHcCccc---eeccccccCCCCCCccCeeeecc--ccccccccHHHHHHHhhhhccCCeEEE
Q 027609 108 PIIYERGLFG---LYHDWCESFNTYPRTYDLLHADH--LFSTIKKSLKAVVAEVDRILRPDGNLI 167 (221)
Q Consensus 108 ~~a~eRGl~~---~~~d~~e~f~~yp~sFDlVh~~~--v~~h~~~d~~~vL~EmdRVLRPGG~~i 167 (221)
+...+.|+-+ +++.-.|.+ ..|...|+|.+-- .|-... ..-.+|.=.+|.|||||.++
T Consensus 402 ~~v~~N~~~dkVtVI~gd~eev-~LPEKVDIIVSEwMG~fLl~E-~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 402 ENWQFEEWGSQVTVVSSDMREW-VAPEKADIIVSELLGSFADNE-LSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHTTGGGEEEEESCTTTC-CCSSCEEEEECCCCBTTBGGG-CHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHhccCCCeEEEEeCcceec-cCCcccCEEEEEcCccccccc-CCHHHHHHHHHhcCCCcEEc
Confidence 5666667643 455333433 2578999999862 222222 23367888899999999875
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.71 E-value=2.6e-05 Score=71.51 Aligned_cols=107 Identities=12% Similarity=0.181 Sum_probs=67.2
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCe-------------------------------------EEEeccCCCC-CCHH
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVW-------------------------------------VMNVVPIESP-DTLP 108 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~-------------------------------------vmnv~~~d~~-~~l~ 108 (221)
.+.....|||.+||+|+|+...+..+.. -..++++|.+ .+++
T Consensus 198 ~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~ 277 (393)
T 3k0b_A 198 SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIE 277 (393)
T ss_dssp CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHH
Confidence 4556788999999999997655432110 0246888886 5888
Q ss_pred HHHHc----Cccc---ee-ccccccCCCCCCccCeeeecccccc-cc--ccHHHHHHHhhhhccC--CeEEEEEcChhhH
Q 027609 109 IIYER----GLFG---LY-HDWCESFNTYPRTYDLLHADHLFST-IK--KSLKAVVAEVDRILRP--DGNLILRDDAETI 175 (221)
Q Consensus 109 ~a~eR----Gl~~---~~-~d~~e~f~~yp~sFDlVh~~~v~~h-~~--~d~~~vL~EmdRVLRP--GG~~ii~d~~~~~ 175 (221)
.|.++ |+.+ .. .|..+ ++ .+.+||+|.|+-=+.. +. .+...+..+|-++||+ ||.+++-..++.+
T Consensus 278 ~Ar~Na~~~gl~~~I~~~~~D~~~-~~-~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~l 355 (393)
T 3k0b_A 278 IAKQNAVEAGLGDLITFRQLQVAD-FQ-TEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYELF 355 (393)
T ss_dssp HHHHHHHHTTCTTCSEEEECCGGG-CC-CCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCTTH
T ss_pred HHHHHHHHcCCCCceEEEECChHh-CC-CCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCHHH
Confidence 77665 4432 22 34322 22 3489999999844321 11 1456677888888887 8877666655443
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.59 E-value=6.1e-05 Score=69.00 Aligned_cols=106 Identities=13% Similarity=0.223 Sum_probs=67.5
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhC--CC-----------------------------------eEEEeccCCCC-CCHH
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDL--KV-----------------------------------WVMNVVPIESP-DTLP 108 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~--~v-----------------------------------~vmnv~~~d~~-~~l~ 108 (221)
.+.....|||.+||+|+|+...+.. +. .-..+.++|.+ .+++
T Consensus 191 ~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~ 270 (384)
T 3ldg_A 191 NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVE 270 (384)
T ss_dssp TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHH
Confidence 4556789999999999997655432 21 00246888886 5888
Q ss_pred HHHHc----Cccc---ee-ccccccCCCCCCccCeeeeccccc-ccc--ccHHHHHHHhhhhccC--CeEEEEEcChhh
Q 027609 109 IIYER----GLFG---LY-HDWCESFNTYPRTYDLLHADHLFS-TIK--KSLKAVVAEVDRILRP--DGNLILRDDAET 174 (221)
Q Consensus 109 ~a~eR----Gl~~---~~-~d~~e~f~~yp~sFDlVh~~~v~~-h~~--~d~~~vL~EmdRVLRP--GG~~ii~d~~~~ 174 (221)
.|.++ |+.+ .. .|..+ ++ .+.+||+|.|+-=+. .+. .+...+..+|-++||+ ||.+++-..+..
T Consensus 271 ~Ar~Na~~~gl~~~I~~~~~D~~~-l~-~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~ 347 (384)
T 3ldg_A 271 IARKNAREVGLEDVVKLKQMRLQD-FK-TNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDTD 347 (384)
T ss_dssp HHHHHHHHTTCTTTEEEEECCGGG-CC-CCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCTT
T ss_pred HHHHHHHHcCCCCceEEEECChHH-CC-ccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCHH
Confidence 77654 4432 22 24322 32 347999999984332 111 1567788888888887 887776666544
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=9.2e-05 Score=65.67 Aligned_cols=69 Identities=13% Similarity=0.048 Sum_probs=48.2
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----cccee-ccccccCCCCC-CccCeeeeccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LFGLY-HDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~~~~-~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
....+|||+|||+|.++..|++++. +|+++|.+ ++++.+.++- -+.++ .|. ..+ +++ .+||.|.++.-
T Consensus 49 ~~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~-l~~-~~~~~~fD~Iv~NlP 123 (295)
T 3gru_A 49 TKDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKELYNNIEIIWGDA-LKV-DLNKLDFNKVVANLP 123 (295)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHHCSSEEEEESCT-TTS-CGGGSCCSEEEEECC
T ss_pred CCcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhccCCCeEEEECch-hhC-CcccCCccEEEEeCc
Confidence 3467899999999999999999854 46788875 5888887761 12233 332 212 355 67999998854
Q ss_pred c
Q 027609 142 F 142 (221)
Q Consensus 142 ~ 142 (221)
+
T Consensus 124 y 124 (295)
T 3gru_A 124 Y 124 (295)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.50 E-value=3.5e-05 Score=66.74 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=46.1
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC--------CCHHHHHHc----Cc---cceec-cccccCCCCC--
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP--------DTLPIIYER----GL---FGLYH-DWCESFNTYP-- 130 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~--------~~l~~a~eR----Gl---~~~~~-d~~e~f~~yp-- 130 (221)
....+|||+|||+|.++..|+.++.. |+++|.+ ++++.+.++ |+ +.+++ |..+.++.++
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~~---V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGLT---VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTCC---EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCCE---EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 34578999999999999999998643 5677763 455555443 22 22332 3222122244
Q ss_pred -CccCeeeecccccc
Q 027609 131 -RTYDLLHADHLFST 144 (221)
Q Consensus 131 -~sFDlVh~~~v~~h 144 (221)
++||+|.++-.|.|
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 79999999877765
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00012 Score=69.76 Aligned_cols=138 Identities=10% Similarity=0.079 Sum_probs=82.2
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhC----CC-------------eEEEeccCCCC-CCHHHHHHc----Ccc-------c
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDL----KV-------------WVMNVVPIESP-DTLPIIYER----GLF-------G 117 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~----~v-------------~vmnv~~~d~~-~~l~~a~eR----Gl~-------~ 117 (221)
......+|||.+||+|+|...+.++ .. ...++.++|.. .++.+|..+ |+. .
T Consensus 166 ~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~ 245 (541)
T 2ar0_A 166 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA 245 (541)
T ss_dssp CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBS
T ss_pred ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCC
Confidence 3445678999999999998776543 10 01146777775 477777653 442 2
Q ss_pred eeccccccCCC--CC-CccCeeeecccccccc-------------ccHHHHHHHhhhhccCCeEEEEEcChhhH------
Q 027609 118 LYHDWCESFNT--YP-RTYDLLHADHLFSTIK-------------KSLKAVVAEVDRILRPDGNLILRDDAETI------ 175 (221)
Q Consensus 118 ~~~d~~e~f~~--yp-~sFDlVh~~~v~~h~~-------------~d~~~vL~EmdRVLRPGG~~ii~d~~~~~------ 175 (221)
+.+ +..|.. ++ ..||+|.++--|.... .....++..+.+.|||||.+++--++.++
T Consensus 246 I~~--gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~ 323 (541)
T 2ar0_A 246 IRL--GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG 323 (541)
T ss_dssp EEE--SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHH
T ss_pred eEe--CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHH
Confidence 222 122321 33 7899999986554322 11247899999999999999888766543
Q ss_pred HHHHHH-HHhcCCeEEEee-------cCCCeeEEEEEec
Q 027609 176 VEVEDL-VKSLHWDVRMIY-------TNDNQGMLCVHKT 206 (221)
Q Consensus 176 ~~i~~i-~~~l~W~~~~~~-------~~~~e~~l~~~K~ 206 (221)
.++.+. ++.-.....+.. +.-.--||+.+|.
T Consensus 324 ~~iR~~L~~~~~l~~ii~Lp~~~F~~t~v~t~Ilvl~k~ 362 (541)
T 2ar0_A 324 TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 362 (541)
T ss_dssp HHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEB
T ss_pred HHHHHHHhhcCCEEEEEEcCcCcccCCCCcEEEEEEECC
Confidence 345444 443333332221 1224567777763
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00011 Score=65.67 Aligned_cols=146 Identities=16% Similarity=0.214 Sum_probs=84.8
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHc------Cc-----cc-eecc
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYER------GL-----FG-LYHD 121 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eR------Gl-----~~-~~~d 121 (221)
.|.++|. ....+.++||=+|-|.|+.++.+++. ++..+.++.+|. ..++++++. |. .. .+.|
T Consensus 68 ~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~-~Vv~~a~~~lp~~~~~~~~dpRv~v~~~D 146 (294)
T 3o4f_A 68 IYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDA-GVVSFCRQYLPNHNAGSYDDPRFKLVIDD 146 (294)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCH-HHHHHHHHHCHHHHTTGGGCTTEEEEESC
T ss_pred HHHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCH-HHHHHHHhcCccccccccCCCcEEEEech
Confidence 4666654 23456899999999999999999887 454444555543 366666544 11 01 2334
Q ss_pred ccccCCCCCCccCeeeeccccccccc----cHHHHHHHhhhhccCCeEEEEEcCh-----hhHHHHHHHHHhcCCeEEEe
Q 027609 122 WCESFNTYPRTYDLLHADHLFSTIKK----SLKAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 122 ~~e~f~~yp~sFDlVh~~~v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d~~-----~~~~~i~~i~~~l~W~~~~~ 192 (221)
..+-+..-+++||+|.... +..... --..++..+.|+|+|||.++..-.. +.+..+.+.+++.-=.+...
T Consensus 147 g~~~l~~~~~~yDvIi~D~-~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~~ 225 (294)
T 3o4f_A 147 GVNFVNQTSQTFDVIISDC-TDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFY 225 (294)
T ss_dssp TTTTTSCSSCCEEEEEESC-CCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHhhccccCCEEEEeC-CCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCceeee
Confidence 3322222349999998763 221110 1257889999999999999986322 22222322233332233222
Q ss_pred e------cCCCeeEEEEEec
Q 027609 193 Y------TNDNQGMLCVHKT 206 (221)
Q Consensus 193 ~------~~~~e~~l~~~K~ 206 (221)
. ..+.-.+.+|.|+
T Consensus 226 ~~~vPty~~g~w~f~~as~~ 245 (294)
T 3o4f_A 226 QAAIPTYYGGIMTFAWATDN 245 (294)
T ss_dssp EECCTTSSSSCEEEEEEESC
T ss_pred eeeeccCCCcceeheeEECC
Confidence 1 2345678888875
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.40 E-value=4.5e-05 Score=70.91 Aligned_cols=130 Identities=14% Similarity=0.033 Sum_probs=75.9
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc------Cc--cceec-cccccCCCCC-CccCeeeec
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER------GL--FGLYH-DWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR------Gl--~~~~~-d~~e~f~~yp-~sFDlVh~~ 139 (221)
..+|||+|||+|.++.+|+..+. .|+++|.+ .+++.+.++ |+ +.+++ |..+.+..++ ++||+|.++
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 68999999999999999998864 46888886 588877766 55 22333 3322112123 689999985
Q ss_pred cccc-------cccccHHHHHHHhhhhccC-CeEEEEEcChhhHHHHHHHHHhcCCeEEEee---c-CCCeeEEEEEe
Q 027609 140 HLFS-------TIKKSLKAVVAEVDRILRP-DGNLILRDDAETIVEVEDLVKSLHWDVRMIY---T-NDNQGMLCVHK 205 (221)
Q Consensus 140 ~v~~-------h~~~d~~~vL~EmdRVLRP-GG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~---~-~~~e~~l~~~K 205 (221)
=-.. +..++...-+.++.++|+. +..+++.- .+.++ ++..++.+.|...++- . +=+|-+|++.+
T Consensus 171 PPrr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~-sP~ld-~~~~~~~l~~~~ev~~vSv~ge~kE~~l~~~~ 246 (410)
T 3ll7_A 171 PARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKL-SPMID-LWDTLQSLLHVQELHVVAAHGEVKELLVRMSL 246 (410)
T ss_dssp CEEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEE-CTTSC-HHHHHHHCSSEEEEEEEEETTEEEEEEEEECT
T ss_pred CCCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEc-CCCCC-hHHHHhhCCCCcEEEEEEeCCeEEEEEEEecC
Confidence 1111 1111334456666675554 44555543 33332 3444556677654432 1 12566666544
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00018 Score=62.93 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=45.2
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc---cceec-cccccCCCCC--CccCeeeecccc
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL---FGLYH-DWCESFNTYP--RTYDLLHADHLF 142 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl---~~~~~-d~~e~f~~yp--~sFDlVh~~~v~ 142 (221)
+|||+|||+|.++..|++++. +|+++|.+ ++++.+.++-- +.+++ |. ..+ +++ ..||.|.++--+
T Consensus 49 ~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~~~v~vi~~D~-l~~-~~~~~~~~~~iv~NlPy 120 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSGLPVRLVFQDA-LLY-PWEEVPQGSLLVANLPY 120 (271)
T ss_dssp CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTTSSEEEEESCG-GGS-CGGGSCTTEEEEEEECS
T ss_pred eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCCCCEEEEECCh-hhC-ChhhccCccEEEecCcc
Confidence 899999999999999999874 46888875 59998888721 12333 32 112 233 368888887433
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00071 Score=58.67 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=50.1
Q ss_pred ccccccCCCCCC----ccCeeeeccccccccccH----HHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEE
Q 027609 120 HDWCESFNTYPR----TYDLLHADHLFSTIKKSL----KAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 120 ~d~~e~f~~yp~----sFDlVh~~~v~~h~~~d~----~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~ 191 (221)
+|..+.++..+. .||+|... .|+.-. +| ..+|.+|.|+|||||.++.-.... .+.+-+..-..++..
T Consensus 157 GDa~~~l~~~~~~~~~~~D~iflD-~fsp~~-~p~lw~~~~l~~l~~~L~pGG~l~tysaa~---~vrr~L~~aGF~v~~ 231 (257)
T 2qy6_A 157 GDINELISQLDDSLNQKVDAWFLD-GFAPAK-NPDMWTQNLFNAMARLARPGGTLATFTSAG---FVRRGLQEAGFTMQK 231 (257)
T ss_dssp SCHHHHGGGSCGGGTTCEEEEEEC-SSCTTT-CGGGCCHHHHHHHHHHEEEEEEEEESCCBH---HHHHHHHHHTEEEEE
T ss_pred CcHHHHHhhcccccCCeEEEEEEC-CCCccc-ChhhcCHHHHHHHHHHcCCCcEEEEEeCCH---HHHHHHHHCCCEEEe
Confidence 454444444443 79999985 344211 21 579999999999999998643332 344445555666543
Q ss_pred ee-cCCCeeEEEEEec
Q 027609 192 IY-TNDNQGMLCVHKT 206 (221)
Q Consensus 192 ~~-~~~~e~~l~~~K~ 206 (221)
.. ...+..++.+.|+
T Consensus 232 ~~g~~~kr~m~~a~~~ 247 (257)
T 2qy6_A 232 RKGFGRKREMLCGVME 247 (257)
T ss_dssp ECCSTTCCCEEEEEEC
T ss_pred CCCCCCCCceEEEEec
Confidence 22 2235568888774
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.23 E-value=8.4e-05 Score=64.80 Aligned_cols=94 Identities=21% Similarity=0.229 Sum_probs=56.2
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-C-------HHHHHHc----C-c---cceecccccc-CCC
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-T-------LPIIYER----G-L---FGLYHDWCES-FNT 128 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~-------l~~a~eR----G-l---~~~~~d~~e~-f~~ 128 (221)
+..+...+|||++||+|.++..|+.++.. |+.+|.+. + ++.+.++ | + +.+++.-++. +..
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~g~~---V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~ 160 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh
Confidence 44433379999999999999999988754 57777653 3 2222111 1 1 2233322222 333
Q ss_pred CCCccCeeeeccccccccccHHHHHHHhhhhccCCe
Q 027609 129 YPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDG 164 (221)
Q Consensus 129 yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG 164 (221)
++.+||+|.++-.|.+-. ...++.+.-|+||+.+
T Consensus 161 ~~~~fDvV~lDP~y~~~~--~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 161 ITPRPQVVYLDPMFPHKQ--KSALVKKEMRVFQSLV 194 (258)
T ss_dssp CSSCCSEEEECCCCCCCC--C-----HHHHHHHHHS
T ss_pred CcccCCEEEEcCCCCCcc--cchHHHHHHHHHHHhh
Confidence 556799999997775432 2356777778998877
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0015 Score=65.81 Aligned_cols=106 Identities=8% Similarity=-0.031 Sum_probs=66.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCC--CeEEEeccCCCC-CCHHHHHH----------cCccc--eeccccccCCCCC-Ccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESP-DTLPIIYE----------RGLFG--LYHDWCESFNTYP-RTY 133 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~--v~vmnv~~~d~~-~~l~~a~e----------RGl~~--~~~d~~e~f~~yp-~sF 133 (221)
...+|||.+||+|+|+.+++++- ....++.++|.. .++++|.. +|+.. +.++-.......+ ..|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 36789999999999999988752 111246788875 47777722 22211 2222111111234 889
Q ss_pred Ceeeecccccc-cc--c-------------------------cHHHHHHHhhhhccCCeEEEEEcChhhH
Q 027609 134 DLLHADHLFST-IK--K-------------------------SLKAVVAEVDRILRPDGNLILRDDAETI 175 (221)
Q Consensus 134 DlVh~~~v~~h-~~--~-------------------------d~~~vL~EmdRVLRPGG~~ii~d~~~~~ 175 (221)
|+|.|+==+.. .. . -...++..+.+.|||||.+++--++.++
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~L 470 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYL 470 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHH
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHh
Confidence 99999743321 00 0 0234677899999999999888776665
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0018 Score=55.59 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=35.6
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
....+|||+|||+|.++..|++++.. +++++|.+ ++++.+.++
T Consensus 30 ~~~~~VLDiG~G~G~lt~~L~~~~~~--~v~avEid~~~~~~~~~~ 73 (249)
T 3ftd_A 30 EEGNTVVEVGGGTGNLTKVLLQHPLK--KLYVIELDREMVENLKSI 73 (249)
T ss_dssp CTTCEEEEEESCHHHHHHHHTTSCCS--EEEEECCCHHHHHHHTTS
T ss_pred CCcCEEEEEcCchHHHHHHHHHcCCC--eEEEEECCHHHHHHHHhc
Confidence 34678999999999999999998522 57888886 589988887
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00059 Score=60.35 Aligned_cols=125 Identities=14% Similarity=0.068 Sum_probs=67.6
Q ss_pred CCeEEeecCcchHHHHHHhhC-CCe--EEEeccCCCC--CCHHHHHHcC--cccee-c-cccccCCCCCCccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-KVW--VMNVVPIESP--DTLPIIYERG--LFGLY-H-DWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-~v~--vmnv~~~d~~--~~l~~a~eRG--l~~~~-~-d~~e~f~~yp~sFDlVh~~~v 141 (221)
..+|+|+||++|+++...+++ ++- ..-++++|.+ .+..+- .| ++.+. . |..+ + -+..||+|.|...
T Consensus 74 g~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~--~Gv~~i~~~~G~Df~~-~--~~~~~DvVLSDMA 148 (269)
T 2px2_A 74 IGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQS--YGWNIVTMKSGVDVFY-K--PSEISDTLLCDIG 148 (269)
T ss_dssp CEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCS--TTGGGEEEECSCCGGG-S--CCCCCSEEEECCC
T ss_pred CCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccC--CCceEEEeeccCCccC-C--CCCCCCEEEeCCC
Confidence 789999999999999999886 331 1234566631 121100 12 22222 2 4322 1 1478999999853
Q ss_pred cc-------cccccHHHHHHHhhhhccCCe-EEEEEcC----hhhH---HHHHHHHHhcCCeEEEee--cCCCeeEEEEE
Q 027609 142 FS-------TIKKSLKAVVAEVDRILRPDG-NLILRDD----AETI---VEVEDLVKSLHWDVRMIY--TNDNQGMLCVH 204 (221)
Q Consensus 142 ~~-------h~~~d~~~vL~EmdRVLRPGG-~~ii~d~----~~~~---~~i~~i~~~l~W~~~~~~--~~~~e~~l~~~ 204 (221)
=. |.. ... +|.=+.++|+||| .|++--- .++. +.++..+.+.. +..+- .++.|-+++|.
T Consensus 149 PnSG~~~vD~~R-s~~-aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~~vk--vk~paSR~~S~E~YlVa~ 224 (269)
T 2px2_A 149 ESSPSAEIEEQR-TLR-ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGL--VRVPLSRNSNHEMYWVSG 224 (269)
T ss_dssp CCCSCHHHHHHH-HHH-HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEE--ECCTTSCTTCCCEEEETT
T ss_pred CCCCccHHHHHH-HHH-HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHcCCEE--EECCCCCCCCccEEEEec
Confidence 32 111 122 4433349999999 8888732 3333 34444444433 11111 23467777764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00073 Score=66.32 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=64.7
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCC------C---------e--------------------------EEEeccCCCC-
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLK------V---------W--------------------------VMNVVPIESP- 104 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~------v---------~--------------------------vmnv~~~d~~- 104 (221)
.+.....|||.+||+|+|+...+... . | -..+.++|.+
T Consensus 187 ~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~ 266 (703)
T 3v97_A 187 GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDA 266 (703)
T ss_dssp TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCH
T ss_pred CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCH
Confidence 45557889999999999975544321 0 0 0246788886
Q ss_pred CCHHHHHHc----Cccc---e-eccccccCCCCC-CccCeeeecccccc-cc--ccHHHH---HHHhhhhccCCeEEEEE
Q 027609 105 DTLPIIYER----GLFG---L-YHDWCESFNTYP-RTYDLLHADHLFST-IK--KSLKAV---VAEVDRILRPDGNLILR 169 (221)
Q Consensus 105 ~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp-~sFDlVh~~~v~~h-~~--~d~~~v---L~EmdRVLRPGG~~ii~ 169 (221)
.+++.|.+. |+.+ + ..|..+-..+++ ++||+|.|+==+.. +. .+...+ |.|+-|.+.|||.+++-
T Consensus 267 ~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~il 346 (703)
T 3v97_A 267 RVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLF 346 (703)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 588777654 5533 2 234332112343 49999999833221 11 133344 44555555689999888
Q ss_pred cChhhHH
Q 027609 170 DDAETIV 176 (221)
Q Consensus 170 d~~~~~~ 176 (221)
..++.+.
T Consensus 347 t~~~~l~ 353 (703)
T 3v97_A 347 SASPDLL 353 (703)
T ss_dssp ESCHHHH
T ss_pred eCCHHHH
Confidence 7775544
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00093 Score=63.82 Aligned_cols=134 Identities=17% Similarity=0.132 Sum_probs=77.6
Q ss_pred eEEeecCcchHHHHHHhhC----C--C--------eEEEeccCCCC-CCHHHHHHc----Cccceec-cccccC--CCCC
Q 027609 73 NVMDMRAVYGGFAAALKDL----K--V--------WVMNVVPIESP-DTLPIIYER----GLFGLYH-DWCESF--NTYP 130 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~----~--v--------~vmnv~~~d~~-~~l~~a~eR----Gl~~~~~-d~~e~f--~~yp 130 (221)
+|||.+||+|+|...+.++ . . ...++.++|.. .++.+|..+ |+...++ -.+..| +.++
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~ 326 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHP 326 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCT
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcccc
Confidence 8999999999998776432 0 0 02478899885 477776643 4322110 001122 2245
Q ss_pred -CccCeeeecccccc--c-----------------------cc---cHHHHHHHhhhhccCCeEEEEEcChhh-------
Q 027609 131 -RTYDLLHADHLFST--I-----------------------KK---SLKAVVAEVDRILRPDGNLILRDDAET------- 174 (221)
Q Consensus 131 -~sFDlVh~~~v~~h--~-----------------------~~---d~~~vL~EmdRVLRPGG~~ii~d~~~~------- 174 (221)
..||+|.|+==|.. | +. .--.+|..+.+.|||||.+++--++.+
T Consensus 327 ~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~ 406 (544)
T 3khk_A 327 DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTNN 406 (544)
T ss_dssp TCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGGG
T ss_pred cccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcch
Confidence 89999999744431 1 11 112688999999999999877655433
Q ss_pred HHHHHHHHHhcCC-eEEEee-------cCCCeeEEEEEec
Q 027609 175 IVEVEDLVKSLHW-DVRMIY-------TNDNQGMLCVHKT 206 (221)
Q Consensus 175 ~~~i~~i~~~l~W-~~~~~~-------~~~~e~~l~~~K~ 206 (221)
..++.+.+-.-++ .+.+.. +.-.--||+.+|.
T Consensus 407 ~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~Ilvl~K~ 446 (544)
T 3khk_A 407 EGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKD 446 (544)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESC
T ss_pred HHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeEEEEEecC
Confidence 3456555444444 333321 1124456666664
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00039 Score=60.17 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=35.1
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
....+|||+|||+|.++..|++++. .|+++|.+ ++++.+.++
T Consensus 28 ~~~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~ 70 (255)
T 3tqs_A 28 QKTDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKK 70 (255)
T ss_dssp CTTCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHH
T ss_pred CCcCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHH
Confidence 3467999999999999999999863 56888886 588888776
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00068 Score=67.28 Aligned_cols=127 Identities=12% Similarity=-0.014 Sum_probs=69.6
Q ss_pred CCcccchhhhhhhHHHHHhhhhhccc-CC-CCCCCeEEeecCcchHHHH----HH--hh------CCCeEEEeccCCCCC
Q 027609 40 AAPEDFTADYQHWKNVVSKSYLNGMG-IN-WSFVRNVMDMRAVYGGFAA----AL--KD------LKVWVMNVVPIESPD 105 (221)
Q Consensus 40 ~~~~~f~~d~~~W~~~v~~~Y~~~L~-i~-~~~~r~VLD~GcG~G~faa----~L--~~------~~v~vmnv~~~d~~~ 105 (221)
.++|.|..|.-.-..--+..+...-. .. ..+...|||+|||+|-+.. +. ++ +......|.+++.+.
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp 456 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNP 456 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCH
T ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCCh
Confidence 35888998876543322211221111 11 1235679999999999842 11 12 011123567777652
Q ss_pred ----CHHHHHHcCc---cceeccccccCCCC------CCccCeeeeccccccc-cccHHHHHHHhhhhccCCeEEE
Q 027609 106 ----TLPIIYERGL---FGLYHDWCESFNTY------PRTYDLLHADHLFSTI-KKSLKAVVAEVDRILRPDGNLI 167 (221)
Q Consensus 106 ----~l~~a~eRGl---~~~~~d~~e~f~~y------p~sFDlVh~~~v~~h~-~~d~~~vL~EmdRVLRPGG~~i 167 (221)
+++.....|+ +-+++.-++.+. . |...|+|.+--+=.-. .+-....|.-++|.|||||.+|
T Consensus 457 ~A~~~l~~~~~Ng~~d~VtVI~gd~eev~-lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 457 NAIVTLKYMNVRTWKRRVTIIESDMRSLP-GIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHHHHHHHHHTTTTCSEEEESCGGGHH-HHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCchhhcc-cccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 3343344555 334453344332 3 6889999987332111 1123457888899999999876
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0044 Score=54.73 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=49.4
Q ss_pred cccccCCCCC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh---hhHHHHHHHHHhcCCeEEEe
Q 027609 121 DWCESFNTYP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA---ETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 121 d~~e~f~~yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~---~~~~~i~~i~~~l~W~~~~~ 192 (221)
+..+.++.++ .+||+||...- ++. .-...|..+.+.|+|||++++.|-. .....+.++.+...++..+.
T Consensus 197 da~etL~~~~~~~~d~vfIDaD--~y~-~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~~~~~i~~~i~ 269 (282)
T 2wk1_A 197 WFKDTLPTAPIDTLAVLRMDGD--LYE-STWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYRAKFDIADELI 269 (282)
T ss_dssp CHHHHSTTCCCCCEEEEEECCC--SHH-HHHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHHHHTTCCSCCE
T ss_pred CHHHHHhhCCCCCEEEEEEcCC--ccc-cHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 4444566676 89999998852 344 3457888899999999999998853 24556677777777776543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0016 Score=58.98 Aligned_cols=130 Identities=13% Similarity=0.202 Sum_probs=70.5
Q ss_pred CCCCCCCeEEeecC------cchHHHHH-HhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCC-CccCeee
Q 027609 66 INWSFVRNVMDMRA------VYGGFAAA-LKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~Gc------G~G~faa~-L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh 137 (221)
+.--...+|||+|| .+|++... +...+.. |+.+|..++.. ..... +..| |..+ +. +.||+|.
T Consensus 105 ~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~---VVavDL~~~~s---da~~~-IqGD-~~~~--~~~~k~DLVI 174 (344)
T 3r24_A 105 LAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTL---LVDSDLNDFVS---DADST-LIGD-CATV--HTANKWDLII 174 (344)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCE---EEEEESSCCBC---SSSEE-EESC-GGGE--EESSCEEEEE
T ss_pred EeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcE---EEEeeCccccc---CCCeE-EEcc-cccc--ccCCCCCEEE
Confidence 44445899999996 89996444 3233333 35555543322 11111 4455 3322 23 8899998
Q ss_pred eccccc---ccc-----c-cHHHHHHHhh-hhccCCeEEEEEcChhh-HHHHHHHHHhcCCeEEEee---cCCCeeEEEE
Q 027609 138 ADHLFS---TIK-----K-SLKAVVAEVD-RILRPDGNLILRDDAET-IVEVEDLVKSLHWDVRMIY---TNDNQGMLCV 203 (221)
Q Consensus 138 ~~~v~~---h~~-----~-d~~~vL~Emd-RVLRPGG~~ii~d~~~~-~~~i~~i~~~l~W~~~~~~---~~~~e~~l~~ 203 (221)
+...=. +.. . .......|+. ++|+|||.|++--...- -+.+.++.+...+-..... .++.|.+|++
T Consensus 175 SDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~~lrk~F~~VK~fK~ASRa~SsEvYLVG 254 (344)
T 3r24_A 175 SDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIG 254 (344)
T ss_dssp ECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGGGTTSSCEEEEE
T ss_pred ecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHHHHHhhCCeEEEECCCCCCCCeeEEEEe
Confidence 764321 100 1 3555556654 58999999999832211 1234444443332222222 3468999999
Q ss_pred Ee
Q 027609 204 HK 205 (221)
Q Consensus 204 ~K 205 (221)
+.
T Consensus 255 ~g 256 (344)
T 3r24_A 255 AN 256 (344)
T ss_dssp EE
T ss_pred ee
Confidence 76
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0055 Score=56.52 Aligned_cols=146 Identities=17% Similarity=0.203 Sum_probs=81.5
Q ss_pred hhhhccc---CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccc---------------e-e
Q 027609 59 SYLNGMG---INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFG---------------L-Y 119 (221)
Q Consensus 59 ~Y~~~L~---i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~---------------~-~ 119 (221)
.|.++|- +...+.++||=+|.|.|+.++++++.+...+.++.+|. ..++++++- ++. + +
T Consensus 191 ~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp-~VVe~ar~y-fp~~~~~~~d~pr~~rv~vii 268 (381)
T 3c6k_A 191 AYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQ-MVIDGCKKY-MRKTCGDVLDNLKGDCYQVLI 268 (381)
T ss_dssp HHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCH-HHHHHHHHH-CCC----CCSSSEETTEEEEE
T ss_pred HHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCH-HHHHHHHhh-chhhhhhhhccccccceeeeh
Confidence 3555443 22334689999999999999999988764434444442 377777664 211 1 1
Q ss_pred ccccccCCCC---CCccCeeeeccccccccc-c---------HHHHHHHhhhhccCCeEEEEEcC----hhhHHHHHHHH
Q 027609 120 HDWCESFNTY---PRTYDLLHADHLFSTIKK-S---------LKAVVAEVDRILRPDGNLILRDD----AETIVEVEDLV 182 (221)
Q Consensus 120 ~d~~e~f~~y---p~sFDlVh~~~v~~h~~~-d---------~~~vL~EmdRVLRPGG~~ii~d~----~~~~~~i~~i~ 182 (221)
.|..+-+..+ .+.||+|... ++..... + -..++..+.|+|+|||.++..-. .+....+.+.+
T Consensus 269 ~Da~~fl~~~~~~~~~yDvIIvD-l~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl 347 (381)
T 3c6k_A 269 EDCIPVLKRYAKEGREFDYVIND-LTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQL 347 (381)
T ss_dssp SCHHHHHHHHHHHTCCEEEEEEE-CCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhccCceeEEEEC-CCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHH
Confidence 1211000001 1579999976 3321110 1 24667889999999999997532 22334455555
Q ss_pred HhcCCeEEEe--e----c-CCCeeEEEEEecc
Q 027609 183 KSLHWDVRMI--Y----T-NDNQGMLCVHKTY 207 (221)
Q Consensus 183 ~~l~W~~~~~--~----~-~~~e~~l~~~K~~ 207 (221)
+++--.+... . + .+.=.+.+|.|++
T Consensus 348 ~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~~ 379 (381)
T 3c6k_A 348 GRLYCPVEFSKEIVCVPSYLELWVFYTVWKKA 379 (381)
T ss_dssp TTSSSCEEEEEEEECCGGGSSCEEEEEEEECC
T ss_pred HHhCCcceEeeEEEEecCCCCceeeeEEECCC
Confidence 5553333211 0 1 1234667777754
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.012 Score=56.16 Aligned_cols=117 Identities=11% Similarity=0.007 Sum_probs=70.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCC--CeEEEeccCCCC-CCHHHHHH----cCcc----ceeccccccCC----CCC-Cc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESP-DTLPIIYE----RGLF----GLYHDWCESFN----TYP-RT 132 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~--v~vmnv~~~d~~-~~l~~a~e----RGl~----~~~~d~~e~f~----~yp-~s 132 (221)
....+|||.+||+|+|...+.++= ....++.++|.. .+..+|.. +|+. .+.+ +..|. .++ ..
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~--gDtL~~d~p~~~~~~ 297 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHN--ADTLDEDWPTQEPTN 297 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE--SCTTTSCSCCSSCCC
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEe--cceeccccccccccc
Confidence 357799999999999987765540 012257788875 46666654 4542 1222 11222 244 78
Q ss_pred cCeeeeccccc-cc------------------cc---cHHHHHHHhhhhcc-CCeEEEEEcChhhH------HHHHHHHH
Q 027609 133 YDLLHADHLFS-TI------------------KK---SLKAVVAEVDRILR-PDGNLILRDDAETI------VEVEDLVK 183 (221)
Q Consensus 133 FDlVh~~~v~~-h~------------------~~---d~~~vL~EmdRVLR-PGG~~ii~d~~~~~------~~i~~i~~ 183 (221)
||+|.++==|. .+ +. .--.++..+.+.|+ |||.+++--++.++ .++.+.+-
T Consensus 298 fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Ll 377 (542)
T 3lkd_A 298 FDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALL 377 (542)
T ss_dssp BSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHH
T ss_pred ccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHH
Confidence 99999872221 01 00 11248999999999 99999777665543 44655544
Q ss_pred hcCC
Q 027609 184 SLHW 187 (221)
Q Consensus 184 ~l~W 187 (221)
.-++
T Consensus 378 e~~~ 381 (542)
T 3lkd_A 378 EEGA 381 (542)
T ss_dssp HTTC
T ss_pred hCCc
Confidence 3344
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00054 Score=60.04 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=34.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCe-EEEeccCCCC-CCHHHHHHc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVW-VMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~-vmnv~~~d~~-~~l~~a~eR 113 (221)
...+|||+|||+|.++..|++++.. -.+|+++|.+ ++++.+.++
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~ 87 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR 87 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH
T ss_pred CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh
Confidence 4679999999999999999987432 0126788876 599988887
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0017 Score=54.86 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=25.5
Q ss_pred CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 131 RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++||+|....-+ ....+.+.-+.|||||.+++.+
T Consensus 121 ~~fDlIfIDg~k------~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 121 RHPDVVLVDGRF------RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp CCCSEEEECSSS------HHHHHHHHHHHCSSCEEEEETT
T ss_pred CCCCEEEEeCCC------chhHHHHHHHhcCCCeEEEEeC
Confidence 789999987532 2355555669999999997765
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0007 Score=60.07 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=34.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
...+|||+|||+|+++.+|+++.- ...|+++|.+ ++++.+.++
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~ 69 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEK 69 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHH
Confidence 467999999999999999988721 1257899986 599988876
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0039 Score=56.81 Aligned_cols=104 Identities=17% Similarity=0.123 Sum_probs=63.1
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHH---HHHHc-Ccc------c---eeccccccCCCC-C
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLP---IIYER-GLF------G---LYHDWCESFNTY-P 130 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~---~a~eR-Gl~------~---~~~d~~e~f~~y-p 130 (221)
++.....+||||-||+||=+.+|++.+-. ..|+..|.+. -++ -..+| |.. . ..+| +..+..+ +
T Consensus 144 L~~~pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D-~~~~~~~~~ 221 (359)
T 4fzv_A 144 LGLQPGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWD-GRKWGELEG 221 (359)
T ss_dssp HCCCTTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCC-GGGHHHHST
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCc-hhhcchhcc
Confidence 44555789999999999999999887532 3577888752 222 22222 221 1 1223 1222223 4
Q ss_pred CccCeeeec----cc----cc-------cccc--------cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 131 RTYDLLHAD----HL----FS-------TIKK--------SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 131 ~sFDlVh~~----~v----~~-------h~~~--------d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++||.|.+. .. +. .+.. --..+|...-+.|||||.+|.+++
T Consensus 222 ~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTC 285 (359)
T 4fzv_A 222 DTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTC 285 (359)
T ss_dssp TCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred ccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Confidence 899999843 21 11 1110 113567778899999999999965
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0027 Score=54.69 Aligned_cols=41 Identities=7% Similarity=0.014 Sum_probs=31.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
...+|||+|||+|.++. |.. +.. ..|+++|.+ ++++.+.++
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~~-~~~-~~v~avEid~~~~~~a~~~ 62 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PVG-ERL-DQLTVIELDRDLAARLQTH 62 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HHH-TTC-SCEEEECCCHHHHHHHHTC
T ss_pred CcCEEEEECCCCcHHHH-hhh-CCC-CeEEEEECCHHHHHHHHHH
Confidence 46789999999999999 754 322 026888886 599988887
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.037 Score=49.93 Aligned_cols=96 Identities=16% Similarity=0.069 Sum_probs=53.1
Q ss_pred CCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-------CCHHHHHHcCccceec--cccccCCCCCCccCeeeecc
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-------DTLPIIYERGLFGLYH--DWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-------~~l~~a~eRGl~~~~~--d~~e~f~~yp~sFDlVh~~~ 140 (221)
..+|||+||++|+|+.+.+.. ++. .|.++|.- .+.+-.--. ++-... |. ..++ |..+|+|.|+-
T Consensus 95 ~~~VlDLGaapGGwsq~~~~~~gv~--~V~avdvG~~~he~P~~~~ql~w~-lV~~~~~~Dv-~~l~--~~~~D~ivcDi 168 (321)
T 3lkz_A 95 VGKVIDLGCGRGGWCYYMATQKRVQ--EVRGYTKGGPGHEEPQLVQSYGWN-IVTMKSGVDV-FYRP--SECCDTLLCDI 168 (321)
T ss_dssp CEEEEEETCTTCHHHHHHTTCTTEE--EEEEECCCSTTSCCCCCCCBTTGG-GEEEECSCCT-TSSC--CCCCSEEEECC
T ss_pred CCEEEEeCCCCCcHHHHHHhhcCCC--EEEEEEcCCCCccCcchhhhcCCc-ceEEEeccCH-hhCC--CCCCCEEEEEC
Confidence 449999999999999966655 543 56666651 111100001 111111 11 1122 36699999985
Q ss_pred ccccccc---cHHH---HHHHhhhhccCC-eEEEEEcChh
Q 027609 141 LFSTIKK---SLKA---VVAEVDRILRPD-GNLILRDDAE 173 (221)
Q Consensus 141 v~~h~~~---d~~~---vL~EmdRVLRPG-G~~ii~d~~~ 173 (221)
--+ -+. +-+. +|.=+.+.|++| |-|++---.+
T Consensus 169 geS-s~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 169 GES-SSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp CCC-CSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred ccC-CCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 422 110 1112 343346788999 9999985444
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0078 Score=66.59 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=41.3
Q ss_pred CCeEEeecCcchHHHHHHhh----CCCeEEEeccCCCC-CCHHHHHHcCcc--ceec---cccccCCCC-CCccCeeeec
Q 027609 71 VRNVMDMRAVYGGFAAALKD----LKVWVMNVVPIESP-DTLPIIYERGLF--GLYH---DWCESFNTY-PRTYDLLHAD 139 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~----~~v~vmnv~~~d~~-~~l~~a~eRGl~--~~~~---d~~e~f~~y-p~sFDlVh~~ 139 (221)
..+||.+|+|+|+.+..+.+ .+....+.+-.|.+ ...+.+.++ +- .+-. |..+ ..+| +.+||+|.++
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~-f~~~di~~~~~d~~~-~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAK-LEQLHVTQGQWDPAN-PAPGSLGKADLLVCN 1318 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTT-HHHHTEEEECCCSSC-CCC-----CCEEEEE
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHH-hhhcccccccccccc-cccCCCCceeEEEEc
Confidence 56899999999986554322 12112244444543 233333333 11 1111 1101 1123 4889999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.+++-.. +....|..+.++|||||++++.+..
T Consensus 1319 ~vl~~t~-~~~~~l~~~~~lL~p~G~l~~~e~~ 1350 (2512)
T 2vz8_A 1319 CALATLG-DPAVAVGNMAATLKEGGFLLLHTLL 1350 (2512)
T ss_dssp CC---------------------CCEEEEEEC-
T ss_pred ccccccc-cHHHHHHHHHHhcCCCcEEEEEecc
Confidence 9997555 8899999999999999999998643
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.027 Score=48.94 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=42.7
Q ss_pred ccccccCCCCC-CccCeeeeccccc---cc----------------cccHHHHHHHhhhhccCCeEEEEEcCh-------
Q 027609 120 HDWCESFNTYP-RTYDLLHADHLFS---TI----------------KKSLKAVVAEVDRILRPDGNLILRDDA------- 172 (221)
Q Consensus 120 ~d~~e~f~~yp-~sFDlVh~~~v~~---h~----------------~~d~~~vL~EmdRVLRPGG~~ii~d~~------- 172 (221)
.|+.+.+..++ ++||+|.++==+. .+ ......++.|+.|+|||||.+++.-..
T Consensus 27 gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~~~~~~ 106 (297)
T 2zig_A 27 GDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVAVARRR 106 (297)
T ss_dssp SCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEEEECC-
T ss_pred CcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCcccccc
Confidence 34444344456 7888888762221 11 113456889999999999999776321
Q ss_pred -------hhHHHHHHHHHhcCCeE
Q 027609 173 -------ETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 173 -------~~~~~i~~i~~~l~W~~ 189 (221)
+....+..+++...|..
T Consensus 107 ~g~~~~~~~~~~l~~~~~~~Gf~~ 130 (297)
T 2zig_A 107 FGRHLVFPLHADIQVRCRKLGFDN 130 (297)
T ss_dssp ---EEEECHHHHHHHHHHHTTCEE
T ss_pred CCcccccccHHHHHHHHHHcCCee
Confidence 12345666777777654
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.017 Score=47.12 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=54.5
Q ss_pred hhhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcch-HHHHHHhh-CCCeEEEeccCCCC-CCHHHHHHcCccceeccc
Q 027609 46 TADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYG-GFAAALKD-LKVWVMNVVPIESP-DTLPIIYERGLFGLYHDW 122 (221)
Q Consensus 46 ~~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G-~faa~L~~-~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~ 122 (221)
...++.|...+. |...- ... ..+|||+|||+| ..|..|++ .++ +|+.+|.+ ..++ .+..|
T Consensus 16 ~~~~~m~e~Lae--YI~~~-~~~--~~rVlEVG~G~g~~vA~~La~~~g~---~V~atDInp~Av~--------~v~dD- 78 (153)
T 2k4m_A 16 PRGSHMWNDLAV--YIIRC-SGP--GTRVVEVGAGRFLYVSDYIRKHSKV---DLVLTDIKPSHGG--------IVRDD- 78 (153)
T ss_dssp CCCCHHHHHHHH--HHHHH-SCS--SSEEEEETCTTCCHHHHHHHHHSCC---EEEEECSSCSSTT--------EECCC-
T ss_pred cchhhHHHHHHH--HHHhc-CCC--CCcEEEEccCCChHHHHHHHHhCCC---eEEEEECCccccc--------eEEcc-
Confidence 344566877773 54211 112 458999999999 69999997 775 45777764 3444 12233
Q ss_pred cccCCCCC---CccCeeeeccccccccccHHHHHHHhhh
Q 027609 123 CESFNTYP---RTYDLLHADHLFSTIKKSLKAVVAEVDR 158 (221)
Q Consensus 123 ~e~f~~yp---~sFDlVh~~~v~~h~~~d~~~vL~EmdR 158 (221)
-|.+.. ..||+|++-+. +.+++..+.++.+
T Consensus 79 --iF~P~~~~Y~~~DLIYsirP----P~El~~~i~~lA~ 111 (153)
T 2k4m_A 79 --ITSPRMEIYRGAALIYSIRP----PAEIHSSLMRVAD 111 (153)
T ss_dssp --SSSCCHHHHTTEEEEEEESC----CTTTHHHHHHHHH
T ss_pred --CCCCcccccCCcCEEEEcCC----CHHHHHHHHHHHH
Confidence 355443 48999987432 1155555655544
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.012 Score=51.04 Aligned_cols=42 Identities=19% Similarity=0.003 Sum_probs=35.0
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
.....|||.+||+|+++.+++..|. +++++|.+ ++++++.+|
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~---~~~g~e~~~~~~~~a~~r 276 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR---RALGVELVPRYAQLAKER 276 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHH
Confidence 4567899999999999999988875 46788876 588888887
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.05 Score=48.01 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=29.9
Q ss_pred cHHHHHHHhhhhccCCeEEEEEcCh-----------hhHHHHHHHHHhcCCeE
Q 027609 148 SLKAVVAEVDRILRPDGNLILRDDA-----------ETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~d~~-----------~~~~~i~~i~~~l~W~~ 189 (221)
....+|.|+.|+|||||.+++.-.. ..+..+..++....|..
T Consensus 62 ~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~~~~~~~~~i~~~~~~~Gf~~ 114 (323)
T 1boo_A 62 WFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFL 114 (323)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEECCCEETTEEEECCHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHCcCCcEEEEEECCEecCCCcccccchHHHHHHHHHhCCCEE
Confidence 5788999999999999999886222 12444555566666664
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.2 Score=44.11 Aligned_cols=91 Identities=20% Similarity=0.139 Sum_probs=51.3
Q ss_pred CCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-------CCHHHHHHcCccce-ec---cccccCCCCCCccCeeee
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-------DTLPIIYERGLFGL-YH---DWCESFNTYPRTYDLLHA 138 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-------~~l~~a~eRGl~~~-~~---d~~e~f~~yp~sFDlVh~ 138 (221)
..+|||+||++|+|+...+.+ ++. .|.++|.- .+. ...|-..+ .. |. ..++ |..+|.|.|
T Consensus 79 g~~VvDLGaapGGWSq~~a~~~g~~--~V~avdvG~~ghe~P~~~---~s~gwn~v~fk~gvDv-~~~~--~~~~Dtllc 150 (267)
T 3p8z_A 79 EGRVIDLGCGRGGWSYYCAGLKKVT--EVRGYTKGGPGHEEPVPM---STYGWNIVKLMSGKDV-FYLP--PEKCDTLLC 150 (267)
T ss_dssp CEEEEEESCTTSHHHHHHHTSTTEE--EEEEECCCSTTSCCCCCC---CCTTTTSEEEECSCCG-GGCC--CCCCSEEEE
T ss_pred CCEEEEcCCCCCcHHHHHHHhcCCC--EEEEEecCCCCccCcchh---hhcCcCceEEEeccce-eecC--CccccEEEE
Confidence 559999999999999966655 443 56666641 121 12332211 11 21 1233 366999999
Q ss_pred cccccccc-c-cHHH---HHHHhhhhccCCeEEEEEc
Q 027609 139 DHLFSTIK-K-SLKA---VVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 139 ~~v~~h~~-~-d~~~---vL~EmdRVLRPGG~~ii~d 170 (221)
+--=+.=. . +-+. +|.=+.+.|++ |.|++--
T Consensus 151 DIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KV 186 (267)
T 3p8z_A 151 DIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKV 186 (267)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEE
T ss_pred ecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEE
Confidence 84432111 0 1112 34334678898 7888873
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.77 E-value=0.41 Score=43.11 Aligned_cols=92 Identities=16% Similarity=0.263 Sum_probs=58.3
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCC--C-CCHHH-HHHcCccce-eccccccCCCCCCccCeeeeccccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIES--P-DTLPI-IYERGLFGL-YHDWCESFNTYPRTYDLLHADHLFSTI 145 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~--~-~~l~~-a~eRGl~~~-~~d~~e~f~~yp~sFDlVh~~~v~~h~ 145 (221)
..+||.+|.++|.++-+|...+++.+ .|. + ..++. ....|+.+. ++ +.....+.+..||+|.-. +
T Consensus 39 ~~~~~~~~d~~gal~~~~~~~~~~~~----~ds~~~~~~~~~n~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~-----l 108 (375)
T 4dcm_A 39 RGPVLILNDAFGALSCALAEHKPYSI----GDSYISELATRENLRLNGIDESSVK-FLDSTADYPQQPGVVLIK-----V 108 (375)
T ss_dssp CSCEEEECCSSSHHHHHTGGGCCEEE----ESCHHHHHHHHHHHHHTTCCGGGSE-EEETTSCCCSSCSEEEEE-----C
T ss_pred CCCEEEECCCCCHHHHhhccCCceEE----EhHHHHHHHHHHHHHHcCCCccceE-ecccccccccCCCEEEEE-----c
Confidence 35799999999999999987776543 232 1 12222 222345331 11 112233457899987753 3
Q ss_pred cc---cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 146 KK---SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 146 ~~---d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+. .....|.++...|+||+.+++....
T Consensus 109 pk~~~~l~~~L~~l~~~l~~~~~i~~~g~~ 138 (375)
T 4dcm_A 109 PKTLALLEQQLRALRKVVTSDTRIIAGAKA 138 (375)
T ss_dssp CSCHHHHHHHHHHHHTTCCTTSEEEEEEEG
T ss_pred CCCHHHHHHHHHHHHhhCCCCCEEEEEecc
Confidence 33 5667788888899999999877543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=90.34 E-value=0.24 Score=43.87 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=28.4
Q ss_pred CccCeeeecccc----------ccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 131 RTYDLLHADHLF----------STIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 131 ~sFDlVh~~~v~----------~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++||+|.++==+ ..|......+|.|+.|+|+|||.+++.-.
T Consensus 57 ~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 57 DSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 107 (319)
T ss_dssp TCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 677777665111 11222467889999999999999998743
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=89.43 E-value=5.2 Score=35.28 Aligned_cols=114 Identities=19% Similarity=0.247 Sum_probs=61.0
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHcCccce-eccccccCCCCC-CccCeeeec---ccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGLFGL-YHDWCESFNTYP-RTYDLLHAD---HLFST 144 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eRGl~~~-~~d~~e~f~~yp-~sFDlVh~~---~v~~h 144 (221)
..+|+|+-||.|+++..+...|..+ +..+|... .++..... .... ..|..+ +..-. ..+|+|+++ +-|+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~--v~~~e~d~~a~~t~~~N-~~~~~~~Di~~-~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAEC--VYSNEWDKYAQEVYEMN-FGEKPEGDITQ-VNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEE--EEEECCCHHHHHHHHHH-HSCCCBSCGGG-SCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeE--EEEEeCCHHHHHHHHHH-cCCCCcCCHHH-cCHhhCCCCCEEEECCCCCCcch
Confidence 4689999999999999999998654 44555532 33322222 2111 233222 22111 358999876 23331
Q ss_pred cc-----ccHH-HHHHHhhhh---ccCCeEEEEEcCh---------hhHHHHHHHHHhcCCeEE
Q 027609 145 IK-----KSLK-AVVAEVDRI---LRPDGNLILRDDA---------ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 145 ~~-----~d~~-~vL~EmdRV---LRPGG~~ii~d~~---------~~~~~i~~i~~~l~W~~~ 190 (221)
.- +|+. .++.|+-|+ +||- +++-|.. ...+.+.+.+.++.+.+.
T Consensus 87 ag~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~ 148 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFH 148 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCE
T ss_pred hcccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEE
Confidence 10 1221 245555555 5785 4444332 234556666677776553
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=89.25 E-value=1.9 Score=38.44 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=55.6
Q ss_pred ccccccCCCCC-CccCeeeeccccccccccH----HHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEee-
Q 027609 120 HDWCESFNTYP-RTYDLLHADHLFSTIKKSL----KAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY- 193 (221)
Q Consensus 120 ~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d~----~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~- 193 (221)
+|..+.++.++ ..||++.-. -|+.-. || ..++..|.|.++|||.++-=... ..|++-++.-.+.+....
T Consensus 173 GDa~~~l~~l~~~~~Da~flD-gFsP~k-NPeLWs~e~f~~l~~~~~pgg~laTYtaa---g~VRR~L~~aGF~V~k~~G 247 (308)
T 3vyw_A 173 GDARKRIKEVENFKADAVFHD-AFSPYK-NPELWTLDFLSLIKERIDEKGYWVSYSSS---LSVRKSLLTLGFKVGSSRE 247 (308)
T ss_dssp SCHHHHGGGCCSCCEEEEEEC-CSCTTT-SGGGGSHHHHHHHHTTEEEEEEEEESCCC---HHHHHHHHHTTCEEEEEEC
T ss_pred chHHHHHhhhcccceeEEEeC-CCCccc-CcccCCHHHHHHHHHHhCCCcEEEEEeCc---HHHHHHHHHCCCEEEecCC
Confidence 45444455566 579998875 466323 44 58999999999999999854443 456677888889886543
Q ss_pred cCCCeeEEEEEec
Q 027609 194 TNDNQGMLCVHKT 206 (221)
Q Consensus 194 ~~~~e~~l~~~K~ 206 (221)
-..+...+++.++
T Consensus 248 ~g~KReml~A~~~ 260 (308)
T 3vyw_A 248 IGRKRKGTVASLK 260 (308)
T ss_dssp C---CEEEEEESS
T ss_pred CCCCCceeEEecC
Confidence 2345568888865
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=89.20 E-value=0.86 Score=39.03 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=54.3
Q ss_pred CCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCCCccCeeeeccccccccc
Q 027609 70 FVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK 147 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~ 147 (221)
...+||=.|||. |.++..|++. |+.+ +.++.++-++.+.+-|...++.| .+.+ ++.||+|.-. . -
T Consensus 142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~V---i~~~~~~~~~~~~~lGa~~v~~d-~~~v---~~g~Dvv~d~--~---g- 208 (315)
T 3goh_A 142 KQREVLIVGFGAVNNLLTQMLNNAGYVV---DLVSASLSQALAAKRGVRHLYRE-PSQV---TQKYFAIFDA--V---N- 208 (315)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEE---EEECSSCCHHHHHHHTEEEEESS-GGGC---CSCEEEEECC--------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEE---EEEEChhhHHHHHHcCCCEEEcC-HHHh---CCCccEEEEC--C---C-
Confidence 478899999964 6666667654 6644 44444457888888776545544 3333 6778887643 1 1
Q ss_pred cHHHHHHHhhhhccCCeEEEEE
Q 027609 148 SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
...+.+.-+.|||||.+++-
T Consensus 209 --~~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 209 --SQNAAALVPSLKANGHIICI 228 (315)
T ss_dssp -------TTGGGEEEEEEEEEE
T ss_pred --chhHHHHHHHhcCCCEEEEE
Confidence 12236778999999999876
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=88.23 E-value=0.26 Score=43.69 Aligned_cols=42 Identities=10% Similarity=-0.011 Sum_probs=30.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE 112 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e 112 (221)
......++|.+||.|+.+.+|++++. .|+++|.. ++++.+.+
T Consensus 20 ~~~gg~~VD~T~G~GGHS~~il~~~g---~VigiD~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 20 VRPGGVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKG 62 (285)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHCCC---EEEEEeCCHHHHHHHHh
Confidence 33466899999999999999999843 45777764 36555543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.53 E-value=1 Score=38.00 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=38.6
Q ss_pred cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEE--e-e------------cCCCeeEEEEEec
Q 027609 148 SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM--I-Y------------TNDNQGMLCVHKT 206 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~--~-~------------~~~~e~~l~~~K~ 206 (221)
....+|.|+.|+|+|||.+++.-.......+..++....|...- . . ....|-+|++.|.
T Consensus 52 ~~~~~l~~~~~~Lk~~g~i~v~~~d~~~~~~~~~~~~~gf~~~~~iiW~K~~~~~~~~~~~~~~hE~Il~~~K~ 125 (260)
T 1g60_A 52 FTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMGSAKRRFSTGQETILFFSKS 125 (260)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHTTCEEEEEEEECCCCSCCCCSSSCBCCCEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcCcHHHHHHHHHHHhhccceeEEEEEEecCCCccccCccccCCcEEEEEEeC
Confidence 45788999999999999999884333344444445555554421 1 0 1235889999886
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=87.22 E-value=1.8 Score=38.97 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=63.1
Q ss_pred CCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCCCC-HHHHHHcCccceeccccccCCCCCCccCeeeeccccccccc-
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDT-LPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK- 147 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~~-l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~- 147 (221)
..+||++|-+.|.++.+|..+ .+++ +..+.. ......+|+.....+ +..+.|..||+|..- ++.
T Consensus 46 ~~~~l~~n~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~d~v~~~-----~Pk~ 112 (381)
T 3dmg_A 46 GERALDLNPGVGWGSLPLEGRMAVER-----LETSRAAFRCLTASGLQARLAL---PWEAAAGAYDLVVLA-----LPAG 112 (381)
T ss_dssp SSEEEESSCTTSTTTGGGBTTBEEEE-----EECBHHHHHHHHHTTCCCEECC---GGGSCTTCEEEEEEE-----CCGG
T ss_pred CCcEEEecCCCCccccccCCCCceEE-----EeCcHHHHHHHHHcCCCccccC---CccCCcCCCCEEEEE-----CCcc
Confidence 368999999999988888633 2332 222221 122334555432111 122346889987643 442
Q ss_pred ----cHHHHHHHhhhhccCCeEEEEEc-ChhhHHHHHHHHH-hcCC
Q 027609 148 ----SLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVK-SLHW 187 (221)
Q Consensus 148 ----d~~~vL~EmdRVLRPGG~~ii~d-~~~~~~~i~~i~~-~l~W 187 (221)
..+..|.++.+.|+|||.+++.- ...-++++.+.++ .+.|
T Consensus 113 k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g~~~~~~~~~~~~~~ 158 (381)
T 3dmg_A 113 RGTAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEARALLGY 158 (381)
T ss_dssp GCHHHHHHHHHHHHHHEEEEEEEEEEEEGGGTHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHhCCCCCEEEEEEccHHHHHHHHHHHHhhhcc
Confidence 24788999999999999987664 5555666655554 3444
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=86.38 E-value=3.8 Score=36.25 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=62.1
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHcCccc--e-eccccccCCC--CC-CccCeeeecc---c
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGLFG--L-YHDWCESFNT--YP-RTYDLLHADH---L 141 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eRGl~~--~-~~d~~e~f~~--yp-~sFDlVh~~~---v 141 (221)
.+|+|+-||.|+++..|...|...-.+..+|... .++..... ... . ..|..+ +.+ ++ ..+|+|+++- -
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N-~~~~~~~~~Di~~-~~~~~~~~~~~D~l~~gpPCq~ 80 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN-FPHTQLLAKTIEG-ITLEEFDRLSFDMILMSPPCQP 80 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH-CTTSCEECSCGGG-CCHHHHHHHCCSEEEECCC---
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHh-ccccccccCCHHH-ccHhHcCcCCcCEEEEcCCCcc
Confidence 4799999999999999988874211255666643 44443333 222 1 223222 221 22 2689999763 2
Q ss_pred ccccc-----cc-HHHHHHHhhhhc---c--CCeEEE--EEc--ChhhHHHHHHHHHhcCCeEE
Q 027609 142 FSTIK-----KS-LKAVVAEVDRIL---R--PDGNLI--LRD--DAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 142 ~~h~~-----~d-~~~vL~EmdRVL---R--PGG~~i--i~d--~~~~~~~i~~i~~~l~W~~~ 190 (221)
|+..- +| ....+.|+-|++ | |-=+++ +.. .....+.+.+.+..+.+++.
T Consensus 81 fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~ 144 (343)
T 1g55_A 81 FTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQ 144 (343)
T ss_dssp ---------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEE
T ss_pred hhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHHCCCeeE
Confidence 33211 02 223566666665 4 653333 221 12356677777778877765
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=85.27 E-value=0.47 Score=40.13 Aligned_cols=42 Identities=17% Similarity=-0.019 Sum_probs=32.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
.....|||..||+|+.+.+....|. ++.++|.. ..++++.+|
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr---~~ig~e~~~~~~~~~~~r 253 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGR---NFIGCDMNAEYVNQANFV 253 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHH
Confidence 3567899999999999998888775 35667765 477888777
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.93 E-value=0.41 Score=42.17 Aligned_cols=91 Identities=9% Similarity=0.011 Sum_probs=54.5
Q ss_pred CCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceec----cccccCCCC-CCccCeeeeccc
Q 027609 70 FVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYH----DWCESFNTY-PRTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~----d~~e~f~~y-p~sFDlVh~~~v 141 (221)
...+||-.|||. |.+++.|++. |+. .|+.++.+ +.++.+.+.|...++. ++.+.+... ++.||+|.-.
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~-- 265 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGAS--IIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALES-- 265 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEEC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEEC--
Confidence 467899999986 6677777663 652 13444443 4677787777532221 111111101 1357877643
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.. ....+.+.-+.|||||.+++-
T Consensus 266 ---~g--~~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 266 ---TG--SPEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp ---SC--CHHHHHHHHHTEEEEEEEEEC
T ss_pred ---CC--CHHHHHHHHHHHhcCCEEEEe
Confidence 11 135678888999999999875
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=84.47 E-value=0.63 Score=41.50 Aligned_cols=96 Identities=16% Similarity=0.068 Sum_probs=56.8
Q ss_pred CCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceecccc-ccC-----CC-CC-CccCeeee
Q 027609 70 FVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHDWC-ESF-----NT-YP-RTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~-e~f-----~~-yp-~sFDlVh~ 138 (221)
...+||-+|||. |.++..|++. |+. .|+.++.+ +.++.+.+.|.. .+ |.. +.+ .. .+ +.||+|.-
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~--~Vi~~~~~~~~~~~a~~lGa~-~i-~~~~~~~~~~~~~~~~~g~g~Dvvid 260 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARLLGAA--CVIVGDQNPERLKLLSDAGFE-TI-DLRNSAPLRDQIDQILGKPEVDCGVD 260 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHTTTCE-EE-ETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCCc-EE-cCCCcchHHHHHHHHhCCCCCCEEEE
Confidence 467999999987 7777777764 651 23555544 467788777752 22 211 111 00 12 36888764
Q ss_pred ccccccc-------cccHHHHHHHhhhhccCCeEEEEE
Q 027609 139 DHLFSTI-------KKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 139 ~~v~~h~-------~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.---..+ +.++...+.+.-++|||||.+++-
T Consensus 261 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 261 AVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp CSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 3211100 001335788999999999999864
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=82.88 E-value=7.4 Score=35.02 Aligned_cols=113 Identities=17% Similarity=0.119 Sum_probs=61.7
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHcCccc--e-eccccccCCC--C------CCccCeeeec
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGLFG--L-YHDWCESFNT--Y------PRTYDLLHAD 139 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eRGl~~--~-~~d~~e~f~~--y------p~sFDlVh~~ 139 (221)
-+|+|+=||.|+++..|...|..+ +..+|... .++.. ++-.+. + ..|..+ +.. + +..+|+|+++
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~--v~avE~d~~a~~t~-~~N~~~~~~~~~DI~~-~~~~~~~~~~~~~~~~D~i~gg 78 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDV--KMAVEIDQHAINTH-AINFPRSLHVQEDVSL-LNAEIIKGFFKNDMPIDGIIGG 78 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEE--EEEECSCHHHHHHH-HHHCTTSEEECCCGGG-CCHHHHHHHHCSCCCCCEEEEC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcE--EEEEeCCHHHHHHH-HHhCCCCceEecChhh-cCHHHHHhhcccCCCeeEEEec
Confidence 479999999999999998888654 44566543 33332 222322 1 123222 211 1 2679999965
Q ss_pred ---ccccccc----cc-HHHHHHHhhhh---ccCCeEEE------EE-cChhhHHHHHHHHHhcCCeE
Q 027609 140 ---HLFSTIK----KS-LKAVVAEVDRI---LRPDGNLI------LR-DDAETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 140 ---~v~~h~~----~d-~~~vL~EmdRV---LRPGG~~i------i~-d~~~~~~~i~~i~~~l~W~~ 189 (221)
+-|+..- +| ...++.|+-|+ +||-=+++ ++ +...+++.+. .+.++.+.+
T Consensus 79 pPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v 145 (376)
T 3g7u_A 79 PPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDI 145 (376)
T ss_dssp CCCCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEE
T ss_pred CCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCCcc
Confidence 3333111 12 22455555554 57864444 22 1223566666 677777776
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=81.55 E-value=2.1 Score=37.15 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=55.2
Q ss_pred CCCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCCCccCeeeeccccccc
Q 027609 69 SFVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTI 145 (221)
Q Consensus 69 ~~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~ 145 (221)
....+||-.|||. |.++..|++. |+. |+.++.+ +.++.+.+.|...++.+ .+ .+.+.||+|.-. .
T Consensus 175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~---Vi~~~~~~~~~~~~~~lGa~~v~~~-~~---~~~~~~D~vid~--~--- 242 (348)
T 3two_A 175 TKGTKVGVAGFGGLGSMAVKYAVAMGAE---VSVFARNEHKKQDALSMGVKHFYTD-PK---QCKEELDFIIST--I--- 242 (348)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHTTCE---EEEECSSSTTHHHHHHTTCSEEESS-GG---GCCSCEEEEEEC--C---
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCe---EEEEeCCHHHHHHHHhcCCCeecCC-HH---HHhcCCCEEEEC--C---
Confidence 3477899999976 6677777653 654 4555543 57888888775444422 11 123478887643 1
Q ss_pred cccHHHHHHHhhhhccCCeEEEEE
Q 027609 146 KKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 146 ~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
. . ...+.+.-++|||||.+++-
T Consensus 243 g-~-~~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 243 P-T-HYDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp C-S-CCCHHHHHTTEEEEEEEEEC
T ss_pred C-c-HHHHHHHHHHHhcCCEEEEE
Confidence 1 0 12456677899999999986
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=81.26 E-value=3.6 Score=36.69 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=50.0
Q ss_pred CccCeeeec----cccccccc------cHHHHHHHhhhhccCCeEEEEEc----ChhhHHHHHHHHHhcCCeEEEee---
Q 027609 131 RTYDLLHAD----HLFSTIKK------SLKAVVAEVDRILRPDGNLILRD----DAETIVEVEDLVKSLHWDVRMIY--- 193 (221)
Q Consensus 131 ~sFDlVh~~----~v~~h~~~------d~~~vL~EmdRVLRPGG~~ii~d----~~~~~~~i~~i~~~l~W~~~~~~--- 193 (221)
..||||.++ .=.|||+. ....+=...-+-|+|||.++++- +..--+-|.+++++.+-..+..-
T Consensus 210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARkF~~~rv~~P~cv 289 (324)
T 3trk_A 210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSRALKPPCV 289 (324)
T ss_dssp CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEECCTTC
T ss_pred CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhhheeeeeecCccc
Confidence 899999776 33467774 33444456779999999999983 11123446777887776544332
Q ss_pred cCCCeeEEEEEe
Q 027609 194 TNDNQGMLCVHK 205 (221)
Q Consensus 194 ~~~~e~~l~~~K 205 (221)
+++.|.+|+..+
T Consensus 290 ~snTEv~~vF~~ 301 (324)
T 3trk_A 290 TSNTEMFFLFSN 301 (324)
T ss_dssp CBTTCEEEEEEE
T ss_pred cccceEEEEEEe
Confidence 456788888765
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.18 E-value=0.59 Score=41.51 Aligned_cols=96 Identities=17% Similarity=0.027 Sum_probs=57.9
Q ss_pred CCCeEEeecCcc-hHHHHHHhh-CCCeEEEeccCCCC-CCHHHHHHcCccceec--c---ccccCCC-CC-CccCeeeec
Q 027609 70 FVRNVMDMRAVY-GGFAAALKD-LKVWVMNVVPIESP-DTLPIIYERGLFGLYH--D---WCESFNT-YP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~-~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~--d---~~e~f~~-yp-~sFDlVh~~ 139 (221)
...+||-+|||. |.++..|++ .|+. .|+.++.+ +.++.+.+-|.. .+. + +.+.+.. .. +.||+|.-.
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~--~Vi~~~~~~~~~~~a~~lGa~-~i~~~~~~~~~~~v~~~t~g~g~Dvvid~ 261 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARLLGAA--VVIVGDLNPARLAHAKAQGFE-IADLSLDTPLHEQIAALLGEPEVDCAVDA 261 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTTCE-EEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHcCCc-EEccCCcchHHHHHHHHhCCCCCCEEEEC
Confidence 467899999976 777777766 3653 23445544 467888887763 221 0 1111110 12 468887643
Q ss_pred ccc---------ccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 140 HLF---------STIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 140 ~v~---------~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
--. .|.. ++...+.+.-++|||||.+++-
T Consensus 262 ~G~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 262 VGFEARGHGHEGAKHE-APATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp CCTTCBCSSTTGGGSB-CTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCccccccccccccc-chHHHHHHHHHHHhcCCEEEEe
Confidence 211 1222 4556889999999999999874
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.51 E-value=1.5 Score=34.81 Aligned_cols=56 Identities=25% Similarity=0.310 Sum_probs=38.0
Q ss_pred CCCC-CccCeeeeccccc-cccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhc
Q 027609 127 NTYP-RTYDLLHADHLFS-TIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSL 185 (221)
Q Consensus 127 ~~yp-~sFDlVh~~~v~~-h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l 185 (221)
-..| ++||+||-=.=-. ....-+..+|.=+.+-|||||.|.- -+.-.+++.|+.++
T Consensus 53 VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g---l~~~~~~EailaGf 110 (136)
T 2km1_A 53 ITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG---LSDIYKVDALINGF 110 (136)
T ss_dssp CCCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC---CCHHHHHHHHHHTE
T ss_pred ccCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe---cCcchhhHHHhhcc
Confidence 3466 9999998421000 1111357899999999999999996 11146788888776
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 221 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.74 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.73 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.72 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.69 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.67 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.66 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.66 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.65 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.64 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.63 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.63 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.6 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.59 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.59 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.58 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.56 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.56 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.55 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.54 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.54 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.53 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.51 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.49 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.48 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.47 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.47 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.44 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.44 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.44 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.42 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.33 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.3 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.26 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.22 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.21 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.2 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.17 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.15 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.14 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.13 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.11 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.1 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.09 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.08 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.96 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.89 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.88 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.88 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.87 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.82 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.76 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.69 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.62 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.61 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.6 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.54 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.47 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.41 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.36 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.35 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.33 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.24 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.22 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.21 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.19 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.17 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.14 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.0 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.99 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.98 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.92 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.75 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.72 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.63 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.58 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.58 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.49 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.46 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.45 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.44 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.26 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.25 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.18 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.18 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.16 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.1 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.73 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.51 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.16 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 95.76 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.65 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 95.47 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 94.83 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 94.55 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 94.4 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.03 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 93.03 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 92.23 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 91.88 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 91.35 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 91.12 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 90.88 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 90.76 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 90.66 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 89.06 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 88.56 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 88.32 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 86.26 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 86.08 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 85.23 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 83.48 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 82.46 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 80.55 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 80.04 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.74 E-value=1.3e-18 Score=142.78 Aligned_cols=100 Identities=19% Similarity=0.264 Sum_probs=79.8
Q ss_pred ccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCCCC-CccCe
Q 027609 64 MGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNTYP-RTYDL 135 (221)
Q Consensus 64 L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~yp-~sFDl 135 (221)
++|+. ..+|||+|||+|.++..|++++. +++++|.+ +|++.|.++ |+.. .++.-++.+ +|| ++||+
T Consensus 11 ~~l~~--~~rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l-~~~~~~fD~ 84 (231)
T d1vl5a_ 11 AALKG--NEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-PFTDERFHI 84 (231)
T ss_dssp HTCCS--CCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-CSCTTCEEE
T ss_pred cCCCC--cCEEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhcccccccccccccccccccc-ccccccccc
Confidence 33444 67999999999999999999875 46888986 588877654 4433 333223444 477 99999
Q ss_pred eeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 136 LHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 136 Vh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|+|..+++|+. |+..+|.|+.|+|||||++++.+
T Consensus 85 v~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 85 VTCRIAAHHFP-NPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp EEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccC-CHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999999999 89999999999999999999975
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=1.4e-18 Score=144.41 Aligned_cols=98 Identities=20% Similarity=0.365 Sum_probs=79.2
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCCCC-CccCeeeec
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
-.+..+|||+|||+|.++..|++++. +++++|.+ +|++.|.++ |+.. .+..-.+.+ +|| ++||+|+|.
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~ 89 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-PFPDDSFDIITCR 89 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-CSCTTCEEEEEEE
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhcccccccccccccccccc-cccccccceeeee
Confidence 33478999999999999999999863 57899987 588877655 3322 233223444 477 999999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.+++|.+ |+..+|.|+.|+|||||++++.+
T Consensus 90 ~~l~~~~-d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 90 YAAHHFS-DVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp SCGGGCS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeeccc-CHHHHHHHHHHeeCCCcEEEEEE
Confidence 9999998 89999999999999999999975
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=2.6e-18 Score=140.94 Aligned_cols=97 Identities=23% Similarity=0.401 Sum_probs=80.7
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeec-cccccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHAD-HLFSTIKK 147 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~-~v~~h~~~ 147 (221)
..+|||+|||+|.++..|++++. .|+++|.+ +|++.|.+++....+..-.+.+ +|+ ++||+|.|. .+++|++
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l-~~~~~~fD~ii~~~~~~~~~~- 117 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDL-PFPSGAFEAVLALGDVLSYVE- 117 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSC-CSCTTCEEEEEECSSHHHHCS-
T ss_pred CCEEEEECCCCchhcccccccce---EEEEeeccccccccccccccccccccccccc-ccccccccceeeecchhhhhh-
Confidence 55899999999999999999875 46899987 5999999998754433223445 476 999999985 6888888
Q ss_pred cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 148 SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|+..+|.|+.|+|||||.++++..+
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred hHHHHHHHHHhhcCcCcEEEEEECC
Confidence 8999999999999999999998754
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=7.8e-18 Score=136.75 Aligned_cols=91 Identities=21% Similarity=0.277 Sum_probs=74.8
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCCCccCeeeeccccccccccHH
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKSLK 150 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~d~~ 150 (221)
.+|||+|||+|.++..|.+ ++++|.+ +|++.+.+|++. .+...++.++..+++||+|+|..+++|++ |+.
T Consensus 38 ~~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~~~-~~~~d~~~l~~~~~~fD~I~~~~~l~h~~-d~~ 108 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRGVF-VLKGTAENLPLKDESFDFALMVTTICFVD-DPE 108 (208)
T ss_dssp SCEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTTCE-EEECBTTBCCSCTTCEEEEEEESCGGGSS-CHH
T ss_pred CeEEEECCCCcccccccce-------EEEEeCChhhcccccccccc-ccccccccccccccccccccccccccccc-ccc
Confidence 4799999999999998853 2567776 599999999764 34443555643349999999999999998 899
Q ss_pred HHHHHhhhhccCCeEEEEEcC
Q 027609 151 AVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 151 ~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.+|.|+.|+|||||.+++.+.
T Consensus 109 ~~l~~~~~~L~pgG~l~i~~~ 129 (208)
T d1vlma_ 109 RALKEAYRILKKGGYLIVGIV 129 (208)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhhhhcCCCCceEEEEec
Confidence 999999999999999999864
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=3e-17 Score=132.85 Aligned_cols=98 Identities=22% Similarity=0.348 Sum_probs=77.9
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-cceeccccccCCCCC-CccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FGLYHDWCESFNTYP-RTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~~~~d~~e~f~~yp-~sFDlVh~~~v~~ 143 (221)
..+|||+|||+|.++..|++.+. +++++|.+ +|++.|+++ +. +..+..-.+.+ +++ ++||+|+|..+++
T Consensus 38 ~~~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l-~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 38 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL-SFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC-CSCTTCEEEEEEESCGG
T ss_pred CCEEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccccc-cccCcCceEEEEecchh
Confidence 45899999999999999999875 46899987 599988876 22 11222112333 466 9999999999999
Q ss_pred cccc-cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 144 TIKK-SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 144 h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|++. |+..+|.|+.|+|||||.+++.+..
T Consensus 114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9864 7889999999999999999998654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.66 E-value=3.9e-17 Score=139.47 Aligned_cols=97 Identities=22% Similarity=0.263 Sum_probs=78.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCCC-CccCeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTYP-RTYDLLH 137 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~yp-~sFDlVh 137 (221)
.+..+|||+|||+|+++..|+++ +. +|+++|.+ .|++.+.++ |+.. ++ .|+ +.+ +|| ++||+|+
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~-~~l-~~~~~sfD~V~ 140 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF-LEI-PCEDNSYDFIW 140 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT-TSC-SSCTTCEEEEE
T ss_pred CCCCEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhccccccccccccccccccc-ccc-cccccccchhh
Confidence 34789999999999999999886 54 46888876 488777765 4432 22 343 334 477 9999999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
|..+|+|++ |+..+|.|+.|+|||||++++.+.
T Consensus 141 ~~~~l~h~~-d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 141 SQDAFLHSP-DKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp EESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccchhhhcc-CHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999999999 899999999999999999999853
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.66 E-value=6e-17 Score=133.85 Aligned_cols=102 Identities=12% Similarity=0.137 Sum_probs=81.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCC-CCHHHHHHc----CccceeccccccCCCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP-DTLPIIYER----GLFGLYHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
...+|||+|||+|.++..|+++- -...+++++|.+ +|++.|.++ +....++-.+..+.++| ..||+|+|+.++
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l 118 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 118 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence 36789999999999999988641 112368999997 599999876 33334443344566777 999999999999
Q ss_pred ccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 143 STIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 143 ~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+|++. |+..+|.||.|+|||||.+++.|.
T Consensus 119 ~~~~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 119 QFLPPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp GGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccChhhHHHHHHHHHHhCCCCceeecccc
Confidence 98864 899999999999999999999863
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=4.5e-17 Score=136.25 Aligned_cols=101 Identities=10% Similarity=0.081 Sum_probs=79.7
Q ss_pred cccCCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc----eeccccccCCCCCCc
Q 027609 63 GMGINWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG----LYHDWCESFNTYPRT 132 (221)
Q Consensus 63 ~L~i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~----~~~d~~e~f~~yp~s 132 (221)
.+++.+ ..+|||+|||+|.++..|+++ ++. ++++|.+ .|++.+.++ |+.. ...|+.+ + +.+++
T Consensus 28 ~~~l~p--g~~VLDiGCG~G~~~~~la~~~~~~---v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~-~-~~~~~ 100 (245)
T d1nkva_ 28 VLRMKP--GTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-Y-VANEK 100 (245)
T ss_dssp HTCCCT--TCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-C-CCSSC
T ss_pred HcCCCC--CCEEEEEcCCCCHHHHHHHHhcCCE---EEEEecccchhhHHHHHHHHhhccccchhhhhHHhh-c-cccCc
Confidence 455555 689999999999999999875 554 5888886 588877666 6533 2334322 2 23499
Q ss_pred cCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 133 YDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 133 FDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
||+|+|..+++|+. |+..+|.||.|+|||||.+++.+.
T Consensus 101 fD~v~~~~~~~~~~-d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 101 CDVAACVGATWIAG-GFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp EEEEEEESCGGGTS-SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred eeEEEEEehhhccC-CHHHHHHHHHHHcCcCcEEEEEec
Confidence 99999999999999 899999999999999999999863
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.6e-16 Score=131.32 Aligned_cols=121 Identities=16% Similarity=0.189 Sum_probs=91.4
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----ccc--ee-ccccccCCCCCCccCeeeec
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LFG--LY-HDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~~--~~-~d~~e~f~~yp~sFDlVh~~ 139 (221)
.....+|||+|||+|.++..|+++... +|+++|.+ +|++.|.++. ... .+ .|. +.+++-+++||+|+|.
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~-~~~~~~~~~fD~I~~~ 134 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQ 134 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEE
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccccccccccc-cccccccccccccccc
Confidence 345688999999999999998877543 57888987 5999988873 211 12 233 3354224999999999
Q ss_pred cccccccc-cHHHHHHHhhhhccCCeEEEEEcChh---------------hHHHHHHHHHhcCCeEEE
Q 027609 140 HLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDAE---------------TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 140 ~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~~---------------~~~~i~~i~~~l~W~~~~ 191 (221)
.+++|+++ +...+|.++.|+|||||.+++.|... ..+.+.++++.-.+++.-
T Consensus 135 ~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~ 202 (222)
T d2ex4a1 135 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA 202 (222)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred cccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEE
Confidence 99999983 34589999999999999999985311 267788888888887643
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.63 E-value=1.9e-16 Score=131.06 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=79.3
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----cc-ce-eccccccCCCCCCccCeeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LF-GL-YHDWCESFNTYPRTYDLLHA 138 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~-~~-~~d~~e~f~~yp~sFDlVh~ 138 (221)
....+.++|||+|||+|.++..|++++. +++++|.+ +|++.|.++. +. .. ..| .+.+ +++++||+|.|
T Consensus 37 ~~~~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d-~~~l-~~~~~fD~I~~ 111 (251)
T d1wzna1 37 DAKREVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGD-VLEI-AFKNEFDAVTM 111 (251)
T ss_dssp TCSSCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESC-GGGC-CCCSCEEEEEE
T ss_pred hcCCCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehh-hhhc-ccccccchHhh
Confidence 3455578999999999999999999875 57899987 5999888773 21 12 234 3445 36799999999
Q ss_pred c-cccccccc-cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 139 D-HLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 139 ~-~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
. .+++|... ++..+|.++.|+|||||++++....
T Consensus 112 ~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 6 57777643 7889999999999999999997543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.63 E-value=1.2e-16 Score=132.52 Aligned_cols=96 Identities=21% Similarity=0.328 Sum_probs=77.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccc--eeccccccCCCCCCccCeeeecccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHADHLFSTIK 146 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~--~~~d~~e~f~~yp~sFDlVh~~~v~~h~~ 146 (221)
+..+|||+|||+|.++..|++++. +|+++|.+ ++++.+.++.-.+ .++.-.+.++ ++++||+|.|..+|+|+.
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGCS
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccccceeEecC
Confidence 356799999999999999998874 46888886 5999998884322 2332123332 469999999999999998
Q ss_pred ccHHHHHHHhh-hhccCCeEEEEEc
Q 027609 147 KSLKAVVAEVD-RILRPDGNLILRD 170 (221)
Q Consensus 147 ~d~~~vL~Emd-RVLRPGG~~ii~d 170 (221)
||..+|.|+. |+|||||++++..
T Consensus 96 -d~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 96 -DPVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHhcCCCceEEEEe
Confidence 9999999997 9999999999984
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.60 E-value=4.5e-16 Score=132.65 Aligned_cols=123 Identities=14% Similarity=0.116 Sum_probs=91.3
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----ccceeccccccCCCCC-CccCeeeec
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LFGLYHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~~~~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
+......+|||+|||+|.++..|+.+... +|..+|.+ .|++.|.++- .+..+..-.+.|+ ++ ++||+|+|.
T Consensus 89 l~~~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~I~~~ 165 (254)
T d1xtpa_ 89 LPGHGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT-LPPNTYDLIVIQ 165 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC-CCSSCEEEEEEE
T ss_pred CCCCCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccccccc-cCCCccceEEee
Confidence 44556789999999999999998876433 46788886 5999998772 1222222123343 44 999999999
Q ss_pred cccccccc-cHHHHHHHhhhhccCCeEEEEEcChh----------------hHHHHHHHHHhcCCeEEE
Q 027609 140 HLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 140 ~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~~----------------~~~~i~~i~~~l~W~~~~ 191 (221)
.+++|+++ +...+|.++.|+|||||+++|.|... ..+.+++++++-.+++..
T Consensus 166 ~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~ 234 (254)
T d1xtpa_ 166 WTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVK 234 (254)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEE
T ss_pred ccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEE
Confidence 99999984 45688999999999999999986321 146778888887887653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.59 E-value=5.3e-16 Score=133.47 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=77.1
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-ce-eccccccCCCCCCccCeeeeccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-GL-YHDWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~~-~~d~~e~f~~yp~sFDlVh~~~v 141 (221)
.+..+|||+|||+|.++..|++.--...+++++|.+ .+++.|.++ ++. .. ..|. +.+ +++++||+|+|..+
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~-~~~-~~~~~fD~v~~~~~ 103 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA-TEI-ELNDKYDIAICHAF 103 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCT-TTC-CCSSCEEEEEEESC
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccc-ccc-cccCCceEEEEehh
Confidence 346889999999999999998751111246888987 588888766 221 11 2343 323 35789999999999
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++|++ ||..+|.|+.|+|||||++++.|.
T Consensus 104 l~~~~-d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 104 LLHMT-TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp GGGCS-SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhcCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999 899999999999999999999875
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.59 E-value=3.1e-16 Score=123.51 Aligned_cols=105 Identities=9% Similarity=0.035 Sum_probs=80.4
Q ss_pred hhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc------------------ccee-
Q 027609 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL------------------FGLY- 119 (221)
Q Consensus 60 Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl------------------~~~~- 119 (221)
|+..|.+.+ ..+|||+|||+|..+..|+++|. +|+++|.+ +|++.+.++.- ...+
T Consensus 12 ~~~~l~~~~--~~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T d1pjza_ 12 YWSSLNVVP--GARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 86 (201)
T ss_dssp HHHHHCCCT--TCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHHcCCCC--CCEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence 455555444 78999999999999999999985 46999987 59999988721 0011
Q ss_pred ccccccCCCCC-CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 120 HDWCESFNTYP-RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 120 ~d~~e~f~~yp-~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.|+ ..+++++ .+||+|.|..+++|+.. +...++.+|.|+|||||.+++..
T Consensus 87 ~d~-~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 87 GDF-FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp ECC-SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred ccc-cccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 121 2233345 89999999999999875 67899999999999999988763
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.6e-15 Score=125.86 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=89.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc--c----------------c-----------
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL--F----------------G----------- 117 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl--~----------------~----------- 117 (221)
..+..+|||+|||+|.++..+++.+.. +|+++|.+ .|++.|.++-- . +
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~--~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccC--cEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 345788999999999998888776543 68999987 58888876510 0 0
Q ss_pred --------eecc--ccccCCCCC-CccCeeeeccccccccc---cHHHHHHHhhhhccCCeEEEEEcChh----------
Q 027609 118 --------LYHD--WCESFNTYP-RTYDLLHADHLFSTIKK---SLKAVVAEVDRILRPDGNLILRDDAE---------- 173 (221)
Q Consensus 118 --------~~~d--~~e~f~~yp-~sFDlVh~~~v~~h~~~---d~~~vL~EmdRVLRPGG~~ii~d~~~---------- 173 (221)
...+ ......+++ ++||+|.|..+++|+.. ++..++.++.|+|||||++++.+...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~ 206 (257)
T d2a14a1 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKRE 206 (257)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEE
T ss_pred HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccc
Confidence 0000 011123466 99999999999999863 67889999999999999999986321
Q ss_pred ------hHHHHHHHHHhcCCeEE
Q 027609 174 ------TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 174 ------~~~~i~~i~~~l~W~~~ 190 (221)
..+.+++.+++-.+++.
T Consensus 207 ~~~~~~~~~~~~~~l~~aGf~v~ 229 (257)
T d2a14a1 207 FSCVALEKGEVEQAVLDAGFDIE 229 (257)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEE
T ss_pred ccccCCCHHHHHHHHHHCCCEEE
Confidence 26888899999999764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=3.8e-15 Score=129.31 Aligned_cols=101 Identities=10% Similarity=0.129 Sum_probs=77.7
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----CccceeccccccCCCCCCccCeeeecc
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFGLYHDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~~d~~e~f~~yp~sFDlVh~~~ 140 (221)
.-.+..+|||+|||.|+++..++++ |+ +|++++.+ ++++.|.+| |+...+......+..++++||.|.+..
T Consensus 49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~---~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~ 125 (280)
T d2fk8a1 49 DLKPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIE 125 (280)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEES
T ss_pred CCCCCCEEEEecCCchHHHHHHHHhCce---eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhh
Confidence 3344889999999999999999876 65 46788876 477665554 665433322223334679999999999
Q ss_pred ccccccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 141 LFSTIKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 141 v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+|.|+.. +...+|.++.|+|||||.+++.+
T Consensus 126 ~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 126 AFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 9999974 77899999999999999999864
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.56 E-value=2.6e-15 Score=121.79 Aligned_cols=94 Identities=16% Similarity=0.287 Sum_probs=74.0
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccce---eccccccCCCCCCccCeeeeccccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFGL---YHDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~~---~~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
.+|||+|||+|.++..|++++. +++++|.+ .+++.+.+ .|+..+ ..|..+ + +++++||+|.|..+|+
T Consensus 32 grvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT-L-TFDGEYDFILSTVVMM 106 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTT-C-CCCCCEEEEEEESCGG
T ss_pred CcEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccccchhhhheeccc-c-cccccccEEEEeeeee
Confidence 4799999999999999999985 46888887 48876543 344432 234322 2 3469999999999999
Q ss_pred cccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 144 TIKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 144 h~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|++. +...+|.++.|+|||||++++.+
T Consensus 107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 107 FLEAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp GSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9875 56789999999999999999974
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5.2e-15 Score=125.57 Aligned_cols=99 Identities=11% Similarity=0.195 Sum_probs=73.8
Q ss_pred CCeEEeecCcchHHHHHHhhC-----CCeEEEeccCCCC-CCHHHHHHcC-----ccceeccccc---------cCCCCC
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESP-DTLPIIYERG-----LFGLYHDWCE---------SFNTYP 130 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-----~v~vmnv~~~d~~-~~l~~a~eRG-----l~~~~~d~~e---------~f~~yp 130 (221)
.-+|||+|||+|.++..|++. +-....++++|.+ .|++.+.++- +.....+|.. ...+++
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence 347999999999998877553 2234467899987 4999888761 1222112111 123455
Q ss_pred -CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 131 -RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 131 -~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++||+|+|.++|+|.+ |+..+|.++.|+|||||++++..
T Consensus 121 ~~~fD~I~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~i~~ 160 (280)
T d1jqea_ 121 LQKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIV 160 (280)
T ss_dssp CCCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCceeEEEEccceecCC-CHHHHHHHHHhhCCCCCEEEEEE
Confidence 9999999999999998 89999999999999999998873
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.54 E-value=3.8e-15 Score=125.86 Aligned_cols=102 Identities=23% Similarity=0.397 Sum_probs=77.1
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cccc----eeccccccCCCCCCccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLFG----LYHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl~~----~~~d~~e~f~~yp~sFDlVh 137 (221)
++....++|||+|||+|.++..|+++.-. ..++.+|.+++++.+.++ |+.. +.+| .|.+.|.+||+|.
T Consensus 76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~-~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D---~~~~~~~~~D~v~ 151 (253)
T d1tw3a2 76 YDWTNVRHVLDVGGGKGGFAAAIARRAPH-VSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGD---FFEPLPRKADAII 151 (253)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECC---TTSCCSSCEEEEE
T ss_pred cCCccCCEEEEeCCCCCHHHHHHHHhcce-eEEEEccCHHHHHHHHHHHHHhhcccchhhcccc---chhhcccchhhee
Confidence 56677899999999999999999887311 134667777777665544 5433 1233 2445568899999
Q ss_pred eccccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 138 ADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 138 ~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++.+|+|+.+ +...+|.|+.|+|||||.++|.|.
T Consensus 152 ~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 152 LSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred eccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 9999999984 446889999999999999999863
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.54 E-value=4.3e-15 Score=123.65 Aligned_cols=96 Identities=21% Similarity=0.259 Sum_probs=74.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-cee-ccccccCCCCCCccCeeeec-cc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-GLY-HDWCESFNTYPRTYDLLHAD-HL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~~~-~d~~e~f~~yp~sFDlVh~~-~v 141 (221)
..++|||+|||+|.++..|++++. +++++|.+ +|++.|.+| |+. ..+ .|.. .++ .+++||+|.|. .+
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NLN-INRKFDLITCCLDS 111 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GCC-CSCCEEEEEECTTG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchh-hhc-ccccccccceeeee
Confidence 357899999999999999999985 46899997 599998876 332 122 2432 232 35899999985 57
Q ss_pred cccccc--cHHHHHHHhhhhccCCeEEEEEc
Q 027609 142 FSTIKK--SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 142 ~~h~~~--d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++|+.+ ++..+|.++.|.|||||.|++.-
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 777653 78889999999999999999864
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.53 E-value=3.1e-15 Score=125.77 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=76.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----cc-c---eeccccccCCCCC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LF-G---LYHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~-~---~~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
+..+|||+|||+|+++..+++.+.. +++++|.+ +|++.|.+|. .. . ...|. ...+..+ ++||+|.|.
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~-~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS-YGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT-TTSCCCCSSCEEEEEEE
T ss_pred CcCEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcch-hhhcccccccceEEEEc
Confidence 3678999999999999999887653 57899997 5999998772 11 1 12342 1122223 799999999
Q ss_pred cccccccc---cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 140 HLFSTIKK---SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 140 ~v~~h~~~---d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.+++|+.. +...+|.++.|+|||||+++++..+
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 99998753 5678999999999999999998654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.51 E-value=4.6e-14 Score=114.75 Aligned_cols=136 Identities=14% Similarity=0.190 Sum_probs=94.6
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCCCC-CccCeeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNTYP-RTYDLLHA 138 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~yp-~sFDlVh~ 138 (221)
......+|||+|||+|.++.+|++++. +++.+|.+ .+++.+.++ ++.+ +..-.+..+..++ ++||+|.|
T Consensus 49 ~~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~ 125 (194)
T d1dusa_ 49 VVDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIIT 125 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEE
T ss_pred CcCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEEE
Confidence 344578999999999999999988753 56778876 477777654 3422 1111122233445 89999999
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEEcC-hhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
+..+++..+....++.++.|+|+|||.+++... ....+.+...++..-+++.....+.+=+||-++|
T Consensus 126 ~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~~gf~vl~a~K 193 (194)
T d1dusa_ 126 NPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEETTEEEEEEEC
T ss_pred cccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEecCCcEEEEEEE
Confidence 988876653357889999999999999877533 3334555666666666666555556677888887
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=8.6e-15 Score=122.16 Aligned_cols=99 Identities=15% Similarity=0.120 Sum_probs=73.7
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcc------ceeccccccCCCCC-CccCeee---
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLF------GLYHDWCESFNTYP-RTYDLLH--- 137 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~------~~~~d~~e~f~~yp-~sFDlVh--- 137 (221)
....+|||+|||+|.++..+++++. -+++++|.+ .+++.|.++.-- ...+++.....+++ .+||+|.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~ 129 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT 129 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecc
Confidence 3478999999999999999998753 267889987 599998887421 12233332233455 6776665
Q ss_pred --eccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 138 --ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 138 --~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+...+.|+. ++..++.|+.|+|||||.|++.+
T Consensus 130 ~~~~~~~~~~~-~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 130 YPLSEETWHTH-QFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CCCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccccccc-CHHHHHHHHHHHcCCCcEEEEEe
Confidence 556667777 89999999999999999999864
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=3.2e-14 Score=124.43 Aligned_cols=104 Identities=10% Similarity=0.132 Sum_probs=76.9
Q ss_pred hcccCCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHH----HHHHcCccceeccccccCCCCCCccCe
Q 027609 62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLP----IIYERGLFGLYHDWCESFNTYPRTYDL 135 (221)
Q Consensus 62 ~~L~i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~----~a~eRGl~~~~~d~~e~f~~yp~sFDl 135 (221)
+.++|+ ...+|||+|||.|+++..++++ |+. +++++.+ ++++ .+.+.|+...+.--...+.+.+++||.
T Consensus 55 ~~l~l~--~G~~VLDiGCG~G~~~~~~a~~~g~~---v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~ 129 (291)
T d1kpia_ 55 DKLNLE--PGMTLLDIGCGWGSTMRHAVAEYDVN---VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDR 129 (291)
T ss_dssp HTTCCC--TTCEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSE
T ss_pred HhcCCC--CCCEEEEecCcchHHHHHHHHhcCcc---eeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccce
Confidence 444454 4889999999999999999865 754 5677776 3554 445557765443212233334599999
Q ss_pred eeeccccccccc--------cHHHHHHHhhhhccCCeEEEEEc
Q 027609 136 LHADHLFSTIKK--------SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 136 Vh~~~v~~h~~~--------d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|.|-.+|.|..+ +...++.++.|+|||||.+++.+
T Consensus 130 i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 130 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp EEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred EeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 999999999862 56899999999999999999874
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=1.5e-14 Score=123.70 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=72.2
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-cce-eccccccCCCCC-CccCeeeeccccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-FGL-YHDWCESFNTYP-RTYDLLHADHLFS 143 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-~~~-~~d~~e~f~~yp-~sFDlVh~~~v~~ 143 (221)
..+..+|||+|||+|.++..|++...- .+++++|.+ .|++.+.++.- +.. +.| ++.+ +|+ ++||+|+|..+++
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~d-~~~l-~~~~~sfD~v~~~~~~~ 158 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPE-ITTFGLDVSKVAIKAAAKRYPQVTFCVAS-SHRL-PFSDTSMDAIIRIYAPC 158 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTT-SEEEEEESCHHHHHHHHHHCTTSEEEECC-TTSC-SBCTTCEEEEEEESCCC
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCC-CEEEEecchHhhhhhhhcccccccceeee-hhhc-cCCCCCEEEEeecCCHH
Confidence 456789999999999999999987321 246888987 59999988742 122 234 3344 466 9999999987766
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
| +.|+.|||||||++++.+..
T Consensus 159 ~--------~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 159 K--------AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp C--------HHHHHHHEEEEEEEEEEEEC
T ss_pred H--------HHHHHHHhCCCcEEEEEeeC
Confidence 5 46899999999999999764
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.47 E-value=2e-14 Score=122.38 Aligned_cols=105 Identities=22% Similarity=0.286 Sum_probs=77.1
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHH----HcCcccee-ccccccCCCCCCccCeeeecc
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIY----ERGLFGLY-HDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~----eRGl~~~~-~d~~e~f~~yp~sFDlVh~~~ 140 (221)
++....++|||+|||+|.++..|+++.- -++++.+|.+++++.+. +.|+...+ .--...|.+.|.+||+|.+..
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~ 155 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF 155 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEES
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccc
Confidence 4567789999999999999999998721 12456677766666554 34543311 100123555678899999999
Q ss_pred ccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 141 LFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 141 v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+|+||.+ +-..+|.++.|+|||||.++|.|.
T Consensus 156 vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 156 VLLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 9999984 446789999999999999999875
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=1.7e-13 Score=117.83 Aligned_cols=126 Identities=17% Similarity=0.132 Sum_probs=89.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccce-e-ccccccCCCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGL-Y-HDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~-~-~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
+..+|||+|||+|.++.++++.+.. |+++|.+ .+++.|+++ |+... . .|.. ..++ ++||+|.|+-+
T Consensus 120 ~g~~VLDiGcGsG~l~i~aa~~g~~---V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~---~~~~~~~fD~V~ani~ 193 (254)
T d2nxca1 120 PGDKVLDLGTGSGVLAIAAEKLGGK---ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLE---AALPFGPFDLLVANLY 193 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHH---HHGGGCCEEEEEEECC
T ss_pred ccCEEEEcccchhHHHHHHHhcCCE---EEEEECChHHHHHHHHHHHHcCCceeEEecccc---ccccccccchhhhccc
Confidence 3679999999999999999988753 6788986 588877764 44322 2 2221 2355 89999999744
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcC-hhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
.+ ....++.++.|+|||||++++++- .+..+.+.+.+++..|+.....+++.=..|+.+|
T Consensus 194 ~~----~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~~~Wv~l~~~r 254 (254)
T d2nxca1 194 AE----LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR 254 (254)
T ss_dssp HH----HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEC
T ss_pred cc----cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEECCEEEEEEeC
Confidence 33 356788999999999999999864 2346778888888899875444433334444443
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=5.6e-14 Score=116.60 Aligned_cols=119 Identities=12% Similarity=0.019 Sum_probs=88.1
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-----------------------cc-eeccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-----------------------FG-LYHDW 122 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-----------------------~~-~~~d~ 122 (221)
.....+|||+|||.|..+..|+++|. +|+++|.| .+++.++++-- +. ...|.
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 119 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI 119 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence 34577999999999999999999985 46999997 48887776521 00 11232
Q ss_pred cccCCCCC-CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcCh---------h---hHHHHHHHHHhcCCe
Q 027609 123 CESFNTYP-RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA---------E---TIVEVEDLVKSLHWD 188 (221)
Q Consensus 123 ~e~f~~yp-~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~---------~---~~~~i~~i~~~l~W~ 188 (221)
.+ +++.+ .+||+|++..+|+|++. +...++.+|.|+|||||++++.... + ..++++.++.. .|+
T Consensus 120 ~~-l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~ 197 (229)
T d2bzga1 120 FD-LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICN 197 (229)
T ss_dssp GG-GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEE
T ss_pred hh-ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCE
Confidence 21 33444 99999999999999875 7889999999999999998777321 1 25678888765 576
Q ss_pred EEE
Q 027609 189 VRM 191 (221)
Q Consensus 189 ~~~ 191 (221)
+..
T Consensus 198 i~~ 200 (229)
T d2bzga1 198 IRC 200 (229)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=3e-14 Score=122.07 Aligned_cols=102 Identities=13% Similarity=0.197 Sum_probs=74.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----ccc-----eec--cccc--cCCCCCCcc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LFG-----LYH--DWCE--SFNTYPRTY 133 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~~-----~~~--d~~e--~f~~yp~sF 133 (221)
....++|||+|||+|.++..|+++|. +|+++|.+ +||+.|.++. ... .+. +|-. .-.++..+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 130 (292)
T d1xvaa_ 54 QHGCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF 130 (292)
T ss_dssp HTTCCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCE
T ss_pred hcCCCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCc
Confidence 33467999999999999999999974 57999997 5999887652 211 111 1110 001234899
Q ss_pred Ceeeec-cccccccc------cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 134 DLLHAD-HLFSTIKK------SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 134 DlVh~~-~v~~h~~~------d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|+|.|. .+|.|++. +...+|.|+.|+|||||.||+...+
T Consensus 131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 999986 57888752 5678999999999999999997543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.42 E-value=7.6e-14 Score=121.70 Aligned_cols=106 Identities=14% Similarity=0.184 Sum_probs=76.1
Q ss_pred hhhcccCCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHH----HHcCccceeccccccCCCCCCcc
Q 027609 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPII----YERGLFGLYHDWCESFNTYPRTY 133 (221)
Q Consensus 60 Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a----~eRGl~~~~~d~~e~f~~yp~sF 133 (221)
..+.|+|+ ...+|||+|||.|+++.+++++ |+. |++++.+ ++++.| .+.|+.+.+.--+..+..+|.+|
T Consensus 54 ~~~~l~l~--~G~~VLDiGCG~G~~a~~~a~~~g~~---v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f 128 (285)
T d1kpga_ 54 ALGKLGLQ--PGMTLLDVGCGWGATMMRAVEKYDVN---VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 128 (285)
T ss_dssp HHTTTTCC--TTCEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHcCCC--CCCEEEEecCcchHHHHHHHhcCCcc---eEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence 33444454 4799999999999999988775 654 4666665 355544 44455443221111233457999
Q ss_pred Ceeeeccccccccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 134 DLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 134 DlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|-|.|-.+|.|... +...++.|+.|+|||||.+++.+
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 99999999999864 77899999999999999999853
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.2e-13 Score=114.77 Aligned_cols=122 Identities=15% Similarity=0.111 Sum_probs=87.0
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC--ccce-------------------------
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG--LFGL------------------------- 118 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG--l~~~------------------------- 118 (221)
.....++|||+|||+|.+...++.+.+. +|+++|.+ +|++.+..+- -.+.
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~--~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 128 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 128 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCS--EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCC--eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence 4456889999999999887666655432 68999987 5998886540 0000
Q ss_pred ----------eccccc--cCCC--C-CCccCeeeeccccccccc---cHHHHHHHhhhhccCCeEEEEEcCh--------
Q 027609 119 ----------YHDWCE--SFNT--Y-PRTYDLLHADHLFSTIKK---SLKAVVAEVDRILRPDGNLILRDDA-------- 172 (221)
Q Consensus 119 ----------~~d~~e--~f~~--y-p~sFDlVh~~~v~~h~~~---d~~~vL~EmdRVLRPGG~~ii~d~~-------- 172 (221)
..|... .+.+ + +++||+|.|..|++|... ++..+|.++.|+|||||++|+.+..
T Consensus 129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~ 208 (263)
T d2g72a1 129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG 208 (263)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET
T ss_pred HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC
Confidence 011111 1111 3 378999999999998864 6788999999999999999998531
Q ss_pred -------h-hHHHHHHHHHhcCCeEE
Q 027609 173 -------E-TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 173 -------~-~~~~i~~i~~~l~W~~~ 190 (221)
. ..+.|++++..-..++.
T Consensus 209 ~~~~~~~~~t~e~v~~~l~~aGf~v~ 234 (263)
T d2g72a1 209 EARLTVVPVSEEEVREALVRSGYKVR 234 (263)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred CcccccCCCCHHHHHHHHHHCCCeEE
Confidence 1 25888899988888764
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.30 E-value=1.3e-12 Score=110.35 Aligned_cols=122 Identities=10% Similarity=0.058 Sum_probs=86.5
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc-eeccccccCCCCC-CccCeeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG-LYHDWCESFNTYP-RTYDLLHA 138 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~-~~~d~~e~f~~yp-~sFDlVh~ 138 (221)
+.-....+|||+|||+|.++.+|++..-. ..|.++|.+ .|++.+.++ +.+. +..|... ..+|+ .+||++.+
T Consensus 70 l~ikpG~~VLDlGcGsG~~~~~la~~~~~-g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~-~~~~~~~~~~v~~i 147 (230)
T d1g8sa_ 70 MPIKRDSKILYLGASAGTTPSHVADIADK-GIVYAIEYAPRIMRELLDACAERENIIPILGDANK-PQEYANIVEKVDVI 147 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTC-GGGGTTTCCCEEEE
T ss_pred CCCCCCCEEEEeCEEcCHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhhhcccceEEEeecc-CcccccccceeEEe
Confidence 33445889999999999999999986311 256888886 587766665 3222 4455433 33355 88888777
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEEcC----------hhhHHHHHHHHHhcCCeEE
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD----------AETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~----------~~~~~~i~~i~~~l~W~~~ 190 (221)
.+.++|.. ++..++.|+.|+|||||++++.+. ....+++.+.+++-..+..
T Consensus 148 ~~~~~~~~-~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~iv 208 (230)
T d1g8sa_ 148 YEDVAQPN-QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIV 208 (230)
T ss_dssp EECCCSTT-HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEE
T ss_pred eccccchH-HHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 77777776 899999999999999999999832 1224556666766677654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.26 E-value=5e-12 Score=105.01 Aligned_cols=114 Identities=9% Similarity=0.084 Sum_probs=77.9
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHH----HHHHcCccce--e-ccccccCC-CCC-CccCeeeeccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLP----IIYERGLFGL--Y-HDWCESFN-TYP-RTYDLLHADHL 141 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~----~a~eRGl~~~--~-~d~~e~f~-~yp-~sFDlVh~~~v 141 (221)
..|||+|||+|.++..|+++.-- .+++++|.+ .++. .+.++|+.++ + .|. ..+. .|| +++|.|++...
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~-~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da-~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA-DTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG-GGHHHHCCTTSCCEEEEESC
T ss_pred ceEEEEEecCcHHHHHHHHhCCC-CcEEEeecchHHHHHHHHHHHHHhccCchhcccch-hhhhcccCchhhhccccccc
Confidence 46999999999999999887322 267899875 3444 4556677542 2 232 2222 266 99999998755
Q ss_pred cccccc-c------HHHHHHHhhhhccCCeEEEEE-cChhhHHHHHHHHHhcCC
Q 027609 142 FSTIKK-S------LKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHW 187 (221)
Q Consensus 142 ~~h~~~-d------~~~vL~EmdRVLRPGG~~ii~-d~~~~~~~i~~i~~~l~W 187 (221)
..+... . -..+|.|+.|+|||||.|+|. |..++.+.+...+.....
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~ 162 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL 162 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCC
Confidence 543221 0 147999999999999999776 566667777777665443
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.22 E-value=1.4e-11 Score=102.33 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=79.6
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHH----HHHcCccc--eeccccccCCC-CC-CccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPI----IYERGLFG--LYHDWCESFNT-YP-RTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~----a~eRGl~~--~~~d~~e~f~~-yp-~sFDlVh~~~v 141 (221)
...|||+|||.|.++..|++..-- .+++++|.+ .++.. +.+.|+.+ +++.-++.+.. +| .++|.|++...
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~-~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCC-CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 346999999999999999887322 267888876 35554 44556644 23321222333 57 99999997633
Q ss_pred ccccccc--------HHHHHHHhhhhccCCeEEEEE-cChhhHHHHHHHHHhcCCeEE
Q 027609 142 FSTIKKS--------LKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 142 ~~h~~~d--------~~~vL~EmdRVLRPGG~~ii~-d~~~~~~~i~~i~~~l~W~~~ 190 (221)
. .|++. -..+|.++.|+|||||.+++. |..++.+.+........+...
T Consensus 111 d-Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~ 167 (204)
T d1yzha1 111 D-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 167 (204)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred c-cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcccc
Confidence 2 22211 158999999999999999875 566667777666666676643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.21 E-value=5.2e-12 Score=104.95 Aligned_cols=102 Identities=13% Similarity=0.120 Sum_probs=67.6
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccce-eccccccCCCCCCccCeeee-
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFGL-YHDWCESFNTYPRTYDLLHA- 138 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~~-~~d~~e~f~~yp~sFDlVh~- 138 (221)
+.-.+..+|||+|||+|+++.+|++.--.. .|+++|.+ .|++.+.+ ++.+.. ..| +.....|+..+|.+.+
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g-~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d-~~~~~~~~~~~~~vd~v 129 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVRERNNIIPLLFD-ASKPWKYSGIVEKVDLI 129 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTS-EEEEECCCHHHHHHHHHHHHHCSSEEEECSC-TTCGGGTTTTCCCEEEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccCC-eEEEEeCCHHHHHHHHHHhhccCCceEEEee-ccCccccccccceEEEE
Confidence 333447899999999999999998751111 47899986 47765544 443333 333 2222234455544432
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.+.+.|.. ++..++.|+.|+|||||++++.+
T Consensus 130 ~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 130 YQDIAQKN-QIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp EECCCSTT-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EecccChh-hHHHHHHHHHHHhccCCeEEEEE
Confidence 23355555 78999999999999999999975
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.20 E-value=1.5e-11 Score=99.06 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=83.4
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-c--eeccccccCCCCC-CccCee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-G--LYHDWCESFNTYP-RTYDLL 136 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~--~~~d~~e~f~~yp-~sFDlV 136 (221)
+...+..+|||+|||+|.++.+|+.+.. .|+++|.+ ++++.|.++ |+. . .++..+..+ .++ .+||+|
T Consensus 29 l~~~~g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~-~~~~~~~D~v 104 (186)
T d1l3ia_ 29 AEPGKNDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA-LCKIPDIDIA 104 (186)
T ss_dssp HCCCTTCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-HTTSCCEEEE
T ss_pred cCCCCCCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc-ccccCCcCEE
Confidence 3445688999999999999999988754 46788886 588877765 442 2 222111212 245 899999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeEE
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~~ 190 (221)
.|..... +...++.++.+.|||||++++.... +....+.+.++...|+..
T Consensus 105 ~~~~~~~----~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 105 VVGGSGG----ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp EESCCTT----CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred EEeCccc----cchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 9986544 4568999999999999999998753 345556667777777543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.17 E-value=8.6e-12 Score=106.96 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=75.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc----eeccccccCCCCC-CccCee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG----LYHDWCESFNTYP-RTYDLL 136 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~----~~~d~~e~f~~yp-~sFDlV 136 (221)
-....+|||+|||+|+++.+|+.. +-. ..|..+|.+ ++++.|.++ +... ...|.++. ++ ++||.|
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~---~~~~~fD~V 158 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF---ISDQMYDAV 158 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC---CCSCCEEEE
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc---cccceeeee
Confidence 345789999999999999998864 111 145777876 488888775 2222 22355442 34 999999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCe
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWD 188 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~ 188 (221)
.++ .+ +|..+|.++.|+|||||.+++..+. ..+.++-..++.-.|.
T Consensus 159 ~ld-----~p-~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 159 IAD-----IP-DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 205 (250)
T ss_dssp EEC-----CS-CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred eec-----CC-chHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCc
Confidence 864 56 7889999999999999999987654 2233333334444453
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.15 E-value=1.8e-11 Score=103.30 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=85.9
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Ccc-ceeccccc--cCCCCCCccCee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLF-GLYHDWCE--SFNTYPRTYDLL 136 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~~~~d~~e--~f~~yp~sFDlV 136 (221)
+.-....+|||+|||+|+++.+|++. |- ...|.++|.+ .+++.+.++ +.+ .+..|-.. .+......+|+|
T Consensus 69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~-~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i 147 (227)
T d1g8aa_ 69 FPIKPGKSVLYLGIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred cccCCCCEEEEeccCCCHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEE
Confidence 34456899999999999999999885 21 1145777775 466655444 322 23333221 122123788988
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEcC----------hhhHHHHHHHHHhcCCeEEE-ee---cCCCeeEEE
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD----------AETIVEVEDLVKSLHWDVRM-IY---TNDNQGMLC 202 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~----------~~~~~~i~~i~~~l~W~~~~-~~---~~~~e~~l~ 202 (221)
++. +.|.. ++..++.++.|+|||||++++... ......++++.+. .++..- .+ .+.+--+++
T Consensus 148 ~~d--~~~~~-~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~p~~~~H~~vv 223 (227)
T d1g8aa_ 148 FED--VAQPT-QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLEPYEKDHALFV 223 (227)
T ss_dssp EEC--CCSTT-HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECTTTSSSEEEEE
T ss_pred EEE--ccccc-hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCCCceEEEE
Confidence 874 44444 788999999999999999999731 2234555665543 566532 11 122456788
Q ss_pred EEec
Q 027609 203 VHKT 206 (221)
Q Consensus 203 ~~K~ 206 (221)
|+|+
T Consensus 224 ~rK~ 227 (227)
T d1g8aa_ 224 VRKT 227 (227)
T ss_dssp EECC
T ss_pred EEeC
Confidence 8885
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.14 E-value=1e-11 Score=107.45 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=70.7
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc------Ccc-c---eeccccccCCCCC-Ccc
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER------GLF-G---LYHDWCESFNTYP-RTY 133 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR------Gl~-~---~~~d~~e~f~~yp-~sF 133 (221)
+-....+|||+|||+|+++.+|+.. +-. ..|..+|.+ ++++.|+++ +.. . ...|..+ ..+| ++|
T Consensus 93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~-G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~--~~~~~~~f 169 (264)
T d1i9ga_ 93 DIFPGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD--SELPDGSV 169 (264)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG--CCCCTTCE
T ss_pred CCCCCCEEEecCcCCcHHHHHHHHhhCCC-cEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc--ccccCCCc
Confidence 3445889999999999999999875 211 146778876 588888763 111 1 1224332 3477 999
Q ss_pred CeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 134 DLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 134 DlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|.|.+ |++ +|..++.++.|+|||||.+++-.+.
T Consensus 170 DaV~l-----dlp-~P~~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 170 DRAVL-----DML-APWEVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp EEEEE-----ESS-CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred ceEEE-----ecC-CHHHHHHHHHhccCCCCEEEEEeCc
Confidence 99875 467 8999999999999999999887654
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=4.6e-11 Score=104.22 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=69.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHH----HHcCccc---eeccccccCCCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPII----YERGLFG---LYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a----~eRGl~~---~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
+..+|||+|||+|.++..++++|+. .|+++|.+.+++.+ .+.|+.. .++.-.+.+ ++| .+||+|.|..+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l-~~~~~~~D~i~se~~ 114 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEWM 114 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECCC
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhc-cCcccceeEEEEEec
Confidence 4678999999999999999998864 35777776655444 4455533 233222223 366 89999999866
Q ss_pred cccccc--cHHHHHHHhhhhccCCeEEEE
Q 027609 142 FSTIKK--SLKAVVAEVDRILRPDGNLIL 168 (221)
Q Consensus 142 ~~h~~~--d~~~vL~EmdRVLRPGG~~ii 168 (221)
++++.. ....++.+++|+|||||.++=
T Consensus 115 ~~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 115 GYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 654443 788999999999999999863
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=1.3e-11 Score=102.47 Aligned_cols=98 Identities=16% Similarity=0.093 Sum_probs=65.7
Q ss_pred hcccCCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccce---eccccccCCCCCCc
Q 027609 62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFGL---YHDWCESFNTYPRT 132 (221)
Q Consensus 62 ~~L~i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~---~~d~~e~f~~yp~s 132 (221)
..|++++ ..+|||+|||+|.+++.|++. +-. ..|+.+|.+ ++++.+.++ |+.+. ..|..+ ..+..++
T Consensus 69 ~~l~l~~--g~~VLdiG~GtG~~s~~la~~~~~~-g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~-~~~~~~~ 144 (213)
T d1dl5a1 69 EWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEK-GLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY-GVPEFSP 144 (213)
T ss_dssp HHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CCGGGCC
T ss_pred Hhhhccc--cceEEEecCccchhHHHHHHHhCCC-CcEEEeecchhhHHHhhhhHhhhcccccccccCchHH-ccccccc
Confidence 3444444 789999999999999988764 211 135677765 477777665 33222 223222 2222389
Q ss_pred cCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 133 YDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 133 FDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
||+|+|..++.|.++ ++.|+|||||.+++-.
T Consensus 145 fD~I~~~~~~~~~p~-------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 145 YDVIFVTVGVDEVPE-------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp EEEEEECSBBSCCCH-------HHHHHEEEEEEEEEEB
T ss_pred hhhhhhhccHHHhHH-------HHHHhcCCCcEEEEEE
Confidence 999999999887762 4568899999999853
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=9.2e-11 Score=101.25 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=69.7
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CH---HHHHHcCccc---eeccccccCCCCC-CccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TL---PIIYERGLFG---LYHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l---~~a~eRGl~~---~~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
.+..+|||+|||+|.++..+++.|+. .|.++|.++ +. +.+.+.|+.. .++.-.+.+ ++| .+||+|.|..
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l-~~~~~~~D~Ivse~ 110 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-HLPVEKVDVIISEW 110 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSCSCEEEEEECC
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHh-cCccccceEEEEee
Confidence 35778999999999999999998864 357777765 33 3445555532 333222323 356 9999999986
Q ss_pred ccccccc--cHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKK--SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~--d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+.++... .+..++..++|+|||||.++-.
T Consensus 111 ~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~ 141 (311)
T d2fyta1 111 MGYFLLFESMLDSVLYAKNKYLAKGGSVYPD 141 (311)
T ss_dssp CBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred eeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence 6665443 5778888899999999999854
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.09 E-value=2.4e-11 Score=104.62 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=76.4
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccccee----ccccccCCCCC-CccCee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGLY----HDWCESFNTYP-RTYDLL 136 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~----~d~~e~f~~yp-~sFDlV 136 (221)
+-....+|||+|||+|+++.+|+..-.....|..+|.+ ++++.|.++ |+...+ .|.++ .++ ..||.|
T Consensus 100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~---~~~~~~~D~V 176 (266)
T d1o54a_ 100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE---GFDEKDVDAL 176 (266)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG---CCSCCSEEEE
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc---cccccceeee
Confidence 34458999999999999999997641111246888886 577777654 443321 23222 344 777765
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEcC-hhhHHHHHHHHHhcCCe
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWD 188 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-~~~~~~i~~i~~~l~W~ 188 (221)
|.|.+ +|..+|.++.|+|||||.+++-.+ ...+.++-+.++...|.
T Consensus 177 -----~~d~p-~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 177 -----FLDVP-DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp -----EECCS-CGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred -----EecCC-CHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 45677 899999999999999999987644 33445554555656674
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=1.3e-10 Score=100.90 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=69.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCH----HHHHHcCccc---eeccccccCCCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTL----PIIYERGLFG---LYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l----~~a~eRGl~~---~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
+.++|||+|||+|.++..+++.|+. .|+++|.+.+. +.+...|+.. .++.-.+.+ ++| ++||+|.|..+
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~-~~~~~~~D~ivs~~~ 109 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWM 109 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCC
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHc-ccccceeEEEeeeee
Confidence 4678999999999999999988864 35677765433 3445556644 222212223 356 99999999766
Q ss_pred cccccc--cHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKK--SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~--d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.+++.. ....++.+++|+|||||.++-.
T Consensus 110 ~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~ 139 (316)
T d1oria_ 110 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 139 (316)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred eeeeccHHHHHHHHHHHHhcCCCCeEEEee
Confidence 554442 6889999999999999998743
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=8.3e-11 Score=104.14 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=70.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc--------------Cc---cce-eccccccCC
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER--------------GL---FGL-YHDWCESFN 127 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR--------------Gl---~~~-~~d~~e~f~ 127 (221)
-....+|||+|||+|+++.+|+.. +.. ..|..+|.+ ++++.|.++ +. +.. ..|.++...
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~-G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~ 174 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 174 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCC-cEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence 334789999999999999999874 111 135777775 578777654 11 111 234444333
Q ss_pred CCC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHH-----hcCCeE
Q 027609 128 TYP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVK-----SLHWDV 189 (221)
Q Consensus 128 ~yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~-----~l~W~~ 189 (221)
.++ .+||.|+.+ .+ +|..+|.++.|+|||||.+++--+. ++.+++++. .+.|..
T Consensus 175 ~~~~~~fD~V~LD-----~p-~P~~~l~~~~~~LKpGG~lv~~~P~--i~Qv~~~~~~l~~~~~~f~~ 234 (324)
T d2b25a1 175 DIKSLTFDAVALD-----ML-NPHVTLPVFYPHLKHGGVCAVYVVN--ITQVIELLDGIRTCELALSC 234 (324)
T ss_dssp ------EEEEEEC-----SS-STTTTHHHHGGGEEEEEEEEEEESS--HHHHHHHHHHHHHHTCCEEE
T ss_pred ccCCCCcceEeec-----Cc-CHHHHHHHHHHhccCCCEEEEEeCC--HHHHHHHHHHHHHcCCCcee
Confidence 345 889988753 56 7888999999999999999876433 344444332 346754
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2.4e-10 Score=95.63 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=61.5
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-----c---eeccccccCCCCC-CccC
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-----G---LYHDWCESFNTYP-RTYD 134 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-----~---~~~d~~e~f~~yp-~sFD 134 (221)
.+..+|||+|||+|.+++.|++.--....|+.+|.. ++++.+.++ ++. . ...|..+ ..++ ++||
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~--~~~~~~~fD 152 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM--GYAEEAPYD 152 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG--CCGGGCCEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc--ccchhhhhh
Confidence 457899999999999888877641001135777775 477766544 221 1 1223222 1224 8999
Q ss_pred eeeeccccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 135 LLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 135 lVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.|++...+.+.++ ++.+.|||||.+|+-
T Consensus 153 ~I~~~~~~~~ip~-------~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 153 AIHVGAAAPVVPQ-------ALIDQLKPGGRLILP 180 (224)
T ss_dssp EEEECSBBSSCCH-------HHHHTEEEEEEEEEE
T ss_pred hhhhhcchhhcCH-------HHHhhcCCCcEEEEE
Confidence 9999998887762 456899999999984
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=2.6e-09 Score=92.32 Aligned_cols=130 Identities=12% Similarity=0.201 Sum_probs=91.3
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc--cee-ccccccCCCCC-CccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF--GLY-HDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~--~~~-~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
..+|||+|||+|.++..|+...-. ..++++|.+ ..+++|.+. |+. ..+ .||.+ +++ +.||+|.|+-=
T Consensus 109 ~~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~---~~~~~~fDlIvsNPP 184 (274)
T d2b3ta1 109 PCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS---ALAGQQFAMIVSNPP 184 (274)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG---GGTTCCEEEEEECCC
T ss_pred ccceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc---ccCCCceeEEEecch
Confidence 456999999999999999775211 257899986 477776654 332 222 35533 455 79999999722
Q ss_pred c-------------ccccc-----------cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCe-EE-EeecC
Q 027609 142 F-------------STIKK-----------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWD-VR-MIYTN 195 (221)
Q Consensus 142 ~-------------~h~~~-----------d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~-~~-~~~~~ 195 (221)
. .|-+. ....++.+..+.|+|||++++==.....+.+.++++...|. +. ..|-.
T Consensus 185 Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kDl~ 264 (274)
T d2b3ta1 185 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYG 264 (274)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEECCC
Confidence 1 11110 34568899999999999999954444567889999888886 32 45667
Q ss_pred CCeeEEEEE
Q 027609 196 DNQGMLCVH 204 (221)
Q Consensus 196 ~~e~~l~~~ 204 (221)
+.+++++++
T Consensus 265 g~~R~v~~r 273 (274)
T d2b3ta1 265 DNERVTLGR 273 (274)
T ss_dssp SSEEEEEEE
T ss_pred CCceEEEEe
Confidence 789999885
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.88 E-value=3.4e-10 Score=96.04 Aligned_cols=96 Identities=11% Similarity=0.187 Sum_probs=69.4
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCc---c-ceeccccccCCCCCCccCeeeeccccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGL---F-GLYHDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl---~-~~~~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
...+++|||+|||+|.++.+|+++.-. +.++-.|.+++++ +.+. + -+.+|. |.+.| ..|++.+.+++|
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~-l~~~v~Dlp~vi~---~~~~~~ri~~~~gd~---~~~~p-~~D~~~l~~vLh 150 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPL-IKGINFDLPQVIE---NAPPLSGIEHVGGDM---FASVP-QGDAMILKAVCH 150 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHT---TCCCCTTEEEEECCT---TTCCC-CEEEEEEESSGG
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCC-CeEEEecchhhhh---ccCCCCCeEEecCCc---ccccc-cceEEEEehhhh
Confidence 467899999999999999999887211 1334445443332 2222 1 133552 44556 459999999999
Q ss_pred cccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 144 TIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 144 h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+|.+ +-..+|..+.+.|+|||.++|.|.
T Consensus 151 ~~~de~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 151 NWSDEKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9986 677899999999999999999873
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=2.4e-10 Score=104.13 Aligned_cols=102 Identities=12% Similarity=0.034 Sum_probs=68.7
Q ss_pred ccCCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCc------------cc-eeccccccCCC
Q 027609 64 MGINWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGL------------FG-LYHDWCESFNT 128 (221)
Q Consensus 64 L~i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl------------~~-~~~d~~e~f~~ 128 (221)
++|++ ..+|||+|||.|.++..++.+ |+. .++++|.+ .+++.|.++.- .+ ...+....|..
T Consensus 212 l~Lkp--gd~fLDLGCG~G~~vl~aA~~~g~~--~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~ 287 (406)
T d1u2za_ 212 CQLKK--GDTFMDLGSGVGNCVVQAALECGCA--LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD 287 (406)
T ss_dssp TTCCT--TCEEEEESCTTSHHHHHHHHHHCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred hCCCC--CCEEEeCCCCCcHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhh
Confidence 44545 678999999999999888765 532 46888886 48888876521 00 00011111111
Q ss_pred ---CC---CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 129 ---YP---RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 129 ---yp---~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++ ..+|+|.++. +.|.+ +...+|.||.|+|||||.+|..+.
T Consensus 288 ~~~~d~~~~~adVV~inn-~~f~~-~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 288 NNRVAELIPQCDVILVNN-FLFDE-DLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp CHHHHHHGGGCSEEEECC-TTCCH-HHHHHHHHHHTTCCTTCEEEESSC
T ss_pred ccccccccccceEEEEec-ccCch-HHHHHHHHHHHhcCCCcEEEEecc
Confidence 11 4567888763 55566 899999999999999999998763
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=3.5e-10 Score=99.26 Aligned_cols=95 Identities=11% Similarity=0.093 Sum_probs=65.2
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc-----------Cc----cceeccccccCC--CC
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER-----------GL----FGLYHDWCESFN--TY 129 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR-----------Gl----~~~~~d~~e~f~--~y 129 (221)
.....|||+|||.|.++..++.. +.. +++++|.+ .+++.|.++ |+ +...+. .+. +|
T Consensus 150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~--~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g---d~~~~~~ 224 (328)
T d1nw3a_ 150 TDDDLFVDLGSGVGQVVLQVAAATNCK--HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG---DFLSEEW 224 (328)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCCS--EEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC---CTTSHHH
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC---ccccccc
Confidence 34668999999999999877654 432 46888886 477766553 11 112221 122 23
Q ss_pred C-Ccc--CeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 130 P-RTY--DLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 130 p-~sF--DlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
. ..| |+|.++ .+.|.+ ++...|.||.|+|||||.+|+.+
T Consensus 225 ~~~~~~advi~~~-~~~f~~-~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 225 RERIANTSVIFVN-NFAFGP-EVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHHHCSEEEEC-CTTTCH-HHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccCcceEEEEc-ceecch-HHHHHHHHHHHhCCCCcEEEEec
Confidence 3 444 677765 455666 88999999999999999999875
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.76 E-value=3.1e-09 Score=89.25 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=61.6
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc--Cccc--ee-ccccccCCCCC--CccCeeeec
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER--GLFG--LY-HDWCESFNTYP--RTYDLLHAD 139 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR--Gl~~--~~-~d~~e~f~~yp--~sFDlVh~~ 139 (221)
-....+|||+|||+|.+++.|+..... |+.++.. ++++.|.++ ...+ +. .|. +..+| ..||.|++.
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~l~~~---V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~---~~g~~~~~pfD~Iiv~ 141 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAEIVDK---VVSVEINEKMYNYASKLLSYYNNIKLILGDG---TLGYEEEKPYDRVVVW 141 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHHHHHTTCSSEEEEESCG---GGCCGGGCCEEEEEES
T ss_pred hcccceEEEecCCCCHHHHHHHHHhcc---cccccccHHHHHHHHHHHhcccccccccCch---hhcchhhhhHHHHHhh
Confidence 334779999999999999998887544 5667764 466666655 1211 22 232 22344 779999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
....++++ ++.+.|||||.+|+-
T Consensus 142 ~a~~~ip~-------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 142 ATAPTLLC-------KPYEQLKEGGIMILP 164 (224)
T ss_dssp SBBSSCCH-------HHHHTEEEEEEEEEE
T ss_pred cchhhhhH-------HHHHhcCCCCEEEEE
Confidence 88887762 234679999999884
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.69 E-value=6.8e-09 Score=87.14 Aligned_cols=98 Identities=10% Similarity=0.121 Sum_probs=69.5
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcC-ccceeccccccCCCCCCccCeeeeccccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERG-LFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK 147 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRG-l~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~ 147 (221)
...++|||+|||.|.++.+|+++--. +.++-.|.+.+++.+.+.. +..+.+|. |.+.|. .|++....++++|.+
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~vi~~~~~~~r~~~~~~d~---~~~~P~-ad~~~l~~vlh~~~d 154 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPT-IKGINFDLPHVIEDAPSYPGVEHVGGDM---FVSIPK-ADAVFMKWICHDWSD 154 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTT-SEEEEEECTTTTTTCCCCTTEEEEECCT---TTCCCC-CSCEECSSSSTTSCH
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCC-CeEEEcccHHhhhhcccCCceEEecccc---cccCCC-cceEEEEEEeecCCH
Confidence 45899999999999999999887211 1345556665554333222 22344554 344563 466777889998886
Q ss_pred -cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 148 -SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 148 -d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+...+|+++.+.|+|||.++|.|.
T Consensus 155 ~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 155 EHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp HHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEE
Confidence 788999999999999999999853
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.62 E-value=5.8e-09 Score=91.20 Aligned_cols=119 Identities=22% Similarity=0.235 Sum_probs=76.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccce---ecc---ccccCCCCCCccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGL---YHD---WCESFNTYPRTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~---~~d---~~e~f~~yp~sFDlVh~ 138 (221)
+.++|||++||+|+|+.+++..+ .+|+.+|.+ .+++.+.+. |+... ..| +.+.+.....+||+|.+
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 57899999999999999987532 367889987 477766544 55321 122 11112212379999998
Q ss_pred c-ccccccc-------ccHHHHHHHhhhhccCCeEEEEEcChh------hHHHHHHHHHhcCCeEEE
Q 027609 139 D-HLFSTIK-------KSLKAVVAEVDRILRPDGNLILRDDAE------TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 139 ~-~v~~h~~-------~d~~~vL~EmdRVLRPGG~~ii~d~~~------~~~~i~~i~~~l~W~~~~ 191 (221)
+ -+|..-. .+...++..+.++|||||.++++.+.. +.+.+.+-+..-+.+..+
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~ 288 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRV 288 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEE
Confidence 6 2332111 155678899999999999999987653 334444444555555543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.61 E-value=3.2e-08 Score=85.34 Aligned_cols=149 Identities=9% Similarity=0.123 Sum_probs=96.8
Q ss_pred hhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---e
Q 027609 47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---L 118 (221)
Q Consensus 47 ~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~ 118 (221)
.||+.+-..+.. +.. .....+|+|+|||+|..+..++..+-. +++.+|.+ +.+++|.+. |+.. +
T Consensus 93 peTE~lv~~~~~-~~~-----~~~~~~vld~g~GsG~i~~~la~~~~~--~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i 164 (271)
T d1nv8a_ 93 PETEELVELALE-LIR-----KYGIKTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFFV 164 (271)
T ss_dssp TTHHHHHHHHHH-HHH-----HHTCCEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEE
T ss_pred hhhhhhhhhhhh-hhc-----cccccEEEEeeeeeehhhhhhhhcccc--eeeechhhhhHHHHHHHHHHHcCCCceeEE
Confidence 677777666654 332 223567999999999998888766422 46888886 477777654 4422 2
Q ss_pred e-ccccccCCCCCCccCeeeecc-----------ccccccc-------cHHHHHHH-hhhhccCCeEEEEEcChhhHHHH
Q 027609 119 Y-HDWCESFNTYPRTYDLLHADH-----------LFSTIKK-------SLKAVVAE-VDRILRPDGNLILRDDAETIVEV 178 (221)
Q Consensus 119 ~-~d~~e~f~~yp~sFDlVh~~~-----------v~~h~~~-------d~~~vL~E-mdRVLRPGG~~ii~d~~~~~~~i 178 (221)
. .||.+.++.....||+|.|+= ...|.+. |.-.++.+ +.+.|+|||++++=-.....+.+
T Consensus 165 ~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v 244 (271)
T d1nv8a_ 165 RKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEEL 244 (271)
T ss_dssp EESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHH
T ss_pred eecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHHH
Confidence 2 345443332237899999871 1111110 11122222 45789999999987666667888
Q ss_pred HHHHHhcCCeEEEeecCCCeeEEEEEec
Q 027609 179 EDLVKSLHWDVRMIYTNDNQGMLCVHKT 206 (221)
Q Consensus 179 ~~i~~~l~W~~~~~~~~~~e~~l~~~K~ 206 (221)
+++++...| ..|-.+.+++++++|+
T Consensus 245 ~~l~~~~g~---~kDl~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 245 KKIVSDTVF---LKDSAGKYRFLLLNRR 269 (271)
T ss_dssp TTTSTTCEE---EECTTSSEEEEEEECC
T ss_pred HHHHHhCCE---EeccCCCcEEEEEEEc
Confidence 888887766 4567789999999995
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.60 E-value=2e-08 Score=81.53 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=78.5
Q ss_pred chhhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchH----HHHHHhhC---CCeEEEeccCCCC-CCHHHHHHcCc-
Q 027609 45 FTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGG----FAAALKDL---KVWVMNVVPIESP-DTLPIIYERGL- 115 (221)
Q Consensus 45 f~~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~----faa~L~~~---~v~vmnv~~~d~~-~~l~~a~eRGl- 115 (221)
|=.|...|...... .+ ..+.--+|+++|||+|. +|..|.+. .-+-+.+.++|.+ ..++.|.+ |.
T Consensus 5 FFRd~~~f~~L~~~----~~--~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~-g~y 77 (193)
T d1af7a2 5 FFREAHHFPILAEH----AR--RRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS-GIY 77 (193)
T ss_dssp TTTTTTHHHHHHHH----HH--HSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH-TEE
T ss_pred CcCCcHHHHHHHHH----Hh--ccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc-Ccc
Confidence 55566777655533 11 23445689999999996 55555442 1233578899986 47776642 21
Q ss_pred --------cc------------------------------eeccccccCCCCC-CccCeeeeccccccccc-cHHHHHHH
Q 027609 116 --------FG------------------------------LYHDWCESFNTYP-RTYDLLHADHLFSTIKK-SLKAVVAE 155 (221)
Q Consensus 116 --------~~------------------------------~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~-d~~~vL~E 155 (221)
+. ..++..+ ..+.+ +.||+|.|..||+++.. ....++..
T Consensus 78 ~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~ 156 (193)
T d1af7a2 78 RLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLE-KQYNVPGPFDAIFCRNVMIYFDKTTQEDILRR 156 (193)
T ss_dssp EGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTC-SSCCCCCCEEEEEECSSGGGSCHHHHHHHHHH
T ss_pred cHHHHhhhhHHHHhhceeecCCCccceeehHHHHHHHHHHhhhhccc-cccCCCCCccEEEeehhHHhcCHHHHHHHHHH
Confidence 00 0111111 11233 89999999999998874 44789999
Q ss_pred hhhhccCCeEEEEEcCh
Q 027609 156 VDRILRPDGNLILRDDA 172 (221)
Q Consensus 156 mdRVLRPGG~~ii~d~~ 172 (221)
+.+.|+|||++++....
T Consensus 157 l~~~L~pGG~L~lG~sE 173 (193)
T d1af7a2 157 FVPLLKPDGLLFAGHSE 173 (193)
T ss_dssp HGGGEEEEEEEEECTTC
T ss_pred HHHHhCCCcEEEEecCc
Confidence 99999999999998653
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.54 E-value=3.5e-08 Score=86.14 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=68.2
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccccee----cc---ccccCCCCCCccCeeee
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGLY----HD---WCESFNTYPRTYDLLHA 138 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~----~d---~~e~f~~yp~sFDlVh~ 138 (221)
..+|||++||+|+|+.+++..|+. .|+.+|.+ .+++.+.+. |+...+ .| +.+.+..-..+||+|.+
T Consensus 146 g~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 679999999999999999988764 46888886 477766554 443211 22 11111111379999998
Q ss_pred cc-ccccccc-------cHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 139 DH-LFSTIKK-------SLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 139 ~~-v~~h~~~-------d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
+- ++..-.. +...++...-++|||||.++++.+..
T Consensus 224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 62 2321111 45668889999999999999987653
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.47 E-value=3.8e-08 Score=82.97 Aligned_cols=97 Identities=10% Similarity=0.159 Sum_probs=66.1
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccc-eeccccccCCCCCCccCeeeeccccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADHLFSTIKK 147 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~-~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~ 147 (221)
...++|+|+|||+|.++.+++++--. +.++-.|.++.++.+....-+. +.+| .|.+. ..+|++.+.++||+|.+
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~vi~~~~~~~rv~~~~gD---~f~~~-p~aD~~~l~~vLHdw~d 153 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPK-LKCIVFDRPQVVENLSGSNNLTYVGGD---MFTSI-PNADAVLLKYILHNWTD 153 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCBTTEEEEECC---TTTCC-CCCSEEEEESCGGGSCH
T ss_pred cCceEEEEecCCccHHHHHHHHhCCC-CeEEEecCHHHHHhCcccCceEEEecC---cccCC-CCCcEEEEEeecccCCh
Confidence 46789999999999999999887211 1345555543333221111111 3344 23333 46899999999999995
Q ss_pred -cHHHHHHHhhhhccCC---eEEEEEc
Q 027609 148 -SLKAVVAEVDRILRPD---GNLILRD 170 (221)
Q Consensus 148 -d~~~vL~EmdRVLRPG---G~~ii~d 170 (221)
+-..+|.-+.+.|+|| |.++|-|
T Consensus 154 ~~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 154 KDCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 4568899999999999 7777775
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.41 E-value=2.3e-07 Score=78.96 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=75.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccc---eec-cccccCCCCC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFG---LYH-DWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~---~~~-d~~e~f~~yp-~sFDlVh~~ 139 (221)
...+|||+|||+|+|+..+++++.- .|+++|.+ +.++.+.+ .|+-+ +++ | + +..-+ +.||.|..+
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~--~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D-~--~~~~~~~~~D~Ii~~ 181 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMD-N--RDFPGENIADRILMG 181 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC-T--TTCCCCSCEEEEEEC
T ss_pred CccEEEECcceEcHHHHHHHHhCCc--EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcc-h--HHhccCCCCCEEEEC
Confidence 3788999999999999998887642 46888875 45555443 35533 222 3 2 22223 889998875
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcC-------hhhHHHHHHHHHhcCCeEEE
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDD-------AETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-------~~~~~~i~~i~~~l~W~~~~ 191 (221)
. +.....+|.+.-++|+|||++.+-+. ....+.++++++...+++..
T Consensus 182 ~-----p~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~ 235 (260)
T d2frna1 182 Y-----VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 235 (260)
T ss_dssp C-----CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred C-----CCchHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEE
Confidence 2 22335677888899999999865421 12356677888888887754
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.36 E-value=1e-07 Score=74.35 Aligned_cols=97 Identities=20% Similarity=0.163 Sum_probs=61.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---eeccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LYHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||++||+|+|+...+.+|+. +|+.+|.+ ++++.+.+. |+.. +++.-+..+...+ +.||+|.++-
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 5789999999999999988889874 57888875 466554443 3322 2332122222234 8999999863
Q ss_pred ccc--cccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 141 LFS--TIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 141 v~~--h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
=+. .+. ..-..+.+ .++|+|||.+++..
T Consensus 92 Py~~~~~~-~~l~~i~~-~~~L~~~g~iiiE~ 121 (152)
T d2esra1 92 PYAKETIV-ATIEALAA-KNLLSEQVMVVCET 121 (152)
T ss_dssp SSHHHHHH-HHHHHHHH-TTCEEEEEEEEEEE
T ss_pred hhccchHH-HHHHHHHH-CCCcCCCeEEEEEe
Confidence 221 111 12222333 47999999999864
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.35 E-value=1.9e-07 Score=81.64 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=66.7
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc-----eeccccccCCCC---CCccCeee
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG-----LYHDWCESFNTY---PRTYDLLH 137 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~-----~~~d~~e~f~~y---p~sFDlVh 137 (221)
.++|||+.||+|+|+.+++..|+. .|+.+|.+ ..++.+.+. |+.. +..|..+.+..+ .+.||+|.
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~--~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCCc--eEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 789999999999999988877753 35777775 467666544 4421 122311111111 36899999
Q ss_pred ec-cccc-------cccccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 138 AD-HLFS-------TIKKSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 138 ~~-~v~~-------h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
++ =.|. ....+...++...-++|+|||+++++.+..
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 85 1221 111156678889999999999999987653
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.33 E-value=6.5e-08 Score=80.74 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=59.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhC----CC-eEEEeccCCCC-CCHHHHHHc---------Cccc--ee-ccccccCCCCC
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL----KV-WVMNVVPIESP-DTLPIIYER---------GLFG--LY-HDWCESFNTYP 130 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~----~v-~vmnv~~~d~~-~~l~~a~eR---------Gl~~--~~-~d~~e~f~~yp 130 (221)
.+..+|||+|||+|-++|.|+.. ++ ....|..++.. ++++.+.++ ++.+ .. .|..+ -++
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~---~~~ 155 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK---GYP 155 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG---CCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccc---ccc
Confidence 34789999999999999888653 21 01135666664 466666544 1111 22 23222 233
Q ss_pred --CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 131 --RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 131 --~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
..||.|++.....+.++ .+.+.|||||.+|+-
T Consensus 156 ~~~~fD~Iiv~~a~~~~p~-------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 156 PNAPYNAIHVGAAAPDTPT-------ELINQLASGGRLIVP 189 (223)
T ss_dssp GGCSEEEEEECSCBSSCCH-------HHHHTEEEEEEEEEE
T ss_pred cccceeeEEEEeechhchH-------HHHHhcCCCcEEEEE
Confidence 89999999998887762 245799999999874
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.24 E-value=3.5e-06 Score=68.48 Aligned_cols=118 Identities=12% Similarity=0.024 Sum_probs=72.3
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----ccceeccccccCCCCCCccCeeeecc
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LFGLYHDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~~~~~d~~e~f~~yp~sFDlVh~~~ 140 (221)
...-...+|||+|||+|+++.+++.+|.. .|+++|.+ .+++.+.+.- +...+. +.....++..||+|.|+-
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~--~v~~vdi~~~~~~~a~~N~~~~~~~~~~~--~~d~~~~~~~fD~Vi~nP 117 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVF--IGDVSEFNSRVDIVIMNP 117 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEE--ESCGGGCCCCCSEEEECC
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHcCCC--EEEEEcCcHHHHHHHHHHHHHcCCCceEE--ECchhhhCCcCcEEEEcC
Confidence 34445789999999999999988888753 56888886 5888777652 111111 112334678899999985
Q ss_pred ccccccc--cHHHHHHHhhhhccCCeEEEEE--cChhhHHHHHHHHHhcCCeEEE
Q 027609 141 LFSTIKK--SLKAVVAEVDRILRPDGNLILR--DDAETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 141 v~~h~~~--d~~~vL~EmdRVLRPGG~~ii~--d~~~~~~~i~~i~~~l~W~~~~ 191 (221)
=+..... +.. .+ .+.+.+++.++.. ......+-++++.+...|.+..
T Consensus 118 P~~~~~~~~d~~-~l---~~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~ 168 (201)
T d1wy7a1 118 PFGSQRKHADRP-FL---LKAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 168 (201)
T ss_dssp CCSSSSTTTTHH-HH---HHHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred ccccccccccHH-HH---HHHHhhcccchhcccchHHHHHHHHHHHhhcCceEEE
Confidence 5532221 222 22 2334445544333 3344456677788888887643
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.22 E-value=3.4e-07 Score=76.09 Aligned_cols=92 Identities=18% Similarity=0.219 Sum_probs=58.5
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----CccceeccccccCCCCC--CccCeeeec
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFGLYHDWCESFNTYP--RTYDLLHAD 139 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~~d~~e~f~~yp--~sFDlVh~~ 139 (221)
-.+..+|||+|||+|.++|.|+.. +.. |+.++.. ++.+.+.++ |+.++..-.+..+..+| +.||.|++.
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~g~~---V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~ 152 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIVKTD---VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVT 152 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSC---EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred cCccceEEEecCCCChhHHHHHHhhCce---eEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEee
Confidence 334779999999999999988764 322 3445543 355544443 44432211112222344 899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
....+.+. . |. .-|||||.+++-
T Consensus 153 ~a~~~ip~---~-l~---~qL~~gGrLv~p 175 (215)
T d1jg1a_ 153 AGAPKIPE---P-LI---EQLKIGGKLIIP 175 (215)
T ss_dssp SBBSSCCH---H-HH---HTEEEEEEEEEE
T ss_pred cccccCCH---H-HH---HhcCCCCEEEEE
Confidence 88887762 2 22 469999999874
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.21 E-value=3.9e-07 Score=74.42 Aligned_cols=117 Identities=17% Similarity=0.212 Sum_probs=80.1
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-----cceecccccc----CCCCC-CccC
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-----FGLYHDWCES----FNTYP-RTYD 134 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-----~~~~~d~~e~----f~~yp-~sFD 134 (221)
+.......+||++||+|+++.+++++--. ..|.++|.. +|++.+.++.- +-.++..... +..+. ++||
T Consensus 19 l~~~~~~~~lD~t~G~Gghs~~il~~~~~-~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vd 97 (192)
T d1m6ya2 19 LKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVD 97 (192)
T ss_dssp HCCCTTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEE
T ss_pred hCCCCCCEEEEecCCCcHHHHHHHhcCCC-CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcc
Confidence 34455789999999999999999886212 368999986 69999988731 1133321111 12355 8899
Q ss_pred eeeecccccc---------ccccHHHHHHHhhhhccCCeEEEEEcChhhHHH-HHHHHHh
Q 027609 135 LLHADHLFST---------IKKSLKAVVAEVDRILRPDGNLILRDDAETIVE-VEDLVKS 184 (221)
Q Consensus 135 lVh~~~v~~h---------~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~-i~~i~~~ 184 (221)
.|....-++- +. +....|.++.++|+|||.+++-.-+..-++ ++++++.
T Consensus 98 gIl~DlGvSs~Qld~~~r~~~-~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~ 156 (192)
T d1m6ya2 98 GILMDLGVSTYQLKGENRELE-NLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN 156 (192)
T ss_dssp EEEEECSCCHHHHHTSHTHHH-HHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eeeeccchhHhhhhhhhccch-hHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence 8876633321 12 677899999999999999988877665444 4555543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.19 E-value=1e-06 Score=72.33 Aligned_cols=109 Identities=14% Similarity=0.059 Sum_probs=64.2
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-cce-eccccccCCCCCCccCeeeecccccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-FGL-YHDWCESFNTYPRTYDLLHADHLFST 144 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-~~~-~~d~~e~f~~yp~sFDlVh~~~v~~h 144 (221)
.-..++|||+|||+|.++..++.+|.. +|+++|.+ .+++.+.+..- +.. ..| +..+++.||+|.|+-=|.-
T Consensus 46 dl~Gk~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~~~~~~~~D----~~~l~~~fD~Vi~NPPfg~ 119 (197)
T d1ne2a_ 46 NIGGRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCGGVNFMVAD----VSEISGKYDTWIMNPPFGS 119 (197)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCTTSEEEECC----GGGCCCCEEEEEECCCC--
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccccccEEEEe----hhhcCCcceEEEeCcccch
Confidence 345789999999999999888888754 57888886 58888877621 122 233 3346789999999854421
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHh
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKS 184 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~ 184 (221)
........+. +..+.+++.++..-.....+-+++.+..
T Consensus 120 ~~~~~D~~fl--~~a~~~~~~iy~ih~~~~~~~i~~~~~~ 157 (197)
T d1ne2a_ 120 VVKHSDRAFI--DKAFETSMWIYSIGNAKARDFLRREFSA 157 (197)
T ss_dssp -----CHHHH--HHHHHHEEEEEEEEEGGGHHHHHHHHHH
T ss_pred hhhhchHHHH--HHHHhcCCeEEEehhhhHHHHHHHHhhc
Confidence 1111111222 2445556555443223334445554443
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=1.7e-06 Score=71.77 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=80.8
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC---CCeEEEeccCCCC-CCHHHHH----HcCccc----eeccccccCCC----C-C
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESP-DTLPIIY----ERGLFG----LYHDWCESFNT----Y-P 130 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~---~v~vmnv~~~d~~-~~l~~a~----eRGl~~----~~~d~~e~f~~----y-p 130 (221)
..+.++||++|||+|--+.+++.. +. .++.+|.. +..+.|. +-|+.. ...|..+.++. . +
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g---~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~ 133 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADG---RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEA 133 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCT
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCc---eEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhccc
Confidence 344789999999999888888764 23 35666654 2444333 334422 12232232222 2 4
Q ss_pred CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh------------hh---HHH-HHHHHHhcCCeEEEeec
Q 027609 131 RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA------------ET---IVE-VEDLVKSLHWDVRMIYT 194 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~------------~~---~~~-i~~i~~~l~W~~~~~~~ 194 (221)
.+||+|....-=. +-...+.++.+.|||||.+++.+.. +. +.+ .+.+.+.-+|.+.+.--
T Consensus 134 ~~fD~ifiD~dk~----~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPi 209 (219)
T d2avda1 134 GTFDVAVVDADKE----NCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL 209 (219)
T ss_dssp TCEEEEEECSCST----THHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred CCccEEEEeCCHH----HHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeec
Confidence 8999999874333 4556777888999999999998642 11 222 34456667888765432
Q ss_pred CCCeeEEEEEe
Q 027609 195 NDNQGMLCVHK 205 (221)
Q Consensus 195 ~~~e~~l~~~K 205 (221)
++++++|+|
T Consensus 210 --gdGl~ia~K 218 (219)
T d2avda1 210 --GDGLTLAFK 218 (219)
T ss_dssp --TTCEEEEEE
T ss_pred --CCeeEEEEe
Confidence 346999988
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.14 E-value=7.6e-07 Score=73.39 Aligned_cols=116 Identities=19% Similarity=0.159 Sum_probs=71.7
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC---CCeEEEeccCCCC-CCHHHH----HHcCccc----eeccccccCCC----CC-
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESP-DTLPII----YERGLFG----LYHDWCESFNT----YP- 130 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~---~v~vmnv~~~d~~-~~l~~a----~eRGl~~----~~~d~~e~f~~----yp- 130 (221)
..+-++||++|||+|..+..|++. +.. ++.+|.. ++++.+ ..-|+-. ...|..+.++. ++
T Consensus 54 ~~kpk~ILEiGt~~G~Sti~la~al~~~g~---v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~ 130 (214)
T d2cl5a1 54 EYSPSLVLELGAYCGYSAVRMARLLQPGAR---LLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDV 130 (214)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTCCTTCE---EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCC
T ss_pred hhCCCEEEEEccCchhHHHHHHHhCCCccE---EEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccc
Confidence 345689999999999988888764 333 4566654 355544 3346533 22333333332 45
Q ss_pred CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC-----hhhHHHHHHHHHhcCCeEEE
Q 027609 131 RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-----~~~~~~i~~i~~~l~W~~~~ 191 (221)
++||+|+....-..+. ....+.|..|+|||||++|+.|. .++.+.++ ..-+|....
T Consensus 131 ~~~D~ifiD~~~~~~~--~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr---~~~~~~~~~ 191 (214)
T d2cl5a1 131 DTLDMVFLDHWKDRYL--PDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVR---GSSSFECTH 191 (214)
T ss_dssp CCEEEEEECSCGGGHH--HHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHH---HCTTEEEEE
T ss_pred cccceeeecccccccc--cHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHh---ccCceeehh
Confidence 7899999874433333 34568888999999998887653 23344333 345666553
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.00 E-value=4.6e-06 Score=72.54 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=84.2
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCC-CCHHHHHHc------Cc-----cc-eeccccccCCCCCCcc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP-DTLPIIYER------GL-----FG-LYHDWCESFNTYPRTY 133 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~-~~l~~a~eR------Gl-----~~-~~~d~~e~f~~yp~sF 133 (221)
....++||.+|+|.|+.+.++++.+ +. +++.++.. +.++++.+. |. .. ...|.-+-+...++.|
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~--~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y 152 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVE--KAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERY 152 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCC--EEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcc--eEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcc
Confidence 4468999999999999999998774 33 45555553 477777654 11 11 2234322122245899
Q ss_pred Ceeeeccccccccc-------cHHHHHHHhhhhccCCeEEEEEc------ChhhHHHHHHHHHhcCCeEEEee----c-C
Q 027609 134 DLLHADHLFSTIKK-------SLKAVVAEVDRILRPDGNLILRD------DAETIVEVEDLVKSLHWDVRMIY----T-N 195 (221)
Q Consensus 134 DlVh~~~v~~h~~~-------d~~~vL~EmdRVLRPGG~~ii~d------~~~~~~~i~~i~~~l~W~~~~~~----~-~ 195 (221)
|+|.+... ..+.. --..++..+.|.|+|||.++..- ...+...+.+.+++.=-.+.... + .
T Consensus 153 DvIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~ 231 (312)
T d1uira_ 153 DVVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFF 231 (312)
T ss_dssp EEEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGT
T ss_pred cEEEEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcC
Confidence 99997632 11110 11578899999999999999852 22345556666666655554332 1 2
Q ss_pred CCeeEEEEEecc
Q 027609 196 DNQGMLCVHKTY 207 (221)
Q Consensus 196 ~~e~~l~~~K~~ 207 (221)
..-.+++|.|..
T Consensus 232 ~~w~f~~aS~~~ 243 (312)
T d1uira_ 232 LNFGFLLASDAF 243 (312)
T ss_dssp EEEEEEEEESSS
T ss_pred CCCEeEEEeCCC
Confidence 235688999864
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=7.6e-07 Score=71.89 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=68.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHH---HHHcCccceeccccccCCCCC-CccCeeeeccccc--
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPI---IYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFS-- 143 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~---a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~-- 143 (221)
+..+|||+||++|+|...+.++-.....+.++|...+-.+ ..-.|-+......-.....+. ..||+|.|.....
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~s 101 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMS 101 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccchhhhhhhhhccCcceeEEEecccchhc
Confidence 4778999999999999988775111012334443222110 000111110000000000123 7899999997753
Q ss_pred ------cccc--cHHHHHHHhhhhccCCeEEEEE--cChhhHHHHHHHHHhcCCeEEEe--e---cCCCeeEEEEEe
Q 027609 144 ------TIKK--SLKAVVAEVDRILRPDGNLILR--DDAETIVEVEDLVKSLHWDVRMI--Y---TNDNQGMLCVHK 205 (221)
Q Consensus 144 ------h~~~--d~~~vL~EmdRVLRPGG~~ii~--d~~~~~~~i~~i~~~l~W~~~~~--~---~~~~e~~l~~~K 205 (221)
|... --..+|.=+.++|||||.||+- +..+ ...+...++..=-++.+. . .++.|..|||+.
T Consensus 102 g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~-~~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv~~g 177 (180)
T d1ej0a_ 102 GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG-FDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177 (180)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT-HHHHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEEE
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc-HHHHHHHHHhhcCEEEEECCCCcccCCceEEEEEec
Confidence 2111 1123334457999999999987 3222 222333333222222222 2 246899999985
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.98 E-value=2e-06 Score=68.25 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=58.5
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc-eeccccccCC---CCC-CccCeeeecc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG-LYHDWCESFN---TYP-RTYDLLHADH 140 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~-~~~d~~e~f~---~yp-~sFDlVh~~~ 140 (221)
..+|||++||+|+++.+.+++|+.+ +.+|.+ ++++.+.+. |+.. +...-+..|. ..+ .+||+|.++=
T Consensus 42 g~~vLDl~~G~G~~~i~a~~~ga~v---v~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP 118 (171)
T d1ws6a1 42 RGRFLDPFAGSGAVGLEAASEGWEA---VLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTCEE---EEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeccccchhhhhhhhccchh---hhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence 5689999999999999999998754 567775 466655433 3432 2211122221 123 7899998863
Q ss_pred ccccccccHHHHHHHh--hhhccCCeEEEEEcC
Q 027609 141 LFSTIKKSLKAVVAEV--DRILRPDGNLILRDD 171 (221)
Q Consensus 141 v~~h~~~d~~~vL~Em--dRVLRPGG~~ii~d~ 171 (221)
=+. .+....+.++ ..+|+|||.+++...
T Consensus 119 PY~---~~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 119 PYA---MDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CTT---SCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred ccc---cCHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 221 1122233333 368999999998643
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.92 E-value=1.9e-06 Score=75.38 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=64.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc----e-eccccccCCC---CCCccCe
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG----L-YHDWCESFNT---YPRTYDL 135 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~----~-~~d~~e~f~~---yp~sFDl 135 (221)
.+.++|||+.||+|+|+.+++..|+. |+.+|.+ .+++.|.+. |+.. . ..|..+-+.. ..+.||+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~GA~---V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAAGAE---VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTCE---EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred cCCCeEEEecCCCcHHHHHHHhCCCe---EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 34779999999999999999998864 5788987 478777654 4422 1 1231110101 1378999
Q ss_pred eeec-cccc--------cccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 136 LHAD-HLFS--------TIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 136 Vh~~-~v~~--------h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
|.++ =.|. ....+....+..+.++|+|||.+++..+
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 9985 1121 1121444566678899999997666543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.75 E-value=0.00018 Score=60.31 Aligned_cols=152 Identities=14% Similarity=0.208 Sum_probs=94.2
Q ss_pred hhhhhhHHHHHhhhhhccc-CCCCCCCeEEeecCcch--HHHHHHhhCCCeEEEeccCCCC----CCHH-HHHHcCccc-
Q 027609 47 ADYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYG--GFAAALKDLKVWVMNVVPIESP----DTLP-IIYERGLFG- 117 (221)
Q Consensus 47 ~d~~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G--~faa~L~~~~v~vmnv~~~d~~----~~l~-~a~eRGl~~- 117 (221)
.....|.+|+-.+.. .+. +......+++|+|+|.| |+--+++..+. +++-+|.. ..|+ ++.+=||-+
T Consensus 47 ~~~~i~~rHi~DSl~-~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~---~v~Lves~~KK~~FL~~v~~~L~L~n~ 122 (239)
T d1xdza_ 47 EKKEVYLKHFYDSIT-AAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENT 122 (239)
T ss_dssp SHHHHHHHTHHHHHG-GGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSE
T ss_pred CHHHHHHHhccchhh-hhhhhcccCCCeEEeecCCCchHHHHHHHhCCCc---cceeecchHHHHHHHHHHHHHhCCCCc
Confidence 344678777766332 233 43345678999999999 55555544333 34445543 2444 455557754
Q ss_pred -eeccccccCCC---CCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhh---HHHHHHHHHhcCCeEE
Q 027609 118 -LYHDWCESFNT---YPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAET---IVEVEDLVKSLHWDVR 190 (221)
Q Consensus 118 -~~~d~~e~f~~---yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~---~~~i~~i~~~l~W~~~ 190 (221)
++|+-.|.+.. +...||+|.|- .|. .+..++.=....|+|||.+++--.... ++..++.++.+.++..
T Consensus 123 ~i~~~R~E~~~~~~~~~~~~D~v~sR-Ava----~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~ 197 (239)
T d1xdza_ 123 TFCHDRAETFGQRKDVRESYDIVTAR-AVA----RLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELE 197 (239)
T ss_dssp EEEESCHHHHTTCTTTTTCEEEEEEE-CCS----CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEE
T ss_pred EEEeehhhhccccccccccceEEEEh-hhh----CHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEE
Confidence 45655565543 34789999986 454 456778888999999999999865554 4445556677777754
Q ss_pred Ee---e---cCCCeeEEEEEecc
Q 027609 191 MI---Y---TNDNQGMLCVHKTY 207 (221)
Q Consensus 191 ~~---~---~~~~e~~l~~~K~~ 207 (221)
.. . .+..-.+++.+|.-
T Consensus 198 ~v~~~~lp~~~~~r~lv~i~K~~ 220 (239)
T d1xdza_ 198 NIHSFKLPIEESDRNIMVIRKIK 220 (239)
T ss_dssp EEEEEECTTTCCEEEEEEEEECS
T ss_pred EEEEEeCCCCCCCEEEEEEEECC
Confidence 22 1 22334677777754
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.72 E-value=9.8e-05 Score=62.80 Aligned_cols=136 Identities=10% Similarity=0.056 Sum_probs=81.7
Q ss_pred CCCCCeEEeecCcchHHHHHHhh----CCCeEEEeccCCCC-CCHHHHHHc----Cccc-e-eccccccCCCCC-CccCe
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKD----LKVWVMNVVPIESP-DTLPIIYER----GLFG-L-YHDWCESFNTYP-RTYDL 135 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~----~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~-~-~~d~~e~f~~yp-~sFDl 135 (221)
.....+|||.+||+|+|..++.+ +...-.++.++|.. .++.+|... +... . .+| .+...+ ..||+
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d---~~~~~~~~~fD~ 191 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQD---GLANLLVDPVDV 191 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESC---TTSCCCCCCEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccc---cccccccccccc
Confidence 44567899999999999988754 33334467888875 466655433 2211 2 223 233345 89999
Q ss_pred eeeccccccccc----------------c-HHHHHHHhhhhccCCeEEEEEcChhh-----HHHHHHHHHhcCCeEEEee
Q 027609 136 LHADHLFSTIKK----------------S-LKAVVAEVDRILRPDGNLILRDDAET-----IVEVEDLVKSLHWDVRMIY 193 (221)
Q Consensus 136 Vh~~~v~~h~~~----------------d-~~~vL~EmdRVLRPGG~~ii~d~~~~-----~~~i~~i~~~l~W~~~~~~ 193 (221)
|.|+-=+..... + ...++.-+.+.|+|||.+++--+..+ ...+.+.+..-++-..+.+
T Consensus 192 vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~ 271 (328)
T d2f8la1 192 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIK 271 (328)
T ss_dssp EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEE
T ss_pred cccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEE
Confidence 999854432110 1 22357778999999998766544332 4566666555454333332
Q ss_pred --------cCCCeeEEEEEec
Q 027609 194 --------TNDNQGMLCVHKT 206 (221)
Q Consensus 194 --------~~~~e~~l~~~K~ 206 (221)
+.-.--+|+.+|+
T Consensus 272 lp~~~F~~~~~~t~ilvl~K~ 292 (328)
T d2f8la1 272 LPETLFKSEQARKSILILEKA 292 (328)
T ss_dssp CCGGGSCC-CCCEEEEEEEEC
T ss_pred CCccccCCCCCCeEEEEEECC
Confidence 1224567888775
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=0.00019 Score=58.81 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=79.8
Q ss_pred hhhhhhHHHHHhhhhhccc-CCCCCCCeEEeecCcch--HHHHHHhhCCCeEEEeccCCCC----CCH-HHHHHcCccc-
Q 027609 47 ADYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYG--GFAAALKDLKVWVMNVVPIESP----DTL-PIIYERGLFG- 117 (221)
Q Consensus 47 ~d~~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G--~faa~L~~~~v~vmnv~~~d~~----~~l-~~a~eRGl~~- 117 (221)
.....|.+|+-.+.. .+. ++ ..+|+|+|+|.| |+--++...+. +++-+|.. ..+ +++.+=||.+
T Consensus 45 ~~~~~~~rHi~DSl~-~~~~~~---~~~ilDiGsGaG~PGi~laI~~p~~---~~~Lves~~KK~~FL~~~~~~L~L~nv 117 (207)
T d1jsxa_ 45 DPNEMLVRHILDSIV-VAPYLQ---GERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENI 117 (207)
T ss_dssp ---CHHHHHHHHHHH-HGGGCC---SSEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSE
T ss_pred CHHHHHHHHhcchHh-hhhhhc---CCceeeeeccCCceeeehhhhcccc---eEEEEecchHHHHHHHHHHHHcCCcce
Confidence 344668777766433 233 32 358999999999 55555544333 34555553 233 3555557754
Q ss_pred -eeccccccCCCCC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeE
Q 027609 118 -LYHDWCESFNTYP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 118 -~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~ 189 (221)
++++-.|.+. + .+||+|.|. .|. ++..++.-..+.|+|||.+++--.....++++.+- -.|+.
T Consensus 118 ~v~~~R~E~~~--~~~~fD~V~sR-A~~----~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~--~~~~~ 182 (207)
T d1jsxa_ 118 EPVQSRVEEFP--SEPPFDGVISR-AFA----SLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP--EEYQV 182 (207)
T ss_dssp EEEECCTTTSC--CCSCEEEEECS-CSS----SHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSC--TTEEE
T ss_pred eeeccchhhhc--cccccceehhh-hhc----CHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhh--cCCEE
Confidence 4555455332 4 789998875 554 45678888889999999999997766666766543 36654
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.0002 Score=59.67 Aligned_cols=119 Identities=9% Similarity=0.025 Sum_probs=77.2
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc---eec-cccccC-CC---CC-Cc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG---LYH-DWCESF-NT---YP-RT 132 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~-d~~e~f-~~---yp-~s 132 (221)
.....+|||+|||+|.++..|+.+ +-| +++++|.+ +++++|.+. ++.. .++ ++...+ .. .. .+
T Consensus 59 ~~~~~~~LDiGtGsg~I~~~l~~~~~~~--~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (250)
T d2h00a1 59 KSTLRRGIDIGTGASCIYPLLGATLNGW--YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEII 136 (250)
T ss_dssp GCCCCEEEEESCTTTTHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred ccccceEEEeCCCchHHHHHHHHhCCCc--cccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCc
Confidence 445789999999999999998876 223 57899986 588877665 3322 222 222221 11 23 68
Q ss_pred cCeeeeccccccccc----------------------------------cHHHHHHHhhhhccCCeEEEEEcC-hhhHHH
Q 027609 133 YDLLHADHLFSTIKK----------------------------------SLKAVVAEVDRILRPDGNLILRDD-AETIVE 177 (221)
Q Consensus 133 FDlVh~~~v~~h~~~----------------------------------d~~~vL~EmdRVLRPGG~~ii~d~-~~~~~~ 177 (221)
||+|.|+==+..-.+ ....++.|-.+.++..|++..--. .+.++.
T Consensus 137 fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~ 216 (250)
T d2h00a1 137 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAP 216 (250)
T ss_dssp BSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHH
T ss_pred eeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHH
Confidence 999998844431100 134456777888999999865433 345778
Q ss_pred HHHHHHhcCCe
Q 027609 178 VEDLVKSLHWD 188 (221)
Q Consensus 178 i~~i~~~l~W~ 188 (221)
+.++++..+..
T Consensus 217 i~~~L~~~g~~ 227 (250)
T d2h00a1 217 LKEELRIQGVP 227 (250)
T ss_dssp HHHHHHHTTCS
T ss_pred HHHHHHHcCCC
Confidence 88888888774
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.58 E-value=1.2e-05 Score=63.82 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=73.0
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHcCccceeccccccCCCCC-CccCeeeeccccccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTI 145 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~ 145 (221)
.....+|||.+||+|+|..++.++-....++.++|..+ .+.++... --...|. +...+ ..||+|.++--+...
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~--~~~~~~~---~~~~~~~~fd~ii~npP~~~~ 91 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWA--EGILADF---LLWEPGEAFDLILGNPPYGIV 91 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTE--EEEESCG---GGCCCSSCEEEEEECCCCCCB
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccc--eeeeeeh---hccccccccceecccCccccc
Confidence 33467999999999999988876521122455666532 22221111 0012232 22223 899999988554321
Q ss_pred cc---------------------------c-HHHHHHHhhhhccCCeEEEEEcChhh-----HHHHHHH-HHhcCCeEEE
Q 027609 146 KK---------------------------S-LKAVVAEVDRILRPDGNLILRDDAET-----IVEVEDL-VKSLHWDVRM 191 (221)
Q Consensus 146 ~~---------------------------d-~~~vL~EmdRVLRPGG~~ii~d~~~~-----~~~i~~i-~~~l~W~~~~ 191 (221)
.. + ...++.-..+.|+|||++++--+..+ ...+++. ++..+..+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~~i~i~~ 171 (223)
T d2ih2a1 92 GEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYY 171 (223)
T ss_dssp SCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEE
T ss_pred cccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcCCEEEEc
Confidence 10 1 23456678899999999877754433 3455444 5554444332
Q ss_pred ee-----cCCCeeEEEEEec
Q 027609 192 IY-----TNDNQGMLCVHKT 206 (221)
Q Consensus 192 ~~-----~~~~e~~l~~~K~ 206 (221)
+. ..-.--+|+.+|+
T Consensus 172 ~~~~F~~~~v~t~i~~~~k~ 191 (223)
T d2ih2a1 172 LGEVFPQKKVSAVVIRFQKS 191 (223)
T ss_dssp EESCSTTCCCCEEEEEEESS
T ss_pred chhcCCCCCCcEEEEEEEeC
Confidence 21 1124456666653
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=5e-05 Score=60.40 Aligned_cols=95 Identities=9% Similarity=0.029 Sum_probs=58.1
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCCCCccCeeeecccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
..+|||++||+|+++-..+++|+. .|+.+|.+ +.++.+.+. +.-. ++ .|..+-+......||+|.++==+
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred hhhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 468999999999999999999986 45677765 355544432 2211 11 23211122223889999987322
Q ss_pred ccccccHHHHHHHh--hhhccCCeEEEEE
Q 027609 143 STIKKSLKAVVAEV--DRILRPDGNLILR 169 (221)
Q Consensus 143 ~h~~~d~~~vL~Em--dRVLRPGG~~ii~ 169 (221)
.. . ....++.-+ ..+|+|+|.+++-
T Consensus 122 ~~-~-~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 122 RR-G-LLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp ST-T-THHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cc-c-hHHHHHHHHHHCCCCCCCeEEEEE
Confidence 21 0 223333333 3589999999984
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.46 E-value=3.9e-05 Score=61.24 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=65.6
Q ss_pred HHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---eec-ccccc
Q 027609 55 VVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LYH-DWCES 125 (221)
Q Consensus 55 ~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~-d~~e~ 125 (221)
+|+++--.+|. ......+|||+.||+|+++-..+++|+. .|+.+|.+ .+++.+.+. +... ++. |..+.
T Consensus 27 ~vrealFn~l~-~~~~~~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~ 103 (182)
T d2fhpa1 27 KVKESIFNMIG-PYFDGGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA 103 (182)
T ss_dssp HHHHHHHHHHC-SCCSSCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHHH-HhcCCCEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh
Confidence 45443333443 1234789999999999999999999975 46777775 466665543 3321 222 21111
Q ss_pred CCCC--C-CccCeeeeccccccccc-cHHHHHHHhh--hhccCCeEEEEE
Q 027609 126 FNTY--P-RTYDLLHADHLFSTIKK-SLKAVVAEVD--RILRPDGNLILR 169 (221)
Q Consensus 126 f~~y--p-~sFDlVh~~~v~~h~~~-d~~~vL~Emd--RVLRPGG~~ii~ 169 (221)
+..+ . ..||+|.++== |.. +....|..+. .+|+|+|++|+-
T Consensus 104 l~~~~~~~~~fDlIflDPP---Y~~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 104 LEQFYEEKLQFDLVLLDPP---YAKQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp HHHHHHTTCCEEEEEECCC---GGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhhhcccCCCcceEEechh---hhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 1111 2 57999987621 111 4455555553 589999999874
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.45 E-value=2.4e-05 Score=66.64 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=79.4
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcC-c---------------ccee-ccccccCCCCC
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERG-L---------------FGLY-HDWCESFNTYP 130 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRG-l---------------~~~~-~d~~e~f~~yp 130 (221)
..+.++||-+|+|.|+.+..+++++..-+.++.+| +++++++.+-- + ..++ .|. ..+..=.
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD-~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da-~~~l~~~ 147 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEID-EDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDG-FEFIKNN 147 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESC-HHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCH-HHHHHHC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCC-HHHHHHHHHhhhhccchhhhhhccCCCCceEEEChH-HHHHhcc
Confidence 45689999999999999999988875433344443 24777775421 0 0111 121 1111013
Q ss_pred CccCeeeeccccccccc----cHHHHHHHhhhhccCCeEEEEEcC-----hhhHHHHHHHHHhcCCeEEEee----c-CC
Q 027609 131 RTYDLLHADHLFSTIKK----SLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMIY----T-ND 196 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d~-----~~~~~~i~~i~~~l~W~~~~~~----~-~~ 196 (221)
++||+|.+. ++..... .-..++..+.|.|+|||.++..-. .+....+.+-+++.=-.+.... + .+
T Consensus 148 ~~yDvIi~D-~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~y~~ 226 (276)
T d1mjfa_ 148 RGFDVIIAD-STDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYAS 226 (276)
T ss_dssp CCEEEEEEE-CCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSS
T ss_pred CCCCEEEEe-CCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhCCeeEEEEecCcCCCC
Confidence 789999976 3432221 115789999999999999998532 2223333333444433443322 1 23
Q ss_pred CeeEEEEEecc
Q 027609 197 NQGMLCVHKTY 207 (221)
Q Consensus 197 ~e~~l~~~K~~ 207 (221)
...+++|.|..
T Consensus 227 ~w~f~~as~~~ 237 (276)
T d1mjfa_ 227 PWAFLVGVKGD 237 (276)
T ss_dssp SEEEEEEEESS
T ss_pred ceEEEEEeCCC
Confidence 46788888754
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.44 E-value=0.00012 Score=63.75 Aligned_cols=136 Identities=16% Similarity=0.122 Sum_probs=80.3
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCC-CCHHHHHHcCccc-----------e-eccccccCCCCCCcc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP-DTLPIIYERGLFG-----------L-YHDWCESFNTYPRTY 133 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~-~~l~~a~eRGl~~-----------~-~~d~~e~f~~yp~sF 133 (221)
..+.++||-+|-|.|+.++++++.+ +. +++.++.. +.++++.+- ++. + +.|.-+-+..-++.|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~--~v~~VEID~~Vv~~a~~~-~~~~~~~~~dprv~i~i~Da~~~l~~~~~~y 180 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVE--KVTMCEIDEMVIDVAKKF-LPGMSCGFSHPKLDLFCGDGFEFLKNHKNEF 180 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCC--EEEEECSCHHHHHHHHHH-CTTTSGGGGCTTEEEECSCHHHHHHHCTTCE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcc--eEEEEcccHHHHHHHHhh-chhhccccCCCCeEEEEchHHHHHHhCCCCC
Confidence 4568999999999999999999874 43 44555553 477777664 211 1 122111111135889
Q ss_pred Ceeeeccccccccc---cHHHHHHHhhhhccCCeEEEEEcCh-----hhHHHHHHHHHhcCCeEEEeec------CCCee
Q 027609 134 DLLHADHLFSTIKK---SLKAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMIYT------NDNQG 199 (221)
Q Consensus 134 DlVh~~~v~~h~~~---d~~~vL~EmdRVLRPGG~~ii~d~~-----~~~~~i~~i~~~l~W~~~~~~~------~~~e~ 199 (221)
|+|.+...-..-.. --..++..+.|+|+|||.++..-.. +....+.+.+++.=..+..+.. .+.-.
T Consensus 181 DvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~ 260 (312)
T d2b2ca1 181 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMG 260 (312)
T ss_dssp EEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEE
T ss_pred CEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccce
Confidence 99998632211110 2356788999999999999997432 2344455555555445443321 23446
Q ss_pred EEEEEec
Q 027609 200 MLCVHKT 206 (221)
Q Consensus 200 ~l~~~K~ 206 (221)
+++|.|.
T Consensus 261 f~~aSk~ 267 (312)
T d2b2ca1 261 YLICAKN 267 (312)
T ss_dssp EEEEESS
T ss_pred eeEEECC
Confidence 8888875
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.26 E-value=0.00016 Score=61.98 Aligned_cols=146 Identities=13% Similarity=0.147 Sum_probs=84.8
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcC------c----cc-eeccc
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERG------L----FG-LYHDW 122 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRG------l----~~-~~~d~ 122 (221)
.|.++|. +...+.++||=+|-|.|+.+.++++. ++..+.++.+|. +.++++.+-- + .. .+.|.
T Consensus 65 ~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~-~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da 143 (290)
T d1xj5a_ 65 AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDK-MVVDVSKQFFPDVAIGYEDPRVNLVIGDG 143 (290)
T ss_dssp HHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCH-HHHHHHHHHCHHHHGGGGSTTEEEEESCH
T ss_pred HHHHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCH-HHHHHHHHhchhhhccccCCCcEEEEccH
Confidence 3665553 33456899999999999999999887 444334444442 3666665531 1 00 22342
Q ss_pred cccCCCCC-CccCeeeeccccccccc----cHHHHHHHhhhhccCCeEEEEEcCh-----hhHHHHHHHHHhcCCeEEEe
Q 027609 123 CESFNTYP-RTYDLLHADHLFSTIKK----SLKAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 123 ~e~f~~yp-~sFDlVh~~~v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d~~-----~~~~~i~~i~~~l~W~~~~~ 192 (221)
.+-+...+ ++||+|... ++..... --..++..+.|+|+|||.++.--.. +....+.+-+++.=..+..+
T Consensus 144 ~~~l~~~~~~~yDvIi~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y 222 (290)
T d1xj5a_ 144 VAFLKNAAEGSYDAVIVD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNY 222 (290)
T ss_dssp HHHHHTSCTTCEEEEEEC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHhhccccCccEEEEc-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccceeE
Confidence 22222345 799999975 3321110 1267899999999999999997432 22333434344444443322
Q ss_pred e-------cCCCeeEEEEEec
Q 027609 193 Y-------TNDNQGMLCVHKT 206 (221)
Q Consensus 193 ~-------~~~~e~~l~~~K~ 206 (221)
. ..+.=.+++|.|.
T Consensus 223 ~~~~vPty~~g~w~f~~as~~ 243 (290)
T d1xj5a_ 223 AWTSVPTYPSGVIGFMLCSTE 243 (290)
T ss_dssp EEEECTTSGGGEEEEEEEECS
T ss_pred eeEeeeeecCCceEEEEEeCC
Confidence 1 1223357777765
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.25 E-value=0.0002 Score=59.31 Aligned_cols=128 Identities=12% Similarity=0.100 Sum_probs=74.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhC---CCeEEEeccCCCC-CCHHH----HHHcCccc---ee-ccccccCCC------CC
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESP-DTLPI----IYERGLFG---LY-HDWCESFNT------YP 130 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~---~v~vmnv~~~d~~-~~l~~----a~eRGl~~---~~-~d~~e~f~~------yp 130 (221)
.+.++||.+|+++|--+..|++. +.. ++.++.. +..+. ..+-|+.. +. .+..+.++. .+
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~---v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~ 134 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGK---ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH 134 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCE---EEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGT
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcE---EEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccC
Confidence 35889999999999877777642 333 3555543 23333 33345532 11 222222222 24
Q ss_pred CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh--------------hh----HHHHH----HHHHhcCCe
Q 027609 131 RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA--------------ET----IVEVE----DLVKSLHWD 188 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~--------------~~----~~~i~----~i~~~l~W~ 188 (221)
++||+|.... .+.+-...+....+.|||||.+|+.+.. .. .+.+. .+...=+|+
T Consensus 135 ~~fD~iFiDa----~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~ 210 (227)
T d1susa1 135 GSYDFIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIE 210 (227)
T ss_dssp TCBSEEEECS----CSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBC
T ss_pred CceeEEEecc----chhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 6899998764 2234456777778999999999998541 11 11232 233445677
Q ss_pred EEEeecCCCeeEEEEEe
Q 027609 189 VRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 189 ~~~~~~~~~e~~l~~~K 205 (221)
+.+..- ++++++|+|
T Consensus 211 ~~llPi--gDGl~i~~K 225 (227)
T d1susa1 211 ICMLPV--GDGITICRR 225 (227)
T ss_dssp CEEECS--TTCEEEECB
T ss_pred EEEeec--CCeeEEEEE
Confidence 665433 456999988
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.00016 Score=61.96 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=67.3
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcC------c----cce-eccc
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERG------L----FGL-YHDW 122 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRG------l----~~~-~~d~ 122 (221)
.|.++|. .....-++||-+|-|.|+.+..+.+. ++..+.++.+|. ++++++.+.- + ..+ ..|.
T Consensus 63 ~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~-~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da 141 (285)
T d2o07a1 63 SYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDE-DVIQVSKKFLPGMAIGYSSSKLTLHVGDG 141 (285)
T ss_dssp HHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH-HHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred HHHHHhccHhhhhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCH-HHHHHHHhhchhhccccCCCCceEEEccH
Confidence 3555553 23446799999999999999999987 454333444442 4677665541 1 011 2232
Q ss_pred cccCCCCCCccCeeeeccccccccc----cHHHHHHHhhhhccCCeEEEEEc
Q 027609 123 CESFNTYPRTYDLLHADHLFSTIKK----SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 123 ~e~f~~yp~sFDlVh~~~v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
-+-+..-+++||+|.+. ++..... --..++..+.|.|+|||.+++.-
T Consensus 142 ~~~l~~~~~~yDvIi~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 142 FEFMKQNQDAFDVIITD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp HHHHHTCSSCEEEEEEE-CC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHhcCCCCCCEEEEc-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 22121235899999987 3432110 12467899999999999999974
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.18 E-value=0.00015 Score=62.41 Aligned_cols=147 Identities=9% Similarity=0.027 Sum_probs=84.8
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCCCCHHHHHHcC------c----cce-eccc
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESPDTLPIIYERG------L----FGL-YHDW 122 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~~~l~~a~eRG------l----~~~-~~d~ 122 (221)
.|.++|. +...+.++||=+|.|.|+.+..+++++ +..+.++.+|. .+++++.+.- + ..+ ..|.
T Consensus 74 ~YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp-~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da 152 (295)
T d1inla_ 74 MYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDG-LVIEAARKYLKQTSCGFDDPRAEIVIANG 152 (295)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCH-HHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred hhhhhhcchhHhhCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCH-HHHHHHHHHHHhhcccccCCCcEEEhhhH
Confidence 3555543 224458999999999999999998874 44333444442 3666665541 1 011 2232
Q ss_pred cccCCCCCCccCeeeecccccccc--c---cHHHHHHHhhhhccCCeEEEEEcChh-----hHHHHHHHHHhcCCeEEEe
Q 027609 123 CESFNTYPRTYDLLHADHLFSTIK--K---SLKAVVAEVDRILRPDGNLILRDDAE-----TIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 123 ~e~f~~yp~sFDlVh~~~v~~h~~--~---d~~~vL~EmdRVLRPGG~~ii~d~~~-----~~~~i~~i~~~l~W~~~~~ 192 (221)
-+-+...++.||+|.+.. +.... . --..++..+.|.|+|||.++..-..+ ....+-+.+++.=-.+...
T Consensus 153 ~~~l~~~~~~yDvIi~D~-~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y 231 (295)
T d1inla_ 153 AEYVRKFKNEFDVIIIDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVY 231 (295)
T ss_dssp HHHGGGCSSCEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHhcCCCCCCEEEEcC-CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEE
Confidence 221222458999999863 32211 0 12688999999999999999975432 2333333344443333322
Q ss_pred e------cCCCeeEEEEEecc
Q 027609 193 Y------TNDNQGMLCVHKTY 207 (221)
Q Consensus 193 ~------~~~~e~~l~~~K~~ 207 (221)
. ..+.=.+++|.|..
T Consensus 232 ~~~vPtyp~G~w~f~~aSk~~ 252 (295)
T d1inla_ 232 LGFMTTYPSGMWSYTFASKGI 252 (295)
T ss_dssp EEECTTSTTSEEEEEEEESSC
T ss_pred EeeeceecCcccEEEEEeCCC
Confidence 1 12333788998865
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.16 E-value=0.00043 Score=58.83 Aligned_cols=109 Identities=20% Similarity=0.129 Sum_probs=60.0
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEecc----CCCCC--CHHHHHHcCccceeccccccCCCC-CCccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVP----IESPD--TLPIIYERGLFGLYHDWCESFNTY-PRTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~----~d~~~--~l~~a~eRGl~~~~~d~~e~f~~y-p~sFDlVh~~~v~~ 143 (221)
..+|+|+|||+|+++..++++. .++.+.+ .|.+. +....+..+++..-. ...+-.. +...|+|.|+..-+
T Consensus 67 ~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~--~~dv~~l~~~~~D~vlcDm~es 143 (257)
T d2p41a1 67 EGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQS--GVDVFFIPPERCDTLLCDIGES 143 (257)
T ss_dssp CEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEEC--SCCTTTSCCCCCSEEEECCCCC
T ss_pred CCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccchh--hhhHHhcCCCcCCEEEeeCCCC
Confidence 4479999999999999999874 2334433 33321 111111112221110 0112122 48899999995432
Q ss_pred cccc------cHHHHHHHhhhhccCCeEEEEEcC----hhhHHHHHHHHH
Q 027609 144 TIKK------SLKAVVAEVDRILRPDGNLILRDD----AETIVEVEDLVK 183 (221)
Q Consensus 144 h~~~------d~~~vL~EmdRVLRPGG~~ii~d~----~~~~~~i~~i~~ 183 (221)
-.. -...+|.=+.+.|+|||.|++--- .++++.++.+-+
T Consensus 144 -s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~ 192 (257)
T d2p41a1 144 -SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQR 192 (257)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred -CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHH
Confidence 110 122444455688999999999833 345555555433
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.10 E-value=0.00078 Score=57.01 Aligned_cols=138 Identities=16% Similarity=0.141 Sum_probs=82.3
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcC-----c-----cc-eeccccccCCCCCCccCe
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERG-----L-----FG-LYHDWCESFNTYPRTYDL 135 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRG-----l-----~~-~~~d~~e~f~~yp~sFDl 135 (221)
....++||-+|-|.|+.++.++++ ++..+.++.+|. +.++++.+-- . .. ...|.-+-+...++.||+
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~-~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDv 151 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDG-KVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV 151 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCH-HHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCH-HHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCE
Confidence 345789999999999999999987 454434455543 3666665541 1 01 122321112223588999
Q ss_pred eeeccccccccc----cHHHHHHHhhhhccCCeEEEEEcChh-----hHHHHHHHHHhcCCeEEEee------cCCCeeE
Q 027609 136 LHADHLFSTIKK----SLKAVVAEVDRILRPDGNLILRDDAE-----TIVEVEDLVKSLHWDVRMIY------TNDNQGM 200 (221)
Q Consensus 136 Vh~~~v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d~~~-----~~~~i~~i~~~l~W~~~~~~------~~~~e~~ 200 (221)
|.... +..... --..++..+.|.|+|||.++..-..+ ....+.+.+++.=-.+.... ..+.-.+
T Consensus 152 Ii~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f 230 (274)
T d1iy9a_ 152 IMVDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTF 230 (274)
T ss_dssp EEESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEE
T ss_pred EEEcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEE
Confidence 98763 221110 13578899999999999999864322 23444444554434443332 1234578
Q ss_pred EEEEecc
Q 027609 201 LCVHKTY 207 (221)
Q Consensus 201 l~~~K~~ 207 (221)
++|.|.+
T Consensus 231 ~~aS~~~ 237 (274)
T d1iy9a_ 231 TIGSKKY 237 (274)
T ss_dssp EEEESSC
T ss_pred EEEcCCC
Confidence 8888764
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.73 E-value=0.00076 Score=53.93 Aligned_cols=120 Identities=14% Similarity=0.119 Sum_probs=79.2
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc--cceeccccccCC----CCC-CccCeeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL--FGLYHDWCESFN----TYP-RTYDLLHA 138 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl--~~~~~d~~e~f~----~yp-~sFDlVh~ 138 (221)
.......++|..||.||.+.+|++++. .|.++|.. ++++.+.++-. ...+|.....+. .+. ..+|.|..
T Consensus 15 ~~~~g~~~vD~T~G~GGhs~~iL~~~~---~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~ 91 (182)
T d1wg8a2 15 AVRPGGVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILA 91 (182)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHhcccC---cEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEE
Confidence 344577899999999999999999864 46888874 57877776522 224443222221 244 67888887
Q ss_pred cccccccc--c------cHHHHHHHhhhhccCCeEEEEEcChhhHH-HHHHHHHhcCCeE
Q 027609 139 DHLFSTIK--K------SLKAVVAEVDRILRPDGNLILRDDAETIV-EVEDLVKSLHWDV 189 (221)
Q Consensus 139 ~~v~~h~~--~------d~~~vL~EmdRVLRPGG~~ii~d~~~~~~-~i~~i~~~l~W~~ 189 (221)
..=++..+ + .....|.-...+|+|||.+++-.-+..-+ .++.+++.-.++.
T Consensus 92 DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k~ 151 (182)
T d1wg8a2 92 DLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLKV 151 (182)
T ss_dssp ECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSEE
T ss_pred EccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhcccee
Confidence 64333221 1 34446666689999999999887766543 3566677655554
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.51 E-value=0.002 Score=50.65 Aligned_cols=95 Identities=11% Similarity=0.091 Sum_probs=56.1
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee--ccccccCCC-CC-CccCeeee
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY--HDWCESFNT-YP-RTYDLLHA 138 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~--~d~~e~f~~-yp-~sFDlVh~ 138 (221)
..+|||+-||+|+++-+.++||+. .++-+|.+ +.++.+.+. |+.. .+ .|..+.+.. .. ..||+|.+
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred cceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 458999999999999999999986 46667765 355444433 2211 11 121111111 23 56999988
Q ss_pred ccccccccccHHHHHHHh--hhhccCCeEEEEE
Q 027609 139 DHLFSTIKKSLKAVVAEV--DRILRPDGNLILR 169 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~Em--dRVLRPGG~~ii~ 169 (221)
+==+.. . ....+|.=+ ..+|+|+|++++-
T Consensus 122 DPPY~~-~-~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 122 DPPFHF-N-LAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CCCSSS-C-HHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred chhHhh-h-hHHHHHHHHHHhCCcCCCcEEEEE
Confidence 622211 0 122222222 3689999999984
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.0066 Score=51.04 Aligned_cols=123 Identities=11% Similarity=0.170 Sum_probs=70.2
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC--C---CHHHHHHcCccceeccccccC-CC--CCCccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP--D---TLPIIYERGLFGLYHDWCESF-NT--YPRTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~--~---~l~~a~eRGl~~~~~d~~e~f-~~--yp~sFDlVh 137 (221)
+......+||||-||+||=+.+|++..-. ..|+..|.+ . +.+.+..-|+....-...... .. .+..||.|.
T Consensus 98 L~~~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL 176 (284)
T d1sqga2 98 LAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRIL 176 (284)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEE
T ss_pred cCccccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEE
Confidence 45666889999999999987777654211 135555553 2 223444445533221100111 11 347899997
Q ss_pred ecc------cccc-------ccc--------cHHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHh-cCCeE
Q 027609 138 ADH------LFST-------IKK--------SLKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKS-LHWDV 189 (221)
Q Consensus 138 ~~~------v~~h-------~~~--------d~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~-l~W~~ 189 (221)
+.- .+.. +.. --..+|...-+.|||||++|.+++. +.-+-|+.++++ -.++.
T Consensus 177 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~ 254 (284)
T d1sqga2 177 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAEL 254 (284)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEE
T ss_pred EeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCcEE
Confidence 542 2211 110 2346677788899999999999763 334556666654 34543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.078 Score=44.56 Aligned_cols=138 Identities=16% Similarity=0.192 Sum_probs=78.5
Q ss_pred hhhhccc-CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHH----HcCccce--ec-cccccCCCC
Q 027609 59 SYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIY----ERGLFGL--YH-DWCESFNTY 129 (221)
Q Consensus 59 ~Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~----eRGl~~~--~~-d~~e~f~~y 129 (221)
.|...+. ++.....+|||+-||.|+|+..|+++... |++++.+ ..++.|. ..|+.+. ++ +..+.+...
T Consensus 200 l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~---V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~ 276 (358)
T d1uwva2 200 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAAS---VVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 276 (358)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSE---EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS
T ss_pred HHHHHHHhhccCCCceEEEecccccccchhccccccE---EEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhh
Confidence 4454444 45556789999999999999999987544 4666654 3444443 3355332 22 222222222
Q ss_pred ---CCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEEE---ee----cCCCe
Q 027609 130 ---PRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRM---IY----TNDNQ 198 (221)
Q Consensus 130 ---p~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~~---~~----~~~~e 198 (221)
...||+|..+==-. -...++.++-+ ++|.-.+++|=... ....++.+. +-.|+... .| +..=|
T Consensus 277 ~~~~~~~d~vilDPPR~----G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l~-~~gy~l~~i~~~D~FP~T~HvE 350 (358)
T d1uwva2 277 PWAKNGFDKVLLDPARA----GAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALL-KAGYTIARLAMLDMFPHTGHLE 350 (358)
T ss_dssp GGGTTCCSEEEECCCTT----CCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHH-HTTCEEEEEEEECCSTTSSCCE
T ss_pred hhhhccCceEEeCCCCc----cHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHH-HCCCeEeEEEEEecCCCCccEE
Confidence 27789887651111 11245666655 48988999984443 345555544 44677642 23 34456
Q ss_pred eEEEEEe
Q 027609 199 GMLCVHK 205 (221)
Q Consensus 199 ~~l~~~K 205 (221)
-|.+.+|
T Consensus 351 ~v~~l~R 357 (358)
T d1uwva2 351 SMVLFSR 357 (358)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 6655443
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.65 E-value=0.0055 Score=48.59 Aligned_cols=61 Identities=13% Similarity=0.019 Sum_probs=43.9
Q ss_pred cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEE--e-e------------cCCCeeEEEEEeccc
Q 027609 148 SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM--I-Y------------TNDNQGMLCVHKTYW 208 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~--~-~------------~~~~e~~l~~~K~~w 208 (221)
....++.|+.|||+|||.+++-........+...+....|...- . . ....|-+++++|.-.
T Consensus 52 ~~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~iiW~k~~~~~~~~~~~~~~~e~i~~~~k~~~ 127 (256)
T d1g60a_ 52 FTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMGSAKRRFSTGQETILFFSKSKN 127 (256)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHTTCEEEEEEEECCCCSCCCCSSSCBCCCEEEEEEESSTT
T ss_pred HHHHHHHHhhhccccCcccccccCchhhhhhhhhhhcccceeeeeeEeeecccccccccccccceeeeeccccCcc
Confidence 45678999999999999998777666677777777777777531 1 0 113578888888654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.47 E-value=0.017 Score=49.13 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=68.3
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhh---CCCeEEEeccCCCC-C---CHH-HHHHcCcccee--ccccccCCCCCCccCe
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKD---LKVWVMNVVPIESP-D---TLP-IIYERGLFGLY--HDWCESFNTYPRTYDL 135 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~---~~v~vmnv~~~d~~-~---~l~-~a~eRGl~~~~--~d~~e~f~~yp~sFDl 135 (221)
++.....+||||-||+|+=+.+|++ ... .++..|.+ . .++ ....-|+.++. ++-...+..++..||.
T Consensus 112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~---~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ 188 (313)
T d1ixka_ 112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDG---VIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 188 (313)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCS---EEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred ccCCccceeeecccchhhhhHhhhhhccccc---ceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccE
Confidence 3455678999999999995555543 232 24556653 1 222 33333554433 3222223334588999
Q ss_pred eeec----cc--ccc-----cc----------ccHHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHhcCCe
Q 027609 136 LHAD----HL--FST-----IK----------KSLKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKSLHWD 188 (221)
Q Consensus 136 Vh~~----~v--~~h-----~~----------~d~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~l~W~ 188 (221)
|.+. .. +.. |. .--..+|...-+.|||||++|.+++. +.-+-|+.+++.-.++
T Consensus 189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~ 266 (313)
T d1ixka_ 189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 266 (313)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCE
Confidence 8753 11 111 10 02345677888899999999999763 3345566666655443
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=94.83 E-value=0.029 Score=46.01 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=55.4
Q ss_pred hhhcccCCCCCCCeEEeecCcchHHHHHHh----hCCCeEEEeccCCCC-CCHHH-HHHcCcccee-cccc--ccCCCCC
Q 027609 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALK----DLKVWVMNVVPIESP-DTLPI-IYERGLFGLY-HDWC--ESFNTYP 130 (221)
Q Consensus 60 Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~----~~~v~vmnv~~~d~~-~~l~~-a~eRGl~~~~-~d~~--e~f~~yp 130 (221)
|.++|. ..+-.+||.+|++.|+-+..++ ..+.. ..+.++|.. +.... ..+.--+.++ .|-. +.+..+.
T Consensus 72 ~~eli~--~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~-~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~ 148 (232)
T d2bm8a1 72 YHDMLW--ELRPRTIVELGVYNGGSLAWFRDLTKIMGID-CQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLR 148 (232)
T ss_dssp HHHHHH--HHCCSEEEEECCTTSHHHHHHHHHHHHTTCC-CEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGS
T ss_pred HHHHHH--HhCCCEEEEECCCCchHHHHHHHHHHhcCCC-ceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHH
Confidence 555554 2335689999999997444332 22211 134444431 11110 0111112222 2211 1122233
Q ss_pred -CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhh
Q 027609 131 -RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAET 174 (221)
Q Consensus 131 -~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~ 174 (221)
..||+|+-... |+.. .+..-.+....|+|||++|+-|..+.
T Consensus 149 ~~~~dlIfID~~-H~~~--~v~~~~~~~~lLk~GG~iIveD~i~~ 190 (232)
T d2bm8a1 149 EMAHPLIFIDNA-HANT--FNIMKWAVDHLLEEGDYFIIEDMIPY 190 (232)
T ss_dssp SSCSSEEEEESS-CSSH--HHHHHHHHHHTCCTTCEEEECSCHHH
T ss_pred hcCCCEEEEcCC-cchH--HHHHHHHHhcccCcCCEEEEEcCCcc
Confidence 67899887643 3332 22222356789999999999998654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=94.55 E-value=0.0045 Score=51.39 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=43.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----ccceeccccccCCCCC-CccCeeeeccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LFGLYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~~~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
.....+||++|||+|.++..|++++.. ++.++.. ++++.+.++- -+.+++.-...+ .++ ..++.|.++.=
T Consensus 27 ~~~~d~VLEIGpG~G~LT~~L~~~~~~---v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~-~~~~~~~~~vv~NLP 102 (245)
T d1yuba_ 27 LKETDTVYEIGTGKGHLTTKLAKISKQ---VTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQF-QFPNKQRYKIVGNIP 102 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHSSE---EEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTT-TCCCSSEEEEEEECC
T ss_pred CCCCCeEEEECCCccHHHHHHHhhcCc---eeEeeecccchhhhhhhhhhccchhhhhhhhhcc-ccccceeeeEeeeee
Confidence 345788999999999999999998754 4556553 4566555552 122344212222 245 66666777644
Q ss_pred c
Q 027609 142 F 142 (221)
Q Consensus 142 ~ 142 (221)
+
T Consensus 103 Y 103 (245)
T d1yuba_ 103 Y 103 (245)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=94.40 E-value=0.011 Score=48.45 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=34.0
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
+.....+||++|||+|.++..|++++.. ++.++.. ++.+...++
T Consensus 18 ~~~~~d~VlEIGpG~G~LT~~Ll~~~~~---v~avE~D~~l~~~l~~~ 62 (235)
T d1qama_ 18 RLNEHDNIFEIGSGKGHFTLELVQRCNF---VTAIEIDHKLCKTTENK 62 (235)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHSSE---EEEECSCHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCchHHHHHHHhCcCc---eEEEeeccchHHHHHHH
Confidence 3446889999999999999999998654 4556654 477777776
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.03 E-value=0.013 Score=46.35 Aligned_cols=100 Identities=14% Similarity=-0.066 Sum_probs=59.1
Q ss_pred CCCCCCCeEEeecCcchH-HHHHHhh-CCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCC------CCCCccCee
Q 027609 66 INWSFVRNVMDMRAVYGG-FAAALKD-LKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFN------TYPRTYDLL 136 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~-faa~L~~-~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~------~yp~sFDlV 136 (221)
++. ..+||.+|||..+ +++.+++ .++. .|+.+|.+ +.++.+.+.|..-++..-.+++. +-...+|++
T Consensus 23 v~~--G~tVlV~GaG~vGl~a~~~ak~~ga~--~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~v 98 (195)
T d1kola2 23 VGP--GSTVYVAGAGPVGLAAAASARLLGAA--VVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCA 98 (195)
T ss_dssp CCT--TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred CCC--CCEEEEECcCHHHHHHHHHHHhhccc--ceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEE
Confidence 444 6799999999965 4455543 4553 24555654 47899999886433321111110 112456776
Q ss_pred eeccc------ccccc--ccHHHHHHHhhhhccCCeEEEEE
Q 027609 137 HADHL------FSTIK--KSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 137 h~~~v------~~h~~--~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.-.-- .++.. ......|.++-+++||||.+++-
T Consensus 99 id~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 99 VDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp EECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred EECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 52211 11111 13457899999999999999877
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=93.03 E-value=0.12 Score=44.80 Aligned_cols=138 Identities=13% Similarity=0.083 Sum_probs=75.7
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhC----CCe--------EEEeccCCCC-CCHHHHHH----cCcc----ceecccccc
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDL----KVW--------VMNVVPIESP-DTLPIIYE----RGLF----GLYHDWCES 125 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~----~v~--------vmnv~~~d~~-~~l~~a~e----RGl~----~~~~d~~e~ 125 (221)
.+....+|+|-.||+|+|..+..++ +.. -.++.+++.. .+..++.- +|+. ...+ ...
T Consensus 159 ~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~--~d~ 236 (425)
T d2okca1 159 NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVC--EDS 236 (425)
T ss_dssp CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEE--CCT
T ss_pred cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeec--Cch
Confidence 4556789999999999998776553 100 0123445543 24443332 2321 1222 112
Q ss_pred CCCCC-CccCeeeecccccccc----------------ccHHHHHHHhhhhccCCeEEEEEcChhh------HHHHHHHH
Q 027609 126 FNTYP-RTYDLLHADHLFSTIK----------------KSLKAVVAEVDRILRPDGNLILRDDAET------IVEVEDLV 182 (221)
Q Consensus 126 f~~yp-~sFDlVh~~~v~~h~~----------------~d~~~vL~EmdRVLRPGG~~ii~d~~~~------~~~i~~i~ 182 (221)
+...+ ..||+|.++==|.... ..-..++.-+...|+|||.+++--+..+ -..+.+.+
T Consensus 237 l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~L 316 (425)
T d2okca1 237 LEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRL 316 (425)
T ss_dssp TTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHH
T ss_pred hhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHH
Confidence 33345 8899999885442110 0123588889999999998877755433 23454444
Q ss_pred HhcCCeEEEee--------cCCCeeEEEEEec
Q 027609 183 KSLHWDVRMIY--------TNDNQGMLCVHKT 206 (221)
Q Consensus 183 ~~l~W~~~~~~--------~~~~e~~l~~~K~ 206 (221)
-.-++-..+.. +.-+--||+.+|.
T Consensus 317 l~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~ 348 (425)
T d2okca1 317 LQDFNLHTILRLPTGIFYAQGVKANVLFFSKG 348 (425)
T ss_dssp HHHEEEEEEEECCSSSSSSTTCCEEEEEEEES
T ss_pred HHhcchhHhhcCCcccccCCCCCeEEEEEECC
Confidence 43343222222 1124567777774
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.14 Score=42.74 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=60.3
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhC---CCeEEEeccCCCC-C---C-HHHHHHcCccc--eec-cccccCCCC-C--C
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESP-D---T-LPIIYERGLFG--LYH-DWCESFNTY-P--R 131 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~---~v~vmnv~~~d~~-~---~-l~~a~eRGl~~--~~~-d~~e~f~~y-p--~ 131 (221)
+......+||||.||+|+=+.+|++. .. .++..|.+ + . .+.+..-|+.. +.+ |. ..+.+. + .
T Consensus 90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~---~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~-~~~~~~~~~~~ 165 (293)
T d2b9ea1 90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQG---KIFAFDLDAKRLASMATLLARAGVSCCELAEEDF-LAVSPSDPRYH 165 (293)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG-GGSCTTCGGGT
T ss_pred cCCCccceEEecccchhhHHHHHHHHhcCCc---eEeeecCCHHHHHHHHHHHHhcCccceeeeehhh-hhhcccccccc
Confidence 45566888999999999977766543 22 24556653 2 2 22333335433 222 32 223322 3 6
Q ss_pred ccCeeeeccc------ccc-----ccc-----------cHH-HHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHh
Q 027609 132 TYDLLHADHL------FST-----IKK-----------SLK-AVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKS 184 (221)
Q Consensus 132 sFDlVh~~~v------~~h-----~~~-----------d~~-~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~ 184 (221)
.||.|.+.-= +.. +.. ..+ .+|...- .|+|||++|.+++. +.-+-|+.+++.
T Consensus 166 ~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L~~ 244 (293)
T d2b9ea1 166 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQQ 244 (293)
T ss_dssp TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHHTT
T ss_pred eeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHHHh
Confidence 7999875411 111 000 111 1222233 47999999999763 334556666654
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=91.88 E-value=0.079 Score=46.17 Aligned_cols=41 Identities=15% Similarity=0.338 Sum_probs=28.9
Q ss_pred CC-CccCeeeeccccccccc--------------------------------cHHHHHHHhhhhccCCeEEEEE
Q 027609 129 YP-RTYDLLHADHLFSTIKK--------------------------------SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 129 yp-~sFDlVh~~~v~~h~~~--------------------------------d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
|| +|.|++||+.++|-+.+ |...+|.==.+=|+|||.+++.
T Consensus 135 fP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~ 208 (359)
T d1m6ex_ 135 FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred CCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 78 99999999988873321 3333444444557899999997
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.35 E-value=0.03 Score=44.70 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=41.7
Q ss_pred cccccCCCCC-CccCeeeeccc----cc------cccccHHHHHHHhhhhccCCeEEEEEcCh---------hhHHHHHH
Q 027609 121 DWCESFNTYP-RTYDLLHADHL----FS------TIKKSLKAVVAEVDRILRPDGNLILRDDA---------ETIVEVED 180 (221)
Q Consensus 121 d~~e~f~~yp-~sFDlVh~~~v----~~------h~~~d~~~vL~EmdRVLRPGG~~ii~d~~---------~~~~~i~~ 180 (221)
|--|.+...| +|+|||.++== +. .|.+.....+.|+.|||||||.+++.-.. .....+..
T Consensus 11 D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (279)
T d1eg2a_ 11 DCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISH 90 (279)
T ss_dssp CHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHHHHHH
T ss_pred hHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhhHHHH
Confidence 4333344566 88888876621 11 12224678899999999999999985221 22344455
Q ss_pred HHHhcCCeE
Q 027609 181 LVKSLHWDV 189 (221)
Q Consensus 181 i~~~l~W~~ 189 (221)
+.....|..
T Consensus 91 ~~~~~~~~~ 99 (279)
T d1eg2a_ 91 MRQNSKMLL 99 (279)
T ss_dssp HHHHCCCEE
T ss_pred HHhccCcee
Confidence 555555554
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.12 E-value=0.051 Score=47.47 Aligned_cols=94 Identities=13% Similarity=0.022 Sum_probs=61.3
Q ss_pred CCeEEeecCcchHHHHH-HhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc-----------------ee-ccccccC
Q 027609 71 VRNVMDMRAVYGGFAAA-LKDLKVWVMNVVPIESP-DTLPIIYER----GLFG-----------------LY-HDWCESF 126 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~-L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~-----------------~~-~d~~e~f 126 (221)
..+|||+.||+|.++.. ..+-++. .|+..|.+ +.++.+.+. |+.. .. .|...-+
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~--~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAE--EVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCS--EEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCC--EEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 56799999999999985 4545653 46677775 477766654 1110 01 1111100
Q ss_pred CCCCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 127 NTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 127 ~~yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
..-...||+|...- +- .|..+|.-.-|-+|.||.+.++-+
T Consensus 124 ~~~~~~fDvIDiDP----fG-s~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 124 AERHRYFHFIDLDP----FG-SPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HHSTTCEEEEEECC----SS-CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HhhcCcCCcccCCC----CC-CcHHHHHHHHHHhccCCEEEEEec
Confidence 00125699998763 33 678899999999999999999943
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.88 E-value=0.048 Score=41.29 Aligned_cols=93 Identities=11% Similarity=0.024 Sum_probs=53.6
Q ss_pred CCCeEEeecCcc-hHHHHHHhh-CCCeEEEeccCCCC-CCHHHHHHcCccceeccc--cccCCCCCCccCeeeecccccc
Q 027609 70 FVRNVMDMRAVY-GGFAAALKD-LKVWVMNVVPIESP-DTLPIIYERGLFGLYHDW--CESFNTYPRTYDLLHADHLFST 144 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~-~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~--~e~f~~yp~sFDlVh~~~v~~h 144 (221)
...+||-+|||. |.++..+++ .|+.+ +.++.+ +.++.+++-|...++..- .+......+.||.+... +-.
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~v---i~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~-~~~- 101 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAET---YVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC-ASS- 101 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEE---EEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC-CSC-
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccc---cccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE-ecC-
Confidence 367899999994 445555544 36654 344543 578888888754333211 11111234788976542 111
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
-. ...+...-++|||||.+++--
T Consensus 102 ~~---~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 102 LT---DIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp ST---TCCTTTGGGGEEEEEEEEECC
T ss_pred Cc---cchHHHHHHHhhccceEEEec
Confidence 11 112446679999999998873
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.76 E-value=0.097 Score=39.54 Aligned_cols=90 Identities=11% Similarity=0.169 Sum_probs=55.0
Q ss_pred CCCeEEeecC--cchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCccceec----cccccCC--CCCCccCeeeecc
Q 027609 70 FVRNVMDMRA--VYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYH----DWCESFN--TYPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~Gc--G~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~----d~~e~f~--~yp~sFDlVh~~~ 140 (221)
+..+||-.|| |.|.++..+++. |..++-++ ..++.++.+.+.|...++. |+.+.+. +-++.||+|....
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~--~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~ 105 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTA--GTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEML 105 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCEEEEEeccccccccccccccccCccccccc--ccccccccccccCcccccccccccHHHHhhhhhccCCceEEeecc
Confidence 4678999997 455566666553 66653333 2234678888887644331 1111110 1237799887641
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
....+.+.-++|||||.++.-
T Consensus 106 --------g~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 106 --------ANVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp --------HHHHHHHHHHHEEEEEEEEEC
T ss_pred --------cHHHHHHHHhccCCCCEEEEE
Confidence 235677778999999999975
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=90.66 E-value=0.074 Score=44.19 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=61.2
Q ss_pred cchhhhhhhHHHHHh----hhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC----CHHHHHHcCc
Q 027609 44 DFTADYQHWKNVVSK----SYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD----TLPIIYERGL 115 (221)
Q Consensus 44 ~f~~d~~~W~~~v~~----~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~----~l~~a~eRGl 115 (221)
+|......|+..-.. ...+.++++.+...+|||+-||.|+.+..|+..|..| +.++.+. +++-+.+|..
T Consensus 58 dF~~g~~~~R~~~~~~~~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V---~~iEr~p~l~~ll~d~l~r~~ 134 (250)
T d2oyra1 58 DFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRV---RMLERNPVVAALLDDGLARGY 134 (250)
T ss_dssp CSSSHHHHHHHHHSCGGGSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCE---EEEECCHHHHHHHHHHHHHHH
T ss_pred ECCCcHHHHhhhccCcchhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEE---EEEccCHHHHHHHHHHHHHHH
Confidence 377777777664221 1223344666666689999999999999999888654 5555432 2222222210
Q ss_pred ------------cceec-cccccCCCCCCccCeeeeccccccccccHHHHHHHh
Q 027609 116 ------------FGLYH-DWCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEV 156 (221)
Q Consensus 116 ------------~~~~~-d~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~Em 156 (221)
+.+++ |-.+-+..+...||+|...=.|.+-. .-..+-.||
T Consensus 135 ~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIYlDPMFp~~~-Ksa~~kk~m 187 (250)
T d2oyra1 135 ADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHKQ-KSALVKKEM 187 (250)
T ss_dssp HCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEEECCCCCCCC-C-----HHH
T ss_pred hCchhHHHHhhhheeecCcHHHHHhccCCCCCEEEECCCCcccc-ccccchhHH
Confidence 11222 32333444557899999998886544 223344443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=89.06 E-value=0.18 Score=38.25 Aligned_cols=91 Identities=20% Similarity=0.113 Sum_probs=54.4
Q ss_pred CCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceecccccc-------CC--CCCCccCeee
Q 027609 70 FVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCES-------FN--TYPRTYDLLH 137 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~-------f~--~yp~sFDlVh 137 (221)
...+||-+|||. |.++..+++. |+. +|+.++.+ +.++.+.+-|--.++..-.+. .. +.++.||+|.
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBS--EEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCEEEEECCCccchhheecccccccc--cccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 368899999985 5566666554 652 34555554 477888887753222111111 10 1235688876
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
-. .- . ...+.+.-++|||||.+++-
T Consensus 106 d~-----vG-~-~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 106 EA-----TG-D-SRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp EC-----SS-C-TTHHHHHHHHEEEEEEEEEC
T ss_pred ec-----CC-c-hhHHHHHHHHhcCCCEEEEE
Confidence 43 11 1 24567777999999999875
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=88.56 E-value=0.13 Score=42.42 Aligned_cols=43 Identities=7% Similarity=-0.012 Sum_probs=32.3
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
......||.+|||.|.++..|++++.. +..++.. .+++...++
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll~~~~~---v~aiEiD~~l~~~L~~~ 62 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVGERLDQ---LTVIELDRDLAARLQTH 62 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHHTTCSC---EEEECCCHHHHHHHHTC
T ss_pred CCCCCEEEEECCCchHHHHHHHccCCc---eEEEEeccchhHHHHHH
Confidence 445888999999999999999998754 4556654 366666554
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.32 E-value=1.6 Score=31.94 Aligned_cols=104 Identities=12% Similarity=0.226 Sum_probs=67.2
Q ss_pred eEEeecCcc-h-HHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeecccccccccc
Q 027609 73 NVMDMRAVY-G-GFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKS 148 (221)
Q Consensus 73 ~VLD~GcG~-G-~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d 148 (221)
+|+=+|||. | ++|..|.+.+.- ..|..+|.+ +.++.+.+.|++...-.. ..... ...|+|..+-= .. .
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~-~~I~~~D~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~dlIila~p---~~-~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFK-GKIYGYDINPESISKAVDLGIIDEGTTS---IAKVEDFSPDFVMLSSP---VR-T 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCC-SEEEEECSCHHHHHHHHHTTSCSEEESC---GGGGGGTCCSEEEECSC---HH-H
T ss_pred EEEEEccCHHHHHHHHHHHhcCCC-eEEEEEECChHHHHHHHHhhcchhhhhh---hhhhhccccccccccCC---ch-h
Confidence 577799996 4 578889887732 257788876 588999999886543321 11122 56788876521 11 4
Q ss_pred HHHHHHHhhhhccCCeEEEEEcC--hhhHHHHHHHHHh
Q 027609 149 LKAVVAEVDRILRPDGNLILRDD--AETIVEVEDLVKS 184 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii~d~--~~~~~~i~~i~~~ 184 (221)
-..++.|+...++|+-.++-.-. ....+.+++.+..
T Consensus 75 ~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~ 112 (171)
T d2g5ca2 75 FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK 112 (171)
T ss_dssp HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG
T ss_pred hhhhhhhhhccccccccccccccccHHHHHHHHHhhcc
Confidence 66788999999998866644333 4456666665443
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.26 E-value=0.26 Score=36.85 Aligned_cols=92 Identities=17% Similarity=0.023 Sum_probs=56.7
Q ss_pred CCCeEEeecCcchHHHHHHhh--CCCeEEEeccCCCC-CCHHHHHHcCccceeccccccC--------CCCCCccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKD--LKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESF--------NTYPRTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~--~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f--------~~yp~sFDlVh~ 138 (221)
...+||=+|||..|+.+...- .|.. +|+.+|.. +-++.+.+-|....+..-.+.+ .++++.||+|..
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~--~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAA--QVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCc--eEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 356899999998876665433 3653 35666654 4788888877533222100100 013456787665
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
. .. + ...+...-..|||||.+++--
T Consensus 104 ~-----~G-~-~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 104 C-----TG-A-EASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp C-----SC-C-HHHHHHHHHHSCTTCEEEECS
T ss_pred c-----cC-C-chhHHHHHHHhcCCCEEEEEe
Confidence 3 11 1 356777889999999999874
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.08 E-value=0.2 Score=41.81 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=29.5
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE 112 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e 112 (221)
......||++|||.|.++..|++++..+ +.++.. ++++...+
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~~v---~aiE~D~~l~~~L~~ 61 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLLEKAKKV---VACELDPRLVAELHK 61 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSSEE---EEEESCHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHhcCCcE---EEEEEccchhHHHHH
Confidence 3347789999999999999999987543 444443 24444443
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=85.23 E-value=6.5 Score=31.24 Aligned_cols=132 Identities=18% Similarity=0.218 Sum_probs=70.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHcCccce-eccccccCCCCC-CccCeeeecc---ccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGLFGL-YHDWCESFNTYP-RTYDLLHADH---LFS 143 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eRGl~~~-~~d~~e~f~~yp-~sFDlVh~~~---v~~ 143 (221)
+..+|+|+=||.||+...|...|..+ +..+|... .++.-... .+.. ..|..+ +..-. ..+|+++++- -|+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~--v~a~e~d~~a~~~~~~N-~~~~~~~Di~~-~~~~~~~~~Dll~ggpPCq~fS 85 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAEC--VYSNEWDKYAQEVYEMN-FGEKPEGDITQ-VNEKTIPDHDILCAGFPCQAFS 85 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEE--EEEECCCHHHHHHHHHH-HSCCCBSCGGG-SCGGGSCCCSEEEEECCCTTTC
T ss_pred CCCeEEEECccccHHHHHHHHCCCeE--EEEEeCCHHHHHHHHHH-CCCCCcCchhc-Cchhhcceeeeeecccccchhh
Confidence 45679999999999999999888655 34445432 33322222 2222 223222 22222 4688988763 333
Q ss_pred c------ccc---cHHHHHHHhhhhccCCeEEEEE--------cChhhHHHHHHHHHhcCCeEE--Eeec------CCCe
Q 027609 144 T------IKK---SLKAVVAEVDRILRPDGNLILR--------DDAETIVEVEDLVKSLHWDVR--MIYT------NDNQ 198 (221)
Q Consensus 144 h------~~~---d~~~vL~EmdRVLRPGG~~ii~--------d~~~~~~~i~~i~~~l~W~~~--~~~~------~~~e 198 (221)
- ..+ +....+.++-+.+||. +|++= +....++.+...+..+...+. +.+. +.++
T Consensus 86 ~ag~~~g~~d~r~~l~~~~~~~i~~~kP~-~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl~a~~~GvPQ~R~ 164 (327)
T d2c7pa1 86 ISGKQKGFEDSRGTLFFDIARIVREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRE 164 (327)
T ss_dssp TTSCCCGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCE
T ss_pred hhhhhcCCcccchhHHHHHHHHHhccCCc-EEecccchhhhhhccchhhHHhhhHHHhcCCcceeeEecHHHcCCCchhh
Confidence 1 111 2334444445557885 33332 223345666677777766554 2232 2355
Q ss_pred e-EEEEEec
Q 027609 199 G-MLCVHKT 206 (221)
Q Consensus 199 ~-~l~~~K~ 206 (221)
+ ++++.|.
T Consensus 165 R~fivg~r~ 173 (327)
T d2c7pa1 165 RIYMICFRN 173 (327)
T ss_dssp EEEEEEEBG
T ss_pred hheeeeecc
Confidence 5 4666664
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=83.48 E-value=1.5 Score=32.17 Aligned_cols=91 Identities=15% Similarity=0.051 Sum_probs=54.1
Q ss_pred CCCeEEeecCcchH-HHHHHhh-CCCeEEEeccCCCC-CCHHHHHHcCcccee-ccc--------cccC-CCCCCccCee
Q 027609 70 FVRNVMDMRAVYGG-FAAALKD-LKVWVMNVVPIESP-DTLPIIYERGLFGLY-HDW--------CESF-NTYPRTYDLL 136 (221)
Q Consensus 70 ~~r~VLD~GcG~G~-faa~L~~-~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~-~d~--------~e~f-~~yp~sFDlV 136 (221)
...+||=+|||.-| +++.+++ .|+. ++.++.+ +-++.+++-|....+ .+- .+.+ .++.+.+|+|
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~---vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAF---VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCEEEEEcccccchhhHhhHhhhccc---ccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 36689999999544 4444444 3654 4556654 478888887753322 110 0000 0123557776
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.-. . .-...+..+-++|||||.+++--
T Consensus 103 id~------~-g~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 103 IDC------S-GNEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp EEC------S-CCHHHHHHHHHHSCTTCEEEECS
T ss_pred eec------C-CChHHHHHHHHHHhcCCceEEEe
Confidence 532 1 12366788889999999999873
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=82.46 E-value=0.72 Score=34.57 Aligned_cols=91 Identities=10% Similarity=0.065 Sum_probs=54.4
Q ss_pred CCCeEEeecCcchHHHHHH-hh-CCCeEEEeccCCCC-CCHHHHHHcCccceec----cccccCCC-CCCccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAAL-KD-LKVWVMNVVPIESP-DTLPIIYERGLFGLYH----DWCESFNT-YPRTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L-~~-~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~----d~~e~f~~-yp~sFDlVh~~~v 141 (221)
...+||=+|||.-++++.. ++ .+..+ +.-.+.+ +-++.+.+-|...++. |+.|...- .++.||+|.-.
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~--v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~-- 103 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASI--IIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALES-- 103 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSE--EEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEEC--
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccce--eeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEc--
Confidence 3777888999987755543 33 25443 3333443 4778888887643332 11111100 23567876532
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.- -...+.+.-++|||+|.+++-
T Consensus 104 ---~G--~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 104 ---TG--SPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp ---SC--CHHHHHHHHHTEEEEEEEEEC
T ss_pred ---CC--cHHHHHHHHhcccCceEEEEE
Confidence 11 246778889999999999885
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=80.55 E-value=0.63 Score=35.23 Aligned_cols=93 Identities=11% Similarity=0.032 Sum_probs=54.3
Q ss_pred CCCCCCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceecc----ccccCCC-CC-CccCee
Q 027609 66 INWSFVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHD----WCESFNT-YP-RTYDLL 136 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d----~~e~f~~-yp-~sFDlV 136 (221)
+++ ..+||=+|||. |.++..+++. |.. .|..+|.+ +-++.+.+-|..-++.. +.+.+.- .. +.||+|
T Consensus 25 ~~~--g~~VlI~GaG~vGl~~~q~ak~~Ga~--~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~v 100 (174)
T d1jqba2 25 IEM--GSSVVVIGIGAVGLMGIAGAKLRGAG--RIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRV 100 (174)
T ss_dssp CCT--TCCEEEECCSHHHHHHHHHHHTTTCS--CEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEE
T ss_pred CCC--CCEEEEEcCCcchhhhhhhhhccccc--ccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceE
Confidence 444 56788899997 5666666654 543 24555654 36788888775333221 1111100 12 568876
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.-. .. . ...+.+.-++|||||.+++-
T Consensus 101 id~-----~g-~-~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 101 IMA-----GG-G-SETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp EEC-----SS-C-TTHHHHHHHHEEEEEEEEEC
T ss_pred EEc-----cC-C-HHHHHHHHHHHhcCCEEEEE
Confidence 532 11 1 24456667999999999986
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.04 E-value=0.7 Score=35.48 Aligned_cols=89 Identities=12% Similarity=0.029 Sum_probs=53.5
Q ss_pred CCeEEeecC--cchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCccceec---cccccCC-CCCCccCeeeeccccc
Q 027609 71 VRNVMDMRA--VYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYH---DWCESFN-TYPRTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~Gc--G~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~---d~~e~f~-~yp~sFDlVh~~~v~~ 143 (221)
..+||=-|+ |.|.++-.|++. |+.|+-.+ ..++-.+.+.+-|-..++. ++.+... +=++.||+|.=.
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~--~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~---- 105 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEAST--GKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDP---- 105 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEE--SCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEEC----
T ss_pred CCEEEEEeccchHHHHHHHHHHHcCCceEEec--CchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEc----
Confidence 567887775 567888888754 77763322 2235778888887643321 1112111 123678876533
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEE
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.- ...+.+.-++|||||.++.-
T Consensus 106 -vg---g~~~~~~l~~l~~~Griv~~ 127 (176)
T d1xa0a2 106 -VG---GRTLATVLSRMRYGGAVAVS 127 (176)
T ss_dssp -ST---TTTHHHHHHTEEEEEEEEEC
T ss_pred -CC---chhHHHHHHHhCCCceEEEe
Confidence 11 34577888999999999876
|