Citrus Sinensis ID: 027611

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNtlhgvddniSKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR
Flexible Loop (DISEMBL)
MSQVFEGYERQYCELSAGLSRKCTAASALdgelkkqklseiktglddADALIRKMDlearslqpnvKAMLLSKLREYKTDlnnlknevkrvtsgnvnqAARDELLESGMADAMMVSADQRGRLLMsterlnhstdrikesrrTMLETEELGVSILQDLHQQRQSLLHAHntlhgvddniskSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR
Low Complexity Region (SEG)
MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR
Disordered region (IsUnstruct)
*******YERQYCELSAGLSRKCT**************************LI***************AMLLSKLREY**************************************************************************VSILQDL******LLHAHNTLHGVD********ILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKL**
Disordered Region (DISOPRED)
MSQVFEGYERQYCELSAG**************************LDDADALIRKMD******************REYKTDLNNLKNEVKR******************************************************LETEELGVSILQDLHQ************HG*DDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR
Disordered Region (DISEMBL)
MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR
Disordered Region (DISPRO)
*SQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTS****************A****VSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVxxxxxxxxxxxxxxxxxxxxxxxxxxxxNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q9LVP9	221	Vesicle transport v-SNARE	yes	no	1.0	1.0	0.737	5e-94
Q9SEL5	222	Vesicle transport v-SNARE	yes	no	0.995	0.990	0.701	5e-87
Q9SEL6	221	Vesicle transport v-SNARE	no	no	1.0	1.0	0.723	4e-86
O89116	217	Vesicle transport through	yes	no	0.959	0.976	0.327	3e-26
Q96AJ9	217	Vesicle transport through	yes	no	0.977	0.995	0.316	1e-25
Q9JI51	224	Vesicle transport through	yes	no	0.977	0.964	0.304	2e-23
P58200	232	Vesicle transport through	no	no	0.837	0.797	0.329	2e-15
O88384	232	Vesicle transport through	no	no	0.837	0.797	0.324	3e-15
Q2KIU0	232	Vesicle transport through	yes	no	0.850	0.810	0.324	3e-15
Q54CK6	217	Vesicle transport through	yes	no	0.859	0.875	0.271	3e-13

>sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1

 Score =  343 bits (880), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 163/221 (73%), Positives = 193/221 (87%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MSQ FE YERQYCE+SA LS+KCT+A ALDGE KKQ LSEIK+G+++A+AL++KMDLEAR
Sbjct: 1   MSQGFERYERQYCEISANLSKKCTSAIALDGEQKKQNLSEIKSGVEEAEALVKKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           +L PNVK+ LL KLREYK+DLNN K EVKR+TSGN+N  ARDELLE+GMAD +  SADQR
Sbjct: 61  NLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
            RL+MST+ L  +TDRIK+SRRT+LETEELGVSILQDLH QRQSLL AH TLHGVDDN+ 
Sbjct: 121 SRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHGVDDNVG 180

Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
           KSKKILT M+RRM+R+KW +G+II+VLV AI+ ILYFKLTR
Sbjct: 181 KSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLTR 221

May function as a v-SNARE responsible for targeting vesicles involved in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3

 Score =  320 bits (819), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 155/221 (70%), Positives = 187/221 (84%), Gaps = 1/221 (0%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASAL-DGELKKQKLSEIKTGLDDADALIRKMDLEA 59
           MS VFEGYERQYCELS  LSRKC +AS L +GE KK K++EIK+G+D+AD LIRKMDLEA
Sbjct: 1   MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60

Query: 60  RSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQ 119
           RSLQP+ KA+ LSKLREYK+DLN LK E KRV+S +   ++R+EL+ESGMAD   VSADQ
Sbjct: 61  RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120

Query: 120 RGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNI 179
           RGRL MS ERL+ S+DRI+ESRR MLETEE+G+SI+QDL QQRQ+LLHAHN LHGVDD I
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAI 180

Query: 180 SKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT 220
            KSKK+LTAMSRRM+R+KWI+ S+I  LV AI+LI+ +KL+
Sbjct: 181 DKSKKVLTAMSRRMTRNKWIITSVIVALVLAIILIISYKLS 221

May function as a v-SNARE responsible for the docking or fusion of transport vesicles within the trans-Golgi network (TGN). May be also involved in retrograde traffic to the cis-Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEL6|VTI11_ARATH Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2

 Score =  317 bits (812), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 160/221 (72%), Positives = 192/221 (86%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MS VF+GYERQYCELSA LS+KC++A +LDGE KKQKLSEIK+GL++A+ LIRKMDLEAR
Sbjct: 1   MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           +L PN+K+ LL KLRE+K+DLNN K EVKR+TSG +N AARDELLE+GMAD    SADQR
Sbjct: 61  TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
            RL+MSTERL  +TDR+K+SRRTM+ETEE+GVSILQDLH QRQSLL AH TLHGVDDNI 
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIG 180

Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
           KSKKILT M+RRM+++KW +G+II  L+ AI +ILYFKLT+
Sbjct: 181 KSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221

May function as a v-SNARE responsible for targeting AtELP-containing vesicles from the trans-Golgi network (TGN) to the prevacuolar compartment (PVC). May be also involved in retrograde traffic to the cis-Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 124/217 (57%), Gaps = 5/217 (2%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MS  FEGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R
Sbjct: 1   MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
            + P  + M  +++R YK ++  L+ + KR      ++  R+ELL     DA   S +QR
Sbjct: 61  EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEV-RNELL----GDAGNSSENQR 115

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
             LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A + L   D N+ 
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADANLG 175

Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYF 217
           KS +ILT M RR+ +++ ++  +  ++V AIL  + F
Sbjct: 176 KSSRILTGMLRRIIQNRILLVILGIIVVIAILTAIAF 212

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2. May be concerned with increased secretion of cytokines associated with cellular senescence.

Mus musculus (taxid: 10090)

>sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MS  FEGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R
Sbjct: 1   MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
            + P  + M  +++R YK ++  L+ + KR      ++  R+ELL     D    S +QR
Sbjct: 61  EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEV-RNELL----GDDGNSSENQR 115

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
             LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A   L   D N+ 
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLG 175

Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
           KS +ILT M RR+ +++ ++  +  ++V  IL+ + F + R
Sbjct: 176 KSSRILTGMLRRIIQNRILLVILGIIVVITILMAITFSVRR 216

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2. May be involved in increased cytokine secretion associated with cellular senescence.

Homo sapiens (taxid: 9606)

>sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 127/220 (57%), Gaps = 4/220 (1%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MS  FEGYE+ +  L+A ++ K +    L  + KKQ ++ ++  L++A  L+ +MDLE R
Sbjct: 1   MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELL-ESGMA--DAMMVSA 117
            + P  + M  +++R YK ++  L+ + KR      ++  R+ELL ++G +  + ++   
Sbjct: 61  EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDE-VRNELLGDAGNSSENQLIKLR 119

Query: 118 DQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDD 177
           ++R  LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A   L   D 
Sbjct: 120 EERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDA 179

Query: 178 NISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYF 217
           N+ KS +ILT M RR+ +++ ++  +  ++V  IL  + F
Sbjct: 180 NLGKSSRILTGMLRRIIQNRILLVILGIIVVITILTAITF 219

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2 (By similarity). May be concerned with increased secretion of cytokines associated with cellular senescence.

Rattus norvegicus (taxid: 10116)

>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus GN=Vti1b PE=1 SV=2

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 12/197 (6%)

Query: 32  ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91
           E KK+ + +      +A+  + +M+ E R      +  ++SKLR Y+ DL  L  EV R 
Sbjct: 39  EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNSMMSKLRNYRKDLAKLHREV-RS 97

Query: 92  TSGNVNQAARDEL------LESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTML 145
           T        R +L      LE+   + +     QR  LL  TE LN +T  I+ S R   
Sbjct: 98  TPLTATPGGRGDLKFGTYTLENEHLNRLQ---SQRALLLQGTESLNRATQSIERSHRIAA 154

Query: 146 ETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIIS 205
           ET+++G  I+++L +QR  L    + L   ++N+SKS+KIL +MSR++  +K ++ S+I 
Sbjct: 155 ETDQIGSEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLL-SVII 213

Query: 206 VLVFAILL-ILYFKLTR 221
           VL  AIL+ ++Y+K  R
Sbjct: 214 VLELAILVGLVYYKFFR 230

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Rattus norvegicus (taxid: 10116)

>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 12/197 (6%)

Query: 32  ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91
           E KK+ + +      +A+  + +M+ E R      +  ++SKLR Y+ DL  L  EV R 
Sbjct: 39  EEKKKLVRDFDENQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV-RS 97

Query: 92  TSGNVNQAARDEL------LESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTML 145
           T        R +L      LE+   + +     QR  LL  TE LN +T  I+ S R   
Sbjct: 98  TPLTAAPGGRGDLKYGTYTLENEHLNRLQ---SQRALLLQGTESLNRATQSIERSHRIAT 154

Query: 146 ETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIIS 205
           ET+++G  I+++L +QR  L    + L   ++N+SKS+KIL +MSR++  +K ++ S+I 
Sbjct: 155 ETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLL-SVII 213

Query: 206 VLVFAILL-ILYFKLTR 221
           +L  AIL+ ++Y+K  R
Sbjct: 214 LLELAILVGLVYYKFFR 230

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Mus musculus (taxid: 10090)

>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Bos taurus GN=VTI1B PE=2 SV=1

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 105/194 (54%), Gaps = 6/194 (3%)

Query: 32  ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91
           E KK+ + +      +A+  + +M+ E R    + +  ++SKLR Y+ DL  L  EV R 
Sbjct: 39  EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRTYRKDLAKLHREV-RS 97

Query: 92  TSGNVNQAARDELLESGMA---DAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETE 148
           T       AR ++     A   + M     QR  LL  T+ LN +T  I+ S R   ET+
Sbjct: 98  TPLTATPGARGDMKYGTYAVENEHMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETD 157

Query: 149 ELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLV 208
           ++G  I+++L +QR  L    + L    +N+SKS+KIL +MSR+++ +K ++ SI+ +L 
Sbjct: 158 QIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLL-SIVILLE 216

Query: 209 FAIL-LILYFKLTR 221
            AIL  ++Y+K  R
Sbjct: 217 LAILGGLVYYKFLR 230

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. May be concerned with increased secretion of cytokines associated with cellular senescence.

Bos taurus (taxid: 9913)

>sp|Q54CK6|VTI1A_DICDI Vesicle transport through interaction with t-SNAREs homolog 1A OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 101/195 (51%), Gaps = 5/195 (2%)

Query: 4   VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQ 63
           VFE  E+ +  +   ++R+        GE KK  + E++  +D+A   I +M+  A++  
Sbjct: 3   VFERTEQNFQHVCNSITRRIKQLPNYGGEKKKIAVREVENDIDEALKFISEMEKLAQNHP 62

Query: 64  PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSAD-QRGR 122
             +K  L +K ++Y +D+   K EV+     + NQ   +    S   D      D QR  
Sbjct: 63  QRIK--LQTKTKQYHSDIQKYKREVQLAQLQSSNQTNSNPW--SNAPDDYQSQYDNQRQH 118

Query: 123 LLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKS 182
           LL  +  L+ ++DR+  + +   ++E++G +IL DL +Q + +    + LH  DD I  +
Sbjct: 119 LLQGSNMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQGEQIRGMRDKLHETDDQIKSA 178

Query: 183 KKILTAMSRRMSRDK 197
           +KI+T ++RR++ +K
Sbjct: 179 RKIMTGIARRLATNK 193

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
225457347	221	PREDICTED: vesicle transport v-SNARE 13	0.990	0.990	0.876	1e-107
297733941	279	unnamed protein product [Vitis vinifera]	0.990	0.784	0.876	1e-107
255547331	221	vesicle transport V-snare protein vti1a,	1.0	1.0	0.846	1e-106
224080207	220	predicted protein [Populus trichocarpa]	0.990	0.995	0.785	1e-99
358249256	221	uncharacterized protein LOC100815385 [Gl	1.0	1.0	0.764	6e-99
225452897	221	PREDICTED: vesicle transport v-SNARE 13	1.0	1.0	0.791	9e-99
255578288	220	vesicle transport V-snare protein vti1a,	0.990	0.995	0.821	2e-98
296082955	285	unnamed protein product [Vitis vinifera]	1.0	0.775	0.791	2e-98
212721612	221	uncharacterized protein LOC100192626 [Ze	0.990	0.990	0.785	3e-98
357496517	221	Vesicle transport v-SNARE [Medicago trun	1.0	1.0	0.760	2e-97

>gi|225457347|ref|XP_002284602.1| PREDICTED: vesicle transport v-SNARE 13 [Vitis vinifera]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/219 (87%), Positives = 204/219 (93%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MSQVFEGYERQYCELSA LSRKCTAAS L+GE KKQK+SEIK GLDDADALIRKMDLEAR
Sbjct: 1   MSQVFEGYERQYCELSANLSRKCTAASLLNGEQKKQKVSEIKAGLDDADALIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           SLQP+VKAMLL+KLREYKTDLNN+KNEVKR+TS N NQAARD LLESGMAD M VSADQ+
Sbjct: 61  SLQPSVKAMLLAKLREYKTDLNNVKNEVKRITSANTNQAARDNLLESGMADTMTVSADQK 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
            RLLMST RLN S DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS
Sbjct: 121 TRLLMSTGRLNQSGDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180

Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKL 219
           KSKKILTAMSRRMSR+KWI+GS+I+ LV AI+LILYFKL
Sbjct: 181 KSKKILTAMSRRMSRNKWIIGSVIAALVLAIILILYFKL 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733941|emb|CBI15188.3| unnamed protein product [Vitis vinifera]

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/219 (87%), Positives = 204/219 (93%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MSQVFEGYERQYCELSA LSRKCTAAS L+GE KKQK+SEIK GLDDADALIRKMDLEAR
Sbjct: 59  MSQVFEGYERQYCELSANLSRKCTAASLLNGEQKKQKVSEIKAGLDDADALIRKMDLEAR 118

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           SLQP+VKAMLL+KLREYKTDLNN+KNEVKR+TS N NQAARD LLESGMAD M VSADQ+
Sbjct: 119 SLQPSVKAMLLAKLREYKTDLNNVKNEVKRITSANTNQAARDNLLESGMADTMTVSADQK 178

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
            RLLMST RLN S DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS
Sbjct: 179 TRLLMSTGRLNQSGDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 238

Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKL 219
           KSKKILTAMSRRMSR+KWI+GS+I+ LV AI+LILYFKL
Sbjct: 239 KSKKILTAMSRRMSRNKWIIGSVIAALVLAIILILYFKL 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547331|ref|XP_002514723.1| vesicle transport V-snare protein vti1a, putative [Ricinus communis] gi|223546327|gb|EEF47829.1| vesicle transport V-snare protein vti1a, putative [Ricinus communis]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/221 (84%), Positives = 207/221 (93%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MSQVF+GYERQYCELSA LSRKCT+ S LDGELKKQKLSEIKTGLD+A+ LI+KMDLEAR
Sbjct: 1   MSQVFDGYERQYCELSANLSRKCTSTSVLDGELKKQKLSEIKTGLDEAETLIQKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           S  PN+KA+LL+KLREYKTDLNNLKNE KR+TS ++NQA RDELLESG ADA MVSADQR
Sbjct: 61  SFPPNLKAVLLAKLREYKTDLNNLKNESKRITSSHINQATRDELLESGKADATMVSADQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
           GRLLMSTERLN STDRIKESRRTMLETEELGVS+LQDLHQQRQ+LLHAHNTL GVDDNI 
Sbjct: 121 GRLLMSTERLNQSTDRIKESRRTMLETEELGVSVLQDLHQQRQALLHAHNTLQGVDDNIG 180

Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
           +SKK+LTAMSRRMSR+KWI+GS+I++LVFAILLILYFKLTR
Sbjct: 181 RSKKVLTAMSRRMSRNKWIIGSLIALLVFAILLILYFKLTR 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080207|ref|XP_002306052.1| predicted protein [Populus trichocarpa] gi|118481869|gb|ABK92871.1| unknown [Populus trichocarpa] gi|222849016|gb|EEE86563.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 172/219 (78%), Positives = 203/219 (92%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           M+ +FEGYERQYCELS+ LSRKCTAA +LDGE KKQK+SE+K GL+DA+ALIRKMDLEAR
Sbjct: 1   MTDIFEGYERQYCELSSNLSRKCTAALSLDGEKKKQKISEVKAGLEDAEALIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           +LQPNVKA+LL+KLREYK+DLNNLK EVKR+ SGN+N AARDELLE+GM DA+M S DQR
Sbjct: 61  NLQPNVKAVLLAKLREYKSDLNNLKTEVKRIGSGNLNAAARDELLEAGMTDALMASGDQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
            RL+M+TERL HS+DRIK+SRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNI 
Sbjct: 121 SRLMMATERLYHSSDRIKDSRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIG 180

Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKL 219
           KSK++LTA+SRRM+R+KW++ +II+VLV A++LILYFKL
Sbjct: 181 KSKRVLTAISRRMNRNKWMISAIIAVLVVAVILILYFKL 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249256|ref|NP_001239763.1| uncharacterized protein LOC100815385 [Glycine max] gi|255634551|gb|ACU17638.1| unknown [Glycine max]

 Score =  365 bits (938), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 169/221 (76%), Positives = 202/221 (91%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MS VFEGYERQYCELSA L++KCTAA AL+GE KKQK+SE+K G+D+A+ALIRKMDLEAR
Sbjct: 1   MSNVFEGYERQYCELSANLAKKCTAAGALNGEQKKQKVSEVKAGIDEAEALIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           SLQPN+K +LL+KLREYK+DLNNLK+EVK++ SGN+N +ARDELLESGMADAM  SADQR
Sbjct: 61  SLQPNIKGVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMADAMTASADQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
            RL++STERLN ++DR+K+SRRTMLETEELGVSILQDLH QRQSLLHAHNTLHGVDDNI 
Sbjct: 121 TRLMVSTERLNKTSDRVKDSRRTMLETEELGVSILQDLHSQRQSLLHAHNTLHGVDDNIG 180

Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
           KSKKILT MSRRM+++KW++G I+ VLV AI++ILYFK ++
Sbjct: 181 KSKKILTNMSRRMNKNKWVIGGIVLVLVIAIIVILYFKFSK 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452897|ref|XP_002283972.1| PREDICTED: vesicle transport v-SNARE 13 [Vitis vinifera]

 Score =  365 bits (936), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 175/221 (79%), Positives = 203/221 (91%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           M +VF+GYERQYCELSA LS+KCT AS LDGE K+Q++SEIK GLD+AD+LIRKMDLEAR
Sbjct: 1   MGEVFDGYERQYCELSANLSKKCTTASLLDGEQKRQQISEIKAGLDEADSLIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
            LQPNVKA+LL+KLREYK+DLNNLK+EVKR+ S N NQAARD+LLESGMADAM VSA+QR
Sbjct: 61  GLQPNVKAVLLAKLREYKSDLNNLKSEVKRIASANSNQAARDDLLESGMADAMSVSANQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
            RL+MST+RLN S+DRIKES+RTMLETEELGVSILQDLHQQRQSLLHA++TLHGVDDN+S
Sbjct: 121 ARLMMSTDRLNQSSDRIKESKRTMLETEELGVSILQDLHQQRQSLLHANDTLHGVDDNVS 180

Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
           +SKKILT MSRRMSR+K I+GSII+VLV  I LILYFKL++
Sbjct: 181 RSKKILTNMSRRMSRNKCIIGSIIAVLVVVIALILYFKLSK 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578288|ref|XP_002530011.1| vesicle transport V-snare protein vti1a, putative [Ricinus communis] gi|223530490|gb|EEF32373.1| vesicle transport V-snare protein vti1a, putative [Ricinus communis]

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 180/219 (82%), Positives = 205/219 (93%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MS+VFEGYERQYCELSA LSRKCT A ALDGE KKQKLSE+K GL+DA++LIRKMDLEAR
Sbjct: 1   MSEVFEGYERQYCELSANLSRKCTTAGALDGEQKKQKLSEVKAGLEDAESLIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           SLQPNVKA+LL+KLREYK+DLNNLK+EVKR+ SGN+N AARDELLESGMADA+  SADQR
Sbjct: 61  SLQPNVKAVLLAKLREYKSDLNNLKSEVKRIASGNLNSAARDELLESGMADALTASADQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
            RL+M+TERLNHS+DR+K+SRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNI 
Sbjct: 121 SRLMMTTERLNHSSDRVKDSRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIG 180

Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKL 219
           KSKK+LTAM+RRM+R+KWI+G++I+VLV  I LILYFKL
Sbjct: 181 KSKKVLTAMARRMNRNKWIIGAVIAVLVVVIGLILYFKL 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082955|emb|CBI22256.3| unnamed protein product [Vitis vinifera]

 Score =  363 bits (932), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 175/221 (79%), Positives = 203/221 (91%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           M +VF+GYERQYCELSA LS+KCT AS LDGE K+Q++SEIK GLD+AD+LIRKMDLEAR
Sbjct: 65  MGEVFDGYERQYCELSANLSKKCTTASLLDGEQKRQQISEIKAGLDEADSLIRKMDLEAR 124

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
            LQPNVKA+LL+KLREYK+DLNNLK+EVKR+ S N NQAARD+LLESGMADAM VSA+QR
Sbjct: 125 GLQPNVKAVLLAKLREYKSDLNNLKSEVKRIASANSNQAARDDLLESGMADAMSVSANQR 184

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
            RL+MST+RLN S+DRIKES+RTMLETEELGVSILQDLHQQRQSLLHA++TLHGVDDN+S
Sbjct: 185 ARLMMSTDRLNQSSDRIKESKRTMLETEELGVSILQDLHQQRQSLLHANDTLHGVDDNVS 244

Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
           +SKKILT MSRRMSR+K I+GSII+VLV  I LILYFKL++
Sbjct: 245 RSKKILTNMSRRMSRNKCIIGSIIAVLVVVIALILYFKLSK 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212721612|ref|NP_001131312.1| uncharacterized protein LOC100192626 [Zea mays] gi|194691154|gb|ACF79661.1| unknown [Zea mays] gi|195639842|gb|ACG39389.1| vesicle transport v-SNARE 13 [Zea mays] gi|413951054|gb|AFW83703.1| Vesicle transport v-SNARE 13 isoform 1 [Zea mays] gi|413951055|gb|AFW83704.1| Vesicle transport v-SNARE 13 isoform 2 [Zea mays] gi|413951056|gb|AFW83705.1| Vesicle transport v-SNARE 13 isoform 3 [Zea mays]

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 172/219 (78%), Positives = 198/219 (90%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MS+VFEGYERQYCE SA LSRKCTAASALDGE KKQKLSEI++G+++A++LIRKMDLEAR
Sbjct: 1   MSEVFEGYERQYCEASASLSRKCTAASALDGERKKQKLSEIQSGVEEAESLIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           SLQP++KA LL+KLREYK+DLNN+K+E+KR+++ N  QA R+ELLESGMAD + VS DQR
Sbjct: 61  SLQPSIKAGLLAKLREYKSDLNNVKSELKRISAPNARQATREELLESGMADTLAVSTDQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
           GRL+M+TERLN STDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAH TLHGVDDNI 
Sbjct: 121 GRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHTTLHGVDDNIG 180

Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKL 219
           KSKKIL AMS+RM R+KWI+G II+ L  AIL ILYFKL
Sbjct: 181 KSKKILAAMSKRMDRNKWIIGGIITALALAILFILYFKL 219

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496517|ref|XP_003618547.1| Vesicle transport v-SNARE [Medicago truncatula] gi|355493562|gb|AES74765.1| Vesicle transport v-SNARE [Medicago truncatula] gi|388504124|gb|AFK40128.1| unknown [Medicago truncatula]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 168/221 (76%), Positives = 200/221 (90%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MS VFEGYERQYCELSA LS+KCTAA+AL+GE KKQK+SE+K+G+D+A+ALIRKMDLEAR
Sbjct: 1   MSNVFEGYERQYCELSANLSKKCTAATALNGEQKKQKVSEVKSGIDEAEALIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           S+QPN+K +LL+KLREYK+DLNNLK+EVK++ SGN+N +ARDELLESGMAD M  SADQR
Sbjct: 61  SMQPNIKGVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMADTMTASADQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
            RL+ STERLN + +R+K+SRRTMLETEELGVSILQDLH QRQSLLHAHNTLHGVDDNI 
Sbjct: 121 TRLMTSTERLNKTGERVKDSRRTMLETEELGVSILQDLHSQRQSLLHAHNTLHGVDDNIG 180

Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
           KSKKI+T MSRRM+++KWI+G I+ VLV AI+ ILYFKL +
Sbjct: 181 KSKKIMTNMSRRMNKNKWIIGCIVLVLVVAIIAILYFKLVK 221

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2175733	221	SGR4 "SHOOT GRAVITROPSIM 4" [A	1.0	1.0	0.723	1.3e-82
TAIR|locus:2200595	222	VTI1B [Arabidopsis thaliana (t	0.995	0.990	0.701	2.7e-77
TAIR|locus:2094662	195	VTI13 "vesicle transport V-sna	0.769	0.871	0.741	9.7e-64
TAIR|locus:2164830	207	AT5G39630 [Arabidopsis thalian	0.837	0.893	0.470	3.3e-40
ASPGD|ASPL0000044157	224	AN1973 [Emericella nidulans (t	0.968	0.955	0.315	5e-28
MGI|MGI:1855699	217	Vti1a "vesicle transport throu	0.959	0.976	0.327	8.2e-28
UNIPROTKB|J9NRK3	217	VTI1A "Uncharacterized protein	0.977	0.995	0.316	1.3e-27
UNIPROTKB|Q96AJ9	217	VTI1A "Vesicle transport throu	0.977	0.995	0.316	1.7e-27
RGD|621490	224	Vti1a "vesicle transport throu	0.977	0.964	0.304	2.5e-26
UNIPROTKB|G4NC77	233	MGG_01124 "Vesicle transport V	0.981	0.931	0.325	5.9e-25

TAIR|locus:2175733 SGR4 "SHOOT GRAVITROPSIM 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 160/221 (72%), Positives = 192/221 (86%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
             MS VF+GYERQYCELSA LS+KC++A +LDGE KKQKLSEIK+GL++A+ LIRKMDLEAR
Sbjct:     1 MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60

Query:    61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
             +L PN+K+ LL KLRE+K+DLNN K EVKR+TSG +N AARDELLE+GMAD    SADQR
Sbjct:    61 TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120

Query:   121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
              RL+MSTERL  +TDR+K+SRRTM+ETEE+GVSILQDLH QRQSLL AH TLHGVDDNI 
Sbjct:   121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIG 180

Query:   181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
             KSKKILT M+RRM+++KW +G+II  L+ AI +ILYFKLT+
Sbjct:   181 KSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005770 "late endosome" evidence=IDA;TAS

GO:0005802 "trans-Golgi network" evidence=IDA;TAS

GO:0006896 "Golgi to vacuole transport" evidence=IGI

GO:0004872 "receptor activity" evidence=TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA;IMP

GO:0005829 "cytosol" evidence=RCA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2200595 VTI1B [Arabidopsis thaliana (taxid:3702)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 155/221 (70%), Positives = 187/221 (84%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASAL-DGELKKQKLSEIKTGLDDADALIRKMDLEA 59
             MS VFEGYERQYCELS  LSRKC +AS L +GE KK K++EIK+G+D+AD LIRKMDLEA
Sbjct:     1 MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60

Query:    60 RSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQ 119
             RSLQP+ KA+ LSKLREYK+DLN LK E KRV+S +   ++R+EL+ESGMAD   VSADQ
Sbjct:    61 RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120

Query:   120 RGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNI 179
             RGRL MS ERL+ S+DRI+ESRR MLETEE+G+SI+QDL QQRQ+LLHAHN LHGVDD I
Sbjct:   121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAI 180

Query:   180 SKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT 220
              KSKK+LTAMSRRM+R+KWI+ S+I  LV AI+LI+ +KL+
Sbjct:   181 DKSKKVLTAMSRRMTRNKWIITSVIVALVLAIILIISYKLS 221

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;IPI

GO:0000149 "SNARE binding" evidence=TAS

GO:0004872 "receptor activity" evidence=TAS

GO:0005770 "late endosome" evidence=TAS

GO:0005802 "trans-Golgi network" evidence=IDA;TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA;TAS

GO:0005483 "soluble NSF attachment protein activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006623 "protein targeting to vacuole" evidence=RCA;IMP

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2094662 VTI13 "vesicle transport V-snare 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 126/170 (74%), Positives = 148/170 (87%)

Query:    52 IRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMAD 111
             ++KMDLEAR+L PNVK+ LL KLREYK+DLNN K EVKR+TSGN+N  ARDELLE+GMAD
Sbjct:    26 VKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMAD 85

Query:   112 AMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNT 171
              +  SADQR RL+MST+ L  +TDRIK+SRRT+LETEELGVSILQDLH QRQSLL AH T
Sbjct:    86 TLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHET 145

Query:   172 LHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
             LHGVDDN+ KSKKILT M+RRM+R+KW +G+II+VLV AI+ ILYFKLTR
Sbjct:   146 LHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLTR 195

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=IPI

GO:0000149 "SNARE binding" evidence=TAS

GO:0004872 "receptor activity" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

TAIR|locus:2164830 AT5G39630 [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 89/189 (47%), Positives = 132/189 (69%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
             MS VF  Y++QY ELS  LS+KC+ A +L G  KK+KLSEI   L++A+ LI KMD  A 
Sbjct:     1 MSNVFHEYDQQYSELSINLSKKCSLAFSLKGGEKKEKLSEITYDLENAEKLISKMDHAAS 60

Query:    61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
             +L PN+K++LL KL+E K+ L  L+NE+KR TS N+    R+E+LE+  AD     ADQR
Sbjct:    61 NLPPNIKSILLEKLKESKSSLKRLRNEIKRNTSENLKVTTREEVLEAEKADL----ADQR 116

Query:   121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
              RL+ STE L  + + IK+S+R +LETE +G+SIL++L +Q++SL ++   LH +DD + 
Sbjct:   117 SRLMKSTEGLVRTREMIKDSQRKLLETENIGISILENLQRQKESLQNSQAMLHEIDDTVK 176

Query:   181 KSKKILTAM 189
             +S+ I+ ++
Sbjct:   177 ESRSIVRSI 185

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;IPI

GO:0000149 "SNARE binding" evidence=TAS

GO:0004872 "receptor activity" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=RCA

ASPGD|ASPL0000044157 AN1973 [Emericella nidulans (taxid:162425)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 69/219 (31%), Positives = 125/219 (57%)

Query:     2 SQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARS 61
             S++   YE +   + A L++K    + L GE +   + + +  L++A  L+ +M LE ++
Sbjct:    11 SEMLSSYETELNLVQADLNQKLDQIAELSGEQRNSTIRQAERALEEATELLDQMRLEKQN 70

Query:    62 LQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRG 121
             +    ++ + ++ R Y TD++  K ++K ++     +A   +       DA +   +QR 
Sbjct:    71 IPSAARSKVNTRFRNYATDIDEAKRKLKSLSDDR--KALFGDRYTDDPQDAHL---EQRQ 125

Query:   122 RLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISK 181
             +LL  TERL  S+ R++ES+R  LETE +G ++L DLHQQR+++ H H  L   + N+ K
Sbjct:   126 QLLSGTERLERSSARLRESQRIALETEGIGANVLADLHQQRETITHTHGMLGQSESNVDK 185

Query:   182 SKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT 220
             S K L  M+RRM+ ++ I  +II+VL+  I  ++Y K +
Sbjct:   186 SIKTLKGMARRMATNRLITIAIITVLILLIFAVIYSKFS 224

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0000324 "fungal-type vacuole" evidence=IEA

GO:0031201 "SNARE complex" evidence=IEA

GO:0030428 "cell septum" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006896 "Golgi to vacuole transport" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IEA

MGI|MGI:1855699 Vti1a "vesicle transport through interaction with t-SNAREs 1A" [Mus musculus (taxid:10090)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 71/217 (32%), Positives = 124/217 (57%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
             MS  FEGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R
Sbjct:     1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60

Query:    61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
              + P  + M  +++R YK ++  L+ + KR      ++  R+ELL     DA   S +QR
Sbjct:    61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEV-RNELL----GDAGNSSENQR 115

Query:   121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
               LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A + L   D N+ 
Sbjct:   116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADANLG 175

Query:   181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYF 217
             KS +ILT M RR+ +++ ++  +  ++V AIL  + F
Sbjct:   176 KSSRILTGMLRRIIQNRILLVILGIIVVIAILTAIAF 212

GO:0005484 "SNAP receptor activity" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0031201 "SNARE complex" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=ISO

UNIPROTKB|J9NRK3 VTI1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 70/221 (31%), Positives = 124/221 (56%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
             MS  FEGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R
Sbjct:     1 MSSDFEGYEQDFAVLTAEITGKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60

Query:    61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
              + P  + M  +++R YK ++  L+ + KR      ++  R+ELL     D    S +QR
Sbjct:    61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEV-RNELL----GDDGNSSENQR 115

Query:   121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
               LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A   L   D N+ 
Sbjct:   116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLG 175

Query:   181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
             KS ++LT M RR+ +++ ++  +  +LV  IL+ + F + R
Sbjct:   176 KSSRVLTGMLRRIIQNRILVVILAIILVVTILMAITFSVRR 216

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|Q96AJ9 VTI1A "Vesicle transport through interaction with t-SNAREs homolog 1A" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 70/221 (31%), Positives = 124/221 (56%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
             MS  FEGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R
Sbjct:     1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVR 60

Query:    61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
              + P  + M  +++R YK ++  L+ + KR      ++  R+ELL     D    S +QR
Sbjct:    61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEV-RNELL----GDDGNSSENQR 115

Query:   121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
               LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A   L   D N+ 
Sbjct:   116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLG 175

Query:   181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
             KS +ILT M RR+ +++ ++  +  ++V  IL+ + F + R
Sbjct:   176 KSSRILTGMLRRIIQNRILLVILGIIVVITILMAITFSVRR 216

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IMP;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005484 "SNAP receptor activity" evidence=IDA

GO:0031201 "SNARE complex" evidence=TAS

RGD|621490 Vti1a "vesicle transport through interaction with t-SNAREs 1A" [Rattus norvegicus (taxid:10116)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 67/220 (30%), Positives = 127/220 (57%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
             MS  FEGYE+ +  L+A ++ K +    L  + KKQ ++ ++  L++A  L+ +MDLE R
Sbjct:     1 MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60

Query:    61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELL-ESGMA--DAMMVSA 117
              + P  + M  +++R YK ++  L+ + KR      ++  R+ELL ++G +  + ++   
Sbjct:    61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEV-RNELLGDAGNSSENQLIKLR 119

Query:   118 DQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDD 177
             ++R  LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A   L   D 
Sbjct:   120 EERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDA 179

Query:   178 NISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYF 217
             N+ KS +ILT M RR+ +++ ++  +  ++V  IL  + F
Sbjct:   180 NLGKSSRILTGMLRRIIQNRILLVILGIIVVITILTAITF 219

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0031201 "SNARE complex" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO;ISS

GO:0043025 "neuronal cell body" evidence=IDA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IDA

UNIPROTKB|G4NC77 MGG_01124 "Vesicle transport V-SNARE protein vti1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 72/221 (32%), Positives = 121/221 (54%)

Query:     2 SQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEA-R 60
             +++F  YE +   + A LS+K  +   L GE +K  LS+    L++AD L+ +M LE  +
Sbjct:    11 TELFASYEAELKLVQADLSQKLDSIPDLTGEPRKAALSQASRALEEADELLGQMRLEKQK 70

Query:    61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGN---VNQAARDELLESGMADAMMVSA 117
             ++  + +A +  + R Y+TD++ ++  +  + S          +D    SG A A  V  
Sbjct:    71 NIPSSSRARVNQRFRNYETDVDAVRRRLDALASDRSALFGGRYQDNPSGSGGASASDVQL 130

Query:   118 DQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDD 177
             +QR +LL  T+RL+ S+ R+K+S    LETE +G S L+DL  QR  + H    L   + 
Sbjct:   131 EQREQLLRGTDRLDRSSRRLKDSHALALETEAIGASTLRDLAHQRSQIQHTTEVLVQSEG 190

Query:   178 NISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFK 218
              + +S K L  M+RRM+ ++ I  +II+VLV  IL ++  K
Sbjct:   191 YVDRSVKTLRGMARRMATNRIITIAIITVLVMLILAVIVSK 231

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2KIU0	VTI1B_BOVIN	No assigned EC number	0.3247	0.8506	0.8103	yes	no
Q9JI51	VTI1A_RAT	No assigned EC number	0.3045	0.9773	0.9642	yes	no
Q9SEL5	VTI12_ARATH	No assigned EC number	0.7013	0.9954	0.9909	yes	no
Q9SEL6	VTI11_ARATH	No assigned EC number	0.7239	1.0	1.0	no	no
Q9LVP9	VTI13_ARATH	No assigned EC number	0.7375	1.0	1.0	yes	no
P78768	VTI1_SCHPO	No assigned EC number	0.3045	0.8552	0.8831	yes	no
O89116	VTI1A_MOUSE	No assigned EC number	0.3271	0.9592	0.9769	yes	no
Q96AJ9	VTI1A_HUMAN	No assigned EC number	0.3167	0.9773	0.9953	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
pfam05008	79	pfam05008, V-SNARE, Vesicle transport v-SNARE prot	8e-24
pfam12352	66	pfam12352, V-SNARE_C, Snare region anchored in the	6e-18
pfam03908	92	pfam03908, Sec20, Sec20	2e-04

>gnl|CDD|203149 pfam05008, V-SNARE, Vesicle transport v-SNARE protein N-terminus

 Score = 90.0 bits (224), Expect = 8e-24
 Identities = 34/79 (43%), Positives = 51/79 (64%)

Query: 12 YCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLL 71
          + EL A + RK      L GE +K  L EI+  LD+A+ L+ +M+LE R+L  + +A   
Sbjct: 1  FKELLAEIKRKLARIPKLSGEERKAALREIERKLDEAEELLDQMELEVRNLPSSERAKYN 60

Query: 72 SKLREYKTDLNNLKNEVKR 90
          +KLREYK++L+ LK E+KR
Sbjct: 61 AKLREYKSELDKLKRELKR 79

V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this. This domain is the N-terminal half of the V-Snare proteins. Length = 79

>gnl|CDD|152787 pfam12352, V-SNARE_C, Snare region anchored in the vesicle membrane C-terminus

 Score = 74.6 bits (184), Expect = 6e-18
 Identities = 29/66 (43%), Positives = 39/66 (59%)

Query: 128 ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILT 187
           ERL    DR+K S R   ET  +G +IL+DLH QR++L  A N LH  D+ + KS   L 
Sbjct: 1   ERLLREHDRLKNSHRIADETISIGQAILEDLHSQRETLKRARNKLHNTDNRLGKSNSTLR 60

Query: 188 AMSRRM 193
            ++RR 
Sbjct: 61  LINRRR 66

Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008. Length = 66

>gnl|CDD|112708 pfam03908, Sec20, Sec20

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 13/86 (15%), Positives = 38/86 (44%)

Query: 134 TDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRM 193
           T+ ++   + +++        L +L     SL  A+      +  +S+S+K++  + RR 
Sbjct: 7   TESLRRISQLLVQGVLQSALNLDELVASTNSLEKANEEYKQFEGVLSRSRKLVKKLERRD 66

Query: 194 SRDKWIMGSIISVLVFAILLILYFKL 219
             DK ++       +  +  +++ ++
Sbjct: 67  HTDKRLVYLSFGFFLACVSYVVWKRI 92

Sec20 is a membrane glycoprotein associated with secretory pathway. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	100.0
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	99.91
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	99.87
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	99.59
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	99.52
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	99.44
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	98.75
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	98.27
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	98.23
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	98.01
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	97.91
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	97.9
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	97.75
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	97.59
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	97.4
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	97.21
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	97.19
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	97.17
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	97.06
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	97.04
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	97.02
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	96.33
KOG2678	244	consensus Predicted membrane protein [Function unk	96.18
PF04210	70	MtrG: Tetrahydromethanopterin S-methyltransferase,	96.05
PRK01026	77	tetrahydromethanopterin S-methyltransferase subuni	95.77
COG4064	75	MtrG Tetrahydromethanopterin S-methyltransferase,	95.74
TIGR01149	70	mtrG N5-methyltetrahydromethanopterin:coenzyme M m	95.59
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	95.12
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	95.0
PRK10884	206	SH3 domain-containing protein; Provisional	94.73
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	94.49
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	93.86
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	92.95
PF12911	56	OppC_N: N-terminal TM domain of oligopeptide trans	92.25
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	90.38
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	90.17
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	89.82
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	89.76
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	89.58
PHA03240	258	envelope glycoprotein M; Provisional	86.66
PF15188	85	CCDC-167: Coiled-coil domain-containing protein 16	86.65
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	85.45
TIGR01294	52	P_lamban phospholamban. This model represents the	85.3
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	83.11
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	83.04
PF04272	52	Phospholamban: Phospholamban; InterPro: IPR005984	82.78
PHA02650	81	hypothetical protein; Provisional	82.74
PHA03164	88	hypothetical protein; Provisional	81.55
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	81.47
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	81.0
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	80.75
PHA02975	69	hypothetical protein; Provisional	80.52

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-50  Score=310.71  Aligned_cols=220  Identities=55%  Similarity=0.795  Sum_probs=209.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 027611            1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTD   80 (221)
Q Consensus         1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~   80 (221)
                      ||+.|+.||++|+.+..+|+.+++.++..++++|...+++++..++||.+++.+|+.|++.+||+.|..|..|++.|+++
T Consensus         1 ms~~fe~yEqqy~~l~a~it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksd   80 (220)
T KOG1666|consen    1 MSSLFEGYEQQYRELSAEITKKIGRALSLPGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSD   80 (220)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCChhhhhHhhccCccCcccCcHHHHHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611           81 LNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQ  160 (221)
Q Consensus        81 l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~~~~~~~~r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~  160 (221)
                      ++.++.++++........++|+++++....|....+.+||++|+++++++++++++|.+++|.+.|||+||.+|+.+|+.
T Consensus        81 l~~l~~e~k~~~~~~~~~~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~  160 (220)
T KOG1666|consen   81 LKKLKRELKRTTSRNLNAGDRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILEDLHG  160 (220)
T ss_pred             HHHHHHHHHHhhccccccchHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998844334568899988765554556789999999999999999999999999999999999999999999


Q ss_pred             hhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611          161 QRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT  220 (221)
Q Consensus       161 Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~  220 (221)
                      ||++|.+++..+.++++++++|+++++.|.||+.+|||++++||++++++|++++|+||+
T Consensus       161 QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf~  220 (220)
T KOG1666|consen  161 QREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKFT  220 (220)
T ss_pred             HHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999996

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.7e-22  Score=157.15  Aligned_cols=205  Identities=17%  Similarity=0.228  Sum_probs=165.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhhhcch-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 027611            1 MSQVFEGYERQYCELSAGLSRKCTAASALDG-ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKT   79 (221)
Q Consensus         1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~   79 (221)
                      |+.+|.+-..    .+.+++..+.+++.... .+....+.+++..+.++...+..|+.-++..||+.|....-++.+.+.
T Consensus         1 m~~ly~~t~~----~~~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~rq~~rlr~dQl~~   76 (213)
T KOG3251|consen    1 MDALYQSTNR----QLDKLQRGLIRLERTIKTQEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKSRQAARLRVDQLLE   76 (213)
T ss_pred             CchHHHHHHH----HHHHHHHHHHHHHccccccchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHH
Confidence            6666666554    45557777777766544 677889999999999999999999999999999888777777999999


Q ss_pred             HHHHHHHHHHHhhccCC----ChhhhhHhhccCccCcccCcHHHHHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHH
Q 027611           80 DLNNLKNEVKRVTSGNV----NQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSIL  155 (221)
Q Consensus        80 ~l~~l~~~~~~~~~~~~----~~~~r~~Ll~~~~~~~~~~~~~~r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~  155 (221)
                      ++..++..+++......    ...+|.+|+++.+...++...-+.|..++.+       +.+.++++++++....|.+|+
T Consensus        77 d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~~~~~~~~~~D~el~~~-------d~l~~s~~~lDd~l~~G~~il  149 (213)
T KOG3251|consen   77 DVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTNGATGTSIPFDEELQEN-------DSLKRSHNMLDDLLESGSAIL  149 (213)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHHHhh-------hHHHHHHhhHHHHHHHHHHHH
Confidence            99999999988766643    1456888888765432222111133334333       568889999999999999999


Q ss_pred             HHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          156 QDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILY  216 (221)
Q Consensus       156 ~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~  216 (221)
                      ++|.+||-.|.++++++.++...|+.|+.+|+-|.||...||+|+|+.+++|++++++++|
T Consensus       150 e~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~  210 (213)
T KOG3251|consen  150 ENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMYLFYR  210 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999888888877765553

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=6.4e-21  Score=148.06  Aligned_cols=203  Identities=23%  Similarity=0.263  Sum_probs=163.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhhhcchH-----------------HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC
Q 027611            1 MSQVFEGYERQYCELSAGLSRKCTAASALDGE-----------------LKKQKLSEIKTGLDDADALIRKMDLEARSLQ   63 (221)
Q Consensus         1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~-----------------~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~   63 (221)
                      |++.|+....+.+.+..+++.+|..+.+....                 .-...-.+++..|++...+.++|.. ....|
T Consensus         3 ~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~-~~~s~   81 (231)
T KOG3208|consen    3 SSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMND-CASSP   81 (231)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHh-hccCC
Confidence            56899999999999999999999888532111                 2245567788888888888888887 33334


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHhhccCccCc---cc-CcHHHHHHHhhhhhHhhcchHHHHH
Q 027611           64 PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADA---MM-VSADQRGRLLMSTERLNHSTDRIKE  139 (221)
Q Consensus        64 ~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~---~~-~~~~~r~~ll~~~~~l~~~~~~L~~  139 (221)
                      ++ -+.....+++|++.|.++.++|++.+..+....+|+.|++++..+.   +. ++...++.       +-+..++|++
T Consensus        82 a~-~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~~~~~~~~~~~e~-------~lkE~~~in~  153 (231)
T KOG3208|consen   82 AN-SAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADISSYPSASGFNRGEM-------YLKEHDHINN  153 (231)
T ss_pred             CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCchHHH-------HHHHhccccc
Confidence            33 3467899999999999999999999888766678889988765443   11 11111233       3334466888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          140 SRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAIL  212 (221)
Q Consensus       140 s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~  212 (221)
                      +.++++|..++|.++.++|+.||..+.+++.++.++...+|..+.+|.+|++|..+|.+||.+||.+|+++++
T Consensus       154 s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llll  226 (231)
T KOG3208|consen  154 SIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLL  226 (231)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999976553

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=99.59  E-value=3e-14  Score=96.72  Aligned_cols=79  Identities=38%  Similarity=0.648  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611           12 YCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKR   90 (221)
Q Consensus        12 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~   90 (221)
                      |..+..+|..+++.+++.+|++|...+..++..|++|+++|++|+.|++++|++.|..|..+++.|+.+++.++++|++
T Consensus         1 f~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~~   79 (79)
T PF05008_consen    1 FQALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELKK   79 (79)
T ss_dssp             HHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6788999999999999888899999999999999999999999999999999999999999999999999999999864

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=99.52  E-value=5.1e-14  Score=92.26  Aligned_cols=65  Identities=38%  Similarity=0.605  Sum_probs=61.2

Q ss_pred             HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHH
Q 027611          129 RLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRM  193 (221)
Q Consensus       129 ~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~  193 (221)
                      .+.+++++|++|.++++|++++|.+|+.+|..||++|.++++++.++++.++.|+++|+.|.||.
T Consensus         2 ~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~   66 (66)
T PF12352_consen    2 RLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK   66 (66)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence            45667788999999999999999999999999999999999999999999999999999999984

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=99.44  E-value=2.3e-12  Score=89.91  Aligned_cols=87  Identities=22%  Similarity=0.370  Sum_probs=81.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          132 HSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAI  211 (221)
Q Consensus       132 ~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i  211 (221)
                      +.+..|.++++++.+..+.|..+++.|..|+++|..+++...++.+.+..|+++++.+.|+..+||+++++.++++++++
T Consensus         5 ~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v   84 (92)
T PF03908_consen    5 DVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVV   84 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34577999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHH
Q 027611          212 LLILYFK  218 (221)
Q Consensus       212 ~~vl~~k  218 (221)
                      ++|+|.+
T Consensus        85 ~yI~~rR   91 (92)
T PF03908_consen   85 LYILWRR   91 (92)
T ss_pred             HHHhhhc
Confidence            8888765

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=8.6e-06  Score=65.78  Aligned_cols=180  Identities=17%  Similarity=0.186  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhcch------HHHHHHHH-HHHhhHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHH
Q 027611            9 ERQYCELSAGLSRKCTAASALDG------ELKKQKLS-EIKTGLDDADALIRKMDLEARS--LQPNVKAMLLSKLREYKT   79 (221)
Q Consensus         9 e~e~~~~~~~i~~~l~~~~~~~~------~~~~~~~~-~~~~~l~ea~~~l~~m~~E~~~--~~~~~r~~~~~k~~~~~~   79 (221)
                      ..+...+.+.+...+.+.....+      ++....++ .++..++.++..+.-++.-...  +|..+-..=...+.+.+.
T Consensus        12 ~~e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El~~R~~~i~~lr~   91 (235)
T KOG3202|consen   12 KNETLKLSEEIQGLYQRRSELLKDTGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFELSRRRRFIDNLRT   91 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHHHHHHHHHHHHHH
Confidence            34888888888888888743322      12333333 4444444444444433332221  121111222455677778


Q ss_pred             HHHHHHHHHHHhhccCCChhhhhHhhccCccCc----c---cCcH-HHHHHHhhhhhHhhcchHHHHHHHHHHHHHHHHH
Q 027611           80 DLNNLKNEVKRVTSGNVNQAARDELLESGMADA----M---MVSA-DQRGRLLMSTERLNHSTDRIKESRRTMLETEELG  151 (221)
Q Consensus        80 ~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~----~---~~~~-~~r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g  151 (221)
                      .+..++..|.......  ...|..|++....++    +   ++.+ -+... ...+..+..+...|+.....+.-..++|
T Consensus        92 q~~~~~~~~~~~~~~~--~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~-~~qqqm~~eQDe~Ld~ls~ti~rlk~~a  168 (235)
T KOG3202|consen   92 QLRQMKSKMAMSGFAN--SNIRDILLGPEKSPNLDEAMSRASGLDNVQEIV-QLQQQMLQEQDEGLDGLSATVQRLKGMA  168 (235)
T ss_pred             HHHHHHHHHHhhcccc--ccchhhhcCCCCCCchhhhHHHhhccCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888887733221  123777776533221    0   1111 11111 1223456677788888899999999999


Q ss_pred             HHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH
Q 027611          152 VSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR  191 (221)
Q Consensus       152 ~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r  191 (221)
                      ..+-++|..|..-|......++.+.+.+.+..+-+..|.+
T Consensus       169 ~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~  208 (235)
T KOG3202|consen  169 LAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR  208 (235)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=98.27  E-value=0.0002  Score=59.04  Aligned_cols=81  Identities=16%  Similarity=0.183  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027611          138 KESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISV-LVFAILLILY  216 (221)
Q Consensus       138 ~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~-l~~~i~~vl~  216 (221)
                      ++.-.++....+.+......|......|.++...++.-...++.+..-++.+.++-..  |++|++|++ +++.|+.|+|
T Consensus       170 ~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~~Fi~mvl~  247 (251)
T PF09753_consen  170 EEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVIIVFIMMVLF  247 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH
Confidence            3444455555666777778889999999999999999999999999888888766555  666654443 4444445555


Q ss_pred             HHhc
Q 027611          217 FKLT  220 (221)
Q Consensus       217 ~k~~  220 (221)
                      .|+|
T Consensus       248 iri~  251 (251)
T PF09753_consen  248 IRIF  251 (251)
T ss_pred             heeC
Confidence            5654

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=0.0019  Score=53.18  Aligned_cols=74  Identities=18%  Similarity=0.320  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLV  208 (221)
Q Consensus       135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~  208 (221)
                      ..+.++.....|.-+|=.++..-...|.|.+.+++++|++++-+++.|.+.|-+.--|+..|+|+++=|+++++
T Consensus       227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~i  300 (311)
T KOG0812|consen  227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILI  300 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            44666666677777777788888889999999999999999999999999999999999999999986655543

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=98.01  E-value=0.00027  Score=48.72  Aligned_cols=86  Identities=19%  Similarity=0.309  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          134 TDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILL  213 (221)
Q Consensus       134 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~  213 (221)
                      .+.+...+..++++.++-.+-+..+-...+.|.....+..++...-..=.+--+.+.|++.-.++-++++++++++++++
T Consensus         2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~   81 (89)
T PF00957_consen    2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL   81 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence            35678889999999999999999999999999999999999999888888888999999998888888777777777776


Q ss_pred             HHHHHh
Q 027611          214 ILYFKL  219 (221)
Q Consensus       214 vl~~k~  219 (221)
                      ++++-+
T Consensus        82 ~i~~~~   87 (89)
T PF00957_consen   82 IIIIVI   87 (89)
T ss_dssp             HHHHTT
T ss_pred             HHHHHH
Confidence            666543

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.008  Score=50.58  Aligned_cols=81  Identities=15%  Similarity=0.261  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILT---AMSRRMSRDKWIMGSIISVLVFAI  211 (221)
Q Consensus       135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~---~m~rr~~~dk~il~~ii~~l~~~i  211 (221)
                      +.+.+..+.+.|..++=.....-...|.|.+.++..+|....+.+..|..-++   ...++..+.|||.+++++++++++
T Consensus       206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~  285 (297)
T KOG0810|consen  206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVL  285 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHH
Confidence            33556666677777777777777889999999999999999999999987777   777777777777665555544444


Q ss_pred             HHHH
Q 027611          212 LLIL  215 (221)
Q Consensus       212 ~~vl  215 (221)
                      ++++
T Consensus       286 v~~i  289 (297)
T KOG0810|consen  286 VVVI  289 (297)
T ss_pred             hhhh
Confidence            4333

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.0046  Score=51.14  Aligned_cols=193  Identities=13%  Similarity=0.138  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhc---------c-hHHHHHHHHH----HHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 027611            5 FEGYERQYCELSAGLSRKCTAASAL---------D-GELKKQKLSE----IKTGLDDADALIRKMDLEARSLQPNVKAML   70 (221)
Q Consensus         5 f~~ye~e~~~~~~~i~~~l~~~~~~---------~-~~~~~~~~~~----~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~   70 (221)
                      |-+-.+|+..++..+.++++.+.+.         + +.+....++.    +...|..++..+.....-.+..||+.+.-.
T Consensus        59 wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~  138 (305)
T KOG0809|consen   59 WVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLR  138 (305)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHH
Confidence            4455677777777777777766321         1 1111222222    223333444444433333333456665555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCC----hhhh-hHhhcc----Ccc--Ccc-cCcHHHHHHHh--hhhh-HhhcchH
Q 027611           71 LSKLREYKTDLNNLKNEVKRVTSGNVN----QAAR-DELLES----GMA--DAM-MVSADQRGRLL--MSTE-RLNHSTD  135 (221)
Q Consensus        71 ~~k~~~~~~~l~~l~~~~~~~~~~~~~----~~~r-~~Ll~~----~~~--~~~-~~~~~~r~~ll--~~~~-~l~~~~~  135 (221)
                      .+-...+-..+..+..+|+..+..+-.    ..++ .+.+.+    .+.  +.. +...-+.++++  .+++ ....-..
T Consensus       139 ~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~~erE~  218 (305)
T KOG0809|consen  139 KNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVVREREK  218 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHHHHHHHH
Confidence            566667777777787888777665411    0111 122211    000  000 01112223332  1111 1111112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027611          136 RIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDK  197 (221)
Q Consensus       136 ~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk  197 (221)
                      .+......+.|..++=.+.-.-...|.-.+.+++-++..+.-.+..|.+-+.+..+-..+++
T Consensus       219 EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~  280 (305)
T KOG0809|consen  219 EVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNK  280 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCC
Confidence            23444444555555556655666799999999999999999999999999999888777776

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=97.75  E-value=0.014  Score=46.75  Aligned_cols=80  Identities=16%  Similarity=0.265  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSK----KILTAMSRRMSRDKWIMGSIISVLVFA  210 (221)
Q Consensus       135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~----~li~~m~rr~~~dk~il~~ii~~l~~~  210 (221)
                      .-|....+++.|..++=+.+-+....|.+....+.+.+.+...++..+.    +-++. .|..+.+||+.|+|+++.+++
T Consensus       185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~v  263 (280)
T COG5074         185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIIIV  263 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHHH
Confidence            3477788889999999999888999999999999999999888887765    55666 788888998888776666555


Q ss_pred             HHHHH
Q 027611          211 ILLIL  215 (221)
Q Consensus       211 i~~vl  215 (221)
                      |++|+
T Consensus       264 iv~vv  268 (280)
T COG5074         264 IVVVV  268 (280)
T ss_pred             HHHHH
Confidence            55554

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.0018  Score=46.28  Aligned_cols=83  Identities=13%  Similarity=0.286  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          134 TDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS----KSKKILTAMSRRMSRDKWIMGSIISVLVF  209 (221)
Q Consensus       134 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~----~a~~li~~m~rr~~~dk~il~~ii~~l~~  209 (221)
                      ++.+.+++..++|+.+|-.+-.+..-+--++|....++.+.+...-.    .|.++=++|-.+-++-++|++++++++++
T Consensus        28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~  107 (116)
T KOG0860|consen   28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV  107 (116)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678889999999999988888888877888888887777655543    45566677777777888888777777766


Q ss_pred             HHHHHHH
Q 027611          210 AILLILY  216 (221)
Q Consensus       210 ~i~~vl~  216 (221)
                      +|++.+|
T Consensus       108 iiii~~~  114 (116)
T KOG0860|consen  108 VIIIYIF  114 (116)
T ss_pred             HHHHHHh
Confidence            6655554

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.057  Score=44.78  Aligned_cols=87  Identities=14%  Similarity=0.143  Sum_probs=65.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 027611          133 STDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMS---RRMSRDKWIMGSIISVLVF  209 (221)
Q Consensus       133 ~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~---rr~~~dk~il~~ii~~l~~  209 (221)
                      -.+.+.+..+-+.|..+|=.+...-.+.|.+.+..+..++..+..++..|+.-+++=.   ++...-+||+.+|++++++
T Consensus       178 R~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~v~l  257 (269)
T KOG0811|consen  178 REQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGPVGL  257 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHH
Confidence            3455667777777777777777777889999999999999999999999997776543   3344444666666666777


Q ss_pred             HHHHHHHHHh
Q 027611          210 AILLILYFKL  219 (221)
Q Consensus       210 ~i~~vl~~k~  219 (221)
                      ++++++|..+
T Consensus       258 ii~l~i~~~~  267 (269)
T KOG0811|consen  258 IIGLIIAGIA  267 (269)
T ss_pred             HHHHHHHHhh
Confidence            7777777654

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.21  E-value=0.074  Score=42.16  Aligned_cols=144  Identities=18%  Similarity=0.190  Sum_probs=76.9

Q ss_pred             HHHhhHHHHHHHHHHHHHHHhcCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHhhccCccCcccCcH
Q 027611           40 EIKTGLDDADALIRKMDLEARSLQPNVK--AMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSA  117 (221)
Q Consensus        40 ~~~~~l~ea~~~l~~m~~E~~~~~~~~r--~~~~~k~~~~~~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~~~~~~  117 (221)
                      .+..+|.+++..++.+..|++..| +.+  ......      -...+..+=.     ......|.-|+.+          
T Consensus        69 ~~~~KlR~yksdl~~l~~e~k~~~-~~~~~~~~rde------~~~~~~add~-----~~~~dQR~rLl~n----------  126 (220)
T KOG1666|consen   69 SYLSKLREYKSDLKKLKRELKRTT-SRNLNAGDRDE------LLEALEADDQ-----NISADQRARLLQN----------  126 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-ccccccchHHH------HHhhhhcccc-----ccchhHHHHHHhh----------
Confidence            456667777777777777777766 110  000000      0111111100     0012356777754          


Q ss_pred             HHHHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHH-HHHHHHHH
Q 027611          118 DQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTA-MSRRMSRD  196 (221)
Q Consensus       118 ~~r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~-m~rr~~~d  196 (221)
                        .++|-+.++++.++..-..++..+..+..+==..=-+.|..-|+.|..++.++..-...|..   ..++ +..+....
T Consensus       127 --TerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~t---M~RR~~~nk~~~~  201 (220)
T KOG1666|consen  127 --TERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTT---MTRRLIRNKFTLT  201 (220)
T ss_pred             --hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHH---HHHHHHHHHHHHH
Confidence              12334455556666566666666666665533344667777788888888887776655543   2333 34455555


Q ss_pred             HHHHHHHHHHHHHH
Q 027611          197 KWIMGSIISVLVFA  210 (221)
Q Consensus       197 k~il~~ii~~l~~~  210 (221)
                      -+|++.+++++++.
T Consensus       202 aii~~l~~~il~il  215 (220)
T KOG1666|consen  202 AIIALLVLAILLIL  215 (220)
T ss_pred             HHHHHHHHHHHHHH
Confidence            56665555555544

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.002  Score=45.86  Aligned_cols=79  Identities=16%  Similarity=0.164  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          136 RIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLIL  215 (221)
Q Consensus       136 ~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl  215 (221)
                      .++.-..-+--...+.-+|..+...|..-|.++++.++.+.+-|+.+=.-++.|.|+ -.-++..|.+++++++.+++++
T Consensus        37 ~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~lV~~fi~~~  115 (118)
T KOG3385|consen   37 AAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFSLVAFFILWV  115 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhhe
Confidence            344445555566677888888889999999999999999999999999999999999 4445555555555554443333

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.083  Score=44.28  Aligned_cols=86  Identities=17%  Similarity=0.291  Sum_probs=76.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          132 HSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAI  211 (221)
Q Consensus       132 ~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i  211 (221)
                      ...+-...+.+.+.|...+-.-..+.+-.|-..|..+.+...++..++..+|.-|++..+.-...+.++.+.+++|.+++
T Consensus       229 ~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~l  308 (316)
T KOG3894|consen  229 ELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFSL  308 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            33455777888899999999999999999999999999999999999999999999999998888888888888888888


Q ss_pred             HHHHHH
Q 027611          212 LLILYF  217 (221)
Q Consensus       212 ~~vl~~  217 (221)
                      .|+-||
T Consensus       309 LFldwy  314 (316)
T KOG3894|consen  309 LFLDWY  314 (316)
T ss_pred             HHHhhc
Confidence            888876

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=97.06  E-value=0.13  Score=42.34  Aligned_cols=87  Identities=18%  Similarity=0.198  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          134 TDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTA-MSRRMSRDKWIMGSIISVLVFAIL  212 (221)
Q Consensus       134 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~-m~rr~~~dk~il~~ii~~l~~~i~  212 (221)
                      ...+.+..+-+.|..+|=.+.-.-...|.+.+.+++-++..+..++..|++-+.+ +.-+..+.||-+|+.+++|+++.+
T Consensus       194 ~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lf  273 (283)
T COG5325         194 DEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLF  273 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHH
Confidence            3557777777888887777777777899999999999999999999999976655 555678899999988888888888


Q ss_pred             HHHHHHhc
Q 027611          213 LILYFKLT  220 (221)
Q Consensus       213 ~vl~~k~~  220 (221)
                      +.+..|..
T Consensus       274 v~l~~kl~  281 (283)
T COG5325         274 VSLIKKLR  281 (283)
T ss_pred             HHHHHHhc
Confidence            77776654

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.0024  Score=52.92  Aligned_cols=63  Identities=17%  Similarity=0.234  Sum_probs=56.9

Q ss_pred             HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH
Q 027611          129 RLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR  191 (221)
Q Consensus       129 ~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r  191 (221)
                      .-..+..+-.++..++.|++..|..++..|..|+++|.++...++.+...+..+.+.++.+..
T Consensus        73 ~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~  135 (273)
T KOG3065|consen   73 TAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG  135 (273)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            344566777888899999999999999999999999999999999999999999999988764

>smart00397 t_SNARE Helical region found in SNAREs

Probab=97.02  E-value=0.0038  Score=39.90  Aligned_cols=60  Identities=15%  Similarity=0.252  Sum_probs=53.5

Q ss_pred             HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHH
Q 027611          129 RLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTA  188 (221)
Q Consensus       129 ~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~  188 (221)
                      .+......|.+....+.++.++|..+...+..|.+.|.++..+++.+...+..+.+-+++
T Consensus         6 ~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~   65 (66)
T smart00397        6 MEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            455566779999999999999999999999999999999999999999999999876553

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=96.33  E-value=0.046  Score=34.74  Aligned_cols=58  Identities=16%  Similarity=0.279  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHH
Q 027611          135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRR  192 (221)
Q Consensus       135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr  192 (221)
                      +.|......+.+..+++.++-..+..|.+.|.++..+++.+...+..+.+-+....++
T Consensus         4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~   61 (63)
T PF05739_consen    4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4577788889999999999999999999999999999999999999999888887765

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>KOG2678 consensus Predicted membrane protein [Function unknown]

Probab=96.18  E-value=0.44  Score=38.09  Aligned_cols=76  Identities=12%  Similarity=0.140  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027611          146 ETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR  221 (221)
Q Consensus       146 ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~~  221 (221)
                      -...-+.+.-..|...++++..+-..++.-...|+..+.=+.+....-.-+.+.+..||++|+..|+.|++.+||.
T Consensus       166 slKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVsMiliiqifk  241 (244)
T KOG2678|consen  166 SLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVSMILIIQIFK  241 (244)
T ss_pred             HHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344455556678899999999999999999999999888888888877777777778888888888888888873

>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea

Probab=96.05  E-value=0.06  Score=34.72  Aligned_cols=57  Identities=14%  Similarity=0.286  Sum_probs=42.0

Q ss_pred             hHHHhhcchhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611          164 SLLHAHNTLHGVDDNISKSK-KILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT  220 (221)
Q Consensus       164 ~l~~~~~~~~~i~~~l~~a~-~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~  220 (221)
                      ....+.++++.++..+.-++ .+..++.++.-+|--|+|++++-+++.+++++..+.|
T Consensus        13 ~~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~~~~   70 (70)
T PF04210_consen   13 DFNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLSSMF   70 (70)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44566677777777777666 4567889999999999998887777666666655543

This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane

>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional

Probab=95.77  E-value=0.093  Score=34.65  Aligned_cols=57  Identities=12%  Similarity=0.333  Sum_probs=42.6

Q ss_pred             hHHHhhcchhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611          164 SLLHAHNTLHGVDDNISKSK-KILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT  220 (221)
Q Consensus       164 ~l~~~~~~~~~i~~~l~~a~-~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~  220 (221)
                      -...+.+++++++..+.-++ .+..++.++.-+|=-|+|++++-+++.++++.+..++
T Consensus        16 d~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i~~~~~~~~   73 (77)
T PRK01026         16 DFKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLVYIILSPIF   73 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566777788887777776 4567889999999999998887777666666665543

>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]

Probab=95.74  E-value=0.079  Score=34.10  Aligned_cols=54  Identities=15%  Similarity=0.333  Sum_probs=35.1

Q ss_pred             HhhcchhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611          167 HAHNTLHGVDDNISKSK-KILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT  220 (221)
Q Consensus       167 ~~~~~~~~i~~~l~~a~-~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~  220 (221)
                      .+++++++++..+.-.+ .+-..+.++.-+|--|+|++++-++++.+.++..+.|
T Consensus        19 e~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i~~~l~~~~   73 (75)
T COG4064          19 EIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMIYILLGVAF   73 (75)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555444 3457889999999999998766666555555555444

>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G

Probab=95.59  E-value=0.13  Score=33.09  Aligned_cols=56  Identities=13%  Similarity=0.313  Sum_probs=40.4

Q ss_pred             hHHHhhcchhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611          164 SLLHAHNTLHGVDDNISKSK-KILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKL  219 (221)
Q Consensus       164 ~l~~~~~~~~~i~~~l~~a~-~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~  219 (221)
                      -...+.+++++++..+.-++ .+..+..++.-+|--|+|++++-+++.+++...+.+
T Consensus        13 d~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~~~l~~~   69 (70)
T TIGR01149        13 EFNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIYILLSSM   69 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34556667777777777666 466788999999999999877777666655555544

coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=95.12  E-value=0.6  Score=31.86  Aligned_cols=55  Identities=18%  Similarity=0.341  Sum_probs=40.2

Q ss_pred             HHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          155 LQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLIL  215 (221)
Q Consensus       155 ~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl  215 (221)
                      ++.|..+.+.|...-....      ..|.++=+.|-.+-++-.+|+++++++++++|++++
T Consensus        33 L~~L~~kt~~L~~~a~~F~------k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~~   87 (89)
T PF00957_consen   33 LEELEDKTEELSDNAKQFK------KNAKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIVI   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHH
Confidence            5566677777666555554      366677788888999999999888888877777654

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=95.00  E-value=0.18  Score=31.30  Aligned_cols=53  Identities=13%  Similarity=0.262  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHH
Q 027611          135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILT  187 (221)
Q Consensus       135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~  187 (221)
                      ..|......+.+..+++..+...+..|.+.|.++..+++.+...+..+.+-+.
T Consensus         6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~   58 (60)
T cd00193           6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK   58 (60)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45777788888999999999999999999999999999999999999986554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.73  E-value=0.94  Score=36.20  Aligned_cols=62  Identities=18%  Similarity=0.271  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          151 GVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLIL  215 (221)
Q Consensus       151 g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl  215 (221)
                      ..+...+|..+.+.|   ...+..+...+.....-+....+....+.|+..++++++.+++++|+
T Consensus       130 ~~~~~~~L~~~n~~L---~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil  191 (206)
T PRK10884        130 SDSVINGLKEENQKL---KNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL  191 (206)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence            334444566666655   33444455555555555666666666555555555555555555554

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=94.49  E-value=2.4  Score=35.14  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhh
Q 027611            5 FEGYERQYCELSAGLSRKCTAAS   27 (221)
Q Consensus         5 f~~ye~e~~~~~~~i~~~l~~~~   27 (221)
                      ....+.++..+..++........
T Consensus        54 l~~L~~d~~~L~~k~~~~~~~~~   76 (264)
T PF06008_consen   54 LESLEQDVENLQEKATKVSRKAQ   76 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677777766666665553

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=93.86  E-value=0.22  Score=31.38  Aligned_cols=33  Identities=12%  Similarity=0.334  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          184 KILTAMSRRMSRDKWIMGSIISVLVFAILLILY  216 (221)
Q Consensus       184 ~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~  216 (221)
                      ....+-.+|+.+-++|+++++++++++++++.|
T Consensus        26 ~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~   58 (59)
T PF09889_consen   26 EEYRKRQKRMRKTQYIFFGIFILFLAVWIFMTF   58 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444556677777788888877776655555443

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=92.95  E-value=9.4  Score=36.95  Aligned_cols=88  Identities=16%  Similarity=0.323  Sum_probs=44.6

Q ss_pred             hhcchHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHhHHHhhcchhhh--------hhhHHHHHHHHHHHHHHHHHHHHHH
Q 027611          130 LNHSTDRIKESRRTM-LETEELGVSILQDLHQQRQSLLHAHNTLHGV--------DDNISKSKKILTAMSRRMSRDKWIM  200 (221)
Q Consensus       130 l~~~~~~L~~s~~~~-~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i--------~~~l~~a~~li~~m~rr~~~dk~il  200 (221)
                      ..++...+++.-..+ .+|..+-..+...|...++.+...-+.+...        ..+...+-+-......+--..+|+.
T Consensus       337 v~~~~~~~~~ip~~v~~qt~~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~~~  416 (806)
T PF05478_consen  337 VQEGNSRFNDIPEKVQNQTSDVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRSFEDEYEKYDSYRWIV  416 (806)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence            344555555544433 3555566666666666666666555555443        1111111111122234555667777


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 027611          201 GSIISVLVFAILLILYF  217 (221)
Q Consensus       201 ~~ii~~l~~~i~~vl~~  217 (221)
                      .+++.+++++|++++++
T Consensus       417 ~lil~~~llLIv~~~~l  433 (806)
T PF05478_consen  417 GLILCCVLLLIVLCLLL  433 (806)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666666555555544

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C

Probab=92.25  E-value=0.22  Score=30.81  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          184 KILTAMSRRMSRDKWIMGSIISVLVFAILLIL  215 (221)
Q Consensus       184 ~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl  215 (221)
                      +..+.+-+|..+||..+++++++++++++.++
T Consensus         3 s~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~   34 (56)
T PF12911_consen    3 SPWKDAWRRFRRNKLAVIGLIILLILVLLAIF   34 (56)
T ss_pred             CHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            34578889999999999887777666665544

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.38  E-value=1.5  Score=34.54  Aligned_cols=84  Identities=6%  Similarity=0.102  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          134 TDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILL  213 (221)
Q Consensus       134 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~  213 (221)
                      .+.|.+.+..+.|...+..+-.+.+-.-.|.|+=--++...+.++-..=++.-+++.|.++-..+=+.++++++++.+++
T Consensus       124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iy  203 (217)
T KOG0859|consen  124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIY  203 (217)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHH
Confidence            45688889999999999999888888888888888888877777776666666777766665555555555554444444


Q ss_pred             HHHH
Q 027611          214 ILYF  217 (221)
Q Consensus       214 vl~~  217 (221)
                      |++.
T Consensus       204 iiv~  207 (217)
T KOG0859|consen  204 IIVA  207 (217)
T ss_pred             HHHH
Confidence            5444

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=90.17  E-value=15  Score=33.92  Aligned_cols=85  Identities=19%  Similarity=0.200  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHH
Q 027611            8 YERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQP--NVKAMLLSKLREYKTDLNNLK   85 (221)
Q Consensus         8 ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~--~~r~~~~~k~~~~~~~l~~l~   85 (221)
                      .++++..+-+++...+..+..++.++-...+..+..   +++.++..|+.|+..-+.  ...+.+...+...+...+.+.
T Consensus       250 i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~---~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~  326 (560)
T PF06160_consen  250 IEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEE---RIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELK  326 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555544443333333333   334455566666654332  223345566666677777777


Q ss_pred             HHHHHhhccC
Q 027611           86 NEVKRVTSGN   95 (221)
Q Consensus        86 ~~~~~~~~~~   95 (221)
                      .++.++..++
T Consensus       327 ~e~~~v~~sY  336 (560)
T PF06160_consen  327 EELERVSQSY  336 (560)
T ss_pred             HHHHHHHHhc
Confidence            7777776665

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=89.82  E-value=16  Score=33.73  Aligned_cols=88  Identities=18%  Similarity=0.233  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhc--chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 027611            4 VFEGYERQYCELSAGLSRKCTAASAL--DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDL   81 (221)
Q Consensus         4 ~f~~ye~e~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l   81 (221)
                      .+.++.+++..+..........+...  +-..-...+.++...|.+++.-...|...+.+++.... ..+.++..++..+
T Consensus       345 ~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~-~Ar~~l~~~~~~l  423 (560)
T PF06160_consen  345 IVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEK-EAREKLQKLKQKL  423 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            34555556666555555555555321  22334455666666666666666666666666665543 4567777777777


Q ss_pred             HHHHHHHHHhh
Q 027611           82 NNLKNEVKRVT   92 (221)
Q Consensus        82 ~~l~~~~~~~~   92 (221)
                      ...++.+.+..
T Consensus       424 ~~ikR~lek~n  434 (560)
T PF06160_consen  424 REIKRRLEKSN  434 (560)
T ss_pred             HHHHHHHHHcC
Confidence            77777776543

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=89.76  E-value=1.5  Score=27.64  Aligned_cols=34  Identities=6%  Similarity=0.206  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611          187 TAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT  220 (221)
Q Consensus       187 ~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~  220 (221)
                      ....++..+.+-..++.++++++++++++|..||
T Consensus        26 ~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~~   59 (59)
T PF09889_consen   26 EEYRKRQKRMRKTQYIFFGIFILFLAVWIFMTFF   59 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3566777777778899999999999999988876

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.58  E-value=6.4  Score=31.50  Aligned_cols=65  Identities=14%  Similarity=0.177  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 027611          135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWI  199 (221)
Q Consensus       135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~i  199 (221)
                      .-+..-...+.++..+.+..++++-.-.+.|......-.+....-..-.+..+.|.++.+-+++-
T Consensus       134 ~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~a  198 (216)
T KOG0862|consen  134 RNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYA  198 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHH
Confidence            34555566666677777777777777667776666666555555556667778888888877766

>PHA03240 envelope glycoprotein M; Provisional

Probab=86.66  E-value=0.72  Score=36.71  Aligned_cols=21  Identities=19%  Similarity=0.705  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 027611          199 IMGSIISVLVFAILLILYFKL  219 (221)
Q Consensus       199 il~~ii~~l~~~i~~vl~~k~  219 (221)
                      ++|++|++++++|++++|+||
T Consensus       213 ~~WIiilIIiIiIIIL~cfKi  233 (258)
T PHA03240        213 IAWIFIAIIIIIVIILFFFKI  233 (258)
T ss_pred             HhHHHHHHHHHHHHHHHHHhc
Confidence            456666666666666677665

>PF15188 CCDC-167: Coiled-coil domain-containing protein 167

Probab=86.65  E-value=7.7  Score=26.36  Aligned_cols=58  Identities=21%  Similarity=0.345  Sum_probs=44.4

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611           37 KLSEIKTGLDDADALIRKMDLEARS--LQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG   94 (221)
Q Consensus        37 ~~~~~~~~l~ea~~~l~~m~~E~~~--~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~   94 (221)
                      .+..++..+.++..-++.++.-++.  +||..|..+.......++.+..+.+++..+...
T Consensus         6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE   65 (85)
T PF15188_consen    6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE   65 (85)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence            3556777788888888888777765  677788888888888888888888888877643

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.45  E-value=3.6  Score=34.35  Aligned_cols=59  Identities=8%  Similarity=0.209  Sum_probs=51.9

Q ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHH
Q 027611          131 NHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAM  189 (221)
Q Consensus       131 ~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m  189 (221)
                      +....-|.+...++.....+|.+.-.+|..|.+.|.++..+++..+..+..+++=++.+
T Consensus       214 deiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kL  272 (273)
T KOG3065|consen  214 DEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKL  272 (273)
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhc
Confidence            34556688899999999999999999999999999999999999999999998766543

>TIGR01294 P_lamban phospholamban

Probab=85.30  E-value=3.3  Score=24.36  Aligned_cols=28  Identities=18%  Similarity=0.284  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          189 MSRRMSRDKWIMGSIISVLVFAILLILY  216 (221)
Q Consensus       189 m~rr~~~dk~il~~ii~~l~~~i~~vl~  216 (221)
                      =.|+..++-++=+..|++|++.|++++.
T Consensus        23 qar~~lq~lfvnf~lilicllli~iivm   50 (52)
T TIGR01294        23 QARQNLQNLFINFCLILICLLLICIIVM   50 (52)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666767777777777777766653

This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=83.11  E-value=25  Score=29.04  Aligned_cols=24  Identities=13%  Similarity=0.170  Sum_probs=15.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhh
Q 027611            4 VFEGYERQYCELSAGLSRKCTAAS   27 (221)
Q Consensus         4 ~f~~ye~e~~~~~~~i~~~l~~~~   27 (221)
                      .+..++.++..+..++.....+..
T Consensus        46 ~~~~~e~~l~~L~~d~~~L~~k~~   69 (264)
T PF06008_consen   46 QLDPLEKELESLEQDVENLQEKAT   69 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667777777777777666654

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.04  E-value=23  Score=28.54  Aligned_cols=153  Identities=14%  Similarity=0.130  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 027611            4 VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNN   83 (221)
Q Consensus         4 ~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~   83 (221)
                      -|.+.+.|++.+++++....+.+..+.+.+  +.-..+-..|..=.+.+..+.-|.+..-.+.     ..++++..-+..
T Consensus        52 s~ks~~~eie~LLeql~~vndsm~~~~~s~--a~~aa~~htL~RHrEILqdy~qef~rir~n~-----~a~~e~~~Ll~s  124 (231)
T KOG3208|consen   52 SFKSLENEIEGLLEQLQDVNDSMNDCASSP--ANSAAVMHTLQRHREILQDYTQEFRRIRSNI-----DAKRERESLLES  124 (231)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhhccCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence            588889999999999888888775511100  0011244556666666666666666433321     111111111222


Q ss_pred             HHHHHHHhhccCCChhhhhHhhccCccCcccCcHHHHHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 027611           84 LKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQ  163 (221)
Q Consensus        84 l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~~~~~~~~r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre  163 (221)
                      .+......           ...++ +   ....+=++     ++..+++.+..+++-..+|.+|.+.-..=...|..=..
T Consensus       125 ~~~~~~~~-----------~~~~~-~---~~~e~~lk-----E~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~  184 (231)
T KOG3208|consen  125 VRADISSY-----------PSASG-F---NRGEMYLK-----EHDHINNSIRLVDELISQAQATRENLHSQRSVLGGINN  184 (231)
T ss_pred             HhhhhccC-----------CccCC-C---chHHHHHH-----HhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            22222111           11111 0   00011111     12345555556666677777777766666667777778


Q ss_pred             hHHHhhcchhhhhhhHHHHH
Q 027611          164 SLLHAHNTLHGVDDNISKSK  183 (221)
Q Consensus       164 ~l~~~~~~~~~i~~~l~~a~  183 (221)
                      ++.++-.+..-|.+-+.+.+
T Consensus       185 k~~~~a~r~P~IN~Ll~kIk  204 (231)
T KOG3208|consen  185 KVNNIANRFPAINQLLQKIK  204 (231)
T ss_pred             HHHHHHHhcchHHHHHHHHH
Confidence            88888888888888777665

>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium

Probab=82.78  E-value=4  Score=23.97  Aligned_cols=26  Identities=15%  Similarity=0.315  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          190 SRRMSRDKWIMGSIISVLVFAILLIL  215 (221)
Q Consensus       190 ~rr~~~dk~il~~ii~~l~~~i~~vl  215 (221)
                      .|+-+++-++=+..|++|++.|++++
T Consensus        24 a~qnlqelfvnfclilicllli~iiv   49 (52)
T PF04272_consen   24 ARQNLQELFVNFCLILICLLLICIIV   49 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666666554

PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.

>PHA02650 hypothetical protein; Provisional

Probab=82.74  E-value=2.6  Score=27.99  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Q 027611          199 IMGSIISVLVFAILLILYFKLTR  221 (221)
Q Consensus       199 il~~ii~~l~~~i~~vl~~k~~~  221 (221)
                      +++++++++++++++.+|+|..|
T Consensus        52 ~ii~i~~v~i~~l~~flYLK~~~   74 (81)
T PHA02650         52 FIFLIFSLIIVALFSFFVFKGYT   74 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            33446666777777888888653

>PHA03164 hypothetical protein; Provisional

Probab=81.55  E-value=2.1  Score=28.20  Aligned_cols=22  Identities=14%  Similarity=0.469  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 027611          196 DKWIMGSIISVLVFAILLILYF  217 (221)
Q Consensus       196 dk~il~~ii~~l~~~i~~vl~~  217 (221)
                      --+++.++++.+++.|+||+|.
T Consensus        59 tFlvLtgLaIamILfiifvlyv   80 (88)
T PHA03164         59 TFLVLTGLAIAMILFIIFVLYV   80 (88)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHh
Confidence            3355556666666677777764

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.47  E-value=30  Score=28.79  Aligned_cols=72  Identities=21%  Similarity=0.341  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHhhccC
Q 027611           33 LKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESG  108 (221)
Q Consensus        33 ~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~  108 (221)
                      .....+.+++.....++.-++.|+..+..+... ......++.+.+.+++.++.++..+...+   .+|.++|+.+
T Consensus        35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k-~~~~~~~i~~~~~eik~l~~eI~~~~~~I---~~r~~~l~~r  106 (265)
T COG3883          35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSK-IDELQKEIDQSKAEIKKLQKEIAELKENI---VERQELLKKR  106 (265)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            345667777777777887788777777765433 34566777777777777777777766554   4678887753

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=81.00  E-value=12  Score=28.85  Aligned_cols=59  Identities=12%  Similarity=0.322  Sum_probs=45.8

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027611           37 KLSEIKTGLDDADALIRKMDLEARSLQPNV-KAMLLSKLREYKTDLNNLKNEVKRVTSGN   95 (221)
Q Consensus        37 ~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~-r~~~~~k~~~~~~~l~~l~~~~~~~~~~~   95 (221)
                      .+..++.++++....+..|+.|++.++++- -.+++..+..+++++..++..+..++...
T Consensus        87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~  146 (201)
T KOG4603|consen   87 KIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGT  146 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356678888888999999999998877543 35678888888888888888887776543

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=80.75  E-value=63  Score=32.15  Aligned_cols=55  Identities=24%  Similarity=0.276  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcc--hHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 027611            6 EGYERQYCELSAGLSRKCTAASALD--GELKKQKLSEIKTGLDDADALIRKMDLEAR   60 (221)
Q Consensus         6 ~~ye~e~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~   60 (221)
                      ..++.+++...+.|..+-.+.+.+.  -+.+...+..+...+.+.+..+..+..|+.
T Consensus       277 ~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~  333 (1074)
T KOG0250|consen  277 NEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVD  333 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence            4556666666655555444443321  122333344444444444444444444443

>PHA02975 hypothetical protein; Provisional

Probab=80.52  E-value=4.6  Score=26.06  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Q 027611          198 WIMGSIISVLVFAILLILYFKLT  220 (221)
Q Consensus       198 ~il~~ii~~l~~~i~~vl~~k~~  220 (221)
                      +++.+++.++++++++.+|+|..
T Consensus        46 ~~ii~i~~v~~~~~~~flYLK~~   68 (69)
T PHA02975         46 ILIIFIIFITCIAVFTFLYLKLM   68 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            34445666666777778888864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	221
1vcs_A	102	Solution Structure Of Rsgi Ruh-009, An N-Terminal D		6e-08
2nps_C	81	Crystal Structure Of The Early Endosomal Snare Comp		2e-06
1gl2_C	65	Crystal Structure Of An Endosomal Snare Core Comple		1e-05

>pdb|1VCS|A Chain A, Solution Structure Of Rsgi Ruh-009, An N-Terminal Domain Of Vti1a [mus Musculus] Length = 102

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 8  YERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVK 67
          YE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R + P  +
Sbjct: 10 YEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSR 69
Query: 68 AMLLSKLREYKTDLNNLKNEVK--RVTSG 94
           M  +++R YK ++  L+ + K  R+ SG
Sbjct: 70 GMYSNRMRSYKQEMGKLETDFKRSRIASG 98

>pdb|2NPS|C Chain C, Crystal Structure Of The Early Endosomal Snare Complex Length = 81

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 120 RGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNI 179
           R  LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A   L   D N+
Sbjct: 4   RAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANL 63
Query: 180 SKSKKILTAMSRRMSRDK 197
            KS +ILT M RR+ +++
Sbjct: 64  GKSSRILTGMLRRIIQNR 81

>pdb|1GL2|C Chain C, Crystal Structure Of An Endosomal Snare Core Complex Length = 65

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 130 LNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAM 189
           +N +T  I+ S R   ET+++G  I+++L +QR  L    + L   ++N+SKS+KIL +M
Sbjct: 4   MNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSM 63
Query: 190 SR 191
           SR
Sbjct: 64  SR 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
2nps_C	81	Vesicle transport through interaction with T- snar	7e-28
1vcs_A	102	Vesicle transport through interaction with T- snar	8e-28
2qyw_A	102	Vesicle transport through interaction with T-SNAR	3e-23
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	7e-22
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 81

 Score =  100 bits (250), Expect = 7e-28
 Identities = 28/81 (34%), Positives = 47/81 (58%)

Query: 117 ADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVD 176
              R  LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A   L   D
Sbjct: 1   GSMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETD 60

Query: 177 DNISKSKKILTAMSRRMSRDK 197
            N+ KS +ILT M RR+ +++
Sbjct: 61  ANLGKSSRILTGMLRRIIQNR 81

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1 Length = 102

 Score =  100 bits (251), Expect = 8e-28
 Identities = 27/99 (27%), Positives = 52/99 (52%)

Query: 2   SQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARS 61
               EGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R 
Sbjct: 4   GSSGEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVRE 63

Query: 62  LQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAA 100
           + P  + M  +++R YK ++  L+ + KR    +   + 
Sbjct: 64  IPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIASGPSSG 102

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V Length = 102

 Score = 89.0 bits (220), Expect = 3e-23
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 2   SQVFEGYERQYCELSAGLSRKCTAASALDG-ELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           S+ FE     +  L   L           G E KK+ + +      +A+  + +M+ E R
Sbjct: 14  SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELR 73

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVK 89
                 +  ++SKLR Y+ DL  L  EV+
Sbjct: 74  YAPLTFRNPMMSKLRNYRKDLAKLHREVR 102

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65

 Score = 84.0 bits (208), Expect = 7e-22
 Identities = 24/63 (38%), Positives = 40/63 (63%)

Query: 129 RLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTA 188
            +N +T  I+ S R   ET+++G  I+++L +QR  L    + L   ++N+SKS+KIL +
Sbjct: 3   HMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRS 62

Query: 189 MSR 191
           MSR
Sbjct: 63  MSR 65

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C Length = 97

 Score = 50.4 bits (120), Expect = 8e-09
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 4  VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQ 63
          +   YE  +             A +     +   L  ++   D+   L+ +MD+E  +  
Sbjct: 2  LLISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSI 61

Query: 64 --PNVKAMLLSKLREYKTDLNNLKNE 87
             + +A   +KLRE+K  + +    
Sbjct: 62 GDASERATYKAKLREWKKTIQSDIKR 87

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 26/194 (13%), Positives = 59/194 (30%), Gaps = 34/194 (17%)

Query: 19  LSRKCTAASALDGELKKQ-KLSEIKTGLDDADAL--------IRKMDL--EARSLQPNVK 67
            +R       L         L      L   +           R  DL  E  +  P   
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 68  AMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMST 127
           +++   +R+     +N K         +VN      ++ES +    +  A+ R ++    
Sbjct: 331 SIIAESIRDGLATWDNWK---------HVNCDKLTTIIESSLNV--LEPAEYR-KMFDRL 378

Query: 128 ERLNHSTDRIKESRRTML---ETEELGVSILQDLHQQRQSLLHAHN-----TLHGVDDNI 179
                S   I     +++     +   + ++  LH  + SL+         ++  +   +
Sbjct: 379 SVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLH--KYSLVEKQPKESTISIPSIYLEL 435

Query: 180 SKSKKILTAMSRRM 193
               +   A+ R +
Sbjct: 436 KVKLENEYALHRSI 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 3e-07
 Identities = 40/257 (15%), Positives = 70/257 (27%), Gaps = 85/257 (33%)

Query: 33  LKKQKLSEIKTGLDDADALIRKMD-LEAR-----------SLQPNVKAMLLSKLRE---- 76
           L K+++  I    D     +R    L ++            L+ N K  L+S ++     
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQ 104

Query: 77  -------YKTDLNNLKNEVKRVTSGNVN-----QAARDELLE---------SGMAD---- 111
                  Y    + L N+ +     NV+        R  LLE          G+      
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 112 --AMMVSADQR--------------GR------LLMSTERLNHSTD-----RIKESRRTM 144
             A+ V    +                      +L   ++L +  D     R   S    
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 145 LETEEL--GVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRR-----MSRDK 197
           L    +   +  L         LL        V  N+  + K   A +        +R K
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLL--------VLLNVQ-NAKAWNAFNLSCKILLTTRFK 275

Query: 198 WIMGSIISVLVFAILLI 214
            +   + +     I L 
Sbjct: 276 QVTDFLSAATTTHISLD 292

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-06
 Identities = 37/218 (16%), Positives = 67/218 (30%), Gaps = 66/218 (30%)

Query: 55  MDLEARSLQPNVKAMLLSKLREYKTDL--NNLKNEVKRVTSGNVNQAARDELLESGMADA 112
           MD E    Q   K +L      +  +    ++++  K + S    +   D ++ S     
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS----KEEIDHIIMSK---- 58

Query: 113 MMVSADQRGRLLM----------------STERLNHS--TDRIK-ESRRTMLETEE---- 149
               A      L                    R+N+      IK E R+  + T      
Sbjct: 59  ---DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 150 -------------LGVSILQDLHQQRQSLLHAHN----TLHGVD--------DNISKSKK 184
                          VS LQ   + RQ+LL         + GV          ++  S K
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 185 ILTAMSRRMSRDKWI-MGSIISV-LVFAILLILYFKLT 220
           +   M  ++    W+ + +  S   V  +L  L +++ 
Sbjct: 176 VQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQID 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
2qyw_A	102	Vesicle transport through interaction with T-SNAR	99.84
1vcs_A	102	Vesicle transport through interaction with T- snar	99.82
2nps_C	81	Vesicle transport through interaction with T- snar	99.8
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	99.8
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	99.58
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	99.31
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	99.04
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	98.6
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	98.52
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	97.93
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	97.89
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	97.36
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	96.34
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	96.29
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	96.15
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	95.6
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	95.55
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	95.39
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	94.71
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	91.84
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	86.39
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	86.06
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	84.92
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	82.92

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=99.84  E-value=3e-20  Score=130.75  Aligned_cols=89  Identities=25%  Similarity=0.327  Sum_probs=85.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhhhc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 027611            1 MSQVFEGYERQYCELSAGLSRKCTAASAL-DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKT   79 (221)
Q Consensus         1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~   79 (221)
                      ||++|++||++|+.++.+|..++++++.. ++++|+..+.+++..|++|+++|.+|+.|++++|++.|..|..|++.|+.
T Consensus        13 mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~   92 (102)
T 2qyw_A           13 SSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRK   92 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999876 77999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027611           80 DLNNLKNEVK   89 (221)
Q Consensus        80 ~l~~l~~~~~   89 (221)
                      +++.++++|+
T Consensus        93 dL~~lk~elk  102 (102)
T 2qyw_A           93 DLAKLHREVR  102 (102)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHhhcC
Confidence            9999999873

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=99.82  E-value=3.4e-20  Score=130.52  Aligned_cols=94  Identities=29%  Similarity=0.534  Sum_probs=90.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 027611            1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTD   80 (221)
Q Consensus         1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~   80 (221)
                      +|++|++||++|+.++.+|..++.+++..+|++|+..+.+++..|++|+++|.+|++|++++|++.|..|..|++.|+.+
T Consensus         3 sSelFe~YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~d   82 (102)
T 1vcs_A            3 SGSSGEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQE   82 (102)
T ss_dssp             CCCCCCCSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 027611           81 LNNLKNEVKRVTSG   94 (221)
Q Consensus        81 l~~l~~~~~~~~~~   94 (221)
                      ++.++++|+++...
T Consensus        83 L~~lk~elk~~~~~   96 (102)
T 1vcs_A           83 MGKLETDFKRSRIA   96 (102)
T ss_dssp             HHHHHHHTHHHHTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987654

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.80  E-value=6e-20  Score=123.57  Aligned_cols=79  Identities=35%  Similarity=0.593  Sum_probs=75.9

Q ss_pred             HHHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027611          119 QRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDK  197 (221)
Q Consensus       119 ~r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk  197 (221)
                      +|++|+.+++.+++++++|.+|.+++.|||++|.+|+.+|+.|||+|.+++++++++++++++|.++|+.|.||+++||
T Consensus         3 qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK   81 (81)
T 2nps_C            3 MRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR   81 (81)
T ss_dssp             TTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence            6889999999999999999999999999999999999999999999999999999999999999999999999999987

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=99.80  E-value=7.2e-19  Score=122.61  Aligned_cols=91  Identities=18%  Similarity=0.294  Sum_probs=88.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHHH
Q 027611            3 QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSL--QPNVKAMLLSKLREYKTD   80 (221)
Q Consensus         3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~--~~~~r~~~~~k~~~~~~~   80 (221)
                      ++|++||.+|+.++.+|..++++++..+|++|+..+..++..+++|.++|.+|++|++++  |++.|..|+.|++.|+.+
T Consensus         1 ~lF~~YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~d   80 (97)
T 3onj_A            1 SLLISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKT   80 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             HHH-HHHHHHHhhc
Q 027611           81 LNN-LKNEVKRVTS   93 (221)
Q Consensus        81 l~~-l~~~~~~~~~   93 (221)
                      ++. ++++|+++..
T Consensus        81 l~~~lk~~lk~l~d   94 (97)
T 3onj_A           81 IQSDIKRPLQSLVD   94 (97)
T ss_dssp             HHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh
Confidence            999 9999998753

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=99.58  E-value=2.2e-15  Score=97.00  Aligned_cols=64  Identities=38%  Similarity=0.616  Sum_probs=58.3

Q ss_pred             hHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH
Q 027611          128 ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR  191 (221)
Q Consensus       128 ~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r  191 (221)
                      ++|++++++|.+|.+++.|||++|.+|+.+|+.|||+|.+++.+++++++++++|.++|+.|.|
T Consensus         2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R   65 (65)
T 1gl2_C            2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR   65 (65)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence            4688999999999999999999999999999999999999999999999999999999999975

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=99.31  E-value=7.6e-12  Score=83.36  Aligned_cols=67  Identities=13%  Similarity=0.278  Sum_probs=63.9

Q ss_pred             hhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH
Q 027611          125 MSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR  191 (221)
Q Consensus       125 ~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r  191 (221)
                      .++..++++++++.++.+++.||+++|.+|+..|+.|||+|.+++..+++|++++++|.++++.|.+
T Consensus        13 ~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k   79 (79)
T 1n7s_C           13 RADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK   79 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence            5677889999999999999999999999999999999999999999999999999999999999863

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=99.04  E-value=3.9e-10  Score=69.57  Aligned_cols=52  Identities=17%  Similarity=0.387  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHH
Q 027611          138 KESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAM  189 (221)
Q Consensus       138 ~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m  189 (221)
                      .++.+++.|++++|..++..|..|+|+|.++...+++|++++++|.++++.|
T Consensus         3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m   54 (54)
T 1nhl_A            3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL   54 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence            5689999999999999999999999999999999999999999999998764

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=98.60  E-value=2.3e-07  Score=59.93  Aligned_cols=61  Identities=13%  Similarity=0.193  Sum_probs=56.2

Q ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH
Q 027611          131 NHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR  191 (221)
Q Consensus       131 ~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r  191 (221)
                      +.+..+-.++-+++.|++++|..++..|..|.|+|.++...++.++.++..|.+.++.|..
T Consensus         8 ~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~   68 (70)
T 3b5n_C            8 QSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4455677889999999999999999999999999999999999999999999999998864

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=98.52  E-value=5.6e-08  Score=64.88  Aligned_cols=65  Identities=18%  Similarity=0.274  Sum_probs=57.8

Q ss_pred             hhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHH
Q 027611          126 STERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMS  190 (221)
Q Consensus       126 ~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~  190 (221)
                      .....+.+..+..++.+++.+++++|..++..|..|+|+|.++...++.|+.++..|.+.++.|.
T Consensus        18 ~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~   82 (83)
T 1l4a_C           18 CNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34456677788999999999999999999999999999999999999999999999999887764

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=97.93  E-value=0.00016  Score=50.91  Aligned_cols=81  Identities=10%  Similarity=0.086  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 027611          135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTA---MSRRMSRDKWIMGSIISVLVFAI  211 (221)
Q Consensus       135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~---m~rr~~~dk~il~~ii~~l~~~i  211 (221)
                      ..+.+..+.+.|..++-.+...-...|.+.+.++..++..+..++..|++-+++   ..++..+-+|+++++++++++++
T Consensus        21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i~~~i~  100 (109)
T 3hd7_B           21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIII  100 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHHHHHHH
Confidence            446677778888888888988899999999999999999999999999988854   45555555555554444444434


Q ss_pred             HHHH
Q 027611          212 LLIL  215 (221)
Q Consensus       212 ~~vl  215 (221)
                      .+++
T Consensus       101 ~~~~  104 (109)
T 3hd7_B          101 ASTI  104 (109)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            3333

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=97.89  E-value=0.00042  Score=47.05  Aligned_cols=70  Identities=10%  Similarity=0.115  Sum_probs=54.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          133 STDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGS  202 (221)
Q Consensus       133 ~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~  202 (221)
                      +++.|...+..++|+..+-.+-.+.+-+..|+|....++.++....-..=.+.-+.+.|++.-..+=+++
T Consensus         3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~i   72 (91)
T 3hd7_A            3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMI   72 (91)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466888899999999999999999999999999999998888877766666666666666665433333

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=97.36  E-value=0.00027  Score=50.38  Aligned_cols=85  Identities=15%  Similarity=0.214  Sum_probs=64.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          132 HSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAI  211 (221)
Q Consensus       132 ~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i  211 (221)
                      .+.+.|...+..++|+..+-....+.+-...|+|....++..++...-..=.+--+++.|+++-.++-++++++++++++
T Consensus        30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~ii  109 (119)
T 2kog_A           30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII  109 (119)
T ss_dssp             SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466788888899999999999999999999999999999988777776667777788887766666655555544444


Q ss_pred             HHHHH
Q 027611          212 LLILY  216 (221)
Q Consensus       212 ~~vl~  216 (221)
                      +++++
T Consensus       110 i~iIi  114 (119)
T 2kog_A          110 LIIII  114 (119)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            44443

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=96.34  E-value=0.012  Score=37.00  Aligned_cols=62  Identities=11%  Similarity=0.249  Sum_probs=49.8

Q ss_pred             HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHH
Q 027611          129 RLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMS  190 (221)
Q Consensus       129 ~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~  190 (221)
                      .+.+..+.|+.....+....++|.+|-.++..|.+.|..+..+++.+...+..+.+-+..+.
T Consensus         3 ~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~   64 (65)
T 1gl2_D            3 HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVD   64 (65)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34556677888899999999999999999999999999999999999999999987666553

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=96.29  E-value=0.018  Score=38.00  Aligned_cols=66  Identities=12%  Similarity=0.101  Sum_probs=55.5

Q ss_pred             hHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHH
Q 027611          128 ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRM  193 (221)
Q Consensus       128 ~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~  193 (221)
                      ..+.+....|+.....+....++|..|-.+|..|.+-|..+...++.+...|..+++-+..+.++.
T Consensus        12 ~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~   77 (82)
T 2nps_D           12 NMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMT   77 (82)
T ss_dssp             ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            345556677888999999999999999999999999999999999999999999998888887764

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=96.15  E-value=0.062  Score=36.16  Aligned_cols=78  Identities=14%  Similarity=0.221  Sum_probs=48.9

Q ss_pred             hhcchHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          130 LNHSTDRIKESRRTMLETEELG---VSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISV  206 (221)
Q Consensus       130 l~~~~~~L~~s~~~~~ete~~g---~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~  206 (221)
                      +.+....+++.+..+.+..+--   .+-++.|....+.|........      ..|+++=+.|-.+-++=++|+.+++++
T Consensus         7 l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~------~~A~~l~rkmwwkn~K~~iii~~iv~~   80 (91)
T 3hd7_A            7 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE------TSAAKLKRKYWWKNLKMMIILGVICAI   80 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555555554444321   1235567777777766544443      467788889999999999998887777


Q ss_pred             HHHHHHH
Q 027611          207 LVFAILL  213 (221)
Q Consensus       207 l~~~i~~  213 (221)
                      ++++|++
T Consensus        81 il~ii~~   87 (91)
T 3hd7_A           81 ILIIIIV   87 (91)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655543

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.037  Score=34.68  Aligned_cols=54  Identities=11%  Similarity=0.217  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHH
Q 027611          135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTA  188 (221)
Q Consensus       135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~  188 (221)
                      ..|+....++.-...+|..+-.++..|.+.|.++..+++.++..+..+++-+.+
T Consensus        10 ~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~   63 (64)
T 3b5n_D           10 RNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG   63 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            447777888888899999999999999999999999999999999999875553

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=95.55  E-value=0.035  Score=37.06  Aligned_cols=61  Identities=8%  Similarity=0.152  Sum_probs=53.2

Q ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH
Q 027611          131 NHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR  191 (221)
Q Consensus       131 ~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r  191 (221)
                      .+....|+.....+.....+|..+-.+|..|.+.|.++..+++.+...+..+++-++.+.+
T Consensus        25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~   85 (87)
T 1sfc_D           25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG   85 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence            3455668888888999999999999999999999999999999999999999887776543

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=95.39  E-value=0.067  Score=33.61  Aligned_cols=56  Identities=7%  Similarity=0.167  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHH
Q 027611          134 TDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAM  189 (221)
Q Consensus       134 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m  189 (221)
                      ...|+.....+....++|..+-.+|..|.+.|.++..+++.+...+..+++-++.+
T Consensus         9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l   64 (66)
T 1n7s_D            9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM   64 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            45577778888888999999999999999999999999999999999998766543

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=94.71  E-value=0.049  Score=36.35  Aligned_cols=58  Identities=10%  Similarity=0.190  Sum_probs=50.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHH
Q 027611          133 STDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMS  190 (221)
Q Consensus       133 ~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~  190 (221)
                      ....|+.....+.....+|..+-.+|..|.+.|.++..+++.++..+..+++-++.+.
T Consensus        28 qD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll   85 (87)
T 1l4a_D           28 MENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLL   85 (87)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455777788888889999999999999999999999999999999999987776553

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=91.84  E-value=3.2  Score=33.32  Aligned_cols=62  Identities=10%  Similarity=0.094  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHH---HHHHHHHHHHH
Q 027611          137 IKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILT---AMSRRMSRDKW  198 (221)
Q Consensus       137 L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~---~m~rr~~~dk~  198 (221)
                      +.+..+.+.|..++=.+...-...|.+.|.++..++..+...+..|..-+.   ...++..+-||
T Consensus       202 i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~  266 (267)
T 1dn1_B          202 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI  266 (267)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            455555555666666666666779999999999999999888888876665   34444444444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=86.39  E-value=41  Score=36.50  Aligned_cols=100  Identities=13%  Similarity=0.155  Sum_probs=66.5

Q ss_pred             HHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHH--HH
Q 027611          120 RGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSR--DK  197 (221)
Q Consensus       120 r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~--dk  197 (221)
                      |+.+......+..+...|...+..+.+.++-=...-.++..-...-......+..+...+.+|.++|....--..+  ..
T Consensus      2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A         2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence            4445555566777777788888887777765555556666656666777788889999999999999988764322  11


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHh
Q 027611          198 -----WIMGSIISVLVFAILLILYFKL  219 (221)
Q Consensus       198 -----~il~~ii~~l~~~i~~vl~~k~  219 (221)
                           --+-.+++=++++-+||.|+-.
T Consensus      2093 ~~~l~~~~~~L~GD~LLaaafisY~G~ 2119 (3245)
T 3vkg_A         2093 SENFNTQMSTVVGDVVLASAFLAYIGF 2119 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence                 1123345555666667777643

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=86.06  E-value=1.2  Score=31.38  Aligned_cols=83  Identities=14%  Similarity=0.223  Sum_probs=52.3

Q ss_pred             hhHhhcchHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611          127 TERLNHSTDRIKESRRTMLETEELGVS---ILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSI  203 (221)
Q Consensus       127 ~~~l~~~~~~L~~s~~~~~ete~~g~~---i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~i  203 (221)
                      .+.+.+....+++.+..+.+..+--.+   -++.|....+.|...-      ..--..|+++-+.|-.+-++=++|+.++
T Consensus        32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S------~~F~k~A~kl~rkmwwkn~K~~iii~~i  105 (119)
T 2kog_A           32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGA------SQFETSAAKLKRKYWWKNLKMMIILGVI  105 (119)
T ss_dssp             CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSS------HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666777777777776552211   1234555555444332      2233467778888999999999998877


Q ss_pred             HHHHHHHHHHHH
Q 027611          204 ISVLVFAILLIL  215 (221)
Q Consensus       204 i~~l~~~i~~vl  215 (221)
                      +++++++|++++
T Consensus       106 v~iii~iIi~~~  117 (119)
T 2kog_A          106 CAIILIIIIVYF  117 (119)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhe
Confidence            777776666554

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=84.92  E-value=13  Score=29.67  Aligned_cols=55  Identities=13%  Similarity=0.180  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHH
Q 027611          135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAM  189 (221)
Q Consensus       135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m  189 (221)
                      ..|....+.+.|..++=.+...-...|.+.|.++..++..+..++..|..-+..-
T Consensus       217 ~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA  271 (279)
T 2xhe_B          217 KDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQA  271 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466666777777777777777777999999999999999999999998766543

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=82.92  E-value=6.9  Score=24.90  Aligned_cols=56  Identities=7%  Similarity=0.063  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH
Q 027611          136 RIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR  191 (221)
Q Consensus       136 ~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r  191 (221)
                      .+.+..+.+.|..++=.+...-...|.+.|.++..++..+..++..|..-+..=.+
T Consensus        11 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~   66 (77)
T 1jth_B           11 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK   66 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566667777777777777788899999999999999999999999988766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	221
d1vcsa1	89	a.47.2.1 (A:8-96) Vesicle transport v-SNARE protei	1e-27

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.6 bits (246), Expect = 1e-27
 Identities = 27/86 (31%), Positives = 50/86 (58%)

Query: 6  EGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPN 65
          EGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R + P 
Sbjct: 1  EGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQ 60

Query: 66 VKAMLLSKLREYKTDLNNLKNEVKRV 91
           + M  +++R YK ++  L+ + KR 
Sbjct: 61 SRGMYSNRMRSYKQEMGKLETDFKRS 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	99.78

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=5e-19  Score=119.33  Aligned_cols=88  Identities=31%  Similarity=0.595  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q 027611            6 EGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLK   85 (221)
Q Consensus         6 ~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~   85 (221)
                      ++||.+|+.+..+|..++++++..+|++|+..+.+++..+++|.++|.+|++|++++|++.|..|..|++.|+.+++.++
T Consensus         1 E~YE~~y~~l~a~i~~kl~~i~~~~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk   80 (89)
T d1vcsa1           1 EGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLE   80 (89)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 027611           86 NEVKRVTS   93 (221)
Q Consensus        86 ~~~~~~~~   93 (221)
                      ++|++++.
T Consensus        81 ~elk~a~~   88 (89)
T d1vcsa1          81 TDFKRSRI   88 (89)
T ss_dssp             HHTHHHHT
T ss_pred             HHHHhhcc
Confidence            99998753