Citrus Sinensis ID: 027631

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MKTISLVEQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAISS
Secondary Structure (PSIPRED)
ccccccccEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHcccEEEHHccccccEEEEccccccccccccEEcEEEEccccccEEEEEEEccEEEEEEcccccccccccccEEEEEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEEHHcHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccHccEEEEEccccccccccccccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHEEccccccEEEEEEEEccEEEEEccccEEEEcccccEEEEEEEEEEEHHHHccccccccccccccEEEEEEEEccccEEEEEEEcHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MKTISLVEQVMGISicstkypvknspmrflpevpdesggkqivpspangsknayPLLKRIKKADRFAtgvrehvrlgpkITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYlsttagpiagllfistekiafcsersikipspngesarihykvvipvkkikrvnqsenvykpsqkYIEIVtvdnfdfwFMGFLNYQKALNHLQQAISS
Flexible Loop (DISEMBL)
MKTISLVEQVMGisicstkypvknsPMRFLPEVPDesggkqivpspangsknayPLLKRIKKADrfatgvrehvrlgpkiteivkgklslgaRIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSikipspngesarihYKVVipvkkikrvnqsenvykpsqkyIEIVTVDNFDFWFMGFLNYQKALNHLQQAISS
Low Complexity Region (SEG)
MKTISLVEQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYkvvipvkkikrvNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAISS
Disordered region (IsUnstruct)
*****LVEQVMGISICSTKYPV*******************************YPLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIP***GESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHL******
Disordered Region (DISOPRED)
******V**VMGISICSTKYP*******************************************RFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVK******************IEIVTVDNFDFWFMGFLNYQKALNHLQQA***
Disordered Region (DISEMBL)
MKTISLVEQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAISS
Disordered Region (DISPRO)
****SLVEQVMGISICSTKYPV*******************************YPLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAISS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKTISLVEQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAISS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q9FTA0	222	GEM-like protein 4 OS=Ara	yes	no	0.900	0.896	0.609	9e-65
Q9FMW4	219	Putative GEM-like protein	no	no	0.891	0.899	0.601	1e-62
Q9FMW6	218	GEM-like protein 6 OS=Ara	no	no	0.882	0.894	0.575	9e-61
Q9FMW5	210	GEM-like protein 7 OS=Ara	no	no	0.805	0.847	0.579	6e-59
Q9LYV6	272	GEM-like protein 5 OS=Ara	no	no	0.728	0.591	0.397	1e-35
Q9M122	233	GEM-like protein 2 OS=Ara	no	no	0.719	0.682	0.412	2e-35
Q8S8F8	299	GLABRA2 expression modula	no	no	0.710	0.525	0.387	5e-34
Q9SE96	259	GEM-like protein 1 OS=Ara	no	no	0.723	0.617	0.398	1e-33
Q9M063	239	Putative GEM-like protein	no	no	0.547	0.506	0.375	3e-26

>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1

 Score =  246 bits (628), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 125/205 (60%), Positives = 158/205 (77%), Gaps = 6/205 (2%)

Query: 19  KYPV-KNSPMRFLPEVPDESGGKQIVPSPANGSK--NAYPLLKRIKKADRFATGVREHVR 75
           +YP  K +P+ +LP+    S  K  VP+ +  S+  N   +LKR KK D F  GVR+  +
Sbjct: 12  RYPAAKATPVGYLPD--PASFNKFRVPASSKKSEQSNVKSILKR-KKTDGFTNGVRDQSK 68

Query: 76  LGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLL 135
           + PK+TE VK KLSLGARI+QVGG+ K+FK+LF V+EGE+L K  QCYLSTTAGPIAGLL
Sbjct: 69  IRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLL 128

Query: 136 FISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTV 195
           FIS++K+AFCSERSIK+ SP G+  R+HYKV IP+ KI RVNQS+N  KPSQKY+E+VTV
Sbjct: 129 FISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTV 188

Query: 196 DNFDFWFMGFLNYQKALNHLQQAIS 220
           D FDFWFMGFL+YQKA N L++A+S
Sbjct: 189 DGFDFWFMGFLSYQKAFNCLEKALS 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/201 (60%), Positives = 150/201 (74%), Gaps = 4/201 (1%)

Query: 22  VKNSPMRFLPEVPDESGGKQIVPSPANGS--KNAYPLLKRIKKADRFATGVREHVRLGPK 79
           VK SP  +LP+    S  K  +P+ +  S        + R KK D F  GVR+  +LGPK
Sbjct: 16  VKTSPAGYLPD--PASINKLQIPTSSKFSFLTGKGKSMLRKKKNDSFTNGVRDQDKLGPK 73

Query: 80  ITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFIST 139
           +TE VK KLSLGARI+Q+GG+ K++K+LF V++ E+L K  QCYLSTTAGPIAGLLFIS+
Sbjct: 74  LTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISS 133

Query: 140 EKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFD 199
           +KIAFCSERSIK+ SP GE  R+HYKV IP+ KI  VNQS+N  KPSQKY+E+VTVD FD
Sbjct: 134 KKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFD 193

Query: 200 FWFMGFLNYQKALNHLQQAIS 220
           FWFMGFL+YQKA N L+QA+S
Sbjct: 194 FWFMGFLSYQKAFNCLEQALS 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2

 Score =  233 bits (593), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 149/205 (72%), Gaps = 10/205 (4%)

Query: 22  VKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLK-----RIKKADRFATGVREHVRL 76
            K   M +LP+ P      QI  S    SK +Y   K     R KK D F  G R+  +L
Sbjct: 16  AKTDTMSYLPD-PASINNHQIPTS----SKVSYLTGKGKSMLRKKKTDSFTNGARDQDKL 70

Query: 77  GPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLF 136
           GPK+TE VK KLSLGA+I+Q+GG+ K++K+LF V + E+L K  QCYLSTTAGPIAGLLF
Sbjct: 71  GPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLF 130

Query: 137 ISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVD 196
           IS++KIAFCSERSIK+ SP G  +R+HYKV IP+ KI  VNQS+N  KPSQKY+EIVT+D
Sbjct: 131 ISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTID 190

Query: 197 NFDFWFMGFLNYQKALNHLQQAISS 221
           NFDFWFMGF++YQKA N L++A+++
Sbjct: 191 NFDFWFMGFVSYQKAFNCLEKALNN 215

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1

 Score =  227 bits (578), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 106/183 (57%), Positives = 140/183 (76%), Gaps = 5/183 (2%)

Query: 43  VPSPANGSKNAYPLLKRI-----KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQV 97
           +P PA+ +K   P   ++     KK D F  G R+  +LGPK+TE VK KLSLGA+I+Q+
Sbjct: 24  LPDPASINKLQIPTSSKVSMLQKKKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQM 83

Query: 98  GGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNG 157
           GG+ K++K+LF V + E+L K  QCYLSTT G IAGLLFIS++KIAFCSERSIK+ SP G
Sbjct: 84  GGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQG 143

Query: 158 ESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQ 217
           +  R+HYKV IP+ KI  VNQS+N  KPSQ+Y+E+VTVDN+DFWFMGF++YQKA N L++
Sbjct: 144 DLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEK 203

Query: 218 AIS 220
           A++
Sbjct: 204 ALN 206

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 104/161 (64%)

Query: 61  KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
           +KA+  A  +  +++ GP ++E   GK++L A+ I  GG   +F+++F     E L KT 
Sbjct: 102 RKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTF 161

Query: 121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSE 180
            CYLSTT GP+AG +++S  ++AFCS+R +   +P+G+ +  +Y+VV+P+  +  VN   
Sbjct: 162 ACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVV 221

Query: 181 NVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAISS 221
               P +KYI++ TVD  DFWFMGF+NY+KA +HL  ++S 
Sbjct: 222 VKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSD 262

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 108/160 (67%), Gaps = 1/160 (0%)

Query: 61  KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
           +KA+    G+++H++  P I++    +LS G ++I  GG  +VF++ F V   E+LL + 
Sbjct: 65  RKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSF 124

Query: 121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIP-SPNGESARIHYKVVIPVKKIKRVNQS 179
            CY+STT+GP+ G+++IS  +IAFCS+ +I++P S  G     +YKVV+  +KI  ++ S
Sbjct: 125 VCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSS 184

Query: 180 ENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAI 219
            NV KPS++Y+ +VT D F+FWFMGF++Y  A N L +A+
Sbjct: 185 TNVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCLNKAL 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1

 Score =  144 bits (363), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 102/160 (63%), Gaps = 3/160 (1%)

Query: 61  KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
           KK +  A    +H+R  P   +   G+++   ++   GG  K+F++ F     E+LL + 
Sbjct: 134 KKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSF 193

Query: 121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARI-HYKVVIPVKKIKRVNQS 179
            CYLST+AGP+ G+L+IS+ K+A+CS+  +     NG+     +YKVVIP+ ++K VN S
Sbjct: 194 ACYLSTSAGPVMGVLYISSAKLAYCSDNPLSY--KNGDQTEWSYYKVVIPLHQLKAVNPS 251

Query: 180 ENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAI 219
            ++  P++KYI++++VDN +FWFMGFLNY  A+  LQ ++
Sbjct: 252 ASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291

Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 104/163 (63%), Gaps = 3/163 (1%)

Query: 60  IKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKT 119
            KKA+  A    +H++ GP + +    +++ G +I+  GG  KVFK+ F+    E+LLKT
Sbjct: 96  TKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKT 155

Query: 120 CQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARI-HYKVVIPVKKIKRVNQ 178
             CYLST+AGP+ G++++ST K+AF S+  +      GE     +YKVV+P  ++K VN 
Sbjct: 156 YACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSY--KEGEQTLWSYYKVVLPANQLKAVNP 213

Query: 179 SENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAISS 221
           S +    S KYI+++++DN +FWFMGF+ Y+ A+  LQ+A+ S
Sbjct: 214 STSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAVQS 256

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 87/136 (63%), Gaps = 15/136 (11%)

Query: 86  GKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFC 145
           G+++   +++  GG  K+F++ F     E+L  +  CYLST+AGP+ G+L++ST K+A+C
Sbjct: 112 GRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYC 171

Query: 146 SERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGF 205
           S+ S+               VVIP+ ++K VN S +   P++KYI++++VD+ +FWFMGF
Sbjct: 172 SDTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGF 216

Query: 206 LNYQKALNHLQQAISS 221
           LNY+ A+  LQ  + +
Sbjct: 217 LNYEGAVTSLQDTLQA 232

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
255544121	237	conserved hypothetical protein [Ricinus	0.954	0.890	0.653	7e-76
224081322	234	predicted protein [Populus trichocarpa]	0.941	0.888	0.639	1e-73
224093965	234	predicted protein [Populus trichocarpa]	0.941	0.888	0.621	3e-73
449464298	230	PREDICTED: GEM-like protein 4-like [Cucu	0.981	0.943	0.629	3e-72
225463675	218	PREDICTED: GEM-like protein 4 [Vitis vin	0.945	0.958	0.640	6e-72
224148499	224	predicted protein [Populus trichocarpa]	0.914	0.901	0.617	4e-71
224106033	221	predicted protein [Populus trichocarpa]	0.941	0.941	0.619	2e-70
449523782	221	PREDICTED: GEM-like protein 4-like [Cucu	0.950	0.950	0.631	4e-70
224083864	221	predicted protein [Populus trichocarpa]	0.941	0.941	0.619	5e-70
224081318	228	predicted protein [Populus trichocarpa]	0.932	0.903	0.631	2e-69

>gi|255544121|ref|XP_002513123.1| conserved hypothetical protein [Ricinus communis] gi|223548134|gb|EEF49626.1| conserved hypothetical protein [Ricinus communis]

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 147/225 (65%), Positives = 174/225 (77%), Gaps = 14/225 (6%)

Query: 5   SLVEQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGS-----KNAYPLLKR 59
           S+ EQV+GI I S    V+ +P  FL     E+  +  VP+PAN S          +LKR
Sbjct: 4   SIQEQVIGIPITSAASQVQKTPRLFL-----ENTSQSYVPTPANKSLAVKQDKIDSVLKR 58

Query: 60  I----KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGER 115
           +    KKAD+FA G+REHV+LG KITE +KGKLSLGARI+QVGG+ K++++LFNV EGER
Sbjct: 59  MNKLGKKADKFAHGIREHVKLGTKITETLKGKLSLGARILQVGGVKKIYRQLFNVKEGER 118

Query: 116 LLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKR 175
           LLK CQCYLSTTAGPIAGLLFIS++K+AFCSERSIK+ SP G+  RIHYKVVIP+KKIK 
Sbjct: 119 LLKACQCYLSTTAGPIAGLLFISSDKLAFCSERSIKLSSPEGKMVRIHYKVVIPLKKIKI 178

Query: 176 VNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAIS 220
            NQSENV KPSQK+IEIVTVD+FDFWFMGFLNYQKA   LQQA S
Sbjct: 179 ANQSENVKKPSQKFIEIVTVDDFDFWFMGFLNYQKAFRCLQQATS 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081322|ref|XP_002306370.1| predicted protein [Populus trichocarpa] gi|222855819|gb|EEE93366.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/222 (63%), Positives = 170/222 (76%), Gaps = 14/222 (6%)

Query: 8   EQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGS-----KNAYPLLKRI-- 60
           +QV+GI I S  Y V+  P   L     E+  ++ +P+PAN S          LLKR+  
Sbjct: 6   KQVIGIPIRSAAYSVEKMPRLLL-----ENAEQRYIPTPANKSLTCKQNKTDSLLKRMNK 60

Query: 61  --KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLK 118
             KKAD+FA G+REHV+LG +ITE +KGKLSLGARIIQVGG+ KVF++LF V+EGERLLK
Sbjct: 61  LGKKADKFAHGIREHVKLGTRITETLKGKLSLGARIIQVGGVKKVFRQLFGVSEGERLLK 120

Query: 119 TCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQ 178
            CQCYLSTTAGPIAGLLF STEKIAFCSERSIK+ SP G+  RIHYKVVIP++K+K  NQ
Sbjct: 121 VCQCYLSTTAGPIAGLLFTSTEKIAFCSERSIKLSSPEGKLTRIHYKVVIPLRKVKTANQ 180

Query: 179 SENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAIS 220
           SENV KP++KYIEIVTVD+FDFWFMGF + QKA   LQQAI+
Sbjct: 181 SENVKKPTEKYIEIVTVDDFDFWFMGFFSCQKAFKSLQQAIT 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093965|ref|XP_002310054.1| predicted protein [Populus trichocarpa] gi|118489337|gb|ABK96473.1| unknown [Populus trichocarpa x Populus deltoides] gi|222852957|gb|EEE90504.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 138/222 (62%), Positives = 171/222 (77%), Gaps = 14/222 (6%)

Query: 8   EQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGS-----KNAYPLLKRI-- 60
           +QV+GI I +  Y V+  P   L     E+  ++ +PSPAN +          +LKR+  
Sbjct: 6   KQVIGIPIRTASYAVEKMPRLLL-----ENAEQRYIPSPANKALACKQNKIDSMLKRMNK 60

Query: 61  --KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLK 118
             KKAD+FA G+REH+RLG KITE + GKLSLGARI+QVGG+ KVF++LF+V+EGERLL+
Sbjct: 61  LGKKADKFAHGIREHMRLGTKITETLVGKLSLGARILQVGGVKKVFRQLFSVSEGERLLR 120

Query: 119 TCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQ 178
            CQCYLSTTAGPIAGLLFISTEK+AFCSERSIK+ SP G+  RIHYKVV+P++KIK  NQ
Sbjct: 121 VCQCYLSTTAGPIAGLLFISTEKLAFCSERSIKLSSPEGKLVRIHYKVVVPLRKIKTANQ 180

Query: 179 SENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAIS 220
           SEN  KPS+KYIEIVTVD+FDFWFMGF +YQKA   LQQA++
Sbjct: 181 SENAKKPSEKYIEIVTVDDFDFWFMGFFSYQKAFKSLQQAVT 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464298|ref|XP_004149866.1| PREDICTED: GEM-like protein 4-like [Cucumis sativus]

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 143/227 (62%), Positives = 170/227 (74%), Gaps = 10/227 (4%)

Query: 1   MKTISLVEQVMGISICSTKYPVKNSPMRFLPEVPDE---SGGKQIVPSPANGSKNAYPLL 57
           M+T+ L   V+G  I ST   V+ S  R LP++  +   S      P+    SK++  +L
Sbjct: 1   METL-LQRHVIGFPIGSTALQVEQSVQRLLPDLAGQYNISSSDTKYPALKQCSKDS--ML 57

Query: 58  KRI----KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEG 113
            R+    K+AD FA GVREHVRLG KI+E VKGKLSLGARI+QVGG+ K+FK+LFNV +G
Sbjct: 58  SRVNKLGKRADSFAHGVREHVRLGSKISETVKGKLSLGARILQVGGLRKIFKQLFNVGDG 117

Query: 114 ERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKI 173
           E+LLK   CYLSTTAGPIAGLLFIST KIAFCS+RSIK+ SP+GE  R HYKVVIPV KI
Sbjct: 118 EKLLKAVHCYLSTTAGPIAGLLFISTNKIAFCSDRSIKVSSPSGELIRFHYKVVIPVGKI 177

Query: 174 KRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAIS 220
           +R+NQSENV KPSQKY+EIVTVDNFDFWFMGFLNY K L +LQ  IS
Sbjct: 178 ERINQSENVKKPSQKYMEIVTVDNFDFWFMGFLNYHKTLQYLQDVIS 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463675|ref|XP_002275935.1| PREDICTED: GEM-like protein 4 [Vitis vinifera] gi|297742758|emb|CBI35392.3| unnamed protein product [Vitis vinifera]

 Score =  275 bits (704), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 137/214 (64%), Positives = 162/214 (75%), Gaps = 5/214 (2%)

Query: 8   EQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRI-KKADRF 66
           E V+GI + S+ YPV+ S   +  E P     +   PSP +   +    + ++ KKAD F
Sbjct: 7   EHVIGIPVSSSAYPVEGSGKGYFLEPPT----RHQTPSPPDQGDSVTDRMNKLGKKADSF 62

Query: 67  ATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLST 126
             GVREHVRL P I+E VKGKLSLGARI+QVGG+ K+FK+LF V EGE+LLK  QCYLST
Sbjct: 63  VNGVREHVRLAPNISETVKGKLSLGARILQVGGVEKIFKRLFRVREGEKLLKASQCYLST 122

Query: 127 TAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPS 186
           TAGPIAGLLFIST+KIAFCSER+IK  S NGE  RIHYKV+IP++KIK  NQSEN  KPS
Sbjct: 123 TAGPIAGLLFISTDKIAFCSERAIKFSSANGELVRIHYKVLIPLRKIKIANQSENTKKPS 182

Query: 187 QKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAIS 220
           QKYIEIVT DNF+FWFMGFLNYQKA  +LQQA+S
Sbjct: 183 QKYIEIVTTDNFEFWFMGFLNYQKAFKYLQQALS 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224148499|ref|XP_002336664.1| predicted protein [Populus trichocarpa] gi|222836479|gb|EEE74886.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 134/217 (61%), Positives = 168/217 (77%), Gaps = 15/217 (6%)

Query: 8   EQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRI----KKA 63
           +QV+GI I +  Y V+  P   L     E+  ++ +P+  +       +LKR+    KKA
Sbjct: 6   KQVIGIPIRTASYAVEKMPRLLL-----ENAEQRYIPNKIDS------MLKRMNKLGKKA 54

Query: 64  DRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCY 123
           D+FA G+REH+RLG KITE + GKLSLGARI+QVGG+ KVF++LF+V+EGERLL+ CQCY
Sbjct: 55  DKFAHGIREHMRLGTKITETLVGKLSLGARILQVGGVKKVFRQLFSVSEGERLLRVCQCY 114

Query: 124 LSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVY 183
           LSTTAGPIAGLLFISTEK+AFCSERSIK+ SP G+  RIHYKVV+P++KI+  NQSEN  
Sbjct: 115 LSTTAGPIAGLLFISTEKLAFCSERSIKLSSPEGKLVRIHYKVVVPLRKIRTANQSENAK 174

Query: 184 KPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAIS 220
           KPS+KYIEIVTVD+FDFWFMGF +YQKA   LQQAI+
Sbjct: 175 KPSEKYIEIVTVDDFDFWFMGFFSYQKAFKSLQQAIT 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106033|ref|XP_002333733.1| predicted protein [Populus trichocarpa] gi|222838390|gb|EEE76755.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 135/218 (61%), Positives = 166/218 (76%), Gaps = 10/218 (4%)

Query: 8   EQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRI----KKA 63
           +Q +GI I S  Y  + SP+R+LP  PD        P        A  +LK +    KKA
Sbjct: 7   DQALGIPINSAAYTARRSPLRYLPG-PDGQ-----YPQAYFKQCKADSMLKMMNKLGKKA 60

Query: 64  DRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCY 123
           D FA GVREHVRLGPKI+E VKGKLSLGA+I+QVGG+ K+FK+LF V+E E+LLK  QCY
Sbjct: 61  DNFANGVREHVRLGPKISETVKGKLSLGAKILQVGGVEKIFKQLFVVSEDEKLLKASQCY 120

Query: 124 LSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVY 183
           LSTTAGPIAGLLF+STEK+AFCSERSIKI SP+G+S R+HYKV++P+KKIK +NQSENV 
Sbjct: 121 LSTTAGPIAGLLFVSTEKVAFCSERSIKISSPSGKSVRVHYKVLVPLKKIKMLNQSENVK 180

Query: 184 KPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAISS 221
           KPSQKY+E+VTVD+F+FWFMGF+NYQK  N   +  +S
Sbjct: 181 KPSQKYLELVTVDDFEFWFMGFINYQKTFNIFSRQCTS 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523782|ref|XP_004168902.1| PREDICTED: GEM-like protein 4-like [Cucumis sativus]

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 139/220 (63%), Positives = 165/220 (75%), Gaps = 10/220 (4%)

Query: 1   MKTISLVEQVMGISICSTKYPVKNSPMRFLPEVPDE---SGGKQIVPSPANGSKNAYPLL 57
           M+T+ L   V+G  I ST   V+ S  R LP++  +   S      P+    SK++  +L
Sbjct: 1   METL-LQRHVIGFPIGSTALQVEQSVQRLLPDLAGQYNISSSDTKYPALKQCSKDS--ML 57

Query: 58  KRI----KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEG 113
            R+    K+AD FA GVREHVRLG KI+E VKGKLSLGARI+QVGG+ K+FK+LFNV +G
Sbjct: 58  SRVNKLGKRADSFAHGVREHVRLGSKISETVKGKLSLGARILQVGGLRKIFKQLFNVGDG 117

Query: 114 ERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKI 173
           E+LLK   CYLSTTAGPIAGLLFIST KIAFCS+RSIK+ SP+GE  R HYKVVIPV KI
Sbjct: 118 EKLLKAVHCYLSTTAGPIAGLLFISTNKIAFCSDRSIKVSSPSGELIRFHYKVVIPVGKI 177

Query: 174 KRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALN 213
           +R+NQSENV KPSQKY+EIVTVDNFDFWFMGFLNY K  N
Sbjct: 178 ERINQSENVKKPSQKYMEIVTVDNFDFWFMGFLNYHKLFN 217

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083864|ref|XP_002307149.1| predicted protein [Populus trichocarpa] gi|222856598|gb|EEE94145.1| predicted protein [Populus trichocarpa]

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 135/218 (61%), Positives = 165/218 (75%), Gaps = 10/218 (4%)

Query: 8   EQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRI----KKA 63
           +Q +GI I S  Y  + SP+R+LP  PD        P        A  +LK +    KKA
Sbjct: 7   DQALGIPINSAAYTARRSPLRYLPG-PDGQ-----YPQAYFKQCKADSMLKMMNKLGKKA 60

Query: 64  DRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCY 123
           D FA GVREHVRLGPKI+E VKGKLSLGA+I+QVGG+ K+FK+LF V+E E+LLK  QCY
Sbjct: 61  DNFANGVREHVRLGPKISETVKGKLSLGAKILQVGGVEKIFKQLFVVSEDEKLLKASQCY 120

Query: 124 LSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVY 183
           LSTTAGPIAGLLFISTEK+AFCSERSIK  SP+G+S R+HYKV++P+KKIK +NQSENV 
Sbjct: 121 LSTTAGPIAGLLFISTEKVAFCSERSIKFSSPSGKSVRVHYKVLVPLKKIKMLNQSENVK 180

Query: 184 KPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAISS 221
           KPSQKY+E+VTVD+F+FWFMGF+NYQK  N   +  +S
Sbjct: 181 KPSQKYLELVTVDDFEFWFMGFINYQKTFNIFSRQCTS 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081318|ref|XP_002306368.1| predicted protein [Populus trichocarpa] gi|222855817|gb|EEE93364.1| predicted protein [Populus trichocarpa]

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 137/217 (63%), Positives = 169/217 (77%), Gaps = 11/217 (5%)

Query: 8   EQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRI----KKA 63
           +QV+GI I S K+ V+ SP+R+LP  PD     Q  P+     K++  +L+R+    +KA
Sbjct: 7   DQVIGIPINSGKFTVRRSPVRYLPG-PD----GQYPPALKKTKKDS--ILERMNKLGRKA 59

Query: 64  DRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCY 123
           D FA GVREHVRLG KITE VKGKLSLGA+I+Q GG+ K FK LF V+E E+LLK  Q Y
Sbjct: 60  DSFANGVREHVRLGSKITETVKGKLSLGAKILQEGGVEKTFKLLFVVSEDEKLLKVSQSY 119

Query: 124 LSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVY 183
           LSTTAGP+AGLLFIS +K+AFCSERSIK  SPNG+S R+HYKVVIP++KIKRV+QSENV 
Sbjct: 120 LSTTAGPLAGLLFISNQKLAFCSERSIKFSSPNGKSVRVHYKVVIPLRKIKRVSQSENVK 179

Query: 184 KPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAIS 220
           KPSQKY++IVTVD+FDFWFMGF N++K   +LQ AIS
Sbjct: 180 KPSQKYMQIVTVDDFDFWFMGFFNHKKTFKYLQLAIS 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2150823	222	AT5G08350 "AT5G08350" [Arabido	0.900	0.896	0.575	6.8e-56
TAIR|locus:2166806	219	AT5G23370 "AT5G23370" [Arabido	0.895	0.904	0.565	4.3e-54
TAIR|locus:2166791	210	AT5G23360 "AT5G23360" [Arabido	0.873	0.919	0.519	2.8e-50
TAIR|locus:2133387	233	AT4G01600 "AT4G01600" [Arabido	0.719	0.682	0.381	3e-30
TAIR|locus:2183901	272	AT5G13200 "AT5G13200" [Arabido	0.723	0.588	0.375	1.6e-29
TAIR|locus:2032185	259	FIP1 "AT1G28200" [Arabidopsis	0.719	0.613	0.364	1e-27
TAIR|locus:505006267	299	GEM "AT2G22475" [Arabidopsis t	0.719	0.531	0.339	4.5e-27

TAIR|locus:2150823 AT5G08350 "AT5G08350" [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 118/205 (57%), Positives = 150/205 (73%)

Query:    19 KYPV-KNSPMRFLPEVPDESGGKQIVPSPANGSK--NAYPLLKRIKKADRFATGVREHVR 75
             +YP  K +P+ +LP+ P  S  K  VP+ +  S+  N   +LKR KK D F  GVR+  +
Sbjct:    12 RYPAAKATPVGYLPD-P-ASFNKFRVPASSKKSEQSNVKSILKR-KKTDGFTNGVRDQSK 68

Query:    76 LGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLL 135
             + PK+TE VK KLSLGARI+QVGG+ K+FK+LF V+EGE+L K  QCYLSTTAGPIAGLL
Sbjct:    69 IRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLL 128

Query:   136 FISTEKIAFCSERSIKIPSPNGESARIHYXXXXXXXXXXXXNQSENVYKPSQKYIEIVTV 195
             FIS++K+AFCSERSIK+ SP G+  R+HY            NQS+N  KPSQKY+E+VTV
Sbjct:   129 FISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTV 188

Query:   196 DNFDFWFMGFLNYQKALNHLQQAIS 220
             D FDFWFMGFL+YQKA N L++A+S
Sbjct:   189 DGFDFWFMGFLSYQKAFNCLEKALS 213

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2166806 AT5G23370 "AT5G23370" [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 116/205 (56%), Positives = 147/205 (71%)

Query:    20 YP-VKNSPMRFLPEVPDESGGKQIVPSPANGS---KNAYPLLKRIKKADRFATGVREHVR 75
             +P VK SP  +LP+ P  S  K  +P+ +  S        +L++ KK D F  GVR+  +
Sbjct:    13 FPAVKTSPAGYLPD-P-ASINKLQIPTSSKFSFLTGKGKSMLRK-KKNDSFTNGVRDQDK 69

Query:    76 LGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLL 135
             LGPK+TE VK KLSLGARI+Q+GG+ K++K+LF V++ E+L K  QCYLSTTAGPIAGLL
Sbjct:    70 LGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLL 129

Query:   136 FISTEKIAFCSERSIKIPSPNGESARIHYXXXXXXXXXXXXNQSENVYKPSQKYIEIVTV 195
             FIS++KIAFCSERSIK+ SP GE  R+HY            NQS+N  KPSQKY+E+VTV
Sbjct:   130 FISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTV 189

Query:   196 DNFDFWFMGFLNYQKALNHLQQAIS 220
             D FDFWFMGFL+YQKA N L+QA+S
Sbjct:   190 DGFDFWFMGFLSYQKAFNCLEQALS 214

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166791 AT5G23360 "AT5G23360" [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 105/202 (51%), Positives = 144/202 (71%)

Query:    20 YPVKNS-PMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRIKKADRFATGVREHVRLGP 78
             +P  N+ P+ +LP+ P  S  K  +P+ +  S     +L++ KK D F  G R+  +LGP
Sbjct:    13 FPAVNTAPVGYLPD-P-ASINKLQIPTSSKVS-----MLQK-KKTDSFTNGARDQDKLGP 64

Query:    79 KITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFIS 138
             K+TE VK KLSLGA+I+Q+GG+ K++K+LF V + E+L K  QCYLSTT G IAGLLFIS
Sbjct:    65 KLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFIS 124

Query:   139 TEKIAFCSERSIKIPSPNGESARIHYXXXXXXXXXXXXNQSENVYKPSQKYIEIVTVDNF 198
             ++KIAFCSERSIK+ SP G+  R+HY            NQS+N  KPSQ+Y+E+VTVDN+
Sbjct:   125 SKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNY 184

Query:   199 DFWFMGFLNYQKALNHLQQAIS 220
             DFWFMGF++YQKA N L++A++
Sbjct:   185 DFWFMGFVSYQKAFNCLEKALN 206

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2133387 AT4G01600 "AT4G01600" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 61/160 (38%), Positives = 100/160 (62%)

Query:    61 KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
             +KA+    G+++H++  P I++    +LS G ++I  GG  +VF++ F V   E+LL + 
Sbjct:    65 RKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSF 124

Query:   121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSP-NGESARIHYXXXXXXXXXXXXNQS 179
              CY+STT+GP+ G+++IS  +IAFCS+ +I++PS   G     +Y            + S
Sbjct:   125 VCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSS 184

Query:   180 ENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAI 219
              NV KPS++Y+ +VT D F+FWFMGF++Y  A N L +A+
Sbjct:   185 TNVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCLNKAL 224

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2183901 AT5G13200 "AT5G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 60/160 (37%), Positives = 96/160 (60%)

Query:    61 KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
             +KA+  A  +  +++ GP ++E   GK++L A+ I  GG   +F+++F     E L KT 
Sbjct:   102 RKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTF 161

Query:   121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYXXXXXXXXXXXXNQSE 180
              CYLSTT GP+AG +++S  ++AFCS+R +   +P+G+ +  +Y            N   
Sbjct:   162 ACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVV 221

Query:   181 NVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAIS 220
                 P +KYI++ TVD  DFWFMGF+NY+KA +HL  ++S
Sbjct:   222 VKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVS 261

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2032185 FIP1 "AT1G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 59/162 (36%), Positives = 95/162 (58%)

Query:    61 KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
             KKA+  A    +H++ GP + +    +++ G +I+  GG  KVFK+ F+    E+LLKT 
Sbjct:    97 KKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTY 156

Query:   121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESAR-IHYXXXXXXXXXXXXNQS 179
              CYLST+AGP+ G++++ST K+AF S+  +      GE     +Y            N S
Sbjct:   157 ACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKE--GEQTLWSYYKVVLPANQLKAVNPS 214

Query:   180 ENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAISS 221
              +    S KYI+++++DN +FWFMGF+ Y+ A+  LQ+A+ S
Sbjct:   215 TSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAVQS 256

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:505006267 GEM "AT2G22475" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 55/162 (33%), Positives = 93/162 (57%)

Query:    61 KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
             KK +  A    +H+R  P   +   G+++   ++   GG  K+F++ F     E+LL + 
Sbjct:   134 KKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSF 193

Query:   121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESAR-IHYXXXXXXXXXXXXNQS 179
              CYLST+AGP+ G+L+IS+ K+A+CS+  +     NG+     +Y            N S
Sbjct:   194 ACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYK--NGDQTEWSYYKVVIPLHQLKAVNPS 251

Query:   180 ENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAISS 221
              ++  P++KYI++++VDN +FWFMGFLNY  A+  LQ ++ +
Sbjct:   252 ASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSLQA 293


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      221       209   0.00079  112 3  11 22  0.37    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  157 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.41u 0.11s 16.52t   Elapsed:  00:00:01
  Total cpu time:  16.41u 0.11s 16.52t   Elapsed:  00:00:01
  Start:  Sat May 11 02:02:36 2013   End:  Sat May 11 02:02:37 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010482 "regulation of epidermal cell division" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042732 "D-xylose metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FTA0	GEML4_ARATH	No assigned EC number	0.6097	0.9004	0.8963	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V000290 hypothetical protein (234 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
cd13222	127	cd13222, PH-GRAM_GEM, GLABRA 2 expression modulato	2e-90
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	1e-10
pfam02893	60	pfam02893, GRAM, GRAM domain	3e-06
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	0.001

>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  261 bits (670), Expect = 2e-90
 Identities = 82/127 (64%), Positives = 102/127 (80%)

Query: 95  IQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPS 154
           +Q GG+ KVF++ F V  GE+LLK  QCYLSTTAGP+AG LFIST K+AFCS+R +   S
Sbjct: 1   LQEGGVEKVFRQTFGVGPGEKLLKASQCYLSTTAGPVAGTLFISTAKVAFCSDRPLSFTS 60

Query: 155 PNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNH 214
           P+G+  R +YKVVIP++KIK VN SENV  PS+KYI+IVTVD F+FWFMGF+NYQKA  +
Sbjct: 61  PSGQLVRSYYKVVIPLRKIKAVNPSENVKNPSEKYIQIVTVDGFEFWFMGFVNYQKAFKY 120

Query: 215 LQQAISS 221
           LQQA+S 
Sbjct: 121 LQQALSQ 127

GEM interacts with CDT1, a pre-replication complex component that is involved in DNA replication, and with TTG1 (Transparent Testa GLABRA 1), a transcriptional regulator of epidermal cell fate. GEM controls the level of histone H3K9 methylation at the promoters of the GLABRA 2 and CAPRICE (CPC) genes, which are essential for epidermis patterning. GEM also regulates cell division in different root cell types. GEM regulates proliferation-differentiation decisions by integrating DNA replication, cell division and transcriptional controls. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 127

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 54.9 bits (133), Expect = 1e-10
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 12/71 (16%)

Query: 109 NVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVI 168
            + E E+L+    CYLS T GP+ G L+IS  ++ F S    K+            KVVI
Sbjct: 1   KLPEEEKLIADYSCYLSRT-GPVQGRLYISNYRLCFRSNLPGKL-----------TKVVI 48

Query: 169 PVKKIKRVNQS 179
           P+  I R+ +S
Sbjct: 49  PLADITRIEKS 59

Length = 60

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 112 EGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVK 171
             E+L+    CYL     P+ G L+++  ++ F S          G+       +VIP+ 
Sbjct: 3   PEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRS-------DKFGDLT----VLVIPLA 51

Query: 172 KIKRVN 177
            I+RV 
Sbjct: 52  DIERVE 57

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 18/81 (22%)

Query: 104 FKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIH 163
           F+K F + E E+LL     YL     P+ G L+IS     F   RS  +P          
Sbjct: 3   FRKHFALPESEKLLAYYYAYLQRVL-PVYGKLYISDNYFCF---RS-LLPG-------TR 50

Query: 164 YKVVIPVKKIKRVNQSENVYK 184
            K+++P+K I      ENV K
Sbjct: 51  TKMILPLKDI------ENVEK 65

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.36
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.21
PF14470	96	bPH_3: Bacterial PH domain	96.69
KOG4347	671	consensus GTPase-activating protein VRP [General f	85.69
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	81.83

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.36  E-value=5.2e-13  Score=94.42  Aligned_cols=66  Identities=33%  Similarity=0.601  Sum_probs=46.1

Q ss_pred             eeeeccccCcCceeeeccceeeecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceecc
Q 027631          103 VFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQ  178 (221)
Q Consensus       103 vFkq~F~~~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnp  178 (221)
                      -|++.|...++|+|...+.|+|..+.+|+.|.||||+.+++|+|+.+..-.          ++++|||..|..|..
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~----------~~~~ipl~~I~~i~k   67 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT----------CKFVIPLSDIKSIEK   67 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-----------EEEEEGGGEEEEEE
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce----------EEEEEEhHheeEEEE
Confidence            489999999999999999999999999999999999999999998665443          799999999999864

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.21  E-value=1.9e-11  Score=84.55  Aligned_cols=59  Identities=41%  Similarity=0.730  Sum_probs=51.4

Q ss_pred             cCcCceeeeccceeeecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccC
Q 027631          110 VAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQS  179 (221)
Q Consensus       110 ~~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps  179 (221)
                      ..++|+|...|.|+|+ +.+|+.|.||||+.+++|+|+.+-...          .+++|||+.|.+|+..
T Consensus         2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~----------~~~~ipl~~I~~i~k~   60 (61)
T smart00568        2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT----------PKVVIPLADITRIEKS   60 (61)
T ss_pred             cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee----------EEEEEEHHHeeEEEEC
Confidence            4689999999999999 779999999999999999997655432          2999999999998753

>PF14470 bPH_3: Bacterial PH domain

Probab=96.69  E-value=0.03  Score=40.64  Aligned_cols=94  Identities=15%  Similarity=0.165  Sum_probs=67.8

Q ss_pred             CcCceeeeccceeeecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCCCCceE
Q 027631          111 AEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYI  190 (221)
Q Consensus       111 ~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYI  190 (221)
                      .+||+.+-...|.+-...+.-.|+|+++++||-||+-..+.      .    .....||+++|.+|+-....   -...|
T Consensus         2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~------~----~~~~~i~y~~I~~v~~~~g~---~~~~i   68 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG------G----KKFESIPYDDITSVSFKKGI---LGGKI   68 (96)
T ss_pred             cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC------C----ceEEEEEhhheEEEEEEccc---cccEE
Confidence            58999999999988877889999999999999999873221      1    13689999999999997444   34669


Q ss_pred             EEEEecCceeeeeecccHHHHHHHHHHHhh
Q 027631          191 EIVTVDNFDFWFMGFLNYQKALNHLQQAIS  220 (221)
Q Consensus       191 qIvTvD~~eFWFMGFvnY~KA~k~Lq~Ai~  220 (221)
                      .|.| ++..+ =++-+ -..-++-+-+.|+
T Consensus        69 ~i~~-~~~~~-~i~~i-~k~~~~~~~~~i~   95 (96)
T PF14470_consen   69 TIET-NGEKI-KIDNI-QKGDVKEFYEYIK   95 (96)
T ss_pred             EEEE-CCEEE-EEEEc-CHHHHHHHHHHHh
Confidence            9888 44444 44544 3333455555544

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=85.69  E-value=0.85  Score=46.62  Aligned_cols=95  Identities=24%  Similarity=0.346  Sum_probs=73.8

Q ss_pred             eccccCcCceeeeccceeeecCCC--cceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCC
Q 027631          106 KLFNVAEGERLLKTCQCYLSTTAG--PIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVY  183 (221)
Q Consensus       106 q~F~~~~~EkLlKa~~CYLSTtaG--PVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~  183 (221)
                      -.|...  |+|--.-.|=|.|..-  -..|-||+||..++|.||-+=..            .+++||.-|+.|.-.. ..
T Consensus        14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~c------------~~~~Pl~~vr~ve~~~-~s   78 (671)
T KOG4347|consen   14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWLC------------SFITPLLAVRSVERLD-DS   78 (671)
T ss_pred             ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcccc------------eEeeehhhhhhhhccC-cc
Confidence            456665  9999999999999876  58999999999999999976543            7899999999998755 22


Q ss_pred             CCCCceEEEEEecCceeeeeecccHHHHHHHH
Q 027631          184 KPSQKYIEIVTVDNFDFWFMGFLNYQKALNHL  215 (221)
Q Consensus       184 ~P~eKYIqIvTvD~~eFWFMGFvnY~KA~k~L  215 (221)
                      +--..=|-+.|-.+-.|-|-|...=++.+.-+
T Consensus        79 s~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~  110 (671)
T KOG4347|consen   79 SLFTQLISLFTSNMVGMRFGGLTERLKLLSKL  110 (671)
T ss_pred             ccchhhhHHhhcCcceEEecchhhHHHHHHHH
Confidence            22223366778889999999988766666544

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=81.83  E-value=3.2  Score=31.40  Aligned_cols=86  Identities=23%  Similarity=0.352  Sum_probs=53.8

Q ss_pred             eeeeccceeeecCCCcceeeEEeeeceeeeecCCcccccCCCCC----ceeeeEEEEEeccccceeccCCCCCCCCCceE
Q 027631          115 RLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGE----SARIHYKVVIPVKKIKRVNQSENVYKPSQKYI  190 (221)
Q Consensus       115 kLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~----~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYI  190 (221)
                      |++-++.|-+=|..+-+.|+|.|++..+.|..|..-........    ....+--..+|+.+|+.|-..--..+  +-=|
T Consensus         1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr--~~Al   78 (106)
T PF14844_consen    1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLR--DTAL   78 (106)
T ss_dssp             --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTE--EEEE
T ss_pred             CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCc--ceEE
Confidence            34567889999999999999999999999999811111000000    01112234589999999987443332  3448


Q ss_pred             EEEEecCceeee
Q 027631          191 EIVTVDNFDFWF  202 (221)
Q Consensus       191 qIvTvD~~eFWF  202 (221)
                      ||.+.||.-+.|
T Consensus        79 EiF~~dg~s~f~   90 (106)
T PF14844_consen   79 EIFFSDGRSYFF   90 (106)
T ss_dssp             EEEETTS-EEEE
T ss_pred             EEEEcCCcEEEE
Confidence            999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	92.32
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	90.76

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=92.32  E-value=0.6  Score=44.80  Aligned_cols=87  Identities=16%  Similarity=0.196  Sum_probs=55.8

Q ss_pred             cccCcCceeeeccce--eeecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCC
Q 027631          108 FNVAEGERLLKTCQC--YLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKP  185 (221)
Q Consensus       108 F~~~~~EkLlKa~~C--YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P  185 (221)
                      |...|||.++..-.-  |+..-.|++.|+|||++.|+.|.++..        +.   .+.+-|||..|..|.........
T Consensus         7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~--------~~---~~~~~iPL~~I~~vek~~~~s~~   75 (528)
T 1zsq_A            7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFVLDASLGVINRVEKIGGASSR   75 (528)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEEEEEEGGGEEEEEEECCTTCC
T ss_pred             CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC--------Cc---cEEEEeeccceEEEEEcCCCCcC
Confidence            567899999855211  555557999999999999999998521        11   24678999888777653221111


Q ss_pred             C--CceEEEEEecCceeeeeecc
Q 027631          186 S--QKYIEIVTVDNFDFWFMGFL  206 (221)
Q Consensus       186 ~--eKYIqIvTvD~~eFWFMGFv  206 (221)
                      .  --.|+|..-|- ..+=.+|-
T Consensus        76 ~~~~~~l~I~CKDf-r~~~f~f~   97 (528)
T 1zsq_A           76 GENSYGLETVCKDI-RNLRFAHK   97 (528)
T ss_dssp             STTCSEEEEEETTT-EEEEEECC
T ss_pred             CCCCceEEEEccCC-eEEEEEec
Confidence            1  12477776664 44444454

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=90.76  E-value=1  Score=44.45  Aligned_cols=87  Identities=16%  Similarity=0.214  Sum_probs=55.9

Q ss_pred             cccCcCceeeeccc-e-eeecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCC
Q 027631          108 FNVAEGERLLKTCQ-C-YLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKP  185 (221)
Q Consensus       108 F~~~~~EkLlKa~~-C-YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P  185 (221)
                      |...|||.+...-. . |+..-.|++.|+|||++.|+.|.+...        +.   .+.+-|||..|..|.........
T Consensus        79 ~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~--------~~---~~~~~IPL~~I~~Iekv~g~s~~  147 (657)
T 1lw3_A           79 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFVLDASLGVINRVEKIGGASSR  147 (657)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEEEEEEGGGEEEEEEECCTTCC
T ss_pred             CccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC--------Cc---ceEEEecccceEEEEecCCCccc
Confidence            77899999995421 1 444446899999999999999998521        11   24678999888888753321111


Q ss_pred             CC--ceEEEEEecCceeeeeecc
Q 027631          186 SQ--KYIEIVTVDNFDFWFMGFL  206 (221)
Q Consensus       186 ~e--KYIqIvTvD~~eFWFMGFv  206 (221)
                      .+  -.|+|..-|- ..+=.+|-
T Consensus       148 g~~~~~l~I~CKDf-R~~~f~f~  169 (657)
T 1lw3_A          148 GENSYGLETVCKDI-RNLRFAHK  169 (657)
T ss_dssp             STTCSEEEEEETTT-EEEEEECC
T ss_pred             CCCCceEEEEecCC-cEEEEEeC
Confidence            11  2476666654 44444554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	96.82
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	90.22

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0018  Score=48.90  Aligned_cols=82  Identities=18%  Similarity=0.256  Sum_probs=54.0

Q ss_pred             cCcCceeeec--cceeeecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCC--C
Q 027631          110 VAEGERLLKT--CQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYK--P  185 (221)
Q Consensus       110 ~~~~EkLlKa--~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~--P  185 (221)
                      ..|||.+.-.  -.=|+..-.||+-|+|||++-|+.|-++..       ..    .+.+-|||..|..|........  .
T Consensus         5 llpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~-------~~----~~~~~ipl~~I~~v~k~~~~~~~~~   73 (125)
T d1zsqa1           5 LLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER-------DP----PFVLDASLGVINRVEKIGGASSRGE   73 (125)
T ss_dssp             CCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS-------SS----CEEEEEEGGGEEEEEEECCTTCCST
T ss_pred             cCCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCC-------Cc----cEEEEeccceeeeeeecccccccCC
Confidence            3578876532  224566668999999999999999976421       11    1346799999988875333222  2


Q ss_pred             CCceEEEEEecCceeee
Q 027631          186 SQKYIEIVTVDNFDFWF  202 (221)
Q Consensus       186 ~eKYIqIvTvD~~eFWF  202 (221)
                      .--.|+|..-|---+=|
T Consensus        74 ~~~~L~I~CKDfr~~~f   90 (125)
T d1zsqa1          74 NSYGLETVCKDIRNLRF   90 (125)
T ss_dssp             TCSEEEEEETTTEEEEE
T ss_pred             ccccEEEEeccCeEEEE
Confidence            22369999988655544

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.22  E-value=0.66  Score=34.33  Aligned_cols=66  Identities=21%  Similarity=0.228  Sum_probs=48.8

Q ss_pred             ceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCCCCceEEEEEecCceeeeeecccHHH
Q 027631          131 IAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQK  210 (221)
Q Consensus       131 VaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFMGFvnY~K  210 (221)
                      +.|+|||++.+|+|..+.+=.            -.|.+++..|+.-..|-  +..+.-=++||.-|+-.|=|- |.|+.-
T Consensus        20 ~~GtL~l~~d~l~W~p~~~~~------------~~v~~~~~~I~~~q~Sp--e~s~Kv~Lkiv~~~~~s~~F~-Ftn~~~   84 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEGKDR------------FTISHMYADIKCQKISP--EGKAKIQLQLVLHAGDTTNFH-FSNEST   84 (108)
T ss_dssp             CEEEEEECSSEEEEEESSCSS------------CSEEEETTTEEEEEECC--TTCSSEEEEEEETTSCEEEEE-ECCTTT
T ss_pred             CCcEEEEEcCeEEEEcCCCCC------------ceEEEEhhhhhceecCC--CCcccceeEEEEeCCCeEEEE-ECChHH
Confidence            679999999999997653211            25889999998765543  444556699999998887774 788854


Q ss_pred             H
Q 027631          211 A  211 (221)
Q Consensus       211 A  211 (221)
                      |
T Consensus        85 ~   85 (108)
T d2rnrb1          85 A   85 (108)
T ss_dssp             H
T ss_pred             H
Confidence            4