Citrus Sinensis ID: 027645

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MVSLQAPLSPNNGKANKEFDNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFDIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLELNLPCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEGDHDDQQEMVATACMRCHMLVMLCKSSPTCPNCKFLHPPDQSPPKLFKQTFSLLC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccHHHHHHHcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHccccccccccccccccccEEEccccccccccEEEEEEEEcccccccccHHHHccccccEEEEEEcccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccHHHHHHHHccccccccccccccHHcccccccccccEEEEEcHccEEEEEEccccccccccEEEcccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvslqaplspnngkankefdnlsKKRKLEEIIQgegtfdkrsskgvttkssiFDIELqletplplewercldiqsgeIHFYNtrthkktsgdprgspeppnragdhmsldlelnlpcdsqrknqgsnniiskpnsaspprhhlgdhlkkksgdhlsrcpswlafegdhddQQEMVATACMRCHMLVMlckssptcpnckflhppdqsppklfKQTFSLLC
Flexible Loop (DISEMBL)
mvslqaplspnngkankefdnlskkrKLEEIiqgegtfdkrsskgvttkssifdieLQLETPLPLEWERCLDIQSGEIHFYNTrthkktsgdprgspeppNRAGDHMSLDLELNLPCDSQRKNQGSnniiskpnsaspprHHLGDHLKKKSGDHLSRCPSWLAFEGDHDDQQEMVATACMRCHMLVMLCKSSPTCPNCKFlhppdqsppklFKQTFSLLC
Low Complexity Region (SEG)
MVSLQAPLSPNNGKANKEFDNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFDIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLELNLPCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEGDHDDQQEMVATACMRCHMLVMLCKSSPTCPNCKFLHPPDQSPPKLFKQTFSLLC
Disordered region (IsUnstruct)
**************************************************SIFDIELQLETPLPLEWERCLDIQSGEIHFYNT**************************************************************************CPSWLAFEGDHDDQQEMVATACMRCHMLVMLCKSSPTCPNCKFL*******************
Disordered Region (DISOPRED)
**SLQAP***************************************************LETPLPLEWERCLDIQSGEIHFYN********************************************************************************************VATACMRCHMLVMLCKSSPTCPNCKF*************QTFSLLC
Disordered Region (DISEMBL)
MVSLQAPLSPNNGKANKEFDNLSKKRKLEEIIQGEGTF*********TKSSIFDIELQLETPLPLEWERCLDIQSGEIHFYNTRT*****************AGDHMSLDLELNLPCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEGDHDDQQEMVATACMRCHMLVMLCKSSPTCPNCKFLHPPDQSPPKLFKQTFSLLC
Disordered Region (DISPRO)
**************************************D***SKGVTTKSSIFDIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTS***************HMSLDLELNLPC******************************************************QEMVATACMRCHMLVMLCKSSPTCPNCKFLHPPDQSPPKLFKQTFSLLC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSLQAPLSPNNGKANKEFDNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFDIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLELNLPCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEGDHDDQQEMVATACMRCHMLVMLCKSSPTCPNCKFLHPPDQSPPKLFKQTFSLLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
225459312	211	PREDICTED: uncharacterized protein LOC10	0.954	0.995	0.647	6e-67
224084674	211	predicted protein [Populus trichocarpa]	0.936	0.976	0.614	3e-60
224063225	211	predicted protein [Populus trichocarpa]	0.936	0.976	0.598	3e-58
255545710	216	conserved hypothetical protein [Ricinus	0.968	0.986	0.596	2e-56
351721308	215	uncharacterized protein LOC100306574 [Gl	0.95	0.972	0.464	2e-36
449436864	223	PREDICTED: uncharacterized protein LOC10	0.659	0.650	0.535	7e-36
356518477	659	PREDICTED: uncharacterized protein LOC10	0.936	0.312	0.450	4e-35
357489625	213	WW domain containing protein expressed [	0.922	0.953	0.416	8e-35
346466997	231	hypothetical protein [Amblyomma maculatu	0.663	0.632	0.508	4e-32
449469873	208	PREDICTED: uncharacterized protein LOC10	0.763	0.807	0.422	9e-32

>gi|225459312|ref|XP_002284166.1| PREDICTED: uncharacterized protein LOC100262645 [Vitis vinifera] gi|302141953|emb|CBI19156.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (661), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 143/221 (64%), Positives = 167/221 (75%), Gaps = 11/221 (4%)

Query: 1   MVSLQAPLSPNNGK-ANKEFDNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFDIELQL 59
           MVS Q PLSP+  +    EF+NLSKKRK E+   G     K  SK  +TKS IFDIELQL
Sbjct: 1   MVSFQTPLSPDPTRPIVSEFENLSKKRKWEKT--GTEEVFKLQSKAKSTKS-IFDIELQL 57

Query: 60  ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLELNLPCDS 119
           ETPLPLEW+RCLDIQSG+IHFYNTRTHK+TS DPR SPEPP+     MSL+LELNLPCDS
Sbjct: 58  ETPLPLEWQRCLDIQSGQIHFYNTRTHKRTSRDPRASPEPPSPGP--MSLELELNLPCDS 115

Query: 120 QRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEGDHDDQQEMVATAC 179
            R+N+  +N + K NS S P H+  + L+KK+   ++  PSWLAFEGD+   QEMVA  C
Sbjct: 116 LRRNRPDDN-MGKWNSGS-PSHNSKESLQKKNPGGVACSPSWLAFEGDN---QEMVAAVC 170

Query: 180 MRCHMLVMLCKSSPTCPNCKFLHPPDQSPPKLFKQTFSLLC 220
            RCHMLVMLCKSSPTCPNCKF+HPPDQ+PP LFK+ FSLLC
Sbjct: 171 KRCHMLVMLCKSSPTCPNCKFMHPPDQTPPNLFKRRFSLLC 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084674|ref|XP_002307383.1| predicted protein [Populus trichocarpa] gi|222856832|gb|EEE94379.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 134/218 (61%), Positives = 155/218 (71%), Gaps = 12/218 (5%)

Query: 1   MVSLQAPLSPNNGKANKEFDNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFDIELQLE 60
           MVS QA  SPN  K+  E D+ SKKRK EE  Q EG  +KRS K  +TKS   +IEL  E
Sbjct: 1   MVSFQALPSPNGRKSIPELDDSSKKRKWEES-QTEGILEKRS-KPESTKSFFEEIELHRE 58

Query: 61  TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLELNLPCDSQ 120
           TPLPLEW+RCLDIQSG+IHFYNTRTHK+TS DPR +PEPP+    HMSLDLELNLP D  
Sbjct: 59  TPLPLEWQRCLDIQSGQIHFYNTRTHKRTSRDPRKTPEPPS-PDHHMSLDLELNLPYDQS 117

Query: 121 RKNQGSNNIISKPNSASPPRHHLGDHLK-----KKSGDHLSRCPSWLAFEGDHDDQQEMV 175
           ++ + +N+ I+K NS    R   GD  K     K+S   L+R PSWLA E    DQ+EMV
Sbjct: 118 QRKRFANDHITKQNSGGSIR-GFGDLFKDSSRDKESSGGLTRRPSWLASER---DQEEMV 173

Query: 176 ATACMRCHMLVMLCKSSPTCPNCKFLHPPDQSPPKLFK 213
           AT C RCHMLVMLC+SSP CPNCKF+HPPDQS PKLFK
Sbjct: 174 ATVCTRCHMLVMLCRSSPACPNCKFMHPPDQSSPKLFK 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063225|ref|XP_002301050.1| predicted protein [Populus trichocarpa] gi|222842776|gb|EEE80323.1| predicted protein [Populus trichocarpa]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/219 (59%), Positives = 156/219 (71%), Gaps = 13/219 (5%)

Query: 1   MVSLQAPLSPNNGKANKEFDNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFDIELQLE 60
           MVS QA  SPN  K     D+ SKKRK E+  Q EG  +KRS+    ++ S  +IEL LE
Sbjct: 1   MVSFQALPSPNGKKLIPGLDDSSKKRKWEDP-QTEGILEKRSNP--ESRKSFCEIELHLE 57

Query: 61  TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLELNLPCDSQ 120
           TPLPLEW+RCLDIQSG+IHFYNTRTHK+TS DPRGSPEPP+   D MSL+LELNLP D  
Sbjct: 58  TPLPLEWQRCLDIQSGQIHFYNTRTHKRTSRDPRGSPEPPSPDHD-MSLELELNLPYDQS 116

Query: 121 RKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDH-----LSRCPSWLAFEGDHDDQQEMV 175
           ++   +++ I+K N     R   GD  K+ S D+     L+R PSWLAFE    DQQEM+
Sbjct: 117 QRKSYTHDHITKQNPGGSIR-GFGDLFKESSRDNGSSGGLTRRPSWLAFE---KDQQEML 172

Query: 176 ATACMRCHMLVMLCKSSPTCPNCKFLHPPDQSPPKLFKQ 214
           AT C +CHMLVMLC+SSPTCPNCKFLHP +QSPPKLFKQ
Sbjct: 173 ATVCTKCHMLVMLCRSSPTCPNCKFLHPLEQSPPKLFKQ 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545710|ref|XP_002513915.1| conserved hypothetical protein [Ricinus communis] gi|223547001|gb|EEF48498.1| conserved hypothetical protein [Ricinus communis]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/223 (59%), Positives = 153/223 (68%), Gaps = 10/223 (4%)

Query: 1   MVSLQAPLSPNNGKAN--KEFDNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFDIELQ 58
           MVSLQA  +  N +     E DN SKKRK +E  Q  GTF+KRS         IF+IELQ
Sbjct: 1   MVSLQAAATSPNRRETIISEVDNSSKKRKWDEP-QTYGTFEKRSKPPNQNTKPIFEIELQ 59

Query: 59  LETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLELNL-PC 117
           LETPLPLEW++CLDIQSGEIHFYNTRT K+TS DPR SPE    +  HMSLDLEL+L PC
Sbjct: 60  LETPLPLEWQQCLDIQSGEIHFYNTRTKKRTSRDPRRSPE--PPSPGHMSLDLELHLQPC 117

Query: 118 DSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEGDHDDQQEMVAT 177
           +SQRKN  +++ ++                 K S   + RCPSW+  EG   DQ+EMVAT
Sbjct: 118 ESQRKNNANDHSLASSIQGFGDLFMDSSKEDKSSEGTIKRCPSWIV-EG---DQEEMVAT 173

Query: 178 ACMRCHMLVMLCKSSPTCPNCKFLHPPDQSPPKLFKQTFSLLC 220
            C RCHMLVMLCKSSP CPNCKF+HPPDQSPPKLFKQ FSLLC
Sbjct: 174 VCTRCHMLVMLCKSSPACPNCKFMHPPDQSPPKLFKQRFSLLC 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721308|ref|NP_001236949.1| uncharacterized protein LOC100306574 [Glycine max] gi|255628921|gb|ACU14805.1| unknown [Glycine max]

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/226 (46%), Positives = 133/226 (58%), Gaps = 17/226 (7%)

Query: 1   MVSLQAPLSPNNGK--ANKEFDNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFDIELQ 58
           MVS    L+ +  K   + EF+  SKKRK EE +  EG F  +    +  + S+FDIEL 
Sbjct: 1   MVSFHKALAESTPKPEIHAEFEASSKKRKWEEPL-TEGFFKDQ----IEKRKSVFDIELH 55

Query: 59  LETPLPLE-WERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLELNLPC 117
            ETP   + W + L IQSG+I   NTRT   T+ +P+ S E P  +  HMSL+L LNL C
Sbjct: 56  PETPFSSDKWRQYLTIQSGQIQLCNTRT---TTENPKKSSEEPP-SSHHMSLNLGLNLTC 111

Query: 118 DSQRKNQ---GSNNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEGDHDDQQEM 174
           +S RK +   G      K + +SP      + L KK  D     PSWL+     DD +EM
Sbjct: 112 ESPRKKEEGYGYEMNEKKSSGSSPGGLSEREDLCKKDSDGKILSPSWLS--SSEDDYKEM 169

Query: 175 VATACMRCHMLVMLCKSSPTCPNCKFLHPPDQSPPKLFKQTFSLLC 220
           VAT CMRCHMLVMLCKSSP+CPNCKF+HPPDQ+P K  K+  SL C
Sbjct: 170 VATVCMRCHMLVMLCKSSPSCPNCKFMHPPDQNPSKFLKRRCSLFC 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436864|ref|XP_004136212.1| PREDICTED: uncharacterized protein LOC101215652 [Cucumis sativus] gi|449508030|ref|XP_004163197.1| PREDICTED: uncharacterized LOC101215652 [Cucumis sativus]

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 91/170 (53%), Positives = 110/170 (64%), Gaps = 25/170 (14%)

Query: 44  KGVTTKSSIFDIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR-----GSPE 98
           +G    S   +IEL LETPLPLEW+RCLDIQSGEIHF+NT+T K+TS DPR     G   
Sbjct: 9   QGDNFNSPTDNIELHLETPLPLEWQRCLDIQSGEIHFFNTKTQKRTSMDPRRNKLEGPTT 68

Query: 99  PPNR---AGDH--MSLDLELNLPCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGD 153
            PNR   A DH  +SLDLELNL C S++K   +NN  +            G  LK ++ +
Sbjct: 69  TPNRSFHASDHQALSLDLELNLNCQSKKKIMSNNNDDTG-----------GGLLKLQANN 117

Query: 154 HLSRCPSWLAFEGDHDDQQEMVATACMRCHMLVMLCKSSPTCPNCKFLHP 203
           +   CP WL FE    +QQEMVA  CM+CH+LVML KSSPTCPNCKF+HP
Sbjct: 118 YGISCP-WLRFER---EQQEMVARVCMQCHLLVMLLKSSPTCPNCKFIHP 163

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518477|ref|XP_003527905.1| PREDICTED: uncharacterized protein LOC100812227 [Glycine max]

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/231 (45%), Positives = 133/231 (57%), Gaps = 25/231 (10%)

Query: 1   MVSLQAPLSPNNGK--ANKEFDNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFDIELQ 58
           MVS   PL+ +  +   + EF+  SKKRK EE    +  F K     +  + S+FDIE +
Sbjct: 1   MVSFHKPLTESTPRPEIHAEFEASSKKRKWEEPFAED--FFKDHQTSIEKRKSVFDIEPR 58

Query: 59  LETPLPLE-WERCLDIQSGEIHFYNTRTHKKTSGDPRGSPE--PPNRAGDHMSLDLELNL 115
            ETP   + W + L IQSG+I   NTRT   T+ +P  SPE  PP+ +  HMSL+LELNL
Sbjct: 59  PETPFSSDKWRQYLTIQSGQIQLCNTRT---TTENPGRSPELEPPS-SHHHMSLNLELNL 114

Query: 116 PCDSQRKNQ--GSNNIISKPNSASPP------RHHLG----DHLKKKSGDHLSRCPSWLA 163
            C+S RK +     ++  K +S S P      R  L         KK  D     PSWL+
Sbjct: 115 TCESPRKKEEGYGYDMNEKKSSRSSPGGLRELREDLFTDQPSKFNKKDSDGKILSPSWLS 174

Query: 164 FEGDHDDQQEMVATACMRCHMLVMLCKSSPTCPNCKFLHPPDQSPPKLFKQ 214
                DD +EMVAT CMRCHMLVMLCKSSP+CPNCKF+HPPDQ+P K  K+
Sbjct: 175 L--SEDDYKEMVATVCMRCHMLVMLCKSSPSCPNCKFMHPPDQNPSKFLKR 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357489625|ref|XP_003615100.1| WW domain containing protein expressed [Medicago truncatula] gi|355516435|gb|AES98058.1| WW domain containing protein expressed [Medicago truncatula]

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 95/228 (41%), Positives = 131/228 (57%), Gaps = 25/228 (10%)

Query: 1   MVSLQAPLSPNNGK-ANKEFDNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFDIELQL 59
           MVSL   L+ +  K ++ +FD   KKRK EE    +  F K  +  +  + SIFDIEL L
Sbjct: 1   MVSLHKALAMSPKKESSTDFDGPQKKRKWEESPLSDQEFFKDLTHDLGKRKSIFDIELHL 60

Query: 60  ETPLPLE-WERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLELNLPCD 118
           +TPLP + W++ L +QSG+I   NT+ + KT    R  P P   +  H+SLDLELNL C+
Sbjct: 61  KTPLPSDKWQQYLTVQSGQIQLCNTKMNMKTQESKREYPLPEKSSLGHLSLDLELNLTCE 120

Query: 119 SQRKNQGS-----NNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEGDHDDQQE 173
           + +K + S     NN++++  S +             +GD                D +E
Sbjct: 121 TLKKKEESYYEKKNNLVNESISKNKKDSSSWLSSSSSNGD----------------DYKE 164

Query: 174 MVATACMRCHMLVMLCKSSPTCPNCKFLH-PPDQSPPKLFKQT-FSLL 219
           M+AT CM+CHMLVMLCKSSP+CPNCKF+H PPDQ+P K  K+T FS L
Sbjct: 165 MIATVCMKCHMLVMLCKSSPSCPNCKFMHPPPDQNPSKFLKRTRFSFL 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346466997|gb|AEO33343.1| hypothetical protein [Amblyomma maculatum]

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 112/167 (67%), Gaps = 21/167 (12%)

Query: 41  RSSKGVTTKSSIFD-IELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR---GS 96
           +S K    + + F+ IELQ++TPLPLEW+RCLDI+SG+IHFYNTRTHK+TS DPR    +
Sbjct: 57  KSFKSAEARPNSFEHIELQIDTPLPLEWQRCLDIKSGKIHFYNTRTHKRTSKDPRPQNQN 116

Query: 97  PEPPNRAGDHMSLDLELNLPCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDHLS 156
           PEP        SLDLELNL C +++    ++ I +  + +S  R H GD+    S   L 
Sbjct: 117 PEP--------SLDLELNLSCKTEK---STSPIKADDSYSSNSRAHKGDN----SCHDLY 161

Query: 157 RCPSWLAFEGDHDDQQEMVATACMRCHMLVMLCKSSPTCPNCKFLHP 203
           R PS L    +   +QEMVA  CMRCHMLVM+CK+SP+CPNCKF++P
Sbjct: 162 R-PSLLPPPVE-SHRQEMVAGVCMRCHMLVMMCKASPSCPNCKFVYP 206

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449469873|ref|XP_004152643.1| PREDICTED: uncharacterized protein LOC101203360 [Cucumis sativus] gi|449503950|ref|XP_004162236.1| PREDICTED: uncharacterized protein LOC101231684 [Cucumis sativus]

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 113/206 (54%), Gaps = 38/206 (18%)

Query: 20  DNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFDIELQLETPLPLEWERCLDIQSGEIH 79
           DNL+KKRK EE +      +           S+ DIEL LETPLP  W+RCLDIQSG+IH
Sbjct: 24  DNLAKKRKWEESMIPTPPLN-----------SVLDIELHLETPLPFYWQRCLDIQSGKIH 72

Query: 80  FYNTRTHKKTSGDPR---------GSPEPPNRAG-DHMSLDLELNLPCDSQRKNQGSNNI 129
           FYN  T K+T  DPR            E  NR   + MSLDLELNL C+S  KN     +
Sbjct: 73  FYNMTTQKRTWKDPRDKLEKDDDDDDEEDDNRYDKNDMSLDLELNLTCESMEKNNNHQTV 132

Query: 130 ISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEGDHDDQQEMVATACMRCHMLVMLC 189
                     R  + D +     ++         +  +++ + EMVA  CMRCH+LVMLC
Sbjct: 133 -------QGVRRAINDGMMFGLSEN---------YNHNNNKKAEMVAAVCMRCHLLVMLC 176

Query: 190 KSSPTCPNCKFLH-PPDQSPPKLFKQ 214
           KSSP CPNCKF++ PP+Q+ P + K+
Sbjct: 177 KSSPECPNCKFMNSPPEQTSPAMSKR 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2194709	221	AT1G78170 "AT1G78170" [Arabido	0.854	0.850	0.419	3.7e-32
TAIR|locus:2015026	200	AT1G22250 "AT1G22250" [Arabido	0.522	0.575	0.483	2.9e-23
TAIR|locus:2138723	212	AT4G08910 "AT4G08910" [Arabido	0.504	0.523	0.409	8.9e-18
TAIR|locus:2010534	176	AT1G28070 [Arabidopsis thalian	0.345	0.431	0.325	6.2e-05
TAIR|locus:2164235	122	AT5G06270 "AT5G06270" [Arabido	0.372	0.672	0.311	0.00022

TAIR|locus:2194709 AT1G78170 "AT1G78170" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 91/217 (41%), Positives = 115/217 (52%)

Query:    17 KEFDNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFDIELQLETPLPLEWERCLDIQSG 76
             +EF N  KK K E+  Q + T      K  + +S  FD EL L TPLP +W+        
Sbjct:    21 EEFHNSFKKSKQED--QSQSTLFNERPKSESMRSITFDFELHLHTPLPSDWQ-------- 70

Query:    77 EIHFYNTRTHKKTSGDPRGSPEPPNRAGD-HMSLDLELNL-----PCDSQRKNQGSNNII 130
                   T+ + +TS + R  P+ P   G   MSLDLELNL     P  +  K   S++I 
Sbjct:    71 ------TKGYSRTSDEHRAYPKDPVIFGQPKMSLDLELNLSPSGSPSRTTTKKYESSSIH 124

Query:   131 SKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEGDHDDQ-----QEMVATACMRCHML 185
             ++  S+S  +       K   G  LSR PSWLAFEG  D+      QEMV T CM+CHML
Sbjct:   125 NETVSSSKIKVLTNTSKKSIIGTGLSRSPSWLAFEGGDDNDVDHKGQEMVTTVCMKCHML 184

Query:   186 VMLCKSSPTCPNCKFLHPPDQSPPKLFKQT--FSLLC 220
             VMLC S+P CPNCKF+HP D S  KLFK +    LLC
Sbjct:   185 VMLCTSTPVCPNCKFMHPHDHSSTKLFKPSNLLRLLC 221

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015026 AT1G22250 "AT1G22250" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 59/122 (48%), Positives = 72/122 (59%)

Query:   105 DHMSLDLELNLPCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGD-HLSRCPSWLA 163
             DH + DL+LNL   S   +     I+ K   +      +    K +SGD  LSR PSWLA
Sbjct:    80 DHRT-DLDLNLNLYSSSSSSVKKTIMEKDECSKGGTVIISPSKKVRSGDIGLSRSPSWLA 138

Query:   164 FEGDHDD---QQEMVATACMRCHMLVMLCKSSPTCPNCKFLHPPDQSPPKLFK--QTFSL 218
             FEGD DD   +QEM+ T CM+CHMLVMLCKS+  CPNCKF+H  D S  K F+    F L
Sbjct:   139 FEGDDDDNQKKQEMITTVCMKCHMLVMLCKSTLVCPNCKFMHHDDHSSTKQFQTLNLFKL 198

Query:   219 LC 220
             LC
Sbjct:   199 LC 200

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138723 AT4G08910 "AT4G08910" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 52/127 (40%), Positives = 65/127 (51%)

Query:   106 HMSLDLELNLPCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKS--GDHLSRCPSWLA 163
             HMSLDLELNL       N   ++ +S  N            ++K S  G    +  S +A
Sbjct:    86 HMSLDLELNLSPSLIDLNH--HHDLSNYNKGYEEDERKKKMMEKGSVLGLETKKSMSRVA 143

Query:   164 FEGDHD-----------DQQEMVATACMRCHMLVMLCKSSPTCPNCKFLHPP-DQSPPKL 211
             F+ D D            ++EMVA  CM+CHMLVMLCK+SP CPNCKF+H P D S   L
Sbjct:   144 FDLDDDCCDRGDGVGGRSEEEMVARVCMKCHMLVMLCKASPACPNCKFMHSPEDTSLSLL 203

Query:   212 FKQTFSL 218
             F    SL
Sbjct:   204 FTPKPSL 210

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010534 AT1G28070 [Arabidopsis thaliana (taxid:3702)]

 Score = 84 (34.6 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
 Identities = 27/83 (32%), Positives = 40/83 (48%)

Query:    28 LEEIIQGEGTFDKRSSKGVTTKSS-----IFD--IELQLETPLPLEWERCLDIQSGEIHF 80
             LE  +Q     D+RSS G     S     I D  +EL     +P   E+CLD+++GEI++
Sbjct:     8 LERSMQNCSLIDRRSSMGDGFGMSDEHIPISDRFLELSSHFSVPSHLEQCLDLKTGEIYY 67

Query:    81 YNTRTHKKTSGDPRGSPEPPNRA 103
              +  +  +   DPR S    N A
Sbjct:    68 RSWNSGMRVKEDPRKSMSRGNYA 90

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2164235 AT5G06270 "AT5G06270" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 0.00022, P = 0.00022
 Identities = 29/93 (31%), Positives = 42/93 (45%)

Query:   109 LDLELNL--PCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEG 166
             L+L+LNL  P  SQR+   S +  +  +  SPP   +   + +         PS + +  
Sbjct:     8 LELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDE-------PS-VRYST 59

Query:   167 DHDDQQEMVATACMRCHMLVMLCKSSPTCPNCK 199
                +   MV   C RC M VML +  P CP CK
Sbjct:    60 S-PETTSMVLVGCPRCLMYVMLSEDDPKCPKCK 91


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       220   0.00094  112 3  11 22  0.43    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  198 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.74u 0.12s 23.86t   Elapsed:  00:00:01
  Total cpu time:  23.74u 0.12s 23.86t   Elapsed:  00:00:01
  Start:  Sat May 11 02:25:48 2013   End:  Sat May 11 02:25:49 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015238001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (211 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
PF00397	31	WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp	99.07
smart00456	32	WW Domain with 2 conserved Trp (W) residues. Also	98.88
cd00201	31	WW Two conserved tryptophans domain; also known as	98.75
KOG3259	163	consensus Peptidyl-prolyl cis-trans isomerase [Pos	98.32
KOG1891	271	consensus Proline binding protein WW45 [General fu	95.31
COG5104	590	PRP40 Splicing factor [RNA processing and modifica	94.75
KOG3209	984	consensus WW domain-containing protein [General fu	94.23
KOG1891	271	consensus Proline binding protein WW45 [General fu	93.1
KOG0940	358	consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos	90.71
PRK08351	61	DNA-directed RNA polymerase subunit E''; Validated	88.9
smart00391	77	MBD Methyl-CpG binding domain. Methyl-CpG binding	87.01
cd00122	62	MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and	84.85
KOG0940	358	consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos	82.5
PRK06393	64	rpoE DNA-directed RNA polymerase subunit E''; Vali	81.71
COG5104	590	PRP40 Splicing factor [RNA processing and modifica	80.67
cd01397	73	HAT_MBD Methyl-CpG binding domains (MBD) present i	80.1

>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet

Probab=99.07  E-value=1e-10  Score=73.62  Aligned_cols=31  Identities=35%  Similarity=0.624  Sum_probs=29.3

Q ss_pred             CCccceeceecCcccEEEEecCCCcccCCCC
Q 027645           63 LPLEWERCLDIQSGEIHFYNTRTHKKTSGDP   93 (220)
Q Consensus        63 LPsgWEq~LDlqSG~iYY~N~~T~~stw~dP   93 (220)
                      ||.||+.+.|..+|++||+|+.||+++|++|
T Consensus         1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P   31 (31)
T PF00397_consen    1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP   31 (31)
T ss_dssp             SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred             CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence            8999999999668999999999999999987

This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....

>smart00456 WW Domain with 2 conserved Trp (W) residues

Probab=98.88  E-value=1.6e-09  Score=67.10  Aligned_cols=32  Identities=34%  Similarity=0.591  Sum_probs=30.1

Q ss_pred             CCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           63 LPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        63 LPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      ||.||+++.|.+ |++||+|+.|++++|++|+.
T Consensus         1 lp~gW~~~~~~~-g~~yy~n~~t~~s~W~~P~~   32 (32)
T smart00456        1 LPPGWEERKDPD-GRPYYYNHETKETQWEKPRE   32 (32)
T ss_pred             CCCCCEEEECCC-CCEEEEECCCCCEEcCCCCC
Confidence            799999999988 99999999999999999973

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.

>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

Probab=98.75  E-value=8.5e-09  Score=62.91  Aligned_cols=31  Identities=35%  Similarity=0.687  Sum_probs=29.0

Q ss_pred             CccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           64 PLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        64 PsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      |.||+.+.|.. |++||+|+.|++++|++|+.
T Consensus         1 p~~W~~~~~~~-g~~yy~n~~t~~s~W~~P~~   31 (31)
T cd00201           1 PPGWEERWDPD-GRVYYYNHNTKETQWEDPRE   31 (31)
T ss_pred             CCCCEEEECCC-CCEEEEECCCCCEeCCCCCC
Confidence            78999999988 99999999999999999973

>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=2.3e-07  Score=78.59  Aligned_cols=37  Identities=32%  Similarity=0.615  Sum_probs=34.6

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      +..||.+||++.+..+|+.||||+.|++++|+.|...
T Consensus         4 ~~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t   40 (163)
T KOG3259|consen    4 EEKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGT   40 (163)
T ss_pred             cccCCchhheeccccCCCcceeccccchhhccCCCcc
Confidence            3679999999999999999999999999999999875

>KOG1891 consensus Proline binding protein WW45 [General function prediction only]

Probab=95.31  E-value=0.013  Score=53.17  Aligned_cols=37  Identities=16%  Similarity=0.321  Sum_probs=32.3

Q ss_pred             cCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           59 LETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        59 l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      -+.|||.||---.++. ||-||++|++.++-|.+|-+.
T Consensus        90 edlPLPpgWav~~T~~-grkYYIDHn~~tTHW~HPler  126 (271)
T KOG1891|consen   90 EDLPLPPGWAVEFTTE-GRKYYIDHNNRTTHWVHPLER  126 (271)
T ss_pred             ccCCCCCCcceeeEec-CceeEeecCCCcccccChhhh
Confidence            4589999998777764 999999999999999999764

>COG5104 PRP40 Splicing factor [RNA processing and modification]

Probab=94.75  E-value=0.012  Score=57.93  Aligned_cols=32  Identities=34%  Similarity=0.561  Sum_probs=26.8

Q ss_pred             ccceeceecCcccEEEEecCCCcccCCCCCCCC
Q 027645           65 LEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP   97 (220)
Q Consensus        65 sgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~~   97 (220)
                      +.|+.--+ .+|+|||+|..||+++|+.|.+..
T Consensus        15 s~w~e~k~-~dgRiYYYN~~T~kS~weKPkell   46 (590)
T COG5104          15 SEWEELKA-PDGRIYYYNKRTGKSSWEKPKELL   46 (590)
T ss_pred             HHHHHhhC-CCCceEEEecccccccccChHHHh
Confidence            46887666 479999999999999999997653

>KOG3209 consensus WW domain-containing protein [General function prediction only]

Probab=94.23  E-value=0.031  Score=57.65  Aligned_cols=35  Identities=34%  Similarity=0.633  Sum_probs=31.5

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      .|||..||.... ..|++||++|.|+.++|.|||..
T Consensus       221 gplp~nwemayt-e~gevyfiDhntkttswLdprl~  255 (984)
T KOG3209|consen  221 GPLPHNWEMAYT-EQGEVYFIDHNTKTTSWLDPRLT  255 (984)
T ss_pred             CCCCccceEeEe-ecCeeEeeecccccceecChhhh
Confidence            569999999876 46999999999999999999964

>KOG1891 consensus Proline binding protein WW45 [General function prediction only]

Probab=93.10  E-value=0.057  Score=49.20  Aligned_cols=35  Identities=23%  Similarity=0.481  Sum_probs=31.6

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      -.||.||++..|..-| +||+|+.++++++++|+..
T Consensus       127 EgLppGW~rv~s~e~G-tyY~~~~~k~tQy~HPc~~  161 (271)
T KOG1891|consen  127 EGLPPGWKRVFSPEKG-TYYYHEEMKRTQYEHPCIS  161 (271)
T ss_pred             ccCCcchhhccccccc-eeeeecccchhhhcCCCCC
Confidence            5699999999998766 7999999999999999985

>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]

Probab=90.71  E-value=0.1  Score=49.29  Aligned_cols=31  Identities=26%  Similarity=0.396  Sum_probs=28.1

Q ss_pred             cceeceecCcccEEEEecCCCcccCCCCCCCC
Q 027645           66 EWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP   97 (220)
Q Consensus        66 gWEq~LDlqSG~iYY~N~~T~~stw~dPR~~~   97 (220)
                      +|+++.|- +|+.||+|+..++++|-||+++.
T Consensus       117 ~~h~~~~~-~g~r~F~~~i~~ktt~ldd~e~~  147 (358)
T KOG0940|consen  117 GWHMRFTD-TGQRPFYKHILKKTTTLDDREAV  147 (358)
T ss_pred             ceeeEecC-CCceehhhhhhcCccccCchhhc
Confidence            69999874 68999999999999999999973

>PRK08351 DNA-directed RNA polymerase subunit E''; Validated

Probab=88.90  E-value=0.18  Score=37.04  Aligned_cols=25  Identities=32%  Similarity=0.810  Sum_probs=19.4

Q ss_pred             eeeeeCccceeEeEeeCCCCCCCCCCcCC
Q 027645          174 MVATACMRCHMLVMLCKSSPTCPNCKFLH  202 (220)
Q Consensus       174 mv~~gC~~ClmyVM~~k~~p~CP~Ck~~~  202 (220)
                      |..-+|.+|+..+    ....||+|.+..
T Consensus         1 M~~kAC~~C~~i~----~~~~CP~Cgs~~   25 (61)
T PRK08351          1 MTEKACRHCHYIT----TEDRCPVCGSRD   25 (61)
T ss_pred             CchhhhhhCCccc----CCCcCCCCcCCc
Confidence            4556999999877    455899999754

>smart00391 MBD Methyl-CpG binding domain

Probab=87.01  E-value=0.57  Score=35.20  Aligned_cols=28  Identities=25%  Similarity=0.481  Sum_probs=20.5

Q ss_pred             cCCCCCccceeceecC-------cccEEEEecCCCc
Q 027645           59 LETPLPLEWERCLDIQ-------SGEIHFYNTRTHK   87 (220)
Q Consensus        59 l~~pLPsgWEq~LDlq-------SG~iYY~N~~T~~   87 (220)
                      ++.|||.||+..+-+.       .+.|||+.. +|+
T Consensus         4 ~~~Plp~GW~R~~~~r~~g~~~~~~dV~Y~sP-~Gk   38 (77)
T smart00391        4 LRLPLPCGWRRETKQRKSGRSAGKFDVYYISP-CGK   38 (77)
T ss_pred             ccCCCCCCcEEEEEEecCCCCCCcccEEEECC-CCC
Confidence            4578999999988632       478999955 443

Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain

>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD)

Probab=84.85  E-value=1  Score=32.08  Aligned_cols=26  Identities=38%  Similarity=0.816  Sum_probs=20.1

Q ss_pred             cCCCCCccceeceec------CcccEEEEecC
Q 027645           59 LETPLPLEWERCLDI------QSGEIHFYNTR   84 (220)
Q Consensus        59 l~~pLPsgWEq~LDl------qSG~iYY~N~~   84 (220)
                      ++.|||.||+..+-+      ..+.|||+...
T Consensus         2 l~~P~p~GW~R~~~~r~~g~~~k~dv~Y~sP~   33 (62)
T cd00122           2 LRDPLPPGWKRELVIRKSGSAGKGDVYYYSPC   33 (62)
T ss_pred             CCCCCCCCeEEEEEEcCCCCCCcceEEEECCC
Confidence            568999999999875      34578999664

The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.

>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]

Probab=82.50  E-value=1.2  Score=42.31  Aligned_cols=46  Identities=22%  Similarity=0.188  Sum_probs=38.4

Q ss_pred             ccccccccC-CCCCccceeceecCcc--cEEEEecCCC-cccCCCCCCCC
Q 027645           52 IFDIELQLE-TPLPLEWERCLDIQSG--EIHFYNTRTH-KKTSGDPRGSP   97 (220)
Q Consensus        52 i~~iEL~l~-~pLPsgWEq~LDlqSG--~iYY~N~~T~-~stw~dPR~~~   97 (220)
                      .|..|..++ ++||.+|+..|+.+-|  ..||+|+.+. .++|.+|+...
T Consensus        49 ~~~~ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~   98 (358)
T KOG0940|consen   49 EFKGEEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGV   98 (358)
T ss_pred             ecccccccccCCCCcceeeeeccccCCcceeeeeecccccccccCCccCC
Confidence            347777766 8899999999998765  8889999998 59999999873

>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated

Probab=81.71  E-value=0.55  Score=34.94  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=18.9

Q ss_pred             eeeeCccceeEeEeeCCCCCCCCCCcC
Q 027645          175 VATACMRCHMLVMLCKSSPTCPNCKFL  201 (220)
Q Consensus       175 v~~gC~~ClmyVM~~k~~p~CP~Ck~~  201 (220)
                      ...+|.+|+..+    .+..||.|.+-
T Consensus         4 ~~~AC~~C~~i~----~~~~Cp~Cgs~   26 (64)
T PRK06393          4 QYRACKKCKRLT----PEKTCPVHGDE   26 (64)
T ss_pred             hhhhHhhCCccc----CCCcCCCCCCC
Confidence            456899999888    46699999974

>COG5104 PRP40 Splicing factor [RNA processing and modification]

Probab=80.67  E-value=0.76  Score=45.64  Aligned_cols=30  Identities=23%  Similarity=0.568  Sum_probs=26.3

Q ss_pred             cceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           66 EWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        66 gWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      +|..|-+ ..|++||+|..|.++.|.-|-..
T Consensus        57 ~Wke~~T-adGkvyyyN~~TREs~W~iP~e~   86 (590)
T COG5104          57 PWKECRT-ADGKVYYYNSITRESRWKIPPER   86 (590)
T ss_pred             hHHHHhh-cCCceEEecCccccccccCChhh
Confidence            7999976 57999999999999999988653

>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity

Probab=80.10  E-value=1.5  Score=33.23  Aligned_cols=24  Identities=42%  Similarity=0.844  Sum_probs=18.9

Q ss_pred             cCCCCCccceeceec------CcccEEEEe
Q 027645           59 LETPLPLEWERCLDI------QSGEIHFYN   82 (220)
Q Consensus        59 l~~pLPsgWEq~LDl------qSG~iYY~N   82 (220)
                      +..|||.||+..+=+      ..|.|||+-
T Consensus         2 ~r~Pl~~GW~Re~vir~~~~~~~~dV~Y~a   31 (73)
T cd01397           2 LRVPLELGWRRETRIRGLGGRIQGEVAYYA   31 (73)
T ss_pred             ccCCCCCCceeEEEeccCCCCccceEEEEC
Confidence            458999999998855      457899983

The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	99.38
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	99.34
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	99.33
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	99.32
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	99.31
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	99.31
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	99.3
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	99.3
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	99.29
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus}	99.29
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	99.28
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	99.27
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	99.27
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	99.27
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	99.27
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	99.26
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	99.24
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	99.23
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	99.23
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	99.2
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	99.18
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	99.16
1ymz_A	43	CC45; artificial protein, computational design, un	99.16
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	99.06
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	99.04
2ho2_A	38	Fe65 protein, amyloid beta A4 protein-binding fami	99.04
2ysc_A	39	Amyloid beta A4 precursor protein-binding family B	98.97
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	98.95
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	98.89
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	98.87
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	98.87
2jx8_A	52	Hpcif1, phosphorylated CTD-interacting factor 1; p	98.85
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	98.83
2e45_A	55	Fe65 protein, amyloid beta A4 precursor protein-bi	98.82
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	98.7
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	98.53
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	98.53
2ysi_A	40	Transcription elongation regulator 1; Ca150, FBP28	98.48
1e0n_A	27	Hypothetical protein; YJQ8WW domain, WW domain, sa	98.46
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	98.4
1ywi_A	41	Formin-binding protein 3; WW domain, class II, pro	98.38
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	98.37
1e0l_A	37	Formin binding protein; SH3 domain, WW domain, FBP	98.34
2jxw_A	75	WW domain-binding protein 4; WW domain containing	98.3
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	98.18
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	98.13
2jxw_A	75	WW domain-binding protein 4; WW domain containing	98.09
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	97.56
2dk1_A	50	WW domain-binding protein 4; WBP-4, formin- bindin	97.31
2dk7_A	73	Transcription elongation regulator 1; structural g	95.59
2ky8_A	72	Methyl-CPG-binding domain protein 2; DNA binding d	95.26
3c2i_A	97	Methyl-CPG-binding protein 2; water mediated recog	91.91
1ub1_A	133	MECP2, attachment region binding protein; chicken	90.53
1ryq_A	69	DNA-directed RNA polymerase, subunit E''; structur	82.72
3p8b_A	81	DNA-directed RNA polymerase, subunit E''; transcri	82.56

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}

Probab=99.38  E-value=1.8e-13  Score=88.68  Aligned_cols=35  Identities=40%  Similarity=0.695  Sum_probs=32.2

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      ..+||.|||+++| .+|++||+|+.|++++|+|||.
T Consensus         4 ~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttW~~Prl   38 (38)
T 2law_A            4 EGPLPDGWEQAMT-QDGEIYYINHKNKTTSWLDPRL   38 (38)
T ss_dssp             -CCCSSSCCEEEE-TTTEEEEEETTTTEEESSCTTC
T ss_pred             cCCCCCCcEEEEC-CCCCEEEEECCCCCEeCCCCCC
Confidence            3689999999999 7899999999999999999984

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}

Probab=99.34  E-value=6.9e-13  Score=92.50  Aligned_cols=43  Identities=26%  Similarity=0.504  Sum_probs=39.0

Q ss_pred             cCCcccccccccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           46 VTTKSSIFDIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        46 ~~krk~i~~iEL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      .++++.+.       .+||.|||++.| .+|++||+||.|++++|+|||..
T Consensus         2 ~g~~~~~~-------~~LP~GWe~~~~-~~G~~Yyinh~tk~TtwedPr~~   44 (54)
T 1wmv_A            2 SAKRKRVA-------GDLPYGWEQETD-ENGQVFFVDHINKRTTYLDPRLA   44 (54)
T ss_dssp             CCTTCCCS-------SCSCTTEEEEEC-TTSCEEEEESSSCCEESSCTTSS
T ss_pred             CCcccCcC-------CCCCcCcEEEEC-CCCCEEEEeCCCCCEeecCCCCc
Confidence            46777777       799999999999 58999999999999999999986

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}

Probab=99.33  E-value=8.4e-13  Score=90.66  Aligned_cols=42  Identities=26%  Similarity=0.405  Sum_probs=37.7

Q ss_pred             cccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCCC
Q 027645           55 IELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP   97 (220)
Q Consensus        55 iEL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~~   97 (220)
                      -+++.+.+||.|||++.| .+|++||+||.|++++|+|||...
T Consensus         6 ~~~~~~~~LP~GWe~~~d-~~Gr~YYvnh~t~~T~We~P~~~~   47 (49)
T 2zaj_A            6 SGLDSELELPAGWEKIED-PVYGIYYVDHINRKTQYENPSGPS   47 (49)
T ss_dssp             CCCCCSSCCCTTEEEEEE-TTTEEEEEETTTTEEESSCCCSSC
T ss_pred             cccCCCCCCCcCceEEEc-CCCCEEEEeCCCCCEecCCCCCCC
Confidence            456777999999999999 589999999999999999999863

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*

Probab=99.32  E-value=9.8e-13  Score=90.25  Aligned_cols=40  Identities=30%  Similarity=0.485  Sum_probs=36.0

Q ss_pred             ccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           56 ELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        56 EL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      +.+-..+||.|||+++| .+|++||+|+.|++++|+|||..
T Consensus         5 ~~~~~~~LP~gWe~~~~-~~Gr~Yy~nh~t~~T~We~Pr~~   44 (50)
T 1i5h_W            5 DSNDLGPLPPGWEERTH-TDGRVFFINHNIKKTQWEDPRMQ   44 (50)
T ss_dssp             SSSCCSSCSTTEEEEEC-TTSCEEEEETTTTEEESSCTTTS
T ss_pred             CcccCCCCCcCcEEEEc-CCCCEEEEECCCCCEEeeCCCCC
Confidence            34455899999999999 78999999999999999999986

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.31  E-value=1.3e-12  Score=85.47  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=32.8

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      +.+||.|||++.| .+|++||+|+.|++++|+|||.
T Consensus         5 ~~~LP~gWe~~~~-~~Gr~Yy~nh~t~~ttW~~P~~   39 (40)
T 2ysg_A            5 SSGLPYGWEEAYT-ADGIKYFINHVTQTTSWIHPVM   39 (40)
T ss_dssp             SSCCCTTEEEEEC-SSSCEEEEESSSCCEECCCCCC
T ss_pred             cCCCCCCcEEEEc-CCCCEEEEECCCCcCcCCCCCC
Confidence            3689999999999 7899999999999999999985

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.31  E-value=1.1e-12  Score=85.89  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=32.8

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      ..+||.|||++.| .+|++||+|+.|++++|+|||.
T Consensus         5 ~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttw~~Pr~   39 (40)
T 2ysf_A            5 SSGLPEGWEMRFT-VDGIPYFVDHNRRTTTYIDPRT   39 (40)
T ss_dssp             CCCCCSSEEEEEC-TTCCEEEEETTTCCEESSCTTT
T ss_pred             cCCCCcCcEEEEc-CCCCEEEEECCCCcEecCCCCC
Confidence            3789999999999 7899999999999999999985

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}

Probab=99.30  E-value=1.3e-12  Score=88.27  Aligned_cols=37  Identities=32%  Similarity=0.600  Sum_probs=34.2

Q ss_pred             cCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           59 LETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        59 l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      ...+||.|||+++| .+|++||+|+.|++++|+|||..
T Consensus         8 ~~~~LP~gWe~~~~-~~G~~Yyinh~t~~TtWe~Pr~~   44 (46)
T 2l4j_A            8 ASGPLPEGWEQAIT-PEGEIYYINHKNKTTSWLDPRLE   44 (46)
T ss_dssp             TTSCCCTTCEEEEC-TTSCEEEEETTTTEEECSCCSSC
T ss_pred             cCCCCCcCceeEEC-CCCCEEEEECCCCCEeCCCCCcC
Confidence            34789999999999 78999999999999999999975

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}

Probab=99.30  E-value=1.3e-12  Score=83.14  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=31.8

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      .+||.|||++.| .+|++||+|+.|++++|++|+.
T Consensus         3 ~~LP~GWe~~~d-~~G~~Yy~n~~t~~t~We~P~l   36 (36)
T 1wr3_A            3 PPLPPGWEEKVD-NLGRTYYVNHNNRSTQWHRPSL   36 (36)
T ss_dssp             SCSCTTEEEEEC-SSSCEEEEETTTCCEESSCSCC
T ss_pred             CCCCCCCEEEEC-CCCCEEEEECCCCCEeeeCcCC
Confidence            689999999999 5899999999999999999973

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A

Probab=99.29  E-value=1.6e-12  Score=86.31  Aligned_cols=35  Identities=31%  Similarity=0.522  Sum_probs=33.3

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      .+||.|||++.| .+|++||+|+.|++++|+|||..
T Consensus         6 ~~LP~GWe~~~~-~~G~~Yy~nh~t~~ttW~~Pr~~   40 (42)
T 2djy_A            6 GPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDPRLS   40 (42)
T ss_dssp             SCCCSSEEEEEC-SSSCEEEEETTTTEEESSCTTTS
T ss_pred             CCCCcCcEEEEC-CCCCEEEEECCCCCEeCCCCCCC
Confidence            689999999999 78999999999999999999986

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}

Probab=99.29  E-value=1e-12  Score=86.27  Aligned_cols=35  Identities=31%  Similarity=0.497  Sum_probs=32.6

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      +.+||.|||++.| .+|++||+|+.|++++|+|||.
T Consensus         6 ~~~LP~gWe~~~~-~~G~~Yy~n~~t~~t~We~Pr~   40 (41)
T 1wr7_A            6 QSFLPPGWEMRIA-PNGRPFFIDHNTKTTTWEDPRL   40 (41)
T ss_dssp             CCSSCTTEEEEEC-TTSCEEEEETTTTEEESSCGGG
T ss_pred             cCCCCCCcEEEEc-CCCCEEEEECCCCCeecCCCCC
Confidence            4789999999999 5899999999999999999985

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*

Probab=99.28  E-value=1.9e-12  Score=81.81  Aligned_cols=33  Identities=27%  Similarity=0.419  Sum_probs=31.3

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR   94 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR   94 (220)
                      .+||.|||++.|. +|++||+|+.|++++|++|+
T Consensus         3 ~~LP~gWe~~~d~-~g~~Yy~n~~t~~t~W~~P~   35 (36)
T 1wr4_A            3 PGLPSGWEERKDA-KGRTYYVNHNNRTTTWTRPI   35 (36)
T ss_dssp             TTCCTTEEEEECS-SSCEEEEETTTTEEESSCCC
T ss_pred             CCCCCCCEEEECC-CCCEEEEECCCCCEeCcCCC
Confidence            6899999999995 89999999999999999997

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}

Probab=99.27  E-value=2.4e-12  Score=83.44  Aligned_cols=34  Identities=35%  Similarity=0.557  Sum_probs=32.1

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      .+||.|||++.| .+|++||+|+.|++++|++|+.
T Consensus         5 ~~LP~gWe~~~d-~~G~~YY~n~~t~~t~We~P~~   38 (39)
T 2kyk_A            5 GPLPPGWERRVD-NMGRIYYVDHFTRTTTWQRPTL   38 (39)
T ss_dssp             CCCCSSCEEEEC-TTSCEEEECSSSCCEECCCCCC
T ss_pred             CCCCCCcEEEEc-CCCCEEEEECCCCCEeccCCCC
Confidence            689999999999 5999999999999999999985

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}

Probab=99.27  E-value=2.1e-12  Score=87.11  Aligned_cols=36  Identities=31%  Similarity=0.599  Sum_probs=33.6

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      +.+||.|||+++| .+|++||+|+.|++++|+|||..
T Consensus         8 ~~~LP~gWe~~~~-~~Gr~Yyinh~t~~TtW~~Pr~~   43 (46)
T 2ez5_W            8 EEPLPPRWSMQVA-PNGRTFFIDHASRRTTWIDPRNG   43 (46)
T ss_dssp             SCCCCTTEEEEEC-TTSSEEEEETTTTEEESBCTTTC
T ss_pred             CCCCCcCcEEEEc-CCCCEEEEECCCCCEeccCCCCC
Confidence            4789999999999 58999999999999999999986

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A

Probab=99.27  E-value=2.8e-12  Score=89.21  Aligned_cols=39  Identities=38%  Similarity=0.583  Sum_probs=35.4

Q ss_pred             cccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           57 LQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        57 L~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      +....+||.|||+++| .+|++||+||.|++++|+|||..
T Consensus        13 ~~~~~~LP~GWe~~~~-~~Gr~Yyinh~tk~TtW~dPr~~   51 (53)
T 2jmf_A           13 LINEGPLPPGWEIRYT-AAGERFFVDHNTRRTTFEDPRPG   51 (53)
T ss_dssp             TTSCSCCCTTEEEEEC-TTSCEEEEETTTCCEESSCCCSS
T ss_pred             cCcCCCCCcCcEEEEc-CCCCEEEEeCCCCcEecCCCCCC
Confidence            4445899999999999 79999999999999999999975

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1

Probab=99.27  E-value=2.5e-12  Score=81.83  Aligned_cols=35  Identities=34%  Similarity=0.590  Sum_probs=32.6

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      .+||.|||.+.| .+|++||+|+.|++++|++|+..
T Consensus         2 ~~LP~gW~~~~~-~~G~~Yy~n~~t~~t~W~~P~~~   36 (37)
T 1e0m_A            2 MGLPPGWDEYKT-HNGKTYYYNHNTKTSTWTDPRMS   36 (37)
T ss_dssp             CCSCTTEEEEEC-SSCCEEEEETTTTEEESSCTTTC
T ss_pred             CCCCCCcEEEEC-CCCCEEEEECCCCCeeeeCcCCC
Confidence            589999999999 58999999999999999999874

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*

Probab=99.26  E-value=2.5e-12  Score=87.55  Aligned_cols=35  Identities=31%  Similarity=0.412  Sum_probs=32.7

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      .+||.|||.++| .+|++||+|+.|++++|+|||..
T Consensus        11 ~~LP~gWe~~~~-~~G~~Yy~nh~T~~ttWe~Pr~~   45 (49)
T 2kpz_A           11 GFLPKGWEVRHA-PNGRPFFIDHNTKTTTWEDPRLK   45 (49)
T ss_dssp             -CCCTTEEEEEC-TTSCEEEEETTTTEEESSCTTCC
T ss_pred             CCCCCCcEEEEC-CCCCEEEEECCCCCEecCCCCCC
Confidence            789999999999 68999999999999999999986

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=5e-12  Score=83.75  Aligned_cols=35  Identities=26%  Similarity=0.557  Sum_probs=33.1

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      .+||.|||++.|. +|++||+|+.|++++|++|+..
T Consensus         6 ~~LP~GWe~~~d~-~Gr~YY~n~~t~~T~We~P~~~   40 (43)
T 2dmv_A            6 SGLPPGWEQRVDQ-HGRVYYVDHVEKRTTWDRPSGP   40 (43)
T ss_dssp             CSCCTTEEEEECT-TSCEEEEETTTCCEESSCSSSC
T ss_pred             CCCCCCceEEECC-CCCEEEEECCCCCEecCCcCCC
Confidence            6899999999996 8999999999999999999875

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1

Probab=99.23  E-value=6.5e-12  Score=86.01  Aligned_cols=36  Identities=22%  Similarity=0.383  Sum_probs=33.6

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP   97 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~~   97 (220)
                      .+||.|||+++|. +|++||+|+.|++++|+||+...
T Consensus        10 ~~LP~gWe~~~~~-~Gr~Yy~nh~t~~T~W~~P~~~~   45 (49)
T 2ysb_A           10 LPLPPGWSVDWTM-RGRKYYIDHNTNTTHWSHPLESG   45 (49)
T ss_dssp             CCCCTTEEEEECS-SSCEEEEETTTTEEESSCTTTSC
T ss_pred             CCCCCCceEEECC-CCCEEEEEcCCCCEEecCCCCCC
Confidence            6899999999996 89999999999999999999863

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.23  E-value=6.6e-12  Score=88.57  Aligned_cols=44  Identities=27%  Similarity=0.377  Sum_probs=38.3

Q ss_pred             cccccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCCC
Q 027645           53 FDIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP   97 (220)
Q Consensus        53 ~~iEL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~~   97 (220)
                      ...+.+...+||.|||++.| .+|++||+||.|++++|+|||...
T Consensus         5 ~~~~~~~~~~LP~GWe~~~~-~~Gr~Yyinh~tk~TtWe~Pr~~~   48 (57)
T 2ysd_A            5 SSGAEDNLGPLPENWEMAYT-ENGEVYFIDHNTKTTSWLDPRCLN   48 (57)
T ss_dssp             SCCCCSCCCSCCSSEEEEEC-SSCCEEEEETTTTEEESSCTTTCS
T ss_pred             cccCCCCCCCCCcCcEEEEC-CCCCEEEEECCCCcEecCCCCCcc
Confidence            34555667899999999999 489999999999999999999863

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=5.2e-12  Score=90.24  Aligned_cols=42  Identities=24%  Similarity=0.303  Sum_probs=37.5

Q ss_pred             ccccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           54 DIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        54 ~iEL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      ..+.+.+.+||.|||++.| .+|++||+||.|++++|+|||..
T Consensus         5 ~~~~d~~~~LP~GWE~~~d-~~Gr~YYvnh~tk~T~We~P~~~   46 (60)
T 2yse_A            5 SSGLDSELELPAGWEKIED-PVYGIYYVDHINRKTQYENPVLE   46 (60)
T ss_dssp             SCCCCCCSSCCSSEEEEEC-SSSCEEEEETTTTEEESSCHHHH
T ss_pred             ccccCCCCCCCCCcEEEEC-CCCCEEEEeCCCCCeeccCCCch
Confidence            3456777999999999999 68999999999999999999974

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.18  E-value=1.3e-11  Score=80.11  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=32.4

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      +.+||.|||++.|. +|++||+|+.|++++|++|+.
T Consensus         5 ~~~LP~gW~~~~d~-~Gr~YY~n~~T~~t~We~P~~   39 (40)
T 2ysh_A            5 SSGLPPGWQSYLSP-QGRRYYVNTTTNETTWERPSS   39 (40)
T ss_dssp             CSSCCTTCEEEECT-TSCEEEECSSSCCEESSSCCC
T ss_pred             CCCCCCCceEEECC-CCCEEEEECCCCCEeCCCCCC
Confidence            37899999999995 899999999999999999985

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.16  E-value=2.2e-11  Score=83.40  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=33.6

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      ..+||.|||++.|. .|++||+|+.|++++|+||+..
T Consensus        11 ~~~LP~GWe~~~d~-~g~~YYvnh~t~~T~We~P~~~   46 (49)
T 2dwv_A           11 REGLPPGWERVESS-EFGTYYVDHTNKRAQYRHPSGP   46 (49)
T ss_dssp             SSCCCTTEEEEEET-TTEEEEEETTTTEEESSCCCCC
T ss_pred             CCCCCcCcEEEECC-CCCEEEEECCCCCEeccCcCCC
Confidence            37899999999996 7999999999999999999975

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1

Probab=99.16  E-value=2.1e-11  Score=80.31  Aligned_cols=35  Identities=37%  Similarity=0.666  Sum_probs=32.8

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      .+||.||+++.|. +|++||+|+.|++++|++|+..
T Consensus         7 ~~LP~gW~~~~~~-~Gr~YY~n~~T~~t~We~P~~~   41 (43)
T 1ymz_A            7 MPLPPGWERRTDV-EGKVYYFNVRTLTTTWERPTII   41 (43)
T ss_dssp             CCCCSSEEEEECT-TSCEEEEETTTTEEESSCCCSC
T ss_pred             CCCCCCCEEEECC-CCCEEEEECCCCCCcccCCccc
Confidence            6899999999995 8999999999999999999875

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}

Probab=99.06  E-value=8e-11  Score=82.12  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=34.6

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      +.+||.||+.+.|..+|++||+|+.|++++|++|+..
T Consensus         5 ~~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~   41 (54)
T 2jv4_A            5 NTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT   41 (54)
T ss_dssp             CCCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred             CCCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence            4789999999999999999999999999999999875

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*

Probab=99.04  E-value=8.8e-11  Score=78.35  Aligned_cols=40  Identities=35%  Similarity=0.545  Sum_probs=35.8

Q ss_pred             ccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           56 ELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        56 EL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      |+-.+.+||.|||.+.| .+|++||+|+.|++++|+|||..
T Consensus         2 ~~P~~~~LP~GWe~~~~-~~gr~y~~n~~t~~t~W~dPr~~   41 (46)
T 1jmq_A            2 EIPDDVPLPAGWEMAKT-SSGQRYFKNHIDQTTTWQDPRKA   41 (46)
T ss_dssp             CCCSSCCCCTTBCCBCC-SSCCCBEEETTTTEEESSCTTTS
T ss_pred             CCCCCCCCCcCcEEEEc-CCCceEEEEecCCceeecCCCch
Confidence            34455899999999999 78999999999999999999986

>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A

Probab=99.04  E-value=1.1e-10  Score=76.39  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=30.9

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      .+||.|||++.|. .| +||+|+.|++++|++|+..
T Consensus         2 ~~LP~GWe~~~d~-~g-~YY~n~~t~~tqWe~P~~~   35 (38)
T 2ho2_A            2 SDLPAGWMRVQDT-SG-TYYWHIPTGTTQWEPPGRA   35 (38)
T ss_dssp             CCSCTTEEEEECS-SC-EEEEETTTTEEESSCCCC-
T ss_pred             CcCCCCceEEEeC-CC-CEEEecCCCCEeccCCCCC
Confidence            4799999999997 78 9999999999999999874

>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=98.97  E-value=3.8e-10  Score=74.19  Aligned_cols=33  Identities=18%  Similarity=0.409  Sum_probs=30.3

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR   94 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR   94 (220)
                      +.+||.|||++.|.. | .||+|+.|++++|++|+
T Consensus         6 ~~~LP~GWe~~~~~~-G-~YY~n~~t~~tqWe~P~   38 (39)
T 2ysc_A            6 SGGLPPGWRKIHDAA-G-TYYWHVPSGSTQWQRPT   38 (39)
T ss_dssp             CCCCCTTEEEEEETT-E-EEEEESSSCCEESSCCC
T ss_pred             CCCCCCCcEEEEcCC-C-CEEEEcCCCCEeccCCC
Confidence            478999999999986 8 59999999999999996

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=98.95  E-value=3.3e-10  Score=84.56  Aligned_cols=39  Identities=26%  Similarity=0.532  Sum_probs=35.1

Q ss_pred             cccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           57 LQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        57 L~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      -+...+||.|||++.| .+|++||+|+.|++++|++|+..
T Consensus         7 ~~~~~~LP~gWe~~~~-~~Gr~Yy~n~~t~~t~W~~P~~~   45 (88)
T 1tk7_A            7 MDALGPLPDGWEKKIQ-SDNRVYFVNHKNRTTQWEDPRTQ   45 (88)
T ss_dssp             SSTTSSSSSSCCEEEE-TTTEEEEEETTTTEEEEESCCCT
T ss_pred             CCccCCCCCCcEEEEC-CCCCEEEEECCCCCeEeeccccc
Confidence            3445789999999999 68999999999999999999986

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}

Probab=98.89  E-value=9.5e-10  Score=86.90  Aligned_cols=39  Identities=28%  Similarity=0.366  Sum_probs=36.0

Q ss_pred             ccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCCC
Q 027645           58 QLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP   97 (220)
Q Consensus        58 ~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~~   97 (220)
                      +.+.+||.|||.+.|. +|++||+||.|++++|+|||.+.
T Consensus        68 d~~~pLP~GWE~r~d~-~Gr~YfIdH~tktTtW~dPRl~~  106 (109)
T 3l4h_A           68 DTRLELPRGWEIKTDQ-QGKSFFVDHNSRATTFIDPRIPL  106 (109)
T ss_dssp             CTTSCCCTTEEEEECT-TCCEEEEETTTTEEESSCSCCSC
T ss_pred             CCCCCCCCCCeEEECC-CCCEEEEeCCCCCEeeCCCCccc
Confidence            4568999999999998 89999999999999999999874

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=98.87  E-value=9.5e-10  Score=82.06  Aligned_cols=37  Identities=38%  Similarity=0.575  Sum_probs=33.5

Q ss_pred             ccCCCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           58 QLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        58 ~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      ....+||.|||++.| .+|++||+|+.|++++|+|||.
T Consensus        52 ~~~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttw~~Prl   88 (88)
T 1tk7_A           52 INEGPLPPGWEIRYT-AAGERFFVDHNTRRTTFEDPRP   88 (88)
T ss_dssp             HHSCSSCSSCEEEEE-TTTEEEEEETTTTEEESSSSCC
T ss_pred             ccccccCCceEEEEC-CCCCEEEEECCCCcEeCCCCCC
Confidence            345899999999999 6799999999999999999984

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=98.87  E-value=1.4e-09  Score=81.48  Aligned_cols=36  Identities=31%  Similarity=0.481  Sum_probs=33.6

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      ..+||.|||++.| .+|++||+|+.|++++|+|||.+
T Consensus        53 ~~~LP~gWe~~~~-~~G~~Yy~n~~t~~t~w~~Pr~~   88 (90)
T 2kxq_A           53 LGPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDPRLS   88 (90)
T ss_dssp             TCCCCSSCCEEEC-TTSCEEEEETTTTEEESSCTTTS
T ss_pred             ccccCCCceEEEC-CCCCEEEEECCCCcEecCCCCcC
Confidence            3689999999999 68999999999999999999986

>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}

Probab=98.85  E-value=7e-10  Score=76.81  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      ..||.||+.+.|..+|++||+|+.|++++|++|+..
T Consensus         9 ~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~   44 (52)
T 2jx8_A            9 ELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG   44 (52)
T ss_dssp             HHHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred             CCCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence            569999999999999999999999999999999886

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=98.83  E-value=1.9e-09  Score=80.67  Aligned_cols=36  Identities=33%  Similarity=0.448  Sum_probs=33.3

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      +.+||.|||++.| .+|++||+|+.|++++|++|+..
T Consensus         7 ~~~LP~gWe~~~~-~~Gr~YY~n~~t~~t~W~~P~~~   42 (90)
T 2kxq_A            7 PPDLPEGYEQRTT-QQGQVYFLHTQTGVSTWHDPRVP   42 (90)
T ss_dssp             CCSCCSSCEEEEE-TTTEEEEEETTTTEEESSCSSSC
T ss_pred             CCCCCCCcEEEEC-CCCCEEEEECCCCeEeeeccccc
Confidence            4689999999999 48999999999999999999975

>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=98.82  E-value=2.5e-09  Score=75.78  Aligned_cols=39  Identities=23%  Similarity=0.454  Sum_probs=34.6

Q ss_pred             ccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           56 ELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        56 EL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      .++-+.+||.|||+..|. +| +||+|+.|++++|++|...
T Consensus        13 ~~~~~~~LPpGW~~~~D~-sG-tYY~h~~T~tTQWerP~~~   51 (55)
T 2e45_A           13 AFETDSDLPAGWMRVQDT-SG-TYYWHIPTGTTQWEPPGRA   51 (55)
T ss_dssp             TTCSCSCCCTTEEEEEET-TE-EEEEETTTCCEESSCCCCC
T ss_pred             cccCCCCCCCCCeEeecC-CC-CEEEEcCCCCCccCCCCCC
Confidence            355668899999999999 89 9999999999999999653

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=98.70  E-value=5.9e-09  Score=85.74  Aligned_cols=37  Identities=27%  Similarity=0.591  Sum_probs=30.6

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP   97 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~~   97 (220)
                      .+||.|||.+.|..+|++||+|+.|++++|++|+...
T Consensus         8 ~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~~   44 (166)
T 3tc5_A            8 EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNS   44 (166)
T ss_dssp             --CCTTEEEEECTTTCCEEEEETTTCCEESSCC----
T ss_pred             CCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCCc
Confidence            6899999999998899999999999999999999753

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}

Probab=98.53  E-value=3.3e-08  Score=74.31  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=33.3

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      ..+||.||+++.|. +|++||+|+.|++++|++|+..
T Consensus         9 ~~~lp~~W~e~~~~-~Gr~YYyN~~T~~s~We~P~~~   44 (92)
T 2l5f_A            9 ASGAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPDDL   44 (92)
T ss_dssp             TTBTTTTEEEEECT-TSCEEEEETTTTEEESSCSGGG
T ss_pred             CCCCCCCcEEEEcC-CCCEEEEECCCCceecccCccc
Confidence            46799999999998 8999999999999999999875

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1

Probab=98.53  E-value=2.6e-08  Score=71.52  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=31.6

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      ..||.||+.+.| .+|++||+|+.|++++|++|+..
T Consensus        39 ~~lp~gW~~~~~-~~Gr~Yy~n~~t~~t~W~~P~~~   73 (75)
T 1o6w_A           39 LLRENGWKAAKT-ADGKVYYYNPTTRETSWTIPAFE   73 (75)
T ss_dssp             HHHHHTCEEEEC-TTCCEEEEETTTTEEESSCCCCC
T ss_pred             cCCCCeEEEEEC-CCCCEEEEECCCCCEECCCCCCC
Confidence            458999999988 47999999999999999999875

>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1

Probab=98.48  E-value=1e-07  Score=62.61  Aligned_cols=34  Identities=24%  Similarity=0.466  Sum_probs=30.9

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      .|+|.+|+.+.+ ..|++||+|..|++++|+.|.+
T Consensus         6 ~~~~~~W~e~~~-~~G~~YYyN~~T~eS~We~P~~   39 (40)
T 2ysi_A            6 SGTEEIWVENKT-PDGKVYYYNARTRESAWTKPDG   39 (40)
T ss_dssp             CCCCCSEEEEEC-TTSCEEEEETTTCCEESSCCSC
T ss_pred             CCCCCCCEEEEC-CCCCEEEEECCCCCEEeCCCCC
Confidence            789999999885 6899999999999999999864

>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1

Probab=98.46  E-value=8.3e-08  Score=58.63  Aligned_cols=27  Identities=26%  Similarity=0.490  Sum_probs=25.2

Q ss_pred             ccceeceecCcccEEEEecCCCcccCCCC
Q 027645           65 LEWERCLDIQSGEIHFYNTRTHKKTSGDP   93 (220)
Q Consensus        65 sgWEq~LDlqSG~iYY~N~~T~~stw~dP   93 (220)
                      .|||  .|..+|+.||+|..|++++|+.|
T Consensus         1 ~gWe--~~~~~g~~YYyN~~T~~s~We~P   27 (27)
T 1e0n_A            1 PGWE--IIHENGRPLYYNAEQKTKLHYPP   27 (27)
T ss_dssp             CCEE--EEESSSSEEEEETTTTEEESSCC
T ss_pred             CCCe--EECCCCCeEEEECCCCCEeccCC
Confidence            4899  89999999999999999999977

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}

Probab=98.40  E-value=8.9e-08  Score=88.93  Aligned_cols=38  Identities=32%  Similarity=0.499  Sum_probs=34.8

Q ss_pred             cCCCCCccceeceecCcccEEEEecCCCcccCCCCCCCC
Q 027645           59 LETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP   97 (220)
Q Consensus        59 l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~~   97 (220)
                      ...|||.|||++.| .+|++||+||.|.+|+|.|||.+.
T Consensus         5 ~~~~lP~gWe~~~~-~~g~~y~i~h~~~~t~w~~Pr~~~   42 (429)
T 3olm_A            5 QLGPLPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRLPS   42 (429)
T ss_dssp             CCCCCCTTCCCCCS-SCCCCCEEETTTTEEESSCTTSCC
T ss_pred             cCCCCCCCceeEEC-CCCCeEEEeCCCcceeccCCCCCc
Confidence            34799999999999 589999999999999999999874

>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A

Probab=98.38  E-value=1.3e-07  Score=62.19  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=26.6

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR   94 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR   94 (220)
                      .++|.+|+.+.+. .|+.||+|..|++++|+.|.
T Consensus         8 ~~~~~~W~e~~~~-~G~~YYyN~~T~eS~We~P~   40 (41)
T 1ywi_A            8 GSAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPD   40 (41)
T ss_dssp             ----CCEEEEEET-TTEEEEEETTTTEEEESCC-
T ss_pred             CCCCCCcEEEECC-CCCEEEEECCCCCEEeCCCC
Confidence            5678899999986 79999999999999999885

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=98.37  E-value=9.4e-08  Score=84.24  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=32.7

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      ..|||.|||++.+. +|++||+||.|++++|+|||.
T Consensus         9 ~~~l~~~we~~~~~-~~~~y~~~h~~~tt~w~~p~~   43 (261)
T 1eg3_A            9 STSVQGPWERAISP-NKVPYYINHETQTTCWDHPKM   43 (261)
T ss_dssp             HTTCCTTEEEEECT-TSCEEEEETTTTEEESSCHHH
T ss_pred             CCCCCCCcceeECC-CCCeEeecCCcccccCCCCch
Confidence            38999999999985 799999999999999999995

>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A

Probab=98.34  E-value=3.2e-07  Score=59.01  Aligned_cols=33  Identities=27%  Similarity=0.472  Sum_probs=29.3

Q ss_pred             CCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           62 PLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        62 pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      +...+|+.+.+.. |+.||+|..|++++|+.|.+
T Consensus         3 ~~~~~W~e~~~~~-G~~YYyN~~T~es~We~P~~   35 (37)
T 1e0l_A            3 TAVSEWTEYKTAD-GKTYYYNNRTLESTWEKPQE   35 (37)
T ss_dssp             SSSCSCEEEECTT-SCEEEEETTTTEEESSCCSS
T ss_pred             CCCCCeEEEECCC-CCEEEEECCCCCEEecCCCc
Confidence            4566999999875 99999999999999999865

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}

Probab=98.30  E-value=3.8e-07  Score=65.98  Aligned_cols=34  Identities=26%  Similarity=0.386  Sum_probs=31.3

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      .++|.+|+.+.|. .|++||+|+.|++++|++|++
T Consensus        42 ~~~~~~W~~~~~~-~Gr~YyyN~~T~~s~We~P~e   75 (75)
T 2jxw_A           42 TAVKTVWVEGLSE-DGFTYYYNTETGESRWEKPDD   75 (75)
T ss_dssp             SSCCCSEEEEEET-TTEEEEEETTTTEEESSCCCC
T ss_pred             cCCCccEEEEECC-CCCEEEEECcCCCEeccCcCC
Confidence            5789999999997 799999999999999999974

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1

Probab=98.18  E-value=5.6e-07  Score=64.49  Aligned_cols=31  Identities=39%  Similarity=0.581  Sum_probs=28.5

Q ss_pred             ccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           65 LEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        65 sgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      +||+++.|. +|++||+|+.|++++|++|+..
T Consensus         2 ~~W~~~~~~-~Gr~YY~n~~T~~s~W~~P~~~   32 (75)
T 1o6w_A            2 SIWKEAKDA-SGRIYYYNTLTKKSTWEKPKEL   32 (75)
T ss_dssp             CCEEEEECT-TCCEEEEETTTTEEESSCCHHH
T ss_pred             CCCeEEECC-CCCeEEEECCCCCEEeecchhh
Confidence            489999997 8999999999999999999864

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}

Probab=98.13  E-value=6.5e-07  Score=67.25  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=30.7

Q ss_pred             CCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           62 PLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        62 pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      +||.+|+.+.+. +|++||+|+.|++++|++|+..
T Consensus        52 ~~~~~W~~~~~~-~Gr~Yy~N~~T~~s~We~P~~~   85 (92)
T 2l5f_A           52 LSKCPWKEYKSD-SGKTYYYNSQTKESRWAKPKEL   85 (92)
T ss_dssp             HHSCSEEEEECT-TCCEEEEETTTTEEESCCCHHH
T ss_pred             ccccceEEEECC-CCCEEEEECCCCCeeccCchhH
Confidence            578999999874 8999999999999999999864

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}

Probab=98.09  E-value=1.6e-06  Score=62.61  Aligned_cols=31  Identities=16%  Similarity=0.306  Sum_probs=28.5

Q ss_pred             ccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           65 LEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        65 sgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      .+|+++.|.. |++||+|+.|++++|++|+..
T Consensus         5 ~~W~e~~~~~-G~~YYyN~~T~~s~We~P~~~   35 (75)
T 2jxw_A            5 GRWVEGITSE-GYHYYYDLISGASQWEKPEGF   35 (75)
T ss_dssp             CCEEEEEETT-TEEEEEETTTTEEECSCCSSC
T ss_pred             CCcEEEECCC-CCEEEEECCCCCEeecCCCcc
Confidence            4899999985 999999999999999999875

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}

Probab=97.56  E-value=4.9e-05  Score=62.19  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=32.9

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      ..||.|||.+++..+|+.||+|..|...+|+.|..
T Consensus         6 ~~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~   40 (177)
T 1yw5_A            6 TGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG   40 (177)
T ss_dssp             CCCCTTEEEEECSSTTCEEEEETTTCCEESSCCTT
T ss_pred             CCCCchHHHHhcccCCchhhhhHHHhhHhhcCccc
Confidence            66999999999999999999999999999998865

>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=97.31  E-value=0.0002  Score=49.22  Aligned_cols=30  Identities=17%  Similarity=0.348  Sum_probs=26.8

Q ss_pred             cceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           66 EWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        66 gWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      .|..+.+. .|+.||+|..|++++|+.|...
T Consensus         8 ~W~e~~s~-~G~~YYyN~~T~eS~WekP~~~   37 (50)
T 2dk1_A            8 RWVEGITS-EGYHYYYDLISGASQWEKPEGF   37 (50)
T ss_dssp             CEEECCCS-TTCCCEEESSSCCEESSCCTTC
T ss_pred             CeEEEECC-CCCEEEEECCCCCEEeeCChhh
Confidence            69999887 5999999999999999988654

>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.59  E-value=0.0086  Score=44.40  Aligned_cols=34  Identities=24%  Similarity=0.437  Sum_probs=27.6

Q ss_pred             CCCc-cceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           62 PLPL-EWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        62 pLPs-gWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      ++|- .|...-. ..||+||+|..|+.++|+.|.+.
T Consensus        16 pipgt~W~~v~T-~dGR~fyyN~~Tk~S~WekP~eL   50 (73)
T 2dk7_A           16 PIPGTPWCVVWT-GDERVFFYNPTTRLSMWDRPDDL   50 (73)
T ss_dssp             ECSSSSCEEEEE-SSSCEEEEETTTTEECSSCCTTT
T ss_pred             CCCCCCcEEEEC-CCCCEEEecCcccceeccCChHh
Confidence            4443 6977654 57999999999999999998876

>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}

Probab=95.26  E-value=0.0061  Score=44.45  Aligned_cols=27  Identities=30%  Similarity=0.666  Sum_probs=19.9

Q ss_pred             CCCCccceeceec-Ccc------cEEEEecCCCcc
Q 027645           61 TPLPLEWERCLDI-QSG------EIHFYNTRTHKK   88 (220)
Q Consensus        61 ~pLPsgWEq~LDl-qSG------~iYY~N~~T~~s   88 (220)
                      .+||.||+..+-+ ++|      .|||+.. +|++
T Consensus        11 p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP-~Gkr   44 (72)
T 2ky8_A           11 PALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKK   44 (72)
T ss_dssp             SSSCTTCEEEEEECCSSTTTTCEEEEEECT-TCCE
T ss_pred             CCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCE
Confidence            5899999887763 334      5899977 6654

>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A

Probab=91.91  E-value=0.11  Score=40.09  Aligned_cols=44  Identities=25%  Similarity=0.385  Sum_probs=23.2

Q ss_pred             CcCCccccccccccc--CCCCCccceeceec-Ccc------cEEEEecCCCccc
Q 027645           45 GVTTKSSIFDIELQL--ETPLPLEWERCLDI-QSG------EIHFYNTRTHKKT   89 (220)
Q Consensus        45 ~~~krk~i~~iEL~l--~~pLPsgWEq~LDl-qSG------~iYY~N~~T~~st   89 (220)
                      ++++|.+|.+.+=.+  +.+||.||+..+-+ ++|      .|||++. +|++-
T Consensus         4 ~~~~rr~~i~~~~~~~~~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP-~Gkkf   56 (97)
T 3c2i_A            4 SPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAF   56 (97)
T ss_dssp             -----------CCCCCCCTTSCTTCEEEEEECCSSTTTTCEEEEEECT-TSCEE
T ss_pred             CCcccceeEecCCcccCCCCCCCCCEEEEEEecCCCCCCcceEEEECC-CCCEE
Confidence            567788888777544  47899999887653 333      6899988 67553

>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3

Probab=90.53  E-value=0.27  Score=39.98  Aligned_cols=45  Identities=24%  Similarity=0.385  Sum_probs=31.3

Q ss_pred             CCcCCccccccccccc--CCCCCccceeceec-Ccc------cEEEEecCCCccc
Q 027645           44 KGVTTKSSIFDIELQL--ETPLPLEWERCLDI-QSG------EIHFYNTRTHKKT   89 (220)
Q Consensus        44 ~~~~krk~i~~iEL~l--~~pLPsgWEq~LDl-qSG------~iYY~N~~T~~st   89 (220)
                      -+.++|.+|.++|-..  ..+||.||+..+-+ ++|      .|||++.. |++-
T Consensus        17 ~~~~~rr~vi~~~~~~~~~~~LP~GWkRe~~~RksG~Sagk~DVYY~SP~-GKkf   70 (133)
T 1ub1_A           17 ASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQ-GKAF   70 (133)
T ss_dssp             SCCCCCCCCCCTTSCSSCCCCBTTBCEEEEEECCCSSSCCSEEEEEECTT-SCEE
T ss_pred             cCccCccceeeccccccCCCCCCCCCEEEEEEecCCCCCCceeEEEECCC-CCee
Confidence            4567788888666544  47899999877663 444      68999874 6543

>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E

Probab=82.72  E-value=0.52  Score=34.39  Aligned_cols=21  Identities=38%  Similarity=0.901  Sum_probs=17.6

Q ss_pred             eeCccceeEeEeeCCCCCCCCCCcC
Q 027645          177 TACMRCHMLVMLCKSSPTCPNCKFL  201 (220)
Q Consensus       177 ~gC~~ClmyVM~~k~~p~CP~Ck~~  201 (220)
                      .+|.+|+..|    ....||+|.+.
T Consensus        12 ~AC~~C~~~~----~~~~CPnC~s~   32 (69)
T 1ryq_A           12 KACRHCHYIT----SEDRCPVCGSR   32 (69)
T ss_dssp             EEETTTCBEE----SSSSCTTTCCC
T ss_pred             hhHHhCCccc----cCCcCCCccCC
Confidence            5899999965    77899999864

>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}

Probab=82.56  E-value=0.55  Score=35.31  Aligned_cols=27  Identities=30%  Similarity=0.741  Sum_probs=18.8

Q ss_pred             cceeeeeCccceeEeEeeCCCCCCCCCCcCC
Q 027645          172 QEMVATACMRCHMLVMLCKSSPTCPNCKFLH  202 (220)
Q Consensus       172 ~~mv~~gC~~ClmyVM~~k~~p~CP~Ck~~~  202 (220)
                      ..|..-+|.+|+..+  ..  -.||+|.+..
T Consensus        19 ~~m~~rAC~~C~~v~--~~--d~CPnCgs~~   45 (81)
T 3p8b_A           19 SHMSEKACRHCHYIT--SE--DRCPVCGSRD   45 (81)
T ss_dssp             ---CCEEETTTCBEE--SS--SSCTTTCCCC
T ss_pred             cchhHHHHhhCCCcc--CC--CCCCCCCCCc
Confidence            678888999999875  22  3799999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	220
d1pina1	34	b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho	4e-04
d1tk7a1	45	b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb)	0.001
d1i5hw_	50	b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain	0.002
d1jmqa_	46	b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens	0.002
d2jmfa1	33	b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII	0.004

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 63 LPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG 95
          LP  WE+ +   SG ++++N  T+      P G
Sbjct: 2  LPPGWEKRMSRSSGRVYYFNHITNASQWERPSG 34

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 33.5 bits (77), Expect = 0.001
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 62 PLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR 94
          PLP  WE+ +      ++F N +       DPR
Sbjct: 12 PLPDGWEKKIQ-SDNRVYFVNHKNRTTQWEDPR 43

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 1/33 (3%)

Query: 62 PLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR 94
          PLP  WE       G + F N    K    DPR
Sbjct: 11 PLPPGWEERTH-TDGRVFFINHNIKKTQWEDPR 42

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 56 ELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR 94
          E+  + PLP  WE      SG+ +F N      T  DPR
Sbjct: 2  EIPDDVPLPAGWEMAKT-SSGQRYFKNHIDQTTTWQDPR 39

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 31.5 bits (72), Expect = 0.004
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 62 PLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR 94
          PLP  WE      +GE  F +  T + T  DPR
Sbjct: 2  PLPPGWEIRYT-AAGERFFVDHNTRRTTFEDPR 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d2jmfa1	33	Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr	99.42
d1jmqa_	46	Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606	99.36
d1pina1	34	Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId	99.31
d1tk7a1	45	Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso	99.28
d1i5hw_	50	Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n	99.25
d2rm0w1	37	Formin binding protein FBP28 domain {Domestic mous	98.57
d1o6wa2	46	Splicing factor prp40 {Baker's yeast (Saccharomyce	98.22
d1ywia1	28	Huntingtin-interacting protein HYPA/FBP11 {Human (	98.12
d1o6wa1	29	Splicing factor prp40 {Baker's yeast (Saccharomyce	98.05
d2dk1a1	38	WW domain-binding protein 4, WBP4 {Human (Homo sap	97.93
d2ho2a1	33	Amyloid beta A4 precursor protein-binding family B	97.38
d1eg3a3	38	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	91.1
d1qk9a_	92	Methyl-CpG-binding protein 2, MECP2 {Human (Homo s	88.15

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=4.2e-14  Score=89.18  Aligned_cols=33  Identities=39%  Similarity=0.674  Sum_probs=31.5

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR   94 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR   94 (220)
                      +|||.|||++.| .+|++||+||.|++++|+|||
T Consensus         1 GpLP~GWe~~~d-~~G~~Yyinh~t~~T~w~~PR   33 (33)
T d2jmfa1           1 GPLPPGWEIRYT-AAGERFFVDHNTRRTTFEDPR   33 (33)
T ss_dssp             SCCCTTEEEEEC-TTSCEEEEETTTCCEESSCCC
T ss_pred             CccCCCeeEEEC-CCCCEEEEECCCCcEecCCCC
Confidence            589999999999 589999999999999999998

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-13  Score=92.52  Aligned_cols=40  Identities=35%  Similarity=0.545  Sum_probs=36.3

Q ss_pred             ccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           56 ELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        56 EL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      |+.-+.+||.|||++.| ++|++||+|+.|++++|+|||.+
T Consensus         2 d~~~~~~LP~GWe~~~d-~~G~~Yyinh~t~~T~w~~Pr~~   41 (46)
T d1jmqa_           2 EIPDDVPLPAGWEMAKT-SSGQRYFKNHIDQTTTWQDPRKA   41 (46)
T ss_dssp             CCCSSCCCCTTBCCBCC-SSCCCBEEETTTTEEESSCTTTS
T ss_pred             CCCccCCCCCCceEEEC-CCCCEEEEECCCCCEecCCCCcc
Confidence            45567899999999999 47999999999999999999986

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.5e-13  Score=83.95  Aligned_cols=33  Identities=27%  Similarity=0.557  Sum_probs=31.6

Q ss_pred             CCCccceeceecCcccEEEEecCCCcccCCCCC
Q 027645           62 PLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR   94 (220)
Q Consensus        62 pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR   94 (220)
                      .||.||++++|..+|++||+|+.|++++|++|.
T Consensus         1 ~LP~GW~~~~d~~~G~~YY~n~~T~~T~W~~Pt   33 (34)
T d1pina1           1 KLPPGWEKRMSRSSGRVYYFNHITNASQWERPS   33 (34)
T ss_dssp             CCCTTEEEEECTTSCCEEEEETTTCCEESSCSC
T ss_pred             CcCCCcEEEECCCCCCEEEEECCCCCEEccCCC
Confidence            499999999999999999999999999999985

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.28  E-value=7e-13  Score=88.56  Aligned_cols=35  Identities=29%  Similarity=0.577  Sum_probs=32.7

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      .|||.|||++.|. +|++||+|+.|++++|+|||.+
T Consensus        11 gpLP~GWe~~~d~-~G~~Yyinh~t~~T~w~~PR~q   45 (45)
T d1tk7a1          11 GPLPDGWEKKIQS-DNRVYFVNHKNRTTQWEDPRTQ   45 (45)
T ss_dssp             SSSSSSCCEEEET-TTEEEEEETTTTEEEEESCCCT
T ss_pred             CCCCCCceEEECC-CCCEEEEECCCCCEECCCCCcC
Confidence            6999999999996 7999999999999999999963

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=1.8e-12  Score=88.18  Aligned_cols=36  Identities=33%  Similarity=0.558  Sum_probs=33.6

Q ss_pred             CCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      ..|||.|||++.|. +|++||+|+.|++++|+|||..
T Consensus         9 ~~pLP~gWe~~~~~-~G~~YY~nh~t~~T~w~~Pr~~   44 (50)
T d1i5hw_           9 LGPLPPGWEERTHT-DGRVFFINHNIKKTQWEDPRMQ   44 (50)
T ss_dssp             CSSCSTTEEEEECT-TSCEEEEETTTTEEESSCTTTS
T ss_pred             CCCCCCCceEEECC-CCCEEEEECCCCCEeCCCCCCC
Confidence            47999999999995 7999999999999999999986

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1.8e-08  Score=64.33  Aligned_cols=34  Identities=26%  Similarity=0.460  Sum_probs=30.8

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG   95 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~   95 (220)
                      +.+++.|+.+.|. .|++||+|+.|++++|+.|.+
T Consensus         2 A~~~s~W~e~~~~-~Gr~YY~N~~T~~s~We~P~e   35 (37)
T d2rm0w1           2 ATAVSEWTEYKTA-DGKTYYYNNRTLESTWEKPQE   35 (37)
T ss_dssp             CCCSCCEEEEECT-TCCEEEEETTTTEEESSCCSS
T ss_pred             CCCccCCEEEECC-CCCEEEEECCCCCEeCCCccc
Confidence            4678999999986 799999999999999999875

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=3e-07  Score=61.25  Aligned_cols=31  Identities=19%  Similarity=0.368  Sum_probs=28.3

Q ss_pred             ccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           65 LEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        65 sgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      .+|+.+.|. .|++||+|+.|++++|+.|+..
T Consensus        14 ~~W~e~~~~-~Gr~YYyN~~T~es~We~P~~~   44 (46)
T d1o6wa2          14 NGWKAAKTA-DGKVYYYNPTTRETSWTIPAFE   44 (46)
T ss_dssp             HTCEEEECT-TCCEEEEETTTTEEESSCCCCC
T ss_pred             CCCeEEECC-CCCEEEEECCCCCEecCCCccc
Confidence            489999996 6999999999999999999864

>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Huntingtin-interacting protein HYPA/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5.9e-07  Score=54.32  Aligned_cols=28  Identities=29%  Similarity=0.482  Sum_probs=25.3

Q ss_pred             ccceeceecCcccEEEEecCCCcccCCCC
Q 027645           65 LEWERCLDIQSGEIHFYNTRTHKKTSGDP   93 (220)
Q Consensus        65 sgWEq~LDlqSG~iYY~N~~T~~stw~dP   93 (220)
                      +.|....+. .|++||+|..|++++|+.|
T Consensus         1 S~W~e~~~~-~G~~YYyN~~T~eS~We~P   28 (28)
T d1ywia1           1 SMWTEHKSP-DGRTYYYNTETKQSTWEKP   28 (28)
T ss_dssp             CCEEEEEET-TTEEEEEETTTTEEEESCC
T ss_pred             CccEEEECC-CCCEEEeECCCCCEecCCC
Confidence            469999997 5999999999999999987

>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=1.1e-06  Score=53.48  Aligned_cols=28  Identities=43%  Similarity=0.646  Sum_probs=25.2

Q ss_pred             ccceeceecCcccEEEEecCCCcccCCCC
Q 027645           65 LEWERCLDIQSGEIHFYNTRTHKKTSGDP   93 (220)
Q Consensus        65 sgWEq~LDlqSG~iYY~N~~T~~stw~dP   93 (220)
                      +.|+...+. .|++||+|..|++++|+.|
T Consensus         2 s~W~e~~~~-~G~~YYyN~~T~eS~WekP   29 (29)
T d1o6wa1           2 SIWKEAKDA-SGRIYYYNTLTKKSTWEKP   29 (29)
T ss_dssp             CCEEEEECT-TCCEEEEETTTTEEESSCC
T ss_pred             CccEEEECC-CCCEEEeECCCCCEecCCC
Confidence            469999886 5999999999999999987

>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: WW domain-binding protein 4, WBP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.6e-06  Score=55.50  Aligned_cols=30  Identities=17%  Similarity=0.348  Sum_probs=27.2

Q ss_pred             cceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645           66 EWERCLDIQSGEIHFYNTRTHKKTSGDPRGS   96 (220)
Q Consensus        66 gWEq~LDlqSG~iYY~N~~T~~stw~dPR~~   96 (220)
                      .|..+.+. .|++||+|..|++++|+.|...
T Consensus         2 ~W~e~~~~-~G~~YYyN~~T~eS~We~P~~~   31 (38)
T d2dk1a1           2 RWVEGITS-EGYHYYYDLISGASQWEKPEGF   31 (38)
T ss_dssp             CEEECCCS-TTCCCEEESSSCCEESSCCTTC
T ss_pred             CCeEEECC-CCCEEEEECCCCCEecCCChhH
Confidence            59999986 7999999999999999998765

>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 1, APBB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=5.8e-05  Score=46.91  Aligned_cols=31  Identities=29%  Similarity=0.499  Sum_probs=27.9

Q ss_pred             CCCccceeceecCcccEEEEecCCCcccCCCCC
Q 027645           62 PLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR   94 (220)
Q Consensus        62 pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR   94 (220)
                      .||.||++.-|. +| +||..-.||.++|++|.
T Consensus         2 dLPpGW~ki~D~-~G-~YYWHiptGttQwe~P~   32 (33)
T d2ho2a1           2 DLPAGWMRVQDT-SG-TYYWHIPTGTTQWEPPG   32 (33)
T ss_dssp             CSCTTEEEEECS-SC-EEEEETTTTEEESSCCC
T ss_pred             CCCCcceeeecC-CC-ceEEEecCCcccccCCC
Confidence            589999999996 47 99999999999999874

>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.061  Score=33.91  Aligned_cols=30  Identities=20%  Similarity=0.278  Sum_probs=23.6

Q ss_pred             CCCCccceeceecCcccEEEEecCCCcccCC
Q 027645           61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSG   91 (220)
Q Consensus        61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~   91 (220)
                      ..+-.-||+.+.. +.--||+||.|..+.|+
T Consensus         9 ~SV~~PWeRait~-n~VPYYINH~~e~T~WD   38 (38)
T d1eg3a3           9 TSVQGPWERAISP-NKVPYYINHETQTTCWD   38 (38)
T ss_dssp             TTCCTTEEEEECT-TSCEEEEETTTTEEESS
T ss_pred             cccccchhhhccc-cCCCeEeecccccccCC
Confidence            3444459999975 46669999999999995

>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methyl-CpG-binding protein 2, MECP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.15  E-value=0.27  Score=35.50  Aligned_cols=43  Identities=23%  Similarity=0.319  Sum_probs=27.1

Q ss_pred             CcCCcccccc-cccccC-CCCCccceeceec-Cc------ccEEEEecCCCcc
Q 027645           45 GVTTKSSIFD-IELQLE-TPLPLEWERCLDI-QS------GEIHFYNTRTHKK   88 (220)
Q Consensus        45 ~~~krk~i~~-iEL~l~-~pLPsgWEq~LDl-qS------G~iYY~N~~T~~s   88 (220)
                      +...|.++.. -....+ ..||.||...+=. ++      +.|||+.. +|++
T Consensus         4 ~p~~rr~~~~~~~~~~~dp~Lp~GW~r~~~~R~~g~~~gk~Dvyy~sP-~Gkk   55 (92)
T d1qk9a_           4 SPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKA   55 (92)
T ss_dssp             CCSCCCCCSSCSSCCSSBCCSSSSCEEEECCCCCSSSCSCCCEEEEET-TTEE
T ss_pred             CcccccccccccCccccCCCCCCCCEEEEEEecCCCCCceeeEEEECC-CCCe
Confidence            3455666663 334444 4499999886553 33      47999987 5654