Citrus Sinensis ID: 027666

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MIFYMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MIFYMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSrtikpeydlvNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLfgakaannpLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLgssycwsgnlISSIAIHSLYNASILMIIFLS
Flexible Loop (DISEMBL)
MIFYMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS
Low Complexity Region (SEG)
MIFYMFNLHIPLGYGGLSIVAYTLHQPVldlqtqalslllfqvlelsaalFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS
Disordered region (IsUnstruct)
*IFYMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFL*
Disordered Region (DISOPRED)
MIFYMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAA****V*EILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS
Disordered Region (DISEMBL)
MIFYMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS
Disordered Region (DISPRO)
MIFYMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS
Transmembrane Helix (TMHMM)
iiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIFYMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
224127051	235	predicted protein [Populus trichocarpa]	0.981	0.919	0.680	2e-72
255553791	292	prenyl-dependent CAAX protease, putative	0.986	0.743	0.640	5e-71
356517514	301	PREDICTED: uncharacterized protein LOC10	0.977	0.714	0.623	6e-70
255637706	301	unknown [Glycine max]	0.977	0.714	0.618	1e-68
225446329	298	PREDICTED: uncharacterized protein LOC10	0.995	0.734	0.645	3e-67
302143276	388	unnamed protein product [Vitis vinifera]	0.977	0.554	0.648	1e-66
297836838	300	CAAX amino terminal protease family prot	0.963	0.706	0.544	1e-59
18399457	301	CAAX amino terminal protease family prot	0.963	0.704	0.521	1e-56
449503235	279	PREDICTED: uncharacterized protein LOC10	1.0	0.788	0.559	3e-55
449443851	300	PREDICTED: uncharacterized protein LOC10	1.0	0.733	0.559	4e-55

>gi|224127051|ref|XP_002329373.1| predicted protein [Populus trichocarpa] gi|222870423|gb|EEF07554.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/216 (68%), Positives = 170/216 (78%)

Query: 1   MIFYMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPE 60
           M  YMFN HIPLG GGLSIVA  LHQPVLD QT+ LSLL  Q+LEL+A+L LL  T KPE
Sbjct: 19  MALYMFNFHIPLGIGGLSIVANVLHQPVLDPQTEVLSLLAIQILELAASLLLLKSTAKPE 78

Query: 61  YDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLS 120
           Y++V+FFKT +   +RNWL AS+LGF  L  LVFL SLVADRL G KA NNP+V+EILLS
Sbjct: 79  YEVVSFFKTDELSKKRNWLQASSLGFGFLVLLVFLTSLVADRLIGPKAVNNPIVKEILLS 138

Query: 121 SDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFL 180
           S IS  A +LV C++ PLLEE VYRGFLL SLASTM+W+ AV++SSA+FS AHFS +NF+
Sbjct: 139 SSISKVACILVYCLVTPLLEEIVYRGFLLKSLASTMNWQQAVLLSSAVFSAAHFSGENFI 198

Query: 181 QLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMI 216
           QLFIIGCVLG SY WSGNL S I  HSLYNA  L+I
Sbjct: 199 QLFIIGCVLGCSYSWSGNLCSPILTHSLYNALTLII 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553791|ref|XP_002517936.1| prenyl-dependent CAAX protease, putative [Ricinus communis] gi|223542918|gb|EEF44454.1| prenyl-dependent CAAX protease, putative [Ricinus communis]

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 139/217 (64%), Positives = 166/217 (76%)

Query: 4   YMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPEYDL 63
           YMFNLHIPLG GGLSIVAY L Q +LD QT+ LSLL+ Q+LEL   L LL  T KPE  L
Sbjct: 76  YMFNLHIPLGIGGLSIVAYLLQQSLLDPQTEVLSLLVIQILELIGVLVLLRFTGKPENKL 135

Query: 64  VNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDI 123
            +FFK+ + P ERNW+LAS LGF  LT LVFL S +AD    AK  +NP+++EILLSS++
Sbjct: 136 SSFFKSYELPKERNWVLASLLGFGSLTLLVFLTSFLADVFIEAKDVSNPILKEILLSSNV 195

Query: 124 SATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLF 183
           S TA VLV C + PL+EE VYRGFLLTSL STM+W+ AV +SS +FS AHFS +NFLQLF
Sbjct: 196 SKTACVLVYCFVTPLMEEIVYRGFLLTSLTSTMNWQKAVFLSSMVFSAAHFSGENFLQLF 255

Query: 184 IIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS 220
           +IG VLG  YCW+GNL SSIA+HSLYNA  L+I F+S
Sbjct: 256 VIGIVLGCCYCWTGNLSSSIAVHSLYNAMTLIITFVS 292

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517514|ref|XP_003527432.1| PREDICTED: uncharacterized protein LOC100806529 isoform 1 [Glycine max]

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 134/215 (62%), Positives = 162/215 (75%)

Query: 4   YMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPEYDL 63
           Y+F LHIP  +GGLS+VA    QPVLD QT+ALSLL  Q+LE   AL LL  T KP+Y  
Sbjct: 85  YLFTLHIPFSFGGLSVVALFNGQPVLDPQTEALSLLTIQILEFGGALVLLKYTAKPQYKF 144

Query: 64  VNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDI 123
            NF +  K  + RNW L+SA+GF  L  L+FL SL+ADRLFG+K  NNP+++++LL+SDI
Sbjct: 145 SNFSRKNKLLSNRNWFLSSAVGFGFLVLLIFLTSLLADRLFGSKPVNNPILKDMLLNSDI 204

Query: 124 SATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLF 183
           S  + VL  CI+ PLLEE VYRGFLLTSL+ST+ W+ AV ISS +FS  HFS +NFLQLF
Sbjct: 205 SRLSCVLAYCIVTPLLEEVVYRGFLLTSLSSTLEWQQAVAISSVVFSAIHFSGENFLQLF 264

Query: 184 IIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIF 218
           IIGCVLG SYCWSGNL SSIAIHSLYNA  L+I +
Sbjct: 265 IIGCVLGCSYCWSGNLSSSIAIHSLYNALTLVITY 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637706|gb|ACU19176.1| unknown [Glycine max]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 133/215 (61%), Positives = 160/215 (74%)

Query: 4   YMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPEYDL 63
           Y+F LHIP  +GGLS+VA    QPVLD QT+ALSLL  Q+LE   AL LL    KP+Y  
Sbjct: 85  YLFTLHIPFSFGGLSVVALFNGQPVLDPQTEALSLLTIQILEFGGALVLLEYIAKPQYKF 144

Query: 64  VNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDI 123
            NF +  K  + RNW L+SA+GF  L  L+FL SL+ADRLFG+K  NNP+++++LL+SDI
Sbjct: 145 SNFSRKNKLLSNRNWFLSSAVGFGFLVLLIFLTSLLADRLFGSKPVNNPILKDMLLNSDI 204

Query: 124 SATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLF 183
           S  + VL  CI+ PLLEE VYRGFLLTSL ST+ W+ AV ISS +FS  HFS +NFLQLF
Sbjct: 205 SRLSCVLAYCIVTPLLEEVVYRGFLLTSLFSTLEWQQAVAISSVVFSAIHFSGENFLQLF 264

Query: 184 IIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIF 218
           IIGCVLG SYCWSGNL SSIAIHSLYNA  L+I +
Sbjct: 265 IIGCVLGCSYCWSGNLSSSIAIHSLYNALTLVITY 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446329|ref|XP_002273804.1| PREDICTED: uncharacterized protein LOC100265959 [Vitis vinifera]

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 142/220 (64%), Positives = 166/220 (75%), Gaps = 1/220 (0%)

Query: 1   MIFYMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPE 60
           M FY F+LHIP  +GGLS+VA  LHQPV+D QT+ALS+L  Q LEL  AL LL+ T KP 
Sbjct: 80  MAFYFFSLHIPFSFGGLSVVAQILHQPVIDPQTEALSILTLQTLELIGALLLLNYTAKPG 139

Query: 61  YDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLS 120
           Y   + F+  +    RNWLLASA+GF  L  LVFL SLVAD L G KA NNP+++EILLS
Sbjct: 140 YRF-SVFRGDQLSTRRNWLLASAIGFGFLVLLVFLTSLVADILIGPKAVNNPILKEILLS 198

Query: 121 SDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFL 180
           S++S  A +LV CI+ PLLEE VYRGFLLTSLASTM W+ AV+I+SAIFS AHFS +N L
Sbjct: 199 SNVSEIACILVYCIVTPLLEETVYRGFLLTSLASTMKWQQAVIITSAIFSAAHFSGENSL 258

Query: 181 QLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS 220
           QLFIIGCVLG SYCW+G+L SSI IHSLYNA  L I  LS
Sbjct: 259 QLFIIGCVLGCSYCWTGSLSSSIVIHSLYNALTLTITLLS 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143276|emb|CBI21837.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/216 (64%), Positives = 164/216 (75%), Gaps = 1/216 (0%)

Query: 1   MIFYMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPE 60
           M FY F+LHIP  +GGLS+VA  LHQPV+D QT+ALS+L  Q LEL  AL LL+ T KP 
Sbjct: 80  MAFYFFSLHIPFSFGGLSVVAQILHQPVIDPQTEALSILTLQTLELIGALLLLNYTAKPG 139

Query: 61  YDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLS 120
           Y   + F+  +    RNWLLASA+GF  L  LVFL SLVAD L G KA NNP+++EILLS
Sbjct: 140 YRF-SVFRGDQLSTRRNWLLASAIGFGFLVLLVFLTSLVADILIGPKAVNNPILKEILLS 198

Query: 121 SDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFL 180
           S++S  A +LV CI+ PLLEE VYRGFLLTSLASTM W+ AV+I+SAIFS AHFS +N L
Sbjct: 199 SNVSEIACILVYCIVTPLLEETVYRGFLLTSLASTMKWQQAVIITSAIFSAAHFSGENSL 258

Query: 181 QLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMI 216
           QLFIIGCVLG SYCW+G+L SSI IHSLYNA  L I
Sbjct: 259 QLFIIGCVLGCSYCWTGSLSSSIVIHSLYNALTLTI 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836838|ref|XP_002886301.1| CAAX amino terminal protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297332141|gb|EFH62560.1| CAAX amino terminal protease family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/213 (54%), Positives = 154/213 (72%), Gaps = 1/213 (0%)

Query: 4   YMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPEYDL 63
           YMF+LHIPL +GGLSIVA  LH+ VLD QTQ LSL++ Q++ELS  + LL  T KP+   
Sbjct: 87  YMFSLHIPLSFGGLSIVANILHRQVLDPQTQVLSLVVLQMVELSGTVLLLRTTAKPQCKS 146

Query: 64  VNFFK-TIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSD 122
           +NF K   +S  ERNW++ SALG   L   +F+ SLVAD+LFG+KA +   + +IL+S +
Sbjct: 147 INFLKGNNESREERNWVVGSALGLGCLVGFIFVTSLVADQLFGSKAVHESELEKILVSGE 206

Query: 123 ISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQL 182
           ++ +    + C++AP+LEE VYR FLLTSLAS M W  A+VISS +F+ AHFS  +F+QL
Sbjct: 207 VARSGCFALYCVVAPILEEIVYRRFLLTSLASRMEWWKALVISSGVFAAAHFSGQDFVQL 266

Query: 183 FIIGCVLGSSYCWSGNLISSIAIHSLYNASILM 215
           F IGCV+GS Y WSGNL SS+ +HSLYNA  L+
Sbjct: 267 FGIGCVIGSCYIWSGNLASSVLVHSLYNALTLL 299

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399457|ref|NP_565483.1| CAAX amino terminal protease family protein [Arabidopsis thaliana] gi|13878021|gb|AAK44088.1|AF370273_1 unknown protein [Arabidopsis thaliana] gi|17104585|gb|AAL34181.1| unknown protein [Arabidopsis thaliana] gi|20197698|gb|AAM15211.1| predicted protein [Arabidopsis thaliana] gi|26450643|dbj|BAC42433.1| unknown protein [Arabidopsis thaliana] gi|330251968|gb|AEC07062.1| CAAX amino terminal protease family protein [Arabidopsis thaliana]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 111/213 (52%), Positives = 149/213 (69%), Gaps = 1/213 (0%)

Query: 4   YMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPEYDL 63
           YMF+LHIPL +GGLSIVA  LH+ VLD QTQ LSL++ Q++EL+  + LL  T KP+   
Sbjct: 87  YMFSLHIPLSFGGLSIVANILHRQVLDPQTQVLSLVVLQMVELAGTVLLLRTTAKPQCKS 146

Query: 64  VNFFKTIKSPAE-RNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSD 122
           +NF K      E RNW++ SALG   L   +F+ SLVAD+LFG KA +   + +I++S +
Sbjct: 147 INFLKGNNETREGRNWVVGSALGLGCLVGFIFVTSLVADQLFGPKAVHESELEKIMVSGE 206

Query: 123 ISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQL 182
           ++ +    + C++AP+LEE VYR FLLTSLAS M W  A+VISS +F+  HFS ++F+QL
Sbjct: 207 VARSGCFALYCVVAPILEEIVYRRFLLTSLASRMEWWKALVISSGVFAAGHFSGEDFVQL 266

Query: 183 FIIGCVLGSSYCWSGNLISSIAIHSLYNASILM 215
           F IGC LG  Y WSGNL SS+ +HSLYNA  L+
Sbjct: 267 FGIGCGLGLCYSWSGNLASSVLVHSLYNALTLL 299

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503235|ref|XP_004161901.1| PREDICTED: uncharacterized protein LOC101228787 [Cucumis sativus]

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 123/220 (55%), Positives = 155/220 (70%)

Query: 1   MIFYMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPE 60
           M  Y+F+LHIPL  G LS+V+  +H P+LD QT+ALS L  Q LE    L LL  T KP 
Sbjct: 60  MALYIFSLHIPLSLGSLSLVSKLMHVPILDPQTKALSRLAIQTLEFILTLLLLKLTAKPN 119

Query: 61  YDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLS 120
           Y    FF+  +   +RNW+ ASA G   L SLVFL SL+A+ + G KA +N +++EIL  
Sbjct: 120 YRFRYFFRDNELCNKRNWIFASAFGVGFLFSLVFLTSLLAESVIGPKAVSNLVLKEILDC 179

Query: 121 SDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFL 180
           S+IS TA  +  C++ PLLEE VYRGFLL S++S M W+ AVVISSA+FS AH S++N L
Sbjct: 180 SNISRTACFIAYCVVTPLLEETVYRGFLLASISSEMQWQQAVVISSAVFSAAHLSVENSL 239

Query: 181 QLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS 220
           QLFIIGCVLG SYCW+GNL SSI IHSLYNA  L++ +LS
Sbjct: 240 QLFIIGCVLGCSYCWTGNLRSSILIHSLYNAMSLLLTYLS 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443851|ref|XP_004139689.1| PREDICTED: uncharacterized protein LOC101217192 [Cucumis sativus]

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 123/220 (55%), Positives = 155/220 (70%)

Query: 1   MIFYMFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPE 60
           M  Y+F+LHIPL  G LS+V+  +H P+LD QT+ALS L  Q LE    L LL  T KP 
Sbjct: 81  MALYIFSLHIPLSLGSLSLVSKLMHVPILDPQTKALSRLAIQTLEFILTLLLLKLTAKPN 140

Query: 61  YDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLS 120
           Y    FF+  +   +RNW+ ASA G   L SLVFL SL+A+ + G KA +N +++EIL  
Sbjct: 141 YRFRYFFRDNELCNKRNWIFASAFGVGFLFSLVFLTSLLAESVIGPKAVSNLVLKEILDC 200

Query: 121 SDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFL 180
           S+IS TA  +  C++ PLLEE VYRGFLL S++S M W+ AVVISSA+FS AH S++N L
Sbjct: 201 SNISRTACFIAYCVVTPLLEETVYRGFLLASISSEMQWQQAVVISSAVFSAAHLSVENSL 260

Query: 181 QLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFLS 220
           QLFIIGCVLG SYCW+GNL SSI IHSLYNA  L++ +LS
Sbjct: 261 QLFIIGCVLGCSYCWTGNLRSSILIHSLYNAMSLLLTYLS 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2827507	301	AT2G20725 "AT2G20725" [Arabido	0.963	0.704	0.469	4.2e-47
TAIR|locus:2012487	353	AT1G14270 [Arabidopsis thalian	0.754	0.470	0.337	1e-20
TAIR|locus:2175836	347	AT5G60750 "AT5G60750" [Arabido	0.627	0.397	0.340	6.8e-14
TIGR_CMR|BA_1378	337	BA_1378 "transcriptional regul	0.413	0.270	0.336	6.3e-11
GENEDB_PFALCIPARUM|PFI0660c	432	PFI0660c "protease, putative"	0.463	0.236	0.300	1.4e-09
UNIPROTKB|Q8I317	432	PFI0660c "Protease, putative"	0.463	0.236	0.300	1.4e-09
UNIPROTKB|Q71XU3	228	LMOf2365_2102 "CAAX amino term	0.7	0.675	0.245	5.5e-09
UNIPROTKB|Q81TY1	284	BAS1041 "CAAX amino terminal p	0.468	0.362	0.320	1.7e-07
TIGR_CMR|BA_1120	284	BA_1120 "CAAX amino terminal p	0.468	0.362	0.320	1.7e-07
UNIPROTKB|Q81V64	228	BAS0603 "CAAX amino terminal p	0.627	0.605	0.248	7.8e-07

TAIR|locus:2827507 AT2G20725 "AT2G20725" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 100/213 (46%), Positives = 132/213 (61%)

Query:     4 YMFNLHIPLGYGGLSIVAYTLHQPVXXXXXXXXXXXXXXXXXXXXXXFLLSRTIKPEYDL 63
             YMF+LHIPL +GGLSIVA  LH+ V                       LL  T KP+   
Sbjct:    87 YMFSLHIPLSFGGLSIVANILHRQVLDPQTQVLSLVVLQMVELAGTVLLLRTTAKPQCKS 146

Query:    64 VNFFKTIKSPAE-RNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSD 122
             +NF K      E RNW++ SALG   L   +F+ SLVAD+LFG KA +   + +I++S +
Sbjct:   147 INFLKGNNETREGRNWVVGSALGLGCLVGFIFVTSLVADQLFGPKAVHESELEKIMVSGE 206

Query:   123 ISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQL 182
             ++ +    + C++AP+LEE VYR FLLTSLAS M W  A+VISS +F+  HFS ++F+QL
Sbjct:   207 VARSGCFALYCVVAPILEEIVYRRFLLTSLASRMEWWKALVISSGVFAAGHFSGEDFVQL 266

Query:   183 FIIGCVLGSSYCWSGNLISSIAIHSLYNASILM 215
             F IGC LG  Y WSGNL SS+ +HSLYNA  L+
Sbjct:   267 FGIGCGLGLCYSWSGNLASSVLVHSLYNALTLL 299

GO:0003674 "molecular_function" evidence=ND

GO:0006508 "proteolysis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2012487 AT1G14270 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 60/178 (33%), Positives = 104/178 (58%)

Query:    51 FLLSRTIKP-EYDLVNFFKTIKSPA--ERNWLLASALGFAVLTSLVFLASLVADRLFGAK 107
             F +++T  P   D++ +   ++ P   ++ WL+   +G       + L  +V   +F  +
Sbjct:   165 FTVAKTFDPLPEDILRY--DLRQPVNLQKGWLVWGGIGLVGAVGAIALTGVVLS-VFRTE 221

Query:   108 AAN---NPLVREILL--SSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAV 162
             A     + L++ + L  SS+IS  ++V +  I+APLLEE V+RGF + SL   +    A+
Sbjct:   222 APEREVDSLMKLLPLIGSSNISTLSLVGITGILAPLLEETVFRGFFMVSLTKWVPTPIAI 281

Query:   163 VISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMII-FL 219
             +ISSA F++AHF+   F QLFI+G VLG SY  + NLI+ + IH  +N+ +++++ FL
Sbjct:   282 IISSAAFALAHFTPGEFPQLFILGSVLGLSYAQTRNLITPMVIHGFWNSGVILLLTFL 339

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TAIR|locus:2175836 AT5G60750 "AT5G60750" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 6.8e-14, P = 6.8e-14
 Identities = 49/144 (34%), Positives = 79/144 (54%)

Query:    77 NWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPL----VREILLSSDISATAI-VLV 131
             NW L   +G  +   +  L+ L  + L      ++P+    V + +++ D  A A+  +V
Sbjct:   201 NWQLDVIIGCFMFPFVNRLSQLNLN-LLPLPPTSSPVSLSSVEQSIMARDPVAMALYAVV 259

Query:   132 NCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGS 191
               I AP+ EE V+RGFLL SL   M    A+++SS  F++AHF++   L L  +G VLG 
Sbjct:   260 VSICAPVWEEIVFRGFLLPSLTRYMPVWCAILVSSIAFALAHFNVQRMLPLVFLGVVLGL 319

Query:   192 SYCWSGNLISSIAIHSLYNASILM 215
              +  S NL+ S+ +HSL+N  + M
Sbjct:   320 IFARSRNLLPSMLLHSLWNGFVFM 343

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TIGR_CMR|BA_1378 BA_1378 "transcriptional regulator, AbrB family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 157 (60.3 bits), Expect = 6.3e-11, P = 6.3e-11
 Identities = 32/95 (33%), Positives = 58/95 (61%)

Query:   117 ILLSSDISATAIVLVN-CIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFS 175
             ++ +S+I  T    ++ C++AP++EE ++RGF L  +A     + AV+ISS IF + HF 
Sbjct:   120 VINTSNIYMTIFTFISACVLAPIMEEVIFRGFFLQRMAYKWGIKKAVIISSLIFGLGHFD 179

Query:   176 IDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYN 210
             +   +  F+ G V+   Y  + N+ ++IA+H+L N
Sbjct:   180 V---IGAFMFGVVMCLLYIKTKNIWTNIAVHALNN 211

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GENEDB_PFALCIPARUM|PFI0660c PFI0660c "protease, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 147 (56.8 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/103 (30%), Positives = 56/103 (54%)

Query:   114 VREILLSSDISATAIVLVN-CIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVA 172
             + EI+   +  +T + +++ C  AP  EE +YR F+L SL   M+   AV  SS  F++ 
Sbjct:   325 IDEIVHEKEFFSTFLCIISPCFSAPFFEEFIYRFFVLKSLNLFMNINYAVTFSSLFFAIH 384

Query:   173 HFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILM 215
             H +I N + LF +       Y ++ N++ ++ IHS +N  + +
Sbjct:   385 HLNIFNLIPLFFLSFFWSYIYIYTDNILVTMLIHSFWNIYVFL 427

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q8I317 PFI0660c "Protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 147 (56.8 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/103 (30%), Positives = 56/103 (54%)

Query:   114 VREILLSSDISATAIVLVN-CIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVA 172
             + EI+   +  +T + +++ C  AP  EE +YR F+L SL   M+   AV  SS  F++ 
Sbjct:   325 IDEIVHEKEFFSTFLCIISPCFSAPFFEEFIYRFFVLKSLNLFMNINYAVTFSSLFFAIH 384

Query:   173 HFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILM 215
             H +I N + LF +       Y ++ N++ ++ IHS +N  + +
Sbjct:   385 HLNIFNLIPLFFLSFFWSYIYIYTDNILVTMLIHSFWNIYVFL 427

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q71XU3 LMOf2365_2102 "CAAX amino terminal protease family protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 141 (54.7 bits), Expect = 5.5e-09, P = 5.5e-09
 Identities = 39/159 (24%), Positives = 73/159 (45%)

Query:    58 KPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREI 117
             KP+ + +   +  K      W++   +G  V      + S++   + G    +N    E+
Sbjct:    68 KPKENKIEIGEKTKPLLSIVWIVGGVIGLYVAQ---IICSVIITMISGE--LSNSANTEL 122

Query:   118 LLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSID 177
             L+    +A   ++   I+ P+LEE V+R  +   L++  +   A VISS  F + H  I 
Sbjct:   123 LVDLTKAAPIFLIFISILGPILEELVFRKVIFGGLSNVTNIHVAAVISSLFFGLLHGDIS 182

Query:   178 NFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMI 216
               L  F+IG +L   Y  +  ++ S+  H L N  +L++
Sbjct:   183 FLLTYFVIGLILCFLYTKTKRIVVSMGAHILMNTIVLLL 221

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81TY1 BAS1041 "CAAX amino terminal protease family protein" [Bacillus anthracis (taxid:1392)]

 Score = 135 (52.6 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 34/106 (32%), Positives = 58/106 (54%)

Query:   114 VREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAH 173
             +RE ++ S       V++   IAP++ E V+RGFLL   A+      A+++ + +F++ H
Sbjct:   117 LREPIIDSTGGYVYQVIMVVFIAPIIGEFVFRGFLLQRFAAKWGTSIAIIVVAILFALLH 176

Query:   174 FSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFL 219
               +D FL   +   VL   Y  + +L+  IAIH L NA ++ + FL
Sbjct:   177 --VD-FLGAVVFSVVLSIVYIRTNSLLMPIAIHMLNNAFVISLSFL 219

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_1120 BA_1120 "CAAX amino terminal protease family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 135 (52.6 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 34/106 (32%), Positives = 58/106 (54%)

Query:   114 VREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAH 173
             +RE ++ S       V++   IAP++ E V+RGFLL   A+      A+++ + +F++ H
Sbjct:   117 LREPIIDSTGGYVYQVIMVVFIAPIIGEFVFRGFLLQRFAAKWGTSIAIIVVAILFALLH 176

Query:   174 FSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFL 219
               +D FL   +   VL   Y  + +L+  IAIH L NA ++ + FL
Sbjct:   177 --VD-FLGAVVFSVVLSIVYIRTNSLLMPIAIHMLNNAFVISLSFL 219

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81V64 BAS0603 "CAAX amino terminal protease family protein" [Bacillus anthracis (taxid:1392)]

 Score = 128 (50.1 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 36/145 (24%), Positives = 73/145 (50%)

Query:    78 WLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNC-IIA 136
             W + + + F ++ S+  L  ++ +++ G    N+     +     I +  I ++   II+
Sbjct:    88 WTVGAVI-FLIVASIAVL--VIMEKM-GISFENSK-TETVQNDKSIYSFCIAVIGAAIIS 142

Query:   137 PLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQL-FIIGCVLGSSYCW 195
             P+ EE +YRG   T   +     + + ISS IF+V H    N L + F+ G V    Y  
Sbjct:   143 PIYEEILYRGVFYTFFRNRYGIWSGMFISSIIFTVVHIPTYNTLPVNFLSGVVFAWLYEK 202

Query:   196 SGNLISSIAIHSLYNASILMIIFLS 220
             + +++S++  H+L+N   +++ F+S
Sbjct:   203 TNSILSAMIAHALFNFIAVLLTFMS 227

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.120.118.1 hypothetical protein (235 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
pfam02517	93	pfam02517, Abi, CAAX protease self-immunity	1e-13
COG1266	226	COG1266, COG1266, Predicted metal-dependent membra	3e-05

>gnl|CDD|217080 pfam02517, Abi, CAAX protease self-immunity

 Score = 63.7 bits (156), Expect = 1e-13
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 123 ISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHF--SIDNFL 180
           +    ++L+  ++AP+ EE ++RGFLL  L        A++ISS +F + H       FL
Sbjct: 2   LLLLLLLLLLALLAPIGEELLFRGFLLPRLRKRFWPLLAILISSLLFGLLHLPNGPLAFL 61

Query: 181 QLFIIGCVLGSSYCWSGNLISSIAIHSLYNA 211
             F++G VLG  Y  +G+L ++I +H+L N 
Sbjct: 62  SAFLLGLVLGWLYLRTGSLWAAILLHALNNL 92

Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity. Length = 93

>gnl|CDD|224185 COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 58/219 (26%), Positives = 88/219 (40%), Gaps = 6/219 (2%)

Query: 5   MFNLHIPLGYGGLSIVAYTLHQPVLDLQTQALSLLLFQVLELSAALFLLSRTIKPEYDLV 64
           +  L + L    L I+   L   +L L      LLL   L     + LL          +
Sbjct: 4   LLRLKLRLLLILLLILLLFLWLLLLFLLLLLPLLLLLGGLLALLLVLLLLALFLIALAFL 63

Query: 65  NFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDIS 124
             F  +     +  L    L    L  +  L SL    L      N   +  +L  + + 
Sbjct: 64  LGFLKLLGLLRKGGLAWILLLLLGLLLIPLLFSLFLSLLSVGLLLN--QLPLLLTLAVLW 121

Query: 125 ATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSIDNFLQL-- 182
                LV  I+APL EE ++RG+LL +LA       A++ISS +F++ H      L    
Sbjct: 122 LLLFFLVLLILAPLAEELLFRGYLLGALARRFGPLLAIIISSLLFALLHLPNGLLLLYFL 181

Query: 183 --FIIGCVLGSSYCWSGNLISSIAIHSLYNASILMIIFL 219
             FI G +LG  Y  +G+L   I +H+L N   L+ + L
Sbjct: 182 LYFIAGLILGLLYLRTGSLWVPILLHALINLLALLFLSL 220

Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
TIGR03008	222	pepcterm_CAAX CAAX prenyl protease-related protein	99.86
PF02517	91	Abi: CAAX protease self-immunity; InterPro: IPR003	99.82
COG1266	226	Predicted metal-dependent membrane protease [Gener	99.77
KOG4130	291	consensus Prenyl protein protease [Posttranslation	99.04
COG4449	827	Predicted protease of the Abi (CAAX) family [Gener	97.02
PF10086	223	DUF2324: Putative membrane peptidase family (DUF23	95.96
COG2339	274	prsW Membrane proteinase, regulator of anti-sigma	94.44
PF13367	191	PrsW-protease: Protease prsW family	90.85

>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein

Probab=99.86  E-value=1.6e-19  Score=145.51  Aligned_cols=140  Identities=17%  Similarity=0.239  Sum_probs=93.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHhhcCChHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 027666           74 AERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLA  153 (220)
Q Consensus        74 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pi~EEl~fRg~l~~~l~  153 (220)
                      +.++...+...|.+...+.. ..+.......+.++.++....+...+........++..++++|+.||++|||++++.+.
T Consensus        66 ~~~~~l~gi~~Gv~~f~lwi-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~l~~~~l~vpi~EElfFRG~l~~~l~  144 (222)
T TIGR03008        66 RPRHLLFSAAVGVAVFVLWV-NLDWLLPFQGEPAGFDPSQIGNAGLTRWVLIAFRLAGATLVVPVMEELFWRSFLLRYLQ  144 (222)
T ss_pred             cHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCccccchhhhhcccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            34677777777776554432 22222222212222222212111110111111234567889999999999999999997


Q ss_pred             hh-c-------ChhHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhHHHHHHH
Q 027666          154 ST-M-------SWRNAVVISSAIFSVAHFSIDNFLQLFIIGCVLGSSYCWSGNLISSIAIHSLYNASILMII  217 (220)
Q Consensus       154 ~~-~-------~~~~ail~ss~iF~~~H~~~~~~~~~~~~gl~~~~~y~~t~~l~~~i~~H~~~N~~~~i~~  217 (220)
                      ++ +       ..+.+.++||++||+.|.   +....++.|+++|++|.||||++.|+.+|+.+|...-...
T Consensus       145 ~~~f~~~~~~~~~~~a~lisSllFal~H~---~~~~~~l~Gli~~~l~~~tgsL~~~I~~H~~~N~ll~~~v  213 (222)
T TIGR03008       145 QSDFESVPGGRFHWPSFLAVTLLFGLEHH---LIVAGLIAGLAYNLLLLRTGSIMACILAHAVTNGLLGLWV  213 (222)
T ss_pred             HhcccccccccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            63 1       136799999999999997   3555678899999999999999999999999999866544

The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.

>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases)

Probab=99.82  E-value=2.4e-19  Score=125.68  Aligned_cols=87  Identities=33%  Similarity=0.571  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHHHHhhCCchHHHH
Q 027666          126 TAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSI-DNFLQLFIIGCVLGSSYCWSGNLISSIA  204 (220)
Q Consensus       126 ~~~~~~~~i~~pi~EEl~fRg~l~~~l~~~~~~~~ail~ss~iF~~~H~~~-~~~~~~~~~gl~~~~~y~~t~~l~~~i~  204 (220)
                      +...+...+.+|+.||++|||++++.++++.+...++++|+++|++.|.+. .+....++.|+.+++.|.||||+|+++.
T Consensus         4 ~~~~~~~~~~~~~~EEl~fRg~l~~~l~~~~~~~~a~~is~~~f~~~H~~~~~~~~~~~~~g~~~~~~~~~t~sl~~~i~   83 (91)
T PF02517_consen    4 LIFFLVMILIAPIAEELFFRGFLFNRLRRRFNPWFAILISSLLFALWHLPNGPQFIYAFLFGLLFGYLYLRTGSLWAAII   83 (91)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            345678899999999999999999999999777999999999999999975 4578889999999999999999999999


Q ss_pred             HHHHHhHH
Q 027666          205 IHSLYNAS  212 (220)
Q Consensus       205 ~H~~~N~~  212 (220)
                      +|..+|.+
T Consensus        84 ~H~~~n~~   91 (91)
T PF02517_consen   84 AHALWNLV   91 (91)
T ss_pred             HHHHHHcC
Confidence            99999963

The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane

>COG1266 Predicted metal-dependent membrane protease [General function prediction only]

Probab=99.77  E-value=1.5e-16  Score=128.44  Aligned_cols=88  Identities=39%  Similarity=0.558  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhhhch----HHHHHHHHHHHHHHHHHHhhCCc
Q 027666          124 SATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISSAIFSVAHFSI----DNFLQLFIIGCVLGSSYCWSGNL  199 (220)
Q Consensus       124 ~~~~~~~~~~i~~pi~EEl~fRg~l~~~l~~~~~~~~ail~ss~iF~~~H~~~----~~~~~~~~~gl~~~~~y~~t~~l  199 (220)
                      ......+...+.+|+.||++|||++++++.++++.+.++++||++||+.|.+.    ......+..|+++++.|.||||+
T Consensus       121 ~~~~~~~~~~i~~~l~EEl~fRg~l~~~l~~~~~~~~a~iissllFal~H~~~~~~~~~~~~~~~~gli~~~~~~~t~~l  200 (226)
T COG1266         121 WLLLFFLVLLILAPLAEELLFRGYLLGALARRFGPLLAIIISSLLFALLHLPNGLLLLYFLLYFIAGLILGLLYLRTGSL  200 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            34556788999999999999999999999999999999999999999999964    56778889999999999999999


Q ss_pred             hHHHHHHHHHhH
Q 027666          200 ISSIAIHSLYNA  211 (220)
Q Consensus       200 ~~~i~~H~~~N~  211 (220)
                      +.++..|..+|.
T Consensus       201 ~~~i~~H~~~N~  212 (226)
T COG1266         201 WVPILLHALINL  212 (226)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999995

>KOG4130 consensus Prenyl protein protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.3e-08  Score=80.10  Aligned_cols=85  Identities=29%  Similarity=0.342  Sum_probs=72.8

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHhhhch--------------------HHHHHHHHHHH
Q 027666          129 VLVNCIIAPLLEEAVYRGFLLTSLAST-MSWRNAVVISSAIFSVAHFSI--------------------DNFLQLFIIGC  187 (220)
Q Consensus       129 ~~~~~i~~pi~EEl~fRg~l~~~l~~~-~~~~~ail~ss~iF~~~H~~~--------------------~~~~~~~~~gl  187 (220)
                      .+-.-+++|+.||++||.-+.....+- ++...++..+.+.||..|.+.                    .|+.++.+.|-
T Consensus       131 ~~RN~iiaPLtEElvfracmlp~~l~~~~s~l~avF~~PLfFGvAH~HHiyEqL~~g~~~~~~ilL~t~fQfsYTtlFG~  210 (291)
T KOG4130|consen  131 WFRNFIIAPLTEELVFRACMLPTYLNLIQSSLQAVFWQPLFFGVAHAHHIYEQLQEGSMTTVSILLTTCFQFSYTTLFGG  210 (291)
T ss_pred             HHHhhhhccchHHHHHHHHHHHHHHHhhhcchhhHHHhhHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999999999999999998876 788889999999999999852                    23556667777


Q ss_pred             HHHHHHHhhCCchHHHHHHHHHhHHH
Q 027666          188 VLGSSYCWSGNLISSIAIHSLYNASI  213 (220)
Q Consensus       188 ~~~~~y~~t~~l~~~i~~H~~~N~~~  213 (220)
                      .=+.++.|||++|.|+.+|+.+|...
T Consensus       211 yTaflF~rTghl~~~iLvHAfCN~MG  236 (291)
T KOG4130|consen  211 YTAFLFVRTGHLWCPILVHAFCNIMG  236 (291)
T ss_pred             HHHHHhhhcCCchHHHHHHHHHhhcC
Confidence            77778899999999999999999754

>COG4449 Predicted protease of the Abi (CAAX) family [General function prediction only]

Probab=97.02  E-value=0.00046  Score=61.07  Aligned_cols=81  Identities=21%  Similarity=0.178  Sum_probs=59.4

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhcChhHHHHHHH--HHHHHhhhch---------------HHHHHHHHHHHHHHH
Q 027666          129 VLVNCIIAPLLEEAVYRGFLLTSLASTMSWRNAVVISS--AIFSVAHFSI---------------DNFLQLFIIGCVLGS  191 (220)
Q Consensus       129 ~~~~~i~~pi~EEl~fRg~l~~~l~~~~~~~~ail~ss--~iF~~~H~~~---------------~~~~~~~~~gl~~~~  191 (220)
                      ++...++..+.||+.||..+...=.+...+|..+-...  ++|.++|.-.               .......+.|+....
T Consensus       712 iL~vIl~PAl~EElvFRvvLlP~P~E~r~~W~tl~a~~~l~LfvLyHplnA~T~y~rg~PvFf~PiFL~ltglLGL~Ctv  791 (827)
T COG4449         712 ILTVILIPALGEELVFRVVLLPGPGEGRRPWVTLGAATGLVLFVLYHPLNALTFYPRGAPVFFRPIFLLLTGLLGLGCTV  791 (827)
T ss_pred             hhhheehhhccccceeEEEecCCCCccccchHhHHHHHHHHHHHHhhhhhhhhccccCCcceeccHHHHHHHHHhhhhhh
Confidence            45566777789999999999876555434444333333  4899999732               123455688999999


Q ss_pred             HHHhhCCchHHHHHHHHH
Q 027666          192 SYCWSGNLISSIAIHSLY  209 (220)
Q Consensus       192 ~y~~t~~l~~~i~~H~~~  209 (220)
                      .|.-|+|+|+.+..|-..
T Consensus       792 ty~vT~SlW~iV~lHW~v  809 (827)
T COG4449         792 TYRVTGSLWPIVLLHWAV  809 (827)
T ss_pred             hHHhccchHHHHHHHHHH
Confidence            999999999999999754

>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.96  E-value=0.4  Score=39.00  Aligned_cols=30  Identities=20%  Similarity=0.162  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 027666          125 ATAIVLVNCIIAPLLEEAVYRGFLLTSLAST  155 (220)
Q Consensus       125 ~~~~~~~~~i~~pi~EEl~fRg~l~~~l~~~  155 (220)
                      .....+..++.+++.||. -|-.-++.+.+|
T Consensus        60 ~~l~~ly~~l~AGiFEE~-gR~i~~k~l~kk   89 (223)
T PF10086_consen   60 PILYALYGGLMAGIFEET-GRYIGFKYLLKK   89 (223)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence            344678899999999994 344444444443

However, they are predicted to be integral membrane proteins (with several transmembrane segments).

>COG2339 prsW Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.44  E-value=2.6  Score=35.36  Aligned_cols=16  Identities=31%  Similarity=0.553  Sum_probs=13.3

Q ss_pred             HHHHHHHHhhHHHHHH
Q 027666          128 IVLVNCIIAPLLEEAV  143 (220)
Q Consensus       128 ~~~~~~i~~pi~EEl~  143 (220)
                      ..+...+.+|+.||..
T Consensus       106 ~~l~~al~~G~vEE~~  121 (274)
T COG2339         106 LFLGSALLAGLVEEPL  121 (274)
T ss_pred             HHHHHHHhhhhhHHHH
Confidence            4577889999999986

>PF13367 PrsW-protease: Protease prsW family

Probab=90.85  E-value=6.6  Score=30.78  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHhh---------CCchHHHHHHHHHhHHHHH
Q 027666          182 LFIIGCVLGSSYCWS---------GNLISSIAIHSLYNASILM  215 (220)
Q Consensus       182 ~~~~gl~~~~~y~~t---------~~l~~~i~~H~~~N~~~~i  215 (220)
                      ..+.|..++....++         ..+..++..|.++|.....
T Consensus       132 t~i~g~~l~~~~~~~~~~~~~~~~~~~~~a~~lH~~~N~~~~~  174 (191)
T PF13367_consen  132 TAIFGYGLGLAKRRRKRGFRLALLLGFLLAVLLHGLWNFPLSL  174 (191)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            345565566555322         2366789999999998765

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00