Citrus Sinensis ID: 027681

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKRYPPSSEYKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIYL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHcccccHHccccccccccHHHHHHcccccccccccEHHHHHccHHccccccccccccHcHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccHccccccccccccccccccccccccHccccccccccHHHHHHHHHHHHHHHHccEEccccEEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
MDIDFWASRVHSAKHFSAVRasrlntdnhsivdeteidddvkacfpcpfcyLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGlrnggsamLGKELssflgsptivrgnapeslpdpllspflcsgtlsdtkgiqkddctnkfslasdlkryppsseyKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIYL
Flexible Loop (DISEMBL)
mdidfwasrvhsakhfsavrasrlntdnhsivdeteidddvkaCFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFslasdlkryppSSEYKLLWSQLLFKKLANKisvsstmhfkidVLLVIGIYL
Low Complexity Region (SEG)
MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKRYPPSSEYKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIYL
Disordered region (IsUnstruct)
****FWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQH*************************************************LSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKRYPPSSEYKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIY*
Disordered Region (DISOPRED)
***DFW*****************************EIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMV***************************************************LSPFLC********************************************************HFKIDVLLVIGIYL
Disordered Region (DISEMBL)
MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKRYPPSSEYKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIYL
Disordered Region (DISPRO)
*****WA****SAKHFSAVRASRL*****SIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCL*********A****E**SFLGS***********LP*PLLS***C*****************************PSSEYKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIYL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKRYPPSSEYKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q7XBA5	208	Protein DEHYDRATION-INDUC	yes	no	0.577	0.610	0.496	2e-28
Q5JME8	202	Protein DEHYDRATION-INDUC	no	no	0.509	0.554	0.478	1e-24
Q688X9	226	Protein DEHYDRATION-INDUC	no	no	0.718	0.699	0.337	1e-17
Q39083	206	Protein DEHYDRATION-INDUC	yes	no	0.527	0.563	0.387	3e-15
Q6NM26	222	Protein DEHYDRATION-INDUC	yes	no	0.659	0.653	0.333	7e-15
Q5W794	233	Protein DEHYDRATION-INDUC	no	no	0.595	0.562	0.339	4e-14
Q9FJ17	211	Protein DEHYDRATION-INDUC	no	no	0.518	0.540	0.377	2e-13
Q6H6E6	245	Protein DEHYDRATION-INDUC	no	no	0.431	0.387	0.330	1e-12
Q84J70	223	Protein DEHYDRATION-INDUC	no	no	0.654	0.645	0.341	2e-12
Q8VXU6	224	Protein DEHYDRATION-INDUC	no	no	0.309	0.303	0.426	2e-10

>sp|Q7XBA5|DI196_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Oryza sativa subsp. japonica GN=DI19-6 PE=2 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 81/129 (62%), Gaps = 2/129 (1%)

Query: 24  LNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL 83
           + T N  +  E   DD+     PCPFCY+E+E H +C HLQEEHCF+MKNAVCP+CA NL
Sbjct: 16  IPTINFQMYSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHCFDMKNAVCPICADNL 75

Query: 84  GKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK-ELSSFLGSPTIVRGN-APESLP 141
            KD  EHF VQH+  LKRR+    S   +  +A  G  E  S+  +P+   G  AP+S P
Sbjct: 76  DKDTDEHFRVQHSHLLKRRKSSSFSCKPSSAAADKGSYEEDSYFEAPSHCMGRPAPDSSP 135

Query: 142 DPLLSPFLC 150
           DPLLS F+C
Sbjct: 136 DPLLSQFIC 144

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5JME8|DI195_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Oryza sativa subsp. japonica GN=DI19-5 PE=2 SV=1

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 69/117 (58%), Gaps = 5/117 (4%)

Query: 45  FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRK 104
           FPCPFCY+E+E   IC+HLQEEHCF+ +NAVCPLCA N+G+D   HF VQH+  LKRR+ 
Sbjct: 37  FPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPLCADNIGRDMGAHFRVQHSHLLKRRKP 96

Query: 105 CLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAP--ESLPDPLLSPFLCSGTLSDTKG 159
              S      S         F G P  +  N    +  PDPLLS F+CS   +DT  
Sbjct: 97  SRPSSSWPTPS---NNSDPYFEGPPQYMMNNRTYQDPAPDPLLSQFICSMAQTDTNS 150

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q688X9|DI191_ORYSJ Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica GN=DI19-1 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 14/172 (8%)

Query: 1   MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMIC 60
           MD + W SR+ +AK F A   ++L   + + ++E ++D++V+  F CP+CY + +   +C
Sbjct: 1   MDSEHWISRLAAAKRFYA---AQLGHADRAGMEEVDMDEEVRPEFACPYCYEDHDVVSLC 57

Query: 61  SHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSA--ML 118
           +HL+EEH FE   A CP+C+  + KD   H  VQH    K RR+ L+  +  G  A  +L
Sbjct: 58  AHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGYLFKNRRR-LRRFVIPGSQALSLL 116

Query: 119 GKELSS-----FLGSPTIVRGNAPESL---PDPLLSPFLCSGTLSDTKGIQK 162
            ++L        LG       N+  +     DPLLS F  S   SDT+   K
Sbjct: 117 SRDLREAHLQVLLGGGGHRSNNSSNTTNISADPLLSSFGLSFPTSDTEETSK 168

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q39083|DI191_ARATH Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana GN=DI19-1 PE=1 SV=2

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 65/124 (52%), Gaps = 8/124 (6%)

Query: 33  DETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFM 92
           +E + DDD +  F CPFC    +   +C H+ +EH  E KNAVCP+C+  +G D   H  
Sbjct: 23  EEIDGDDDFQEEFACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVAHIT 82

Query: 93  VQHAS--SLKRRRKCLKSGLRNGGSAMLGKE-----LSSFLGSPTIVRGNAPESLPDPLL 145
           + H S   L+R+RK  KSG  N   ++L KE     L   LG  +     A    PDPLL
Sbjct: 83  LHHGSLFKLQRKRKSRKSGT-NSTLSLLRKELREGDLQRLLGFTSRNGSVASSVTPDPLL 141

Query: 146 SPFL 149
           S F+
Sbjct: 142 SSFI 145

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NM26|DI196_ARATH Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana GN=DI19-6 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 14/159 (8%)

Query: 1   MDIDFWASRVHSA-KHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMI 59
           MD D W+ R+ SA + +     SR  +DN    +E E +DD +  + CPFC    +   +
Sbjct: 1   MDSDSWSDRLASASRRYQLDFLSR--SDNFLGFEEIEGEDDFREEYACPFCSDYFDIVSL 58

Query: 60  CSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAML- 118
           C H+ E+H  + KN VCP+CA  +  D   H  +QHA+  K  RK  +   R G  +ML 
Sbjct: 59  CCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRK--RKSRRGGAQSMLS 116

Query: 119 --------GKELSSFLGSPTIVRGNAPESLPDPLLSPFL 149
                   G   S F G+   V  ++     DPLLS F+
Sbjct: 117 ILKREFPDGNFQSLFEGTSRAVSSSSASIAADPLLSSFI 155

Arabidopsis thaliana (taxid: 3702)

>sp|Q5W794|DI192_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp. japonica GN=DI19-2 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 25/156 (16%)

Query: 32  VDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHF 91
           V+E E     +A + CPFC  + +    C H+ +EH  E K+ VCP+CA  +G D   H 
Sbjct: 42  VEEVEARGGGEA-YNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHL 100

Query: 92  MVQHASSLK--RRRKCLK-------------SGLRNGGSAMLGKELSSFLGSPTIVRGNA 136
            +QH S  K  RRR+  K               LR+G        L SFLG  + V  N 
Sbjct: 101 TMQHGSYFKMQRRRRVRKISSGSHSLLSLLRKDLRDG-------SLQSFLGGSSYV-SNP 152

Query: 137 PESLPDPLLSPFLCSGTLSD-TKGIQKDDCTNKFSL 171
           P + PDP LS  +CS  +++ +K +  D   N F L
Sbjct: 153 PAAAPDPFLSSLICSLPVAEPSKDLHSDSSDNNFLL 188

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJ17|DI197_ARATH Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana GN=DI19-7 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 63/122 (51%), Gaps = 8/122 (6%)

Query: 34  ETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMV 93
           + E +DD+KA F CPFC  E +   +C H+   H  E KN VCP+C   +G D   H   
Sbjct: 32  DVEGEDDLKAEFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITT 91

Query: 94  QHASSLK-RRRKCLKSGLRNGGSAMLGKE-----LSSFLGSPTIVRGNAPESLPDPLLSP 147
           QH +  K +RR+ L+ G  +     L KE     L S  GS T +  +  +S  DPLLS 
Sbjct: 92  QHGNVFKVQRRRRLRKGGYSSTYLTLKKELREANLQSLGGSSTFIPSSNIDS--DPLLSS 149

Query: 148 FL 149
           F+
Sbjct: 150 FM 151

Involved in both red and blue light signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6H6E6|DI194_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica GN=DI19-4 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 17/112 (15%)

Query: 1   MDIDFWASRVHSAKHFSAVRASR----------------LNTDNHSIVDETEIDDDVKAC 44
           MD D W SR+ +AK   A++ ++                 + D +   D+ E +D+V+  
Sbjct: 1   MDSDHWISRLMAAKRQYALQRAQNHHHATATATATAASHSHLDRYGY-DDVEPEDEVRPD 59

Query: 45  FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHA 96
           FPCP+CY + +   +C+HL++EH FE K   CP+C+A + KD  +H  +QH+
Sbjct: 60  FPCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHS 111

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84J70|DI193_ARATH Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana GN=DI19-3 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 17/161 (10%)

Query: 1   MDIDFWASRVHSA-KHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMI 59
           MD D W+ R+ SA + +     SR  +D     +E + +++ +  F CPFC    +   +
Sbjct: 1   MDSDSWSDRLASATRRYQLAFPSR--SDTFLGFEEIDGEEEFREEFACPFCSDYFDIVSL 58

Query: 60  CSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGS---- 115
           C H+ E+H  E KN VCP+CA  +G D   H  +QHA+  K  R   K   R GGS    
Sbjct: 59  CCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHR---KRKPRRGGSYSTL 115

Query: 116 AMLGKEL------SSFLGSPTIVRGNAPESL-PDPLLSPFL 149
           ++L +E       S F GS  IV  ++  ++  DPLLS F+
Sbjct: 116 SILRREFPDGNFQSLFGGSSCIVSSSSSSNVAADPLLSSFI 156

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VXU6|DI194_ARATH Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana GN=DI19-4 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%)

Query: 33  DETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFM 92
           ++ E +DD+KA F CPFC  + +   +C H+ EEH  E KN VCP+C   +G D   H  
Sbjct: 35  EDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAKNGVCPVCTKRVGLDIVGHIT 94

Query: 93  VQHASSLK 100
            QHA+  K
Sbjct: 95  TQHANFFK 102

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
224119454	208	predicted protein [Populus trichocarpa]	0.759	0.802	0.640	2e-55
359491142	192	PREDICTED: protein DEHYDRATION-INDUCED 1	0.731	0.838	0.605	5e-50
255540495	299	conserved hypothetical protein [Ricinus	0.65	0.478	0.601	7e-41
449469572	189	PREDICTED: protein DEHYDRATION-INDUCED 1	0.7	0.814	0.441	4e-32
358248684	194	uncharacterized protein LOC100801801 [Gl	0.654	0.742	0.439	2e-27
115461655	208	Os05g0107900 [Oryza sativa Japonica Grou	0.577	0.610	0.496	1e-26
28195116	208	unknown [Oryza sativa Indica Group] gi|1	0.577	0.610	0.488	2e-25
116784380	229	unknown [Picea sitchensis] gi|116791117|	0.731	0.703	0.408	2e-23
357126984	223	PREDICTED: protein DEHYDRATION-INDUCED 1	0.531	0.524	0.454	2e-23
115442503	202	Os01g0971100 [Oryza sativa Japonica Grou	0.509	0.554	0.478	6e-23

>gi|224119454|ref|XP_002318076.1| predicted protein [Populus trichocarpa] gi|222858749|gb|EEE96296.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 130/167 (77%)

Query: 1   MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMIC 60
           MD+DFW SRV S+K+ SAV+A+  N+DNH  +D+++ DD+ +A FPCPFCY+EIE H+ C
Sbjct: 1   MDVDFWTSRVLSSKNLSAVQAASRNSDNHLAMDDSDGDDNSRAYFPCPFCYVEIEVHLFC 60

Query: 61  SHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK 120
           SHL +EHCF++KNAVCPLCAANLGKDA  HF+VQHASSLK RRK  KSGL  G SAMLGK
Sbjct: 61  SHLLDEHCFDLKNAVCPLCAANLGKDAIGHFIVQHASSLKHRRKHKKSGLWTGSSAMLGK 120

Query: 121 ELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTN 167
           +LSSFLGS T  R N  ES PDPLLSPFL + + SD +  Q D+  N
Sbjct: 121 DLSSFLGSSTNSRTNTHESAPDPLLSPFLGNLSRSDPRQSQHDEPFN 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491142|ref|XP_002280304.2| PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 5-like [Vitis vinifera] gi|297733696|emb|CBI14943.3| unnamed protein product [Vitis vinifera]

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 109/180 (60%), Positives = 130/180 (72%), Gaps = 19/180 (10%)

Query: 4   DFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHL 63
           DFWASRVHSAKH +AV+A+RLN+         E DDD +A FPCPFCY++IE  ++CSHL
Sbjct: 3   DFWASRVHSAKHLTAVQAARLNS---------EGDDDARAYFPCPFCYVDIEIPVLCSHL 53

Query: 64  QEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELS 123
           QEEHCF++KNAVCPLCAANLGKD   HF +QHA SLKRRRK  KSG          +ELS
Sbjct: 54  QEEHCFDLKNAVCPLCAANLGKDVIGHFTLQHAHSLKRRRKSQKSGAWTNSPL---RELS 110

Query: 124 SFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDC-TNKFSLASDLKRYPPSS 182
           SFLGS    RGN+ ES PDPLLSPFLCS ++SD  G Q+D C ++  S ASD+K   PS+
Sbjct: 111 SFLGS----RGNSYESAPDPLLSPFLCSISVSD--GNQQDKCSSDNASFASDMKSTVPST 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540495|ref|XP_002511312.1| conserved hypothetical protein [Ricinus communis] gi|223550427|gb|EEF51914.1| conserved hypothetical protein [Ricinus communis]

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 86/143 (60%), Positives = 108/143 (75%)

Query: 22  SRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAA 81
           +  N D+H ++D+++ DDD +A FPCPFCY++IE H++CSHLQ EHCF++KNAVCPLCAA
Sbjct: 114 NNFNRDHHLLIDDSDGDDDARAYFPCPFCYVDIEIHVLCSHLQNEHCFDLKNAVCPLCAA 173

Query: 82  NLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLP 141
           NLGKD   HF+V HASSLKRRRK LKSG   G SAM+ K+L SFLGS    R N  E+ P
Sbjct: 174 NLGKDVIGHFIVHHASSLKRRRKSLKSGPWIGSSAMINKDLGSFLGSSANGRANINEAAP 233

Query: 142 DPLLSPFLCSGTLSDTKGIQKDD 164
           DPLLSPFL   + S  KG ++D+
Sbjct: 234 DPLLSPFLGGVSHSHPKGSEQDE 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469572|ref|XP_004152493.1| PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 5-like [Cucumis sativus]

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 107/179 (59%), Gaps = 25/179 (13%)

Query: 1   MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMIC 60
           M+ +FWASRVH     SAV+A+ L++D          +DD +  F CP+CY++IE  ++C
Sbjct: 1   MEFNFWASRVHPTDQLSAVQAAMLHSDG---------EDDSRPYFSCPYCYVDIEVQVLC 51

Query: 61  SHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK 120
           SHLQ+EHCF+ +NAVCPLCAA+LGKD   HF  QH+SS+KRR+K  KS            
Sbjct: 52  SHLQDEHCFDFRNAVCPLCAASLGKDVIGHFTAQHSSSIKRRKKPEKSV----------- 100

Query: 121 ELSSFLGSPTIVRGNAPE--SLPDPLLSPFLCSGTLSDTKGIQKDD-CTNKFSLASDLK 176
             S F     I +G      S PDPLL PF+CS   SD +  ++DD   N  S+A ++K
Sbjct: 101 -SSGFNSKKVITKGREKRNGSAPDPLL-PFICSIPFSDHESGERDDRSENDASVAVNIK 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248684|ref|NP_001239667.1| uncharacterized protein LOC100801801 [Glycine max] gi|255644938|gb|ACU22969.1| unknown [Glycine max]

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 97/164 (59%), Gaps = 20/164 (12%)

Query: 1   MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMIC 60
           MD DF  S  HS KH SAV+A+RL++D         +D+D +  F CPFC  EIE  ++C
Sbjct: 1   MDFDFRTS-FHSVKHLSAVQAARLHSD---------VDNDGRCDFRCPFCDFEIEVPVLC 50

Query: 61  SHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK 120
           S+ +EEHC  +KN VCP+C  N+GKDA   F   H+SS +   K  KS +  G SAMLGK
Sbjct: 51  SNFEEEHCSALKNVVCPVCEENIGKDAIMQFT--HSSSRRWAWKPEKSSIWPGNSAMLGK 108

Query: 121 ELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDD 164
           +L++        RGN  ES+ DPLLSPF+C+     +     D+
Sbjct: 109 KLAT--------RGNKQESITDPLLSPFICNVPFPKSNNFHPDE 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115461655|ref|NP_001054427.1| Os05g0107900 [Oryza sativa Japonica Group] gi|75141142|sp|Q7XBA5.1|DI196_ORYSJ RecName: Full=Protein DEHYDRATION-INDUCED 19 homolog 6; AltName: Full=OsDi19-6 gi|14719312|gb|AAK73130.1|AC079022_3 unknown protein [Oryza sativa] gi|33151123|gb|AAP97430.1| drought-induced protein DI1 [Oryza sativa Japonica Group] gi|113577978|dbj|BAF16341.1| Os05g0107900 [Oryza sativa Japonica Group] gi|222629917|gb|EEE62049.1| hypothetical protein OsJ_16833 [Oryza sativa Japonica Group]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 81/129 (62%), Gaps = 2/129 (1%)

Query: 24  LNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL 83
           + T N  +  E   DD+     PCPFCY+E+E H +C HLQEEHCF+MKNAVCP+CA NL
Sbjct: 16  IPTINFQMYSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHCFDMKNAVCPICADNL 75

Query: 84  GKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK-ELSSFLGSPTIVRGN-APESLP 141
            KD  EHF VQH+  LKRR+    S   +  +A  G  E  S+  +P+   G  AP+S P
Sbjct: 76  DKDTDEHFRVQHSHLLKRRKSSSFSCKPSSAAADKGSYEEDSYFEAPSHCMGRPAPDSSP 135

Query: 142 DPLLSPFLC 150
           DPLLS F+C
Sbjct: 136 DPLLSQFIC 144

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28195116|gb|AAO33770.1| unknown [Oryza sativa Indica Group] gi|125550535|gb|EAY96244.1| hypothetical protein OsI_18142 [Oryza sativa Indica Group]

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/129 (48%), Positives = 80/129 (62%), Gaps = 2/129 (1%)

Query: 24  LNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL 83
           + T N  +  E   DD+     PCPFCY+E+E   +C HLQEEHCF+MKNAVCP+CA NL
Sbjct: 16  IPTINFQMYSEIAGDDEWWEYIPCPFCYIEVEVPFLCDHLQEEHCFDMKNAVCPICADNL 75

Query: 84  GKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK-ELSSFLGSPTIVRGN-APESLP 141
            KD  EHF VQH+  LKRR+    S   +  +A  G  E  S+  +P+   G  AP+S P
Sbjct: 76  DKDTDEHFRVQHSHLLKRRKSSSFSCKPSSAAADKGSYEEDSYFEAPSHCMGRPAPDSSP 135

Query: 142 DPLLSPFLC 150
           DPLLS F+C
Sbjct: 136 DPLLSQFIC 144

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116784380|gb|ABK23321.1| unknown [Picea sitchensis] gi|116791117|gb|ABK25863.1| unknown [Picea sitchensis] gi|224284059|gb|ACN39767.1| unknown [Picea sitchensis]

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 96/169 (56%), Gaps = 8/169 (4%)

Query: 1   MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMIC 60
           MD + WA+RV +AK   AV     +TD     DE E DDDV+A F CPFCY + +  ++C
Sbjct: 1   MDAELWAARVTAAKRHHAVHHYHHHTDRQFNFDELEGDDDVRADFTCPFCYEDFDIALLC 60

Query: 61  SHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRR--RKCLKSGL-RNGGSAM 117
            HL++EHC E KNA+CP+CAA +GKD   H  +QH    K +  R+  K GL  N   + 
Sbjct: 61  CHLEDEHCIETKNALCPVCAAKVGKDMVGHITLQHGHLFKMQRRRRLRKGGLPPNSTLSF 120

Query: 118 LGKE-----LSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQ 161
           L KE     L   LG  +     A  ++PDPLLS F+ + ++S++   Q
Sbjct: 121 LSKEFREGQLHPLLGGLSSRGVAANSAVPDPLLSSFVYNLSISESTEEQ 169

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126984|ref|XP_003565167.1| PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 5-like [Brachypodium distachyon]

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 79/121 (65%), Gaps = 4/121 (3%)

Query: 38  DDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHAS 97
           D ++   FPCPFCY+E+E   IC+HLQEEHCF+ +NAVCP+CA NLGK+ + HF VQH+ 
Sbjct: 58  DGELWEYFPCPFCYIEVEMPFICNHLQEEHCFDTRNAVCPICAENLGKNMSAHFRVQHSH 117

Query: 98  SLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDT 157
            LKRR+    S   +        E++S++ +  + +   PE  PDPLLS F+CS   +++
Sbjct: 118 LLKRRKPSKPSSWPSAAHGEEPYEVNSYMMNNRLCQD--PE--PDPLLSQFICSADQTES 173

Query: 158 K 158
           K
Sbjct: 174 K 174

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115442503|ref|NP_001045531.1| Os01g0971100 [Oryza sativa Japonica Group] gi|75106327|sp|Q5JME8.1|DI195_ORYSJ RecName: Full=Protein DEHYDRATION-INDUCED 19 homolog 5; AltName: Full=OsDi19-5 gi|57899211|dbj|BAD87360.1| putative drought-induced protein DI [Oryza sativa Japonica Group] gi|113535062|dbj|BAF07445.1| Os01g0971100 [Oryza sativa Japonica Group] gi|125529280|gb|EAY77394.1| hypothetical protein OsI_05382 [Oryza sativa Indica Group] gi|125573470|gb|EAZ14985.1| hypothetical protein OsJ_04920 [Oryza sativa Japonica Group] gi|215697475|dbj|BAG91469.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 69/117 (58%), Gaps = 5/117 (4%)

Query: 45  FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRK 104
           FPCPFCY+E+E   IC+HLQEEHCF+ +NAVCPLCA N+G+D   HF VQH+  LKRR+ 
Sbjct: 37  FPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPLCADNIGRDMGAHFRVQHSHLLKRRKP 96

Query: 105 CLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAP--ESLPDPLLSPFLCSGTLSDTKG 159
              S      S         F G P  +  N    +  PDPLLS F+CS   +DT  
Sbjct: 97  SRPSSSWPTPS---NNSDPYFEGPPQYMMNNRTYQDPAPDPLLSQFICSMAQTDTNS 150

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2148528	222	AT5G26990 [Arabidopsis thalian	0.781	0.774	0.316	1.2e-17
TAIR|locus:2078062	223	AT3G05700 [Arabidopsis thalian	0.645	0.636	0.355	5.3e-17
TAIR|locus:2155934	211	HRB1 "HYPERSENSITIVE TO RED AN	0.654	0.682	0.339	9.8e-16
TAIR|locus:2196125	221	AT1G02750 [Arabidopsis thalian	0.472	0.470	0.292	5.6e-13
TAIR|locus:2137819	228	AT4G02200 [Arabidopsis thalian	0.572	0.552	0.263	1.5e-06

TAIR|locus:2148528 AT5G26990 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 61/193 (31%), Positives = 91/193 (47%)

Query:     1 MDIDFWASRVHSA-KHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFC--YLEIEAH 57
             MD D W+ R+ SA + +     SR  +DN    +E E +DD +  + CPFC  Y +I + 
Sbjct:     1 MDSDSWSDRLASASRRYQLDFLSR--SDNFLGFEEIEGEDDFREEYACPFCSDYFDIVS- 57

Query:    58 MICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAM 117
              +C H+ E+H  + KN VCP+CA  +  D   H  +QHA+  K  RK  +   R G  +M
Sbjct:    58 -LCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRK--RKSRRGGAQSM 114

Query:   118 L---------GKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDD-CTN 167
             L         G   S F G+   V  ++     DPLLS F+    ++D   I +   C +
Sbjct:   115 LSILKREFPDGNFQSLFEGTSRAVSSSSASIAADPLLSSFI--SPMADDFFISESSLCAD 172

Query:   168 KFSLASDLKRYPP 180
               S    L +  P
Sbjct:   173 TSSAKKTLNQSLP 185

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

TAIR|locus:2078062 AT3G05700 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 58/163 (35%), Positives = 86/163 (52%)

Query:     1 MDIDFWASRVHSA-KHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFC--YLEIEAH 57
             MD D W+ R+ SA + +     SR  +D     +E + +++ +  F CPFC  Y +I + 
Sbjct:     1 MDSDSWSDRLASATRRYQLAFPSR--SDTFLGFEEIDGEEEFREEFACPFCSDYFDIVS- 57

Query:    58 MICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGS-- 115
              +C H+ E+H  E KN VCP+CA  +G D   H  +QHA+  K  RK  K   R GGS  
Sbjct:    58 -LCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRK-RKP--RRGGSYS 113

Query:   116 --AMLGKEL------SSFLGSPTIVRGNAPESLP-DPLLSPFL 149
               ++L +E       S F GS  IV  ++  ++  DPLLS F+
Sbjct:   114 TLSILRREFPDGNFQSLFGGSSCIVSSSSSSNVAADPLLSSFI 156

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

TAIR|locus:2155934 HRB1 "HYPERSENSITIVE TO RED AND BLUE" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 53/156 (33%), Positives = 77/156 (49%)

Query:     1 MDIDFWASRVHSAKHFSAVRASRLNTDNHSI-VDETEIDDDVKACFPCPFCYLEIEAHMI 59
             MD + W   ++    FS+  +SR       + + + E +DD+KA F CPFC  E +   +
Sbjct:     1 MDSNSW---INCPPVFSSSPSSRRYQSRSDLYLGDVEGEDDLKAEFMCPFCADEFDIVGL 57

Query:    60 CSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLK-RRRKCLKSGLRNGGSAML 118
             C H+   H  E KN VCP+C   +G D   H   QH +  K +RR+ L+ G  +     L
Sbjct:    58 CCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITTQHGNVFKVQRRRRLRKGGYSSTYLTL 117

Query:   119 GKEL-----SSFLGSPTIVRGNAPESLPDPLLSPFL 149
              KEL      S  GS T +  +  +S  DPLLS F+
Sbjct:   118 KKELREANLQSLGGSSTFIPSSNIDS--DPLLSSFM 151

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009414 "response to water deprivation" evidence=ISS

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

TAIR|locus:2196125 AT1G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 31/106 (29%), Positives = 55/106 (51%)

Query:     1 MDIDFWA-SRVHSAKHFSAVRASRLNTDNHSIVDE-TEIDDDVKACFPCPFCYLEIEAHM 58
             M+ D W  S   S++ + +  A++  +  +  ++E  E+DDD+   +PCPFC  + +   
Sbjct:     1 MEDDMWCVSSSGSSRSYRSETAAKYQSGPYQDLEEFEEVDDDIAVEYPCPFCASDYDLVE 60

Query:    59 ICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRK 104
             +C H+ EEH  E  N +CP+C+  +     +H    H   LK  +K
Sbjct:    61 LCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHHRDVLKSEQK 106

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009414 "response to water deprivation" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2137819 AT4G02200 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 38/144 (26%), Positives = 61/144 (42%)

Query:    34 ETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNA--------------VCPLC 79
             E E DD++   +PCPFC  + +   +C H+ EEH  +  N               +CP+C
Sbjct:    32 EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGFLHEAVSCKFRLFIICPVC 91

Query:    80 AANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPES 139
             +  +     +H   QH    KR  K       + G+    K L S +  P +   +  +S
Sbjct:    92 SRRVKMHMVDHITTQHRDVFKRLYKDESYSAFSPGTR---KYLQSLIDEP-LSTNHTSKS 147

Query:   140 LPDPLLSPFLCSGTLSDTKGIQKD 163
             + DPLLS      +   +K +Q D
Sbjct:   148 VLDPLLSFIYNPPSPKKSKLVQPD 171


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       220   0.00094  112 3  11 22  0.49    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  192 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.35u 0.20s 22.55t   Elapsed:  00:00:01
  Total cpu time:  22.35u 0.20s 22.55t   Elapsed:  00:00:01
  Start:  Sat May 11 04:26:10 2013   End:  Sat May 11 04:26:11 2013

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009414 "response to water deprivation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00120791 hypothetical protein (208 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
pfam05605	209	pfam05605, Di19, Drought induced 19 protein (Di19)	1e-38

>gnl|CDD|218654 pfam05605, Di19, Drought induced 19 protein (Di19)

 Score =  132 bits (333), Expect = 1e-38
 Identities = 67/165 (40%), Positives = 90/165 (54%), Gaps = 20/165 (12%)

Query: 15  HFSAVRASRLNTDNHS---IVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEM 71
           H SA  + +    + S   + ++ E +D+V+  FPCPFCY + +   +C H+ EEH FE 
Sbjct: 1   HASASASYQRALPSRSDLYLFEDIEGEDEVREEFPCPFCYEDFDIVSLCCHIDEEHPFEA 60

Query: 72  KNAVCPLCAANLGKDAAEHFMVQHASSLK--RRRKCLKSGLRNGGS----AMLGKELS-- 123
           KN VCP+CA  +GKD   H  VQH    K  RRR+     LR GGS    ++L +EL   
Sbjct: 61  KNGVCPVCADRVGKDMVAHITVQHGHLFKMQRRRR-----LRRGGSSSALSLLKRELRDG 115

Query: 124 ---SFLGSPTIVRG-NAPESLPDPLLSPFLCSGTLSDTKGIQKDD 164
              S LGS  +    NA +S PDPLLS F+CS   +DT    K D
Sbjct: 116 NLQSLLGSSCMSSSSNASDSAPDPLLSSFICSSPSADTSSTSKSD 160

This family consists of several drought induced 19 (Di19) like proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought. The precise function of Di19 is unknown. Length = 209

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	99.77
PF14571	105	Di19_C: Stress-induced protein Di19, C-terminal	99.49
KOG1280	381	consensus Uncharacterized conserved protein contai	97.61
KOG2923	67	consensus Uncharacterized conserved protein [Funct	94.74
COG5216	67	Uncharacterized conserved protein [Function unknow	94.35
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	89.89
PHA00732	79	hypothetical protein	89.42
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	88.78
smart00531	147	TFIIE Transcription initiation factor IIE.	88.22
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	88.11
KOG1842	505	consensus FYVE finger-containing protein [General	87.14
PLN03086	567	PRLI-interacting factor K; Provisional	86.37
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	85.93
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	83.98
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	83.78
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	83.0
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	82.55
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	82.18
PF14354	61	Lar_restr_allev: Restriction alleviation protein L	81.78
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	81.21
PF04780	466	DUF629: Protein of unknown function (DUF629); Inte	81.2
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	81.03
PRK09710	64	lar restriction alleviation and modification prote	80.96
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	80.34
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	80.11
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	80.03

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=99.77  E-value=1.8e-19  Score=125.21  Aligned_cols=53  Identities=32%  Similarity=0.726  Sum_probs=51.6

Q ss_pred             eecCCCCCccchHHHhhhhhhcccCCCcccccccccccccchhHhhhhhhhcc
Q 027681           44 CFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPfC~ed~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~vg~D~i~Hit~QH~   96 (220)
                      +|+||||+++||+.+|+.|++++|+.+.+++|||||+.+++.||++||+.+||
T Consensus         2 ~f~CP~C~~~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGKGFSESSLVEHCEDEHRSESKNVVCPICSSRVTDNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCCccCHHHHHHHHHhHCcCCCCCccCCCchhhhhhHHHHHHHHhcC
Confidence            79999999999999999999999999999999999999999999999999986

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF14571 Di19_C: Stress-induced protein Di19, C-terminal

Probab=99.49  E-value=8e-15  Score=115.55  Aligned_cols=76  Identities=25%  Similarity=0.355  Sum_probs=57.4

Q ss_pred             hhhhhhh-----hhhhcCCCCcCCCCCCCCCCCCcccccccCCCCCCCCCCCcccccccccccccccCCCChhhhhhhhh
Q 027681          115 SAMLGKE-----LSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKRYPPSSEYKLLWS  189 (220)
Q Consensus       115 ~~ll~ke-----LqsllGgs~~s~~~~sn~~pDPLLSsFi~n~~~~e~~~~e~~~~~~~~~~~~~~kr~~~~~~wk~~~~  189 (220)
                      +++|+||     ||+||||+++++++++|++|||||||||||+|.++.  .+..+......+++..+...+...|+...+
T Consensus         2 lsll~kelre~~LQsllGgs~~~~~~ssn~apDPLLSSFI~n~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~   79 (105)
T PF14571_consen    2 LSLLRKELREGYLQSLLGGSRSSSSSSSNSAPDPLLSSFICNFPAPEA--EEPSKSSSSSEEKKSSKKSSSEQNVKSSAD   79 (105)
T ss_pred             cchhhhhhhhhhhhhhcCCCcCCCCCCCCCCCcHHHHHHhcCCCCccc--cccCCccccccccccccccchhcccccccC
Confidence            5678998     699999986677889999999999999999999884  333333333345667777778888886655


Q ss_pred             HHH
Q 027681          190 QLL  192 (220)
Q Consensus       190 ~~l  192 (220)
                      +.|
T Consensus        80 ~~l   82 (105)
T PF14571_consen   80 SSL   82 (105)
T ss_pred             CCC
Confidence            443

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=97.61  E-value=3.8e-05  Score=72.34  Aligned_cols=41  Identities=32%  Similarity=0.752  Sum_probs=38.6

Q ss_pred             ceecCCCCCc-cchHHHhhhhhhcccCCCccccccccccccc
Q 027681           43 ACFPCPFCYL-EIEAHMICSHLQEEHCFEMKNAVCPLCAANL   83 (220)
Q Consensus        43 ~~F~CPfC~e-d~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v   83 (220)
                      ..|.||||++ .|....+.+|+..+|+.-...+|||||+...
T Consensus        78 qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~~~~  119 (381)
T KOG1280|consen   78 QSFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCAANP  119 (381)
T ss_pred             ccccCCcccccccchhHHHHHhhhcCcccCcceeeeccccCc
Confidence            3899999998 9999999999999999999889999999984

>KOG2923 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.74  E-value=0.011  Score=44.03  Aligned_cols=45  Identities=20%  Similarity=0.459  Sum_probs=29.7

Q ss_pred             CccCccc-cCCCccceecCCCCCccchH--HHhhhhhhcccCCCccccccccccccc
Q 027681           30 SIVDETE-IDDDVKACFPCPFCYLEIEA--HMICSHLQEEHCFEMKNAVCPLCAANL   83 (220)
Q Consensus        30 ~~~de~e-~ddd~r~~F~CPfC~ed~D~--~~Lc~H~~eeH~~e~k~vVCPVCa~~v   83 (220)
                      ..|+|++ ++|....+|||| |+..|.+  ..|.        .--..+.||-|+-.+
T Consensus         7 Veiedfe~~~e~~~y~yPCp-CGDrf~It~edL~--------~ge~Va~CpsCSL~I   54 (67)
T KOG2923|consen    7 VEIEDFEFDEENQTYYYPCP-CGDRFQITLEDLE--------NGEDVARCPSCSLII   54 (67)
T ss_pred             EEeecceeccCCCeEEcCCC-CCCeeeecHHHHh--------CCCeeecCCCceEEE
Confidence            3566777 445567799999 9875544  3332        223457899999875

>COG5216 Uncharacterized conserved protein [Function unknown]

Probab=94.35  E-value=0.021  Score=42.22  Aligned_cols=36  Identities=25%  Similarity=0.561  Sum_probs=24.8

Q ss_pred             CCccceecCCCCCccchH--HHhhhhhhcccCCCccccccccccccc
Q 027681           39 DDVKACFPCPFCYLEIEA--HMICSHLQEEHCFEMKNAVCPLCAANL   83 (220)
Q Consensus        39 dd~r~~F~CPfC~ed~D~--~~Lc~H~~eeH~~e~k~vVCPVCa~~v   83 (220)
                      ++...+|||| |+.-|.+  ..|..        --+.++||-|+-+|
T Consensus        17 e~~~ftyPCP-CGDRFeIsLeDl~~--------GE~VArCPSCSLiv   54 (67)
T COG5216          17 EEKTFTYPCP-CGDRFEISLEDLRN--------GEVVARCPSCSLIV   54 (67)
T ss_pred             CCceEEecCC-CCCEeEEEHHHhhC--------CceEEEcCCceEEE
Confidence            4567899999 9865544  33322        24568899999875

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=89.89  E-value=0.18  Score=27.85  Aligned_cols=23  Identities=26%  Similarity=0.595  Sum_probs=14.2

Q ss_pred             ecCCCCCc-cchHHHhhhhhhccc
Q 027681           45 FPCPFCYL-EIEAHMICSHLQEEH   67 (220)
Q Consensus        45 F~CPfC~e-d~D~~~Lc~H~~eeH   67 (220)
                      |.||+|+. --+..+|..|+...|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            67888876 445667777776654

...

>PHA00732 hypothetical protein

Probab=89.42  E-value=0.33  Score=36.68  Aligned_cols=42  Identities=26%  Similarity=0.729  Sum_probs=31.8

Q ss_pred             ecCCCCCccc-hHHHhhhhhhcccCCCcccccccccccccchhHhhhh
Q 027681           45 FPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHF   91 (220)
Q Consensus        45 F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~vg~D~i~Hi   91 (220)
                      |.|+.|++.| ....|..|....|.-    ..|++|...-. .+..|+
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~----~~C~~CgKsF~-~l~~H~   44 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHTL----TKCPVCNKSYR-RLNQHF   44 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccCC----CccCCCCCEeC-Chhhhh
Confidence            7899999855 678899998755542    26999998765 566666

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=88.78  E-value=0.27  Score=29.64  Aligned_cols=21  Identities=24%  Similarity=0.608  Sum_probs=18.4

Q ss_pred             eecCCCCCccchHHHhhhhhh
Q 027681           44 CFPCPFCYLEIEAHMICSHLQ   64 (220)
Q Consensus        44 ~F~CPfC~ed~D~~~Lc~H~~   64 (220)
                      ..+||+|++.|....|-.|..
T Consensus         2 l~~C~~CgR~F~~~~l~~H~~   22 (25)
T PF13913_consen    2 LVPCPICGRKFNPDRLEKHEK   22 (25)
T ss_pred             CCcCCCCCCEECHHHHHHHHH
Confidence            468999999999999999964

>smart00531 TFIIE Transcription initiation factor IIE

Probab=88.22  E-value=0.39  Score=39.41  Aligned_cols=40  Identities=23%  Similarity=0.444  Sum_probs=27.3

Q ss_pred             CCccceecCCCCCccchHHHhhhhhhcccCCCccccccccccccc
Q 027681           39 DDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL   83 (220)
Q Consensus        39 dd~r~~F~CPfC~ed~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v   83 (220)
                      +.....|.||.|+..|+...-....+   +  ....+||.|...+
T Consensus        94 e~~~~~Y~Cp~C~~~y~~~ea~~~~d---~--~~~f~Cp~Cg~~l  133 (147)
T smart00531       94 ETNNAYYKCPNCQSKYTFLEANQLLD---M--DGTFTCPRCGEEL  133 (147)
T ss_pred             ccCCcEEECcCCCCEeeHHHHHHhcC---C--CCcEECCCCCCEE
Confidence            44577999999988666544333322   2  3448999999986

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=88.11  E-value=0.25  Score=28.50  Aligned_cols=24  Identities=25%  Similarity=0.627  Sum_probs=16.9

Q ss_pred             ecCCCCCccchHHHhhhhhhcccC
Q 027681           45 FPCPFCYLEIEAHMICSHLQEEHC   68 (220)
Q Consensus        45 F~CPfC~ed~D~~~Lc~H~~eeH~   68 (220)
                      |.||+|...-....|..|+...|+
T Consensus         1 y~C~~C~y~t~~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTSKSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EESHHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCCHHHHHHHHHhhCc
Confidence            689999763347789999888775

>KOG1842 consensus FYVE finger-containing protein [General function prediction only]

Probab=87.14  E-value=0.24  Score=48.73  Aligned_cols=35  Identities=29%  Similarity=0.600  Sum_probs=30.3

Q ss_pred             CCccceecCCCCCccch-HHHhhhhhhcccCCCccc
Q 027681           39 DDVKACFPCPFCYLEIE-AHMICSHLQEEHCFEMKN   73 (220)
Q Consensus        39 dd~r~~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~   73 (220)
                      ++.+.-|.||+|.++|+ +..|-+|++.+|+.|-..
T Consensus        10 ~~i~egflCPiC~~dl~~~~~L~~H~d~eH~~ed~~   45 (505)
T KOG1842|consen   10 GEILEGFLCPICLLDLPNLSALNDHLDVEHFEEDEK   45 (505)
T ss_pred             chhhhcccCchHhhhhhhHHHHHHHHhhhccccchh
Confidence            56788999999988775 678999999999998764

>PLN03086 PRLI-interacting factor K; Provisional

Probab=86.37  E-value=0.62  Score=46.74  Aligned_cols=45  Identities=18%  Similarity=0.358  Sum_probs=35.4

Q ss_pred             eecCCCCCccchHHHhhhhhhcccCCCcccccccccccc-cchhHhhhhhh
Q 027681           44 CFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAAN-LGKDAAEHFMV   93 (220)
Q Consensus        44 ~F~CPfC~ed~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~-vg~D~i~Hit~   93 (220)
                      -+.||+|++.|....|-.|....|    +...|| |... ...++..|++.
T Consensus       453 H~~C~~Cgk~f~~s~LekH~~~~H----kpv~Cp-Cg~~~~R~~L~~H~~t  498 (567)
T PLN03086        453 HVHCEKCGQAFQQGEMEKHMKVFH----EPLQCP-CGVVLEKEQMVQHQAS  498 (567)
T ss_pred             CccCCCCCCccchHHHHHHHHhcC----CCccCC-CCCCcchhHHHhhhhc
Confidence            458999999888899999988865    678999 9754 34578888743

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.93  E-value=0.49  Score=34.10  Aligned_cols=27  Identities=26%  Similarity=0.694  Sum_probs=17.2

Q ss_pred             ccccccccccccc--chhHhhhhhhhccc
Q 027681           71 MKNAVCPLCAANL--GKDAAEHFMVQHAS   97 (220)
Q Consensus        71 ~k~vVCPVCa~~v--g~D~i~Hit~QH~~   97 (220)
                      ..+..||+|.+.+  ..|+-+|+.+.|+.
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            4456999999975  67999999776663

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=83.98  E-value=0.44  Score=30.40  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=22.9

Q ss_pred             ceecCCCCCccchHHHhhhhhhcccCCCccccccccccccc
Q 027681           43 ACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL   83 (220)
Q Consensus        43 ~~F~CPfC~ed~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v   83 (220)
                      .+|.||-|+..|++..-.        .+....+||.|...+
T Consensus         4 Y~y~C~~Cg~~fe~~~~~--------~~~~~~~CP~Cg~~~   36 (41)
T smart00834        4 YEYRCEDCGHTFEVLQKI--------SDDPLATCPECGGDV   36 (41)
T ss_pred             EEEEcCCCCCEEEEEEec--------CCCCCCCCCCCCCcc
Confidence            579999999877643211        125667899999843

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=83.78  E-value=0.6  Score=33.67  Aligned_cols=48  Identities=23%  Similarity=0.582  Sum_probs=13.9

Q ss_pred             cCCCCCcc-chHHHhhhhhhcccCCCcc---------------------ccccccccccc--chhHhhhhhh
Q 027681           46 PCPFCYLE-IEAHMICSHLQEEHCFEMK---------------------NAVCPLCAANL--GKDAAEHFMV   93 (220)
Q Consensus        46 ~CPfC~ed-~D~~~Lc~H~~eeH~~e~k---------------------~vVCPVCa~~v--g~D~i~Hit~   93 (220)
                      .|+||... -+...|..|+...|.+...                     .-.|++|....  ...+..||+.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHH
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcC
Confidence            39999775 4578899999999987432                     12399999974  4588899943

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.00  E-value=0.56  Score=26.45  Aligned_cols=21  Identities=19%  Similarity=0.621  Sum_probs=12.9

Q ss_pred             ecCCCCCccc-hHHHhhhhhhc
Q 027681           45 FPCPFCYLEI-EAHMICSHLQE   65 (220)
Q Consensus        45 F~CPfC~ed~-D~~~Lc~H~~e   65 (220)
                      |.||.|++.| +...|..|+..
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5677777643 45556666654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=82.55  E-value=0.43  Score=34.07  Aligned_cols=30  Identities=33%  Similarity=0.520  Sum_probs=21.9

Q ss_pred             eecCCCCCccchHHHhhhhhhcccCCCcccccccccccc
Q 027681           44 CFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAAN   82 (220)
Q Consensus        44 ~F~CPfC~ed~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~   82 (220)
                      .|.||-|++.+++.....         .-.+.||.|.+.
T Consensus         2 ~~~CP~CG~~iev~~~~~---------GeiV~Cp~CGae   31 (54)
T TIGR01206         2 QFECPDCGAEIELENPEL---------GELVICDECGAE   31 (54)
T ss_pred             ccCCCCCCCEEecCCCcc---------CCEEeCCCCCCE
Confidence            588999999886654321         236799999886

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.18  E-value=0.59  Score=30.95  Aligned_cols=35  Identities=26%  Similarity=0.520  Sum_probs=21.8

Q ss_pred             ecCCCCCccchHHHhhhhhhcccCCCcccccccccccccchhHhh
Q 027681           45 FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAE   89 (220)
Q Consensus        45 F~CPfC~ed~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~vg~D~i~   89 (220)
                      |.||.|+... +      +.+   ......||+.|...+..+.+.
T Consensus         1 m~Cp~Cg~~~-~------~~D---~~~g~~vC~~CG~Vl~e~~i~   35 (43)
T PF08271_consen    1 MKCPNCGSKE-I------VFD---PERGELVCPNCGLVLEENIID   35 (43)
T ss_dssp             ESBTTTSSSE-E------EEE---TTTTEEEETTT-BBEE-TTBS
T ss_pred             CCCcCCcCCc-e------EEc---CCCCeEECCCCCCEeeccccc
Confidence            6799997633 2      122   445667999998887766554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>PF14354 Lar_restr_allev: Restriction alleviation protein Lar

Probab=81.78  E-value=0.46  Score=33.00  Aligned_cols=31  Identities=29%  Similarity=0.682  Sum_probs=18.4

Q ss_pred             eecCCCCCc-cchHHHhhhhhhcccCCCc---cccccccccc
Q 027681           44 CFPCPFCYL-EIEAHMICSHLQEEHCFEM---KNAVCPLCAA   81 (220)
Q Consensus        44 ~F~CPfC~e-d~D~~~Lc~H~~eeH~~e~---k~vVCPVCa~   81 (220)
                      ..|||||+. .+.+..       ....+.   ..+.|.-|.+
T Consensus         3 LkPCPFCG~~~~~~~~-------~~~~~~~~~~~V~C~~Cga   37 (61)
T PF14354_consen    3 LKPCPFCGSADVLIRQ-------DEGFDYGMYYYVECTDCGA   37 (61)
T ss_pred             CcCCCCCCCcceEeec-------ccCCCCCCEEEEEcCCCCC
Confidence            468999975 443322       222222   4577999987

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=81.21  E-value=0.5  Score=41.22  Aligned_cols=49  Identities=20%  Similarity=0.356  Sum_probs=29.0

Q ss_pred             eecCCCCCccchHHHhhh--------------hhhcccCCCcccccccccccccchhHhhhhh
Q 027681           44 CFPCPFCYLEIEAHMICS--------------HLQEEHCFEMKNAVCPLCAANLGKDAAEHFM   92 (220)
Q Consensus        44 ~F~CPfC~ed~D~~~Lc~--------------H~~eeH~~e~k~vVCPVCa~~vg~D~i~Hit   92 (220)
                      ++.||+|+.+|....+..              |=.+.-|.==...|||-|----..+...+++
T Consensus         5 ~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F~~l~   67 (214)
T PF09986_consen    5 KITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDFEKLS   67 (214)
T ss_pred             ceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccccccccCC
Confidence            678999999888664433              3233333333457899998764333223443

>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function

Probab=81.20  E-value=0.95  Score=44.51  Aligned_cols=50  Identities=24%  Similarity=0.325  Sum_probs=35.6

Q ss_pred             cceecCCCCCc-cchHHHhhhhhhcccCCCcccccccccccccchhHhhhh
Q 027681           42 KACFPCPFCYL-EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHF   91 (220)
Q Consensus        42 r~~F~CPfC~e-d~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~vg~D~i~Hi   91 (220)
                      +.--.||+|.+ -.|..++..|++++|+..-.+-.=++...+++.+-++-|
T Consensus        55 WrFWiCp~CskkF~d~~~~~~H~~~eH~~~l~P~lqs~lPqrId~~w~e~I  105 (466)
T PF04780_consen   55 WRFWICPRCSKKFSDAESCLSHMEQEHPAGLKPKLQSVLPQRIDDDWAEMI  105 (466)
T ss_pred             eeEeeCCcccceeCCHHHHHHHHHHhhhhhcChhhhhhcCcccCHHHHHHH
Confidence            44678999987 899999999999999998766433344445444433333

A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=81.03  E-value=0.57  Score=29.89  Aligned_cols=24  Identities=33%  Similarity=0.690  Sum_probs=12.7

Q ss_pred             cCCCCCccchHHHhhhhhhcccCCCccccccccccc
Q 027681           46 PCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAA   81 (220)
Q Consensus        46 ~CPfC~ed~D~~~Lc~H~~eeH~~e~k~vVCPVCa~   81 (220)
                      +||.|+.++..            .|....|||-|..
T Consensus         4 ~Cp~C~se~~y------------~D~~~~vCp~C~~   27 (30)
T PF08274_consen    4 KCPLCGSEYTY------------EDGELLVCPECGH   27 (30)
T ss_dssp             --TTT-----E------------E-SSSEEETTTTE
T ss_pred             CCCCCCCccee------------ccCCEEeCCcccc
Confidence            69999765544            5667789999974

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>PRK09710 lar restriction alleviation and modification protein; Reviewed

Probab=80.96  E-value=0.62  Score=34.63  Aligned_cols=32  Identities=28%  Similarity=0.604  Sum_probs=21.2

Q ss_pred             eecCCCCCc-cchHHHhhhhhhcccCCCcccccccccccccc
Q 027681           44 CFPCPFCYL-EIEAHMICSHLQEEHCFEMKNAVCPLCAANLG   84 (220)
Q Consensus        44 ~F~CPfC~e-d~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~vg   84 (220)
                      .-|||||+. .+++.         |..-.-.++|.-|.+...
T Consensus         6 lKPCPFCG~~~~~v~---------~~~g~~~v~C~~CgA~~~   38 (64)
T PRK09710          6 VKPCPFCGCPSVTVK---------AISGYYRAKCNGCESRTG   38 (64)
T ss_pred             ccCCCCCCCceeEEE---------ecCceEEEEcCCCCcCcc
Confidence            468999976 44443         232234589999999743

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=80.34  E-value=0.75  Score=31.08  Aligned_cols=32  Identities=22%  Similarity=0.512  Sum_probs=22.5

Q ss_pred             ceecCCCCCccchHHHhhhhhhcccCCCcccccccccccc
Q 027681           43 ACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAAN   82 (220)
Q Consensus        43 ~~F~CPfC~ed~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~   82 (220)
                      .+|.|+-|+..|++.   ....+     .....||.|...
T Consensus         4 Yey~C~~Cg~~fe~~---~~~~~-----~~~~~CP~Cg~~   35 (52)
T TIGR02605         4 YEYRCTACGHRFEVL---QKMSD-----DPLATCPECGGE   35 (52)
T ss_pred             EEEEeCCCCCEeEEE---EecCC-----CCCCCCCCCCCC
Confidence            589999999888853   12222     355789999983

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=80.11  E-value=0.8  Score=40.34  Aligned_cols=50  Identities=18%  Similarity=0.544  Sum_probs=30.2

Q ss_pred             cceecCCCCCccch--HHHhhhhh-----hcccC--------------CCcccccccccccccchhHhhhh
Q 027681           42 KACFPCPFCYLEIE--AHMICSHL-----QEEHC--------------FEMKNAVCPLCAANLGKDAAEHF   91 (220)
Q Consensus        42 r~~F~CPfC~ed~D--~~~Lc~H~-----~eeH~--------------~e~k~vVCPVCa~~vg~D~i~Hi   91 (220)
                      ..+|.||.|.+.+.  +...|-|.     -.+.-              ...+...||+|...++.+-+..+
T Consensus        16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi   86 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI   86 (193)
T ss_pred             CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence            45799999966333  44557772     32211              12345689999999876444333

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=80.03  E-value=0.9  Score=28.98  Aligned_cols=32  Identities=16%  Similarity=0.243  Sum_probs=19.9

Q ss_pred             ecCCCCCccchHHHhhhhhhcccCCCcccccccccccc
Q 027681           45 FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAAN   82 (220)
Q Consensus        45 F~CPfC~ed~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~   82 (220)
                      +.||.|+..|.+..--      .+.+...+.||.|...
T Consensus         3 ~~CP~C~~~~~v~~~~------~~~~~~~v~C~~C~~~   34 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQ------LGANGGKVRCGKCGHV   34 (38)
T ss_pred             EECCCCCCEEEeCHHH------cCCCCCEEECCCCCCE
Confidence            6799998765554322      1222346889999765

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	96.94
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	96.88
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	95.95
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	95.84
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	95.67
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	95.55
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	95.48
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	95.18
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	95.18
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	95.09
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	95.09
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	94.99
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	94.87
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	94.87
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	94.86
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	94.85
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	94.52
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	94.46
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	94.25
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	94.24
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	94.2
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	94.17
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	94.06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	93.94
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	93.83
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	93.64
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	93.62
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	93.62
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	93.49
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	93.22
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	93.03
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	92.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	92.57
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	92.55
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	92.55
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	91.93
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.88
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	91.34
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	91.2
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	91.15
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	90.82
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	90.55
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	90.47
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	90.35
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	90.2
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.18
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	90.07
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.77
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	89.74
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	89.67
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.57
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	89.47
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	89.38
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.16
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	89.1
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.08
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.01
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.0
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.94
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	88.86
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	88.74
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	88.74
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.55
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.35
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	88.34
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.31
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	88.3
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.29
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	88.24
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	88.23
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.21
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.11
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	88.08
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	87.93
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	87.9
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.84
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	87.82
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.69
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.5
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.48
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	87.47
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	87.43
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	87.39
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.36
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.33
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	87.32
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	87.29
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	87.21
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.85
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	86.79
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.75
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	86.63
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	86.39
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	86.37
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	86.34
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.21
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	86.19
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.17
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.84
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.78
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	85.73
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	85.51
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	85.47
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	85.44
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.44
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	85.38
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.11
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.05
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	84.92
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.7
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	84.39
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	84.38
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	84.33
2ect_A	78	Ring finger protein 126; metal binding protein, st	84.01
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	83.39
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	83.15
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	83.13
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	83.0
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	82.89
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	82.66
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	81.83
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	81.74
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	81.58
1paa_A	30	Yeast transcription factor ADR1; transcription reg	81.32
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	81.3
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	81.11
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.77
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	80.55

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.94  E-value=0.00064  Score=46.15  Aligned_cols=54  Identities=20%  Similarity=0.452  Sum_probs=44.2

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHAS   97 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~~   97 (220)
                      .|.|+.|+..| ....|..|+...|.-+.+.-.|++|....  ..++..|+...|+.
T Consensus        15 ~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A           15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            59999998855 46789999988888777888999999873  55899999777763

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=96.88  E-value=0.0008  Score=44.10  Aligned_cols=54  Identities=20%  Similarity=0.483  Sum_probs=43.9

Q ss_pred             ceecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        43 ~~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      ..|.|+.|+..| ....|..|....|....+.-.|++|....  ..++..|+...|+
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            369999999866 46789999988786667888999999874  4588999977775

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=95.95  E-value=0.0053  Score=38.79  Aligned_cols=51  Identities=20%  Similarity=0.308  Sum_probs=37.9

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCcccccccccccc--cchhHhhhhhhhcc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAAN--LGKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~--vg~D~i~Hit~QH~   96 (220)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|...  -..++..|+...|+
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRT-HTG-EKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHH-HHC-CCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CccCCCCcchhCChHHHHHHHHH-cCC-CCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            58999998855 56778899876 533 356789999986  35588999977664

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.84  E-value=0.0083  Score=41.46  Aligned_cols=47  Identities=19%  Similarity=0.480  Sum_probs=21.1

Q ss_pred             ecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhh
Q 027681           45 FPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHF   91 (220)
Q Consensus        45 F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hi   91 (220)
                      |.|+.|+..| ....|..|+...|....+.-.|++|...-  ..++..|+
T Consensus        36 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~   85 (95)
T 2yt9_A           36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI   85 (95)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHH
T ss_pred             CcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHH
Confidence            5555555433 33445555544332223444555555442  22455555

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.67  E-value=0.0075  Score=39.91  Aligned_cols=48  Identities=25%  Similarity=0.462  Sum_probs=38.4

Q ss_pred             ceecCCCCCccchHHHhhhhhhcccCCCccccccc-ccccc--cchhHhhhhhh
Q 027681           43 ACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCP-LCAAN--LGKDAAEHFMV   93 (220)
Q Consensus        43 ~~F~CPfC~ed~D~~~Lc~H~~eeH~~e~k~vVCP-VCa~~--vg~D~i~Hit~   93 (220)
                      -.|.|++|+..|....|..|...   ...++..|+ +|...  ...++..|++.
T Consensus         9 ~~~~C~~C~k~f~~~~L~~H~~~---~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            9 RTQPCTYCTKEFVFDTIQSHQYQ---CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CEEECSSSCCEEEHHHHHHHHHH---CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CCeeccccCCccCHHHHHHHHHH---cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            36999999998888889999876   456778999 99986  34488888843

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.55  E-value=0.012  Score=39.06  Aligned_cols=52  Identities=17%  Similarity=0.327  Sum_probs=40.0

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHAS   97 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~~   97 (220)
                      .|.|+.|+..| ....|..|+.. |.- .+.-.|++|....  ..++..|+...|+-
T Consensus         9 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C~~~f~~~~~L~~H~~~h~~~   63 (70)
T 1x5w_A            9 PEKCSECSYSCSSKAALRIHERI-HCT-DRPFKCNYCSFDTKQPSNLSKHMKKFHGD   63 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG-GCC-SCSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCEeCCCCCCccCCHHHHHHHHHHHhCC
Confidence            59999999865 46778899876 654 3567999999974  45889999776663

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.48  E-value=0.012  Score=39.68  Aligned_cols=53  Identities=17%  Similarity=0.327  Sum_probs=40.5

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCC--ccccccccccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFE--MKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e--~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      .|.|+.|+..| ....|..|+...|..+  .+.-.|++|....  ..++..|+...|+
T Consensus        15 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~   72 (86)
T 1x6h_A           15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAG   72 (86)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccC
Confidence            59999998855 4567889998767654  3668999999873  4588899866555

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.18  E-value=0.017  Score=42.03  Aligned_cols=49  Identities=20%  Similarity=0.384  Sum_probs=38.9

Q ss_pred             eecCCCCCccc--hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhc
Q 027681           44 CFPCPFCYLEI--EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   95 (220)
Q Consensus        44 ~F~CPfC~ed~--D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH   95 (220)
                      .|.|+.|++.|  ....|..|+.. |  ..+.-.|++|....  ..++..|+..-|
T Consensus        34 ~~~C~~C~k~F~~~~~~L~~H~~~-h--~~k~~~C~~Cgk~F~~~~~L~~H~~~~H   86 (96)
T 2ctd_A           34 SVSCPTCQAVGRKTIEGLKKHMEN-C--KQEMFTCHHCGKQLRSLAGMKYHVMANH   86 (96)
T ss_dssp             CEECTTTCSCEESSHHHHHHHHHH-H--CCCCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CcCCCCCCCCcccCHHHHHHHHHH-H--CCCCeECCCCCCeeCCHHHHHHHhHHhc
Confidence            59999999998  78899999876 6  55778999999874  458888943334

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.18  E-value=0.004  Score=44.59  Aligned_cols=53  Identities=17%  Similarity=0.270  Sum_probs=40.8

Q ss_pred             eecCCCCCccc--hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhccc
Q 027681           44 CFPCPFCYLEI--EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHAS   97 (220)
Q Consensus        44 ~F~CPfC~ed~--D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~~   97 (220)
                      .|.|+.|+..|  ....|..|+.. |.-..+.-.|++|....  ..++..|++..|+.
T Consensus        24 ~~~C~~C~k~f~~~~~~L~~H~~~-h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~   80 (98)
T 2gqj_A           24 EAVCPTCNVVTRKTLVGLKKHMEV-CQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA   80 (98)
T ss_dssp             CCCCTTTCCCCSSCSHHHHHHHHH-HHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCS
T ss_pred             CcCCCCCCCChhhhHHHHHHHHHH-HcCCCCCEECCCCCCccCCHHHHHHHHHHHcCC
Confidence            59999999877  57889999876 43334567999999874  45889999777663

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=95.09  E-value=0.013  Score=39.04  Aligned_cols=50  Identities=18%  Similarity=0.374  Sum_probs=30.1

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   95 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH   95 (220)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|...-  ..++..|++..+
T Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           29 PYPCQYCGKRFHQKSDMKKHTFI-HTG-EKPHKCQVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HHT-CCCEECTTTSCEESSHHHHHHHHHHHC
T ss_pred             CeeCCcCChhhCCHHHHHHHHHH-hcC-CCCCcCCCcchhhCChHHHHHHHHhhC
Confidence            47777777644 45667777664 322 2456777777653  346777765433

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.09  E-value=0.021  Score=38.48  Aligned_cols=52  Identities=17%  Similarity=0.291  Sum_probs=39.0

Q ss_pred             ceecCCCCCccch-HHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           43 ACFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        43 ~~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      ..|.|+.|+..|. ...|..|+.. |.. .+.-.|++|....  ..++..|+.+.++
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~   71 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRRT-HTG-EKPYKCDECGKAFIQRSHLIGHHRVHTG   71 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTT-TCC-SCSEECSSSCCEESSHHHHHHHGGGSCC
T ss_pred             CCEECCCCCcccCCHHHHHHHHHH-cCC-CcCeeCCCCCCccCCHHHHHHHHHHhCC
Confidence            3699999998664 6778899875 543 3567999999873  4588899866544

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.99  E-value=0.02  Score=38.18  Aligned_cols=51  Identities=16%  Similarity=0.303  Sum_probs=38.1

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      .|.|++|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+++.++
T Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A           14 PYGCVECGKAFSRSSILVQHQRV-HTG-EKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHG-GGC-SCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             CccCCCCCCccCCHHHHHHHHHh-cCC-CCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            59999999866 56778899876 543 4567999999874  4588899865443

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=94.87  E-value=0.025  Score=35.58  Aligned_cols=50  Identities=16%  Similarity=0.430  Sum_probs=37.5

Q ss_pred             ecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           45 FPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        45 F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      |.|+.|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+...++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRT-HTD-VRPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH-TSS-CCCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHh-cCC-CCCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            7899999865 56778899876 543 4567899999874  4588899865544

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=94.87  E-value=0.032  Score=39.27  Aligned_cols=52  Identities=17%  Similarity=0.379  Sum_probs=35.9

Q ss_pred             ceecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        43 ~~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      ..|.|++|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+...++
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   70 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHERT-HTD-ERPYTCDICHKAFRRQDHLRDHRYIHSK   70 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHHH-HCC-SCCCBCSSSCCBCSCHHHHHHHGGGSCC
T ss_pred             cCeECCCCCCccCCHHHHHHHHHH-cCC-CCCcCCCCccchhCCHHHHHHHHHHhCC
Confidence            468899998765 46678888775 332 3557899998864  4478888765444

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=94.86  E-value=0.031  Score=37.34  Aligned_cols=53  Identities=19%  Similarity=0.327  Sum_probs=39.2

Q ss_pred             cceecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           42 KACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        42 r~~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      ...|.|+.|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+++.++
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKTV-HTG-EKPYRCNICGAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHHH-HCC-CCSEECTTTCCEESCHHHHHHHHHHHCC
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHH-cCC-CCCEECCCCCchhCCHHHHHHHHHhcCC
Confidence            3469999999866 46778899875 543 3567899999874  4588899866544

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.85  E-value=0.027  Score=38.87  Aligned_cols=51  Identities=16%  Similarity=0.307  Sum_probs=34.3

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+...++
T Consensus         8 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   61 (96)
T 2dmd_A            8 PHKCEVCGKCFSRKDKLKTHMRC-HTG-VKPYKCKTCDYAAADSSSLNKHLRIHSD   61 (96)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGG-CCC-CCSEECSSSCCEESSHHHHHHHHHHSCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHh-cCC-CCCEeCCCCCCccCCHHHHHHHHHHhCC
Confidence            58888888755 45678888775 332 3456788888763  4477788865443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=94.52  E-value=0.037  Score=35.25  Aligned_cols=51  Identities=22%  Similarity=0.371  Sum_probs=37.5

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+...|.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRS-HTN-EKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT-TTS-SCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             cCcCCCCccccCCHHHHHHHHHH-hCC-CCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            48999998866 46788999876 543 3567899999874  4588888744443

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.46  E-value=0.027  Score=38.83  Aligned_cols=51  Identities=18%  Similarity=0.335  Sum_probs=39.4

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+...++
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   60 (95)
T 2yt9_A            7 GVACEICGKIFRDVYHLNRHKLS-HSG-EKPYSCPVCGLRFKRKDRMSYHVRSHDG   60 (95)
T ss_dssp             CEECSSSCCEESSSHHHHHHHHH-SCS-SCSEECSSSCCEESCHHHHHHHHHHHCC
T ss_pred             CeECCCCCCccCChHHHHHHHHh-cCC-CCCCcCCCCCCccCCHHHHHHHHHHhcC
Confidence            69999999866 46789999876 533 3567899999874  4589999977665

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=94.25  E-value=0.038  Score=40.52  Aligned_cols=50  Identities=24%  Similarity=0.623  Sum_probs=37.9

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHAS   97 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~~   97 (220)
                      .|.|+.|+..|. ...|..|+.. |   .++-.|++|...-  ..++..|++..|+-
T Consensus        74 ~~~C~~C~k~f~~~~~l~~H~~~-H---~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           74 QFVCPLCLMPFSSSVSLKQHIRY-T---EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHH-T---CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CeECCCCCcccCCHhHHHHHHHH-C---CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            589999998664 5668888876 5   4556899999874  55888999777763

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=94.24  E-value=0.049  Score=40.93  Aligned_cols=57  Identities=18%  Similarity=0.279  Sum_probs=42.8

Q ss_pred             CccceecCCCCCccc-hHHHhhhhhhcccCCCccc-------cccccccccc--chhHhhhhhhhcc
Q 027681           40 DVKACFPCPFCYLEI-EAHMICSHLQEEHCFEMKN-------AVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        40 d~r~~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~-------vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      +....|+|+.|+..| ....|..|+...|..+...       -.|++|....  ..++..|+...++
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   87 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG   87 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHC
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCC
Confidence            445679999999866 5678999999888876432       4799999874  4478889865444

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.20  E-value=0.034  Score=38.35  Aligned_cols=51  Identities=16%  Similarity=0.357  Sum_probs=38.5

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+.+.|+
T Consensus        36 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   89 (96)
T 2dmd_A           36 PYKCKTCDYAAADSSSLNKHLRI-HSD-ERPFKCQICPYASRNSSQLTVHLRSHTG   89 (96)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-SCC-CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CEeCCCCCCccCCHHHHHHHHHH-hCC-CCCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            59999998855 56788899876 433 3567899999863  4588999866554

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.17  E-value=0.014  Score=40.78  Aligned_cols=48  Identities=27%  Similarity=0.453  Sum_probs=38.9

Q ss_pred             ceecCCCCCccchHHHhhhhhhcccCCCccccccccccccc-chhHhhhhhh
Q 027681           43 ACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL-GKDAAEHFMV   93 (220)
Q Consensus        43 ~~F~CPfC~ed~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v-g~D~i~Hit~   93 (220)
                      -.+.|+||+..|-...|-.|.  .|+- .++..||.|...+ ..++..|+.+
T Consensus        16 r~~~C~~C~~~~~~~~L~~H~--~~c~-~~~~~C~~C~~~~~~~~l~~H~~~   64 (75)
T 2d9k_A           16 RLAVCQHCDLELSILKLKEHE--DYCG-ARTELCGNCGRNVLVKDLKTHPEV   64 (75)
T ss_dssp             CCEECSSSCCEECHHHHHHHH--HHHH-HCEEECSSSCCEEETTGGGTHHHH
T ss_pred             cccCCcccChHhhHHHHHHHH--hHcC-CCceEcccCCCcCcHHHHHHHHHH
Confidence            368999999999999999997  4654 5778999999864 4588888844

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=94.06  E-value=0.051  Score=38.23  Aligned_cols=52  Identities=17%  Similarity=0.315  Sum_probs=38.5

Q ss_pred             ceecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        43 ~~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      ..|.|+.|+..| ....|..|+.. |.- .+.-.|++|....  ..++..|+++.++
T Consensus        44 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~   98 (106)
T 2ee8_A           44 RPYTCDICHKAFRRQDHLRDHRYI-HSK-EKPFKCQECGKGFCQSRTLAVHKTLHMQ   98 (106)
T ss_dssp             CCCBCSSSCCBCSCHHHHHHHGGG-SCC-CCTTSCSSSCCCCSSHHHHHHHHHHTTS
T ss_pred             CCcCCCCccchhCCHHHHHHHHHH-hCC-CCCeECCCcCCcccCHHHHHHHHHHhCC
Confidence            359999998865 56788999776 433 3567899999874  4588899865444

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=93.94  E-value=0.055  Score=38.62  Aligned_cols=53  Identities=15%  Similarity=0.300  Sum_probs=33.5

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccC-CCccccccccccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHC-FEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~-~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      .|.|+.|+..| ....|..|+...|. ...+.-.|++|....  ..++..|+...++
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (124)
T 2dlq_A           35 PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG   91 (124)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             CeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCC
Confidence            47788887644 56677778776432 234556788887763  3467777755444

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=93.83  E-value=0.038  Score=38.10  Aligned_cols=54  Identities=20%  Similarity=0.507  Sum_probs=38.1

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhccchh
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHASSL   99 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~~~f   99 (220)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|...-  ..++..|+...|+..+
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   59 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRHRDIQHILPI   59 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH-HHC-CCCEECTTTCCEESSHHHHHHHHHHHTHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHH-cCC-CCCccCCCCCCccCCHHHHHHHHHHhCCCcc
Confidence            48899998755 45678888775 543 3456899998863  4588888888776444

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.64  E-value=0.031  Score=37.58  Aligned_cols=53  Identities=17%  Similarity=0.354  Sum_probs=39.2

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCC--Cccccccccccccc--chhHhhhhhhhccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCF--EMKNAVCPLCAANL--GKDAAEHFMVQHAS   97 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~--e~k~vVCPVCa~~v--g~D~i~Hit~QH~~   97 (220)
                      .|.|+.|+..| ....|..|+.. |.-  ..+.-.|++|....  ..++..|+...|..
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            7 GLQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTT
T ss_pred             CeECCCCCCeeCCHHHHHHHHHH-hhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCC
Confidence            58999999866 45678889766 433  24667999999874  45888998666653

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.62  E-value=0.087  Score=36.27  Aligned_cols=55  Identities=18%  Similarity=0.272  Sum_probs=40.1

Q ss_pred             cceecCCCCCccc-hHHHhhhhhhcccCCCccc-------cccccccccc--chhHhhhhhhhcc
Q 027681           42 KACFPCPFCYLEI-EAHMICSHLQEEHCFEMKN-------AVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        42 r~~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~-------vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      ...|+|+.|+..| ....|..|+...|.-+...       -.|++|....  ..++..|+++.++
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~   87 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG   87 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHT
T ss_pred             cCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCC
Confidence            3467899998866 4678899988767665321       5899999874  4588899866443

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=93.62  E-value=0.049  Score=36.97  Aligned_cols=50  Identities=18%  Similarity=0.500  Sum_probs=29.0

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   95 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH   95 (220)
                      .|.|++|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+.+.+
T Consensus        34 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~   86 (90)
T 1a1h_A           34 PFQCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRHTKIHL   86 (90)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH-HHC-CCCEECTTTCCEESSHHHHHHHHGGGG
T ss_pred             CccCCCCCcccCCHHHHHHHHHH-cCC-CCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            47777776644 34556677654 332 2445677777653  346677765443

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=93.49  E-value=0.055  Score=38.62  Aligned_cols=52  Identities=21%  Similarity=0.423  Sum_probs=39.2

Q ss_pred             ceecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        43 ~~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      ..|.|++|+..| ....|..|+.. |.- .++-.|++|....  ..++..|+...|+
T Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           65 QVFTCSVCQETFRRRMELRLHMVS-HTG-EMPYKCSSCSQQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH-HSS-SCSEECSSSCCEESSHHHHHHHHHHTSS
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH-cCC-CCCccCCCccchhCCHHHHHHHHHHHCC
Confidence            469999998855 46778899876 433 3567899999874  4589999966665

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=93.22  E-value=0.054  Score=35.98  Aligned_cols=50  Identities=20%  Similarity=0.537  Sum_probs=37.5

Q ss_pred             ecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           45 FPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        45 F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      |.|+.|+..| ....|..|+.. |. ..+.-.|++|....  ..++..|+...++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~-h~-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLI-HS-DTRPYPCQYCGKRFHQKSDMKKHTFIHTG   54 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHH-HH-TCCCEECSSSCCEESSHHHHHHHHHHHHT
T ss_pred             ccCCCCcccccCchhHHHHHHH-cC-CCCCeeCCcCChhhCCHHHHHHHHHHhcC
Confidence            7899998865 56778899886 43 24567899999874  4588899865544

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.03  E-value=0.11  Score=36.82  Aligned_cols=52  Identities=21%  Similarity=0.400  Sum_probs=35.3

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHAS   97 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~~   97 (220)
                      .|.|++|++.| ....|..|+.. |.- .+.-.|++|....  ..++..|++..|..
T Consensus        37 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           37 PYGCGVCGKKFKMKHHLVGHMKI-HTG-IKPYECNICAKRFMWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             SEECTTTSCEESSSHHHHHHHTT-TCC-CCCEECSSSCCEESCHHHHHHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHHH-cCC-CCCeeCCCCcchhcCHHHHHHHHHHcccc
Confidence            48888887754 34677788765 433 2456888888863  45788888665554

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=92.93  E-value=0.09  Score=37.85  Aligned_cols=49  Identities=22%  Similarity=0.495  Sum_probs=30.0

Q ss_pred             eecCC--CCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhc
Q 027681           44 CFPCP--FCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   95 (220)
Q Consensus        44 ~F~CP--fC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH   95 (220)
                      .|.||  .|+..| +...|..|+.. |  ..+.-.|++|....  ..++..|+...+
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~-h--~~~~~~C~~C~~~f~~~~~l~~H~~~h~   58 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLHT-H--GPRVHVCAECGKAFVESSKLKRHQLVHT   58 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHGG-G--SCCCEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             cccCCCCCCcCccCCHHHHHHHHHH-c--CCCCeECCCCCchhCCHHHHHHHHHHcC
Confidence            46777  677655 45567777653 5  44556777777653  346667765433

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=92.57  E-value=0.057  Score=40.31  Aligned_cols=51  Identities=25%  Similarity=0.459  Sum_probs=33.8

Q ss_pred             eecCCC--CCccc-hHHHhhhhhhcccCCCcccccccc--ccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPf--C~ed~-D~~~Lc~H~~eeH~~e~k~vVCPV--Ca~~v--g~D~i~Hit~QH~   96 (220)
                      .|.|++  |+..| ....|..|+.. |.. .+.-.|++  |....  ..++..|+...|.
T Consensus        67 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  124 (155)
T 2gli_A           67 PHKCTFEGCRKSYSRLENLKTHLRS-HTG-EKPYMCEHEGCSKAFSNASDRAKHQNRTHS  124 (155)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHH-TTT-CCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CccCCCCCCCCcccCHHHHHHHHHH-cCC-CCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            488886  87744 45678888875 433 35568888  88763  4477888744443

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=92.55  E-value=0.1  Score=37.84  Aligned_cols=52  Identities=21%  Similarity=0.351  Sum_probs=39.9

Q ss_pred             ceecCCCCCccch-HHHhhhhhhcccCCCcccccccccccc--cchhHhhhhhhhcc
Q 027681           43 ACFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLCAAN--LGKDAAEHFMVQHA   96 (220)
Q Consensus        43 ~~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVCa~~--vg~D~i~Hit~QH~   96 (220)
                      ..|.||.|+..|. ...|..|+.. |.- .++-.|++|...  -..++.+|+...|.
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~-H~~-~k~~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRL-LHA-AQVFPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHT-TSC-SSSEECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhh-ccC-CCccCCCCCCCEeCCHHHHHHhCcccCc
Confidence            3699999999765 5789999876 543 467799999997  45689999855554

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=92.55  E-value=0.089  Score=33.41  Aligned_cols=39  Identities=13%  Similarity=0.311  Sum_probs=30.1

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL   83 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v   83 (220)
                      .|.|+.|+..| ....|..|+...|.- .+.-.|++|...-
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~~H~~-~k~~~C~~C~k~F   51 (54)
T 2eps_A           12 PYICQSCGKGFSRPDHLNGHIKQVHTS-ERPHKCQVWVSGP   51 (54)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTSCC-CCCCCSSSSCCSS
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC-CCCccCCCCCCCC
Confidence            59999999866 567788998766765 3567899998653

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=91.93  E-value=0.085  Score=37.45  Aligned_cols=45  Identities=24%  Similarity=0.454  Sum_probs=34.5

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhh
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFM   92 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit   92 (220)
                      .|.|+.|+..| ....|..|+.. |   .+.-.|++|....  ..++..|++
T Consensus        16 ~~~C~~C~~~f~~~~~l~~H~~~-H---~~~~~C~~C~~~f~~~~~l~~H~~   63 (107)
T 1wjp_A           16 VYQCRLCNAKLSSLLEQGSHERL-C---RNAAVCPYCSLRFFSPELKQEHES   63 (107)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-H---HHSBCCTTTCCCBSSHHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHHHH-C---CCCccCCCCCCccCCHHHHHHHHH
Confidence            59999998865 56678888876 5   3677899999874  457888883

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.88  E-value=0.12  Score=31.17  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=25.5

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|... |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~C   46 (46)
T 2ytn_A           12 PYKCNECGKVFTQNSHLARHRGI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHGGG-TSCC-CCCSCCCC
T ss_pred             CeECCCCCCeeCCHHHHHHHhhh-cCCC-CCCCCCCC
Confidence            59999998855 45678888754 6543 67789998

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=91.34  E-value=0.14  Score=36.37  Aligned_cols=50  Identities=22%  Similarity=0.462  Sum_probs=37.3

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      .|.|+.|+..| ....|..|+.  |.- .+.-.|++|....  ..++..|+...|.
T Consensus        42 ~~~C~~C~~~f~~~~~l~~H~~--H~~-~~~~~C~~C~~~f~~~~~L~~H~~~~H~   94 (107)
T 1wjp_A           42 AAVCPYCSLRFFSPELKQEHES--KCE-YKKLTCLECMRTFKSSFSIWRHQVEVHN   94 (107)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHH--HCS-TGGGEEGGGTEECSSHHHHHHHHHHTSC
T ss_pred             CccCCCCCCccCCHHHHHHHHH--cCC-CCCccCccccchhCCHHHHHHHHHHHcC
Confidence            58999998855 4677889983  654 4667999999874  4588999854443

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.20  E-value=0.17  Score=30.41  Aligned_cols=35  Identities=17%  Similarity=0.081  Sum_probs=26.4

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|+...|.-+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~-k~~~C~~C   47 (47)
T 2epx_A           12 PYECIECGKAFIQNTSLIRHWRYYHTGE-KPSGPSSG   47 (47)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHHTTTTTTS-CSSSCCCC
T ss_pred             CEECCccCchhCChHHHHHHhHhhcCCC-CCCCCCCC
Confidence            599999988654 577888987457543 56789988

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.15  E-value=0.11  Score=37.13  Aligned_cols=52  Identities=13%  Similarity=0.105  Sum_probs=32.2

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcc-cCCCccccccccccccc----chhHhhhhhhhc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEE-HCFEMKNAVCPLCAANL----GKDAAEHFMVQH   95 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~ee-H~~e~k~vVCPVCa~~v----g~D~i~Hit~QH   95 (220)
                      .|.|+.|+..| ....|..|+... |..+.....|++|....    ..++..|+.+.+
T Consensus        19 ~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~   76 (115)
T 2dmi_A           19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED   76 (115)
T ss_dssp             SEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCC
T ss_pred             CEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccC
Confidence            48899998755 456788887751 32233334588887643    346777775433

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=90.82  E-value=0.027  Score=38.83  Aligned_cols=51  Identities=12%  Similarity=0.084  Sum_probs=40.1

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHAS   97 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~~   97 (220)
                      .|.|+.|+..| ....|..|+...|.   ...+|+.|....  ..++..|+...|+.
T Consensus        31 ~~~C~~C~k~f~~~~~L~~H~~~h~~---~~~~c~~C~~~f~~~~~L~~H~~~~h~~   84 (88)
T 1llm_C           31 PFACDICGRKFARSDERKRHRDIQHI---LPILEDKVEELLSKNYHLENEVARLKKL   84 (88)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhCC---CcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            59999999866 56889999998873   678999998864  44788999665553

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.55  E-value=0.16  Score=30.67  Aligned_cols=34  Identities=18%  Similarity=0.114  Sum_probs=25.7

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~c   46 (46)
T 2eq0_A           12 PYKCHECGKVFRRNSHLARHQLI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHTT-TCCC-CCSCCSCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            59999999865 45678888765 6554 66789998

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=90.47  E-value=0.18  Score=30.97  Aligned_cols=37  Identities=14%  Similarity=0.108  Sum_probs=27.8

Q ss_pred             ceecCCCCCccc-hHHHhhhhhhcccCCCccccccccccc
Q 027681           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAA   81 (220)
Q Consensus        43 ~~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~   81 (220)
                      ..|.|+.|+..| ....|..|+.. |.- .++-.|++|..
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C~k   48 (48)
T 2epr_A           11 KQVACEICGKIFRDVYHLNRHKLS-HSG-EKPYSSGPSSG   48 (48)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG-SCS-CCCCCSCCCCC
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHh-cCC-CCCccCCCCCC
Confidence            369999999866 56778899765 644 36678999963

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=90.35  E-value=0.18  Score=34.20  Aligned_cols=48  Identities=25%  Similarity=0.437  Sum_probs=37.8

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCcccccccccccc--cchhHhhhhhh
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLCAAN--LGKDAAEHFMV   93 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVCa~~--vg~D~i~Hit~   93 (220)
                      -|.|+.|+..|. ...|..|... |.- .++-.|++|...  -..++..|+++
T Consensus         4 py~C~~C~k~F~~~~~L~~H~~~-Ht~-ekp~~C~~C~k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHRRA-HLG-YRPRSCPECGKCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHH-HHT-CCCEECTTTCCEESSHHHHHHHGGG
T ss_pred             CccCCCCCCEeCCHHHHHHHHHH-hCC-CcCeECCCCCCCcCCHHHHHHHhCc
Confidence            489999999764 5678899865 754 467799999997  45689999865

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=90.20  E-value=0.26  Score=29.63  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=25.6

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em0_A           12 TWKCRECDMCFSQASSLRLHQNV-HVG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHGGG-GSS-SSCSCSSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCcCCCCC
Confidence            59999998855 45678889765 654 366789998

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=90.18  E-value=0.16  Score=30.57  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=25.6

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~c   46 (46)
T 2ema_A           12 RYKCNECGKVFSRNSQLSQHQKI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTG-GGCC-CCCSSSCC
T ss_pred             CcCCCCCcchhCCHHHHHHHHHh-cCCC-CCCCCCCC
Confidence            59999999865 45678888765 6543 66789998

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=90.07  E-value=0.29  Score=33.63  Aligned_cols=55  Identities=16%  Similarity=0.360  Sum_probs=35.4

Q ss_pred             CccceecCCC--CCccc-hHHHhhhhhhcccCCCccccccc--cccccc--chhHhhhhhhhcc
Q 027681           40 DVKACFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCP--LCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        40 d~r~~F~CPf--C~ed~-D~~~Lc~H~~eeH~~e~k~vVCP--VCa~~v--g~D~i~Hit~QH~   96 (220)
                      +.+..|.|++  |+..| ....|..|+.. |.. .+.-.||  +|....  ..++..|+...++
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   72 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTG-EKPYKCTWEGCDWRFARSDELTRHYRKHTG   72 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHH-HSC-CCCEECCSSSCCCEESSHHHHHHHHHHHTS
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHH-hCC-CCCeeCCCCCCCCccCCHHHHHHHHHHhCC
Confidence            3445788887  87755 56777888775 432 3456786  587753  4477788765544

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.77  E-value=0.15  Score=30.77  Aligned_cols=34  Identities=15%  Similarity=0.096  Sum_probs=25.5

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~c   46 (46)
T 2ytk_A           12 PYKCNECGKVFTQNSHLTNHWRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HSS-SSCSSCCCC
T ss_pred             CEeCCcCCCccCCHHHHHHHHHH-HCC-CCCCCCCCC
Confidence            599999998654 5678888764 644 366789998

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=89.74  E-value=0.23  Score=29.82  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=25.4

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|- ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2el4_A           12 PYGCSQCAKTFSLKSQLIVHQRS-HTG-VKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHGGG-SSS-CCCSCCTTC
T ss_pred             ceECCCCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            499999998654 5678888765 654 456789998

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.67  E-value=0.28  Score=29.39  Aligned_cols=34  Identities=12%  Similarity=-0.024  Sum_probs=25.6

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2eop_A           12 PHECRECGKSFSFNSQLIVHQRI-HTG-ENPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTT-TTT-SCCSCCCCC
T ss_pred             CeeCCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            59999998855 45678889765 654 356789998

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.57  E-value=0.2  Score=30.22  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=25.4

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|... |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~C   46 (46)
T 2eoq_A           12 PFKCDICGKSFCGRSRLNRHSMV-HTAE-KPSGPSSG   46 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHH-TTCC-CSSSCCCC
T ss_pred             CcCCCcCCchhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            59999998865 45678888764 6543 66789988

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=89.47  E-value=0.29  Score=32.38  Aligned_cols=52  Identities=25%  Similarity=0.537  Sum_probs=38.7

Q ss_pred             eecCCC--CCccc-hHHHhhhhhhcccCCCcccccccc--ccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPf--C~ed~-D~~~Lc~H~~eeH~~e~k~vVCPV--Ca~~v--g~D~i~Hit~QH~   96 (220)
                      .|+|++  |+..| ....|..|+...|.. .+.-.|++  |....  ..++..|+.+.++
T Consensus         7 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~-~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~   65 (79)
T 2dlk_A            7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIH-QKSFSCPEPACGKSFNFKKHLKEHMKLHSD   65 (79)
T ss_dssp             SEECSSTTTCCEESSHHHHHHHHHHGGGS-CCCEECSCTTTCCEESSHHHHHHHHHHHHT
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHHhCC-CCCeECCCCCCcCccCCHHHHHHHHHHhCC
Confidence            478887  98866 567889998866765 46678998  99863  4588899865443

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.38  E-value=0.15  Score=34.53  Aligned_cols=48  Identities=21%  Similarity=0.466  Sum_probs=28.8

Q ss_pred             CCccceecCCCCCccchHHH--hhhh-----hhcccCCC-cccccccccccccchh
Q 027681           39 DDVKACFPCPFCYLEIEAHM--ICSH-----LQEEHCFE-MKNAVCPLCAANLGKD   86 (220)
Q Consensus        39 dd~r~~F~CPfC~ed~D~~~--Lc~H-----~~eeH~~e-~k~vVCPVCa~~vg~D   86 (220)
                      +++...+.||.|.+.+....  -|-|     |...+-.. .....||+|...+..+
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            45667899999977555321  2333     33322221 3456899999887543

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.16  E-value=0.26  Score=29.74  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=25.6

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2emf_A           12 HFECTECGKAFTRKSTLSMHQKI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESCHHHHHHHGGG-TSC-SSCSCCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999998664 5678888765 643 466789998

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=89.10  E-value=0.25  Score=36.88  Aligned_cols=47  Identities=23%  Similarity=0.468  Sum_probs=36.5

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccC--CCccccccccccccc--chhHhhh
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHC--FEMKNAVCPLCAANL--GKDAAEH   90 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~--~e~k~vVCPVCa~~v--g~D~i~H   90 (220)
                      .|.|+.|+..| ....|..|+...|.  ...++-.|++|...-  ..++..|
T Consensus        18 py~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H   69 (102)
T 2ghf_A           18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH   69 (102)
T ss_dssp             SEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTH
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHH
Confidence            59999999866 46778999876675  335678999999863  5578888

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.08  E-value=0.26  Score=29.54  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=25.5

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|... |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~C   46 (46)
T 2eov_A           12 PYKCSDCGKSFTWKSRLRIHQKC-HTGE-RHSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHHH-HSCC-SSCCSCCC
T ss_pred             CccCCccChhhCCHHHHHHHHHh-cCCC-CCCCCCCC
Confidence            599999988554 5778889754 6543 66789988

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.01  E-value=0.29  Score=29.43  Aligned_cols=34  Identities=15%  Similarity=0.098  Sum_probs=25.7

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ene_A           12 PYKCNECGKVFRHNSYLSRHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TCC-CCCCSCCCC
T ss_pred             CeECCCCCchhCChHHHHHHHhh-cCC-CCCCCCCCC
Confidence            599999998654 5678889765 654 366789988

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.00  E-value=0.26  Score=29.53  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=25.4

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-~~~~C~~C   46 (46)
T 2eoe_A           12 PYKCNECGKVFTQNSHLANHQRI-HTGV-KPSGPSSG   46 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHGG-GSCC-CSCSSCCC
T ss_pred             CeECCCcChhhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            59999998855 45678888754 6544 66789998

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.94  E-value=0.3  Score=29.37  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=25.6

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~c   46 (46)
T 2ep2_A           12 PYECSICGKSFTKKSQLHVHQQI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHT-TSSC-CSCCSCCC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHH-hCCC-CCCCCCCC
Confidence            59999998855 45678889764 6543 66789988

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=88.86  E-value=0.27  Score=32.58  Aligned_cols=50  Identities=18%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             ecC--CCCCccc-hHHHhhhhhhcccCCCcccccccc--ccccc--chhHhhhhhhhcc
Q 027681           45 FPC--PFCYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        45 F~C--PfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPV--Ca~~v--g~D~i~Hit~QH~   96 (220)
                      |.|  +.|+..| ....|..|+.. |.. .++-.|++  |....  ..++..|+...++
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQFS-HTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH-HHT-TCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHH-hCC-CCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            667  6687755 35667777654 433 24567877  77653  4467777766555

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=88.74  E-value=0.19  Score=30.27  Aligned_cols=35  Identities=20%  Similarity=0.392  Sum_probs=26.3

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCcccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCA   80 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa   80 (220)
                      .|.|+.|+..| ....|..|+.. |.- .+.-.||+|.
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~-H~~-~~~~~C~~cg   45 (45)
T 2epq_A           10 PYSCPVCGLRFKRKDRMSYHVRS-HDG-SVGKSGPSSG   45 (45)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHH-HSC-CCCCCCCCCC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH-ccC-CCCCCCcCCC
Confidence            58999998865 56778888766 544 4567899983

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=88.74  E-value=0.23  Score=38.10  Aligned_cols=49  Identities=18%  Similarity=0.356  Sum_probs=31.9

Q ss_pred             ceecCCCCCccc-hHHHhhhhhhcccCCCcccccccccccc--cchhHhhhhhh
Q 027681           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAAN--LGKDAAEHFMV   93 (220)
Q Consensus        43 ~~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~--vg~D~i~Hit~   93 (220)
                      -.|.|+.|+..| ....|..|+.. |.- .++-.|++|...  -..++..|+.+
T Consensus        21 k~y~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C~k~F~~~~~L~~H~~~   72 (133)
T 2lt7_A           21 VYYICIVCKRSYVCLTSLRRHFNI-HSW-EKKYPCRYCEKVFPLAEYRTKHEIH   72 (133)
T ss_dssp             EEEEETTTCCEESCHHHHHHHHHH-HHC-CSCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCeECCCCCCCcCCHHHHHHHHHH-cCC-CCCeeCCccCeecccccchhhhccc
Confidence            458888887754 45667778753 643 345678888775  34467777754

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.55  E-value=0.31  Score=29.32  Aligned_cols=34  Identities=15%  Similarity=0.101  Sum_probs=25.5

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|++|+..|. ...|..|... |.- .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2ytj_A           12 PYICAECGKAFTIRSNLIKHQKI-HTK-QKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-TSC-CCCSSCSCC
T ss_pred             CeECCCCChhhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999998654 5678888765 654 466789988

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.35  E-value=0.27  Score=29.54  Aligned_cols=34  Identities=18%  Similarity=0.132  Sum_probs=25.4

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|- ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emy_A           12 PYECHECGKAFSRKYQLISHQRT-HAG-EKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HTT-SCCSCSSCC
T ss_pred             CcCCCCCCcccCcHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999988554 5678888765 654 366789988

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.34  E-value=0.34  Score=29.10  Aligned_cols=34  Identities=18%  Similarity=0.033  Sum_probs=25.3

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|+.. |.- .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2epz_A           12 PFDCIDCGKAFSDHIGLNQHRRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHTT-TTT-CCCCSSCCC
T ss_pred             CeECCCCCceeCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999988654 5678888764 644 366789988

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.31  E-value=0.17  Score=30.47  Aligned_cols=34  Identities=15%  Similarity=0.110  Sum_probs=25.1

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2emh_A           12 PYICTVCGKAFTDRSNLIKHQKI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHH-HHC-SSCSSSCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            599999998554 4678888764 654 366789988

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=88.30  E-value=0.24  Score=38.38  Aligned_cols=51  Identities=18%  Similarity=0.382  Sum_probs=34.7

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      .|.|+.|+..| ....|..|+...+.  .+.-.|++|...-  ..++..|+...++
T Consensus       105 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~L~~H~~~H~~  158 (190)
T 2i13_A          105 PYACPECGKSFSQLAHLRAHQRTHTG--EKPYKCPECGKSFSREDNLHTHQRTHTG  158 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHC--CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhCC--CCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            48889998755 45668888765332  3456788888863  4478888866554

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=88.29  E-value=0.24  Score=29.91  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=25.1

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|- ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emk_A           12 PYECKECGKAFSQTTHLIQHQRV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHHH-HSS-CCCSSCCCC
T ss_pred             ceECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            499999988554 5668888765 654 367789988

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1

Probab=88.24  E-value=0.21  Score=37.38  Aligned_cols=45  Identities=24%  Similarity=0.545  Sum_probs=29.8

Q ss_pred             CccCccccCCC-ccceecCCCCCc--cchHHHhhhhhhcccCCCccccccccccccc
Q 027681           30 SIVDETEIDDD-VKACFPCPFCYL--EIEAHMICSHLQEEHCFEMKNAVCPLCAANL   83 (220)
Q Consensus        30 ~~~de~e~ddd-~r~~F~CPfC~e--d~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v   83 (220)
                      +.++|++-|++ ....|+|| |+.  .+....|-..        .--+.||-|+-.+
T Consensus        15 v~LeDm~~de~~~~y~y~Cr-CGd~F~it~edL~~g--------e~iv~C~sCSL~I   62 (83)
T 1wge_A           15 VEIEDFQYDEDSETYFYPCP-CGDNFAITKEDLENG--------EDVATCPSCSLII   62 (83)
T ss_dssp             EEGGGSCCBTTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEECTTTCCEE
T ss_pred             EEHHHceEccCCCEEEEeCC-CCCEEEECHHHHhCC--------CEEEECCCCceEE
Confidence            34567765433 45689999 975  6666666432        1258899999875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=88.23  E-value=0.31  Score=32.86  Aligned_cols=51  Identities=20%  Similarity=0.482  Sum_probs=37.2

Q ss_pred             eecCCC--CCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPf--C~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      .|.||+  |+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+...++
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   59 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRI-HTG-QKPFQCRICMRNFSRSDHLTTHIRTHTG   59 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHH-HHC-CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHH-hCC-CCCccCCCCCcccCCHHHHHHHHHHcCC
Confidence            589995  98866 46778899875 432 3567999999874  4588899865544

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.21  E-value=0.28  Score=29.51  Aligned_cols=34  Identities=18%  Similarity=0.093  Sum_probs=25.3

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytg_A           12 PFKCGECGKSYNQRVHLTQHQRV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSSHHHHTTGGG-GSS-CCSSCSCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999998654 4678888754 654 356789988

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=88.11  E-value=0.4  Score=28.68  Aligned_cols=34  Identities=18%  Similarity=0.139  Sum_probs=25.7

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em9_A           12 PYNCKECGKSFRWASCLLKHQRV-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGGG-GTS-CCCCSTTCC
T ss_pred             CeECCccccccCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999998654 5778889765 654 356789988

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=88.08  E-value=0.36  Score=32.44  Aligned_cols=21  Identities=19%  Similarity=0.531  Sum_probs=9.4

Q ss_pred             eecCCC--CCccc-hHHHhhhhhh
Q 027681           44 CFPCPF--CYLEI-EAHMICSHLQ   64 (220)
Q Consensus        44 ~F~CPf--C~ed~-D~~~Lc~H~~   64 (220)
                      .|.|++  |+..| ....|..|+.
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~   28 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLR   28 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHT
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHH
Confidence            345555  54433 2334444444

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.93  E-value=0.42  Score=28.77  Aligned_cols=34  Identities=15%  Similarity=0.164  Sum_probs=25.5

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytq_A           12 PYGCSECGKAFSSKSYLIIHMRT-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHTT-TCC-SCSSCCCCC
T ss_pred             CcCCCccChhhCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            48999998855 45778889765 654 366789988

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=87.90  E-value=0.49  Score=31.77  Aligned_cols=48  Identities=17%  Similarity=0.423  Sum_probs=35.0

Q ss_pred             ceecCCC--CCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhh
Q 027681           43 ACFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFM   92 (220)
Q Consensus        43 ~~F~CPf--C~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit   92 (220)
                      ..|.||+  |+..| ....|..|+.. |..+ +.-.|++|....  ..++..|+.
T Consensus        34 ~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~-~~~~C~~C~~~f~~~~~l~~H~~   86 (89)
T 2wbs_A           34 KPYHCDWDGCGWKFARSDELTRHYRK-HTGH-RPFQCQKCDRAFSRSDHLALHMK   86 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHH-HHCC-CCEECSSSSCEESSHHHHHHHGG
T ss_pred             CCcCCCCCCCCCccCCHHHHHHHHHH-cCCC-CCccCCCCCcccCCHHHHHHHHH
Confidence            3599986  98866 56778899864 5443 567899999863  457888874

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.84  E-value=0.39  Score=28.94  Aligned_cols=34  Identities=15%  Similarity=0.033  Sum_probs=25.8

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em5_A           12 SHQCHECGRGFTLKSHLNQHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TSC-SCCSSCCCC
T ss_pred             CeECCcCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            59999999865 55778889755 644 456789998

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=87.82  E-value=0.31  Score=31.98  Aligned_cols=47  Identities=21%  Similarity=0.512  Sum_probs=34.3

Q ss_pred             eecCCC--CCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhh
Q 027681           44 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFM   92 (220)
Q Consensus        44 ~F~CPf--C~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit   92 (220)
                      .|.||+  |+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+.
T Consensus        19 ~~~C~~~~C~k~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           19 PYACPVESCDRRFSRSDELTRHIRI-HTG-QKPFQCRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             CEECSSTTBCCEESSHHHHHHHHHH-HHC-CCCEECTTTCCEESCHHHHHHHHT
T ss_pred             ccCCcCCCCCCccCCHHHHHHHHHh-hCC-CCCeECCCCCchhCCHHHHHHHHH
Confidence            599996  98855 45678889765 543 3557899999874  457888874

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.69  E-value=0.35  Score=28.97  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=25.1

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ytr_A           12 PYKCNECGKAFSQTSKLARHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             TTCCTTTCCCCSSHHHHHHHHTT-TTT-CSCCCSCCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            48999998855 45678888765 654 356789988

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.50  E-value=0.43  Score=28.51  Aligned_cols=34  Identities=15%  Similarity=0.153  Sum_probs=25.4

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2eme_A           12 PYVCDYCGKAFGLSAELVRHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGG-GCC-CSCCSSCCC
T ss_pred             CeECCCCChhhCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            59999999865 45778889864 654 356789988

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.48  E-value=0.39  Score=28.80  Aligned_cols=34  Identities=21%  Similarity=0.132  Sum_probs=25.7

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|... |.- .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2enc_A           12 PFKCEECGKGFYTNSQCYSHQRS-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-SCC-SSCCSSCCC
T ss_pred             CcCCCCCCCcCCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            59999998855 45778889765 654 366789988

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}

Probab=87.47  E-value=0.22  Score=37.85  Aligned_cols=46  Identities=22%  Similarity=0.496  Sum_probs=30.3

Q ss_pred             CccCccccCC-CccceecCCCCCc--cchHHHhhhhhhcccCCCcccccccccccccc
Q 027681           30 SIVDETEIDD-DVKACFPCPFCYL--EIEAHMICSHLQEEHCFEMKNAVCPLCAANLG   84 (220)
Q Consensus        30 ~~~de~e~dd-d~r~~F~CPfC~e--d~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~vg   84 (220)
                      +.++|++-|+ +...+|+|| |+.  .+....|-..        .--+.||-|+-.+-
T Consensus         8 V~LeDm~~de~~~~y~ypCr-CGd~F~IteedLe~g--------e~iv~C~sCSL~Ik   56 (89)
T 2jr7_A            8 VEIEDFQYDEDSETYFYPCP-CGDNFSITKEDLENG--------EDVATCPSCSLIIK   56 (89)
T ss_dssp             EETTTSEEETTTTEEEEECT-TSSEEEEEHHHHHHT--------CCEEECTTTCCEEE
T ss_pred             EEHHHcEEcCCCCEEEEcCC-CCCEEEECHHHHhCC--------CEEEECCCCccEEE
Confidence            3456665433 345689999 975  6666667532        12588999999753

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=87.43  E-value=0.54  Score=34.87  Aligned_cols=52  Identities=19%  Similarity=0.189  Sum_probs=28.9

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCC-Ccccccccccc-----cc--cchhHhhhhhhhc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCF-EMKNAVCPLCA-----AN--LGKDAAEHFMVQH   95 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~-e~k~vVCPVCa-----~~--vg~D~i~Hit~QH   95 (220)
                      .|.|+.|+..| ....|..|+...|.. +.+.-+|++|.     ..  -...+..|+...+
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~   63 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT   63 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcC
Confidence            46777777654 456677777764432 23455666533     22  2335666665443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=87.39  E-value=0.35  Score=32.02  Aligned_cols=47  Identities=17%  Similarity=0.235  Sum_probs=35.6

Q ss_pred             eecCCC--CCccc-hHHHhhhhhhcccCCCcccccccc---cccc--cchhHhhhhhhhc
Q 027681           44 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPL---CAAN--LGKDAAEHFMVQH   95 (220)
Q Consensus        44 ~F~CPf--C~ed~-D~~~Lc~H~~eeH~~e~k~vVCPV---Ca~~--vg~D~i~Hit~QH   95 (220)
                      .|.||+  |++.| ....|..|+...+.     -.|++   |...  -..++..|+...|
T Consensus        31 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           31 PYECPHEGCDKRFSLPSRLKRHEKVHAG-----YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHS-----EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CeeCCCCCCcCccCCHHHHHHHHHHhCC-----CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            499999  98855 57788999877544     67999   9886  3558888986554

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.36  E-value=0.31  Score=29.26  Aligned_cols=34  Identities=24%  Similarity=0.203  Sum_probs=25.1

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~C   46 (46)
T 2en1_A           12 PFKCEECGKRFTQNSQLHSHQRV-HTGE-KPSGPSSG   46 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGG-GSCC-CCSCCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            599999988554 4667888765 6543 66789988

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.33  E-value=0.37  Score=28.85  Aligned_cols=34  Identities=15%  Similarity=0.032  Sum_probs=25.3

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|... |.- .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2en8_A           12 SHTCDECGKNFCYISALRIHQRV-HMG-EKCSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT-TCC-SCSSCCSCC
T ss_pred             CeECCCcCcccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            59999998866 45678888754 654 356789988

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.32  E-value=0.44  Score=28.48  Aligned_cols=34  Identities=18%  Similarity=0.124  Sum_probs=25.3

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2eq4_A           12 LYNCKECGKSFSRAPCLLKHERL-HSG-EKPSGPSSG   46 (46)
T ss_dssp             CCCBTTTTBCCSCHHHHHHHHHH-CCS-SSCCCCCCC
T ss_pred             CeECCCCCCccCchHHHHHHHHh-cCC-CCCCCCCCC
Confidence            499999988554 5678889765 654 366789988

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=87.29  E-value=0.48  Score=36.68  Aligned_cols=52  Identities=19%  Similarity=0.341  Sum_probs=29.7

Q ss_pred             eecCC--CCCcc-chHHHhhhhhhcccCCCcccccc--ccccccc--chhHhhhhhhhc
Q 027681           44 CFPCP--FCYLE-IEAHMICSHLQEEHCFEMKNAVC--PLCAANL--GKDAAEHFMVQH   95 (220)
Q Consensus        44 ~F~CP--fC~ed-~D~~~Lc~H~~eeH~~e~k~vVC--PVCa~~v--g~D~i~Hit~QH   95 (220)
                      .|.|+  .|+.. .....|..|+...|....+.-.|  ++|....  ..++..|+.+.+
T Consensus        72 ~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~  130 (190)
T 1tf6_A           72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT  130 (190)
T ss_dssp             CEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGS
T ss_pred             ceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhC
Confidence            36666  66653 34556666666666555555666  6666642  335666665433

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.21  E-value=0.34  Score=28.98  Aligned_cols=34  Identities=15%  Similarity=0.051  Sum_probs=25.5

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|- ...|..|... |.- .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2epw_A           12 PCKCTECGKAFCWKSQLIMHQRT-HVD-DKHSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHHHH-CCS-CCCSCCCCC
T ss_pred             CeeCCCCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            499999988654 5778888765 654 366789988

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.85  E-value=0.31  Score=29.30  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=25.6

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~C   46 (46)
T 2en6_A           12 PYGCNECGKTFSQKSILSAHQRT-HTGE-KPSGPSSG   46 (46)
T ss_dssp             CEEETTTTEEESSHHHHHHHHHH-HSSC-CCSSSCCC
T ss_pred             CeECCCCCcccCchHHHHHHHHH-cCCC-CCCCCCCC
Confidence            599999988554 5678889775 6543 66789988

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.79  E-value=0.29  Score=29.41  Aligned_cols=34  Identities=12%  Similarity=0.105  Sum_probs=25.1

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ytd_A           12 PYKCSECGKAFHRHTHLNEHRRI-HTG-YRPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HTC-CCSSCSSCC
T ss_pred             CeECCCCCCeeCChHHHHHHHHH-cCC-CCCCCCCCC
Confidence            499999988654 4668888654 654 356789988

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.75  E-value=0.5  Score=28.33  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=25.4

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|+.. |.- .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ep0_A           12 PYKCDVCHKSFRYGSSLTVHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TSS-SCCCSCCCC
T ss_pred             CeeCcccCcccCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            59999998855 45778889764 654 366789988

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=86.63  E-value=0.27  Score=33.77  Aligned_cols=49  Identities=14%  Similarity=0.288  Sum_probs=28.5

Q ss_pred             cCCCccceecCCCCCccchHHH--hhhhhhcccCC----Ccccccccccccccch
Q 027681           37 IDDDVKACFPCPFCYLEIEAHM--ICSHLQEEHCF----EMKNAVCPLCAANLGK   85 (220)
Q Consensus        37 ~ddd~r~~F~CPfC~ed~D~~~--Lc~H~~eeH~~----e~k~vVCPVCa~~vg~   85 (220)
                      |++++..+|.||.|.+.+....  -|-|.-...+.    +.....||+|...+..
T Consensus         1 g~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            1 GSPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             CCCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CCcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            4566788999999976554321  13332111111    2236789999988653

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=86.39  E-value=0.31  Score=33.30  Aligned_cols=47  Identities=21%  Similarity=0.531  Sum_probs=28.5

Q ss_pred             CCccceecCCCCCccchHHH-h-hhh-----hhcccCCC-----cccccccccccccch
Q 027681           39 DDVKACFPCPFCYLEIEAHM-I-CSH-----LQEEHCFE-----MKNAVCPLCAANLGK   85 (220)
Q Consensus        39 dd~r~~F~CPfC~ed~D~~~-L-c~H-----~~eeH~~e-----~k~vVCPVCa~~vg~   85 (220)
                      +++...+.||.|.+.+.... | |-|     |-.++-..     .....||+|...+..
T Consensus         7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            45666889999977555431 1 333     33333222     236789999998764

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=86.37  E-value=0.4  Score=37.14  Aligned_cols=51  Identities=18%  Similarity=0.346  Sum_probs=38.5

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      .|.||.|+..| ....|..|+...+.  .+.-.|++|....  ..++..|+...++
T Consensus        77 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~  130 (190)
T 2i13_A           77 PYKCPECGKSFSQRANLRAHQRTHTG--EKPYACPECGKSFSQLAHLRAHQRTHTG  130 (190)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHT--CCCEECTTTCCEESSHHHHHHHHHHHHC
T ss_pred             CccCcccCCccCCHHHHHHHHHhcCC--CCCCcCCCCCCccCCHHHHHHHHHHhCC
Confidence            59999998865 56788999876442  3557899999874  4578899876655

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.34  E-value=0.65  Score=27.90  Aligned_cols=34  Identities=15%  Similarity=0.030  Sum_probs=25.3

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|... |.- .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2elz_A           12 PYKCEDCGKGYNRRLNLDMHQRV-HMG-EKTSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHGGG-GGS-CCCCCSCCC
T ss_pred             CeeCcccCchhCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            599999988654 5678888764 643 456789988

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.21  E-value=0.58  Score=28.04  Aligned_cols=34  Identities=15%  Similarity=0.051  Sum_probs=25.4

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2em7_A           12 PYKCEECGKGFICRRDLYTHHMV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHGGG-GTT-CCCSSTTCC
T ss_pred             CccCCCccchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999988554 5678889765 643 466789988

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=86.19  E-value=0.39  Score=28.93  Aligned_cols=34  Identities=18%  Similarity=0.079  Sum_probs=25.3

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ely_A           12 PFKCVECGKGFSRRSALNVHHKL-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SBCCSSSCCCBSSTTHHHHHHHH-HSC-CSSCSCCCC
T ss_pred             CcccCccCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            589999988554 5678888765 543 466789988

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.17  E-value=0.36  Score=29.17  Aligned_cols=34  Identities=12%  Similarity=0.069  Sum_probs=24.9

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|- ...|..|+.. |.-+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~C   46 (46)
T 2ytm_A           12 PYKCMECGKAFGDNSSCTQHQRL-HTGQ-RPSGPSSG   46 (46)
T ss_dssp             SSSBTTTTBCCSSHHHHHHHHHH-HHSC-CCCCCCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            489999988554 5678888765 5443 56789988

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.84  E-value=0.45  Score=28.56  Aligned_cols=34  Identities=12%  Similarity=0.046  Sum_probs=25.6

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ysp_A           12 PYKCEKCGKGYNSKFNLDMHQKV-HTG-ERPSGPSSG   46 (46)
T ss_dssp             SEEETTTTEEESCHHHHHHHHTT-SCS-CCSSCCSCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHh-hCC-CCCCCCCCC
Confidence            599999998654 5678889765 654 456789988

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.78  E-value=0.58  Score=28.04  Aligned_cols=34  Identities=15%  Similarity=0.106  Sum_probs=24.8

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|++.|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~~   46 (46)
T 2ep3_A           12 PYRCAECGKAFTDRSNLFTHQKI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TTT-SCCCCTTCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999988554 5678888764 654 356789886

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A

Probab=85.73  E-value=0.3  Score=36.50  Aligned_cols=45  Identities=24%  Similarity=0.535  Sum_probs=29.9

Q ss_pred             CccCccccCCC-ccceecCCCCCc--cchHHHhhhhhhcccCCCccccccccccccc
Q 027681           30 SIVDETEIDDD-VKACFPCPFCYL--EIEAHMICSHLQEEHCFEMKNAVCPLCAANL   83 (220)
Q Consensus        30 ~~~de~e~ddd-~r~~F~CPfC~e--d~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v   83 (220)
                      +.++|++-|++ ..-.|+|| |+.  .+....|...        ---+.||-|+-.+
T Consensus         8 v~leDm~~de~~~~y~ypCr-CGd~F~it~edL~~g--------e~iv~C~sCSL~I   55 (83)
T 1yop_A            8 IEIEDMTFEPENQMFTYPCP-CGDRFQIYLDDMFEG--------EKVAVCPSCSLMI   55 (83)
T ss_dssp             CBGGGSEEETTTTEEEEEET-TTEEEEEEHHHHHTT--------CCEEECSSSCCEE
T ss_pred             EEHHHcEEcCCCCEEEEeCC-CCCeEEECHHHHhCC--------CEEEECCCCccEE
Confidence            45667754433 35689999 975  6666677432        2357899999975

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.51  E-value=0.3  Score=34.81  Aligned_cols=54  Identities=9%  Similarity=-0.018  Sum_probs=38.8

Q ss_pred             ccceecCCCCCccc---hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           41 VKACFPCPFCYLEI---EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        41 ~r~~F~CPfC~ed~---D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      .+..+.|+.|+..|   ....|..|+.. |.- .++-.|++|...-  ..++..|+...|.
T Consensus        47 ~~~~~~C~~C~~~f~f~~~~~l~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           47 DDNHETDNNNPKRWSKPRKRSLLEMEGK-EDA-QKVLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             CSCCCCCCCCCSCCSSCCCCCCCCCCCS-CCC-CSSCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             cCCCccCCCCCcccccccHHHHHHHhhc-cCC-CcceECCCCCCccCCHHHHHHHHHHhCC
Confidence            34456799998876   66788888765 543 3567899999874  4588889855443

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=85.47  E-value=0.62  Score=32.82  Aligned_cols=50  Identities=16%  Similarity=0.400  Sum_probs=37.4

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~QH~   96 (220)
                      .|.| .|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+...++
T Consensus        10 ~~~C-~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   62 (110)
T 2csh_A           10 LYPC-QCGKSFTHKSQRDRHMSM-HLG-LRPYGCGVCGKKFKMKHHLVGHMKIHTG   62 (110)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHHH-HSC-CCSEECTTTSCEESSSHHHHHHHTTTCC
T ss_pred             CEec-cCCCccCCHHHHHHHHHH-cCC-CcCccCCCCCcccCCHHHHHHHHHHcCC
Confidence            5899 898865 56789999886 433 3567999999874  4588999866554

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=85.44  E-value=0.77  Score=32.82  Aligned_cols=51  Identities=18%  Similarity=0.305  Sum_probs=37.2

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCcccccccc--ccccc--chhHhhhhhhhcc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANL--GKDAAEHFMVQHA   96 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPV--Ca~~v--g~D~i~Hit~QH~   96 (220)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++  |....  ..++..|+...++
T Consensus        34 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   89 (124)
T 1ubd_C           34 VHVCAECGKAFVESSKLKRHQLV-HTG-EKPFQCTFEGCGKRFSLDFNLRTHVRIHTG   89 (124)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGG-TSC-CCCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCC-CCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            58999998865 56788899875 433 35578987  98863  4588889866554

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.44  E-value=0.39  Score=28.91  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=25.0

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|... |.- .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2eoo_A           12 PYGCNECGKNFGRHSHLIEHLKR-HFR-EKSSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HHS-TTSSCCSCC
T ss_pred             CEEccccCcccCCHHHHHHHHHH-HcC-CCCCCCCCC
Confidence            599999998654 5668888765 543 356789988

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=85.38  E-value=0.52  Score=33.26  Aligned_cols=47  Identities=19%  Similarity=0.478  Sum_probs=22.3

Q ss_pred             ecCCC--CCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhh
Q 027681           45 FPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMV   93 (220)
Q Consensus        45 F~CPf--C~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~   93 (220)
                      |.|++  |+..| ....|..|+.. |. ..+.-.|++|....  ..++..|+.+
T Consensus        37 ~~C~~~~C~~~f~~~~~l~~H~~~-h~-~~~~~~C~~C~~~f~~~~~l~~H~~~   88 (119)
T 2jp9_A           37 YQCDFKDCERRFSRSDQLKRHQRR-HT-GVKPFQCKTCQRKFSRSDHLKTHTRT   88 (119)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH-HH-CCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             ccCCCCCCcCccCCHHHHHHHHHH-cC-CCCCccCCccCchhCCHHHHHHHHHH
Confidence            55653  65533 34455555554 22 12334566665542  3355555543

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.11  E-value=0.52  Score=28.14  Aligned_cols=34  Identities=15%  Similarity=0.027  Sum_probs=25.2

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|++.|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emm_A           12 PHKCNECGKSFIQSAHLIQHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HSC-CCTTSSSCC
T ss_pred             CeeCCCCChhhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999988654 5678888765 644 456789988

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.05  E-value=0.35  Score=29.03  Aligned_cols=34  Identities=15%  Similarity=0.100  Sum_probs=24.7

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|- ...|..|... |.-+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~C   46 (46)
T 2yu8_A           12 PYKCNECGKVFTQNSHLARHRRV-HTGG-KPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHTHH-HHSC-CCSCSCCC
T ss_pred             CeECCcCCchhCCHHHHHHHHHh-cCCC-CCCCCCCC
Confidence            599999988554 5678888764 5443 56789988

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=84.92  E-value=0.46  Score=31.06  Aligned_cols=36  Identities=17%  Similarity=0.387  Sum_probs=25.4

Q ss_pred             eecCCCCCccchHHHhhhhhhcccCCCccccccccccccc
Q 027681           44 CFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL   83 (220)
Q Consensus        44 ~F~CPfC~ed~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v   83 (220)
                      .|.||.|+..|....-..   ..|.- .++-.|++|....
T Consensus        14 ~~~C~~C~k~F~~~~~l~---~~H~~-~k~~~C~~C~k~f   49 (62)
T 1vd4_A           14 SFKCPVCSSTFTDLEANQ---LFDPM-TGTFRCTFCHTEV   49 (62)
T ss_dssp             EEECSSSCCEEEHHHHHH---HEETT-TTEEBCSSSCCBC
T ss_pred             CccCCCCCchhccHHHhH---hhcCC-CCCEECCCCCCcc
Confidence            599999998776654332   44644 3667999998763

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.70  E-value=0.75  Score=27.51  Aligned_cols=34  Identities=15%  Similarity=0.170  Sum_probs=25.0

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2eml_A           12 PYECSVCGKAFSHRQSLSVHQRI-HSG-KKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGG-GSS-CCCSCSSCC
T ss_pred             CeeCCCcCCccCCHHHHHHHHHH-hcC-CCCCCCCCC
Confidence            499999988554 4667888765 544 456789988

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=84.39  E-value=0.79  Score=27.50  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=25.2

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|... |.- .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2el6_A           12 PYKCSQCEKSFSGKLRLLVHQRM-HTR-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG-GCC-SSCCSCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            59999998855 45678888665 654 356789988

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=84.38  E-value=1.1  Score=30.62  Aligned_cols=50  Identities=18%  Similarity=0.432  Sum_probs=36.4

Q ss_pred             ceecCCC--CCccc-hHHHhhhhhhcccCCCccccccccccccc--chhHhhhhhhh
Q 027681           43 ACFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQ   94 (220)
Q Consensus        43 ~~F~CPf--C~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--g~D~i~Hit~Q   94 (220)
                      ..|.||+  |+..| ....|..|+.. |.- .+.-.|++|....  ..++..|+.+.
T Consensus        44 ~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           44 KPYKCTWEGCDWRFARSDELTRHYRK-HTG-AKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHH-HTS-CCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             CCeeCCCCCCCCccCCHHHHHHHHHH-hCC-CCCeECCCCcCccCCHHHHHHHHHHh
Confidence            3599986  98855 56788899865 443 3567899999863  45888888543

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=84.33  E-value=0.77  Score=32.92  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=28.0

Q ss_pred             CCccceecCCCCCc------------cchHHHhhhhhhcccCCCcccccccccccccch
Q 027681           39 DDVKACFPCPFCYL------------EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   85 (220)
Q Consensus        39 dd~r~~F~CPfC~e------------d~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~vg~   85 (220)
                      .++..+|.||-|.+            .|+...+..|+..       +..||+|...+..
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-------~~~cP~~~~~l~~   60 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-------SPTDPFNRQMLTE   60 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-------CSBCTTTCCBCCG
T ss_pred             hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-------CCCCCCCcCCCCh
Confidence            45677899988643            4566666666653       4689999988654

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=84.01  E-value=0.4  Score=32.91  Aligned_cols=48  Identities=25%  Similarity=0.665  Sum_probs=30.0

Q ss_pred             CCCccceecCCCCCccchHHH-----hhhhhhcccCCCc---ccccccccccccch
Q 027681           38 DDDVKACFPCPFCYLEIEAHM-----ICSHLQEEHCFEM---KNAVCPLCAANLGK   85 (220)
Q Consensus        38 ddd~r~~F~CPfC~ed~D~~~-----Lc~H~~eeH~~e~---k~vVCPVCa~~vg~   85 (220)
                      +++....+.||.|.+.|+...     -|-|.-=.++...   +...||+|...+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A            9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence            344556788999987765331     3666543344421   34689999887654

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.39  E-value=0.46  Score=28.57  Aligned_cols=34  Identities=15%  Similarity=0.122  Sum_probs=24.5

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..| ....|..|+.. |.- .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytt_A           12 PYQCSECGKSFSGSYRLTQHWIT-HTR-EKPSGPSSG   46 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHTH-HHH-CCCCSCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            48999998855 45678888765 543 355689988

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.15  E-value=0.75  Score=27.25  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=25.1

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   44 (44)
T 2emx_A           10 PFGCSCCEKAFSSKSYLLVHQQT-HAE-EKPSGPSSG   44 (44)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH-HTS-SCSCSCCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999988554 5678888765 543 356789888

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.13  E-value=0.61  Score=27.93  Aligned_cols=34  Identities=15%  Similarity=0.048  Sum_probs=24.8

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|- ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emp_A           12 PYMCNECGKAFSVYSSLTTHQVI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHHHH-HHC-CSCCSCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            499999988554 5678888765 543 356789988

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.00  E-value=0.72  Score=27.67  Aligned_cols=34  Identities=24%  Similarity=0.190  Sum_probs=24.6

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|++|+..|. ...|..|... |.- .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~~   46 (46)
T 2em2_A           12 PFKCKECGKAFRQNIHLASHLRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HCC-CCSSCSSCC
T ss_pred             CEECCcCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            589999988554 5678888765 543 356788886

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.89  E-value=0.5  Score=30.29  Aligned_cols=19  Identities=11%  Similarity=0.377  Sum_probs=13.3

Q ss_pred             CCCccceecCCCCCccchH
Q 027681           38 DDDVKACFPCPFCYLEIEA   56 (220)
Q Consensus        38 ddd~r~~F~CPfC~ed~D~   56 (220)
                      .+++...+.||.|.+.+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~   27 (58)
T 2ecj_A            9 LENLQVEASCSVCLEYLKE   27 (58)
T ss_dssp             SSCSCCCCBCSSSCCBCSS
T ss_pred             hhccccCCCCccCCcccCc
Confidence            3456667889999775554

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.66  E-value=0.21  Score=34.75  Aligned_cols=48  Identities=21%  Similarity=0.454  Sum_probs=27.3

Q ss_pred             cCCCccceecCCCCCccchHHH--hhhhhhcccCCC---cccccccccccccc
Q 027681           37 IDDDVKACFPCPFCYLEIEAHM--ICSHLQEEHCFE---MKNAVCPLCAANLG   84 (220)
Q Consensus        37 ~ddd~r~~F~CPfC~ed~D~~~--Lc~H~~eeH~~e---~k~vVCPVCa~~vg   84 (220)
                      ++++....+.||.|.+.+....  -|-|.--..+..   .+...||+|...+.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A            8 GSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            3455666899999977554332  133321111111   13568999999875

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=81.83  E-value=0.15  Score=36.22  Aligned_cols=46  Identities=24%  Similarity=0.494  Sum_probs=28.2

Q ss_pred             CCCccceecCCCCCccchHH-Hh--hhh-----hhcccCCCccccccccccccc
Q 027681           38 DDDVKACFPCPFCYLEIEAH-MI--CSH-----LQEEHCFEMKNAVCPLCAANL   83 (220)
Q Consensus        38 ddd~r~~F~CPfC~ed~D~~-~L--c~H-----~~eeH~~e~k~vVCPVCa~~v   83 (220)
                      ++++...+.||-|.+.|... .|  |-|     |-.++-.......||+|...+
T Consensus         7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            45677789999997754422 22  344     333332233446899999885

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=81.74  E-value=1.6  Score=32.35  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=27.4

Q ss_pred             CCccceecCCCCCc------------cchHHHhhhhhhcccCCCcccccccccccccch
Q 027681           39 DDVKACFPCPFCYL------------EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   85 (220)
Q Consensus        39 dd~r~~F~CPfC~e------------d~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~vg~   85 (220)
                      .++..+|.||-|.+            .|+...+..|+..       +..||+|...+..
T Consensus        24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-------~~~cP~~~~~l~~   75 (100)
T 2kre_A           24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-------SPTDPFNRQTLTE   75 (100)
T ss_dssp             SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-------CSBCSSSCCBCCT
T ss_pred             ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-------CCCCCCCCCCCCh
Confidence            45677999998754            3555555555542       4689999998654

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=81.58  E-value=0.25  Score=33.80  Aligned_cols=47  Identities=19%  Similarity=0.421  Sum_probs=27.5

Q ss_pred             CCccceecCCCCCccchHHH--hhhhh-----hcccCC----Ccccccccccccccch
Q 027681           39 DDVKACFPCPFCYLEIEAHM--ICSHL-----QEEHCF----EMKNAVCPLCAANLGK   85 (220)
Q Consensus        39 dd~r~~F~CPfC~ed~D~~~--Lc~H~-----~eeH~~----e~k~vVCPVCa~~vg~   85 (220)
                      +++...+.||.|.+.+....  -|-|.     -..+-.    +.....||+|...+..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            44566789999977554321  24342     222111    1236789999988764

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=81.32  E-value=0.84  Score=24.26  Aligned_cols=26  Identities=19%  Similarity=0.489  Sum_probs=17.7

Q ss_pred             eecCCCCCccc-hHHHhhhhhhcccCC
Q 027681           44 CFPCPFCYLEI-EAHMICSHLQEEHCF   69 (220)
Q Consensus        44 ~F~CPfC~ed~-D~~~Lc~H~~eeH~~   69 (220)
                      .|.|+.|+..| ....|..|+...|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            37899998766 446777885555643

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.30  E-value=0.84  Score=30.41  Aligned_cols=47  Identities=23%  Similarity=0.514  Sum_probs=27.6

Q ss_pred             CCccceecCCCCCccchHH--HhhhhhhcccCC----Ccccccccccccccch
Q 027681           39 DDVKACFPCPFCYLEIEAH--MICSHLQEEHCF----EMKNAVCPLCAANLGK   85 (220)
Q Consensus        39 dd~r~~F~CPfC~ed~D~~--~Lc~H~~eeH~~----e~k~vVCPVCa~~vg~   85 (220)
                      +++...+.||.|.+.+...  .-|-|.-=..+.    ...+..||+|...+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            4566789999997655432  123332111111    1446789999988765

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.11  E-value=0.99  Score=26.95  Aligned_cols=34  Identities=18%  Similarity=-0.008  Sum_probs=25.1

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|... |.- .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2yso_A           12 SHQCRECGEIFFQYVSLIEHQVL-HMG-QKNSGPSSG   46 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHH-HSC-CSCCCTTCC
T ss_pred             CEEccccChhhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999988654 5678888765 543 356789988

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.77  E-value=0.84  Score=27.36  Aligned_cols=34  Identities=15%  Similarity=-0.026  Sum_probs=25.0

Q ss_pred             eecCCCCCccch-HHHhhhhhhcccCCCccccccccc
Q 027681           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (220)
Q Consensus        44 ~F~CPfC~ed~D-~~~Lc~H~~eeH~~e~k~vVCPVC   79 (220)
                      .|.|+.|+..|. ...|..|+.. |.- .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em8_A           12 PYKCVECGKGYKRRLDLDFHQRV-HTG-EKLSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HHC-CCCCCSCCC
T ss_pred             CeECcccCchhCCHHHHHHHHHH-HcC-CCCCCCCCC
Confidence            599999988554 4678888765 543 356789988

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.55  E-value=0.29  Score=33.53  Aligned_cols=47  Identities=23%  Similarity=0.608  Sum_probs=27.1

Q ss_pred             CCccceecCCCCCccchHHH--hhhhhhcccCC---------Ccccccccccccccch
Q 027681           39 DDVKACFPCPFCYLEIEAHM--ICSHLQEEHCF---------EMKNAVCPLCAANLGK   85 (220)
Q Consensus        39 dd~r~~F~CPfC~ed~D~~~--Lc~H~~eeH~~---------e~k~vVCPVCa~~vg~   85 (220)
                      +++...+.||.|.+.+....  -|-|.-=..+.         +.....||+|...+..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            45666889999977654321  13332111111         1236789999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	93.31
d1wgea1	70	DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus	91.73
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	89.76
d1ywsa1	82	Diphthamide biosynthesis protein 3, DPH3 {Baker's	87.25
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	85.33
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	83.34
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	83.17
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	80.39
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	80.31
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	80.22

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.021  Score=39.19  Aligned_cols=46  Identities=24%  Similarity=0.612  Sum_probs=33.7

Q ss_pred             CccccCCCccceecCCCCCc---cchHHHhhhhhhcccCCCcccccccccccccch
Q 027681           33 DETEIDDDVKACFPCPFCYL---EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   85 (220)
Q Consensus        33 de~e~ddd~r~~F~CPfC~e---d~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~vg~   85 (220)
                      ++.+-+.-.++.|.||.|..   .+|...|.+..+.       .-.|-+|..-|-.
T Consensus         3 e~~~rd~~~~~~y~Cp~C~~~ys~Lda~~L~d~~~~-------~F~C~~C~~el~e   51 (62)
T d1vd4a_           3 ETDERDSTNRASFKCPVCSSTFTDLEANQLFDPMTG-------TFRCTFCHTEVEE   51 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHHHEETTTT-------EEBCSSSCCBCEE
T ss_pred             chhhhccccCCceECCCCCCCcchhhHHHhcCcCCC-------eEEecCCCCEEec
Confidence            34444556799999999965   8888888776433       5689999887644

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.73  E-value=0.043  Score=38.42  Aligned_cols=44  Identities=25%  Similarity=0.565  Sum_probs=28.7

Q ss_pred             ccCccccCCC-ccceecCCCCCc--cchHHHhhhhhhcccCCCccccccccccccc
Q 027681           31 IVDETEIDDD-VKACFPCPFCYL--EIEAHMICSHLQEEHCFEMKNAVCPLCAANL   83 (220)
Q Consensus        31 ~~de~e~ddd-~r~~F~CPfC~e--d~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v   83 (220)
                      .+||++-|+| ..-+|||| |+.  .+-...|-.+        .--+.||-|+-.+
T Consensus         9 ~leD~~~dee~~~~~ypCp-CGd~F~it~~dLe~g--------e~V~~C~sCSL~i   55 (70)
T d1wgea1           9 EIEDFQYDEDSETYFYPCP-CGDNFAITKEDLENG--------EDVATCPSCSLII   55 (70)
T ss_dssp             EGGGSCCBTTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEECTTTCCEE
T ss_pred             EeeeeeEeCCCCEEEeCCC-CCCeEEECHHHHhCC--------CeEEeCCCCceEE
Confidence            5567765444 45799999 976  4555555443        1235699999875

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.76  E-value=0.042  Score=31.55  Aligned_cols=11  Identities=55%  Similarity=1.748  Sum_probs=7.5

Q ss_pred             ecCCCCCccch
Q 027681           45 FPCPFCYLEIE   55 (220)
Q Consensus        45 F~CPfC~ed~D   55 (220)
                      ||||||-.+|.
T Consensus         2 ypcp~cfkeft   12 (26)
T d2drpa2           2 YPCPFCFKEFT   12 (26)
T ss_dssp             EECTTTCCEES
T ss_pred             cCCchhhHHhc
Confidence            67777766654

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.25  E-value=0.11  Score=37.25  Aligned_cols=46  Identities=24%  Similarity=0.520  Sum_probs=28.9

Q ss_pred             CccCccccCC-CccceecCCCCCc--cchHHHhhhhhhcccCCCcccccccccccccc
Q 027681           30 SIVDETEIDD-DVKACFPCPFCYL--EIEAHMICSHLQEEHCFEMKNAVCPLCAANLG   84 (220)
Q Consensus        30 ~~~de~e~dd-d~r~~F~CPfC~e--d~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~vg   84 (220)
                      ..+||++-|+ ...-+|+|| |+.  .+....|-.+        .--+.||-|+-.+.
T Consensus         7 v~LeDm~~ded~~~~~ypCr-CGd~F~it~~dLe~g--------e~v~~C~sCSL~Ir   55 (82)
T d1ywsa1           7 IEIEDMTFEPENQMFTYPCP-CGDRFQIYLDDMFEG--------EKVAVCPSCSLMID   55 (82)
T ss_dssp             EETTTSEEETTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEEETTTTEEEE
T ss_pred             EEecceEEeCCCCEEEeccc-cCCeEEEcHHHHhCC--------CeEEeCCCCceEEE
Confidence            3566776443 356789999 976  4444455432        12346999999753

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.33  E-value=0.13  Score=36.67  Aligned_cols=47  Identities=13%  Similarity=0.149  Sum_probs=26.7

Q ss_pred             CCccceecCCCCCccc-hHHHh-hhh-hhcccCC---Ccccccccccccccch
Q 027681           39 DDVKACFPCPFCYLEI-EAHMI-CSH-LQEEHCF---EMKNAVCPLCAANLGK   85 (220)
Q Consensus        39 dd~r~~F~CPfC~ed~-D~~~L-c~H-~~eeH~~---e~k~vVCPVCa~~vg~   85 (220)
                      .|...+|.||.|.+=+ |-+-+ |+| .-+..+.   -.++..||+|...+..
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            4677799999997632 33223 333 1111111   0235689999998764

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.34  E-value=0.35  Score=36.46  Aligned_cols=48  Identities=25%  Similarity=0.347  Sum_probs=33.5

Q ss_pred             CCccceecCCCCCccc-hHHHhhhhhhcccCCCcccccccccccccchhHhhhh
Q 027681           39 DDVKACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHF   91 (220)
Q Consensus        39 dd~r~~F~CPfC~ed~-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~vg~D~i~Hi   91 (220)
                      ++-.+..+|-||.+.| ++..+..||.+.|-|+-..++     .+.+.|+.+-|
T Consensus        10 ~~e~~~~~CLFCd~~f~s~~~~l~H~k~~H~FD~~~~~-----~~~~LDfY~~I   58 (121)
T d1wira_          10 AHGRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMV-----HKHGLEFYGYI   58 (121)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHHHHSSCCCHHHHH-----HHTTCCHHHHH
T ss_pred             CCCcccceecccCCccCCHHHHHHHHHHhhCCCHHHHH-----HHcCCCccceE
Confidence            3344566799998754 789999999999999776532     23445554444

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.17  E-value=0.24  Score=29.26  Aligned_cols=27  Identities=19%  Similarity=0.683  Sum_probs=22.7

Q ss_pred             eecCCCC-CccchHHHhhhhhhcccCCC
Q 027681           44 CFPCPFC-YLEIEAHMICSHLQEEHCFE   70 (220)
Q Consensus        44 ~F~CPfC-~ed~D~~~Lc~H~~eeH~~e   70 (220)
                      .|.|+|| +..-|.+-|-.|+...|.-|
T Consensus         2 py~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccccccccccccchhhhhhhhcccccC
Confidence            3789999 56999999999999888654

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.39  E-value=0.23  Score=33.33  Aligned_cols=46  Identities=15%  Similarity=0.347  Sum_probs=25.0

Q ss_pred             CccceecCCCCCccchHH-H-hhhhhhcccCC----Ccccccccccccccch
Q 027681           40 DVKACFPCPFCYLEIEAH-M-ICSHLQEEHCF----EMKNAVCPLCAANLGK   85 (220)
Q Consensus        40 d~r~~F~CPfC~ed~D~~-~-Lc~H~~eeH~~----e~k~vVCPVCa~~vg~   85 (220)
                      |...+|.||-|.+-+.-. . -|-|.-...+.    +.....||+|...++.
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCc
Confidence            566789999986532211 1 13332222221    2344579999988643

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.31  E-value=0.63  Score=31.21  Aligned_cols=40  Identities=18%  Similarity=0.238  Sum_probs=25.3

Q ss_pred             CccceecCCCCCc------------cchHHHhhhhhhcccCCCcccccccccccccch
Q 027681           40 DVKACFPCPFCYL------------EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   85 (220)
Q Consensus        40 d~r~~F~CPfC~e------------d~D~~~Lc~H~~eeH~~e~k~vVCPVCa~~vg~   85 (220)
                      |+..+|.||.|.+            .|+...|..++..      ....||+|...+..
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~------~~~~cP~c~~~l~~   54 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR------VGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHH------TCSSCTTTCCCCCG
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhc------CCccCCCccccccc
Confidence            4456788888754            3444555555543      23479999988754

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.22  E-value=0.36  Score=31.22  Aligned_cols=41  Identities=27%  Similarity=0.633  Sum_probs=29.0

Q ss_pred             eecCCCCCccchHHHh--hhhhhcccCCCcccccccccccccc
Q 027681           44 CFPCPFCYLEIEAHMI--CSHLQEEHCFEMKNAVCPLCAANLG   84 (220)
Q Consensus        44 ~F~CPfC~ed~D~~~L--c~H~~eeH~~e~k~vVCPVCa~~vg   84 (220)
                      .+.||.|.+.+....+  |-|.-=..+.+.....||+|...+.
T Consensus         6 ~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~   48 (56)
T d1bora_           6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWP   48 (56)
T ss_dssp             CSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred             CCCCcccCcccCCCEEecCCCHHhHHHHHcCCCcCcCCCCccc
Confidence            4679999775554332  5676666666777889999988764