Citrus Sinensis ID: 027689


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
MIFVGGLPFSTNNSSWSSSSSQGSDILVALLEHPVLVSASHSFKSMEETKVSVSSETPSPSKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLCKILLNGI
cEEEccEEcccccccccccccccHHHHHHHHHcccHHccccccHHHHHHHcccccccccccEEEEEEcEEEEEEccccEEEEEccccEEEEEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccccccEEEEEEEEEEEccc
cEEEccEcccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEEEccccEEEEEcccccEEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHHccccccccEEEEEEcccccccccEEccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccccEEHHEEEEEEEccc
mifvgglpfstnnsswsssssqGSDILVALLEHpvlvsashsfksmeetkvsvssetpspskyvYVFQREyatvdpalvdyvgtdeatTCVGLVIRNRrnrmtsiahmdnpeivDIGLCQMLSLVVDHDLDAELDVYLIggfddaspnhangttisecysdmdgyslplCRKLVDTLQRRQEKFHVQTLHVlghntkrdsqgnaypiFHGFLCKILLNGI
MIFVGGLPFSTNNSSWSSSSSQGSDILVALLEHPVLVSASHSFKSMEETkvsvssetpspsKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLCKILLNGI
MIFVGGLPFstnnsswsssssqgsDILVALLEHPVLVSASHSFKSMEETKVSVSSETPSPSKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLCKILLNGI
*************************ILVALLEHPVLV************************KYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLCKILLN**
MIFVG***********************ALLEHPVLVSASH****************PSPSKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLCKILLN**
MIFVGGLPFS*************SDILVALLEHPVLVSASHS*****************PSKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLCKILLNGI
*I****LPF**************SDILVALLEHPVLVSASHSFKSMEETKV******PSPSKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHAN***ISEC*S*MDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLCKILLNGI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIFVGGLPFSTNNSSWSSSSSQGSDILVALLEHPVLVSASHSFKSMEETKVSVSSETPSPSKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLCKILLNGI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query220 2.2.26 [Sep-21-2011]
Q96AB6 310 Protein N-terminal aspara yes no 0.627 0.445 0.275 4e-07
Q28955 310 Protein N-terminal aspara yes no 0.622 0.441 0.285 6e-07
Q64311 310 Protein N-terminal aspara yes no 0.622 0.441 0.273 4e-06
>sp|Q96AB6|NTAN1_HUMAN Protein N-terminal asparagine amidohydrolase OS=Homo sapiens GN=NTAN1 PE=1 SV=3 Back     alignment and function desciption
 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 22/160 (13%)

Query: 60  PSKYVYVFQREYATVDP--ALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEI-VDI 116
           P   +YV QRE A   P    +  +G+D+ATTC  +V+R+  N  T + H D  +   ++
Sbjct: 43  PQGLLYVQQRELAVTSPKDGSISILGSDDATTCHIVVLRHTGNGATCLTHCDGTDTKAEV 102

Query: 117 GLC-QMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVD 175
            L    +    DH     L+V+L+GGF                 SD    S  L  +L+ 
Sbjct: 103 PLIMNSIKSFSDHAQCGRLEVHLVGGF-----------------SDDRQLSQKLTHQLLS 145

Query: 176 TLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLCKI 215
              R+++  H+ TL V   N + +++ N +P+ +G    I
Sbjct: 146 EFDRQEDDIHLVTLCVTELNDREENE-NHFPVIYGIAVNI 184




Side-chain deamidation of N-terminal asparagine residues to aspartate. Required for the ubiquitin-dependent turnover of intracellular proteins that initiate with Met-Asn. These proteins are acetylated on the retained initiator methionine and can subsequently be modified by the removal of N-acetyl methionine by acylaminoacid hydrolase (AAH). Conversion of the resulting N-terminal asparagine to aspartate by PNAD renders the protein susceptible to arginylation, polyubiquitination and degradation as specified by the N-end rule. This enzyme does not act on substrates with internal or C-terminal asparagines and does not act on glutamine residues in any position.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: -
>sp|Q28955|NTAN1_PIG Protein N-terminal asparagine amidohydrolase OS=Sus scrofa GN=NTAN1 PE=1 SV=3 Back     alignment and function description
>sp|Q64311|NTAN1_MOUSE Protein N-terminal asparagine amidohydrolase OS=Mus musculus GN=Ntan1 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query220
224104535 359 predicted protein [Populus trichocarpa] 0.940 0.576 0.635 5e-75
356525612 343 PREDICTED: protein N-terminal asparagine 0.95 0.609 0.641 1e-74
359487457 363 PREDICTED: protein N-terminal asparagine 0.959 0.581 0.646 1e-69
449463783 347 PREDICTED: protein N-terminal asparagine 0.954 0.605 0.587 1e-66
297741220 339 unnamed protein product [Vitis vinifera] 0.85 0.551 0.670 2e-66
357451021 384 Protein N-terminal asparagine amidohydro 0.85 0.486 0.614 1e-62
147768910 375 hypothetical protein VITISV_024457 [Viti 0.904 0.530 0.600 1e-61
297824457 348 N-terminal asparagine amidohydrolase fam 0.954 0.603 0.564 2e-58
21554202 347 unknown [Arabidopsis thaliana] 0.95 0.602 0.574 4e-57
18406532 347 protein N-terminal asparagine amidohydro 0.95 0.602 0.574 5e-57
>gi|224104535|ref|XP_002313470.1| predicted protein [Populus trichocarpa] gi|222849878|gb|EEE87425.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 136/214 (63%), Positives = 169/214 (78%), Gaps = 7/214 (3%)

Query: 1   MIFVGGLPFSTNNSSWSSSSSQGSDILVALLEHPVLVSASHSFKSMEETKVSVSSETPSP 60
           MIFV GL F T+       SSQ    LV LLEHP LVSAS+SF++M+E K+S S E    
Sbjct: 1   MIFVDGLTFPTD-------SSQERGALVTLLEHPKLVSASNSFEAMQEVKLSASKEYALQ 53

Query: 61  SKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQ 120
            ++VYVFQRE+ATVDPAL+D++GTDEATTCVGLVIRN+RN MTS+AHMD+ ++VDIGL Q
Sbjct: 54  GRWVYVFQREFATVDPALIDFIGTDEATTCVGLVIRNQRNGMTSVAHMDSTKVVDIGLAQ 113

Query: 121 MLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRR 180
           MLS+VVD + D +LDV+LIGGF+D  P  ANG+T SE  +  DGYS PLC K+++ L++ 
Sbjct: 114 MLSIVVDKNFDDDLDVHLIGGFEDVLPKQANGSTRSETQAKGDGYSFPLCTKIIENLRKG 173

Query: 181 QEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLCK 214
           +EKFH+QTL VLGHNTKRDSQGNAYP+F+GFL K
Sbjct: 174 KEKFHIQTLFVLGHNTKRDSQGNAYPVFNGFLVK 207




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525612|ref|XP_003531418.1| PREDICTED: protein N-terminal asparagine amidohydrolase-like [Glycine max] Back     alignment and taxonomy information
>gi|359487457|ref|XP_002268254.2| PREDICTED: protein N-terminal asparagine amidohydrolase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463783|ref|XP_004149611.1| PREDICTED: protein N-terminal asparagine amidohydrolase-like [Cucumis sativus] gi|449526561|ref|XP_004170282.1| PREDICTED: protein N-terminal asparagine amidohydrolase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297741220|emb|CBI32171.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357451021|ref|XP_003595787.1| Protein N-terminal asparagine amidohydrolase [Medicago truncatula] gi|355484835|gb|AES66038.1| Protein N-terminal asparagine amidohydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|147768910|emb|CAN75884.1| hypothetical protein VITISV_024457 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297824457|ref|XP_002880111.1| N-terminal asparagine amidohydrolase family protein [Arabidopsis lyrata subsp. lyrata] gi|297325950|gb|EFH56370.1| N-terminal asparagine amidohydrolase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21554202|gb|AAM63281.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18406532|ref|NP_566017.1| protein N-terminal asparagine amidohydrolase family protein [Arabidopsis thaliana] gi|20197192|gb|AAC16088.2| expressed protein [Arabidopsis thaliana] gi|26450109|dbj|BAC42174.1| unknown protein [Arabidopsis thaliana] gi|28827584|gb|AAO50636.1| unknown protein [Arabidopsis thaliana] gi|330255324|gb|AEC10418.1| protein N-terminal asparagine amidohydrolase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query220
TAIR|locus:2050549 347 AT2G44420 "AT2G44420" [Arabido 0.95 0.602 0.546 3.5e-59
UNIPROTKB|F1PPS3 313 NTAN1 "Uncharacterized protein 0.75 0.527 0.267 1.2e-09
ZFIN|ZDB-GENE-040426-1896 306 zgc:77869 "zgc:77869" [Danio r 0.704 0.506 0.285 3.1e-09
UNIPROTKB|Q96AB6 310 NTAN1 "Protein N-terminal aspa 0.654 0.464 0.271 3.9e-08
UNIPROTKB|Q28955 310 NTAN1 "Protein N-terminal aspa 0.654 0.464 0.277 5.8e-08
UNIPROTKB|E1B891 310 NTAN1 "Uncharacterized protein 0.654 0.464 0.271 1.1e-07
FB|FBgn0034371 310 SP2637 "SP2637" [Drosophila me 0.486 0.345 0.308 1.6e-07
RGD|1305160 309 Ntan1 "N-terminal asparagine a 0.654 0.466 0.271 5.5e-07
MGI|MGI:108471 310 Ntan1 "N-terminal Asn amidase" 0.654 0.464 0.265 7.8e-07
UNIPROTKB|E1C4J5 310 NTAN1 "Uncharacterized protein 0.681 0.483 0.270 8.1e-06
TAIR|locus:2050549 AT2G44420 "AT2G44420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 118/216 (54%), Positives = 158/216 (73%)

Query:     1 MIFVGGLPFXXXXXXXXXXXXXX-XDILVALLEHPVLVSASHSFKSMEETKVSVS---SE 56
             MI+VGG+ F                 +LV ++ HPV+  AS SFK++EE  VS     SE
Sbjct:     1 MIYVGGVQFLDESSSFSLSSSSQGSSLLVDVMSHPVITLASDSFKNLEEKNVSFDESDSE 60

Query:    57 TPSPSKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDI 116
             + +  +YVY+FQRE+A V+PALVD+VGTDEATTCVGLVIRNR++ MTS+AHMD+PEIVD+
Sbjct:    61 SSTKDRYVYIFQREFAVVNPALVDFVGTDEATTCVGLVIRNRKSGMTSVAHMDSPEIVDL 120

Query:   117 GLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDT 176
             G+ QML LV+  D+DAELDV+++GG++D    +A+G  + + Y+  +GYS PLC KLV+T
Sbjct:   121 GISQMLLLVLQDDVDAELDVHMVGGYEDVDIKNADG--VGD-YAKPEGYSFPLCCKLVET 177

Query:   177 LQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFL 212
             LQ+R+E FH+QTL +LGHNTK DSQ N  PIF+G L
Sbjct:   178 LQKRRENFHIQTLFILGHNTKLDSQANTCPIFNGCL 213




GO:0008150 "biological_process" evidence=ND
GO:0008418 "protein-N-terminal asparagine amidohydrolase activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA
UNIPROTKB|F1PPS3 NTAN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1896 zgc:77869 "zgc:77869" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q96AB6 NTAN1 "Protein N-terminal asparagine amidohydrolase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q28955 NTAN1 "Protein N-terminal asparagine amidohydrolase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1B891 NTAN1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0034371 SP2637 "SP2637" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1305160 Ntan1 "N-terminal asparagine amidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:108471 Ntan1 "N-terminal Asn amidase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4J5 NTAN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pg.C_LG_IX1324
hypothetical protein (359 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 220
PF14736 274 N_Asn_amidohyd: Protein N-terminal asparagine amid 100.0
PRK13490162 chemoreceptor glutamine deamidase CheD; Provisiona 96.79
PRK13498167 chemoreceptor glutamine deamidase CheD; Provisiona 96.77
PRK13493213 chemoreceptor glutamine deamidase CheD; Provisiona 96.58
PRK13495159 chemoreceptor glutamine deamidase CheD; Provisiona 96.56
PRK13494163 chemoreceptor glutamine deamidase CheD; Provisiona 96.42
PRK13497184 chemoreceptor glutamine deamidase CheD; Provisiona 96.26
PRK13489233 chemoreceptor glutamine deamidase CheD; Provisiona 96.18
PRK13491199 chemoreceptor glutamine deamidase CheD; Provisiona 96.12
PRK13488157 chemoreceptor glutamine deamidase CheD; Provisiona 96.11
COG1871164 CheD Chemotaxis protein; stimulates methylation of 96.05
PRK13487201 chemoreceptor glutamine deamidase CheD; Provisiona 95.47
>PF14736 N_Asn_amidohyd: Protein N-terminal asparagine amidohydrolase Back     alignment and domain information
Probab=100.00  E-value=5e-63  Score=442.71  Aligned_cols=153  Identities=36%  Similarity=0.601  Sum_probs=146.8

Q ss_pred             hhccCceeEeecCCCCCCCCeEEEEeceeeEEecCC--ceeeeecCCCceeeEEEEEeCCCCceEEEeccCCchhhHHHH
Q 027689           42 SFKSMEETKVSVSSETPSPSKYVYVFQREYATVDPA--LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLC  119 (220)
Q Consensus        42 ~l~~~p~~~v~~~~e~s~~~~lLYV~QRE~A~t~P~--~V~ilGSDdATTChivVlRhtgsGatslaH~Dgs~~V~~~v~  119 (220)
                      +|+++|.+.++       |+|+|||+|||||||+|+  +|+|||||||||||||||||++|||||||||||+++ +++|+
T Consensus         1 ~~~s~~~~~~~-------~~~~lYV~QrE~A~~~p~d~~v~~lGSDdATTC~ivVlRh~~sg~t~laH~Dgs~~-~~~v~   72 (274)
T PF14736_consen    1 QFRSQPHKVVG-------PKGLLYVQQREFATTTPADKSVSILGSDDATTCHIVVLRHTGSGATCLAHLDGSDT-EEGVA   72 (274)
T ss_pred             CcccCCceecC-------CCeeEEEecceeEEecCccCccceEecCCCcEEEEEEEEcCCCCcEEEEEecCCCh-hhHHH
Confidence            58999999999       999999999999999999  699999999999999999999999999999999997 99999


Q ss_pred             HHHHhh---cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeEeccCCc
Q 027689          120 QMLSLV---VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNT  196 (220)
Q Consensus       120 ~ml~~l---~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~CV~~lNt  196 (220)
                      +|++++   +.++.++||||||||||+|+                 +|||++||.+||++|||++++|||+||||+++||
T Consensus        73 ~ml~~v~~~~~~~~~~~lelhLVGGF~D~-----------------~~~S~~l~~~ll~~f~~~~~~~~L~t~Cv~~~Nt  135 (274)
T PF14736_consen   73 QMLSSVQSLSNGYPEGRLELHLVGGFDDD-----------------RGYSQKLSLNLLEAFHKQPEEIHLRTFCVTELNT  135 (274)
T ss_pred             HHHHHHHhhccCCCCCceEEEEEccccCc-----------------ccchHHHHHHHHHHHHcCcceEEEEEEEEccCCC
Confidence            999996   44668999999999999999                 9999999999999999999999999999999999


Q ss_pred             cccCCCCCcceEeeEEEEEeeCCC
Q 027689          197 KRDSQGNAYPIFHGFLCKILLNGI  220 (220)
Q Consensus       197 ~~~~~g~~~PIiyGi~Vni~~~~~  220 (220)
                      ++++ |++|||||||+||++||+|
T Consensus       136 ~~~~-g~~~Pii~Gi~VnvkTG~I  158 (274)
T PF14736_consen  136 RVED-GIHRPIIYGIAVNVKTGEI  158 (274)
T ss_pred             ccCC-CccCcEEEEEEEEecCCeE
Confidence            8885 9999999999999999986



>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query220
2f9z_C159 Protein (chemotaxis methylation protein); bacteria 96.63
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3 Back     alignment and structure
Probab=96.63  E-value=0.0088  Score=49.41  Aligned_cols=102  Identities=16%  Similarity=0.206  Sum_probs=75.5

Q ss_pred             eEEEEeceeeEEec-CC-ceee-eecCCCceeeEEEEEeCCCCceEEEeccC----------CchhhHHHHHHHHhh-cC
Q 027689           62 KYVYVFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDN----------PEIVDIGLCQMLSLV-VD  127 (220)
Q Consensus        62 ~lLYV~QRE~A~t~-P~-~V~i-lGSDdATTChivVlRhtgsGatslaH~Dg----------s~~V~~~v~~ml~~l-~~  127 (220)
                      ..++|.+.||.++. |. -..+ |||     |+.|+|+++..+.-.|+|+==          ....+.++..|++.+ ..
T Consensus         3 ~~i~v~~Ge~~v~~~p~~i~T~~LGS-----CVav~l~Dp~~~iGGm~H~mLP~~~~~~~~~~rY~d~am~~Li~~m~~~   77 (159)
T 2f9z_C            3 MKKVIGIGEYAVMKNPGVIVTLGLGS-----CVAVCMRDPVAKVGAMAHVMLPDSGGKTDKPGKYADTAVKTLVEELKKM   77 (159)
T ss_dssp             CEEECCTTCEEEEETTCEEEEEEESS-----CEEEEEEETTTTEEEEEEECBSCCSSCCSCGGGBHHHHHHHHHHHHHTT
T ss_pred             cEEEEeCCeEEEECCCCEEEEecCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHc
Confidence            45789999999876 55 3556 887     999999999999999999832          235678999999886 55


Q ss_pred             CCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhccc
Q 027689          128 HDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQ  181 (220)
Q Consensus       128 ~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~  181 (220)
                      +....+|++.|.||=.=-...             .....++......+.|.+..
T Consensus        78 Ga~~~~L~aKifGGA~m~~~~-------------~~~IG~rNv~~a~~~L~~~g  118 (159)
T 2f9z_C           78 GAKVERLEAKIAGGASMFESK-------------GMNIGARNVEAVKKHLKDFG  118 (159)
T ss_dssp             TCCGGGCEEEEEECCCCSCCC-------------SSCHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHEEEEEEeCcccCccc-------------ccChHHHHHHHHHHHHHHCC
Confidence            666789999999995533100             02355677777777776644




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query220
d2f9zc1157 Chemoreceptor glutamine deamidase CheD {Thermotoga 96.0
>d2f9zc1 d.194.1.3 (C:1-157) Chemoreceptor glutamine deamidase CheD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: CNF1/YfiH-like putative cysteine hydrolases
superfamily: CNF1/YfiH-like putative cysteine hydrolases
family: CheD-like
domain: Chemoreceptor glutamine deamidase CheD
species: Thermotoga maritima [TaxId: 2336]
Probab=96.00  E-value=0.011  Score=46.71  Aligned_cols=110  Identities=16%  Similarity=0.247  Sum_probs=79.0

Q ss_pred             EeceeeEEec-CC-ceee-eecCCCceeeEEEEEeCCCCceEEEeccCC----------chhhHHHHHHHHhh-cCCCCC
Q 027689           66 VFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDNP----------EIVDIGLCQMLSLV-VDHDLD  131 (220)
Q Consensus        66 V~QRE~A~t~-P~-~V~i-lGSDdATTChivVlRhtgsGatslaH~Dgs----------~~V~~~v~~ml~~l-~~~~~~  131 (220)
                      |.+.||+++. |. -+.+ |||     |+.|+|.++..+.-.|+|+==|          ...+.++..|++.+ ..+...
T Consensus         5 vgiGe~~v~~~~~~i~T~~LGS-----CVav~l~Dp~~~iGGm~H~mLP~~~~~~~~~~rY~d~ai~~Li~~m~~~Ga~~   79 (157)
T d2f9zc1           5 IGIGEYAVMKNPGVIVTLGLGS-----CVAVCMRDPVAKVGAMAHVMLPDSGGKTDKPGKYADTAVKTLVEELKKMGAKV   79 (157)
T ss_dssp             CCTTCEEEEETTCEEEEEEESS-----CEEEEEEETTTTEEEEEEECBSCCSSCCSCGGGBHHHHHHHHHHHHHTTTCCG
T ss_pred             EEeccEEEECCCCEEEEecCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCh
Confidence            5789999985 66 3565 897     9999999999999999998322          23689999999996 456678


Q ss_pred             ceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeEeccCC
Q 027689          132 AELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHN  195 (220)
Q Consensus       132 grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~CV~~lN  195 (220)
                      .+|++.|.||-.=-.     +.        .....++......+.|++..  |.|.---+++..
T Consensus        80 ~~l~aKifGGA~m~~-----~~--------~~~IG~rNv~~a~~~L~~~g--I~i~a~dvGG~~  128 (157)
T d2f9zc1          80 ERLEAKIAGGASMFE-----SK--------GMNIGARNVEAVKKHLKDFG--IKLLAEDTGGNR  128 (157)
T ss_dssp             GGCEEEEEECCCCSC-----CC--------SSCHHHHHHHHHHHHHHHTT--CCEEEEEECCSS
T ss_pred             HHeEEEEecCeeccC-----CC--------CCCcHHHHHHHHHHHHHHCC--CcEEEEECCCCC
Confidence            899999999965321     00        13456677777777777654  444444455433