Citrus Sinensis ID: 027703

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCAK
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHccccHHHcccccccccccccccccccEccccccccccccccccccc
Coil and Loop (DISEMBL)
mgkeerggggeeYLFKIVLIGdsavgksnllsrfarnefdsnskatigveFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCdtavgrmlvgnkcdldsirdvstEEGKSLAEEEGLFFMetsaldstnVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKdgansskgsmmdfsccak
Flexible Loop (DISEMBL)
mgkeerggggeEYLFKIVLIGDSAVGKSNLLSRFARnefdsnskatigvEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTthcdtavgrmlvGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSnisrkvlnsdaykaelsvnRVTLVkdgansskgsmmdfsccak
Low Complexity Region (SEG)
MgkeerggggeeYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCAK
Disordered region (IsUnstruct)
***********EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD************EGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV*******************
Disordered Region (DISOPRED)
************YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY*************************************DFSCCA*
Disordered Region (DISEMBL)
*********GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD*********AEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCAK
Disordered Region (DISPRO)
********GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK**************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q9SRS5	217	Ras-related protein RABA5	yes	no	0.986	1.0	0.777	2e-95
P28187	214	Ras-related protein RABA5	no	no	0.940	0.967	0.791	1e-92
Q9SIP0	219	Ras-related protein RABA5	no	no	0.954	0.958	0.792	2e-92
P19892	218	Ras-related protein RABA5	no	no	0.954	0.963	0.781	1e-91
Q9FGK5	221	Ras-related protein RABA5	no	no	0.931	0.927	0.658	5e-74
Q40191	226	Ras-related protein Rab11	N/A	no	0.822	0.800	0.639	6e-66
P25766	226	Ras-related protein RGP1	no	no	0.813	0.792	0.672	9e-66
Q9LH50	222	Ras-related protein RABA4	no	no	0.927	0.918	0.574	4e-65
Q39572	216	Ras-related protein YPTC6	N/A	no	0.940	0.958	0.581	4e-65
Q9FE79	223	Ras-related protein RABA4	no	no	0.786	0.775	0.670	1e-63

>sp|Q9SRS5|RAA5B_ARATH Ras-related protein RABA5b OS=Arabidopsis thaliana GN=RABA5B PE=2 SV=1

 Score =  348 bits (892), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 171/220 (77%), Positives = 199/220 (90%), Gaps = 3/220 (1%)

Query: 1   MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG 60
           MGKE+    GEEYLFKIVLIGDSAVGKSNLLSRF+R+EFD+NSKATIGVEFQTQ+V+I+G
Sbjct: 1   MGKED--DRGEEYLFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIEG 58

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAV 120
           KEVKAQIWDTAGQERFRAVTSAYYRGA GAL+VYDITR  +F+SVKRWL+EL THCDTAV
Sbjct: 59  KEVKAQIWDTAGQERFRAVTSAYYRGAFGALIVYDITRGDTFESVKRWLQELNTHCDTAV 118

Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
            +MLVGNKCDL+ IR VS EEGK+LAEEEGLFFMETSALD+TNV+ AFE+VIREI++N+S
Sbjct: 119 AQMLVGNKCDLEDIRAVSVEEGKALAEEEGLFFMETSALDATNVDKAFEIVIREIFNNVS 178

Query: 181 RKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCAK 220
           RK+LNSDAYKAELSVNRV+LV +  + S+ S  + SCC++
Sbjct: 179 RKLLNSDAYKAELSVNRVSLV-NNQDGSESSWRNPSCCSR 217

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|P28187|RAA5C_ARATH Ras-related protein RABA5c OS=Arabidopsis thaliana GN=RABA5C PE=1 SV=1

 Score =  338 bits (868), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 167/211 (79%), Positives = 189/211 (89%), Gaps = 4/211 (1%)

Query: 10  GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWD 69
           GEEYLFKIV+IGDSAVGKSNLL+R+ARNEF+ NSKATIGVEFQTQ + IDGKEVKAQIWD
Sbjct: 8   GEEYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWD 67

Query: 70  TAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKC 129
           TAGQERFRAVTSAYYRGAVGALVVYDITR S+F++V RWL+EL TH DT V +ML+GNKC
Sbjct: 68  TAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKC 127

Query: 130 DLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAY 189
           DL+SIR VS EEGKSLAE EGLFFMETSALDSTNV+ AFE+VIREIYSNISRK LNSD+Y
Sbjct: 128 DLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSY 187

Query: 190 KAELSVNRVTLVKDGANSSKGSMMDFSCCAK 220
           K EL+VNRV+LVK   N ++G+   FSCC++
Sbjct: 188 KEELTVNRVSLVK---NENEGTKT-FSCCSR 214

Intracellular vesicle trafficking and protein transport. Binds GTP and GDP and possesses intrinsic GTPase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIP0|RAA5D_ARATH Ras-related protein RABA5d OS=Arabidopsis thaliana GN=RABA5D PE=2 SV=1

 Score =  338 bits (867), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 168/212 (79%), Positives = 189/212 (89%), Gaps = 2/212 (0%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           GGEEYLFKIV+IGDSAVGKSNLLSR+ARNEF+++SKATIGVEFQTQ ++I+GKEVKAQIW
Sbjct: 7   GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQNMEIEGKEVKAQIW 66

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
           DTAGQERFRAVTSAYYRGAVGALVVYDI+RRS+F+SV RWL+EL TH DT V RMLVGNK
Sbjct: 67  DTAGQERFRAVTSAYYRGAVGALVVYDISRRSTFESVGRWLDELKTHSDTTVARMLVGNK 126

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 188
           CDL+SIR VS EEGK+LAE EGLFFMETSALDSTNV+ AFE+VIR+IY+NISRK LNSD 
Sbjct: 127 CDLESIRAVSVEEGKALAETEGLFFMETSALDSTNVKTAFEMVIRDIYTNISRKQLNSDT 186

Query: 189 YKAELSV-NRVTLVKDGANSSKGSMMDFSCCA 219
           YK ELS+ NRV+LVKD  N S      FSCC+
Sbjct: 187 YKTELSMKNRVSLVKDD-NKSSTQGFGFSCCS 217

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P19892|RAA5E_ARATH Ras-related protein RABA5e OS=Arabidopsis thaliana GN=RABA5E PE=2 SV=1

 Score =  335 bits (859), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 165/211 (78%), Positives = 189/211 (89%), Gaps = 1/211 (0%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           G EEYLFKIV+IGDSAVGKSNLLSR+ARNEF +NSKATIGVEFQTQ ++I+GKEVKAQIW
Sbjct: 7   GREEYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIW 66

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
           DTAGQERFRAVTSAYYRGAVGALVVYDITRR++F+SV RWL+EL  H DT V RMLVGNK
Sbjct: 67  DTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNK 126

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 188
           CDL++IR VS EEGK+LAEEEGLFF+ETSALDSTNV+ AFE+VI +IY+N+SRK LNSD 
Sbjct: 127 CDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDT 186

Query: 189 YKAELSVNRVTLVKDGANSSKGSMMDFSCCA 219
           YK EL+VNRV+LVKD  ++SK S   FSCC+
Sbjct: 187 YKDELTVNRVSLVKDDNSASKQS-SGFSCCS 216

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGK5|RAA5A_ARATH Ras-related protein RABA5a OS=Arabidopsis thaliana GN=RABA5A PE=2 SV=1

 Score =  277 bits (708), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 141/214 (65%), Positives = 168/214 (78%), Gaps = 9/214 (4%)

Query: 11  EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDT 70
           E+YLFKIVLIGDSAVGKSNLL+RFAR+EF  NSK+TIGVEFQTQ +DI+GKE+KAQIWDT
Sbjct: 11  EDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEIKAQIWDT 70

Query: 71  AGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCD 130
           AGQERFRAVTSAYYRGAVGAL+VYDI+RR +F S+ RWL EL TH D  V  +LVGNK D
Sbjct: 71  AGQERFRAVTSAYYRGAVGALLVYDISRRQTFHSIGRWLNELHTHSDMNVVTILVGNKSD 130

Query: 131 LDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAY- 189
           L  +R+VST EGK+LAE +GLFFMETSALDS+NV AAFE V++EIY+ +SRKV++S    
Sbjct: 131 LKDLREVSTAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNILSRKVMSSQELN 190

Query: 190 ---KAELSV-NRVTLVKDGANSSKGSMMDFSCCA 219
               A LS   +V +  DG    +G      CC+
Sbjct: 191 KQDPASLSNGKKVVIPSDG----QGEFKKGGCCS 220

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40191|RB11A_LOTJA Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1

 Score =  250 bits (638), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 119/186 (63%), Positives = 151/186 (81%), Gaps = 5/186 (2%)

Query: 7   GGGGE-----EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK 61
           GG G+     +Y+FK+VLIGDSAVGKS +L+RFARNEF  +SK+TIGVEFQT+ + ID K
Sbjct: 5   GGYGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHK 64

Query: 62  EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG 121
            VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R +FD + RWLEEL  H D  + 
Sbjct: 65  TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIV 124

Query: 122 RMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISR 181
            +L+GNKCDL + RDV TE+ K  AE+EGLFF+ETSAL++TNVE+AF  V+ EIY+ +++
Sbjct: 125 IILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNK 184

Query: 182 KVLNSD 187
           K L +D
Sbjct: 185 KSLAAD 190

Lotus japonicus (taxid: 34305)

>sp|P25766|RLGP1_ORYSJ Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2

 Score =  249 bits (637), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 125/186 (67%), Positives = 147/186 (79%), Gaps = 7/186 (3%)

Query: 6   RGGG--GE-----EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI 58
           RGGG  GE     +Y+FK+VLIGDSAVGKS LL+RFARNEF+ +SKATIGVEFQT+ + I
Sbjct: 3   RGGGSYGEVGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHI 62

Query: 59  DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT 118
           D + VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R SFD V RWLEEL  H D 
Sbjct: 63  DARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADK 122

Query: 119 AVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
            +  ML+GNK DL ++R V TE+ K  AE E LFFMETSAL+STNVE AF  V+ EIY  
Sbjct: 123 NIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRI 182

Query: 179 ISRKVL 184
           +S+K L
Sbjct: 183 VSKKNL 188

May play an important role in plant growth and development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LH50|RAA4D_ARATH Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1

 Score =  247 bits (631), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 123/214 (57%), Positives = 156/214 (72%), Gaps = 10/214 (4%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +Y+FK+VLIGDSAVGK+ LL+RFARNEF  +SKATIGVEFQT+ + ID K VKAQIWDTA
Sbjct: 13  DYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVIDNKTVKAQIWDTA 72

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQER+RAVTSAYYRGAVGA++VYD+T+R SFD + +WLEEL  H D  +  ML+GNKCDL
Sbjct: 73  GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKNIVIMLIGNKCDL 132

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKA 191
            S+R V TE+ +  A+ E LFFMETSAL++TNVE AF  ++ EIY  IS+K L +D   A
Sbjct: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKSLTADDDDA 192

Query: 192 E-----LSVNRVTLVKDGANSSKGSMMDFSCCAK 220
           +     L   R+ +  +  +  +G      CC K
Sbjct: 193 DGNSSLLKGTRIIIPSEQESGKRG-----GCCGK 221

Intracellular vesicle trafficking and protein transport. Plays an important role in the regulation of pollen tube tip growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39572|YPTC6_CHLRE Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1

 Score =  247 bits (631), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 121/208 (58%), Positives = 157/208 (75%), Gaps = 1/208 (0%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +YLFK+VLIGDS VGKSNLLSRF RNEF   SK+TIGVEF T+ + +DGK +KAQIWDTA
Sbjct: 10  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 69

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQER+RA+TSAYYRGAVGAL+VYDIT+  +F++V+RWL+EL  H D+ +  MLVGNK DL
Sbjct: 70  GQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDL 129

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKA 191
             +RDV TE  ++  E EGL F+ETSAL+STNVE AF+ ++ EIY  +S+KVL+S+  + 
Sbjct: 130 KHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRP 189

Query: 192 ELSVNRVTLVKDGANSSKGSMMDFSCCA 219
           ++   R  +V D A+   G      CC+
Sbjct: 190 KIGEGRDVIVIDNAHDDGGKKKG-GCCS 216

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q9FE79|RAA4C_ARATH Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1

 Score =  243 bits (619), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/173 (67%), Positives = 139/173 (80%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +Y+FK+VLIGDSAVGKS LL+RF+RNEF   SKATIGVEFQT+ ++ID K +KAQIWDTA
Sbjct: 13  DYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEIDRKTIKAQIWDTA 72

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQER+RAVTSAYYRGAVGA++VYDIT+R SFD V RWLEEL  H D  +  ML+GNK DL
Sbjct: 73  GQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKTDL 132

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 184
            ++R V TE+ K  A+ E LFFMETSALDS NVE +F  V+ EIY  +S+K L
Sbjct: 133 GTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIVSKKNL 185

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
255584671	218	protein with unknown function [Ricinus c	0.940	0.949	0.875	1e-102
359806412	213	ras-related protein RABA5b-like [Glycine	0.959	0.990	0.828	8e-99
449463200	215	PREDICTED: ras-related protein RABA5e-li	0.945	0.967	0.839	2e-98
303730	215	GTP-binding protein [Pisum sativum] gi|7	0.972	0.995	0.824	3e-98
224069898	218	predicted protein [Populus trichocarpa]	0.922	0.931	0.864	3e-97
1370154	219	RAB11G [Lotus japonicus]	0.959	0.963	0.805	1e-95
356569119	219	PREDICTED: ras-related protein RABA5d-li	0.963	0.968	0.792	2e-95
225467903	215	PREDICTED: ras-related protein RABA5e-li	0.977	1.0	0.777	3e-95
356527445	219	PREDICTED: ras-related protein RABA5d-li	0.963	0.968	0.792	8e-95
359478027	302	PREDICTED: ras-related protein RABA5c-li	0.954	0.695	0.804	1e-94

>gi|255584671|ref|XP_002533058.1| protein with unknown function [Ricinus communis] gi|223527156|gb|EEF29328.1| protein with unknown function [Ricinus communis]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/209 (87%), Positives = 197/209 (94%), Gaps = 2/209 (0%)

Query: 11  EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDT 70
           EEYLFKIVLIGDSAVGKSNLL+RFARNEFDSNSKATIGVEFQTQVVDI+GKE+KAQIWDT
Sbjct: 11  EEYLFKIVLIGDSAVGKSNLLARFARNEFDSNSKATIGVEFQTQVVDIEGKEIKAQIWDT 70

Query: 71  AGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCD 130
           AGQERFRAVTSAYYRGAVGAL+VYDITRRSSFDSVKRWLEEL+THCDT   RMLVGNKCD
Sbjct: 71  AGQERFRAVTSAYYRGAVGALIVYDITRRSSFDSVKRWLEELSTHCDTTAARMLVGNKCD 130

Query: 131 LDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYK 190
           L++IR+VS EEGK+LAEEE LFFMETSALDSTNVEAAFEVVIREIY N+SRK LNSD+YK
Sbjct: 131 LENIREVSREEGKTLAEEESLFFMETSALDSTNVEAAFEVVIREIYHNMSRKTLNSDSYK 190

Query: 191 AELSVNRVTLVKDGANSSKGSMMDFSCCA 219
           AEL+VNRV+LVK+ ANSSK S   FSCCA
Sbjct: 191 AELTVNRVSLVKNNANSSKQS--SFSCCA 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806412|ref|NP_001240985.1| ras-related protein RABA5b-like [Glycine max] gi|345651732|gb|AEO14876.1| rfls8 protein [Glycine max]

 Score =  365 bits (936), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 179/216 (82%), Positives = 200/216 (92%), Gaps = 5/216 (2%)

Query: 5   ERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVK 64
           E G GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQ+V+IDGKE+K
Sbjct: 3   ENGEGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQLVEIDGKEIK 62

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRML 124
           AQIWDTAGQERFRAVTSAYYRGAVGALVVYDI+RR +FDS+KRWL+ELTT  D+ V RML
Sbjct: 63  AQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRGTFDSIKRWLQELTTQNDSTVARML 122

Query: 125 VGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 184
           VGNKCDL++IR+VSTEEGKSLAEEEGLFFMETSALD+TNV+ AFE+VIREIY+NISRKVL
Sbjct: 123 VGNKCDLENIREVSTEEGKSLAEEEGLFFMETSALDATNVQTAFEIVIREIYNNISRKVL 182

Query: 185 NSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCAK 220
           NSD+YKAELSVNRV+LV +GA S +G     SCC++
Sbjct: 183 NSDSYKAELSVNRVSLV-NGAGSKQGP----SCCSR 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463200|ref|XP_004149322.1| PREDICTED: ras-related protein RABA5e-like [Cucumis sativus] gi|449507589|ref|XP_004163075.1| PREDICTED: ras-related protein RABA5e-like [Cucumis sativus]

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/212 (83%), Positives = 195/212 (91%), Gaps = 4/212 (1%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFD+NSKATIGVEFQTQVV+IDGKEVKAQIW
Sbjct: 8   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQTQVVEIDGKEVKAQIW 67

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
           DTAGQERFRAVTSAYYRGAVGAL+VYDITRR++FDS KRWL+EL  HCDTA  RMLVGNK
Sbjct: 68  DTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSAKRWLDELGVHCDTATVRMLVGNK 127

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 188
           CDL++IRDVS EEGK+LAEEEGLFFMETSALDSTNV  AFE+VIREIY+N+SRKVLNSD+
Sbjct: 128 CDLENIRDVSVEEGKNLAEEEGLFFMETSALDSTNVRTAFELVIREIYNNVSRKVLNSDS 187

Query: 189 YKAELSVNRVTLVKDGANSSKGSMMDFSCCAK 220
           YKAELS NRV+L   GA+S KG    FSCC++
Sbjct: 188 YKAELSENRVSLADGGASSKKG----FSCCSQ 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|303730|dbj|BAA02108.1| GTP-binding protein [Pisum sativum] gi|738933|prf||2001457A GTP-binding protein

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 178/216 (82%), Positives = 200/216 (92%), Gaps = 2/216 (0%)

Query: 4   EERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEV 63
           +E G G EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQ V+IDGKEV
Sbjct: 2   DENGDGAEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQTVEIDGKEV 61

Query: 64  KAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRM 123
           KAQIWDTAGQERFRAVTSAYYRGA GALVVYDI+RR +FDS+KRWL+ELTT  D+ V RM
Sbjct: 62  KAQIWDTAGQERFRAVTSAYYRGAFGALVVYDISRRGTFDSIKRWLDELTTQNDSTVARM 121

Query: 124 LVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 183
           LVGNKCDL+S+R+VSTEEGK+ AEEEGLFFMETSALDSTNV+ AFE+VIREIY+NISRKV
Sbjct: 122 LVGNKCDLESLREVSTEEGKAFAEEEGLFFMETSALDSTNVQKAFEIVIREIYNNISRKV 181

Query: 184 LNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCA 219
           LNSD+YKAELSVNRV+LV +GA S K ++++FSCC+
Sbjct: 182 LNSDSYKAELSVNRVSLV-NGAGSKK-NLLNFSCCS 215

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069898|ref|XP_002303077.1| predicted protein [Populus trichocarpa] gi|222844803|gb|EEE82350.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 178/206 (86%), Positives = 193/206 (93%), Gaps = 3/206 (1%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFKIV+IGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE+KAQIWDTAG
Sbjct: 14  YLFKIVVIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEIKAQIWDTAG 73

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFRAVTSAYYRGAVGAL+VYDITRR+SFDSVKRWL+EL THCDTA+ RMLVGNKCDLD
Sbjct: 74  QERFRAVTSAYYRGAVGALIVYDITRRTSFDSVKRWLDELGTHCDTAIARMLVGNKCDLD 133

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
           SIR+VS +EGKSLAEEE LFFMETSALDSTNVEAAFEVVIREIY+N+SRK+LNSD+YKAE
Sbjct: 134 SIREVSRDEGKSLAEEESLFFMETSALDSTNVEAAFEVVIREIYNNMSRKILNSDSYKAE 193

Query: 193 LSVNRVTLVKDGANSSKGSMMDFSCC 218
           L+ NRV+LV +G  SSK     FSCC
Sbjct: 194 LTANRVSLV-NGDTSSKK--YGFSCC 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1370154|emb|CAA98183.1| RAB11G [Lotus japonicus]

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 170/211 (80%), Positives = 191/211 (90%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           GGEEYLFKIV+IGDSAVGKSNLLSR+ARNEF+ +SKATIGVEFQTQ ++ID KEVKAQIW
Sbjct: 8   GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQSLEIDSKEVKAQIW 67

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
           DTAGQERFRAVTSAYYRGAVGAL+VYDITRR++FDSV RWL+EL THCDT V  MLVGNK
Sbjct: 68  DTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSVSRWLDELKTHCDTTVAMMLVGNK 127

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 188
           CDL++IR VS EEGKSLAE +GLFFMETSALDSTNV  AFE+VIREIY+N+SRKVLNSD 
Sbjct: 128 CDLENIRAVSIEEGKSLAEAQGLFFMETSALDSTNVRTAFEMVIREIYNNVSRKVLNSDT 187

Query: 189 YKAELSVNRVTLVKDGANSSKGSMMDFSCCA 219
           YKAELSV+RV+LV +GA +SK S   FSCC+
Sbjct: 188 YKAELSVDRVSLVNNGAATSKQSKSYFSCCS 218

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569119|ref|XP_003552753.1| PREDICTED: ras-related protein RABA5d-like [Glycine max]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/212 (79%), Positives = 194/212 (91%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           GGEEYLFKIV+IGDSAVGKSNLLSR+ARNEF+ +SKATIGVEFQTQ ++ID KEVKAQIW
Sbjct: 8   GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQCLEIDSKEVKAQIW 67

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
           DTAGQERFRAVTSAYYRGAVGAL+VYDI+RR++FDSV RWL+EL THCDT V  MLVGNK
Sbjct: 68  DTAGQERFRAVTSAYYRGAVGALIVYDISRRTTFDSVGRWLDELKTHCDTTVAMMLVGNK 127

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 188
           CDL++IR VS +EGKSLAE EGLFFMETSALDSTNV+ AFE+VIREIY+N+SRKVLNS+ 
Sbjct: 128 CDLENIRAVSVDEGKSLAEAEGLFFMETSALDSTNVKTAFEMVIREIYTNVSRKVLNSET 187

Query: 189 YKAELSVNRVTLVKDGANSSKGSMMDFSCCAK 220
           YKAELSVNRV+LV +GA++SK +   FSCC++
Sbjct: 188 YKAELSVNRVSLVNNGASTSKQNQPYFSCCSR 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225467903|ref|XP_002263362.1| PREDICTED: ras-related protein RABA5e-like [Vitis vinifera] gi|147834571|emb|CAN69655.1| hypothetical protein VITISV_000615 [Vitis vinifera] gi|296080913|emb|CBI18743.3| unnamed protein product [Vitis vinifera]

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 171/220 (77%), Positives = 199/220 (90%), Gaps = 5/220 (2%)

Query: 1   MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG 60
           MG+E     GEEYLFKIV+IGDSAVGKSNLLSR+ARNEFD +SKATIGVEFQTQ VDIDG
Sbjct: 1   MGEE-----GEEYLFKIVIIGDSAVGKSNLLSRYARNEFDLHSKATIGVEFQTQCVDIDG 55

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAV 120
           KEVKAQIWDTAGQERFRAVTSAYYRGA GAL+VYDI+RRS+F+S+ RWL+EL  HCDT V
Sbjct: 56  KEVKAQIWDTAGQERFRAVTSAYYRGAFGALLVYDISRRSTFESIARWLDELKIHCDTTV 115

Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
            RMLVGNKCDL++IRDVSTEEGK+LAE EGLFFMETSALD+TNV+ AFE+VIREI++N+S
Sbjct: 116 ARMLVGNKCDLENIRDVSTEEGKNLAEAEGLFFMETSALDATNVKTAFEMVIREIFNNVS 175

Query: 181 RKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCAK 220
           RKVL+SD+YKAELSVNRV+LV +GA +SK + +  SCC++
Sbjct: 176 RKVLHSDSYKAELSVNRVSLVNNGAAASKQNQIYSSCCSR 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527445|ref|XP_003532321.1| PREDICTED: ras-related protein RABA5d-like [Glycine max] gi|499068|emb|CAA54506.1| GTPase [Glycine max]

 Score =  352 bits (902), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 168/212 (79%), Positives = 193/212 (91%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           GGEEYLFKIV+IGDSAVGKSNLLSR+ARNEF+ +SKATIGVEFQTQ ++ID KEVKAQIW
Sbjct: 8   GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQCLEIDSKEVKAQIW 67

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
           DTAGQERFRAVTSAYYRGAVGAL+VYDI+RR++FDSV RWL+EL THCDT V  MLVGNK
Sbjct: 68  DTAGQERFRAVTSAYYRGAVGALIVYDISRRTTFDSVGRWLDELKTHCDTTVAMMLVGNK 127

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 188
           CDL++IR VS +EGKSLAE EGLFFMETSALDSTNV+ AFE+VIREIY+N+SRKVLNS+ 
Sbjct: 128 CDLENIRAVSIDEGKSLAEAEGLFFMETSALDSTNVKMAFEMVIREIYNNVSRKVLNSET 187

Query: 189 YKAELSVNRVTLVKDGANSSKGSMMDFSCCAK 220
           YKAELSVNRV+LV +GA +SK +   FSCC++
Sbjct: 188 YKAELSVNRVSLVNNGAATSKQNQTYFSCCSR 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478027|ref|XP_002264559.2| PREDICTED: ras-related protein RABA5c-like isoform 2 [Vitis vinifera]

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 169/210 (80%), Positives = 193/210 (91%)

Query: 10  GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWD 69
           GEEYLFK+V+IGDSAVGKSNLLSR+ARNEF+ NSKATIGVEFQTQ ++IDGKEVKAQIWD
Sbjct: 93  GEEYLFKVVIIGDSAVGKSNLLSRYARNEFNINSKATIGVEFQTQSMEIDGKEVKAQIWD 152

Query: 70  TAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKC 129
           TAGQERFRAVTSAYYRGAVGALVVYDI+RRS+FDSV RWL+EL TH +T V RMLVGNK 
Sbjct: 153 TAGQERFRAVTSAYYRGAVGALVVYDISRRSTFDSVARWLDELKTHSETTVARMLVGNKS 212

Query: 130 DLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAY 189
           DL++IRDVS EEGKSLAE EGLFF+ETSALDSTNV+ AFE+VIREIY+NISRKVLNSD+Y
Sbjct: 213 DLENIRDVSVEEGKSLAEAEGLFFIETSALDSTNVKKAFEIVIREIYNNISRKVLNSDSY 272

Query: 190 KAELSVNRVTLVKDGANSSKGSMMDFSCCA 219
           KAELSVNRV+LV +GA+ +K +   +SCC+
Sbjct: 273 KAELSVNRVSLVSNGADGAKQANSRYSCCS 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2079631	217	RABA5b "RAB GTPase homolog A5B	0.940	0.953	0.788	1.3e-84
TAIR|locus:2041036	214	ARA4 [Arabidopsis thaliana (ta	0.927	0.953	0.788	5.8e-82
TAIR|locus:2065858	219	RABA5d "RAB GTPase homolog A5D	0.936	0.940	0.788	1.2e-81
TAIR|locus:2169053	221	RABA5a "RAB GTPase homolog A5A	0.922	0.918	0.660	5.8e-66
TAIR|locus:2082269	222	RABA4D "RAB GTPase homolog A4D	0.922	0.914	0.577	3.5e-59
TAIR|locus:2102777	217	RABA2c "RAB GTPase homolog A2C	0.931	0.944	0.572	6.6e-58
TAIR|locus:2024992	214	RABA2b "RAB GTPase homolog A2B	0.9	0.925	0.585	8.4e-58
TAIR|locus:2152753	223	RABA4C "RAB GTPase homolog A4C	0.918	0.905	0.597	8.4e-58
TAIR|locus:2168469	217	RABA2D "RAB GTPase homolog A2D	0.927	0.940	0.574	1.1e-57
ZFIN|ZDB-GENE-041114-53	215	rab11a "RAB11a, member RAS onc	0.918	0.939	0.574	1.1e-57

TAIR|locus:2079631 RABA5b "RAB GTPase homolog A5B" [Arabidopsis thaliana (taxid:3702)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 164/208 (78%), Positives = 191/208 (91%)

Query:    13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
             YLFKIVLIGDSAVGKSNLLSRF+R+EFD+NSKATIGVEFQTQ+V+I+GKEVKAQIWDTAG
Sbjct:    11 YLFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIEGKEVKAQIWDTAG 70

Query:    73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
             QERFRAVTSAYYRGA GAL+VYDITR  +F+SVKRWL+EL THCDTAV +MLVGNKCDL+
Sbjct:    71 QERFRAVTSAYYRGAFGALIVYDITRGDTFESVKRWLQELNTHCDTAVAQMLVGNKCDLE 130

Query:   133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
              IR VS EEGK+LAEEEGLFFMETSALD+TNV+ AFE+VIREI++N+SRK+LNSDAYKAE
Sbjct:   131 DIRAVSVEEGKALAEEEGLFFMETSALDATNVDKAFEIVIREIFNNVSRKLLNSDAYKAE 190

Query:   193 LSVNRVTLVKDGANSSKGSMMDFSCCAK 220
             LSVNRV+LV +  + S+ S  + SCC++
Sbjct:   191 LSVNRVSLVNN-QDGSESSWRNPSCCSR 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2041036 ARA4 [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 164/208 (78%), Positives = 186/208 (89%)

Query:    13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
             YLFKIV+IGDSAVGKSNLL+R+ARNEF+ NSKATIGVEFQTQ + IDGKEVKAQIWDTAG
Sbjct:    11 YLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAG 70

Query:    73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
             QERFRAVTSAYYRGAVGALVVYDITR S+F++V RWL+EL TH DT V +ML+GNKCDL+
Sbjct:    71 QERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLE 130

Query:   133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
             SIR VS EEGKSLAE EGLFFMETSALDSTNV+ AFE+VIREIYSNISRK LNSD+YK E
Sbjct:   131 SIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEE 190

Query:   193 LSVNRVTLVKDGANSSKGSMMDFSCCAK 220
             L+VNRV+LVK   N ++G+   FSCC++
Sbjct:   191 LTVNRVSLVK---NENEGTKT-FSCCSR 214

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005795 "Golgi stack" evidence=IDA

GO:0005798 "Golgi-associated vesicle" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0009408 "response to heat" evidence=IEP

GO:0048219 "inter-Golgi cisterna vesicle-mediated transport" evidence=TAS

TAIR|locus:2065858 RABA5d "RAB GTPase homolog A5D" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 164/208 (78%), Positives = 185/208 (88%)

Query:    13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
             YLFKIV+IGDSAVGKSNLLSR+ARNEF+++SKATIGVEFQTQ ++I+GKEVKAQIWDTAG
Sbjct:    11 YLFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQNMEIEGKEVKAQIWDTAG 70

Query:    73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
             QERFRAVTSAYYRGAVGALVVYDI+RRS+F+SV RWL+EL TH DT V RMLVGNKCDL+
Sbjct:    71 QERFRAVTSAYYRGAVGALVVYDISRRSTFESVGRWLDELKTHSDTTVARMLVGNKCDLE 130

Query:   133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
             SIR VS EEGK+LAE EGLFFMETSALDSTNV+ AFE+VIR+IY+NISRK LNSD YK E
Sbjct:   131 SIRAVSVEEGKALAETEGLFFMETSALDSTNVKTAFEMVIRDIYTNISRKQLNSDTYKTE 190

Query:   193 LSV-NRVTLVKDGANSSKGSMMDFSCCA 219
             LS+ NRV+LVKD  N S      FSCC+
Sbjct:   191 LSMKNRVSLVKDD-NKSSTQGFGFSCCS 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2169053 RABA5a "RAB GTPase homolog A5A" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 140/212 (66%), Positives = 166/212 (78%)

Query:    13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
             YLFKIVLIGDSAVGKSNLL+RFAR+EF  NSK+TIGVEFQTQ +DI+GKE+KAQIWDTAG
Sbjct:    13 YLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEIKAQIWDTAG 72

Query:    73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
             QERFRAVTSAYYRGAVGAL+VYDI+RR +F S+ RWL EL TH D  V  +LVGNK DL 
Sbjct:    73 QERFRAVTSAYYRGAVGALLVYDISRRQTFHSIGRWLNELHTHSDMNVVTILVGNKSDLK 132

Query:   133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYK-- 190
              +R+VST EGK+LAE +GLFFMETSALDS+NV AAFE V++EIY+ +SRKV++S      
Sbjct:   133 DLREVSTAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNILSRKVMSSQELNKQ 192

Query:   191 --AELSVNR-VTLVKDGANSSKGSMMDFSCCA 219
               A LS  + V +  DG    +G      CC+
Sbjct:   193 DPASLSNGKKVVIPSDG----QGEFKKGGCCS 220

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2082269 RABA4D "RAB GTPase homolog A4D" [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 123/213 (57%), Positives = 155/213 (72%)

Query:    13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
             Y+FK+VLIGDSAVGK+ LL+RFARNEF  +SKATIGVEFQT+ + ID K VKAQIWDTAG
Sbjct:    14 YVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVIDNKTVKAQIWDTAG 73

Query:    73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
             QER+RAVTSAYYRGAVGA++VYD+T+R SFD + +WLEEL  H D  +  ML+GNKCDL 
Sbjct:    74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKNIVIMLIGNKCDLG 133

Query:   133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
             S+R V TE+ +  A+ E LFFMETSAL++TNVE AF  ++ EIY  IS+K L +D   A+
Sbjct:   134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKSLTADDDDAD 193

Query:   193 -----LSVNRVTLVKDGANSSKGSMMDFSCCAK 220
                  L   R+ +  +  +  +G      CC K
Sbjct:   194 GNSSLLKGTRIIIPSEQESGKRGG-----CCGK 221

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0070382 "exocytic vesicle" evidence=IDA

GO:0048868 "pollen tube development" evidence=IGI;RCA

GO:0019900 "kinase binding" evidence=IPI

GO:0080092 "regulation of pollen tube growth" evidence=IMP

GO:0090404 "pollen tube tip" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

TAIR|locus:2102777 RABA2c "RAB GTPase homolog A2C" [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 119/208 (57%), Positives = 157/208 (75%)

Query:    13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
             YLFKIVLIGDS VGKSN+LSRF RNEF   SK+TIGVEF T+   ++GK +KAQIWDTAG
Sbjct:    11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAG 70

Query:    73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
             QER+RA+TSAYYRGAVGAL+VYDIT+R +FD+V RWL EL  H D+ +  M+ GNK DL+
Sbjct:    71 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 130

Query:   133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNS-DAYKA 191
              +R V+ E+G+SLAE+EGL F+ETSAL++TNVE AF+ ++ EIY  IS+K L + +A  A
Sbjct:   131 HLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAA 190

Query:   192 ELSVNRVTLVKDGANSSKGSMMDFSCCA 219
               ++       +  ++S G+    +CC+
Sbjct:   191 NSAIPGQGTTINVDDTSGGAKR--ACCS 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2024992 RABA2b "RAB GTPase homolog A2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 117/200 (58%), Positives = 151/200 (75%)

Query:    13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
             YLFKIVLIGDS VGKSN+LSRF RNEF   SK+TIGVEF T+ + ++GK VKAQIWDTAG
Sbjct:    11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG 70

Query:    73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
             QER+RA+TSAYYRGAVGAL+VYDIT+R +F++V RWL EL  H D+ +  M+ GNK DL+
Sbjct:    71 QERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHADSNIVIMMAGNKSDLN 130

Query:   133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
              +R V+ E+G+SLAE+EGL F+ETSAL++TN+E AF+ ++ EIY  IS+K L +      
Sbjct:   131 HLRSVADEDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIYHIISKKALAAQEAAGN 190

Query:   193 LSVNRVTL-VKDG-ANSSKG 210
             L      + + D  A + KG
Sbjct:   191 LPGQGTAINISDSSATNRKG 210

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2152753 RABA4C "RAB GTPase homolog A4C" [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 126/211 (59%), Positives = 154/211 (72%)

Query:    13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
             Y+FK+VLIGDSAVGKS LL+RF+RNEF   SKATIGVEFQT+ ++ID K +KAQIWDTAG
Sbjct:    14 YVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEIDRKTIKAQIWDTAG 73

Query:    73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
             QER+RAVTSAYYRGAVGA++VYDIT+R SFD V RWLEEL  H D  +  ML+GNK DL 
Sbjct:    74 QERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKTDLG 133

Query:   133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK--VLNSDAYK 190
             ++R V TE+ K  A+ E LFFMETSALDS NVE +F  V+ EIY  +S+K  V N +   
Sbjct:   134 TLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIVSKKNLVANEEGES 193

Query:   191 A-ELSVNRVT-LVKDGANS-SKGSMMDFSCC 218
               + S+ + T +V  G  + SKG      CC
Sbjct:   194 GGDSSLLQGTKIVVAGEETESKGK----GCC 220

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2168469 RABA2D "RAB GTPase homolog A2D" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 120/209 (57%), Positives = 155/209 (74%)

Query:    13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
             YLFKIVLIGDS VGK+N+LSRF RNEF   SK+TIGVEF T+ + ++GK VKAQIWDTAG
Sbjct:    11 YLFKIVLIGDSGVGKTNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG 70

Query:    73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
             QER+RA+TSAYYRGAVGAL+VYDIT+R +FD+V RWL EL  H D+ +  M+ GNK DL+
Sbjct:    71 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKADLN 130

Query:   133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNS-DAYKA 191
              +R V+ E+G++LAE EGL F+ETSAL++TNVE AF+ V+ EIY  IS+K L + +A  A
Sbjct:   131 HLRSVAEEDGQTLAETEGLSFLETSALEATNVEKAFQTVLAEIYHIISKKALAAQEAAAA 190

Query:   192 ELSV-NRVTLVKDGANSSKGSMMDFSCCA 219
               ++  + T +     S  G      CC+
Sbjct:   191 NSAIPGQGTTINVEDTSGAGKR---GCCS 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

ZFIN|ZDB-GENE-041114-53 rab11a "RAB11a, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 119/207 (57%), Positives = 154/207 (74%)

Query:    13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
             YLFK+VLIGDS VGKSNLLSRF RNEF+  SK+TIGVEF T+ + +DGK VKAQIWDTAG
Sbjct:    10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTVKAQIWDTAG 69

Query:    73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
             QER+RA+TSAYYRGAVGAL+VYDI +  ++++V+RWL+EL  H D+ +  MLVGNK DL 
Sbjct:    70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 129

Query:   133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
              +R V T+E ++ AE+ GL F+ETSALDSTNVE AF+ ++ EIY  +S+K + SD    +
Sbjct:   130 HLRAVPTDEARAFAEKNGLSFLETSALDSTNVETAFQTILTEIYRIVSQKQM-SDRRDND 188

Query:   193 LSV-NRVTLVKDGANSSKGSMMDFSCC 218
             +S  N V  ++     +K  M    CC
Sbjct:   189 MSPSNNVVSIQVQPTENKPKMQ---CC 212

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0001525 "angiogenesis" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0070121 "Kupffer's vesicle development" evidence=IMP

GO:0032402 "melanosome transport" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R9M7	RB11A_PONAB	No assigned EC number	0.5603	0.9318	0.9490	yes	no
P19892	RAA5E_ARATH	No assigned EC number	0.7819	0.9545	0.9633	no	no
Q40193	RB11C_LOTJA	No assigned EC number	0.5566	0.9181	0.9351	N/A	no
Q40191	RB11A_LOTJA	No assigned EC number	0.6397	0.8227	0.8008	N/A	no
P28187	RAA5C_ARATH	No assigned EC number	0.7914	0.9409	0.9672	no	no
Q2TA29	RB11A_BOVIN	No assigned EC number	0.5555	0.9318	0.9490	yes	no
Q9SIP0	RAA5D_ARATH	No assigned EC number	0.7924	0.9545	0.9589	no	no
P62491	RB11A_HUMAN	No assigned EC number	0.5603	0.9318	0.9490	yes	no
Q9SRS5	RAA5B_ARATH	No assigned EC number	0.7772	0.9863	1.0	yes	no
P17610	YPT3_SCHPO	No assigned EC number	0.6358	0.7863	0.8084	yes	no
Q01111	YPT3_NICPL	No assigned EC number	0.5545	0.9272	0.9357	N/A	no
Q5ZJN2	RB11A_CHICK	No assigned EC number	0.5673	0.9272	0.9444	yes	no
P22129	RB11B_DIPOM	No assigned EC number	0.5518	0.9181	0.9266	N/A	no
Q39572	YPTC6_CHLRE	No assigned EC number	0.5817	0.9409	0.9583	N/A	no
Q52NJ1	RB11A_PIG	No assigned EC number	0.5603	0.9318	0.9490	yes	no
Q39434	RB2BV_BETVU	No assigned EC number	0.5693	0.9227	0.9485	N/A	no
P62490	RB11A_CANFA	No assigned EC number	0.5603	0.9318	0.9490	yes	no
P62493	RB11A_RABIT	No assigned EC number	0.5603	0.9318	0.9490	yes	no
P62492	RB11A_MOUSE	No assigned EC number	0.5603	0.9318	0.9490	yes	no
P62494	RB11A_RAT	No assigned EC number	0.5603	0.9318	0.9490	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.II.3535.1 hypothetical protein (212 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-108
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-98
pfam00071	162	pfam00071, Ras, Ras family	3e-88
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	7e-86
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-84
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	4e-77
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	6e-74
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-73
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	3e-73
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-65
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-64
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-63
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	8e-63
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	5e-61
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	7e-61
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	7e-60
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	8e-60
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-52
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-52
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	5e-52
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-50
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-50
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	4e-49
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	5e-48
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-47
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	4e-47
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-46
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	5e-44
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-43
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	5e-43
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-42
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-42
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-41
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-41
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	4e-39
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-36
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-34
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	5e-34
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	6e-34
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-33
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-33
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-33
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	4e-33
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-33
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-32
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-32
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	7e-32
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	8e-32
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-31
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	3e-31
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	4e-30
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	4e-29
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	4e-29
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-28
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-28
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-28
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	8e-28
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	6e-27
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	9e-27
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-24
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	6e-24
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-23
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-23
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	3e-23
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	6e-22
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	1e-21
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	6e-21
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-19
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-19
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-19
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-19
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	9e-19
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-18
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-18
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-18
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-17
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	4e-17
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	4e-17
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	6e-17
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-16
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-15
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	4e-14
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	7e-14
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	7e-13
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	8e-13
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	5e-11
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-10
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-09
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	6e-09
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	7e-09
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	2e-08
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	8e-08
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	1e-07
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	2e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-07
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-06
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	5e-06
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	6e-06
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	8e-06
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-05
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	8e-05
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	8e-05
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	1e-04
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	3e-04
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	3e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	6e-04
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	7e-04
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	0.002
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	0.003

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  307 bits (788), Expect = e-108
 Identities = 113/165 (68%), Positives = 139/165 (84%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +YLFKIVLIGDS VGKSNLLSRF RNEF+ +SK+TIGVEF T+ + IDGK +KAQIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQER+RA+TSAYYRGAVGAL+VYDIT++S+F++V+RWL+EL  H D+ +  MLVGNK DL
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
             +R V TEE K+ AE+ GL F+ETSALD TNVE AF+ ++ EIY
Sbjct: 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  283 bits (726), Expect = 1e-98
 Identities = 99/164 (60%), Positives = 124/164 (75%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FKI+LIGDS VGKS+LLSRF   +F    K+TIGV+F+T+ +++DGK VK QIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFR++TS+YYRGAVGAL+VYDIT R SF++++ WL+EL  +    V  MLVGNK DL+  
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           R VS EE ++ AEE GL F ETSA  +TNVE AFE + REI   
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  257 bits (658), Expect = 3e-88
 Identities = 98/161 (60%), Positives = 121/161 (75%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+VL+GD  VGKS+LL RF +N+F      TIGV+F T+ +++DGK VK QIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR 135
           FRA+   YYRGA G L+VYDIT R SF++VK+WLEE+  H D  V  +LVGNKCDL+  R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 136 DVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
            VSTEEG++LA+E GL FMETSA  + NVE AFE + REI 
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  252 bits (646), Expect = 7e-86
 Identities = 113/173 (65%), Positives = 144/173 (83%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +YLFKIVLIGDS VGKSN+LSRF RNEF   SK+TIGVEF T+ + ++GK VKAQIWDTA
Sbjct: 10  DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 69

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQER+RA+TSAYYRGAVGAL+VYDIT+R +FD+V+RWL EL  H D+ +  M+ GNK DL
Sbjct: 70  GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDL 129

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 184
           + +R V+ E+G++LAE+EGL F+ETSAL++TNVE AF+ ++ EIY  IS+K L
Sbjct: 130 NHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKAL 182

Length = 216

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  246 bits (631), Expect = 3e-84
 Identities = 90/159 (56%), Positives = 120/159 (75%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FKIVLIGDS VGK++LL RF  N+F  N K+TIGV+F+++ +++DGK+VK QIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFR++TS+YYRGA GA++VYD+T R SF+++ +WL EL  +    +  +LVGNK DL+  
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173
           R VSTEE +  A+E GL F ETSA    NV+ AFE + R
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  229 bits (585), Expect = 4e-77
 Identities = 86/164 (52%), Positives = 124/164 (75%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +YLFK++LIGDS VGKS LL RF+ + F+ +  +TIG++F+ + +++DGK++K QIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR +T++YYRGA+G ++VYDIT   SF+++K W+  +  H    V RMLVGNKCD+
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +  R VS EEG++LA E G+ F+ETSA  + NVE AF  + ++I
Sbjct: 121 EEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  220 bits (563), Expect = 6e-74
 Identities = 83/162 (51%), Positives = 109/162 (67%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GDS+VGKS+++ RF +NEF  N ++TIG  F TQ V++D   VK +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+R++   YYRGA  A+VVYDIT   SF+  K W++EL  H    +   L GNK DL+S 
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
           R VSTEE +  A+E GL FMETSA    NV   F  + R++ 
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  220 bits (562), Expect = 1e-73
 Identities = 88/163 (53%), Positives = 121/163 (74%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIGDS VGKS LL RFA + +  +  +TIGV+F+ + +++DGK VK QIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +TS+YYRGA G ++VYD+T + SF++VK+WL+E+  +    V ++LVGNKCDL 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             + V   E K  A+E G+ F+ETSA ++TNVE AF  + REI
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  219 bits (559), Expect = 3e-73
 Identities = 91/167 (54%), Positives = 119/167 (71%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
            YLFK ++IGD+ VGKS LL +F    F      TIGVEF  +++ IDGK++K QIWDTA
Sbjct: 2   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTA 61

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQE FR++T +YYRGA GAL+VYDITRR +F+ +  WLE+   H ++ +  ML+GNKCDL
Sbjct: 62  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDL 121

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           +S R+VS EEG++ A E GL FMETSA  ++NVE AF    +EIY  
Sbjct: 122 ESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  199 bits (507), Expect = 2e-65
 Identities = 83/162 (51%), Positives = 115/162 (70%), Gaps = 2/162 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            KI+LIGDS VGKS+LL RF  + FD +  +TIGV+F+ + V +DGK+VK  IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
           RFR +TS+YYRGA G ++VYD+TRR +FD++  WL EL T+       +MLVGNK D ++
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R+V+ EEG+  A +  + F+ETSA     V+ AFE ++ +I
Sbjct: 121 -REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  197 bits (502), Expect = 1e-64
 Identities = 86/168 (51%), Positives = 120/168 (71%), Gaps = 4/168 (2%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           Y+FK ++IGD  VGKS LL +F   +F ++   TIGVEF T++++++G+++K QIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCD 130
           QERFRAVT +YYRGA GAL+VYDITRRS+++ +  WL +    T+ +T +   L+GNK D
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVI--FLIGNKAD 118

Query: 131 LDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           L++ RDV+ EE K  A+E GL F+E SA    NVE AF    ++IY N
Sbjct: 119 LEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  194 bits (495), Expect = 1e-63
 Identities = 85/165 (51%), Positives = 116/165 (70%), Gaps = 1/165 (0%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           ++LFKI+LIGDS VGK+ ++ RF    F      TIGV+F  + ++I GK VK QIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR +T +YYR A GA++ YDITRRSSF+SV  W+EE+  +  + V  +L+GNKCDL
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 132 DSIRDVSTEEGKSLAEEEGLFF-METSALDSTNVEAAFEVVIREI 175
           +  R+V  EE  +LAE  G+   +ETSA +S+NVE AF ++  E+
Sbjct: 121 EEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  194 bits (494), Expect = 8e-63
 Identities = 94/206 (45%), Positives = 120/206 (58%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK ++IGD+ VGKS LL +F    F      TIGVEF  +++ ID K +K QIWDTAG
Sbjct: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QE FR++T +YYRGA GAL+VYDITRR +F+ +  WLE+   H +  +  ML+GNKCDL 
Sbjct: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
             R VSTEEG+  A+E GL FME SA  + NVE AF     +IY  I   V +       
Sbjct: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNESYG 184

Query: 193 LSVNRVTLVKDGANSSKGSMMDFSCC 218
           + V    +          S     CC
Sbjct: 185 IKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  189 bits (481), Expect = 5e-61
 Identities = 93/207 (44%), Positives = 127/207 (61%), Gaps = 11/207 (5%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           ++LFK+++IGDS VGKS+LL RFA N F  +   TIGV+F+ + V+I+G+ VK QIWDTA
Sbjct: 4   DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTA 63

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR +TS YYRG  G +VVYD+T   SF +VKRWL+E+  +CD  V ++LVGNK D 
Sbjct: 64  GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDD-VCKVLVGNKNDD 122

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKA 191
              + V TE+    A + G+   ETSA ++ NVE        E+++ I+  VL   A K 
Sbjct: 123 PERKVVETEDAYKFAGQMGISLFETSAKENINVE--------EMFNCITELVL--RAKKD 172

Query: 192 ELSVNRVTLVKDGANSSKGSMMDFSCC 218
            L+  +     D     K S     CC
Sbjct: 173 NLAKQQQQQQNDVVKLPKNSKRKKRCC 199

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  189 bits (481), Expect = 7e-61
 Identities = 85/172 (49%), Positives = 120/172 (69%), Gaps = 4/172 (2%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI-DGKEVKAQIWDTA 71
           Y F++++IGDS VGKS+LL RF    F   S  T+GV+F +++++I  G  +K Q+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTH--CDTAVGRMLVGNKC 129
           GQERFR++T +YYR +VG L+V+DIT R SF+ V  WLEE  +H      V  +LVG+KC
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPV-FILVGHKC 119

Query: 130 DLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISR 181
           DL+S R V+ EE + LA++ G+ ++ETSA    NVE AFE++ +EIY  I R
Sbjct: 120 DLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKR 171

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  184 bits (470), Expect = 7e-60
 Identities = 69/161 (42%), Positives = 108/161 (67%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K+V +GD +VGK+++++RF  + FD+  +ATIG++F ++ + +D K V+ Q+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFR++  +Y R +  A+VVYDIT R SFD+  +W++++       V  +LVGNK DL   
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R VSTEEG+  A+E    F+ETSA    NV+  F+ + + +
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  184 bits (470), Expect = 8e-60
 Identities = 85/161 (52%), Positives = 109/161 (67%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK ++IG +  GKS LL +F  N+F  +S  TIGVEF ++VV++ GK VK QIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFR+VT +YYRGA GAL+VYDIT R SF+++  WL +  T     +  +LVGNK DL+  
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R+V+  E    A+E GL F+ETSAL   NVE AF    R I
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  166 bits (423), Expect = 1e-52
 Identities = 71/164 (43%), Positives = 107/164 (65%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           ++LFKIVLIG++ VGK+ L+ RF +  F     ATIGV+F  + V+I G+++K QIWDTA
Sbjct: 5   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR++T +YYR A   ++ YDIT   SF  +  WL E+  + +  V  +LVGNK DL
Sbjct: 65  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDL 124

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
              R+VS +  +  ++ + ++++ETSA +S NVE  F  +   +
Sbjct: 125 AERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  166 bits (423), Expect = 2e-52
 Identities = 83/162 (51%), Positives = 113/162 (69%), Gaps = 1/162 (0%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNS-KATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           FK++L+GDS VGK+ LL RF    F + S  AT+G++F  +VV +DG +VK QIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
           ERFR+VT AYYR A   L++YD+T +SSFD+++ WL E+  +  + V  ML+GNK D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V  E+G+ LA+E G+ FMETSA    NVE AF  V +E+
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  165 bits (419), Expect = 5e-52
 Identities = 64/155 (41%), Positives = 92/155 (59%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+G+  VGK++L+ R+  N+F+   ++T    F  + V+I GK +   IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+ A+   YYR A GA++VYDIT   SF  VK+W++EL       +  ++VGNK DL+  
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169
           R VS  E +  A+  G    ETSA     +E  F 
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFL 155

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  161 bits (409), Expect = 1e-50
 Identities = 70/156 (44%), Positives = 110/156 (70%)

Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           +FK+++IG+S+VGK++ L R+A + F S   +T+G++F+ + V  + K +K QIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
           ER+R +T+AYYRGA+G +++YDIT   SF++V+ W  ++ T+       +LVGNKCD++ 
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169
            R VS E G+ LA++ G  F E SA ++ NV+  FE
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVFE 156

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  161 bits (409), Expect = 2e-50
 Identities = 64/164 (39%), Positives = 105/164 (64%), Gaps = 5/164 (3%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K++++GDS VGK++L++++   +F +  KATIG +F T+ V +D + V  QIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKCD 130
           RF+++  A+YRGA   ++VYD+T   SF+S+  W +E               +++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 131 LDSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIR 173
           L+  R VST++ +   + +G + + ETSA ++ NV+ AFE + R
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIAR 164

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  159 bits (403), Expect = 4e-49
 Identities = 70/211 (33%), Positives = 115/211 (54%), Gaps = 17/211 (8%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQ 73
           FK+++IGD  VGK++++ R+    F  + KATIGV+F  +V++ D    V+ Q+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR----MLVGNKC 129
           ERF  +T  YY+GAVGA++V+D+TR S+F++V +W  +L +      G     +L+ NKC
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 130 DLDSIRD-VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 187
           DL   R     E+     +E G + + ETSA ++ N+E A   +++ I       + N  
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNI-------LKNDK 173

Query: 188 AYKAELSVNRVTLVKDGANSSKGSMMDFSCC 218
             ++        +      ++  S    SCC
Sbjct: 174 GLQSPEPDEDNVIDLKQETTTSKS---KSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  155 bits (393), Expect = 5e-48
 Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 5/159 (3%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FKI++IGDS VGK+ L  RF    F   ++ATIGV+F+ + V+IDG+ +K Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 75  RFR-AVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLD 132
           RFR ++   YYR     + VYD+T  +SF S+  W+EE   H     V R+LVGNKCDL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALD---STNVEAAF 168
               V T+  +  A+   +   ETSA D   + +VEA F
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  153 bits (390), Expect = 1e-47
 Identities = 71/161 (44%), Positives = 96/161 (59%), Gaps = 2/161 (1%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+V++G   VGKS L  RF   EF      TI   ++ Q+V +DG+     I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIV-VDGETYTLDILDTAGQEE 59

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDSI 134
           F A+   Y R   G ++VY IT R SF+ +K   E+ L       V  +LVGNKCDL++ 
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R VSTEEG++LAEE G  F+ETSA  + N++  F  ++REI
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  154 bits (390), Expect = 4e-47
 Identities = 81/171 (47%), Positives = 110/171 (64%), Gaps = 3/171 (1%)

Query: 1   MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG 60
           MG       G +  FKI+LIGDS VGKS+LL  F  +  + +   TIGV+F+ + + + G
Sbjct: 1   MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGG 59

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKR-WLEELTTHC-DT 118
           K +K  IWDTAGQERFR +TS+YYR A G ++VYD+TRR +F ++   W +E+  +  + 
Sbjct: 60  KRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQ 119

Query: 119 AVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169
              +MLVGNK D +S RDVS EEG +LA+E G  F+E SA    NVE  FE
Sbjct: 120 DCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE 170

Length = 211

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  150 bits (380), Expect = 3e-46
 Identities = 68/154 (44%), Positives = 105/154 (68%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           F+++LIGDS VGK+ LL RF  NEF S+  +TIGV+F+ + +++DG +V+ QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R++ +T  YYR A G  +VYDI+   S+  + +W+ ++  +    V ++L+GNK D +  
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168
           R V  E+G  LA+E G+ F ETSA  + N++ +F
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESF 154

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  146 bits (370), Expect = 5e-44
 Identities = 70/193 (36%), Positives = 97/193 (50%), Gaps = 18/193 (9%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
              FKIV++GD  VGK+ LL+R   +EF      TIG     + ++   + +K Q+WDTA
Sbjct: 3   MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTA 62

Query: 72  GQERFRAVTSAYYRGAVGALVVYDIT-RRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCD 130
           GQE +R++   YYRGA G L+VYD T R SS +  + WLEEL       V  +LVGNK D
Sbjct: 63  GQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKID 122

Query: 131 LDSIRDVSTEEGKSLA---------------EEEGLFFMETSALDST--NVEAAFEVVIR 173
           L   +  S E    L                E      +ETSA   T  NV   F+ ++R
Sbjct: 123 LFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLR 182

Query: 174 EIYSNISRKVLNS 186
           ++   I + VL +
Sbjct: 183 KLLEEIEKLVLKN 195

Length = 219

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  143 bits (362), Expect = 2e-43
 Identities = 68/180 (37%), Positives = 109/180 (60%), Gaps = 13/180 (7%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVV-----DIDG-----K 61
           +YL K++ +GDS VGK+  L R+  N+F+     T+G++F+ + V       DG      
Sbjct: 2   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAF 61

Query: 62  EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTH--CDTA 119
            V  Q+WDTAGQERFR++T+A++R A+G L+++D+T   SF +V+ W+ +L  H  C+  
Sbjct: 62  RVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENP 121

Query: 120 VGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
              +L+GNK DL   R+VS  + + LA++ G+ + ETSA    NVE A E ++  I   +
Sbjct: 122 -DIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 180

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  142 bits (359), Expect = 5e-43
 Identities = 69/171 (40%), Positives = 107/171 (62%), Gaps = 6/171 (3%)

Query: 10  GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWD 69
           G+  L K++L+GD  VGKS+L++R+  N+FD+    TIGVEF  + +++DG  V  QIWD
Sbjct: 1   GKSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWD 60

Query: 70  TAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR----MLV 125
           TAGQERFR++ + +YRG+   L+ + +    SF ++  W +E   + D         +++
Sbjct: 61  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 120

Query: 126 GNKCDLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREI 175
           GNK D+   R VSTEE ++   + G + + ETSA D+TNV AAFE  +R +
Sbjct: 121 GNKIDIPE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  142 bits (358), Expect = 2e-42
 Identities = 66/181 (36%), Positives = 120/181 (66%), Gaps = 1/181 (0%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           ++++IG   VGK++L+ RF  + F    K+T+GV+F+ + V++ GK+++ QIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR 135
           F ++TSAYYR A G ++VYDIT++ +FD + +W++ +  +       +LVGNK D ++ R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 136 DVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS 194
           +++ ++G+  A++  G+ F E SA D+ NV+  F  ++ +I   +   +L ++   + LS
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSILS 181

Query: 195 V 195
           +
Sbjct: 182 L 182

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  140 bits (355), Expect = 2e-42
 Identities = 72/163 (44%), Positives = 99/163 (60%), Gaps = 4/163 (2%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F  +   TI   ++ Q+  IDG+     I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIE-IDGEVCLLDILDTAGQE 59

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDLD 132
            F A+   Y R   G L+VY IT R SF+ +K++ E++      D  V  +LVGNKCDL+
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDD-VPIVLVGNKCDLE 118

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           S R VSTEEGK LA + G  F+ETSA +  NV+ AF  ++REI
Sbjct: 119 SERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  138 bits (350), Expect = 1e-41
 Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 4/160 (2%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNE-FDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
            KIV++GD  VGKS LL+R   N+   +  K      + T V++ DGK  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 74  ERFRAVTSAYYRGAVGALVVYDIT-RRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL 131
           E + A+   YYR    +L V+DI       + +  +  +E+  H ++ V  +LVGNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
                + T      A+  G   +  SA    N+++AF++V
Sbjct: 122 RD-AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 160

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  137 bits (348), Expect = 2e-41
 Identities = 70/163 (42%), Positives = 97/163 (59%), Gaps = 4/163 (2%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI   ++ Q+  IDG+     I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIE-IDGEVCLLDILDTAGQE 61

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDLD 132
            F A+   Y R   G L+VY IT R SF+ + ++ E++      D  V  +LVGNKCDL+
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDD-VPIVLVGNKCDLE 120

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           + R VSTEEGK LA + G  F+ETSA +  NV+ AF  ++REI
Sbjct: 121 NERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  133 bits (335), Expect = 4e-39
 Identities = 67/178 (37%), Positives = 104/178 (58%), Gaps = 9/178 (5%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +YL K +L+GDS VGK  +L+       +S     +G++++T  + +DG+ VK Q+WDT+
Sbjct: 4   DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTS 63

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQ RF  +  +Y RGA G ++VYDIT R SFD + RW++E+  H    V ++LVGN+  L
Sbjct: 64  GQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHL 122

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAY 189
              R V+TE+ ++ AE  G+ F E S L + N        I E ++ ++R VL     
Sbjct: 123 AFKRQVATEQAQAYAERNGMTFFEVSPLCNFN--------ITESFTELARIVLMRHGR 172

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  124 bits (314), Expect = 3e-36
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 5/165 (3%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K++ +G+S VGKS ++ R+    F S    TIG+++  + V +  KEV+   +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR-----MLVGNKCD 130
           +  V + +Y+   G L+VYD+T R SF+++  WL+E+               ++  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 131 LDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           L   R VS +EG+  AE +G  + ETSA     V   F+ +   I
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  120 bits (303), Expect = 2e-34
 Identities = 65/161 (40%), Positives = 91/161 (56%), Gaps = 2/161 (1%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KI ++G  +VGKS+L  +F    F  +   TI   F   +    G+E   +I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIT-YKGQEYHLEIVDTAGQDE 61

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDSI 134
           +  +   Y  G  G ++VY +T R SF+ VK   ++ L      +V  +LVGNK DL   
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHME 121

Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R VS EEGK LAE  G  F+E+SA ++ NVE AFE++I EI
Sbjct: 122 RQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  119 bits (299), Expect = 5e-34
 Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 3/156 (1%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEF-QTQV-VDIDGKEVKAQIWDTAGQ 73
           K++++G+  VGKS+++ RF +  F  + K TIGV+F + Q+ +    ++V+  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
           E F A+T AYYRGA   ++V+  T R SF++++ W E++   C   +  +LV  K DL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGD-IPMVLVQTKIDLLD 120

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169
              ++ EE ++LA+   L    TS  D  NV   FE
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFE 156

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  118 bits (298), Expect = 6e-34
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 4/159 (2%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KI+L+GDSAVGKS L+ RF  + ++    +T  +         +GK +    WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR 135
           F+ + ++YY  A   ++V+D+TR+ ++ ++ +W EEL  +    +  ++V NK DLD   
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPE-IPCIVVANKIDLDP-- 118

Query: 136 DVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
              T++  + AE+  L     SA D TNV   F+  I+ 
Sbjct: 119 -SVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  118 bits (297), Expect = 1e-33
 Identities = 63/162 (38%), Positives = 95/162 (58%), Gaps = 2/162 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F ++ F ++   TI   + T+  +IDG+  +  I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQE 61

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRM-LVGNKCDLDS 133
            F A+   Y R   G L+V+ +T R SF+ V ++  ++    D     M LVGNK DL+ 
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R VS EEG+ LA +  + ++ETSA D  NV+ AF  ++R I
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  118 bits (297), Expect = 2e-33
 Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 23/175 (13%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KIV++GD AVGK+ LL  +  N+F +    T+  +  +  V +DGK+V   +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKR-WLEELTTHC-DTAVGRMLVGNKCDLDS 133
           +  +    Y      L+ + +   SSF++VK  W  E+  +C +  +  +LVG K DL  
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPI--ILVGTKIDL-- 116

Query: 134 IRD--------------VSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
            RD              ++ EEG+ LA+E G   +ME SAL    ++  F+  IR
Sbjct: 117 -RDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  117 bits (294), Expect = 2e-33
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K++++G   VGKS L  +F  +EF  + + T    ++ +VV  DG+EV+  I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQLNILDTAGQE 59

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y+R   G L+V+ IT   SF ++  + E++    +   V  +LVGNKCDL+ 
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177
            R VS EE  +LAE+ G+ ++ETSA    NV+  F  ++REI  
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  116 bits (294), Expect = 4e-33
 Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 16/171 (9%)

Query: 17  IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF 76
           +V++GD AVGK+ LL  +  N F  +   T+   +   V  +DGK V+  +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVE-VDGKPVELGLWDTAGQEDY 59

Query: 77  RAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL---- 131
             +    Y      L+ + +   +SF++VK +W  E+   C   V  +LVG K DL    
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPN-VPIILVGTKLDLRNDK 118

Query: 132 DSIRD--------VSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
            ++ +        V+ E+G++LA+  G   ++E SAL    V   FE  IR
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIR 169

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  117 bits (295), Expect = 4e-33
 Identities = 64/163 (39%), Positives = 95/163 (58%), Gaps = 4/163 (2%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+V++GD  VGK+ L  +   N F      TI   ++ QVV +DG+    ++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR---MLVGNKCDLD 132
           + A+   + R   G ++VY IT RS+F+ V+R+ E++    D +      M+VGNKCD  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             R+VSTEEG +LA   G  F+E SA  + NVE AF  ++R +
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  116 bits (291), Expect = 2e-32
 Identities = 71/162 (43%), Positives = 95/162 (58%), Gaps = 2/162 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +N F      TI   ++ Q V ID +     I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCV-IDEETCLLDILDTAGQE 64

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L VY IT RSSF+ +  + E++    D   V  +LVGNKCDLDS
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R VST EG+ LA+  G+ F+ETSA    NV+ AF  ++REI
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  115 bits (289), Expect = 2e-32
 Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 3/156 (1%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K++++GD +VGK+ L++RF ++ FD N KATIGV+F+ +  ++ G     Q+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSI 134
           F+ + S YYRGA   ++V+D+T  +S +  ++WLE+     D ++V   LVG K DL S 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 135 RDVSTEEGKS--LAEEEGLFFMETSALDSTNVEAAF 168
              +  E  +  LA E    +   SAL   NV   F
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  113 bits (284), Expect = 7e-32
 Identities = 65/162 (40%), Positives = 93/162 (57%), Gaps = 3/162 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I  R SF+ +  + E++    D+  V  +LVGNKCDL +
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R VST +G+ LA+  G+ ++ETSA     VE AF  ++REI
Sbjct: 121 -RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  114 bits (286), Expect = 8e-32
 Identities = 58/170 (34%), Positives = 92/170 (54%), Gaps = 7/170 (4%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEF-DSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           K+V++G  +VGK++L+ R+  + F     + TIG  F  + + +  + V   IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL--- 131
           R+ A++  YYRGA  A+V YD+T  SSF+  K W++EL  + +      L G K DL   
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL-QNLEEHCKIYLCGTKSDLIEQ 120

Query: 132 -DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
             S+R V   + +  A+E      ETS+    NV+  F+ V  E + + +
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA-EDFVSRA 169

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  112 bits (283), Expect = 2e-31
 Identities = 64/165 (38%), Positives = 86/165 (52%), Gaps = 6/165 (3%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KI ++G S VGKS L  RF    F    +  +   +  QV  IDG++V  +I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVT-IDGEQVSLEIQDTPGQQQ 59

Query: 76  FRAV--TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTH--CDTAVGRMLVGNKCDL 131
                      R A G ++VY IT RSSFD V + L+ +      D  +  +LVGNK DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSA-LDSTNVEAAFEVVIREI 175
              R VSTEEG+ LA E G  F E SA  +   V+  F  + RE+
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREV 164

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  112 bits (281), Expect = 3e-31
 Identities = 55/135 (40%), Positives = 86/135 (63%)

Query: 37  NEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDI 96
           + FD+N ++TIG++F ++ + +D   V+ Q+WDTAGQERFR++  +Y R +  A+VVYDI
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 97  TRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMET 156
           T R SF++  +W++++       V   LVGNK DL  +R V+ EEG   A+E    F ET
Sbjct: 63  TNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHET 122

Query: 157 SALDSTNVEAAFEVV 171
           SA    N++  F+ +
Sbjct: 123 SAKAGHNIKVLFKKI 137

Length = 176

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  109 bits (273), Expect = 4e-30
 Identities = 61/162 (37%), Positives = 96/162 (59%), Gaps = 2/162 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI   ++ QV ++DG++   +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGTE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
           +F A+   Y +   G ++VY IT +S+F+ ++   E++    DT  V  +LVGNKCDL+ 
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V  E+G++LA + G  F+ETSA    NV   F  ++R+I
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  106 bits (266), Expect = 4e-29
 Identities = 64/167 (38%), Positives = 94/167 (56%), Gaps = 3/167 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +KIV++G   VGKS L  +F +N F  +   TI   ++ QV  IDG++   +I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVE-IDGRQCDLEILDTAGTE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDS 133
           +F A+   Y +   G L+VY +T  +S + +    E+ L       V  +LVGNK DL+ 
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 134 IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREIYSNI 179
            R VS E+G SL+++ G   F ETSA   TNV+  F  ++R+I   I
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQIICVI 167

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  106 bits (266), Expect = 4e-29
 Identities = 64/174 (36%), Positives = 89/174 (51%), Gaps = 8/174 (4%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +KIV++G   VGKS +  +F  + F      TI   ++TQ   ID +     I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQA 61

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC----DTAVGRMLVGNKCD 130
            F A+   Y R   G ++ Y +T R SF     + +EL T      D  +  +LVGNK D
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEF-KELITRVRLTEDIPL--VLVGNKVD 118

Query: 131 LDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 184
           L+  R V+TEEG++LA E    F ETSA     ++ AF  ++REI    S   L
Sbjct: 119 LEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKESMPAL 172

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  105 bits (264), Expect = 1e-28
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVE-----FQTQVVDIDGKEVKAQIWD 69
           FK+VL+GD   GK+  + R    EF+    AT+GVE     F T      GK ++  +WD
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNR----GK-IRFNVWD 55

Query: 70  TAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKC 129
           TAGQE+F  +   YY     A++++D+T R ++ +V  W  +L   C+  +  +L GNK 
Sbjct: 56  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKV 114

Query: 130 DLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
           D+   R V  ++      ++ L + E SA  + N E  F  + R++  N +
Sbjct: 115 DI-KDRKVKPKQITFH-RKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPN 163

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  104 bits (261), Expect = 2e-28
 Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 16  KIVLIGDSAVGKSNLLSRFARN--EFDSNSKATIGVEF--QTQVVDIDGKEVKAQIWDTA 71
           +  ++GD AVGKS L+  F  +   F  N   T G +   +T  V      V+  I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT--AVGRMLVGNKC 129
           GQE F  +    +       VVYD+T   SF++  RW+  + TH       G +LVGNKC
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPG-VLVGNKC 120

Query: 130 DLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173
           DL   R+V   + ++LA+   L F ETSA +    EA F  + R
Sbjct: 121 DLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  104 bits (261), Expect = 3e-28
 Identities = 57/162 (35%), Positives = 90/162 (55%), Gaps = 2/162 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F    F      TI  +F  + +++D      +I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT-THCDTAVGRMLVGNKCDLDS 133
           +F ++   Y +   G +VVY +  + +F  +K   +++        V  +LVGNK DL+S
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R+VS+ EG++LAEE G  FMETSA   T V   F  ++R++
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  103 bits (260), Expect = 8e-28
 Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 15/181 (8%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +   KIV++GD   GK+ LL  +A+  F      T+   + T +   +GK ++  +WDTA
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTA 60

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCD 130
           GQE +  +    Y      L+ Y +   +S D+V+ +W  E+   C      +LVG K D
Sbjct: 61  GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCP-GTPIVLVGLKTD 119

Query: 131 LDSIRD------------VSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREIYS 177
           L   ++            V+ E+G+S+A+  G   ++E SA    NV+  F+  I    S
Sbjct: 120 LRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALS 179

Query: 178 N 178
            
Sbjct: 180 K 180

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  100 bits (251), Expect = 6e-27
 Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 3/163 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI   ++ Q+ ++D ++   +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQI-EVDCQQCMLEILDTAGTE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
           +F A+   Y +   G  +VY IT + SF+ ++   E++    DT  V  +LVGNKCDL+ 
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 134 IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREI 175
            R VS EEG++LA + G   F+ETSA    NV+  F  ++R+I
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  101 bits (254), Expect = 9e-27
 Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 13/191 (6%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK-EVKAQIWDTAGQ 73
            KIV++GD A GK++L+ RFA+  F  + K TIG++F ++ + + G   V  Q+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLE---ELTTHCDTAVGRMLVGNKCD 130
           +    +   Y  GA    +VYDIT   SF++++ WL    ++    +T    +LVGNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 131 LDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYK 190
           L+  R V+ E+    A+E  +  +  SA     V   F+ +  E+        L     +
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAEL--------LGVKLSQ 172

Query: 191 AELSV-NRVTL 200
           AEL    RV  
Sbjct: 173 AELEQSQRVVK 183

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 94.4 bits (235), Expect = 2e-24
 Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K VL+GD AVGK++L+  +  N + +    T    F + VV +DGK V+ Q+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNF-SVVVLVDGKPVRLQLCDTAGQDE 60

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           F  +    Y      L+ + +   SSF ++  +W+ E+  H   A   +LVG + DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKA-PIILVGTQADLRTD 119

Query: 132 ---------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVI 172
                       + VS    K+LAE+ G   ++E SAL   N++  F+  I
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 93.6 bits (233), Expect = 6e-24
 Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 14/170 (8%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KI L+GD+ +GK++L+ ++   EFD     T+GV F  + + I G E+   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR 135
           F  +     + AV  L ++D+TR+S+ +S+K W  +      TA+  +LVG K DL    
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDL--FA 118

Query: 136 DVSTEEGKSLAEEE---------GLFFMETSALDSTNVEAAFEVVIREIY 176
           D+  EE + + ++           L F   S   S NV+  F+ V+ +++
Sbjct: 119 DLPPEEQEEITKQARKYAKAMKAPLIF--CSTSHSINVQKIFKFVLAKVF 166

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 93.6 bits (233), Expect = 1e-23
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK++L+GD  VGK+  + R    EF+     T+GVE        +   +   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCD 130
           +F  +   YY     A++++D+T R ++ +V  W  ++   C+  +  +LVGNK D
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCEN-IPIVLVGNKVD 124

Length = 215

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 92.9 bits (231), Expect = 2e-23
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 3/164 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+V++GD   GK+  + R    EF+   + TIGVE        +  +++   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY     A++++D+T R ++ +V  W  +L   C+  +  +L GNK D+ + 
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKN- 131

Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           R V  ++  +   ++ L + E SA  + N E  F  + R++  +
Sbjct: 132 RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174

Length = 219

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 92.5 bits (230), Expect = 3e-23
 Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 5/175 (2%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +++VL+GDS VGKS+L + F    ++ ++    G +   + V +DG+E    ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKR---WLEELTTHCDTAVGRMLVGNKCDL 131
               +  +  +     ++VY +T RSSF+        L       D  +  +LVGNK DL
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPI--ILVGNKSDL 118

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNS 186
              R+VS +EG++ A      F+ETSA    NV+  FE ++R++      K  N+
Sbjct: 119 VRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLRRDSKEKNT 173

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 88.4 bits (219), Expect = 6e-22
 Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+V++GD A GK++LL+ F R  F    + T+  E     + +DG  V+  +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           F  + S  Y      ++ + +    S ++V+ +WL E+  HC   V  +LV  KCDL   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCP-GVKLVLVALKCDLREP 119

Query: 135 RDVSTEEGKSLAEEEGLF---------FMETSALDSTNVEAAF 168
           R+       +++ EEGL          ++E SA  +  V  AF
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAF 162

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 88.0 bits (218), Expect = 1e-21
 Identities = 57/173 (32%), Positives = 87/173 (50%), Gaps = 20/173 (11%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK++LL  F   EF      T+   F+  V D   DGK V+  +WDTAGQ
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV---FENYVTDCRVDGKPVQLALWDTAGQ 59

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDL 131
           E +  +    Y  A   L+ + I    S ++V+ +W+EE+  +C +  V  +LVG K DL
Sbjct: 60  EEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPV--ILVGLKKDL 117

Query: 132 --DSI--------RDVSTEEGKSLAEEEGL-FFMETSALDSTNVEAAFEVVIR 173
             +++          V  ++ K +A   G   +ME SAL    V+  FE   R
Sbjct: 118 RQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATR 170

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 85.3 bits (211), Expect = 6e-21
 Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +++V+ G   VGKS+L+ RF +  F  +   TI   ++ QV+         QI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSH 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLE---ELTTHCDTAVGRMLVGNKCDL 131
           +F A+           ++VY IT + S + +K   E   E+  +    +  MLVGNKCD 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172
              R+VS+ EG +LA      FMETSA  + NV+  F+ ++
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 82.4 bits (203), Expect = 1e-19
 Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 24/189 (12%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N F      T+   +  Q   +DG+ V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEE 63

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  + +  Y      ++ + I   SS+++V+ +W  E+  HC   V  +LVG K DL   
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPN-VPILLVGTKKDLRND 122

Query: 132 -DSIRD--------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNISR 181
            D+++         ++ ++G +LA++   + ++E SAL+   V        +E+++   R
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGV--------KEVFAEAVR 174

Query: 182 KVLNSDAYK 190
            VLN    K
Sbjct: 175 AVLNPTPIK 183

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 81.3 bits (201), Expect = 2e-19
 Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 9/163 (5%)

Query: 18  VLIGDSAVGKSNLLSRFARNEFDSNSKATIG-VEFQTQVVDIDGKEVKAQIWDTAGQERF 76
           V++G   VGKS+LL+     E    S       +    V ++D  +VK  + DT G + F
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 77  -----RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
                  +     RGA   L+V D T R S +  K  +          +   LVGNK DL
Sbjct: 61  GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPII--LVGNKIDL 118

Query: 132 DSIRDVSTEE-GKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173
              R+V      + LA+  G+   E SA     V+  FE +I 
Sbjct: 119 LEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 81.4 bits (201), Expect = 2e-19
 Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 24/178 (13%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE- 74
           K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 61

Query: 75  --RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCD 130
             R R ++  Y +  V  L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K D
Sbjct: 62  YDRLRPLS--YPQTDV-FLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLD 116

Query: 131 L-------DSIRD-----VSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREI 175
           L       + +++     ++  +G ++A+E G   ++E SAL    ++  F+  IR +
Sbjct: 117 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 174

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 82.0 bits (202), Expect = 2e-19
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 3/156 (1%)

Query: 20  IGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV 79
           +GD   GK+  + R    EF+    AT+GVE    V   +   ++  +WDTAGQE+F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 80  TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVST 139
              YY     A++++D+T R ++ +V  W  +L   C+  +  +L GNK D+   R V  
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVKD-RKVKA 118

Query: 140 EEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +   +   ++ L + + SA  + N E  F  + R++
Sbjct: 119 KS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 79.8 bits (197), Expect = 9e-19
 Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 21/172 (12%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KIVL+GDS  GK+ LL  FA++ F  N   T+  E  T   ++D + ++  +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +  V    Y  +   L+ +DI+R  + DSV K+W  E+   C      +LVG K DL + 
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNT-PVLLVGCKSDLRT- 119

Query: 135 RDVST--------------EEGKSLAEEEG-LFFMETSALDSTN-VEAAFEV 170
            D+ST              E+G++LA++ G   ++E SA  S N V   FE+
Sbjct: 120 -DLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEM 170

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 79.8 bits (197), Expect = 1e-18
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 20/174 (11%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL  F++++F      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 59

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
           E +  +    Y      L+ + I    S +++ ++W  E+   C   V  +LVGNK DL 
Sbjct: 60  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 118

Query: 132 ---DSIRD--------VSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
               +IR+        V  EEG+++AE+ G F ++E SA     V   FE+  R
Sbjct: 119 NDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATR 172

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 80.3 bits (198), Expect = 1e-18
 Identities = 64/241 (26%), Positives = 101/241 (41%), Gaps = 60/241 (24%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEF---QTQVVDIDGKEVKAQIWDTAG 72
           K+VL+GD  VGK++LL R+    F  ++ +T+G  F   Q    +I        IWDTAG
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAFYLKQWGPYNI-------SIWDTAG 53

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL 131
           +E+F  + S Y RGA   ++ YD++   S + ++ R+L    T  +  +   +VGNK DL
Sbjct: 54  REQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDL 112

Query: 132 DSI-------------------RDVSTEEGKSLAEE---------------EGLFFMETS 157
                                 R V+ E+ K+  +                E + F ETS
Sbjct: 113 TEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCF-ETS 171

Query: 158 ALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSC 217
           A    NV+  FE +   +   I  +       +AE +  + T+       SK       C
Sbjct: 172 AKTGYNVDELFEYLFNLVLPLILAQ-------RAEANRTQGTVNLPNPKRSKS-----KC 219

Query: 218 C 218
           C
Sbjct: 220 C 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 77.4 bits (191), Expect = 2e-18
 Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+V+IGD   GKS+LLS+    EF        G       +++DG      IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKR---WLEELTTHCDTAVGRMLVGNKC 129
            +     + + A   L+VYD+T R S + V R   WL  L       +  +LVGNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKL-GGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 78.6 bits (194), Expect = 1e-17
 Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 13/167 (7%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +++V++G S VGK+ ++SRF    F+     TI  +F  ++  I G+  +  I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 75  RFRAVTS-AYYRGAVGALVVYDITRRSSFDSVKRWLEEL---------TTHCDTAVGRML 124
            F A+   +   G V  ++V+ +  R SF+ V R  E++          T  +  +  ++
Sbjct: 60  PFPAMRRLSILTGDV-FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVI 118

Query: 125 VGNKCDLDSIRDVSTEEGKSL-AEEEGLFFMETSALDSTNVEAAFEV 170
            GNK D D  R+V  +E + L   +E   + E SA  ++N++  F  
Sbjct: 119 CGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRA 165

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 75.1 bits (185), Expect = 4e-17
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 22/170 (12%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQT-QVVDIDGKEVKAQIWDTAGQE 74
           K++L+G   VGK++L  +    +FD +  +T G+  Q  ++   + K+++  +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 75  RFRAV------TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR----ML 124
            + A       + + Y      L+V+D+        V  WL         A G     +L
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWL-----RQIKAFGGVSPVIL 111

Query: 125 VGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
           VG   D     D+  +                S  +   +    + + +E
Sbjct: 112 VGTHIDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAELKKAIAKE 161

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 75.3 bits (185), Expect = 4e-17
 Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 20/173 (11%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V +GD AVGK+ +L  +  N F ++   T+   F   VV +DG  V   +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQED 61

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +  +    YRGA   L+ + +  ++S+++V K+W+ EL  H    V  +LVG K DL   
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPEL-RHYAPGVPIVLVGTKLDL--- 117

Query: 135 RD-------------VSTEEGKSLAEEEGL-FFMETSALDSTNVEAAFEVVIR 173
           RD             ++T +G+ L ++ G   ++E S+    NV+A F+  I+
Sbjct: 118 RDDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIK 170

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 75.3 bits (185), Expect = 6e-17
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           ++V +G + VGK+ L+ RF  + F+   + T+  E  ++  ++ G +V   I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDSI 134
           F A+     +      +VY +    SF+ VKR  EE L    D  V  ++VGNK D  + 
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 135 RDVSTEEGKSLAEEE-GLFFMETSALDSTNVEAAFEVVIRE 174
           R V   +  S  E +    F+E SA D+ NV   F+ ++++
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQ 160

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 74.3 bits (182), Expect = 1e-16
 Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 16/162 (9%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KIV++GDS  GK+ LL  FA++ F  N   T+  E  T   +ID + ++  +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  V    Y  +   L+ +DI+R  + DSV K+W  E+   C      +LVG K DL   
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRTD 124

Query: 132 ---------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTN 163
                         VS ++G ++A++ G   ++E SAL S N
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 70.7 bits (173), Expect = 2e-15
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 61

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 120

Query: 132 ---------DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E G+ LA +   + ++E SAL    ++  F+  I
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAI 171

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 68.5 bits (167), Expect = 4e-14
 Identities = 65/219 (29%), Positives = 102/219 (46%), Gaps = 31/219 (14%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KIV++GD+  GK+ LL  FA++ +  +   T+  E  T   +ID   ++  +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +  V    Y  +   L+ +DI+R  + DSV K+W  E    C  A   +LVG  C LD  
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNA-KLVLVG--CKLDMR 118

Query: 135 RDVST--------------EEGKSLAEEEG-LFFMETSALDSTN-VEAAFEVV----IRE 174
            D+ST              E+G  LA + G + ++E S+  S N V   F V     +R 
Sbjct: 119 TDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRR 178

Query: 175 IYSNI----SRKVLNSDAYKAELSV--NRVTLVKDGANS 207
            + ++    SR+ L   + +    V  N   + KD A S
Sbjct: 179 EHPSLKRSTSRRGLKRISQQPLRPVTENTPEIRKDRAKS 217

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 66.1 bits (162), Expect = 7e-14
 Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 17/162 (10%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           +I+++G    GK+ +L +    E  +    TIG      V  ++ K VK  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTT-IPTIG----FNVETVEYKNVKFTVWDVGGQDK 55

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTH---CDTAVGRMLVGNKCDLD 132
            R +   YY    G + V D + R   +  K  L +L          +  +++ NK DL 
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPL--LILANKQDL- 112

Query: 133 SIRDVSTEEGKSLAEEEGL-----FFMETSALDSTNVEAAFE 169
               ++  E   L   E +          SA+    ++   +
Sbjct: 113 -PGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLD 153

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 63.9 bits (155), Expect = 7e-13
 Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 16/176 (9%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +A + F      T+   +   V  + GK+    ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV-TVGGKQYLLGLYDTAGQE 59

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
            +  +    Y      L+ + +   +SF +VK  W+ EL       V  +L+G + DL  
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAPNVPYLLIGTQIDLRD 118

Query: 132 DSI----------RDVSTEEGKSLAEEEGL-FFMETSALDSTNVEAAFEVVIREIY 176
           D            + ++ E+G+ LA+E G   ++E SAL    ++  F+  I  I 
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 65.1 bits (158), Expect = 8e-13
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 22/163 (13%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+VL+GD   GK+ +L   A++ +      T+  E  T  ++ + + V+  +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDS-VKRWLEELTTHC-DTAVGRMLVGNKCDLDS 133
           +  V    Y  +   L+ +DI+R   FDS +K+W  E+  +C  T +  +L+G K DL +
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRI--LLIGCKTDLRT 131

Query: 134 IRDVST--------------EEGKSLAEEEGL-FFMETSALDS 161
             D+ST              E+G ++A++ G   ++E SA  S
Sbjct: 132 --DLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTS 172

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 54/164 (32%), Positives = 75/164 (45%), Gaps = 20/164 (12%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           +IVLIGD  VGKS+L+      EF  N      +   T   D+  + V   I DT+ + +
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRV--LPEITIPADVTPERVPTTIVDTSSRPQ 61

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI 134
            RA  +A  R A    +VY + R S+ + ++ +WL  +       V  +LVGNK DL   
Sbjct: 62  DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDL--- 117

Query: 135 RDVSTEEGKSLAEEEGLFFM----------ETSALDSTNVEAAF 168
           RD S++ G    EEE L  M          E SA    NV   F
Sbjct: 118 RDGSSQAG---LEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G    GK+ +L +    E    +  TIG  F  + V    K VK  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIV-TTIPTIG--FNVETVTY--KNVKFTVWDVGGQE 69

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTH---CDTAVGRMLVGNKCDL 131
             R +   Y+      + V D   R   +  K  L  L       D  +  +++ NK DL
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPL--LILANKQDL 127

Query: 132 DSIRDVSTEEGKSLAEEEGL 151
                +S  E + L     L
Sbjct: 128 PG--AMSEAEIRELLGLHEL 145

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 8/125 (6%)

Query: 8   GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQI 67
              +EY  K++++G    GK+ +L +F   E    +  TIG    + V +I  K ++  +
Sbjct: 11  FPRKEY--KVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIG----SNVEEIVYKNIRFLM 63

Query: 68  WDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-G 126
           WD  GQE  R+  + YY      ++V D T R      K  L ++  H D     +LV  
Sbjct: 64  WDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLA 123

Query: 127 NKCDL 131
           NK DL
Sbjct: 124 NKQDL 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 53.3 bits (128), Expect = 6e-09
 Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI---DGKEVKAQIWDTA 71
             IV++G  + GK+ +L R   NEF  N+  T G  F T+ + +   + K V    WD  
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKG--FNTEKIKVSLGNAKGVTFHFWDVG 60

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCD 130
           GQE+ R +  +Y R   G + V D       +  K  L ++T   +   V  +++ NK D
Sbjct: 61  GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQD 120

Query: 131 LDSIRDVSTEEGKSLAEEE 149
           L +   VS  E K LA  E
Sbjct: 121 LPNALPVSEVE-KLLALHE 138

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 53.4 bits (128), Expect = 7e-09
 Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 46/199 (23%)

Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVD---------------I 58
             K V++GD+AVGK+ L+   A N+  +  +           +D               +
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 59  DGKEVKAQIWDTAG----QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKR-WLEELT 113
           DG  V  ++WDT G      RF     AY R  V  L+ + I   +S  +VK  W  E+ 
Sbjct: 62  DGVSVSLRLWDTFGDHDKDRRF-----AYGRSDV-VLLCFSIASPNSLRNVKTMWYPEIR 115

Query: 114 THCDTAVGRMLVGNK-----CDLDSI--------------RDVSTEEGKSLAEEEGLFFM 154
             C   V  +LVG K      DLD +                +  E G+++A+E G+ + 
Sbjct: 116 HFCPR-VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYY 174

Query: 155 ETSALDSTNVEAAFEVVIR 173
           ETS +    V+  F+  IR
Sbjct: 175 ETSVVTQFGVKDVFDNAIR 193

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 33/178 (18%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI-----DGKEVKAQIWDT 70
           K++++GDS VGKS+L+    +N+   N   T+G     +         + K    ++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 71  AGQ----ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRW-LEELTTHC--------- 116
            G     E  ++  + +Y    G + V+D+T + S  ++ RW LE L             
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTN 121

Query: 117 ---------DTAVGRMLVGNKCDL--DSIRDVSTEEGKSLAEEEGLFFMETSALDSTN 163
                       V  +++G K D   ++ R+        L+E+      E   LD TN
Sbjct: 122 GDYDSEQFAGNPVPLLVIGTKLDQIPEAKRNWVLTRTAFLSEDFNA---EEINLDCTN 176

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 18/168 (10%)

Query: 16  KIVLIGDSAVGKSNLLSRFA-----RNEFDSNSKATIGVEFQTQVVDI----DGKEVKAQ 66
           KIV+IG    GK+  +   +       E D++S +  G    T  +D       ++    
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVH 71

Query: 67  IWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVG 126
           ++ T GQERF+ +     RGAVGA+V+ D +R  +F + +  + +  T        ++V 
Sbjct: 72  LFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEE--IIDFLTS--RNPIPVVVA 127

Query: 127 -NKCDLDSIRDVSTEEGKSL--AEEEGLFFMETSALDSTNVEAAFEVV 171
            NK DL        E+ +     E   +  +E  A +        +V+
Sbjct: 128 INKQDLFDAL--PPEKIREALKLELLSVPVIEIDATEGEGARDQLDVL 173

Length = 187

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 22/161 (13%)

Query: 17  IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQ-----IWDTA 71
           I L+G    GK+ L++  A  +F  ++  T+G            ++V        +WD  
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNM---------RKVTKGNVTIKVWDLG 52

Query: 72  GQERFRAVTSAYYRGAVGALV-VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKC 129
           GQ RFR++   Y RG V A+V V D   R   +  K  L +L          +LV GNK 
Sbjct: 53  GQPRFRSMWERYCRG-VNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKN 111

Query: 130 DLD---SIRDVSTEEG-KSLAEEEGLFFMETSALDSTNVEA 166
           DL    S+ ++  +   KS+ + E   +   SA + TN++ 
Sbjct: 112 DLPGALSVDELIEQMNLKSITDREVSCYS-ISAKEKTNIDI 151

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 12/130 (9%)

Query: 16  KIVLIG-DSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +++L+G DSA GKS LL +    E  +    T+G  F  +++ ++   +   +WD  GQE
Sbjct: 1   QVLLLGLDSA-GKSTLLYKLKHAELVTTI-PTVG--FNVEMLQLEKH-LSLTVWDVGGQE 55

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR--MLVGNKCDLD 132
           + R V   Y     G + V D +  +  D  ++ L+      +   G   +L+ NK DL 
Sbjct: 56  KMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKH-ILKNEHIKGVPVVLLANKQDLP 114

Query: 133 ---SIRDVST 139
              +  +++ 
Sbjct: 115 GALTAEEITR 124

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 19/172 (11%)

Query: 17  IVLIGDSAVGKSNLLSRFARNEFDSNSK--------ATIGVEFQTQVVDIDGKEVKAQIW 68
           ++++G    GK+  L +  + +F  N K         T+G+   T    I+  + +   W
Sbjct: 2   VLILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIGT----IEVGKARLMFW 56

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGN 127
           D  GQE  R++   YY  + G + V D T R  F+  K   E++  +     V  +++ N
Sbjct: 57  DLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLAN 116

Query: 128 KCDLD---SIRDVST--EEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
           K DL    S+ ++    ++  +L           SAL+   VE   E ++  
Sbjct: 117 KQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLVDC 168

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 6/117 (5%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           +I+++G  A GK+ +L +    E  + +  TIG   +T    +  K +   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVET----VTYKNISFTVWDVGGQDK 69

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
            R +   YY    G + V D   R   D  +  L  +    +     +LV  NK DL
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 32/163 (19%)

Query: 1   MGKEERGGGGEEYL-------FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQT 53
           M   +R    +E          +++++GDS VGKS+L+    +    +    TIG     
Sbjct: 1   MFWRDRERENKEQNGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGV 60

Query: 54  QVV----------DIDGKEVK---AQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRS 100
           + +           I G   +    ++WD +G ER++   S +Y    G + V+D+++R 
Sbjct: 61  KHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR 120

Query: 101 SFDSVKRWLEELTTH------------CDTAVGRMLVGNKCDL 131
           +  S+++W  E+                   V  +++GNK D+
Sbjct: 121 TKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163

Length = 334

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           ++V +G    GK+ +L +  ++EF      TIG   +T    ++ K +K  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEF-MQPIPTIGFNVET----VEYKNLKFTIWDVGGKHK 55

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDSI 134
            R +   YY      + V D + R         L +L T  +     +L+  NK D+   
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA 115

Query: 135 RDVSTEE 141
             +S EE
Sbjct: 116 --LSVEE 120

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 7/95 (7%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATI-GVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +I+++G  A GK+ +L +    +    S  TI  V F  + V    K VK  +WD  GQ+
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 64

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWL 109
           + R +   YY G  G + V D   R   D  ++ L
Sbjct: 65  KIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQEL 99

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 25/139 (17%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWD----- 69
            ++ ++G   VGK+ ++ +F   EF      T         V + G+     I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 70  ----TAGQE----RFRAV--TSAYYRGAVGALVVYDITRRSSFDSVK---RWLEELTTHC 116
               TAGQE    RFR +  + A+       ++VYDI    SF  VK   + + E     
Sbjct: 61  RYPGTAGQEWMDPRFRGLRNSRAF-------ILVYDICSPDSFHYVKLLRQQILETRPAG 113

Query: 117 DTAVGRMLVGNKCDLDSIR 135
           +     ++VGNK D    R
Sbjct: 114 NKEPPIVVVGNKRDQQRHR 132

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 6/117 (5%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           +I+++G  A GK+ +L +    E    +  TIG   +T    ++ K +K  +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEV-VTTIPTIGFNVET----VEYKNLKFTMWDVGGQDK 73

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
            R +   YY+   G + V D   R      +  LE + +  +     +LV  NK DL
Sbjct: 74  LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           +I+++G  A GK+ +L +    E    +  TIG   +T    ++ K +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDSI 134
            R +   Y++   G + V D   R      +  L  +    +     +LV  NK DL + 
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133

Query: 135 RDVS 138
            + +
Sbjct: 134 MNAA 137

Length = 181

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 13/143 (9%)

Query: 16  KIVLIG-DSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           KIV +G D+A GK+ LL     +    +   T+     ++ + I    VK   +D  G E
Sbjct: 21  KIVFLGLDNA-GKTTLLHMLKDDRLAQHV-PTLH--PTSEELTIGN--VKFTTFDLGGHE 74

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
           + R V   Y+    G + + D      F   K  L+ L    + A   +L+ GNK D   
Sbjct: 75  QARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDK-- 132

Query: 134 IRDVSTEEGKSLAEEEGLFFMET 156
              VS EE   L E  GL+   T
Sbjct: 133 PGAVSEEE---LREALGLYGTTT 152

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 17  IVLIGDSAVGKSNLLSRFARNEFDSNSKATIG---VEFQTQVVDIDGKEVKAQIWDTAGQ 73
           I+++G    GK++LL   +      +   T G   V   TQ   ++  E+        G 
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEI-------GGS 54

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLD 132
           +  R     Y  G+ G + V D          ++ L +L  H  D  +  +++ NK DL 
Sbjct: 55  QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPL--VVLANKQDLP 112

Query: 133 ---SIRDVSTEEGKS-LAEEEGLFFMETSALD---STNVEAAFE 169
              S++++  E     +A         TS  D    + +EA  +
Sbjct: 113 AARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD 156

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           +I+++G  A GK+ +L +    E  + +  TIG   +T    ++ K +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQDK 56

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
            R +   Y++   G + V D   R      +  L+ +    +     +LV  NK DL
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 44/185 (23%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATI----G-----VEFQTQVVDIDGKEVKA 65
            K+V+IG   VGKS+LL+     +     +A +    G     +E   + ++++G  V+ 
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRD-----RAIVTDIAGTTRDVIE---EDINLNGIPVR- 268

Query: 66  QIWDTAGQ-------ERF---RAVTSAYYRGAVGALVVYDITRR-SSFDSVKRWLEELTT 114
            + DTAG        ER    RA  +     A   L V D ++     D        L  
Sbjct: 269 -LVDTAGIRETDDVVERIGIERAKKAI--EEADLVLFVLDASQPLDKED------LALIE 319

Query: 115 HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
                   ++V NK DL     VS  E +S     G   +  SA     ++ A    I++
Sbjct: 320 LLPKKKPIIVVLNKADL-----VSKIELESEKLANGDAIISISAKTGEGLD-ALREAIKQ 373

Query: 175 IYSNI 179
           ++   
Sbjct: 374 LFGKG 378

Length = 454

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 29/168 (17%)

Query: 17  IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQT---QVVDIDGKEVKAQIWDTAG- 72
           +V+ G   VGKS+L+++  R + +          F T    V   D K ++ Q+ DT G 
Sbjct: 3   LVIAGYPNVGKSSLVNKLTRAKPEVAPYP-----FTTKSLFVGHFDYKYLRWQVIDTPGI 57

Query: 73  -----QER----FRAVTS-AYYRGAVGALVVYDITRRSSFDSVK---RWLEELTTHCDTA 119
                +ER     +A+T+ A+ R AV  L   D +    + S++      +E+    +  
Sbjct: 58  LDRPLEERNTIEMQAITALAHLRAAV--LFFIDPSETCGY-SIEEQLSLFKEIKPLFNKP 114

Query: 120 VGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA 167
           V  ++V NK DL +  D+S  E +   E+EG   ++ S L    V+  
Sbjct: 115 V--IVVLNKIDLLTEEDLS--EIEKELEKEGEEVIKISTLTEEGVDEL 158

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 17  IVLIGDSAVGKSNLLSRFAR-NEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           I+++G    GK+ ++++    N    N   T+G  F  +        +    +D +GQ +
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVG--FNVESFKKGN--LSFTAFDMSGQGK 57

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRM---LVGNKCDL 131
           +R +   YY+   G + V D + R      K  LE L  H D    R+      NK DL
Sbjct: 58  YRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDL 116

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 6/117 (5%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           +I+L+G    GK+ +L + A +E  S+   T G  F  + V  DG   K  +WD  GQ +
Sbjct: 17  RILLLGLDNAGKTTILKQLA-SEDISHITPTQG--FNIKNVQADGF--KLNVWDIGGQRK 71

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
            R     Y+      + V D   R  F+   + L EL      A   +LV  NK DL
Sbjct: 72  IRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDL 128

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.98
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.98
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.98
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.98
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.98
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.98
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.98
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.98
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.98
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.97
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.97
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.97
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.97
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.97
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.97
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.97
PLN03108	210	Rab family protein; Provisional	99.97
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.97
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.97
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.97
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.97
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.97
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.97
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.97
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.97
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.97
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.97
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.97
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.97
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.97
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.97
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.97
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.97
PTZ00369	189	Ras-like protein; Provisional	99.97
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.97
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.97
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.97
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.97
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.97
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.97
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.97
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.97
PLN03118	211	Rab family protein; Provisional	99.97
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.97
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.97
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.97
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.97
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.96
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.96
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.96
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.96
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.96
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.96
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.96
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.96
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.96
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.96
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.96
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.96
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.96
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.96
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.96
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.96
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.96
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.96
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.96
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.96
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.96
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.96
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.95
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.95
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.95
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.95
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.95
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.95
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.94
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.94
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.94
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.94
KOG0395	196	consensus Ras-related GTPase [General function pre	99.94
PLN00223	181	ADP-ribosylation factor; Provisional	99.94
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.94
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.94
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.94
PTZ00133	182	ADP-ribosylation factor; Provisional	99.94
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.94
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.94
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.94
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.93
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.93
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.93
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.93
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.92
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.92
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.92
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.92
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.92
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.92
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.92
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.91
PLN00023	334	GTP-binding protein; Provisional	99.91
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.91
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.91
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.91
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.91
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.9
PTZ00099	176	rab6; Provisional	99.9
COG1100	219	GTPase SAR1 and related small G proteins [General	99.9
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.89
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.89
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.89
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.89
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.89
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.89
PRK12299	335	obgE GTPase CgtA; Reviewed	99.89
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.89
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.88
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.88
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.88
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.88
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.87
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.86
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.86
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.86
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.86
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.85
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.85
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.85
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.85
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.85
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.85
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.85
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.85
PRK04213	201	GTP-binding protein; Provisional	99.85
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.85
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.85
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.84
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.84
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.84
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.84
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.84
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.83
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.83
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.83
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.83
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.83
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.82
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.82
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.82
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.82
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.82
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.82
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.82
PRK15494	339	era GTPase Era; Provisional	99.82
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.82
PRK12297	424	obgE GTPase CgtA; Reviewed	99.82
PRK03003	472	GTP-binding protein Der; Reviewed	99.82
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.81
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.81
COG1123	539	ATPase components of various ABC-type transport sy	99.81
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.81
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.81
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.81
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.81
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.81
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.81
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.81
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.81
cd00881	189	GTP_translation_factor GTP translation factor fami	99.81
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.8
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.8
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.8
PRK12296	500	obgE GTPase CgtA; Reviewed	99.8
PRK11058	426	GTPase HflX; Provisional	99.8
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.8
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.8
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.8
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.8
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.8
KOG1673	205	consensus Ras GTPases [General function prediction	99.8
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.8
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.8
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.8
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.8
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.79
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.79
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.79
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.79
PRK03003	472	GTP-binding protein Der; Reviewed	99.79
PRK12298	390	obgE GTPase CgtA; Reviewed	99.79
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.79
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.79
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.79
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.79
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.79
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.79
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.78
COG4559	259	ABC-type hemin transport system, ATPase component	99.78
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.78
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.78
PRK00089	292	era GTPase Era; Reviewed	99.78
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.78
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.78
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.78
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.78
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.78
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.78
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.78
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.77
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.77
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.77
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.77
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.77
COG1159	298	Era GTPase [General function prediction only]	99.77
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.77
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.77
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.77
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.77
COG2229	187	Predicted GTPase [General function prediction only	99.77
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.77
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.77
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.77
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.77
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.77
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.77
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.77
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.77
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.77
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.77
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.76
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.76
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.76
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.76
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.76
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.76
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.76
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.76
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.76
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.76
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.76
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.76
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.76
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.76
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.76
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.76
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.76
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.76
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.76
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.76
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.76
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.75
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.75
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.75
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.75
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.75
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.75
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.75
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.75
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.75
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.75
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.75
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.75
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.75
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.75
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.75
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.75
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.75
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.75
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.75
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.75
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.74
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.74
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.74
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.74
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.74
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.74
PRK00093	435	GTP-binding protein Der; Reviewed	99.74
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.74
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.74
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.74
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.74
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.74
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.74
CHL00189	742	infB translation initiation factor 2; Provisional	99.74
COG4172	534	ABC-type uncharacterized transport system, duplica	99.74
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.74
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.73
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.73
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.73
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.73
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.73
PRK10908	222	cell division protein FtsE; Provisional	99.73
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.73
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.73
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.73
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.73
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.73
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.73
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.73
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.73
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.73
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.73
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.73
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.73
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.73
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.73
COG1123	539	ATPase components of various ABC-type transport sy	99.73
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.73
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.72
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.72
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.72
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.72
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.72
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.72
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.72
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.72
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.72
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.72
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.72
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.72
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.72
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.72
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.72
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.72
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.72
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.72
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.72
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.72
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.72
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.72
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.71
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.71
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.71
PRK05306	787	infB translation initiation factor IF-2; Validated	99.71
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.71
PRK10938	490	putative molybdenum transport ATP-binding protein	99.71
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.71
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.71
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.71
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.71
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.71
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.71
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.7
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.7
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.7
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.7
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.7
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.7
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.7
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.7
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.7
PRK05433	600	GTP-binding protein LepA; Provisional	99.7
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.7
PRK00093	435	GTP-binding protein Der; Reviewed	99.7
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.7
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.7
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.7
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.7
COG4988	559	CydD ABC-type transport system involved in cytochr	99.7
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.69
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.69
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.69
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.69
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.69
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.69
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.69
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.69
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.69
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.69
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.69
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.69
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.69
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.69
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.69
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.68
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.68
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.68
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.68
COG0486	454	ThdF Predicted GTPase [General function prediction	99.68
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.68
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.68
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.68
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.68
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.68
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.68
cd03246	173	ABCC_Protease_Secretion This family represents the	99.68
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.68
COG1160	444	Predicted GTPases [General function prediction onl	99.68
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.68
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.68
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.68
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.67
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.67
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.67
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.67
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.67
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.67
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.67
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.67
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.67
COG4987	573	CydC ABC-type transport system involved in cytochr	99.67
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.67
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.67
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.67
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.67
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.67
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.67
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.67
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.66
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.66
PLN03211	659	ABC transporter G-25; Provisional	99.66
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.66
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.66
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.66
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.66
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.66
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.66
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.66
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.66
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.65
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.65
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.65
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.65
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.65
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.65
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.65
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.65
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.65
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.65
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.64
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.64
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.64
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.64
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.64
PRK10218	607	GTP-binding protein; Provisional	99.64
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.64
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.64
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.63
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.63
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.63
COG4181	228	Predicted ABC-type transport system involved in ly	99.63
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.63
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.63
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.63
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.63
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.62
PLN03232	1495	ABC transporter C family member; Provisional	99.62
PRK12317	425	elongation factor 1-alpha; Reviewed	99.62
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.62
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.62
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.62
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.62
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.62
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.61
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.61
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.61

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-37  Score=225.83  Aligned_cols=179  Identities=52%  Similarity=0.830  Sum_probs=169.1

Q ss_pred             CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703            7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (220)
Q Consensus         7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   86 (220)
                      ++...++.+||.++|.+|||||+|+.++.++.|+..+..|+++++...++.++++.+.+++|||.|+++|+.....||+.
T Consensus         2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~   81 (205)
T KOG0084|consen    2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG   81 (205)
T ss_pred             CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCe-EEEeccCCCCCHH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVE  165 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~  165 (220)
                      ++++|+|||+++..||+.+..|+.++.++...+.|.++||||+|+...+.++.+++..++...+++ +++|||+++.|++
T Consensus        82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe  161 (205)
T KOG0084|consen   82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE  161 (205)
T ss_pred             CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence            999999999999999999999999999998888999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcC
Q 027703          166 AAFEVVIREIYSNISRKVLN  185 (220)
Q Consensus       166 ~l~~~l~~~~~~~~~~~~~~  185 (220)
                      +.|..+...+..........
T Consensus       162 ~~F~~la~~lk~~~~~~~~~  181 (205)
T KOG0084|consen  162 DAFLTLAKELKQRKGLHVKW  181 (205)
T ss_pred             HHHHHHHHHHHHhcccCCCC
Confidence            99999999888765543333

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-34  Score=206.97  Aligned_cols=194  Identities=48%  Similarity=0.744  Sum_probs=171.9

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      ..+.+|+.++|..|||||+|+.+++...|.+.++.|++++.-...++++++.+++++|||.|++.+.+....|++.+.+.
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      ++|||++.+++|..+..|+.++.....+++.++++|||+||...|+++.+|++++++++++++++|||+++.|+++.|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHH--HhhhhhcCcchhhhccccceeeeeecC
Q 027703          171 VIREIYS--NISRKVLNSDAYKAELSVNRVTLVKDG  204 (220)
Q Consensus       171 l~~~~~~--~~~~~~~~h~~~~~~~~a~~~~~~~~G  204 (220)
                      ....+..  +-.+...++........++.+-.....
T Consensus       163 ta~~Iy~~~q~g~~~~~~~~k~k~k~~p~~~~~~~~  198 (216)
T KOG0098|consen  163 TAKEIYRKIQDGVFDDINESKGKIKIGPQIRRIRVS  198 (216)
T ss_pred             HHHHHHHHHHhcccccccccccceeecccccccccC
Confidence            8887765  333444554444423345444443333

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-34  Score=211.05  Aligned_cols=168  Identities=50%  Similarity=0.914  Sum_probs=163.8

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      ..+..+||.++|.+|||||+++.++....|...+..|+++++...++..++..+.+++|||.|+.++......|++.|.+
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      +++|||++++.+|+.+..|+..+.....+..|.++||||+|+...|+++.+.+.+++.+.++.|++|||+++.|+.+.|-
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            99999999999999999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027703          170 VVIREIYS  177 (220)
Q Consensus       170 ~l~~~~~~  177 (220)
                      .|.+.+.+
T Consensus       168 ~La~~i~~  175 (207)
T KOG0078|consen  168 SLARDILQ  175 (207)
T ss_pred             HHHHHHHh
Confidence            99998886

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.1e-34  Score=208.80  Aligned_cols=177  Identities=68%  Similarity=1.062  Sum_probs=167.9

Q ss_pred             CCCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHh
Q 027703            4 EERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAY   83 (220)
Q Consensus         4 ~~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~   83 (220)
                      ....+++-++.+||+++|.+|+|||-|+.++..++|......|+++++.+..+.++++.+..++|||.|+++++.....|
T Consensus         4 ~~~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaY   83 (222)
T KOG0087|consen    4 RRDKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAY   83 (222)
T ss_pred             ccCCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchh
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN  163 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (220)
                      ++.+.+.++|||++...+|+.+.+|+.+++...+.+++++++|||+||.+.|.+..+++..++...++.+++|||++..|
T Consensus        84 YrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tN  163 (222)
T KOG0087|consen   84 YRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATN  163 (222)
T ss_pred             hcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEeccccccc
Confidence            99999999999999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 027703          164 VEAAFEVVIREIYSNIS  180 (220)
Q Consensus       164 v~~l~~~l~~~~~~~~~  180 (220)
                      ++..|+.++..+.....
T Consensus       164 Ve~aF~~~l~~I~~~vs  180 (222)
T KOG0087|consen  164 VEKAFERVLTEIYKIVS  180 (222)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999988888866443

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-34  Score=206.56  Aligned_cols=167  Identities=44%  Similarity=0.750  Sum_probs=158.9

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      ....+|++++|+.|||||||+-++..+.|.....+|++-.+....+..++..+.+.+|||.|+++++++...|+++|++.
T Consensus         2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA   81 (200)
T KOG0092|consen    2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA   81 (200)
T ss_pred             CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      |+|||+++.+||..++.|+.++....++++-+.++|||.||...|.+..+++.+++.+.+++|++|||+++.|++++|..
T Consensus        82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~  161 (200)
T KOG0092|consen   82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA  161 (200)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence            99999999999999999999999888777777789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027703          171 VIREIYS  177 (220)
Q Consensus       171 l~~~~~~  177 (220)
                      |.+.+..
T Consensus       162 Ia~~lp~  168 (200)
T KOG0092|consen  162 IAEKLPC  168 (200)
T ss_pred             HHHhccC
Confidence            9988864

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.5e-33  Score=201.81  Aligned_cols=199  Identities=34%  Similarity=0.611  Sum_probs=171.1

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      .+...+||.++|.+|+|||||++++.+..|..++..|++.++.++.+.+++..+.+++|||.|+++|.++-..+++++|.
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCC----CCCcEEEEEecCCCCC--CCCCCHHHHHHHHHHh-CCeEEEeccCCCC
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCD----TAVGRMLVGNKCDLDS--IRDVSTEEGKSLAEEE-GLFFMETSALDST  162 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~v~~k~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~  162 (220)
                      .+++||++++.+|+.+..|..++.....    +.-|++++|||.|+..  .+.++.+.|.+..... +++|+++||++..
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            9999999999999999999999765443    5579999999999864  3888999998888874 6899999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccccccC
Q 027703          163 NVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCAK  220 (220)
Q Consensus       163 ~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~~~~~  220 (220)
                      |+.+.|+.+.+....+-..     +..+...+.|.+..-...       ....+||+|
T Consensus       165 NV~~AFe~ia~~aL~~E~~-----~~~~~~~~~d~i~~~~~~-------~~~~~~c~c  210 (210)
T KOG0394|consen  165 NVDEAFEEIARRALANEDR-----EIAELADYSDQIVLSTKA-------NNQSSGCEC  210 (210)
T ss_pred             cHHHHHHHHHHHHHhccch-----hhhhhhhcCccccccccc-------ccCCCCCCC
Confidence            9999999999888763322     445556677777554432       233449998

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-33  Score=200.57  Aligned_cols=165  Identities=40%  Similarity=0.699  Sum_probs=156.3

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      .-+|++++|+.+||||||++++..+.|...|.+|+|+++...++.+.+..+++++|||.||++|+.+...|++++.+++.
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            34999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCCC-CCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      |||+++..+|+....|+..+...... ..-+++||||.||...++++.+++...+++.+..|+++||+.|.|++++|..|
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI  180 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI  180 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence            99999999999999999998877664 46677899999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 027703          172 IREIYS  177 (220)
Q Consensus       172 ~~~~~~  177 (220)
                      ...+..
T Consensus       181 aa~l~~  186 (221)
T KOG0094|consen  181 AAALPG  186 (221)
T ss_pred             HHhccC
Confidence            877765

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=2.2e-32  Score=205.66  Aligned_cols=166  Identities=39%  Similarity=0.713  Sum_probs=152.2

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      .+..+||+++|..|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999999888888888777777788888899999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      ++|||++++.+|+.+..|+.++.... ...|++++|||.|+...+.+..++++.+++..++.|+++||+++.|++++|++
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999987654 46899999999999887888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027703          171 VIREIYS  177 (220)
Q Consensus       171 l~~~~~~  177 (220)
                      +.+.+..
T Consensus       162 l~~~i~~  168 (189)
T cd04121         162 LARIVLM  168 (189)
T ss_pred             HHHHHHH
Confidence            9987754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.2e-33  Score=195.18  Aligned_cols=169  Identities=47%  Similarity=0.783  Sum_probs=159.2

Q ss_pred             CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703            9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (220)
Q Consensus         9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~   88 (220)
                      .....++||.++|++|+|||||+-++....|.+..+.|++.++....+.++++.+++-+|||.|+++|+.....|++.|.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703           89 GALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      ++|+|||++.+.+|..+..|+.++..+.. ++.-.++||||.|-...|.++.+++..+++++++.|+++||++.++++..
T Consensus        86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence            99999999999999999999999987764 45666789999998888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          168 FEVVIREIYS  177 (220)
Q Consensus       168 ~~~l~~~~~~  177 (220)
                      |+.+...+.+
T Consensus       166 FeelveKIi~  175 (209)
T KOG0080|consen  166 FEELVEKIIE  175 (209)
T ss_pred             HHHHHHHHhc
Confidence            9999887764

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=2.1e-32  Score=207.63  Aligned_cols=164  Identities=38%  Similarity=0.765  Sum_probs=149.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      ++|+++|.+|||||||++++....|...+.+|++.......+.+++..+.+.+||++|+..+...+..++++++++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36899999999999999999999999999999988877778888888999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-GLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      |++++.+|+.+..|+..+........|++++|||+|+...+.+..+++..++.+. ++.|++|||+++.|+.++|+++.+
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999998887665667999999999999877888888888888774 789999999999999999999998


Q ss_pred             HHHHH
Q 027703          174 EIYSN  178 (220)
Q Consensus       174 ~~~~~  178 (220)
                      .+...
T Consensus       161 ~~~~~  165 (202)
T cd04120         161 DILKK  165 (202)
T ss_pred             HHHHh
Confidence            77654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-32  Score=187.14  Aligned_cols=176  Identities=43%  Similarity=0.765  Sum_probs=164.5

Q ss_pred             CCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhh
Q 027703            5 ERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYY   84 (220)
Q Consensus         5 ~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~   84 (220)
                      ..+++.-++-+|+.|+|.+.+|||||+.+.++..|...+..|++++...+++.-..+.+.+++|||.|+++++.....++
T Consensus        12 ~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayy   91 (193)
T KOG0093|consen   12 DSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYY   91 (193)
T ss_pred             ccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHh
Confidence            44566667789999999999999999999999999999999999999988887778889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703           85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV  164 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (220)
                      ++++++|++||.++.++|..+..|.-.+..+.-.++|++++|||+|+..+|.++-+.++.++.+++..||++||+.+.|+
T Consensus        92 RgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinV  171 (193)
T KOG0093|consen   92 RGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINV  171 (193)
T ss_pred             hccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccH
Confidence            99999999999999999999999999998888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027703          165 EAAFEVVIREIYSNIS  180 (220)
Q Consensus       165 ~~l~~~l~~~~~~~~~  180 (220)
                      +++|+.+...+.+.+.
T Consensus       172 k~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  172 KQVFERLVDIICDKMS  187 (193)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999988876543

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=3e-31  Score=196.29  Aligned_cols=165  Identities=52%  Similarity=0.941  Sum_probs=150.4

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ++++||+++|++|||||||++++.+..|...+.+|.+.+.....+.+++..+.+.+||++|+..+...+..+++.+|+++
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            46799999999999999999999999999999999888777777888888899999999999988888888999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|||++++.+|..+..|+..+........|++++|||.|+...+....+++..++...+++++++|++++.|+.++|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999998877655678999999999998777788888999999999999999999999999999999


Q ss_pred             HHHHH
Q 027703          172 IREIY  176 (220)
Q Consensus       172 ~~~~~  176 (220)
                      .+.+.
T Consensus       161 ~~~~~  165 (167)
T cd01867         161 AKDIK  165 (167)
T ss_pred             HHHHH
Confidence            98765

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.8e-31  Score=196.20  Aligned_cols=163  Identities=50%  Similarity=0.875  Sum_probs=148.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..|...+.+|.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999999999999999998888888777667777888889999999999999988889999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      ||++++.+|+.+..|+..+........|++++|||+|+...+.+..+++..++...+++++++||+++.|+.++|+++.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998876665566899999999999887888889999999999999999999999999999999987


Q ss_pred             HHH
Q 027703          174 EIY  176 (220)
Q Consensus       174 ~~~  176 (220)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd04122         162 KIY  164 (166)
T ss_pred             HHh
Confidence            664

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=3.3e-31  Score=194.95  Aligned_cols=160  Identities=43%  Similarity=0.796  Sum_probs=146.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..|.+.+.+|.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999999888899887777777888888899999999999988888888999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      |++++.+|+.+..|+..+........|++++|||.|+...+.+..+++..+++..+.+|+++||+++.|++++|++|.+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999998876655678999999999998878888899999999999999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.2e-30  Score=192.84  Aligned_cols=164  Identities=53%  Similarity=0.905  Sum_probs=148.9

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      +++||+++|++|||||||++++.+..+...+.+|.+.+.....+.+.+..+.+.+||++|+..+...+..+++.++++++
T Consensus         1 ~~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~   80 (166)
T cd01869           1 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   80 (166)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence            36899999999999999999999999988888888877777788888888999999999999888888899999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      |||++++.+|..+..|+..+........|+++++||.|+...+.+..+++..++...+++++++|++++.|+.++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  160 (166)
T cd01869          81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA  160 (166)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence            99999999999999999988776555689999999999987777888889999999999999999999999999999998


Q ss_pred             HHHH
Q 027703          173 REIY  176 (220)
Q Consensus       173 ~~~~  176 (220)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T cd01869         161 REIK  164 (166)
T ss_pred             HHHH
Confidence            8764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.8e-30  Score=199.68  Aligned_cols=174  Identities=63%  Similarity=1.012  Sum_probs=158.5

Q ss_pred             CCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhh
Q 027703            5 ERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYY   84 (220)
Q Consensus         5 ~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~   84 (220)
                      .++.+++++.+||+++|++|||||||++++.+..+...+.+|++.+.....+.+++..+.+.+||++|+.++...+..++
T Consensus         3 ~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~   82 (216)
T PLN03110          3 HRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYY   82 (216)
T ss_pred             CCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHh
Confidence            35566677899999999999999999999999999888889998888888888888889999999999999988899999


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703           85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV  164 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (220)
                      +.++++++|||++++.+|+.+..|+..+......+.|+++++||+|+...+.+..+++..+....+++++++||+++.|+
T Consensus        83 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v  162 (216)
T PLN03110         83 RGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNV  162 (216)
T ss_pred             CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999999999999887766667999999999999877888888999999888999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027703          165 EAAFEVVIREIYSN  178 (220)
Q Consensus       165 ~~l~~~l~~~~~~~  178 (220)
                      .++|+++.+.+.+.
T Consensus       163 ~~lf~~l~~~i~~~  176 (216)
T PLN03110        163 EKAFQTILLEIYHI  176 (216)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888763

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.6e-32  Score=186.12  Aligned_cols=167  Identities=51%  Similarity=0.859  Sum_probs=158.2

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      +-.+|.+|+|.+|+|||+|+-++....|..+|..|++.+....++.++|..+.+++||+.|++.|+.+...+++..++++
T Consensus         6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~   85 (198)
T KOG0079|consen    6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI   85 (198)
T ss_pred             HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|||+++.+||....+|++++...++ ..|-++||||.|.+..+.+..++|++++...++.+|+||++...|++..|.-|
T Consensus        86 vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ci  164 (198)
T KOG0079|consen   86 VVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCI  164 (198)
T ss_pred             EEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHH
Confidence            99999999999999999999988776 58889999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 027703          172 IREIYSNI  179 (220)
Q Consensus       172 ~~~~~~~~  179 (220)
                      .++..+.+
T Consensus       165 t~qvl~~k  172 (198)
T KOG0079|consen  165 TKQVLQAK  172 (198)
T ss_pred             HHHHHHHH
Confidence            98887644

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.8e-30  Score=191.69  Aligned_cols=162  Identities=44%  Similarity=0.785  Sum_probs=145.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..+...+.+|.+.+.....+..++..+.+.+||++|+.++...+..+++.++++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888888887666666767778899999999999988888999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      |+++..+++.+..|+..+........|+++++||+|+...+....+++..+....+++++++||+++.|+.++|+++.+.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999877665678999999999998777777888888888888999999999999999999999876


Q ss_pred             HH
Q 027703          175 IY  176 (220)
Q Consensus       175 ~~  176 (220)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            54

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1.2e-30  Score=195.37  Aligned_cols=162  Identities=34%  Similarity=0.582  Sum_probs=144.1

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      +...+||+++|.+|||||||++++....|+..+.||.+... ...+.+++..+.+.+|||+|++.+...+..+++.++++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            45678999999999999999999999999999999987544 45677888899999999999999988888999999999


Q ss_pred             EEEEeCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEe
Q 027703           91 LVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEGL-FFMET  156 (220)
Q Consensus        91 i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~  156 (220)
                      ++|||++++.+|+.+ ..|+..+.... +..|++++|||.|+..            .+.++.+++..+++..++ .|++|
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            999999999999997 78988887655 4689999999999863            346889999999999996 89999


Q ss_pred             ccCCCCC-HHHHHHHHHHH
Q 027703          157 SALDSTN-VEAAFEVVIRE  174 (220)
Q Consensus       157 Sa~~~~~-v~~l~~~l~~~  174 (220)
                      ||+++.| +.++|+.+.+.
T Consensus       160 SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         160 SALQSENSVRDIFHVATLA  178 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHH
Confidence            9999998 99999998874

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3e-31  Score=183.84  Aligned_cols=205  Identities=38%  Similarity=0.678  Sum_probs=173.9

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      .....+||+++|..|+|||+|+++++.+.||+....|+++++-.+++.+++.++++++|||.|+++|++..+.|++.+++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      ++++||++..++|+-+.+|+.++..+.+...--++||||.|+...++++...++.+....+..|+++||++-.|++.+|.
T Consensus        83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence            99999999999999999999999998876666688999999999889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCC---Cccccccc
Q 027703          170 VVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS---MMDFSCCA  219 (220)
Q Consensus       170 ~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~---~~~~~~~~  219 (220)
                      .+.-.+......--..|+.....  .++-   ..|+-+.-++   ....+||.
T Consensus       163 ~~a~rli~~ar~~d~v~~~~a~a--~~~~---seg~si~l~s~aqt~~~~cc~  210 (213)
T KOG0095|consen  163 DLACRLISEARQNDLVNNVSAPA--PNSS---SEGKSIKLISYAQTQLLTCCN  210 (213)
T ss_pred             HHHHHHHHHHHhccchhhccccC--cccc---CCCCcccchhHHHHHHhcccc
Confidence            88776655333322244443322  2322   4565554444   34477884

>cd01866 Rab2 Rab2 subfamily

Probab=99.98  E-value=2.7e-30  Score=191.37  Aligned_cols=166  Identities=55%  Similarity=0.944  Sum_probs=150.7

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ++++||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|..++......+++.+++++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999999999988888888887788888888889999999999988888888999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|||++++.+++.+..|+..+........|+++++||.|+...+....+++..++...++.++++|++++.|+.++|+++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999998877655678999999999998667788888989998889999999999999999999999


Q ss_pred             HHHHHH
Q 027703          172 IREIYS  177 (220)
Q Consensus       172 ~~~~~~  177 (220)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            887653

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.98  E-value=2.9e-30  Score=199.20  Aligned_cols=171  Identities=26%  Similarity=0.459  Sum_probs=149.4

Q ss_pred             CCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhh
Q 027703            5 ERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYY   84 (220)
Q Consensus         5 ~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~   84 (220)
                      +|.++.....+||+++|++|||||||++++....|+..+.+|++... ...+.+++..+.+.+|||+|++.+......++
T Consensus         4 ~~~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~   82 (232)
T cd04174           4 RRIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCY   82 (232)
T ss_pred             cccCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHc
Confidence            34455556789999999999999999999999999999999987554 34677888999999999999999988888999


Q ss_pred             cCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhCC
Q 027703           85 RGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEGL  151 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~~  151 (220)
                      ++++++++|||++++.+|+.+ ..|+.++.... +..|+++||||.|+..            .+.+..+++..+++..++
T Consensus        83 ~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~  161 (232)
T cd04174          83 SDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGA  161 (232)
T ss_pred             CCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCC
Confidence            999999999999999999984 78988887654 3589999999999864            367889999999999998


Q ss_pred             -eEEEeccCCCC-CHHHHHHHHHHHHHH
Q 027703          152 -FFMETSALDST-NVEAAFEVVIREIYS  177 (220)
Q Consensus       152 -~~~~~Sa~~~~-~v~~l~~~l~~~~~~  177 (220)
                       .|++|||+++. |++++|+.+.....+
T Consensus       162 ~~~~EtSAktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         162 EVYLECSAFTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             CEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence             69999999997 899999999887754

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01868 Rab11_like Rab11-like

Probab=99.98  E-value=2.4e-30  Score=190.96  Aligned_cols=163  Identities=68%  Similarity=1.076  Sum_probs=148.0

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..+||+++|++|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||++|+..+...+..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            46899999999999999999999999998888999888888888888888899999999999888888889999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      |||++++.++..+..|+..+........|+++++||.|+...+....++...+....++.++++||+++.|++++++++.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999988776655689999999999987777888888888888889999999999999999999988


Q ss_pred             HHH
Q 027703          173 REI  175 (220)
Q Consensus       173 ~~~  175 (220)
                      +.+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            653

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.98  E-value=3e-30  Score=189.75  Aligned_cols=161  Identities=42%  Similarity=0.735  Sum_probs=151.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      ||+++|++|||||||++++.+..|+..+.+|.+.+.....+.+++..+.+.+||++|+..+......++++++++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999888888899999999999999999999888888889999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                      .+++.+|+.+..|+..+........|++++|||.|+...+.+..+++..++.+.+.+|+++|++++.++.++|..+.+.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999998888776789999999999988889999999999999999999999999999999999999876


Q ss_pred             H
Q 027703          176 Y  176 (220)
Q Consensus       176 ~  176 (220)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            4

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.98  E-value=2.6e-30  Score=192.20  Aligned_cols=163  Identities=36%  Similarity=0.529  Sum_probs=145.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|.+|||||||++++.+..|+..+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            37999999999999999999999999988888876433 34567788889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      ||++++.+|+.+..|+..+.... ....|++++|||+|+...+.++.+++..++++.+++|+++||+++.|++++|+++.
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999998887776543 35689999999999987778888899999999999999999999999999999999


Q ss_pred             HHHHH
Q 027703          173 REIYS  177 (220)
Q Consensus       173 ~~~~~  177 (220)
                      +.+.+
T Consensus       161 ~~~~~  165 (172)
T cd04141         161 REIRR  165 (172)
T ss_pred             HHHHH
Confidence            87764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04133 Rop_like Rop subfamily

Probab=99.98  E-value=2.2e-30  Score=192.74  Aligned_cols=159  Identities=33%  Similarity=0.588  Sum_probs=141.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +|++++|.+|+|||||+.++....|...+.+|++... ...+.+++..+.+.+|||+|++.+...+..++++++++++||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6999999999999999999999999999999987554 455777888999999999999999988999999999999999


Q ss_pred             eCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCCC----------CCCCHHHHHHHHHHhCC-eEEEeccCCCC
Q 027703           95 DITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI----------RDVSTEEGKSLAEEEGL-FFMETSALDST  162 (220)
Q Consensus        95 d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (220)
                      |++++.+|+.+ ..|+..+.... ...|++++|||.|+...          +.+..+++..+++..+. .|++|||+++.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 67998887654 46899999999999643          24788899999999888 59999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIREI  175 (220)
Q Consensus       163 ~v~~l~~~l~~~~  175 (220)
                      |++++|+.+.+.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999765

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=5.8e-31  Score=183.05  Aligned_cols=171  Identities=50%  Similarity=0.808  Sum_probs=160.4

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      .+..++.+|+.++|+.|+|||+|++++....|.++...|+++++-...+...++.+++++|||.|+++|++....|++.+
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA   82 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   82 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      .+.++|||++++.+|+.+..|+........+++-++++|||.||...|++...++..++++..+.++++|+++|+|+++.
T Consensus        83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa  162 (214)
T KOG0086|consen   83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA  162 (214)
T ss_pred             cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence            99999999999999999999999998888888888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          168 FEVVIREIYSN  178 (220)
Q Consensus       168 ~~~l~~~~~~~  178 (220)
                      |-...+.+...
T Consensus       163 Fl~c~~tIl~k  173 (214)
T KOG0086|consen  163 FLKCARTILNK  173 (214)
T ss_pred             HHHHHHHHHHH
Confidence            88777666543

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.98  E-value=4.1e-30  Score=195.73  Aligned_cols=164  Identities=39%  Similarity=0.745  Sum_probs=146.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      +||+++|++|||||||++++.+..+...+.+|++.+.....+.++ +..+.+.+||++|+..+...+..++++++++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999999999998877766777777 7789999999999999988899999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC----CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC-CeEEEeccCCCCCHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC----DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAF  168 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~  168 (220)
                      ||++++.+|+.+..|+..+....    ....|++++|||+|+...+....+++.++++..+ ..++++||+++.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999988875432    2568999999999997667788889999999988 689999999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          169 EVVIREIYSN  178 (220)
Q Consensus       169 ~~l~~~~~~~  178 (220)
                      ++|.+.+.+.
T Consensus       161 ~~l~~~l~~~  170 (201)
T cd04107         161 RFLVKNILAN  170 (201)
T ss_pred             HHHHHHHHHh
Confidence            9999988764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=99.97  E-value=9.6e-30  Score=193.39  Aligned_cols=166  Identities=49%  Similarity=0.807  Sum_probs=149.0

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      .+..+||+++|++|||||||++++.+..+...+.+|.+.+.....+.+.+..+.+.+||++|+..+...+..+++.++++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            35679999999999999999999999999888889988777777777788888999999999998888889999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      ++|||++++.+|+.+..|+..+.... ...|++++|||+|+...+.+..+++..+....++.++++|++++.|+.++|++
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence            99999999999999999998876654 45899999999999876777888888888888999999999999999999999


Q ss_pred             HHHHHHH
Q 027703          171 VIREIYS  177 (220)
Q Consensus       171 l~~~~~~  177 (220)
                      |.+.+..
T Consensus       162 l~~~~~~  168 (199)
T cd04110         162 ITELVLR  168 (199)
T ss_pred             HHHHHHH
Confidence            9998865

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04127 Rab27A Rab27a subfamily

Probab=99.97  E-value=5.2e-30  Score=191.76  Aligned_cols=166  Identities=40%  Similarity=0.740  Sum_probs=146.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC----------CeEEEEEEEecCCcchhhhhhH
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID----------GKEVKAQIWDTAGQERFRAVTS   81 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~----------~~~~~~~~~d~~g~~~~~~~~~   81 (220)
                      ++.+||+++|++|||||||++++.+..+...+.+|++.+.....+.+.          +..+.+.+||++|+..+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            467999999999999999999999999999998888877666556553          3568899999999999988899


Q ss_pred             HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCC
Q 027703           82 AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALD  160 (220)
Q Consensus        82 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (220)
                      .++++++++++|||++++.+|..+..|+..+.... ..+.|+++++||.|+...+.+..+++..++...+++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            99999999999999999999999999998876543 34689999999999987778888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREIYS  177 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~  177 (220)
                      +.|++++|++|.+.+.+
T Consensus       162 ~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         162 GTNVEKAVERLLDLVMK  178 (180)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999987654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04125 RabA_like RabA-like subfamily

Probab=99.97  E-value=9.2e-30  Score=191.85  Aligned_cols=165  Identities=45%  Similarity=0.757  Sum_probs=149.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..|...+.+|.+.+.....+.+++..+.+.+||++|...+...+..+++.++++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998888889887777777888888899999999999988888899999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      |.+++.+|..+..|+..+........|+++++||.|+...+.+..+++..++...+++++++||+++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999998877665568999999999998777788888888888888999999999999999999999999


Q ss_pred             HHHHh
Q 027703          175 IYSNI  179 (220)
Q Consensus       175 ~~~~~  179 (220)
                      +..+.
T Consensus       161 ~~~~~  165 (188)
T cd04125         161 IIKRL  165 (188)
T ss_pred             HHHHh
Confidence            87643

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04131 Rnd Rnd subfamily

Probab=99.97  E-value=5.4e-30  Score=191.28  Aligned_cols=158  Identities=32%  Similarity=0.575  Sum_probs=140.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..|+..+.+|.+... ...+.+++..+.+.+|||+|+..+......+++.++++++||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            7999999999999999999999999999999886554 356778888999999999999988888888999999999999


Q ss_pred             eCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEeccCC
Q 027703           95 DITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEGL-FFMETSALD  160 (220)
Q Consensus        95 d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (220)
                      |++++.+|+.+ ..|+..+.... +..|+++||||.||..            .+.+..+++.++++..++ .|+++||++
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            99999999996 78988887665 4689999999999853            245888999999999997 799999999


Q ss_pred             CCC-HHHHHHHHHHH
Q 027703          161 STN-VEAAFEVVIRE  174 (220)
Q Consensus       161 ~~~-v~~l~~~l~~~  174 (220)
                      +.+ ++++|+.+.+.
T Consensus       160 ~~~~v~~~F~~~~~~  174 (178)
T cd04131         160 SEKSVRDIFHVATMA  174 (178)
T ss_pred             CCcCHHHHHHHHHHH
Confidence            995 99999999874

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.97  E-value=6.5e-30  Score=188.70  Aligned_cols=162  Identities=32%  Similarity=0.619  Sum_probs=145.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+++||++|+..+...+..+++.++++++||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999999999999888777777888888899999999999888888888999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCC-----CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCD-----TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      |.+++.+++.+..|+..+.....     .+.|+++++||.|+...+....+++..++.+.+++++++||+++.|+.++++
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999998876543     4689999999999875567788888888888889999999999999999999


Q ss_pred             HHHHHHH
Q 027703          170 VVIREIY  176 (220)
Q Consensus       170 ~l~~~~~  176 (220)
                      +|.+.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9987754

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01864 Rab19 Rab19 subfamily

Probab=99.97  E-value=7.8e-30  Score=188.27  Aligned_cols=162  Identities=52%  Similarity=0.874  Sum_probs=145.5

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      +++||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            57999999999999999999999999988888888777777778888888899999999999888888899999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +||++++.+|+.+..|+..+........|+++++||.|+...+....+++..+++..+. .++++|++++.|++++++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999998776556789999999999987777788888899988775 68999999999999999999


Q ss_pred             HHH
Q 027703          172 IRE  174 (220)
Q Consensus       172 ~~~  174 (220)
                      .+.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04113 Rab4 Rab4 subfamily

Probab=99.97  E-value=9e-30  Score=187.11  Aligned_cols=160  Identities=52%  Similarity=0.863  Sum_probs=146.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999999988888887777777888888899999999999988888889999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      |++++.++..+..|+..+........|+++++||.|+...+.+..+++..++...++.++++|++++.|+.++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999988876666678999999999998777788889999999999999999999999999999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PLN03108 Rab family protein; Provisional

Probab=99.97  E-value=1.7e-29  Score=193.45  Aligned_cols=168  Identities=53%  Similarity=0.897  Sum_probs=151.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      .+.+||+++|++|||||||++++.+..+...+.+|++.+...+.+.+++..+.+.+||++|+..+...+..+++.+++++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999999999888888888877788888888889999999999988888888999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|||+++..+|..+..|+..+........|+++++||.|+...+....+++..+++..+++++++|++++.|+.++|+++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999888766655678999999999998777888899999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 027703          172 IREIYSNI  179 (220)
Q Consensus       172 ~~~~~~~~  179 (220)
                      .+.+.++.
T Consensus       164 ~~~~~~~~  171 (210)
T PLN03108        164 AAKIYKKI  171 (210)
T ss_pred             HHHHHHHh
Confidence            98876543

>cd01875 RhoG RhoG subfamily

Probab=99.97  E-value=1.2e-29  Score=191.69  Aligned_cols=162  Identities=30%  Similarity=0.563  Sum_probs=140.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|.+|||||||++++..+.|+..+.+|.+... ...+.+++..+.+.+||++|+..+...+..++++++++++|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            48999999999999999999999999999999987543 34566788889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHhC-CeEEEeccC
Q 027703           94 YDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIR------------DVSTEEGKSLAEEEG-LFFMETSAL  159 (220)
Q Consensus        94 ~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~  159 (220)
                      ||++++.+|+.+. .|...+.... ...|++++|||.||...+            .+..+++..+++..+ +.|+++||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999997 4777666543 468999999999996542            356778899999888 589999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027703          160 DSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~~~~  177 (220)
                      ++.|++++|+++.+.+..
T Consensus       161 ~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999977643

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04109 Rab28 Rab28 subfamily

Probab=99.97  E-value=1.6e-29  Score=194.35  Aligned_cols=163  Identities=34%  Similarity=0.547  Sum_probs=146.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCC-eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG-KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      +||+++|++|||||||++++.+..|...+.+|.+.+.....+.+++ ..+.+.+||++|+..+...+..+++.+|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999999999998888777777754 578999999999998888888999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCD---TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      ||++++.+|+.+..|+..+.....   ..+|+++++||.|+...+.+..+++..+++..++.++++||+++.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999988776542   34688999999999877888888899999998999999999999999999999


Q ss_pred             HHHHHHH
Q 027703          171 VIREIYS  177 (220)
Q Consensus       171 l~~~~~~  177 (220)
                      +.+.+..
T Consensus       161 l~~~l~~  167 (215)
T cd04109         161 LAAELLG  167 (215)
T ss_pred             HHHHHHh
Confidence            9988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=1.4e-29  Score=195.00  Aligned_cols=166  Identities=29%  Similarity=0.537  Sum_probs=145.3

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ...+||+++|++|||||||++++....+...+.+|.+.......+..++..+.+.+||++|+..+...+..+++.+++++
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            67799999999999999999999999999999999988777777777777899999999999999888889999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|||.+++.+|+.+..|+..+.... ...|++++|||.|+.. +....++. .+.+...+.|+++||+++.|+.++|++|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999887654 4689999999999864 34444555 6677778899999999999999999999


Q ss_pred             HHHHHHHhh
Q 027703          172 IREIYSNIS  180 (220)
Q Consensus       172 ~~~~~~~~~  180 (220)
                      .+.+.+..+
T Consensus       168 ~~~~~~~~~  176 (219)
T PLN03071        168 ARKLAGDPN  176 (219)
T ss_pred             HHHHHcCcc
Confidence            988865443

>cd04128 Spg1 Spg1p

Probab=99.97  E-value=1.7e-29  Score=189.37  Aligned_cols=162  Identities=31%  Similarity=0.566  Sum_probs=140.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +|++++|.+|||||||++++.+..|...+.+|.+.+.....+.+++..+.+.+||++|+..+...+..++++++++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999999999999988777777888888899999999999998888889999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC-----CCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS-----IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      |.+++.+|+.+..|+..+........| +++|||+|+..     .+....+++..+++..++.++++||+++.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999988765444566 57899999842     111224567778888889999999999999999999


Q ss_pred             HHHHHHHH
Q 027703          170 VVIREIYS  177 (220)
Q Consensus       170 ~l~~~~~~  177 (220)
                      ++.+.+.+
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99987754

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04136 Rap_like Rap-like subfamily

Probab=99.97  E-value=1.6e-29  Score=185.92  Aligned_cols=160  Identities=38%  Similarity=0.597  Sum_probs=139.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++....+...+.+|.+ +.....+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999998888887765 334456777888889999999999999888999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      |++++.+|+.+..|+..+.... ....|+++++||+|+...+.+..+++..+.+..+.+++++||+++.|+.++|+++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999988876543 356899999999999766677777788888888899999999999999999999986


Q ss_pred             HH
Q 027703          174 EI  175 (220)
Q Consensus       174 ~~  175 (220)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            53

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04111 Rab39 Rab39 subfamily

Probab=99.97  E-value=3.3e-29  Score=191.95  Aligned_cols=165  Identities=49%  Similarity=0.869  Sum_probs=147.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEe-CCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI-DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      .+||+++|++|||||||++++.+..+...+.+|++.+.....+.+ ++..+.+.+||++|+..+...+..+++.++++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999999988888887777777766 4667899999999999888888899999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      |||++++.+|..+..|+..+..... ...|+++++||.|+...+.+..+++..+++..++.++++|++++.|+.++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998765543 457788999999998777888889999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027703          172 IREIYSN  178 (220)
Q Consensus       172 ~~~~~~~  178 (220)
                      .+.+.+.
T Consensus       162 ~~~~~~~  168 (211)
T cd04111         162 TQEIYER  168 (211)
T ss_pred             HHHHHHH
Confidence            9887654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=4.3e-30  Score=180.60  Aligned_cols=168  Identities=46%  Similarity=0.821  Sum_probs=152.6

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEe-CCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI-DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      .+.+++.++|++-+|||+||+.++.+.|+.-.+||++++.....+.+ +|..+++++|||.|++++++....|+++.-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            35689999999999999999999999999999999999888777766 67889999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcE-EEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCD-TAVGR-MLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF  168 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~-~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  168 (220)
                      ++|||.+++.+|+.+..|+.+...... +..++ ++||.|+||...|++..+||..++...++.|++||++++.|+++.|
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF  165 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF  165 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence            999999999999999999998665544 33444 4789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027703          169 EVVIREIYSNI  179 (220)
Q Consensus       169 ~~l~~~~~~~~  179 (220)
                      +.+.+-+....
T Consensus       166 ~mlaqeIf~~i  176 (213)
T KOG0091|consen  166 DMLAQEIFQAI  176 (213)
T ss_pred             HHHHHHHHHHH
Confidence            99998887643

>cd04112 Rab26 Rab26 subfamily

Probab=99.97  E-value=4.4e-29  Score=188.61  Aligned_cols=164  Identities=51%  Similarity=0.807  Sum_probs=145.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      +||+++|++|||||||++++.+..+.. .+.+|.+.......+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999998864 5667776666666677888889999999999998888888899999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      ||+++..+|+.+..|+..+........|+++++||.|+...+.+..+++..+....+++|+++||+++.|+.++|++|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999998887766567899999999999766777888888998888899999999999999999999998


Q ss_pred             HHHHH
Q 027703          174 EIYSN  178 (220)
Q Consensus       174 ~~~~~  178 (220)
                      .+.+.
T Consensus       161 ~~~~~  165 (191)
T cd04112         161 ELKHR  165 (191)
T ss_pred             HHHHh
Confidence            88754

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.97  E-value=3.6e-29  Score=186.49  Aligned_cols=159  Identities=32%  Similarity=0.526  Sum_probs=137.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      ++||+++|.+|||||||++++....|+..+.||.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            47999999999999999999999999988989986544 34566778889999999999999888888899999999999


Q ss_pred             EeCCCcccHHHHHH-HHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhC-CeEEEeccC
Q 027703           94 YDITRRSSFDSVKR-WLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEG-LFFMETSAL  159 (220)
Q Consensus        94 ~d~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  159 (220)
                      ||++++.+|+.+.. |+..+.... ...|++++|||.|+...            +.+..+++..++++.+ +.|+++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            99999999999974 777776543 46899999999998643            5677888888988876 689999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 027703          160 DSTNVEAAFEVVIRE  174 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~  174 (220)
                      ++.|++++|+.+++.
T Consensus       159 tg~~v~~~f~~~~~~  173 (175)
T cd01874         159 TQKGLKNVFDEAILA  173 (175)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999999998874

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04116 Rab9 Rab9 subfamily

Probab=99.97  E-value=7.5e-29  Score=183.83  Aligned_cols=163  Identities=42%  Similarity=0.716  Sum_probs=143.9

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      ++..+||+++|++|||||||++++.+..+.+.+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            45679999999999999999999999999988888888777777788888899999999999999988899999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhC----CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC-CeEEEeccCCCCCHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHC----DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVE  165 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  165 (220)
                      ++|||++++.+++.+..|...+....    ....|+++++||.|+. .+....+++..++.+.+ .+++++||+++.|+.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            99999999999999999988765433    2458999999999986 46677888989988887 479999999999999


Q ss_pred             HHHHHHHHH
Q 027703          166 AAFEVVIRE  174 (220)
Q Consensus       166 ~l~~~l~~~  174 (220)
                      ++|+++.+.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999998864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.97  E-value=7.9e-29  Score=183.84  Aligned_cols=163  Identities=38%  Similarity=0.630  Sum_probs=142.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      .||+++|++|||||||++++.+..|+..+.+|++.......+.+++..+.+++||++|+.++...+..+++.++++++||
T Consensus         1 ~ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   80 (170)
T cd04108           1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF   80 (170)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence            38999999999999999999999999999999987777777888888899999999999999888999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRD--VSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      |++++.++..+..|+..+... ....+|+++|+||.|+...+.  ...+++..+..+.+..++++||+++.|+.++|+.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l  160 (170)
T cd04108          81 DLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV  160 (170)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            999999999999999887543 344578999999999865433  24566778888888899999999999999999999


Q ss_pred             HHHHHH
Q 027703          172 IREIYS  177 (220)
Q Consensus       172 ~~~~~~  177 (220)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (170)
T cd04108         161 AALTFE  166 (170)
T ss_pred             HHHHHH
Confidence            988754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.97  E-value=7.9e-29  Score=182.36  Aligned_cols=163  Identities=62%  Similarity=0.965  Sum_probs=147.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+......+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999998888888888777778888888889999999999988888888999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      |++++.+++.+..|+..+.......+|+++++||.|+...+....+++..+....+++++++|+.++.|++++++++.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999988877665679999999999987667778888888888889999999999999999999999987


Q ss_pred             HHH
Q 027703          175 IYS  177 (220)
Q Consensus       175 ~~~  177 (220)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            643

Rab GTPases are implicated in vesicle trafficking.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.97  E-value=5.5e-29  Score=184.03  Aligned_cols=160  Identities=31%  Similarity=0.617  Sum_probs=139.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++....+...+.+|.+.+.....+..++..+.+.+||++|+..+...+..++..+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888899888777777777788899999999999988888888999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      |.++..++..+..|+..+..... ..|+++++||+|+.. +... .++..+.....+.++++||+++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999877654 699999999999873 3333 34456666778899999999999999999999988


Q ss_pred             HHH
Q 027703          175 IYS  177 (220)
Q Consensus       175 ~~~  177 (220)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            765

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04175 Rap1 Rap1 subgroup

Probab=99.97  E-value=6.1e-29  Score=183.29  Aligned_cols=160  Identities=36%  Similarity=0.594  Sum_probs=140.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|.+|||||||++++....+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            7999999999999999999999988888888776443 356677888889999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      |.++..+|+.+..|+..+... ...+.|+++++||.|+...+....+++..+++..+++++++||+++.|++++|+++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            999999999999998887654 3467899999999999876667777788888888899999999999999999999987


Q ss_pred             HH
Q 027703          174 EI  175 (220)
Q Consensus       174 ~~  175 (220)
                      .+
T Consensus       161 ~l  162 (164)
T cd04175         161 QI  162 (164)
T ss_pred             Hh
Confidence            54

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04140 ARHI_like ARHI subfamily

Probab=99.97  E-value=6.9e-29  Score=183.26  Aligned_cols=159  Identities=32%  Similarity=0.464  Sum_probs=137.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..|...+.++.+... ...+..+...+.+.+||++|+..+...+..+++.++++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999999888777765332 344556667789999999999988888888889999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      |+++..+++.+..|+..+....   ..+.|+++++||+|+...+.+..+++..++...++.++++||+++.|+.++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999999999887765532   2568999999999997767778888888888889999999999999999999999


Q ss_pred             HHH
Q 027703          172 IRE  174 (220)
Q Consensus       172 ~~~  174 (220)
                      .++
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04144 Ras2 Ras2 subfamily

Probab=99.97  E-value=6.5e-29  Score=187.55  Aligned_cols=161  Identities=39%  Similarity=0.588  Sum_probs=141.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      ||+++|.+|||||||++++.+..|...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999999999888888876443 3455677888899999999999988889999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      .++..+|+.+..|+..+....   ....|++++|||+|+...+.+...++..++...++.++++||+++.|+.++|+++.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999988876543   24689999999999987777888888888888889999999999999999999999


Q ss_pred             HHHHH
Q 027703          173 REIYS  177 (220)
Q Consensus       173 ~~~~~  177 (220)
                      +.+.+
T Consensus       160 ~~l~~  164 (190)
T cd04144         160 RALRQ  164 (190)
T ss_pred             HHHHH
Confidence            87764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=99.97  E-value=1.1e-28  Score=186.05  Aligned_cols=164  Identities=41%  Similarity=0.601  Sum_probs=144.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+++||++|+..+...+..+++.++++++|
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv   83 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV   83 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence            48999999999999999999999999888888876444 45677888888999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      ||++++.+|+.+..|+..+.... ..+.|+++++||.|+...+.+..+++..+....+++++++||+++.|+.++|+++.
T Consensus        84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~  163 (189)
T PTZ00369         84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV  163 (189)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999988876543 35789999999999877677777788888888889999999999999999999999


Q ss_pred             HHHHHH
Q 027703          173 REIYSN  178 (220)
Q Consensus       173 ~~~~~~  178 (220)
                      +.+.+.
T Consensus       164 ~~l~~~  169 (189)
T PTZ00369        164 REIRKY  169 (189)
T ss_pred             HHHHHH
Confidence            877653

>cd01861 Rab6 Rab6 subfamily

Probab=99.97  E-value=1.1e-28  Score=181.23  Aligned_cols=160  Identities=43%  Similarity=0.737  Sum_probs=144.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||++|+..+...+..+++.++++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999999888888888888888888888889999999999998888899999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      |++++.+|+.+..|+..+........|+++++||.|+...+....++...+....++.++++|++++.|++++++++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999998776655568999999999986667778888888888888999999999999999999999864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=6e-30  Score=179.00  Aligned_cols=214  Identities=36%  Similarity=0.620  Sum_probs=180.9

Q ss_pred             CCCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHh
Q 027703            4 EERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAY   83 (220)
Q Consensus         4 ~~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~   83 (220)
                      .++....+...+|++++|+.-+|||||+=++....|..+...|.--.+....+.+.+....+.+|||.|+++|...-.-|
T Consensus         3 ~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIY   82 (218)
T KOG0088|consen    3 LETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIY   82 (218)
T ss_pred             ccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceE
Confidence            34556778899999999999999999999999999999998888777788888888899999999999999999988999


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN  163 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (220)
                      ++..++.++|||++++.+|+.+..|..++.......+.+++||||.||...|.+...++.+++..-+..|++|||+++.|
T Consensus        83 YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~G  162 (218)
T KOG0088|consen   83 YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVG  162 (218)
T ss_pred             EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccC
Confidence            99999999999999999999999999999888777788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCc-chhhhccccceeeeeecCCCCCCCCCccccccc
Q 027703          164 VEAAFEVVIREIYSNISRKVLNS-DAYKAELSVNRVTLVKDGANSSKGSMMDFSCCA  219 (220)
Q Consensus       164 v~~l~~~l~~~~~~~~~~~~~~h-~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~~~~  219 (220)
                      +.++|+.+.....+..+..-.+. .+..-.+-++|.+-+-|..-  .+.+.--.||+
T Consensus       163 i~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~--~a~~sg~~CC~  217 (218)
T KOG0088|consen  163 ISELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEA--EAERSGKRCCR  217 (218)
T ss_pred             HHHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCc--ccccccCCccC
Confidence            99999999988877554433322 22233445566655444322  34444456886

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.97  E-value=1.5e-28  Score=182.33  Aligned_cols=162  Identities=44%  Similarity=0.782  Sum_probs=144.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh-hhhHHhhcCCcEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR-AVTSAYYRGAVGALV   92 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~i~   92 (220)
                      .+||+++|++|||||||++++....++..+.++.+.+.....+.+.+..+.+.+||++|+..+. ..+..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999999998888888877777788888888999999999988775 467778899999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCC---CCCHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALD---STNVEAAF  168 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~l~  168 (220)
                      |||.+++.+|..+..|+..+.... ..+.|+++++||.|+...+.+..+++..++...+++|+++||++   +.++.++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999998877654 35689999999999988788888889899999899999999999   88999999


Q ss_pred             HHHHHHH
Q 027703          169 EVVIREI  175 (220)
Q Consensus       169 ~~l~~~~  175 (220)
                      ..+.+.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            8887654

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.97  E-value=2.2e-28  Score=179.92  Aligned_cols=162  Identities=51%  Similarity=0.841  Sum_probs=145.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      ++||+++|++|||||||++++.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999999887888887777777888888889999999999988888888899999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      +|++++.++..+..|+..+........|+++++||.|+...+....+++..+....++.++++|++++.|+.+++++|.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887766567899999999998866777888888888888899999999999999999999987


Q ss_pred             HH
Q 027703          174 EI  175 (220)
Q Consensus       174 ~~  175 (220)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            64

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.97  E-value=1.8e-28  Score=180.28  Aligned_cols=158  Identities=36%  Similarity=0.657  Sum_probs=141.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC--CeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID--GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      +||+++|++|+|||||++++.+..+...+.+|.+.+.....+.+.  +..+.+.+||++|+..+...+..+++.++++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999999988888888877666666666  777899999999999888888999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      |||.+++.++..+..|+..+.... .+.|+++++||.|+...+.+..+++..++...+++++++|++++.|+++++++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999988876544 4689999999999977677788888899999999999999999999999999987


Q ss_pred             H
Q 027703          173 R  173 (220)
Q Consensus       173 ~  173 (220)
                      +
T Consensus       160 ~  160 (162)
T cd04106         160 E  160 (162)
T ss_pred             H
Confidence            5

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04176 Rap2 Rap2 subgroup

Probab=99.97  E-value=1.4e-28  Score=181.07  Aligned_cols=160  Identities=36%  Similarity=0.579  Sum_probs=139.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|.+|||||||++++....+...+.+|.+ ......+.+++..+.+.+||++|+..+...+..++++++++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            7999999999999999999999999888877764 344566777888888999999999999889999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      |++++.+|..+..|+..+.... ....|+++++||+|+...+.+...++..+....+++++++||+++.|+.++|+++.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999988876543 356899999999998766666777778888778889999999999999999999986


Q ss_pred             HH
Q 027703          174 EI  175 (220)
Q Consensus       174 ~~  175 (220)
                      .+
T Consensus       161 ~l  162 (163)
T cd04176         161 QM  162 (163)
T ss_pred             hc
Confidence            43

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.97  E-value=1.7e-28  Score=180.82  Aligned_cols=161  Identities=43%  Similarity=0.641  Sum_probs=139.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..+...+.++.+.. ....+..++..+.+.+||++|+.++...+..+++.++++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            589999999999999999999999988887776533 3455667778889999999999998888889999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      |++++.+|+.+..|+..+.... ..+.|+++++||.|+...+....+++..++...+.+++++||+++.|++++|+++.+
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            9999999999999888765443 346899999999999776677778888888888999999999999999999999987


Q ss_pred             HHH
Q 027703          174 EIY  176 (220)
Q Consensus       174 ~~~  176 (220)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04126 Rab20 Rab20 subfamily

Probab=99.97  E-value=1.8e-28  Score=188.21  Aligned_cols=158  Identities=32%  Similarity=0.531  Sum_probs=135.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|.+|||||||++++.+..|.. +.+|++.......+    ..+.+.+||++|+..+...+..+++.++++++||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999999875 46666544332222    4578899999999998888899999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC-------------------CCCCCHHHHHHHHHHhC-----
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS-------------------IRDVSTEEGKSLAEEEG-----  150 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~-------------------~~~~~~~~~~~~~~~~~-----  150 (220)
                      |++++.+|..+..|+..+........|++++|||+|+..                   .+.+..+++..++.+.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999988887665555689999999999865                   57888999999998866     


Q ss_pred             ---------CeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          151 ---------LFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       151 ---------~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                               ++|+++||+++.|+.++|+.+.+.+.+
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                     689999999999999999999988765

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PLN03118 Rab family protein; Provisional

Probab=99.97  E-value=5e-28  Score=185.59  Aligned_cols=177  Identities=46%  Similarity=0.727  Sum_probs=150.8

Q ss_pred             CCCCCCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhh
Q 027703            1 MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVT   80 (220)
Q Consensus         1 ~~~~~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~   80 (220)
                      |+...-.+++....+||+++|++|||||||++++++..+. .+.++.+.+.....+.+++..+.+.+||++|+..+...+
T Consensus         1 ~~~~~~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~   79 (211)
T PLN03118          1 MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLT   79 (211)
T ss_pred             CCcccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence            5666677788888999999999999999999999998774 456677766666777788888899999999999998888


Q ss_pred             HHhhcCCcEEEEEEeCCCcccHHHHHHHH-HHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEecc
Q 027703           81 SAYYRGAVGALVVYDITRRSSFDSVKRWL-EELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSA  158 (220)
Q Consensus        81 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (220)
                      ..+++.++++++|||.+++.+|..+..++ ..+.... ....|+++++||.|+...+.+..+++..++...++.|+++||
T Consensus        80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SA  159 (211)
T PLN03118         80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSA  159 (211)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999997644 4444332 245788999999999877777788888888888999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 027703          159 LDSTNVEAAFEVVIREIYSN  178 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~~~~~  178 (220)
                      +++.|++++|++|.+.+.+.
T Consensus       160 k~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        160 KTRENVEQCFEELALKIMEV  179 (211)
T ss_pred             CCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999888654

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.2e-30  Score=181.30  Aligned_cols=180  Identities=39%  Similarity=0.698  Sum_probs=160.4

Q ss_pred             CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC---------CeEEEEEEEecCCcchhhhh
Q 027703            9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID---------GKEVKAQIWDTAGQERFRAV   79 (220)
Q Consensus         9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~---------~~~~~~~~~d~~g~~~~~~~   79 (220)
                      ...++.+|+..+|.+|+||||++.+.+...|..+-..|++++...+.+.++         +..+.+++|||.|+++|++.
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            345677899999999999999999999999999999999998888777663         25689999999999999999


Q ss_pred             hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEecc
Q 027703           80 TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSA  158 (220)
Q Consensus        80 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (220)
                      ...+++.|-+++++||.++++||-.++.|++.+.... .+++.+++.|||+||+..+.++.+++.+++...++||++|||
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA  163 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA  163 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence            9999999999999999999999999999999987543 366788899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhcCcch
Q 027703          159 LDSTNVEAAFEVVIREIYSNISRKVLNSDA  188 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~  188 (220)
                      -++.|+++..+.+..++++.+..-+-...+
T Consensus       164 ~tg~Nv~kave~LldlvM~Rie~~v~~s~~  193 (219)
T KOG0081|consen  164 CTGTNVEKAVELLLDLVMKRIEQCVEKSEI  193 (219)
T ss_pred             ccCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999998866554444333

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.97  E-value=2.7e-28  Score=179.58  Aligned_cols=161  Identities=38%  Similarity=0.581  Sum_probs=139.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|+|||||++++.+..+...+.++.+... .....+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            58999999999999999999999988877777765333 34556778888999999999999988999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      +|+++..+|+.+..|+..+.... ....|+++++||.|+...+.+..+++..++...+++++++||+++.|+.++|+++.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999988876542 35689999999999977666777788888888889999999999999999999998


Q ss_pred             HHH
Q 027703          173 REI  175 (220)
Q Consensus       173 ~~~  175 (220)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.97  E-value=2.3e-28  Score=181.95  Aligned_cols=159  Identities=32%  Similarity=0.544  Sum_probs=136.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      ++|++++|++|||||||++++....|+..+.+|... .....+.+++..+.+.+||++|+..+...+..++++++++++|
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC   79 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence            379999999999999999999999999988888753 3344566788889999999999999888888899999999999


Q ss_pred             EeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccC
Q 027703           94 YDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETSAL  159 (220)
Q Consensus        94 ~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  159 (220)
                      ||++++.+|+.+. .|+..+.... .+.|++++|||.|+...            +.+..+++..++.+.+. .++++||+
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999996 4777665543 46899999999998542            34778889999998884 89999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 027703          160 DSTNVEAAFEVVIRE  174 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~  174 (220)
                      ++.|++++|+.+.+.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999998753

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.97  E-value=4.4e-28  Score=177.86  Aligned_cols=159  Identities=38%  Similarity=0.616  Sum_probs=137.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            7999999999999999999999999888888776433 455667777788999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      |.++..+|..+..|+..+.... ....|+++++||.|+.. +.....++..+....+++++++||+++.|++++|+++.+
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999988888876553 35689999999999865 556677788888888999999999999999999999986


Q ss_pred             HH
Q 027703          174 EI  175 (220)
Q Consensus       174 ~~  175 (220)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            43

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.96  E-value=4.8e-28  Score=185.96  Aligned_cols=161  Identities=29%  Similarity=0.498  Sum_probs=138.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+|+|.+|||||||++++....|+..+.||++... ...+.+++..+.+.+||++|+..+...+..+++.+|++++||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            7999999999999999999999999999999987544 456778889999999999999998888889999999999999


Q ss_pred             eCCCcccHHHHHH-HHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCC
Q 027703           95 DITRRSSFDSVKR-WLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETSALD  160 (220)
Q Consensus        95 d~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (220)
                      |++++.+|+.+.. |...+... .+..|+++||||.|+...            ..++.+++..+++..+. .|++|||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            9999999999954 55555443 356899999999998642            13677889999999985 899999999


Q ss_pred             CCC-HHHHHHHHHHHHHH
Q 027703          161 STN-VEAAFEVVIREIYS  177 (220)
Q Consensus       161 ~~~-v~~l~~~l~~~~~~  177 (220)
                      +.+ +.++|+.+......
T Consensus       160 ~~~~V~~~F~~~~~~~~~  177 (222)
T cd04173         160 SERSVRDVFHVATVASLG  177 (222)
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            885 99999999887654

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04134 Rho3 Rho3 subfamily

Probab=99.96  E-value=3.2e-28  Score=183.61  Aligned_cols=160  Identities=33%  Similarity=0.573  Sum_probs=136.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      ||+++|++|||||||++++.+..|+..+.+|.+... ...+..++..+.+.+||++|+..+...+..+++.++++++|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            899999999999999999999999988888876554 3456677788899999999999888888888999999999999


Q ss_pred             CCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHhC-CeEEEeccCCC
Q 027703           96 ITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIR------------DVSTEEGKSLAEEEG-LFFMETSALDS  161 (220)
Q Consensus        96 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~  161 (220)
                      ++++.+|+.+. .|+..+.... ...|++++|||+|+...+            .+..+++..++...+ +.|+++||+++
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            99999999986 4777776543 468999999999987543            345667777877766 68999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIREIYS  177 (220)
Q Consensus       162 ~~v~~l~~~l~~~~~~  177 (220)
                      .|++++|+++.+.+..
T Consensus       160 ~~v~e~f~~l~~~~~~  175 (189)
T cd04134         160 RGVNEAFTEAARVALN  175 (189)
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999987753

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04123 Rab21 Rab21 subfamily

Probab=99.96  E-value=8.4e-28  Score=176.37  Aligned_cols=161  Identities=40%  Similarity=0.693  Sum_probs=142.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|+|||||++++.+..+...+.++.+.......+...+..+.+.+||++|+..+...+..++..++++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999988877777766666667777777889999999999888888888899999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      |.++..+++.+..|+..+......+.|+++++||+|+...+....++...+....+..++++|++++.|+.++++++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999888877666578999999999998767777778888888889999999999999999999999875


Q ss_pred             H
Q 027703          175 I  175 (220)
Q Consensus       175 ~  175 (220)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            4

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04114 Rab30 Rab30 subfamily

Probab=99.96  E-value=1.5e-27  Score=176.63  Aligned_cols=164  Identities=43%  Similarity=0.766  Sum_probs=144.7

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      .+.+|++++|++|||||||++++.+..+.+.+.++.+.+.....+.+.+..+.+.+||++|+..+...+..++..+++++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999998888888888877777777888888889999999999888888888999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|+|.++..++..+..|+..+........|+++++||.|+...+.+.......+....+..++++|++++.|+.++|++|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  164 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL  164 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999888877666678999999999998777777777777777777899999999999999999999


Q ss_pred             HHHH
Q 027703          172 IREI  175 (220)
Q Consensus       172 ~~~~  175 (220)
                      .+.+
T Consensus       165 ~~~~  168 (169)
T cd04114         165 ACRL  168 (169)
T ss_pred             HHHh
Confidence            8753

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04124 RabL2 RabL2 subfamily

Probab=99.96  E-value=9.8e-28  Score=176.45  Aligned_cols=159  Identities=35%  Similarity=0.603  Sum_probs=136.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..+.+.+.++.+.......+.+++..+.+.+||++|+..+...+..+++.++++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999998888777766666666777888899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      |.+++.+++.+..|+..+.... ...|+++++||.|+...   ...+...+....+++++.+||+++.|++++|+.+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999998886543 35899999999998531   2344556666677899999999999999999999987


Q ss_pred             HHH
Q 027703          175 IYS  177 (220)
Q Consensus       175 ~~~  177 (220)
                      +.+
T Consensus       157 ~~~  159 (161)
T cd04124         157 AVS  159 (161)
T ss_pred             HHh
Confidence            654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.96  E-value=5.9e-28  Score=176.99  Aligned_cols=153  Identities=20%  Similarity=0.330  Sum_probs=129.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++....|++.+.++.+ . ....+.+++..+.+.+||++|+..     ..+++.++++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~-~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-R-FKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-c-eEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            4899999999999999999998888877655432 2 346678888888999999999864     34668899999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCC--CCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLD--SIRDVSTEEGKSLAEEE-GLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      |.+++.+|+.+..|+..+..... ...|++++|||.|+.  ..+.+..+++..++++. ++.|++|||+++.|++++|+.
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999876643 568999999999985  35678888888888776 589999999999999999999


Q ss_pred             HHHH
Q 027703          171 VIRE  174 (220)
Q Consensus       171 l~~~  174 (220)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=8.6e-28  Score=182.14  Aligned_cols=161  Identities=28%  Similarity=0.561  Sum_probs=140.4

Q ss_pred             ECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCc
Q 027703           20 IGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRR   99 (220)
Q Consensus        20 lG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   99 (220)
                      +|.+|||||||++++....|...+.+|++.+.....+.+++..+.+.+||++|+..+...+..+++.++++++|||+++.
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999999888899998888778888888889999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027703          100 SSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI  179 (220)
Q Consensus       100 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  179 (220)
                      .+|..+..|+.++.... ...|++++|||.|+.. +.+..++ ..++...++.|++|||+++.|+.++|++|.+.+.+..
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~  157 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP  157 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcc
Confidence            99999999999887654 4689999999999864 4444444 3667778899999999999999999999998887654


Q ss_pred             hhhh
Q 027703          180 SRKV  183 (220)
Q Consensus       180 ~~~~  183 (220)
                      .+.+
T Consensus       158 ~~~~  161 (200)
T smart00176      158 NLEF  161 (200)
T ss_pred             ccee
Confidence            4433

Ran is involved in the active transport of proteins through nuclear pores.

>cd01862 Rab7 Rab7 subfamily

Probab=99.96  E-value=1.6e-27  Score=176.76  Aligned_cols=164  Identities=40%  Similarity=0.721  Sum_probs=143.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..+...+.++.+.+.....+.+.+..+.+.+||++|+..+...+..+++++++++++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888888877777777888888899999999999888888889999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhC----CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC-CeEEEeccCCCCCHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHC----DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~  169 (220)
                      |+++..+++.+..|...+....    ..+.|+++++||.|+...+....++...+....+ +.++++|++++.|++++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            9999999999888887754433    2368999999999997666777888888888876 7899999999999999999


Q ss_pred             HHHHHHHHH
Q 027703          170 VVIREIYSN  178 (220)
Q Consensus       170 ~l~~~~~~~  178 (220)
                      ++.+.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999887664

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01863 Rab18 Rab18 subfamily

Probab=99.96  E-value=1.6e-27  Score=175.10  Aligned_cols=159  Identities=51%  Similarity=0.883  Sum_probs=140.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +|++++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988878888877766666777888889999999999888888888999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      |.++..+++.+..|+..+.... ....|+++++||+|+. .+....+++..+....+++++++|++++.|++++++++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999999988876654 4568999999999987 3566778888999999999999999999999999999876


Q ss_pred             H
Q 027703          174 E  174 (220)
Q Consensus       174 ~  174 (220)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            4

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04142 RRP22 RRP22 subfamily

Probab=99.96  E-value=1e-27  Score=181.82  Aligned_cols=163  Identities=20%  Similarity=0.253  Sum_probs=134.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh--------hhHHhhcC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------VTSAYYRG   86 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~   86 (220)
                      +||+|+|.+|||||||++++.+..|+..+.||.+.+.....+.+++..+.+.+|||+|...+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999988888887666556677788888999999999643211        12345688


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HhCCeEEEeccCCCC
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-EEGLFFMETSALDST  162 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  162 (220)
                      +|++++|||++++.+|+.+..|+..+....   ....|+++++||+|+...+....+++..++. ..+++|+++||+++.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999988876543   4568999999999997666666666666654 458899999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIREIYS  177 (220)
Q Consensus       163 ~v~~l~~~l~~~~~~  177 (220)
                      |++++|+.+.+....
T Consensus       161 ~v~~lf~~i~~~~~~  175 (198)
T cd04142         161 HILLLFKELLISATT  175 (198)
T ss_pred             CHHHHHHHHHHHhhc
Confidence            999999999987765

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.96  E-value=2.8e-27  Score=174.25  Aligned_cols=160  Identities=32%  Similarity=0.577  Sum_probs=137.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC--cCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN--EFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~--~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      +||+++|++|||||||++++...  .++..+.+|.+.+.....+... +..+.+.+||++|+..+...+..++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            48999999999999999999865  6888888888777665556554 56789999999999888888888999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|||.+++.++..+..|+..+.... ...|+++++||.|+...+.+...++..+....+++++++|++++.|++++++.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999988877654 458999999999997767777777777777778899999999999999999999


Q ss_pred             HHHH
Q 027703          172 IREI  175 (220)
Q Consensus       172 ~~~~  175 (220)
                      .+..
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8753

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=8.4e-30  Score=173.49  Aligned_cols=189  Identities=42%  Similarity=0.700  Sum_probs=163.4

Q ss_pred             EECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCC
Q 027703           19 LIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDIT   97 (220)
Q Consensus        19 ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~   97 (220)
                      ++|.+++|||+|+=++....|-. ....|++++...+.+..++.++++++|||.|+++|++....|++.+|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            68999999999998887776544 45578888888888989999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703           98 RRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus        98 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      +..||+..+.|+.++..+..+...++++|||+|+++++.+..+++..++...+++|+++|+++|-|++..|-.|.+.+.+
T Consensus        82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK  161 (192)
T ss_pred             cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence            99999999999999998888778889999999999999999999999999999999999999999999999988877765


Q ss_pred             HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccccccc
Q 027703          178 NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCA  219 (220)
Q Consensus       178 ~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~~~~  219 (220)
                       .+.-+.+.     .+++++.+|-+.|      .++=.+||+
T Consensus       162 -~~~~~~~~-----~~~~~~~~v~~~~------k~eia~cc~  191 (192)
T KOG0083|consen  162 -LKMGAPPE-----GEFADHDSVADEG------KGEIARCCR  191 (192)
T ss_pred             -hccCCCCC-----CccccchhHHhcC------CCccccccC
Confidence             22222221     3467777665554      566678996

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.96  E-value=3e-27  Score=177.90  Aligned_cols=161  Identities=31%  Similarity=0.530  Sum_probs=136.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      +||+++|++|||||||++++.+..++..+.++.+.... ..+... +..+.+.+||++|+..+...+..+++.++++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            48999999999999999999999999888888765543 345554 6778999999999998888888899999999999


Q ss_pred             EeCCCcccHHHHHH-HHHHHHhhCCCCCcEEEEEecCCCCCC----CCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKR-WLEELTTHCDTAVGRMLVGNKCDLDSI----RDVSTEEGKSLAEEEGL-FFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~v~~k~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l  167 (220)
                      ||+++..+|+.+.. |+..+.... .+.|++++|||.|+...    +.+..+++..++...++ +++++||+++.|+.++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            99999999999864 776665443 46899999999998643    34667888899998888 8999999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          168 FEVVIREIYS  177 (220)
Q Consensus       168 ~~~l~~~~~~  177 (220)
                      |+.+.+.+..
T Consensus       159 f~~l~~~~~~  168 (187)
T cd04132         159 FDTAIEEALK  168 (187)
T ss_pred             HHHHHHHHHh
Confidence            9999988875

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.96  E-value=2.2e-27  Score=185.45  Aligned_cols=161  Identities=27%  Similarity=0.448  Sum_probs=138.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|.+|||||||++++.+..|+..+.+|++ +.....+.+++..+.+.+||++|+..+...+..++..+|++++||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999988888875 444566778888899999999999888777777889999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhh---------CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-hCCeEEEeccCCCCCH
Q 027703           95 DITRRSSFDSVKRWLEELTTH---------CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNV  164 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v  164 (220)
                      |+++..+|+.+..|+..+...         ...+.|+++++||.|+...+.+..+++.+++.. ..+.++++||+++.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998887543         224689999999999976677788888777764 3678999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          165 EAAFEVVIREIY  176 (220)
Q Consensus       165 ~~l~~~l~~~~~  176 (220)
                      +++|++|.+...
T Consensus       160 ~elf~~L~~~~~  171 (247)
T cd04143         160 DEMFRALFSLAK  171 (247)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.96  E-value=1.5e-27  Score=176.01  Aligned_cols=159  Identities=39%  Similarity=0.539  Sum_probs=134.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch-hhhhhHHhhcCCcEEEEEE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-FRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~~~i~v~   94 (220)
                      ||+++|++|||||||++++....+...+.++.... ....+.+++..+.+++||++|+.. +......+++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            68999999999999999999988877777765433 245567788888999999999874 3445667889999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhC--CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCC-CCHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHC--DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDS-TNVEAAFEVV  171 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~v~~l~~~l  171 (220)
                      |++++.+|+.+..|+..+....  ..+.|+++++||+|+...+.+..+++..+++..+.+|+++|++++ .|++++|+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988876643  346899999999999776777888888999888999999999999 5999999999


Q ss_pred             HHHH
Q 027703          172 IREI  175 (220)
Q Consensus       172 ~~~~  175 (220)
                      .+.+
T Consensus       160 ~~~~  163 (165)
T cd04146         160 CREV  163 (165)
T ss_pred             HHHH
Confidence            8754

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.96  E-value=2.4e-27  Score=179.21  Aligned_cols=158  Identities=29%  Similarity=0.456  Sum_probs=127.8

Q ss_pred             eEEEEEECCCCCcHHHHHH-HHhhCc-----CCCCCccccee-eeeEEE--------EEeCCeEEEEEEEecCCcchhhh
Q 027703           14 LFKIVLIGDSAVGKSNLLS-RFARNE-----FDSNSKATIGV-EFQTQV--------VDIDGKEVKAQIWDTAGQERFRA   78 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~-~l~~~~-----~~~~~~~t~~~-~~~~~~--------i~~~~~~~~~~~~d~~g~~~~~~   78 (220)
                      .+||+++|.+|||||||+. ++.+..     |...+.||++. +.....        +.+++..+.+.+|||+|+..  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 665543     45566777742 222111        24678889999999999864  2


Q ss_pred             hhHHhhcCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCC-------------------CCCCC
Q 027703           79 VTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDS-------------------IRDVS  138 (220)
Q Consensus        79 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~-------------------~~~~~  138 (220)
                      ....++++++++++|||.+++.+|+.+. .|+..+.... ...|++++|||+|+..                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            3455789999999999999999999997 4877776654 3689999999999864                   36788


Q ss_pred             HHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703          139 TEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      .+++..++++.++.|++|||+++.|++++|+.+.+.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999998763

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04118 Rab24 Rab24 subfamily

Probab=99.96  E-value=6.6e-27  Score=176.94  Aligned_cols=162  Identities=35%  Similarity=0.575  Sum_probs=139.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      +||+++|++|||||||++++.+..+.. .+.+|++.......+.+++..+.+.+||++|+.++...+..++..++++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            489999999999999999999998875 5777777666666788888889999999999988888888889999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC----CCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI----RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      ||+++..+|+.+..|+..+.... ...|+++++||.|+...    +.+..+++..++...++.++++|++++.|+.++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999988988876543 36899999999998532    34455677788888889999999999999999999


Q ss_pred             HHHHHHHH
Q 027703          170 VVIREIYS  177 (220)
Q Consensus       170 ~l~~~~~~  177 (220)
                      ++.+.+.+
T Consensus       160 ~i~~~~~~  167 (193)
T cd04118         160 KVAEDFVS  167 (193)
T ss_pred             HHHHHHHH
Confidence            99988864

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04177 RSR1 RSR1 subgroup

Probab=99.96  E-value=6e-27  Score=173.39  Aligned_cols=161  Identities=38%  Similarity=0.561  Sum_probs=140.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..+...+.++.+.. ....+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            3799999999999999999999999988888877643 346667788889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC-CeEEEeccCCCCCHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      ||.+++.+++.+..|...+.... ....|+++++||.|+...+....+++.++++..+ ++++++||+.+.|+.++|+++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            99999999999998888776533 3568999999999997777777888888888877 789999999999999999999


Q ss_pred             HHHH
Q 027703          172 IREI  175 (220)
Q Consensus       172 ~~~~  175 (220)
                      ...+
T Consensus       160 ~~~~  163 (168)
T cd04177         160 VRQI  163 (168)
T ss_pred             HHHH
Confidence            8654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd00154 Rab Rab family

Probab=99.96  E-value=7.1e-27  Score=170.40  Aligned_cols=158  Identities=56%  Similarity=0.936  Sum_probs=142.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..+...+.+|.+.+.....+...+..+.+.+||++|+..+...+..++++++++++++
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999999988888888887778888888889999999999988888899999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      |++++.++..+..|+..+........|+++++||.|+........++...+....+.+++++|++++.++.+++++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999888777656789999999999865567788888889888899999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01892 Miro2 Miro2 subfamily

Probab=99.96  E-value=3e-27  Score=175.21  Aligned_cols=163  Identities=19%  Similarity=0.221  Sum_probs=136.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      .+.+|++++|.+|||||||++++.+..|. ..+.+|.+.+.....+.+++..+.+.+||++|+..+...+..++..+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            36799999999999999999999999998 88888888776666777888888899999999988888888889999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVEAAFE  169 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~  169 (220)
                      ++|+|.+++.+++.+..|+..+..  ....|+++++||.|+...+.....+...+....++ .++++||+++.|+.++|+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            999999999999998888876532  23689999999999865444444455566666666 468899999999999999


Q ss_pred             HHHHHHH
Q 027703          170 VVIREIY  176 (220)
Q Consensus       170 ~l~~~~~  176 (220)
                      .+.+.+.
T Consensus       160 ~l~~~~~  166 (169)
T cd01892         160 KLATAAQ  166 (169)
T ss_pred             HHHHHhh
Confidence            9987754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04148 RGK RGK subfamily

Probab=99.96  E-value=6.2e-27  Score=180.52  Aligned_cols=160  Identities=32%  Similarity=0.418  Sum_probs=135.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc-CCcEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR-GAVGALV   92 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~-~~~~~i~   92 (220)
                      +||+++|++|||||||++++.+..+. ..+.++.+.+.....+.+++..+.+.+||++|+.  ......++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999888876 6676766545556677788888899999999987  223344556 8999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      |||+++..+|+.+..|+..+.... ....|+++++||.|+...+.+..+++..++...++.++++||+++.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999988876653 3568999999999998777788888888888888999999999999999999999


Q ss_pred             HHHHH
Q 027703          172 IREIY  176 (220)
Q Consensus       172 ~~~~~  176 (220)
                      .+.+.
T Consensus       159 ~~~~~  163 (221)
T cd04148         159 VRQIR  163 (221)
T ss_pred             HHHHH
Confidence            98885

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.3e-27  Score=162.46  Aligned_cols=172  Identities=51%  Similarity=0.847  Sum_probs=159.1

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      +-+..+++|+.|+|.-|+|||+|++.+....|...-+.|+++++-...+...++++++++||+.|+++|+.....+++.+
T Consensus         5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga   84 (215)
T KOG0097|consen    5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA   84 (215)
T ss_pred             ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      .+.++|+|.+.+..+..+..|+...+...+++..++++|||.||...+.+..+++.+++.+.++.|+++|+++|+|+++.
T Consensus        85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda  164 (215)
T KOG0097|consen   85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA  164 (215)
T ss_pred             cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence            99999999999999999999999887777777888999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHh
Q 027703          168 FEVVIREIYSNI  179 (220)
Q Consensus       168 ~~~l~~~~~~~~  179 (220)
                      |-...+.+.++.
T Consensus       165 fle~akkiyqni  176 (215)
T KOG0097|consen  165 FLETAKKIYQNI  176 (215)
T ss_pred             HHHHHHHHHHhh
Confidence            877777766543

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.96  E-value=5.7e-27  Score=174.31  Aligned_cols=158  Identities=34%  Similarity=0.594  Sum_probs=135.2

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeC
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDI   96 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~   96 (220)
                      |+|+|++|||||||++++.+..++..+.++..... ...+.+++..+.+.+||++|+..+...+..+++.++++++|||.
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999999888887765433 45667788888999999999998888888899999999999999


Q ss_pred             CCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCCCC
Q 027703           97 TRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETSALDST  162 (220)
Q Consensus        97 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (220)
                      +++.+|+.+. .|+..+.... ...|++++|||.|+...            +.+..+++..+++..+. .++++||+++.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999986 4777776654 46899999999998642            23677788889999886 89999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIREIY  176 (220)
Q Consensus       163 ~v~~l~~~l~~~~~  176 (220)
                      |++++|+.+.+.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999987753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.96  E-value=8.7e-27  Score=173.34  Aligned_cols=157  Identities=33%  Similarity=0.543  Sum_probs=134.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +|++++|++|+|||||++++.+..|...+.+|.. +.....+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            5899999999999999999999999988888763 344556777888899999999999988888888899999999999


Q ss_pred             eCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEeccCC
Q 027703           95 DITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEGL-FFMETSALD  160 (220)
Q Consensus        95 d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (220)
                      |.+++.+|+.+. .|+..+.... ...|+++++||.|+..            .+.+..+++..+++..+. .++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999985 5777766432 3589999999999853            356677889999998887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIR  173 (220)
Q Consensus       161 ~~~v~~l~~~l~~  173 (220)
                      +.|++++|+.+..
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=99.95  E-value=4.1e-26  Score=169.69  Aligned_cols=159  Identities=32%  Similarity=0.507  Sum_probs=133.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|+|||||++++.+..+...+.++... .....+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            58999999999999999999999998887777643 33445667888888999999999988888888899999999999


Q ss_pred             eCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCC
Q 027703           95 DITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETSALD  160 (220)
Q Consensus        95 d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (220)
                      |.+++.+|+.+. .|...+... ....|+++++||.|+...            +.+..+++..+++..+. .++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999986 466666554 456899999999998542            25667788888888886 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREI  175 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~  175 (220)
                      +.|++++|+.+.+.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999988653

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.95  E-value=8.7e-26  Score=166.04  Aligned_cols=161  Identities=39%  Similarity=0.604  Sum_probs=138.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++....+...+.++.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999998887777765433 455667778899999999999988888899999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      |.+++.++..+..|+..+.... ....|+++++||.|+...+.....+...+..+.+++++++|++++.|++++|+++.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999888866543 356899999999998764556777778888888899999999999999999999987


Q ss_pred             HHH
Q 027703          174 EIY  176 (220)
Q Consensus       174 ~~~  176 (220)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            664

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.95  E-value=5.6e-26  Score=166.32  Aligned_cols=158  Identities=41%  Similarity=0.654  Sum_probs=138.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      ||+++|++|||||||++++.+..+...+.++.. ......+.+++..+.+.+||++|...+...+..++..++++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999999888888777765 4455666777777899999999998888888889999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      .++..++..+..|+..+..... ...|+++++||+|+...+....+++..+....+.+++++|++++.|+.+++++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999998888766544 578999999999987767778888989998888999999999999999999999864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.95  E-value=1.1e-25  Score=167.61  Aligned_cols=159  Identities=33%  Similarity=0.562  Sum_probs=131.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      .||+++|++|||||||++++.+..++..+.+|.+... ...+.+++..+.+.+||++|+..+...+...+.+++++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            6899999999999999999999999988888876443 356777888889999999999888877777889999999999


Q ss_pred             eCCCcccHHHHHH-HHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCC
Q 027703           95 DITRRSSFDSVKR-WLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETSALD  160 (220)
Q Consensus        95 d~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (220)
                      |+++..+|+.+.. |...+.... .+.|+++++||.|+...            ..+...++..++...+. .++++||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            9999999988854 666665543 46899999999998532            23445677788877664 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREI  175 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~  175 (220)
                      +.|++++|++|.+..
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.95  E-value=1.8e-25  Score=171.94  Aligned_cols=172  Identities=28%  Similarity=0.514  Sum_probs=144.5

Q ss_pred             CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703            9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (220)
Q Consensus         9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~   88 (220)
                      ..+...+|++++|++|||||||++++....+...+.+|.+.+.....+..++..+.+.+||++|+..+...+..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            34455699999999999999999988888898899999988887777777888899999999999888888888899999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHH
Q 027703           89 GALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF  168 (220)
Q Consensus        89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  168 (220)
                      ++++|||.++..+|..+..|+..+.... ++.|+++++||.|+.. +....+ ...+....++.++++|++++.++++.|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999988876553 4689999999999854 333333 335666778899999999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 027703          169 EVVIREIYSNISRKV  183 (220)
Q Consensus       169 ~~l~~~~~~~~~~~~  183 (220)
                      .+|.+.+..+..+++
T Consensus       161 ~~ia~~l~~~p~~~~  175 (215)
T PTZ00132        161 LWLARRLTNDPNLVF  175 (215)
T ss_pred             HHHHHHHhhccccee
Confidence            999998876555544

>cd04129 Rho2 Rho2 subfamily

Probab=99.95  E-value=1.5e-25  Score=168.76  Aligned_cols=160  Identities=36%  Similarity=0.583  Sum_probs=131.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +|++++|++|+|||||++++....+++.+.++..... ...+.+++..+.+.+||++|+..+.......+..+++++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            6999999999999999999998888877776654333 345667777888999999998877666666778999999999


Q ss_pred             eCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCC----------CCCCCHHHHHHHHHHhCC-eEEEeccCCCC
Q 027703           95 DITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDS----------IRDVSTEEGKSLAEEEGL-FFMETSALDST  162 (220)
Q Consensus        95 d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (220)
                      ++++..+|+.+. .|+..+..... +.|++++|||.|+..          .+.+..+++..+++..+. .|+++||+++.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999987 47777765443 599999999999853          244556778888888885 89999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIREIY  176 (220)
Q Consensus       163 ~v~~l~~~l~~~~~  176 (220)
                      |++++|+++.+.+.
T Consensus       160 ~v~~~f~~l~~~~~  173 (187)
T cd04129         160 GVDDVFEAATRAAL  173 (187)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999997664

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.94  E-value=3e-25  Score=166.02  Aligned_cols=162  Identities=40%  Similarity=0.596  Sum_probs=138.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      .||+++|++|||||||++++.+..+...+.++..... ...+..++..+.+.+||++|+..+...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999988877777664333 455667777788999999999988888888999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      |.++..+++.+..|+..+.... ....|+++++||+|+...+....++...+....+.+++++|++++.++.++++++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999888865543 356799999999998766666777777888888889999999999999999999998


Q ss_pred             HHHH
Q 027703          174 EIYS  177 (220)
Q Consensus       174 ~~~~  177 (220)
                      .+..
T Consensus       161 ~~~~  164 (180)
T cd04137         161 EIEK  164 (180)
T ss_pred             HHHH
Confidence            7764

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04149 Arf6 Arf6 subfamily

Probab=99.94  E-value=7.3e-26  Score=167.62  Aligned_cols=153  Identities=21%  Similarity=0.358  Sum_probs=121.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++....+.. +.+|.+....  .+..  ..+.+.+||++|+..+...+..++..++++++|
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            4899999999999999999998877753 5566665443  2323  457899999999998888888999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +|++++.++..+..|+..+... ..+..|+++++||+|+..  ....+++......     ..+.++++||+++.|+.++
T Consensus        84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~  161 (168)
T cd04149          84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG  161 (168)
T ss_pred             EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence            9999999999988887775432 234589999999999864  3455665554421     2346889999999999999


Q ss_pred             HHHHHH
Q 027703          168 FEVVIR  173 (220)
Q Consensus       168 ~~~l~~  173 (220)
                      |+||.+
T Consensus       162 ~~~l~~  167 (168)
T cd04149         162 LTWLSS  167 (168)
T ss_pred             HHHHhc
Confidence            999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04158 ARD1 ARD1 subfamily

Probab=99.94  E-value=7.7e-26  Score=167.66  Aligned_cols=156  Identities=22%  Similarity=0.372  Sum_probs=125.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      ||+++|++|||||||++++.+..+.. +.+|.+....  .+.+  ..+.+.+||++|+..+...+..+++.++++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999987764 5666654442  3333  45788999999998888888899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC------CeEEEeccCCCCCHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG------LFFMETSALDSTNVEAAF  168 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~  168 (220)
                      .+++.++..+..|+..+.... ....|+++++||+|+..  ....+++..++...+      +.++++||+++.|+.++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            999999999988888865432 34579999999999864  456666666654222      367789999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          169 EVVIREIYSN  178 (220)
Q Consensus       169 ~~l~~~~~~~  178 (220)
                      +||.+.+.++
T Consensus       154 ~~l~~~~~~~  163 (169)
T cd04158         154 DWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHhhc
Confidence            9999877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.94  E-value=1.3e-26  Score=170.97  Aligned_cols=153  Identities=22%  Similarity=0.306  Sum_probs=124.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .|+++|++|||||||++++.+..+...+.+|.+...    ..++...+.+.+||++|+..+...+..+++.++++++|+|
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            479999999999999999999988888888877542    2344456889999999999998899999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCH----HHHHHHHHHhCCeEEEeccCC------CCCHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVST----EEGKSLAEEEGLFFMETSALD------STNVE  165 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~v~  165 (220)
                      .++..++.....|+..+.... ...|+++++||.|+...+....    .++..++++.++.++++||++      ++|++
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999988888775443 4689999999999876543221    123455556678888877777      99999


Q ss_pred             HHHHHHHH
Q 027703          166 AAFEVVIR  173 (220)
Q Consensus       166 ~l~~~l~~  173 (220)
                      ++|+.+..
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.94  E-value=1.4e-25  Score=168.90  Aligned_cols=164  Identities=41%  Similarity=0.575  Sum_probs=150.6

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..+|++++|.+|+|||+|..++....|...+.||+. +.+...+.+++..+.+.++||+|+..+......+....+++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            358999999999999999999999999999999987 5556788888999999999999998888899999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      ||++++..||+.+..++..+.+. .....|++++|||+|+...+.+..+++.+++...++.|+++||+...+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            99999999999999999888443 33568999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027703          172 IREIYS  177 (220)
Q Consensus       172 ~~~~~~  177 (220)
                      .+.+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            987765

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.94  E-value=1.8e-25  Score=167.43  Aligned_cols=157  Identities=20%  Similarity=0.335  Sum_probs=121.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++....+. .+.||.+....  .+..  ..+.+.+||++|+..+...+..++++++++++|
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V   91 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            489999999999999999999887776 45677665433  2333  457899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-----CCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-----GLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~l  167 (220)
                      +|+++..++..+..++..+... ...+.|+++++||+|+...  ...++....+.-.     .+.++++||++++|+.++
T Consensus        92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~  169 (181)
T PLN00223         92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
T ss_pred             EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence            9999999999887777665332 2246899999999998753  3444433333211     124567999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          168 FEVVIREIYS  177 (220)
Q Consensus       168 ~~~l~~~~~~  177 (220)
                      |+||.+.+..
T Consensus       170 ~~~l~~~~~~  179 (181)
T PLN00223        170 LDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHhh
Confidence            9999877654

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.94  E-value=1.9e-25  Score=163.92  Aligned_cols=152  Identities=20%  Similarity=0.366  Sum_probs=117.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|.+|||||||++++....+. .+.||.+....  .+..  ..+.+.+||++|+..+...+..++++++++++|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999887776 46677665432  3333  3578999999999988888999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEAAF  168 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~  168 (220)
                      |.++..++..+.+++..+... ...+.|+++++||+|+....  ..++......     +..+.++++||+++.|+.++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999998877775432 23468999999999986432  2333222221     223457789999999999999


Q ss_pred             HHHHH
Q 027703          169 EVVIR  173 (220)
Q Consensus       169 ~~l~~  173 (220)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd00157 Rho Rho (Ras homology) family

Probab=99.94  E-value=4.3e-25  Score=163.58  Aligned_cols=157  Identities=38%  Similarity=0.620  Sum_probs=129.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..+...+.++.. ......+..++..+.+.+||++|+..+......+++.++++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999998777776664 333445666788889999999999877777777889999999999


Q ss_pred             eCCCcccHHHHHH-HHHHHHhhCCCCCcEEEEEecCCCCCCC-----------CCCHHHHHHHHHHhCC-eEEEeccCCC
Q 027703           95 DITRRSSFDSVKR-WLEELTTHCDTAVGRMLVGNKCDLDSIR-----------DVSTEEGKSLAEEEGL-FFMETSALDS  161 (220)
Q Consensus        95 d~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~v~~k~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  161 (220)
                      |.+++.+|..... |+..+.... .+.|+++++||+|+....           .+..+++..+....+. .++++|++++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            9999999888654 555555543 369999999999986544           2356778888888887 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIR  173 (220)
Q Consensus       162 ~~v~~l~~~l~~  173 (220)
                      .|+++++++|.+
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.94  E-value=5.2e-25  Score=167.26  Aligned_cols=160  Identities=29%  Similarity=0.440  Sum_probs=132.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      ||+++|++|||||||++++.+..+...+.++.. ......+.+.+..+.+.+||++|+..+...+..++..++++++|+|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999998887776664 3445567777878899999999998888778888999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCC-CCCCCHHHHHHHHH-HhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS-IRDVSTEEGKSLAE-EEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      .+++.+++.+..|+..+..... ...|+++++||.|+.. .+.+..+++..... ..+..++++|++++.|+.++|+++.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999988887665543 5689999999999864 34455555544443 4467899999999999999999999


Q ss_pred             HHHH
Q 027703          173 REIY  176 (220)
Q Consensus       173 ~~~~  176 (220)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8664

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.94  E-value=4.6e-25  Score=165.38  Aligned_cols=157  Identities=22%  Similarity=0.362  Sum_probs=120.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++....+.. +.+|.+....  .+.+  ..+.+.+||++|+..+...+..+++.++++++|
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            4899999999999999999998877764 5567664432  3333  447899999999999888999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +|++++.++.....++..+... ...+.|+++++||+|+..  ....++.......     ..+.++++||+++.|+.++
T Consensus        92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~  169 (182)
T PTZ00133         92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG  169 (182)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence            9999999999988777765322 234689999999999864  2233332222211     1235678999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          168 FEVVIREIYS  177 (220)
Q Consensus       168 ~~~l~~~~~~  177 (220)
                      |++|.+.+..
T Consensus       170 ~~~l~~~i~~  179 (182)
T PTZ00133        170 LDWLSANIKK  179 (182)
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.94  E-value=5.1e-25  Score=164.13  Aligned_cols=155  Identities=21%  Similarity=0.352  Sum_probs=120.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++....+. .+.+|.+....  .+.+  ..+.+.+||++|+..+...+..+++.++++++|
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v   87 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV   87 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            489999999999999999999877764 35667665443  2333  347899999999999988999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +|.+++.+++...+|+..+... .....|+++++||+|+...  ...++......     ...+.++++||+++.|+.++
T Consensus        88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  165 (175)
T smart00177       88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG  165 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence            9999999999998888876433 2246899999999998653  23333322221     12335667999999999999


Q ss_pred             HHHHHHHH
Q 027703          168 FEVVIREI  175 (220)
Q Consensus       168 ~~~l~~~~  175 (220)
                      |+||.+.+
T Consensus       166 ~~~l~~~~  173 (175)
T smart00177      166 LTWLSNNL  173 (175)
T ss_pred             HHHHHHHh
Confidence            99998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04154 Arl2 Arl2 subfamily

Probab=99.94  E-value=3.7e-25  Score=164.57  Aligned_cols=159  Identities=23%  Similarity=0.359  Sum_probs=123.7

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      ...++..+||+++|++|||||||++++.+..+. .+.+|.+..  ...+.++  .+.+.+||++|+..+...+..+++.+
T Consensus         8 ~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~   82 (173)
T cd04154           8 QKLKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFEST   82 (173)
T ss_pred             hhcCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCC
Confidence            344455689999999999999999999988553 445565533  2334444  37889999999998888888999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCC
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDS  161 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  161 (220)
                      +++++|+|+++..++.....|+..+... ...+.|+++++||+|+...  ...++......     ...++++++||+++
T Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  160 (173)
T cd04154          83 DALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTG  160 (173)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCC
Confidence            9999999999999999888887775432 2356899999999998653  24555555442     34568999999999


Q ss_pred             CCHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIR  173 (220)
Q Consensus       162 ~~v~~l~~~l~~  173 (220)
                      .|+.++|+++.+
T Consensus       161 ~gi~~l~~~l~~  172 (173)
T cd04154         161 EGLLQGIDWLVD  172 (173)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999863

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.94  E-value=1.2e-24  Score=163.19  Aligned_cols=160  Identities=25%  Similarity=0.390  Sum_probs=125.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEe-CCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI-DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      +||+++|++|||||||++++....+... .+|.+.......+.. ++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   82 (183)
T cd04152           4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV   82 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence            7999999999999999999999887654 566655554444443 34568899999999998888899999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH--H----hCCeEEEeccCCCCCHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE--E----EGLFFMETSALDSTNVEA  166 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~--~----~~~~~~~~Sa~~~~~v~~  166 (220)
                      +|+++..++..+..|+..+.... ....|+++++||.|+..  ....++...+..  +    ..++++++||+++.|+++
T Consensus        83 ~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  160 (183)
T cd04152          83 VDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE  160 (183)
T ss_pred             EECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence            99999888988888877765432 34689999999999864  334444444432  1    124678899999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          167 AFEVVIREIYS  177 (220)
Q Consensus       167 l~~~l~~~~~~  177 (220)
                      ++++|.+.+.+
T Consensus       161 l~~~l~~~l~~  171 (183)
T cd04152         161 GLEKLYEMILK  171 (183)
T ss_pred             HHHHHHHHHHH
Confidence            99999988864

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.93  E-value=1.2e-24  Score=164.88  Aligned_cols=149  Identities=21%  Similarity=0.376  Sum_probs=123.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-----CeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-----GKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      +||+++|.+|||||||++++.+..|...+.+|++.......+.+.     +..+.+.+||++|+..+...+..+++++++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999999999998876666666653     467899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhh-------------------CCCCCcEEEEEecCCCCCCCCCCHHH----HHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTH-------------------CDTAVGRMLVGNKCDLDSIRDVSTEE----GKSLA  146 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~-------------------~~~~~~~~~v~~k~Dl~~~~~~~~~~----~~~~~  146 (220)
                      +++|||++++.+|+.+..|+.++...                   ...+.|++++|||.|+...+.+...+    +..++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            99999999999999999999987643                   12468999999999997666555553    44556


Q ss_pred             HHhCCeEEEeccCCCCC
Q 027703          147 EEEGLFFMETSALDSTN  163 (220)
Q Consensus       147 ~~~~~~~~~~Sa~~~~~  163 (220)
                      .+.+++.+..++.++..
T Consensus       161 ~~~~~~~i~~~c~~~~~  177 (202)
T cd04102         161 EQGNAEEINLNCTNGRL  177 (202)
T ss_pred             HhcCCceEEEecCCccc
Confidence            66788777766665443

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01893 Miro1 Miro1 subfamily

Probab=99.93  E-value=3.4e-24  Score=158.32  Aligned_cols=158  Identities=30%  Similarity=0.373  Sum_probs=120.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      .||+++|.+|||||||++++.+..++..++.+..  .......+++..+.+.+||++|...+...+..++..++++++|+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            3899999999999999999999998766544322  22334455667789999999999877666777789999999999


Q ss_pred             eCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC--HHHHHHHHHHh-C-CeEEEeccCCCCCHHHHHH
Q 027703           95 DITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS--TEEGKSLAEEE-G-LFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        95 d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~~v~~l~~  169 (220)
                      |.+++.+++.+. .|+..+.... ...|+++++||+|+...+...  .++...+.... . ..++++||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999986 4666666544 368999999999987544321  22333333333 2 3789999999999999999


Q ss_pred             HHHHHH
Q 027703          170 VVIREI  175 (220)
Q Consensus       170 ~l~~~~  175 (220)
                      .+.+.+
T Consensus       158 ~~~~~~  163 (166)
T cd01893         158 YAQKAV  163 (166)
T ss_pred             HHHHHh
Confidence            888765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=1.9e-27  Score=176.01  Aligned_cols=177  Identities=20%  Similarity=0.299  Sum_probs=120.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh------hHHhhcCC--
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV------TSAYYRGA--   87 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~------~~~~~~~~--   87 (220)
                      .++|+||+||||||||++|.+.+.+           ..|.+.++|..+.... +..   ..+..      ..+++.+.  
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~~-----------~~G~I~i~g~~~~~~~-~~~---~~R~~vGmVFQ~fnLFPHlTv   94 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEEP-----------DSGSITVDGEDVGDKK-DIL---KLRRKVGMVFQQFNLFPHLTV   94 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcCC-----------CCceEEECCEeccchh-hHH---HHHHhcCeecccccccccchH
Confidence            4899999999999999999999655           4566667664432111 110   00000      00111111  


Q ss_pred             -----cEEEEEEeCCCcccHHHHHHHHHHH--HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703           88 -----VGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA  158 (220)
Q Consensus        88 -----~~~i~v~d~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa  158 (220)
                           .+-+.+.-....+..+...+++..+  ....+..+..++.|.|+.        +..||+++-+|++.+||  |||
T Consensus        95 leNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQR--------VAIARALaM~P~vmLFDEPTSA  166 (240)
T COG1126          95 LENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQR--------VAIARALAMDPKVMLFDEPTSA  166 (240)
T ss_pred             HHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHH--------HHHHHHHcCCCCEEeecCCccc
Confidence                 1112222233333344444444442  222222233344444444        45577999999999999  999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          159 LDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      +||+-+.++++.+.++..++.|++++||++.+|...||||++|++|++++.|+|+++
T Consensus       167 LDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~  223 (240)
T COG1126         167 LDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF  223 (240)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence            999999999999999999999999999999999999999999999999999998875

>cd04157 Arl6 Arl6 subfamily

Probab=99.93  E-value=1.9e-24  Score=158.74  Aligned_cols=152  Identities=20%  Similarity=0.331  Sum_probs=116.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc-CCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE-FDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +|+++|++|||||||++++.+.. +...+.+|.+.....  +.  ...+.+.+||++|...+...+..+++.++++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            58999999999999999999976 355566776643322  22  24578899999999998889999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  166 (220)
                      |+++..++..+..|+..+....   ....|+++++||+|+....  ..++......     ...+.++++||+++.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999988888877764421   2468999999999986532  2333222221     1234688999999999999


Q ss_pred             HHHHHHH
Q 027703          167 AFEVVIR  173 (220)
Q Consensus       167 l~~~l~~  173 (220)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.92  E-value=2.7e-24  Score=159.06  Aligned_cols=151  Identities=21%  Similarity=0.316  Sum_probs=119.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      +|+++|++|||||||++++.+. +...+.+|.+...  ..+.+.  .+.+.+||++|+..+...+..+++.++++++|+|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999987 7777778876543  344443  4788999999999888899999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHH------HHHHHH--hCCeEEEeccCCC-----
Q 027703           96 ITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEG------KSLAEE--EGLFFMETSALDS-----  161 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~------~~~~~~--~~~~~~~~Sa~~~-----  161 (220)
                      +++..++..+..|+..+.... ....|+++++||+|+...+  ...+.      ..++.+  .++.++.+||+++     
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~  153 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI  153 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence            999999999988888876543 2468999999999987644  22221      122211  2346777999998     


Q ss_pred             -CCHHHHHHHHHH
Q 027703          162 -TNVEAAFEVVIR  173 (220)
Q Consensus       162 -~~v~~l~~~l~~  173 (220)
                       .|+.+.|+||..
T Consensus       154 ~~g~~~~~~wl~~  166 (167)
T cd04161         154 DPSIVEGLRWLLA  166 (167)
T ss_pred             ccCHHHHHHHHhc
Confidence             899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00879 Sar1 Sar1 subfamily

Probab=99.92  E-value=7.9e-24  Score=159.66  Aligned_cols=154  Identities=22%  Similarity=0.300  Sum_probs=123.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+|++++|++|||||||++++.+..+. .+.+|.+.  ..+.+.+.+  +.+.+||++|+..+...+..+++.++++++|
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV   93 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL   93 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            589999999999999999999988764 45555543  345555654  6788999999988888888899999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH----------------hCCeEEEe
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE----------------EGLFFMET  156 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~~  156 (220)
                      +|.++..++.....++..+.... ..+.|+++++||+|+..  ....++.+.....                ..+.++++
T Consensus        94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (190)
T cd00879          94 VDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC  171 (190)
T ss_pred             EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence            99999988988888877765432 24589999999999864  5566676666543                22468889


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 027703          157 SALDSTNVEAAFEVVIRE  174 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~  174 (220)
                      ||++++|+.++|+||.+.
T Consensus       172 Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         172 SVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EecCCCChHHHHHHHHhh
Confidence            999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.92  E-value=8.9e-24  Score=157.36  Aligned_cols=157  Identities=27%  Similarity=0.417  Sum_probs=125.5

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      .+..+||+++|+.||||||++++|....+.. ..||.+...  ..+.+.+  +.+.+||++|+..+...|..++..++++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence            3667999999999999999999999875443 456655543  3444544  6788999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH------hCCeEEEeccCCCCC
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE------EGLFFMETSALDSTN  163 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~  163 (220)
                      +||+|.++...+.+..+.+..+... .....|+++++||+|+..  ....++......-      .++.++.+|+.+|+|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            9999999999999888877775543 235689999999999875  4456665554432      344578899999999


Q ss_pred             HHHHHHHHHHH
Q 027703          164 VEAAFEVVIRE  174 (220)
Q Consensus       164 v~~l~~~l~~~  174 (220)
                      +.+.++||.+.
T Consensus       164 v~e~l~WL~~~  174 (175)
T PF00025_consen  164 VDEGLEWLIEQ  174 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.92  E-value=9.5e-24  Score=157.16  Aligned_cols=153  Identities=21%  Similarity=0.351  Sum_probs=118.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..+.. +.+|.+...  ..+.++  .+.+.+||++|+..+...+..+++.++++++|
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            4799999999999999999999888765 455655433  333343  47899999999998888888999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHhCCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-----EEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +|++++.++.....++..+... .....|+++++||+|+..  ....++.....     .+.++.++++||+++.|++++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~  167 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG  167 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence            9999998888887776665432 224589999999999864  23444422222     233457899999999999999


Q ss_pred             HHHHHH
Q 027703          168 FEVVIR  173 (220)
Q Consensus       168 ~~~l~~  173 (220)
                      +++|.+
T Consensus       168 ~~~l~~  173 (174)
T cd04153         168 LDWIAS  173 (174)
T ss_pred             HHHHhc
Confidence            999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.92  E-value=1.4e-23  Score=153.89  Aligned_cols=152  Identities=24%  Similarity=0.424  Sum_probs=116.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      ||+++|++|||||||++++.+..+... .+|.+...  ..+... ..+.+.+||++|+..+...+..++..++++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999987643 45555432  333333 45789999999998888888889999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH------HhCCeEEEeccCCCCCHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE------EEGLFFMETSALDSTNVEAAF  168 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~l~  168 (220)
                      +++..++.....|+..+.... ..+.|+++++||+|+...  ...++......      ..+++++++||+++.|+.++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            999888998888877754432 256899999999998642  23344332221      123468899999999999999


Q ss_pred             HHHHH
Q 027703          169 EVVIR  173 (220)
Q Consensus       169 ~~l~~  173 (220)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.92  E-value=2.1e-24  Score=159.48  Aligned_cols=163  Identities=35%  Similarity=0.578  Sum_probs=146.3

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      .-+|++|+|..++|||+|+-.+..+.|+..+.||+. +.+...+.++ ++.+.+.+|||.|++++...+...+.++|.++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            458999999999999999999999999999999996 7777888895 99999999999999998887777889999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhC-CeEEEec
Q 027703           92 VVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEG-LFFMETS  157 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  157 (220)
                      +||++.++++|+.+. .|+.++...+ +..|++++|+|.||+..            ..+..+++++++++.+ ..|+++|
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS  160 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS  160 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence            999999999999975 5989998887 46999999999999732            3577888999999998 5799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 027703          158 ALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       158 a~~~~~v~~l~~~l~~~~~~  177 (220)
                      |++..|++++|+...+....
T Consensus       161 a~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhc
Confidence            99999999999999988765

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.92  E-value=2.1e-23  Score=146.98  Aligned_cols=163  Identities=22%  Similarity=0.357  Sum_probs=130.0

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      ...++..++|.|+|++||||||+++++.+.. ++...||.++...+  +.+  +.+++++||++|+...+..|.+||...
T Consensus        10 ~k~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ikt--l~~--~~~~L~iwDvGGq~~lr~~W~nYfest   84 (185)
T KOG0073|consen   10 QKLKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKT--LEY--KGYTLNIWDVGGQKTLRSYWKNYFEST   84 (185)
T ss_pred             HHhhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEE--EEe--cceEEEEEEcCCcchhHHHHHHhhhcc
Confidence            3456679999999999999999999999886 44555676654433  334  447899999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHH------HHHHHHHhCCeEEEeccCC
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEE------GKSLAEEEGLFFMETSALD  160 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~Sa~~  160 (220)
                      |++++|+|++++-.++.....+..+.... -.-.|+++++||+|+..  .+..++      ...+++...++++.+|+.+
T Consensus        85 dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~t  162 (185)
T KOG0073|consen   85 DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVT  162 (185)
T ss_pred             CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccc
Confidence            99999999999988888777666643322 23368899999999874  333333      3445566788999999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREIYS  177 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~  177 (220)
                      |++..+-++|++..+..
T Consensus       163 ge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  163 GEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             cccHHHHHHHHHHHHHH
Confidence            99999999999998876

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.91  E-value=3.1e-23  Score=153.15  Aligned_cols=152  Identities=25%  Similarity=0.427  Sum_probs=116.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcC------CCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEF------DSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~------~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      +|+++|++|||||||+++|.+...      ...+.+|.+...  ..+.++  ...+.+||++|+..+...+..++..+++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999987533      223334444333  344454  3688999999999888888899999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-------hCCeEEEeccCCC
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-------EGLFFMETSALDS  161 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~  161 (220)
                      +++|+|+++..++.....++..+.... ....|+++++||+|+..  ....++...+...       .+++++++||+++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999888888888877755432 34689999999999865  3344554444433       2457999999999


Q ss_pred             CCHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIR  173 (220)
Q Consensus       162 ~~v~~l~~~l~~  173 (220)
                      .|++++++||.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PLN00023 GTP-binding protein; Provisional

Probab=99.91  E-value=4.3e-23  Score=164.02  Aligned_cols=144  Identities=24%  Similarity=0.499  Sum_probs=122.1

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-------------CeEEEEEEEecCCcc
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-------------GKEVKAQIWDTAGQE   74 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-------------~~~~~~~~~d~~g~~   74 (220)
                      ...+...+||+++|.+|||||||++++.+..|...+.+|++.......+.++             ++.+.+++||++|+.
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            4556667999999999999999999999999998889998877766666654             256889999999999


Q ss_pred             hhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCC------------CCCcEEEEEecCCCCCCC---C---
Q 027703           75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD------------TAVGRMLVGNKCDLDSIR---D---  136 (220)
Q Consensus        75 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~v~~k~Dl~~~~---~---  136 (220)
                      .+...+..++++++++|+|||++++.+|..+..|+..+.....            .+.|+++||||+||...+   .   
T Consensus        95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~  174 (334)
T PLN00023         95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG  174 (334)
T ss_pred             hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence            9999999999999999999999999999999999999876421            358999999999996542   2   


Q ss_pred             CCHHHHHHHHHHhCC
Q 027703          137 VSTEEGKSLAEEEGL  151 (220)
Q Consensus       137 ~~~~~~~~~~~~~~~  151 (220)
                      ...++++.++...++
T Consensus       175 ~~~e~a~~~A~~~g~  189 (334)
T PLN00023        175 NLVDAARQWVEKQGL  189 (334)
T ss_pred             ccHHHHHHHHHHcCC
Confidence            257889999988775

>cd04151 Arl1 Arl1 subfamily

Probab=99.91  E-value=3.6e-23  Score=151.57  Aligned_cols=151  Identities=23%  Similarity=0.346  Sum_probs=113.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      ||+++|++|||||||++++....+.. +.+|.+...  ..+.+  ..+.+.+||++|+..+...+..++..++++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998877653 445554433  23333  34788999999999888889999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHh-hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEEeccCCCCCHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTT-HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      .+++.++....+++..+.. ....+.|+++++||+|+....  ...+.......     .+.+++++||+++.|++++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9998888776666655432 223468999999999986432  23332222211     124689999999999999999


Q ss_pred             HHHH
Q 027703          170 VVIR  173 (220)
Q Consensus       170 ~l~~  173 (220)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.91  E-value=6.8e-23  Score=153.89  Aligned_cols=155  Identities=20%  Similarity=0.263  Sum_probs=119.8

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..++|+++|++|||||||++++.+..+.. +.+|.+.  ....+.+.  .+.+.+||++|+..+...+..++..++++++
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            34899999999999999999999886643 3344332  23334443  3788899999999888889999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH------------hCCeEEEeccC
Q 027703           93 VYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE------------EGLFFMETSAL  159 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~  159 (220)
                      |+|++++.++.....++..+... .....|+++++||+|+..  ..+.++.+..+.-            ....++.+|++
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~  168 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVV  168 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeecc
Confidence            99999998898888777775433 224689999999999864  4566665544421            23357889999


Q ss_pred             CCCCHHHHHHHHHHH
Q 027703          160 DSTNVEAAFEVVIRE  174 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~  174 (220)
                      ++.|++++++||.+.
T Consensus       169 ~~~g~~~~~~wl~~~  183 (184)
T smart00178      169 RRMGYGEGFKWLSQY  183 (184)
T ss_pred             cCCChHHHHHHHHhh
Confidence            999999999999754

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.91  E-value=4.7e-23  Score=150.83  Aligned_cols=151  Identities=23%  Similarity=0.385  Sum_probs=118.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      ||+++|++|||||||++++.+..+ ..+.++.+....  .+.+.  .+.+.+||++|+..+...+..++..++++++|+|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999973 344555554332  33333  4688999999999888888899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      +++..++.....++..+.... ....|+++++||+|+....  ..++......     ...++++++|++++.|+.++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999888877754432 3568999999999986533  3444333332     2346799999999999999999


Q ss_pred             HHHH
Q 027703          170 VVIR  173 (220)
Q Consensus       170 ~l~~  173 (220)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9874

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.91  E-value=1.5e-22  Score=147.52  Aligned_cols=152  Identities=26%  Similarity=0.441  Sum_probs=119.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .|+++|++|||||||+++|.+..+...+.++.+....  .+...+  +.+.+||++|+..+...+..++..++++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            3799999999999999999999999888888775543  233333  789999999999888888899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHhCCeEEEeccCCCCCHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-----EEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      +++..++.....++..+... .....|+++++||.|+....  ...+.....     ....+.++++|++++.|+.++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            99988888877777765432 22467999999999986532  222222222     12235789999999999999999


Q ss_pred             HHHH
Q 027703          170 VVIR  173 (220)
Q Consensus       170 ~l~~  173 (220)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.90  E-value=1.2e-24  Score=155.51  Aligned_cols=170  Identities=31%  Similarity=0.535  Sum_probs=157.1

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      -+..+|++|+|..++||||+|++++.+.|...+..|+++++....+.+++..+...+||+.|+..+......|+++|.+.
T Consensus        17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~   96 (246)
T KOG4252|consen   17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS   96 (246)
T ss_pred             hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence            35579999999999999999999999999999999999999988888888888999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      ++||+-+|..||+...+|+.++..... .+|.+++-||+||....+..-+++..+++.....++.+|.+...|+..+|.+
T Consensus        97 vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~Y  175 (246)
T KOG4252|consen   97 VLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAY  175 (246)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence            999999999999999999999887665 5999999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 027703          171 VIREIYSNISR  181 (220)
Q Consensus       171 l~~~~~~~~~~  181 (220)
                      |++...+.++.
T Consensus       176 LaeK~~q~~kq  186 (246)
T KOG4252|consen  176 LAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHH
Confidence            99988765443

>PTZ00099 rab6; Provisional

Probab=99.90  E-value=6.5e-22  Score=147.25  Aligned_cols=141  Identities=39%  Similarity=0.683  Sum_probs=125.8

Q ss_pred             CcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC
Q 027703           37 NEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC  116 (220)
Q Consensus        37 ~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~  116 (220)
                      ..|++.+.+|++.+.....+.+++..+.+.+|||+|+..+...+..+++.++++++|||++++.+|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45788889999888877778888889999999999999999899999999999999999999999999999999876655


Q ss_pred             CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          117 DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       117 ~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      ..+.|++++|||+|+...+.+..+++..++...+..++++||+++.|+.++|++|.+.+.+
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4568999999999997667788888888888888999999999999999999999988754

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.90  E-value=1.7e-21  Score=150.15  Aligned_cols=169  Identities=38%  Similarity=0.557  Sum_probs=137.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..+...+.+|.+...........+..+.+.+||++|+..+...+..++..+++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            39999999999999999999999999999999987666666665555578899999999999999999999999999999


Q ss_pred             EeCCC-cccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHh---CCeEEEec
Q 027703           94 YDITR-RSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR------------DVSTEEGKSLAEEE---GLFFMETS  157 (220)
Q Consensus        94 ~d~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~S  157 (220)
                      +|.++ ..+++....|...+........|+++++||.|+...+            .............+   ...++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99999 4456666778888877765668999999999997653            33333333333333   33488899


Q ss_pred             cC--CCCCHHHHHHHHHHHHHHHhhhh
Q 027703          158 AL--DSTNVEAAFEVVIREIYSNISRK  182 (220)
Q Consensus       158 a~--~~~~v~~l~~~l~~~~~~~~~~~  182 (220)
                      +.  .+.++.+++..+.+.+.+.....
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~  191 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEKL  191 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence            99  99999999999999997644433

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.89  E-value=1.6e-21  Score=141.72  Aligned_cols=158  Identities=35%  Similarity=0.520  Sum_probs=124.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      ++||+++|.+|||||||++++.+..++..+.++.+.......+..++..+.+.+||++|+..+...+..+..+++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999999998878777877777666677777668899999999988888888888899999999


Q ss_pred             EeCCCc-ccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           94 YDITRR-SSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        94 ~d~~~~-~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|.... .++.... .|...+........|+++++||.|+.... ........+.......++++|+.++.|+.+++++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            998776 6666654 45555544443368999999999986533 23333334444445679999999999999999986


Q ss_pred             H
Q 027703          172 I  172 (220)
Q Consensus       172 ~  172 (220)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            4

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01898 Obg Obg subfamily

Probab=99.89  E-value=3.8e-22  Score=147.63  Aligned_cols=157  Identities=21%  Similarity=0.148  Sum_probs=110.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----hhhhhHH---hhcCCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----FRAVTSA---YYRGAV   88 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----~~~~~~~---~~~~~~   88 (220)
                      .|+++|++|||||||+++|.+........+..+..+..+.+.+.+. ..+.+|||||+..    .......   .+..++
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            5899999999999999999986543222222233444444544432 4788999999632    1112222   334699


Q ss_pred             EEEEEEeCCCc-ccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-hCCeEEEeccCCCCCH
Q 027703           89 GALVVYDITRR-SSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNV  164 (220)
Q Consensus        89 ~~i~v~d~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v  164 (220)
                      ++++|+|+++. .+++.+..|...+.....  ...|+++++||.|+...... .+....+... ...+++.+|++++.++
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 788888888887765432  35788999999998653332 2333344444 3678999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          165 EAAFEVVIRE  174 (220)
Q Consensus       165 ~~l~~~l~~~  174 (220)
                      .++++++.++
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.89  E-value=8.8e-22  Score=145.45  Aligned_cols=155  Identities=21%  Similarity=0.230  Sum_probs=106.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh---------hhhHHhhcC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR---------AVTSAYYRG   86 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~~~   86 (220)
                      +|+++|++|||||||+++|.+..+.....+..+.....+.+..  ..+.+.+|||||+....         .........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            7999999999999999999998775432222222233333333  34788999999973210         011111233


Q ss_pred             CcEEEEEEeCCCcccH--HHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703           87 AVGALVVYDITRRSSF--DSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV  164 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (220)
                      ++++++|+|+++..++  .....|+..+.... ...|+++++||.|+...+..  .+...+......+++++||+++.|+
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi  156 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDL--SEIEEEEELEGEEVLKISTLTEEGV  156 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhH--HHHHHhhhhccCceEEEEecccCCH
Confidence            6889999999886553  55556777665433 36899999999998654332  2244555556778999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          165 EAAFEVVIREI  175 (220)
Q Consensus       165 ~~l~~~l~~~~  175 (220)
                      +++++++.+.+
T Consensus       157 ~~l~~~l~~~~  167 (168)
T cd01897         157 DEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.89  E-value=2.7e-24  Score=166.00  Aligned_cols=176  Identities=22%  Similarity=0.268  Sum_probs=115.5

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc--hhhhhhHHhhcCCcEEEEEE
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE--RFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~--~~~~~~~~~~~~~~~~i~v~   94 (220)
                      ++|+||||||||||+++|.+.           ..+..|.+.++|+.+.    +.+...  +......+.. ....-+.|+
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~-----------l~p~~G~V~l~g~~i~----~~~~kelAk~ia~vpQ~~-~~~~~~tV~   94 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGL-----------LKPKSGEVLLDGKDIA----SLSPKELAKKLAYVPQSP-SAPFGLTVY   94 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCCchh----hcCHHHHhhhEEEeccCC-CCCCCcEEe
Confidence            789999999999999999998           4445677777775432    111100  0000000000 011112222


Q ss_pred             eCC--------------CcccHHHHHHHHHHH--HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--e
Q 027703           95 DIT--------------RRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--T  156 (220)
Q Consensus        95 d~~--------------~~~~~~~~~~~~~~l--~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~  156 (220)
                      |.-              .....+.+...+..+  ..........++.|.++.        .-.|+++++++++.++|  |
T Consensus        95 d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQr--------v~iArALaQ~~~iLLLDEPT  166 (258)
T COG1120          95 ELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQR--------VLIARALAQETPILLLDEPT  166 (258)
T ss_pred             ehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHH--------HHHHHHHhcCCCEEEeCCCc
Confidence            221              111111222222221  222223333333444433        33477999999999999  9


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          157 SALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      |.+|..+.-++++.+.++..+ +.+++++.||++.|.+|||++++|++|+++.+|+|+++.
T Consensus       167 s~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl  227 (258)
T COG1120         167 SHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL  227 (258)
T ss_pred             cccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence            999999999999999999966 899999999999999999999999999999999998864

>cd01878 HflX HflX subfamily

Probab=99.89  E-value=4e-22  Score=152.07  Aligned_cols=158  Identities=17%  Similarity=0.102  Sum_probs=114.6

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh--hh------hHH
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR--AV------TSA   82 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~--~~------~~~   82 (220)
                      +++.++|+|+|++|||||||++++.+..+.....+..+.++....+.+.+. ..+.+||++|.....  ..      ...
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~  116 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLE  116 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence            466789999999999999999999998755443333334444555555443 368889999973210  00      112


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC
Q 027703           83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST  162 (220)
Q Consensus        83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (220)
                      .+..+|++++|+|++++.++.....|...+........|+++++||.|+.......     ........+++.+|++++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence            35689999999999998888887777666655444568999999999986433211     3344556789999999999


Q ss_pred             CHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIRE  174 (220)
Q Consensus       163 ~v~~l~~~l~~~  174 (220)
                      |+.+++++|.+.
T Consensus       192 gi~~l~~~L~~~  203 (204)
T cd01878         192 GLDELLEAIEEL  203 (204)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04155 Arl3 Arl3 subfamily

Probab=99.89  E-value=7.5e-22  Score=146.56  Aligned_cols=156  Identities=21%  Similarity=0.310  Sum_probs=114.8

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      ....++++++|++|||||||+++|.+..+.. ..++.+...  ..+.+.+  ..+.+||++|+..+...+..+++.++++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            3447999999999999999999999986643 344444322  3444444  5788999999988877888888999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC-----CeEEEeccCCCCCH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG-----LFFMETSALDSTNV  164 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v  164 (220)
                      ++|+|+++..++.....++..+... .....|+++++||.|+....  ..++......-..     ..++++||+++.|+
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi  163 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEGL  163 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCCH
Confidence            9999999988888877776665432 23468999999999975422  2232222221111     24678999999999


Q ss_pred             HHHHHHHHH
Q 027703          165 EAAFEVVIR  173 (220)
Q Consensus       165 ~~l~~~l~~  173 (220)
                      +++++||.+
T Consensus       164 ~~~~~~l~~  172 (173)
T cd04155         164 QEGMNWVCK  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.8e-21  Score=157.87  Aligned_cols=163  Identities=18%  Similarity=0.106  Sum_probs=122.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch-------hhhhhHHhhcC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-------FRAVTSAYYRG   86 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~   86 (220)
                      ...|+++|.||||||||+++|++........+..+..+..+.+.+.+ ...+.+||+||...       ....+..++..
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            35699999999999999999998764433334445666667666632 24678999999642       12233345567


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV  164 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (220)
                      ++++++|+|+++..+++.+..|..++..+..  ...|+++++||+|+........++...+....+.+++.+||+++.|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            8999999999988789999889888876543  35799999999998754433333444445556688999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027703          165 EAAFEVVIREIYS  177 (220)
Q Consensus       165 ~~l~~~l~~~~~~  177 (220)
                      ++++++|.+.+.+
T Consensus       317 ~eL~~~L~~~l~~  329 (335)
T PRK12299        317 DELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988765

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=2.9e-24  Score=167.08  Aligned_cols=177  Identities=19%  Similarity=0.215  Sum_probs=129.0

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCC--cchhh-------------hhhH
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG--QERFR-------------AVTS   81 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g--~~~~~-------------~~~~   81 (220)
                      ++|+|-+|||||||++++...           +++..+.+.+++.++.    .+..  ...++             .-+.
T Consensus        57 fViMGLSGSGKSTLvR~~NrL-----------iept~G~ilv~g~di~----~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr  121 (386)
T COG4175          57 FVIMGLSGSGKSTLVRLLNRL-----------IEPTRGEILVDGKDIA----KLSAAELRELRRKKISMVFQSFALLPHR  121 (386)
T ss_pred             EEEEecCCCCHHHHHHHHhcc-----------CCCCCceEEECCcchh----cCCHHHHHHHHhhhhhhhhhhhccccch
Confidence            679999999999999999998           5556778878775431    1110  00000             0112


Q ss_pred             HhhcCCcEEEEEEeCCCcccHHHHHHHHHH--HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703           82 AYYRGAVGALVVYDITRRSSFDSVKRWLEE--LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS  157 (220)
Q Consensus        82 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S  157 (220)
                      ..+.++..-+-+--+...+..+...+|++.  +..+..+.+.-++.|.++.        +.-|++++.++++.++|  .|
T Consensus       122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQR--------VGLARAla~~~~IlLMDEaFS  193 (386)
T COG4175         122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQR--------VGLARALANDPDILLMDEAFS  193 (386)
T ss_pred             hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHH--------HHHHHHHccCCCEEEecCchh
Confidence            223333322333344445566667777776  3344344444455555555        45566999999999999  99


Q ss_pred             cCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          158 ALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       158 a~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      |+||--..++-+.++++..+ ++|++|+|||+++|.++.|||++|+||+|+..|+|+||.
T Consensus       194 ALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl  253 (386)
T COG4175         194 ALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL  253 (386)
T ss_pred             hcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHH
Confidence            99999999999999999987 899999999999999999999999999999999999875

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=4.4e-24  Score=165.86  Aligned_cols=176  Identities=18%  Similarity=0.254  Sum_probs=119.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCc--chhhhhhHHhhcCCc------
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ--ERFRAVTSAYYRGAV------   88 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~--~~~~~~~~~~~~~~~------   88 (220)
                      ++|+|.+|+|||||++++.+.+-|           ..|.+.++|.++.    ...+.  ...+...-..+++.+      
T Consensus        35 ~GIIG~SGAGKSTLiR~iN~Le~P-----------tsG~v~v~G~di~----~l~~~~Lr~~R~~IGMIFQhFnLLssrT   99 (339)
T COG1135          35 FGIIGYSGAGKSTLLRLINLLERP-----------TSGSVFVDGQDLT----ALSEAELRQLRQKIGMIFQHFNLLSSRT   99 (339)
T ss_pred             EEEEcCCCCcHHHHHHHHhccCCC-----------CCceEEEcCEecc----cCChHHHHHHHhhccEEeccccccccch
Confidence            799999999999999999999655           4566767774432    12211  011110000111111      


Q ss_pred             -----EEEE-EEeCCCcccHHHHHHHHHHH--HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703           89 -----GALV-VYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA  158 (220)
Q Consensus        89 -----~~i~-v~d~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa  158 (220)
                           ++-+ +-.....+...+..++++.+  .......+.-++.|.|+.+        ..||+++.+|++.+.|  |||
T Consensus       100 V~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRV--------aIARALa~~P~iLL~DEaTSA  171 (339)
T COG1135         100 VFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRV--------AIARALANNPKILLCDEATSA  171 (339)
T ss_pred             HHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHH--------HHHHHHhcCCCEEEecCcccc
Confidence                 0000 11111222333344444432  2222233444666666664        4566999999999999  999


Q ss_pred             CCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          159 LDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      +||...+.+++.|.++..+ +.|++++||.++.++.+|||++||.+|++++.|+..++
T Consensus       172 LDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v  229 (339)
T COG1135         172 LDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV  229 (339)
T ss_pred             CChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence            9999999999999999988 99999999999999999999999999999999998775

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.7e-22  Score=144.18  Aligned_cols=158  Identities=21%  Similarity=0.346  Sum_probs=129.8

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..++|+++|-.+|||||+++.+...++... .||++.......+    +++++.+||..|+.+.+..|..|+++.+++||
T Consensus        16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf   90 (181)
T KOG0070|consen   16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF   90 (181)
T ss_pred             ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence            358999999999999999999988887766 8888876665444    36899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEEeccCCCCCHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFMETSALDSTNVEA  166 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~  166 (220)
                      |.|++|++.+...++.+..+....+ ...|+++.+||+|++.+.  +..+..+...-     .++.+-.++|.+|.|+.+
T Consensus        91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al--s~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e  168 (181)
T KOG0070|consen   91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL--SAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE  168 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC--CHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence            9999999999998877666554443 678999999999998744  44444343333     344666699999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          167 AFEVVIREIYS  177 (220)
Q Consensus       167 l~~~l~~~~~~  177 (220)
                      .++|+.+.+..
T Consensus       169 gl~wl~~~~~~  179 (181)
T KOG0070|consen  169 GLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHhc
Confidence            99999987754

>cd01890 LepA LepA subfamily

Probab=99.88  E-value=8.1e-21  Score=141.75  Aligned_cols=154  Identities=23%  Similarity=0.305  Sum_probs=109.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc-------CCCCCccc------ceeeeeEEE--EEe---CCeEEEEEEEecCCcchhh
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE-------FDSNSKAT------IGVEFQTQV--VDI---DGKEVKAQIWDTAGQERFR   77 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~-------~~~~~~~t------~~~~~~~~~--i~~---~~~~~~~~~~d~~g~~~~~   77 (220)
                      +|+++|.+|+|||||++++.+..       +...+.++      .+.......  +.+   ++..+.+.+|||+|+..+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            58999999999999999998742       11111111      112222222  222   5667889999999999988


Q ss_pred             hhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC---eEE
Q 027703           78 AVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL---FFM  154 (220)
Q Consensus        78 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~---~~~  154 (220)
                      ..+..+++.+|++++|+|.++..++.....|....    ....|+++++||.|+...+  ..+....+....++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            88888999999999999999877776665554322    2357899999999985422  22223344454454   488


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 027703          155 ETSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       155 ~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                      ++||+++.|++++++++.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04171 SelB SelB subfamily

Probab=99.88  E-value=3.2e-21  Score=141.67  Aligned_cols=154  Identities=19%  Similarity=0.156  Sum_probs=103.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC---cCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN---EFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~---~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      -|+++|++|||||||+++|.+.   .++....++.+.......+.+.+ ...+.+|||||+..+......++..+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            5899999999999999999864   34433334444444444455542 3578899999998876666667889999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHH---hCCeEEEeccCCCCCHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD--VSTEEGKSLAEE---EGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l  167 (220)
                      |+|+++....+. ...+..+...  ...|+++++||.|+.....  ....+.......   ...+++++|++++.|++++
T Consensus        81 V~d~~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  157 (164)
T cd04171          81 VVAADEGIMPQT-REHLEILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL  157 (164)
T ss_pred             EEECCCCccHhH-HHHHHHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence            999976321111 1222222221  1248899999999864321  112333344444   3578999999999999999


Q ss_pred             HHHHHH
Q 027703          168 FEVVIR  173 (220)
Q Consensus       168 ~~~l~~  173 (220)
                      ++.+.+
T Consensus       158 ~~~l~~  163 (164)
T cd04171         158 KEYLDE  163 (164)
T ss_pred             HHHHhh
Confidence            998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.87  E-value=2.2e-22  Score=152.48  Aligned_cols=177  Identities=18%  Similarity=0.181  Sum_probs=118.8

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc--hh-hhhhH--HhhcCCcE--
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE--RF-RAVTS--AYYRGAVG--   89 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~--~~-~~~~~--~~~~~~~~--   89 (220)
                      ++++||+||||||++++|...           +++..+.+.++++.+.    +.+...  +. ....+  ..+.+..+  
T Consensus        30 ~vliGpSGsGKTTtLkMINrL-----------iept~G~I~i~g~~i~----~~d~~~LRr~IGYviQqigLFPh~Tv~e   94 (309)
T COG1125          30 LVLIGPSGSGKTTTLKMINRL-----------IEPTSGEILIDGEDIS----DLDPVELRRKIGYVIQQIGLFPHLTVAE   94 (309)
T ss_pred             EEEECCCCCcHHHHHHHHhcc-----------cCCCCceEEECCeecc----cCCHHHHHHhhhhhhhhcccCCCccHHH
Confidence            689999999999999999999           5567788888886542    111100  00 00000  01111110  


Q ss_pred             -EEEEEeC--CC-cccHHHHHHHHHHHH----hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccC
Q 027703           90 -ALVVYDI--TR-RSSFDSVKRWLEELT----THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSAL  159 (220)
Q Consensus        90 -~i~v~d~--~~-~~~~~~~~~~~~~l~----~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~  159 (220)
                       +.+|-..  .+ ...-..+.+++..+.    .+....+        ..|+...++.+..+++++.+|++.++|  .||+
T Consensus        95 NIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP--------~eLSGGQQQRVGv~RALAadP~ilLMDEPFgAL  166 (309)
T COG1125          95 NIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP--------HELSGGQQQRVGVARALAADPPILLMDEPFGAL  166 (309)
T ss_pred             HHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc--------hhcCcchhhHHHHHHHHhcCCCeEeecCCcccc
Confidence             1111111  11 112222333332221    1112222        234444455566788999999999999  9999


Q ss_pred             CCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          160 DSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      |+.+..++-+.+.++..+ ++|++|+|||+++|..+||||.+|++|+++..++|+++.
T Consensus       167 DpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il  224 (309)
T COG1125         167 DPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL  224 (309)
T ss_pred             ChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence            999999999999999987 999999999999999999999999999999999998864

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.86  E-value=6.3e-21  Score=137.17  Aligned_cols=134  Identities=25%  Similarity=0.250  Sum_probs=97.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc-----hhhhhhHHhhcCCcEE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE-----RFRAVTSAYYRGAVGA   90 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~-----~~~~~~~~~~~~~~~~   90 (220)
                      ||+++|++|||||||++++.+..+.  +.+|.       .+.+..     .+||++|..     .+.... ..++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~-------~~~~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQ-------AVEYND-----GAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccce-------eEEEcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            8999999999999999999988652  22222       122222     579999973     122222 347899999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVEAAFE  169 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~  169 (220)
                      ++|+|++++.++... .|...+      ..|+++++||.|+.. +....+++..+++..+. +++++||+++.|++++|+
T Consensus        67 ilv~d~~~~~s~~~~-~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFPP-GFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCCh-hHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            999999999887652 333221      238899999999864 34456667777777665 789999999999999999


Q ss_pred             HHH
Q 027703          170 VVI  172 (220)
Q Consensus       170 ~l~  172 (220)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.86  E-value=1e-22  Score=153.63  Aligned_cols=176  Identities=18%  Similarity=0.237  Sum_probs=122.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCC-------------eEEEEEEEecCCcchhhhhhHH
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG-------------KEVKAQIWDTAGQERFRAVTSA   82 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~-------------~~~~~~~~d~~g~~~~~~~~~~   82 (220)
                      .++|+|++|||||||.+.|.|..-+..+           .+.++|             +.+++.|-|--+..........
T Consensus        35 ~lgivGeSGsGKSTL~r~l~Gl~~p~~G-----------~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~  103 (252)
T COG1124          35 TLGIVGESGSGKSTLARLLAGLEKPSSG-----------SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGR  103 (252)
T ss_pred             EEEEEcCCCCCHHHHHHHHhcccCCCCc-----------eEEECCcccCccccchhhccceeEEecCCccccCcchhHHH
Confidence            5899999999999999999999655444           444433             3456666666554322222222


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHh---hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703           83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTT---HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS  157 (220)
Q Consensus        83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S  157 (220)
                      .+..+-..     -.-....+.+.+++..+..   .....+.-++.|.++.++        .++++..+|++.++|  +|
T Consensus       104 ~l~Epl~~-----~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRia--------IARAL~~~PklLIlDEptS  170 (252)
T COG1124         104 ILSEPLRP-----HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIA--------IARALIPEPKLLILDEPTS  170 (252)
T ss_pred             HHhhhhcc-----CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHH--------HHHHhccCCCEEEecCchh
Confidence            22222111     1111222334445444211   111222335555555543        466999999999999  99


Q ss_pred             cCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          158 ALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       158 a~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ++|.....++++.+.++..+ +.+.+|+|||+..+..+|||++||++|++++.+..+++
T Consensus       171 aLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l  229 (252)
T COG1124         171 ALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL  229 (252)
T ss_pred             hhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhh
Confidence            99999999999999999887 89999999999999999999999999999999998775

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.5e-22  Score=157.19  Aligned_cols=175  Identities=19%  Similarity=0.182  Sum_probs=116.6

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe-------------EEEEEEEecCCcchhhhhhHHh
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK-------------EVKAQIWDTAGQERFRAVTSAY   83 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~-------------~~~~~~~d~~g~~~~~~~~~~~   83 (220)
                      ++++|||||||||||+.|.|.+.++.           +.|.+++.             ++-+.|-+..-.+ ......+.
T Consensus        31 vaLlGpSGaGKsTlLRiIAGLe~p~~-----------G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~-HmtVa~NI   98 (345)
T COG1118          31 VALLGPSGAGKSTLLRIIAGLETPDA-----------GRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP-HMTVADNI   98 (345)
T ss_pred             EEEECCCCCcHHHHHHHHhCcCCCCC-----------ceEEECCEeccchhccchhhcceeEEEechhhcc-cchHHhhh
Confidence            89999999999999999999976654           44444443             2333333333111 11111111


Q ss_pred             hcCCcEEEEEE--eCCCcccHHHHHHHHHHHHh--hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703           84 YRGAVGALVVY--DITRRSSFDSVKRWLEELTT--HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS  157 (220)
Q Consensus        84 ~~~~~~~i~v~--d~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S  157 (220)
                      ...    +-+-  ..+....-..+.+++..+..  .....+.-++.|.++        .+.-|++++-+|++.++|  .+
T Consensus        99 AFG----l~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQ--------RVALARALA~eP~vLLLDEPf~  166 (345)
T COG1118          99 AFG----LKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQ--------RVALARALAVEPKVLLLDEPFG  166 (345)
T ss_pred             hhc----ccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHH--------HHHHHHHhhcCCCeEeecCCch
Confidence            111    1111  01111223333344333221  111222223333333        344577999999999999  99


Q ss_pred             cCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          158 ALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       158 a~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ++|..-..++-.|+.+.... +.+.+++|||++++.+.||||++|++|+|...|+++|+
T Consensus       167 ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev  225 (345)
T COG1118         167 ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV  225 (345)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence            99999999999999999988 99999999999999999999999999999999999886

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.86  E-value=6.6e-20  Score=131.92  Aligned_cols=153  Identities=48%  Similarity=0.781  Sum_probs=119.4

Q ss_pred             EECCCCCcHHHHHHHHhhCcC-CCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCC
Q 027703           19 LIGDSAVGKSNLLSRFARNEF-DSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDIT   97 (220)
Q Consensus        19 ilG~~g~GKSTll~~l~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~   97 (220)
                      ++|++|+|||||++++.+... +....++. .+.........+....+.+||++|..............++++++|+|.+
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999999877 45555555 5555666666666788999999998877777778889999999999999


Q ss_pred             CcccHHHHHHHHHH-HHhhCCCCCcEEEEEecCCCCCCCCCCHHH-HHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           98 RRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDSIRDVSTEE-GKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        98 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      ++.++.....|+.. .........|+++++||.|+.......... ..........+++.+|+.++.++.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            98888888776322 333344568999999999986544333322 4455556678999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.85  E-value=2.8e-20  Score=152.08  Aligned_cols=156  Identities=21%  Similarity=0.177  Sum_probs=112.1

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch---------hhhhhH
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER---------FRAVTS   81 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~---------~~~~~~   81 (220)
                      +...++|+++|.+|||||||+|+|++..+.....+..+.++....+.+.+. ..+.+|||+|...         +... .
T Consensus       186 ~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-l  263 (351)
T TIGR03156       186 RADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-L  263 (351)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-H
Confidence            345689999999999999999999998754444444445556667777432 4788999999721         1111 2


Q ss_pred             HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCC
Q 027703           82 AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDS  161 (220)
Q Consensus        82 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (220)
                      ..+.++|.+++|+|++++.++..+..|...+......+.|+++++||+|+....     +.... .....+++.+||+++
T Consensus       264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg  337 (351)
T TIGR03156       264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTG  337 (351)
T ss_pred             HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCC
Confidence            246789999999999998888777666555555444468999999999986422     11111 122345788999999


Q ss_pred             CCHHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIRE  174 (220)
Q Consensus       162 ~~v~~l~~~l~~~  174 (220)
                      .|+++++++|.+.
T Consensus       338 ~GI~eL~~~I~~~  350 (351)
T TIGR03156       338 EGLDLLLEAIAER  350 (351)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.85  E-value=2.9e-21  Score=133.80  Aligned_cols=157  Identities=23%  Similarity=0.415  Sum_probs=127.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+.+.++|..+||||||.+.+..+.+...-.||.+.+...    ++...+.+.+||.+|++.++..|..|++..++++++
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            4789999999999999999999988888888888876654    555778999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHH-----HHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEE-----GKSLAEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +|+.+++.+...+..+..+..... ..+|.+++|||.|++.+  ++..+     ...-+++..+.+|.+|+++..|++.+
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~~  173 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT  173 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence            999999888887776666554432 56899999999998753  23222     12223334557888999999999999


Q ss_pred             HHHHHHHHH
Q 027703          168 FEVVIREIY  176 (220)
Q Consensus       168 ~~~l~~~~~  176 (220)
                      .+||.+.-.
T Consensus       174 ~~Wli~hsk  182 (186)
T KOG0075|consen  174 LDWLIEHSK  182 (186)
T ss_pred             HHHHHHHhh
Confidence            999987653

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.85  E-value=5.8e-20  Score=148.94  Aligned_cols=160  Identities=20%  Similarity=0.136  Sum_probs=115.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch-------hhhhhHHhhcC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-------FRAVTSAYYRG   86 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~   86 (220)
                      ...|+++|.++||||||+++|.+........+..+..+..+.+.+++ ...+.+||+||...       ....+...+..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            36799999999999999999998764333333334555666666654 35778999999742       12222334456


Q ss_pred             CcEEEEEEeCCCc---ccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCC
Q 027703           87 AVGALVVYDITRR---SSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDS  161 (220)
Q Consensus        87 ~~~~i~v~d~~~~---~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (220)
                      ++++++|+|+++.   ..++.+..|..++..+..  ...|+++++||+|+..... ..+....+....+..++.+||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999876   577788778777765532  3579999999999865322 222344455555778999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIREI  175 (220)
Q Consensus       162 ~~v~~l~~~l~~~~  175 (220)
                      .+++++++++.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.85  E-value=6.3e-20  Score=135.40  Aligned_cols=157  Identities=15%  Similarity=0.132  Sum_probs=107.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      .|+++|++|||||||+++|.+..+.....++.+.......+... +....+.+|||+|+..+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999988776544444333333333333 13467889999999888777888889999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHH-HHHHHH------HhCCeEEEeccCCCCCHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEE-GKSLAE------EEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~-~~~~~~------~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      |+++....... ..+..+..   ...|+++++||+|+.......... ...+..      ...++++++|++++.|+.++
T Consensus        82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            99875432222 22222322   357899999999986422111111 111111      12357899999999999999


Q ss_pred             HHHHHHHHH
Q 027703          168 FEVVIREIY  176 (220)
Q Consensus       168 ~~~l~~~~~  176 (220)
                      +++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999987654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.85  E-value=1.9e-20  Score=139.20  Aligned_cols=155  Identities=25%  Similarity=0.218  Sum_probs=107.3

Q ss_pred             EECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh----hh---hhHHhhcCCcEEE
Q 027703           19 LIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF----RA---VTSAYYRGAVGAL   91 (220)
Q Consensus        19 ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~----~~---~~~~~~~~~~~~i   91 (220)
                      ++|++|||||||+++|.+..+.....+..+..+..+.+.+.+ ...+.+||+||....    ..   .....++.+++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999999875222222223444445555551 356789999996321    11   2234567899999


Q ss_pred             EEEeCCCc------ccHHHHHHHHHHHHhhCC-------CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEecc
Q 027703           92 VVYDITRR------SSFDSVKRWLEELTTHCD-------TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSA  158 (220)
Q Consensus        92 ~v~d~~~~------~~~~~~~~~~~~l~~~~~-------~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (220)
                      +|+|+.+.      .++.....|...+.....       ...|+++++||.|+.....................++.+|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999887      467777777776654332       36899999999998654433332223344445678999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027703          159 LDSTNVEAAFEVVIRE  174 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~  174 (220)
                      +++.|++++++++.+.
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999988764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.85  E-value=8.6e-23  Score=164.27  Aligned_cols=178  Identities=20%  Similarity=0.203  Sum_probs=117.0

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEE----------EEEEEecCCcchhhhhhHHhhcC
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEV----------KAQIWDTAGQERFRAVTSAYYRG   86 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~----------~~~~~d~~g~~~~~~~~~~~~~~   86 (220)
                      ++++||+||||||+|++|.|.+.+           +.+.+.++|+.+          .+.|-+..-.+. .....+.   
T Consensus        34 ~~lLGPSGcGKTTlLR~IAGfe~p-----------~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPH-ltV~~NV---   98 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAGFEQP-----------SSGEILLDGEDITDVPPEKRPIGMVFQSYALFPH-MTVEENV---   98 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCChhhcccceeecCcccCCC-CcHHHHh---
Confidence            789999999999999999999655           456666666543          222222221111 1111111   


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHH--HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCC
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDST  162 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~  162 (220)
                      +-++-........+.-..+.++++.+  .......+.-++.|.++.        +.-|++++.+|++.++|  .|++|..
T Consensus        99 afGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQR--------VALARAL~~~P~vLLLDEPlSaLD~k  170 (352)
T COG3842          99 AFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQR--------VALARALVPEPKVLLLDEPLSALDAK  170 (352)
T ss_pred             hhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHH--------HHHHHHhhcCcchhhhcCcccchhHH
Confidence            00100000011111222333333321  222222232334444443        44577999999999999  9999999


Q ss_pred             CHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccccc
Q 027703          163 NVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSC  217 (220)
Q Consensus       163 ~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~~  217 (220)
                      -..++..++.++..+ +.|.+++|||..+|..++|||+||++|+|...|+|+++-.
T Consensus       171 LR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~  226 (352)
T COG3842         171 LREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE  226 (352)
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence            999999999999987 8999999999999999999999999999999999998743

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.85  E-value=1.3e-22  Score=153.13  Aligned_cols=185  Identities=16%  Similarity=0.133  Sum_probs=120.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEE---------EEEEecCC---cchhhhhhHHh
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVK---------AQIWDTAG---QERFRAVTSAY   83 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~---------~~~~d~~g---~~~~~~~~~~~   83 (220)
                      -++++||||+|||||+|.|+|..           .++.+.+.+.+..+.         .-+--|.+   ..+......+.
T Consensus        32 i~~LIGPNGAGKTTlfNlitG~~-----------~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv  100 (250)
T COG0411          32 IVGLIGPNGAGKTTLFNLITGFY-----------KPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENV  100 (250)
T ss_pred             EEEEECCCCCCceeeeeeecccc-----------cCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHH
Confidence            47999999999999999999994           445566666664321         00111111   11111111221


Q ss_pred             hcCCc---EEEEEEe--C---CCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE
Q 027703           84 YRGAV---GALVVYD--I---TRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME  155 (220)
Q Consensus        84 ~~~~~---~~i~v~d--~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (220)
                      .-.+.   .+...+.  .   ...+..+....|++.+......+.+.      -+|+...+...|.|++++.+|++.++|
T Consensus       101 ~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A------~~LsyG~qR~LEIArALa~~P~lLLLD  174 (250)
T COG0411         101 AVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA------GNLSYGQQRRLEIARALATQPKLLLLD  174 (250)
T ss_pred             HHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh------hcCChhHhHHHHHHHHHhcCCCEEEec
Confidence            11111   0111111  1   11223333444444432211111111      334555566778899999999999999


Q ss_pred             --eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccccc
Q 027703          156 --TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSC  217 (220)
Q Consensus       156 --~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~~  217 (220)
                        .+++++....++.+.|.++..+ +.++++++||+..++.+||||+||..|+++.+|+|+++..
T Consensus       175 EPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~  239 (250)
T COG0411         175 EPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN  239 (250)
T ss_pred             CccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence              9999999999999999988885 6999999999999999999999999999999999998753

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=3.1e-22  Score=154.20  Aligned_cols=176  Identities=18%  Similarity=0.212  Sum_probs=117.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--EEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--QIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .++++|+||||||||++.+.+...+..           +.+.+++.....  .++..      ....-..+++++..++.
T Consensus        32 ~~~i~G~nGsGKSTL~~~l~GLl~p~~-----------G~v~~~g~~~~~~~~~~~~------~~~vG~VfQnpd~q~~~   94 (235)
T COG1122          32 RVLLIGPNGSGKSTLLKLLNGLLKPTS-----------GEVLVDGLDTSSEKSLLEL------RQKVGLVFQNPDDQLFG   94 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHcCcCcCCC-----------CEEEECCeeccchhhHHHh------hcceEEEEECccccccc
Confidence            589999999999999999999966644           444444432110  00000      00000111122211110


Q ss_pred             --------EeC-CCcccHHHH----HHHHHH--HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--e
Q 027703           94 --------YDI-TRRSSFDSV----KRWLEE--LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--T  156 (220)
Q Consensus        94 --------~d~-~~~~~~~~~----~~~~~~--l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~  156 (220)
                              |-. +...+.+++    .+.+..  +......++.-++.|.|+.++.+.        .++.+|++.++|  |
T Consensus        95 ~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~--------vLa~~P~iliLDEPt  166 (235)
T COG1122          95 PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAG--------VLAMGPEILLLDEPT  166 (235)
T ss_pred             CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhH--------HHHcCCCEEEEcCCC
Confidence                    000 111122222    222222  222333445556778887766544        999999999999  9


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          157 SALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      |.+|+.+..++++.+.++..+ +.+++++|||++.+..+|||+++|++|+++.+|+++++.
T Consensus       167 a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~  227 (235)
T COG1122         167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF  227 (235)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHh
Confidence            999999999999999999988 699999999999999999999999999999999987754

>PRK04213 GTP-binding protein; Provisional

Probab=99.85  E-value=8.9e-21  Score=144.28  Aligned_cols=153  Identities=20%  Similarity=0.231  Sum_probs=100.1

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCc-----------chhhhhh
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ-----------ERFRAVT   80 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~-----------~~~~~~~   80 (220)
                      ...++|+++|++|||||||+++|.+..+.....++.+...  ..+...    .+.+|||+|.           ..+...+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKP--NHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCc--eEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            3458999999999999999999999887665555544332  223222    5789999993           3444444


Q ss_pred             HHhhc----CCcEEEEEEeCCCcccH-HH---------HHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 027703           81 SAYYR----GAVGALVVYDITRRSSF-DS---------VKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA  146 (220)
Q Consensus        81 ~~~~~----~~~~~i~v~d~~~~~~~-~~---------~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~  146 (220)
                      ..++.    .++++++|+|.++.... ..         -.+++..+.   ....|+++++||+|+....   .+.+..+.
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~  154 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA  154 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence            44443    34677788887543221 00         011122222   2358999999999986433   23344455


Q ss_pred             HHhCC---------eEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          147 EEEGL---------FFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       147 ~~~~~---------~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      ...++         +++.+||+++ |+++++++|.+.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            54444         4789999999 999999999887654

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.85  E-value=7.3e-20  Score=133.64  Aligned_cols=148  Identities=18%  Similarity=0.177  Sum_probs=108.7

Q ss_pred             EECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh------hhHHhh--cCCcEE
Q 027703           19 LIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA------VTSAYY--RGAVGA   90 (220)
Q Consensus        19 ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~~~~~~   90 (220)
                      ++|.+|+|||||++++.+..+.....++.+.......+.+++  ..+.+|||||+..+..      ....++  ..++++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999999875555555555555566666665  4788999999865443      234445  489999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      ++|+|.++.....   .++..+..   ...|+++++||.|+.....+... ...+....+++++++|+.++.|+.+++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999998754322   33333332   25799999999998754433332 34666667889999999999999999999


Q ss_pred             HHHHH
Q 027703          171 VIREI  175 (220)
Q Consensus       171 l~~~~  175 (220)
                      +.+.+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            98764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=5.5e-22  Score=150.75  Aligned_cols=164  Identities=19%  Similarity=0.192  Sum_probs=115.6

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE-------EEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE-------VKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~-------~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      ++|+||+|||||||+|.|.|..-+.           .+.+.+++..       +-+.|-     .....-|.....+...
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~p~-----------~G~V~~~g~~v~~p~~~~~~vFQ-----~~~LlPW~Tv~~NV~l   95 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEKPT-----------SGEVLLDGRPVTGPGPDIGYVFQ-----EDALLPWLTVLDNVAL   95 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCC-----------CceEEECCcccCCCCCCEEEEec-----cCcccchhhHHhhhee
Confidence            7999999999999999999996554           4444444432       222221     1112224444444433


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVE  165 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~  165 (220)
                      .+-.......+....+.+++..+.  ...+..+.-++.|.|+.++.        |++++.+|++.++|  .||+|.....
T Consensus        96 ~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVai--------ARAL~~~P~lLLlDEPFgALDalTR~  167 (248)
T COG1116          96 GLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAI--------ARALATRPKLLLLDEPFGALDALTRE  167 (248)
T ss_pred             hhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHH--------HHHHhcCCCEEEEcCCcchhhHHHHH
Confidence            222222333444555666666532  23334455567777777554        55999999999999  9999999999


Q ss_pred             HHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecC
Q 027703          166 AAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDG  204 (220)
Q Consensus       166 ~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G  204 (220)
                      .+-+++.++..+ +.|++++|||+++|..++|||++|.++
T Consensus       168 ~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         168 ELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             HHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence            999999999976 899999999999999999999999995

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.84  E-value=9.6e-22  Score=151.18  Aligned_cols=182  Identities=17%  Similarity=0.191  Sum_probs=123.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEE-----EEEEEecCCcchhhh-----hhHHhhc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEV-----KAQIWDTAGQERFRA-----VTSAYYR   85 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~-----~~~~~d~~g~~~~~~-----~~~~~~~   85 (220)
                      -++|+||||+|||||++.++|..-|           ..+.+.+.+..+     ...+--.|++..+..     ...-..-
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLGll~p-----------~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~  100 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILGLLKP-----------SSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLL  100 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcC-----------CcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHc
Confidence            3799999999999999999998444           445555444321     112233444321111     1111111


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHH--HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCC
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEE--LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDS  161 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~  161 (220)
                      ..-.-.-+|..-+....+.+.+.++.  +....+.++.-++.|.++.+        -.|+++++++++.++|  +++.|.
T Consensus       101 g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV--------~lARAL~~~p~lllLDEP~~gvD~  172 (254)
T COG1121         101 GRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRV--------LLARALAQNPDLLLLDEPFTGVDV  172 (254)
T ss_pred             cCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHH--------HHHHHhccCCCEEEecCCcccCCH
Confidence            11111112222223335556666655  34444555555566655554        3466999999999999  999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccccc
Q 027703          162 TNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSC  217 (220)
Q Consensus       162 ~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~~  217 (220)
                      .+..+++++|.++..+++++++++||++.+..++|+++.|+. ++++.|+++++.-
T Consensus       173 ~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~~  227 (254)
T COG1121         173 AGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVLT  227 (254)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhccC
Confidence            999999999999998899999999999999999999999874 6999999988654

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.84  E-value=6.3e-22  Score=148.33  Aligned_cols=177  Identities=16%  Similarity=0.224  Sum_probs=125.1

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE---------EEEecCC-c--chhhhhhHHhh
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA---------QIWDTAG-Q--ERFRAVTSAYY   84 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~---------~~~d~~g-~--~~~~~~~~~~~   84 (220)
                      ++++|+||+|||||+++|.|.           .+...+.+.+.|.++.-         -+--+|. .  +.......+..
T Consensus        32 v~llG~NGaGKTTlLkti~Gl-----------~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~  100 (237)
T COG0410          32 VALLGRNGAGKTTLLKTIMGL-----------VRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLL  100 (237)
T ss_pred             EEEECCCCCCHHHHHHHHhCC-----------CCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHh
Confidence            799999999999999999999           44467888888765421         0111111 0  00011111111


Q ss_pred             cCCcEEEEEEe--CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCC
Q 027703           85 RGAVGALVVYD--ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALD  160 (220)
Q Consensus        85 ~~~~~~i~v~d--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~  160 (220)
                      -.    .+...  .......+.+.+++..+........-.++.|.++-++.        +++++.+|++.++|  +.++.
T Consensus       101 ~g----~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAi--------aRALm~~PklLLLDEPs~GLa  168 (237)
T COG0410         101 LG----AYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAI--------ARALMSRPKLLLLDEPSEGLA  168 (237)
T ss_pred             hh----hhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHH--------HHHHhcCCCEEEecCCccCcC
Confidence            11    11111  11111255566666667666655555555555555444        56999999999999  99999


Q ss_pred             CCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          161 STNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      |.-++++|+.|.++..+ +.++++++|+...|..+|||.|||.+|+++.+|+++++.
T Consensus       169 P~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~  225 (237)
T COG0410         169 PKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL  225 (237)
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence            99999999999999976 789999999999999999999999999999999988865

>TIGR00436 era GTP-binding protein Era

Probab=99.84  E-value=1.7e-19  Score=143.20  Aligned_cols=155  Identities=18%  Similarity=0.110  Sum_probs=105.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh--------hhhHHhhcCC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR--------AVTSAYYRGA   87 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~~~   87 (220)
                      +|+++|++|||||||+|+|.+..+...++.+.+++.....+...+. .++.+|||||.....        ......+..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            6899999999999999999998765544433333322233333332 468899999975321        1233467889


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVEA  166 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~  166 (220)
                      |++++|+|+++..+..  ..++..+..   ...|+++++||+|+.... ........+....+. .++.+||+++.|+++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            9999999998876664  223333332   357899999999985321 112223333333343 789999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          167 AFEVVIREIYS  177 (220)
Q Consensus       167 l~~~l~~~~~~  177 (220)
                      +++++.+.+.+
T Consensus       155 L~~~l~~~l~~  165 (270)
T TIGR00436       155 LAAFIEVHLPE  165 (270)
T ss_pred             HHHHHHHhCCC
Confidence            99999887754

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.84  E-value=7.8e-23  Score=163.48  Aligned_cols=176  Identities=19%  Similarity=0.199  Sum_probs=116.1

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE-------EEEecCCcc---hhhhhhHHhhcC
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA-------QIWDTAGQE---RFRAVTSAYYRG   86 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~-------~~~d~~g~~---~~~~~~~~~~~~   86 (220)
                      ++++||||||||||++.|++...+           ..|.+.+.|....-       .+--.+..+   +.......+..-
T Consensus        34 ~gllG~NGAGKTTllk~l~gl~~p-----------~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~  102 (293)
T COG1131          34 FGLLGPNGAGKTTLLKILAGLLKP-----------TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFF  102 (293)
T ss_pred             EEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHH
Confidence            899999999999999999999443           56677666643211       011111111   111111110000


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhC--CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCC
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHC--DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDST  162 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~  162 (220)
                      +.    ++-.......+.+.+++..+....  .....-++.|+|+.+.        .|.+++.+|++.++|  ||++|+.
T Consensus       103 ~~----l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~--------ia~aL~~~P~lliLDEPt~GLDp~  170 (293)
T COG1131         103 AR----LYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLS--------IALALLHDPELLILDEPTSGLDPE  170 (293)
T ss_pred             HH----HhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHH--------HHHHHhcCCCEEEECCCCcCCCHH
Confidence            00    000000112233444444432221  2223335555555543        356999999999999  9999999


Q ss_pred             CHHHHHHHHHHHHHHH-hhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          163 NVEAAFEVVIREIYSN-ISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       163 ~v~~l~~~l~~~~~~~-~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ++.++++.|.++..++ .+++++||.++++..+||+|++|++|+++..|+++++
T Consensus       171 ~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l  224 (293)
T COG1131         171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL  224 (293)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence            9999999999999986 8999999999999999999999999999999988774

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.84  E-value=6.3e-20  Score=128.01  Aligned_cols=114  Identities=32%  Similarity=0.597  Sum_probs=83.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCC--CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDS--NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~--~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      ||+|+|++|||||||+++|.+..+..  .+.++.+................+.+||++|+..+...+...+..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            79999999999999999999998771  1111111222222444555556689999999988777777778999999999


Q ss_pred             EeCCCcccHHHHHHH---HHHHHhhCCCCCcEEEEEecCC
Q 027703           94 YDITRRSSFDSVKRW---LEELTTHCDTAVGRMLVGNKCD  130 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~v~~k~D  130 (220)
                      ||.+++.+++.+..+   +..+... ..+.|++++|||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence            999999999998655   4444443 34599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.83  E-value=4.3e-22  Score=149.44  Aligned_cols=86  Identities=13%  Similarity=0.176  Sum_probs=78.7

Q ss_pred             CCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCC
Q 027703          131 LDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANS  207 (220)
Q Consensus       131 l~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~  207 (220)
                      |....++.++.|+++++++++.+.|  ++++||.+.+.+++.+.++..+ +.|+++.-|+++.|+.||+|++-|++|+++
T Consensus       148 LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv  227 (258)
T COG3638         148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV  227 (258)
T ss_pred             CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE
Confidence            3444556677788999999999999  9999999999999999999977 899999999999999999999999999999


Q ss_pred             CCCCCcccc
Q 027703          208 SKGSMMDFS  216 (220)
Q Consensus       208 ~~g~~~~~~  216 (220)
                      ++|++++++
T Consensus       228 fDg~~~el~  236 (258)
T COG3638         228 FDGPASELT  236 (258)
T ss_pred             EeCChhhhh
Confidence            999998865

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2.4e-19  Score=123.43  Aligned_cols=156  Identities=21%  Similarity=0.396  Sum_probs=122.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .++|.++|..++||||++..|.... +....||+++.....+  +  +++.+++||++|++..+..|..|+....++|||
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVt--y--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT--Y--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEE--e--eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            5899999999999999999997764 3445567666555433  3  568999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHH-HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      .|+.+....++++..+.. +........++++.+||+|++.++  ++.|...+..     +..+.+..++++++.+..+-
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg  169 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG  169 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence            999888777776655444 333334568889999999998754  6666544433     34556777999999999999


Q ss_pred             HHHHHHHHH
Q 027703          168 FEVVIREIY  176 (220)
Q Consensus       168 ~~~l~~~~~  176 (220)
                      +.|+.+...
T Consensus       170 lswlsnn~~  178 (180)
T KOG0071|consen  170 LSWLSNNLK  178 (180)
T ss_pred             HHHHHhhcc
Confidence            999987653

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.83  E-value=2.5e-21  Score=139.66  Aligned_cols=180  Identities=19%  Similarity=0.268  Sum_probs=121.4

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc---------hhhhhhHHhhc--
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE---------RFRAVTSAYYR--   85 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~---------~~~~~~~~~~~--   85 (220)
                      |.|+|.+|||||||+++|.-.+-|           ..+.+..++..+.+. .|-.|..         +.+......++  
T Consensus        35 isIIGsSGSGKSTfLRCiN~LE~P-----------~~G~I~v~geei~~k-~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~F  102 (256)
T COG4598          35 ISIIGSSGSGKSTFLRCINFLEKP-----------SAGSIRVNGEEIRLK-RDKDGQLKPADKRQLQRLRTRLGMVFQHF  102 (256)
T ss_pred             EEEecCCCCchhHHHHHHHhhcCC-----------CCceEEECCeEEEee-eCCCCCeeeCCHHHHHHHHHHhhHhhhhc
Confidence            789999999999999999988655           346666666665543 2333321         11111011111  


Q ss_pred             ----------C-CcEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeE
Q 027703           86 ----------G-AVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFF  153 (220)
Q Consensus        86 ----------~-~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (220)
                                + ..+-+-|.-.+..+..+....++..+..... ...|..       +....++....+++++-+|.+.+
T Consensus       103 NLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~-------LSGGQQQR~aIARaLameP~vmL  175 (256)
T COG4598         103 NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAH-------LSGGQQQRVAIARALAMEPEVML  175 (256)
T ss_pred             chhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccc-------cCchHHHHHHHHHHHhcCCceEe
Confidence                      1 1111223333333334444444444221111 122322       22233444566889999999999


Q ss_pred             EE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          154 ME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       154 ~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ||  |||+||+-+.+++.-+.++.+++.|++++||.+.+|...+++++++++|.|.++|+|+++
T Consensus       176 FDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qv  239 (256)
T COG4598         176 FDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV  239 (256)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHH
Confidence            99  999999999999999999999999999999999999999999999999999999999875

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.83  E-value=2.1e-21  Score=155.50  Aligned_cols=177  Identities=19%  Similarity=0.237  Sum_probs=116.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh-h--HHhhcCCcEEE-E
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV-T--SAYYRGAVGAL-V   92 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~-~--~~~~~~~~~~i-~   92 (220)
                      ++++||+||||||||+.|.|.+-+           ..|.+.++|+.+.    |.+-..+-..+ .  ..+|.+..+.- +
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~~-----------~~G~I~i~g~~vt----~l~P~~R~iamVFQ~yALyPhmtV~~Ni   96 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEEP-----------TSGEILIDGRDVT----DLPPEKRGIAMVFQNYALYPHMTVYENI   96 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECC----CCChhHCCEEEEeCCccccCCCcHHHHh
Confidence            799999999999999999999544           5677777775542    22221111110 0  11112111100 0


Q ss_pred             EEeCCC-cccHHHHHHHHHHH------HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCC
Q 027703           93 VYDITR-RSSFDSVKRWLEEL------TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTN  163 (220)
Q Consensus        93 v~d~~~-~~~~~~~~~~~~~l------~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~  163 (220)
                      -|.... ......+..-..+.      ....+..+.-++.|.++.        +..+++++++|++.++|  .|.+|..-
T Consensus        97 af~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQR--------VAlaRAlVr~P~v~L~DEPlSnLDa~l  168 (338)
T COG3839          97 AFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQR--------VALARALVRKPKVFLLDEPLSNLDAKL  168 (338)
T ss_pred             hhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHH--------HHHHHHHhcCCCEEEecCchhHhhHHH
Confidence            000000 01122222222221      122222233344444444        45566999999999999  99999999


Q ss_pred             HHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          164 VEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       164 v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..++..+|.++..+ +.|.+++|||+.+|+.+||||++|++|++...|+|.++-
T Consensus       169 R~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely  222 (338)
T COG3839         169 RVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY  222 (338)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence            99999999998877 899999999999999999999999999999999998864

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.83  E-value=4e-19  Score=134.48  Aligned_cols=149  Identities=19%  Similarity=0.208  Sum_probs=102.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhh--CcCCCCC------------cccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFAR--NEFDSNS------------KATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVT   80 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~--~~~~~~~------------~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~   80 (220)
                      -+|+++|.+|+|||||++++..  ..+...+            .++.+.........+..+.+.+.+||++|+..+....
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999997  4554433            1222233333333444456788999999999988888


Q ss_pred             HHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC-CHHHHHHHHHH-------hCCe
Q 027703           81 SAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV-STEEGKSLAEE-------EGLF  152 (220)
Q Consensus        81 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~-~~~~~~~~~~~-------~~~~  152 (220)
                      ..+++.+|++++|+|+++.. +.....++..+..   ...|+++++||+|+...+.. ..+++..+...       .+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            89999999999999998743 2333333333322   35788999999998643211 12334444422       2578


Q ss_pred             EEEeccCCCCCHHHH
Q 027703          153 FMETSALDSTNVEAA  167 (220)
Q Consensus       153 ~~~~Sa~~~~~v~~l  167 (220)
                      ++.+||+++.|+.++
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            999999999888555

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.82  E-value=4e-19  Score=130.12  Aligned_cols=140  Identities=18%  Similarity=0.190  Sum_probs=99.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh----hhHHhhcCCcEEE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA----VTSAYYRGAVGAL   91 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~----~~~~~~~~~~~~i   91 (220)
                      +|+++|++|+|||||+++|.+....  ..       ..+.+.+.+.    .+||+||......    .....++.+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~-------~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--AR-------KTQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--Cc-------cceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            6999999999999999999875311  11       2233334333    2699999732221    2223468999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC--eEEEeccCCCCCHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL--FFMETSALDSTNVEAAFE  169 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~l~~  169 (220)
                      +|+|.++..++..  .|+..+    ....|+++++||.|+..   ...+....++...++  +++.+|+++++|++++++
T Consensus        70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            9999998776533  333332    12468899999999864   235556676667664  899999999999999999


Q ss_pred             HHHHHHHH
Q 027703          170 VVIREIYS  177 (220)
Q Consensus       170 ~l~~~~~~  177 (220)
                      ++.+.+.+
T Consensus       141 ~l~~~~~~  148 (158)
T PRK15467        141 YLASLTKQ  148 (158)
T ss_pred             HHHHhchh
Confidence            99988754

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.82  E-value=1.1e-19  Score=131.07  Aligned_cols=148  Identities=19%  Similarity=0.249  Sum_probs=106.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh------hhhhHHh--hcC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF------RAVTSAY--YRG   86 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~------~~~~~~~--~~~   86 (220)
                      ++|+++|.|+||||||+|+|+|........|..+++...+.+.+.+  ..+.+.|+||....      ......+  ..+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999986666667788888888888877  46778999995322      1222333  368


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      +|+++.|.|+++.   ++-..+..++...   ..|++++.||.|......+.. +...+.+..+++++.+||.++.|+++
T Consensus        79 ~D~ii~VvDa~~l---~r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNL---ERNLYLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGH---HHHHHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCH---HHHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            9999999999763   2222233333332   589999999999765443333 35678888899999999999999999


Q ss_pred             HHHHH
Q 027703          167 AFEVV  171 (220)
Q Consensus       167 l~~~l  171 (220)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            99865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.82  E-value=9.3e-19  Score=147.02  Aligned_cols=152  Identities=20%  Similarity=0.233  Sum_probs=112.5

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh--------hHH
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV--------TSA   82 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~--------~~~   82 (220)
                      ...+||+++|++|||||||+|+|++..... ...++.+.+.....+.+++  ..+.+|||+|+......        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            456899999999999999999999875432 2234445666667777776  45689999998543221        235


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC
Q 027703           83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST  162 (220)
Q Consensus        83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (220)
                      +++.+|++++|+|.+++.+++..  |+..+..   ...|+++++||.|+...      +...+....+.+++.+|+++ .
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~  346 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-L  346 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-C
Confidence            67899999999999988887765  5555432   35799999999998642      12244555667888999998 6


Q ss_pred             CHHHHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIREIYS  177 (220)
Q Consensus       163 ~v~~l~~~l~~~~~~  177 (220)
                      |+.++++.+.+.+.+
T Consensus       347 gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       347 KIKALVDLLTQKINA  361 (442)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999887765

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.82  E-value=1.1e-18  Score=127.03  Aligned_cols=146  Identities=23%  Similarity=0.239  Sum_probs=104.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh--------hhHHhhc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------VTSAYYR   85 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~   85 (220)
                      ++|+++|++|+|||||++++.+..+.. ...++.+.......+...+  ..+.+||++|......        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            689999999999999999999886432 2223333333344444443  5778999999654321        1234567


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE  165 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (220)
                      .++++++|+|++++.+......+..      ....|+++++||.|+......       .......+++.+|++++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            8999999999998777766544332      235899999999998654322       334456789999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          166 AAFEVVIREI  175 (220)
Q Consensus       166 ~l~~~l~~~~  175 (220)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=3.2e-20  Score=134.05  Aligned_cols=171  Identities=29%  Similarity=0.536  Sum_probs=146.1

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      .+++|++++|..|.||||+.++.+..+|+..+.+|.+.+..+-.+..+...+++..||+.|++.+......++-+....+
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            67999999999999999999999999999999999998887666655555699999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      ++||++....+..+.+|...+.+.+. ++|+++.|||.|+.. +. .....-.+.+..++.|++.|++..-|.+.-|-|+
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~-r~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L  164 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKA-RK-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL  164 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccc-cc-cccccceeeecccceeEEeecccccccccchHHH
Confidence            99999999999999999999877654 599999999999754 22 1112224555667899999999999999999999


Q ss_pred             HHHHHHHhhhhhcC
Q 027703          172 IREIYSNISRKVLN  185 (220)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (220)
                      ++.+..+-...|+.
T Consensus       165 arKl~G~p~Lefva  178 (216)
T KOG0096|consen  165 ARKLTGDPSLEFVA  178 (216)
T ss_pred             hhhhcCCCCeEEEe
Confidence            99998776666654

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.82  E-value=8.3e-22  Score=144.47  Aligned_cols=173  Identities=20%  Similarity=0.274  Sum_probs=114.5

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe-----------EEEEEEEecCCcc-hhhh-hhHHh
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK-----------EVKAQIWDTAGQE-RFRA-VTSAY   83 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~-----------~~~~~~~d~~g~~-~~~~-~~~~~   83 (220)
                      ++++|+||+||||+++.|.+.-.|+++.           +.+++-           .+-+.+ +-.|.. +... ....|
T Consensus        31 ~GlLG~NGAGKTT~LRmiatlL~P~~G~-----------v~idg~d~~~~p~~vrr~IGVl~-~e~glY~RlT~rEnl~~   98 (245)
T COG4555          31 TGLLGENGAGKTTLLRMIATLLIPDSGK-----------VTIDGVDTVRDPSFVRRKIGVLF-GERGLYARLTARENLKY   98 (245)
T ss_pred             EEEEcCCCCCchhHHHHHHHhccCCCce-----------EEEeecccccChHHHhhhcceec-CCcChhhhhhHHHHHHH
Confidence            6899999999999999999996665444           433331           111111 111111 1000 00111


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHH--HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccC
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRWLEE--LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSAL  159 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~  159 (220)
                      +.      -+++..+.+...++.++.+.  +....+...--++-|.|+.        +..|++++.+|.+.++|  +|++
T Consensus        99 Fa------~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqk--------V~iARAlvh~P~i~vlDEP~sGL  164 (245)
T COG4555          99 FA------RLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQK--------VAIARALVHDPSILVLDEPTSGL  164 (245)
T ss_pred             HH------HHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHH--------HHHHHHHhcCCCeEEEcCCCCCc
Confidence            11      12233333333333333322  2222222222244455554        45567999999999999  9999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          160 DSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      |-.....+.+.+.++..++.+++|.||.+.++...||+|+++++|+++..|+.+++
T Consensus       165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l  220 (245)
T COG4555         165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL  220 (245)
T ss_pred             cHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHH
Confidence            99999999999999999999999999999999999999999999999999997664

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.82  E-value=1.3e-21  Score=157.74  Aligned_cols=77  Identities=13%  Similarity=0.217  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.+|++.++|  ++++|+.+..++++.|.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       147 l~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l  225 (306)
T PRK13537        147 LTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL  225 (306)
T ss_pred             HHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            44477999999999999  999999999999999988866689999999999999999999999999999999998875

>PRK15494 era GTPase Era; Provisional

Probab=99.82  E-value=8.7e-19  Score=143.03  Aligned_cols=156  Identities=20%  Similarity=0.294  Sum_probs=106.6

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCccc-ceeeeeEEEEEeCCeEEEEEEEecCCcch-hhh-------hhHH
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKAT-IGVEFQTQVVDIDGKEVKAQIWDTAGQER-FRA-------VTSA   82 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t-~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-~~~-------~~~~   82 (220)
                      +...+|+++|.+|||||||+|+|.+..+....+.. .+.....+.+..++  .++.||||||... +..       ....
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            44579999999999999999999998775432221 22333345555555  4678999999742 111       1123


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHH-HHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC--CeEEEeccC
Q 027703           83 YYRGAVGALVVYDITRRSSFDSVKR-WLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG--LFFMETSAL  159 (220)
Q Consensus        83 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  159 (220)
                      .+..+|++++|+|..+  ++..... ++..+...   ..|.++++||+|+...   ...++.+.+....  ..++.+||+
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            4678999999999765  4444433 33334332   3466789999998642   2445555555433  578999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027703          160 DSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~~~~  177 (220)
                      ++.|+++++++|.+.+.+
T Consensus       200 tg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        200 SGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             CccCHHHHHHHHHHhCCC
Confidence            999999999999987654

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=2.4e-21  Score=158.83  Aligned_cols=77  Identities=17%  Similarity=0.242  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.+|++.++|  +|++|.....++.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       143 valARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~  222 (356)
T PRK11650        143 VAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV  222 (356)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence            44477999999999999  9999999999999999988876 89999999999999999999999999999999998775

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.82  E-value=3.2e-18  Score=142.38  Aligned_cols=161  Identities=19%  Similarity=0.125  Sum_probs=116.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----h---hhhhHHhhcCC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----F---RAVTSAYYRGA   87 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----~---~~~~~~~~~~~   87 (220)
                      ..|+++|.|+|||||||++|++........+..+..+..+.+.+.+ ...+.+||+||...    .   ...+......+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            4799999999999999999998764333333444555556565542 24788999999632    1   11222334568


Q ss_pred             cEEEEEEeCCCc---ccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC
Q 027703           88 VGALVVYDITRR---SSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST  162 (220)
Q Consensus        88 ~~~i~v~d~~~~---~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (220)
                      +++++|+|+++.   ..++....|..++..+..  ...|.++++||+|+...    .+....+....+.+++.+||+++.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999764   567777777777776543  35899999999998431    234445555666789999999999


Q ss_pred             CHHHHHHHHHHHHHHHhh
Q 027703          163 NVEAAFEVVIREIYSNIS  180 (220)
Q Consensus       163 ~v~~l~~~l~~~~~~~~~  180 (220)
                      |++++++++.+.+.+...
T Consensus       314 GI~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        314 GLDELLYAVAELLEETPE  331 (424)
T ss_pred             CHHHHHHHHHHHHHhCcc
Confidence            999999999998876433

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=6.9e-19  Score=149.77  Aligned_cols=175  Identities=22%  Similarity=0.180  Sum_probs=119.8

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----------hhhhh-
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----------FRAVT-   80 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----------~~~~~-   80 (220)
                      ..+||+++|.+|||||||+++|++..+. ....++.+.+.....+.+++.  .+.+|||+|..+          +.... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            4589999999999999999999998653 333445555555566666665  456899999521          11111 


Q ss_pred             HHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC--HHHHHH-HHHHhCCeEEEec
Q 027703           81 SAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS--TEEGKS-LAEEEGLFFMETS  157 (220)
Q Consensus        81 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~--~~~~~~-~~~~~~~~~~~~S  157 (220)
                      ..+++.+|++++|+|+++..+++... ++..+..   ...|+++++||+|+.......  ..+... +......+++.+|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            23568999999999999988888764 3333332   357999999999986422110  111111 1112236789999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccc
Q 027703          158 ALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS  194 (220)
Q Consensus       158 a~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~  194 (220)
                      |+++.|++++|+.+.+.+.+ ....+.|+.++.+...
T Consensus       364 Ak~g~gv~~lf~~i~~~~~~-~~~~i~t~~ln~~~~~  399 (472)
T PRK03003        364 AKTGRAVDKLVPALETALES-WDTRIPTGRLNAWLGE  399 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHH-hcccCCHHHHHHHHHH
Confidence            99999999999999887664 3345567776665543

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.81  E-value=1.1e-20  Score=157.45  Aligned_cols=180  Identities=18%  Similarity=0.222  Sum_probs=119.4

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE-------------EEEecCCcchhhhhhHHh
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA-------------QIWDTAGQERFRAVTSAY   83 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~-------------~~~d~~g~~~~~~~~~~~   83 (220)
                      .+++|+||+|||||++.|.|..           .++.+.+.++|+.+.+             ..-+..-.+. .....+.
T Consensus        37 ~aL~GeNGAGKSTLmKiLsGv~-----------~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~-LsVaeNi  104 (500)
T COG1129          37 HALLGENGAGKSTLMKILSGVY-----------PPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPN-LSVAENI  104 (500)
T ss_pred             EEEecCCCCCHHHHHHHHhCcc-----------cCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCC-ccHHHHh
Confidence            6899999999999999999994           4456777777765432             1111111111 1111221


Q ss_pred             h-c-CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccC
Q 027703           84 Y-R-GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSAL  159 (220)
Q Consensus        84 ~-~-~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~  159 (220)
                      + - ....-..+.  +...........+..+.....   |--.+   .+|.....+.++.++++..+.++.++|  ||++
T Consensus       105 fLgre~~~~~g~i--d~~~m~~~A~~~l~~lg~~~~---~~~~v---~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaL  176 (500)
T COG1129         105 FLGREPTRRFGLI--DRKAMRRRARELLARLGLDID---PDTLV---GDLSIAQRQMVEIARALSFDARVLILDEPTAAL  176 (500)
T ss_pred             hcccccccCCCcc--CHHHHHHHHHHHHHHcCCCCC---hhhhh---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            1 0 000000111  112222223333332221111   21111   455555667788899999999999999  9999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCC-Ccccc
Q 027703          160 DSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS-MMDFS  216 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~-~~~~~  216 (220)
                      +...++.+|+.+.++..++.+++|+||.++++.+.|||++||+||+.+..+. ..+++
T Consensus       177 t~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~  234 (500)
T COG1129         177 TVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETS  234 (500)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCC
Confidence            9999999999999999999999999999999999999999999999999888 46543

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.81  E-value=2.3e-21  Score=156.25  Aligned_cols=77  Identities=14%  Similarity=0.264  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.+|++.++|  ++++|+.+...+++.+.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       133 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l  211 (302)
T TIGR01188       133 LDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL  211 (302)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            34477999999999999  999999999999999988876689999999999999999999999999999999988765

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.81  E-value=7.8e-21  Score=159.45  Aligned_cols=179  Identities=18%  Similarity=0.167  Sum_probs=116.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe--------------EEEEEEEecCCcchhhhhhH
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK--------------EVKAQIWDTAGQERFRAVTS   81 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~--------------~~~~~~~d~~g~~~~~~~~~   81 (220)
                      .++++|++|||||||.+.|.+...|..           +.+.+++.              .+++.|-|-...-..+....
T Consensus       319 ~lglVGeSGsGKSTlar~i~gL~~P~~-----------G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~  387 (539)
T COG1123         319 TLGLVGESGSGKSTLARILAGLLPPSS-----------GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVG  387 (539)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCC-----------ceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHH
Confidence            489999999999999999999965543           33434332              23333433332222222222


Q ss_pred             HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHH--h-hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--e
Q 027703           82 AYYRGAVGALVVYDITRRSSFDSVKRWLEELT--T-HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--T  156 (220)
Q Consensus        82 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~--~-~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~  156 (220)
                      .....+-.+-..  .........+.+++..+.  . .....+.-++.|.++.++        .|++++.+|++.+.|  +
T Consensus       388 ~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRva--------IARALa~~P~lli~DEp~  457 (539)
T COG1123         388 DILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVA--------IARALALEPKLLILDEPV  457 (539)
T ss_pred             HHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHH--------HHHHHhcCCCEEEecCCc
Confidence            222211111000  001111122323333211  1 112233345556555544        466999999999999  9


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          157 SALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      |++|.....++++.+.++..+ +.+.+|+|||+..+..+||||+||++|+|++.|+.+++
T Consensus       458 SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v  517 (539)
T COG1123         458 SALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKV  517 (539)
T ss_pred             cccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHH
Confidence            999999999999999999987 99999999999999999999999999999999976654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.81  E-value=3.2e-22  Score=163.76  Aligned_cols=78  Identities=18%  Similarity=0.191  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  +|++|+....++++.+.++..+ +.|++++||+++++..+||++++|++|+++..|+++++
T Consensus       138 V~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei  217 (363)
T TIGR01186       138 VGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI  217 (363)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence            44488999999999999  9999999999999999988766 89999999999999999999999999999999998875


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       218 ~  218 (363)
T TIGR01186       218 L  218 (363)
T ss_pred             H
Confidence            3

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.81  E-value=2.6e-21  Score=157.54  Aligned_cols=77  Identities=14%  Similarity=0.266  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.+|++.++|  +|++|+.+...+++.+.++..+ +.+++++||+++.+..+||++++|++|++++.|+++++
T Consensus       149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v  228 (343)
T TIGR02314       149 VAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI  228 (343)
T ss_pred             HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            33488999999999999  9999999999999999998876 89999999999999999999999999999999998765

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.81  E-value=1.2e-21  Score=144.88  Aligned_cols=180  Identities=18%  Similarity=0.162  Sum_probs=113.5

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE-----
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL-----   91 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i-----   91 (220)
                      .+++||+||||||||+.+........      .-...|.+.++|.++.-.-.|..   ..+......+++++.+-     
T Consensus        36 TAlIGPSGcGKST~LR~lNRmndl~~------~~r~~G~v~~~g~ni~~~~~d~~---~lRr~vGMVFQkPnPFp~SIyd  106 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNRMNDLIP------GARVEGEVLLDGKNIYDPKVDVV---ELRRRVGMVFQKPNPFPMSIYD  106 (253)
T ss_pred             EEEECCCCcCHHHHHHHHHhhcccCc------CceEEEEEEECCeeccCCCCCHH---HHHHHheeeccCCCCCCchHHH
Confidence            58999999999999999976632211      11235778788766532111111   11111111122221110     


Q ss_pred             ------EEEeCCCcccHHHHH-------HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--e
Q 027703           92 ------VVYDITRRSSFDSVK-------RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--T  156 (220)
Q Consensus        92 ------~v~d~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~  156 (220)
                            -..-..+ ..++++.       .+|.+++....++.--++.|.++.|        ..|++++-+|++.++|  |
T Consensus       107 NVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL--------cIARalAv~PeVlLmDEPt  177 (253)
T COG1117         107 NVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL--------CIARALAVKPEVLLMDEPT  177 (253)
T ss_pred             HHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH--------HHHHHHhcCCcEEEecCcc
Confidence                  0000111 1122211       2344555444443433444444444        4466999999999999  9


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          157 SALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ||+||.+...+-+.|.++- ++.|++++||++..|.+.+|+.++|.+|++++.|..+++
T Consensus       178 SALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i  235 (253)
T COG1117         178 SALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI  235 (253)
T ss_pred             cccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence            9999999888877666554 789999999999999999999999999999999987764

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.81  E-value=1.1e-18  Score=147.17  Aligned_cols=149  Identities=23%  Similarity=0.236  Sum_probs=110.1

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh--------hHHh
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV--------TSAY   83 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~--------~~~~   83 (220)
                      ..++|+++|++|||||||+|+|.+.... ....+..+.+.....+.+++  ..+.+|||+|...+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3489999999999999999999997643 23334444555556666665  46789999997543221        2346


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN  163 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (220)
                      +..+|++++|+|.+++.+++....|..      ....|+++++||+|+.......        .....+++.+|++++.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            788999999999998887775533322      3457999999999986433211        33456789999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027703          164 VEAAFEVVIREIYS  177 (220)
Q Consensus       164 v~~l~~~l~~~~~~  177 (220)
                      ++++++++.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.81  E-value=4.1e-21  Score=157.29  Aligned_cols=79  Identities=15%  Similarity=0.155  Sum_probs=72.6

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      ....+++++.++++.++|  +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|++++
T Consensus       144 RvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~  223 (353)
T PRK10851        144 RVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQ  223 (353)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            344488999999999999  9999999999999999998876 7899999999999999999999999999999999887


Q ss_pred             cc
Q 027703          215 FS  216 (220)
Q Consensus       215 ~~  216 (220)
                      +.
T Consensus       224 i~  225 (353)
T PRK10851        224 VW  225 (353)
T ss_pred             HH
Confidence            64

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.81  E-value=1.2e-20  Score=141.97  Aligned_cols=87  Identities=16%  Similarity=0.203  Sum_probs=76.5

Q ss_pred             CCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCC
Q 027703          132 DSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSS  208 (220)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~  208 (220)
                      ...+.....-||+++.+|.+.++|  ||++||.+...+-+.|.++... +.|++++|||++.+..+|||++++.||+|+.
T Consensus       147 SGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~  226 (263)
T COG1127         147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIA  226 (263)
T ss_pred             cchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEE
Confidence            333334455688999999999999  9999999999988888888877 8999999999999999999999999999999


Q ss_pred             CCCCcccccc
Q 027703          209 KGSMMDFSCC  218 (220)
Q Consensus       209 ~g~~~~~~~~  218 (220)
                      .|+++++.-+
T Consensus       227 ~Gt~~el~~s  236 (263)
T COG1127         227 EGTPEELLAS  236 (263)
T ss_pred             eCCHHHHHhC
Confidence            9999987654

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.81  E-value=1.1e-21  Score=147.71  Aligned_cols=178  Identities=16%  Similarity=0.214  Sum_probs=129.5

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC---cEEEEE
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA---VGALVV   93 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~---~~~i~v   93 (220)
                      .+++|+||+||||.+++|++.           .+++.+.++++|..+.....+.-|.-+   .....+++.   |.+.|+
T Consensus        31 ~GllG~NGAGKTTtfRmILgl-----------le~~~G~I~~~g~~~~~~~~~rIGyLP---EERGLy~k~tv~dql~yl   96 (300)
T COG4152          31 FGLLGPNGAGKTTTFRMILGL-----------LEPTEGEITWNGGPLSQEIKNRIGYLP---EERGLYPKMTVEDQLKYL   96 (300)
T ss_pred             EEeecCCCCCccchHHHHhcc-----------CCccCceEEEcCcchhhhhhhhcccCh---hhhccCccCcHHHHHHHH
Confidence            689999999999999999999           555678888888776655554444211   111111111   111111


Q ss_pred             ---EeCCCcccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHH
Q 027703           94 ---YDITRRSSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEA  166 (220)
Q Consensus        94 ---~d~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~  166 (220)
                         -.+...+.-..+..|++.+.....  +.+.-++-||.+.+        .-..+++.+|.+.++|  .|++||.|++.
T Consensus        97 a~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKI--------QfisaviHePeLlILDEPFSGLDPVN~el  168 (300)
T COG4152          97 AELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKI--------QFISAVIHEPELLILDEPFSGLDPVNVEL  168 (300)
T ss_pred             HHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHH--------HHHHHHhcCCCEEEecCCccCCChhhHHH
Confidence               112234455667778777543332  33444555555554        3455899999999999  99999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          167 AFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       167 l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      +.+.+.++...+.|++|.+|.+..+.+.||++.+|+.|+.|.+|+.++++
T Consensus       169 Lk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir  218 (300)
T COG4152         169 LKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIR  218 (300)
T ss_pred             HHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHH
Confidence            99999999999999999999999999999999999999999999988765

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.81  E-value=5e-22  Score=161.85  Aligned_cols=78  Identities=14%  Similarity=0.192  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ....+++++.+|++.++|  ++++|+.+..++++.|.++..++.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus       180 rv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l  259 (340)
T PRK13536        180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL  259 (340)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            344577999999999999  999999999999999998877789999999999999999999999999999999998875

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.81  E-value=2.5e-18  Score=129.10  Aligned_cols=154  Identities=20%  Similarity=0.193  Sum_probs=108.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCccc----------------ceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKAT----------------IGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV   79 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t----------------~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~   79 (220)
                      +|+++|.+|||||||+++|.+.........+                .+.......+..  ....+.+||+||...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence            4899999999999999999998776544221                112222222222  2467889999999887777


Q ss_pred             hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHH---------
Q 027703           80 TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--STEEGKSLAEE---------  148 (220)
Q Consensus        80 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~~~~~~~~~~---------  148 (220)
                      +..+++.+|++++|+|+.+..+.... .++..+..   ...|+++++||.|+......  ..++.++.++.         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            88888999999999999876654433 33333332   46899999999998642211  12234444433         


Q ss_pred             -----hCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703          149 -----EGLFFMETSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       149 -----~~~~~~~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                           ...+++++|++++.|+.++++++.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 346788999999999999999998764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.3e-21  Score=156.47  Aligned_cols=77  Identities=12%  Similarity=0.204  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.+|++.++|  ++++|..+..++++.+.++..+ +.+++++||+++++..+||++++|++|+++++|+++++
T Consensus       153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~  232 (287)
T PRK13637        153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV  232 (287)
T ss_pred             HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            34477999999999999  9999999999999999988776 89999999999999999999999999999999988764

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.8e-21  Score=154.84  Aligned_cols=80  Identities=18%  Similarity=0.173  Sum_probs=72.0

Q ss_pred             CCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          137 VSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      .....+++++.++++.++|  ++++|+.+..++++.+.++..++.+++++||+++++..+||++++|++|++++.|++++
T Consensus       145 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  224 (274)
T PRK13647        145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSL  224 (274)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            3344588999999999999  99999999999999999887668999999999999999999999999999999999866


Q ss_pred             cc
Q 027703          215 FS  216 (220)
Q Consensus       215 ~~  216 (220)
                      +.
T Consensus       225 ~~  226 (274)
T PRK13647        225 LT  226 (274)
T ss_pred             hc
Confidence            53

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.2e-21  Score=157.72  Aligned_cols=77  Identities=19%  Similarity=0.205  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.++++.++|  ++++|+.+...+++.+.++..++.+++++||+++.+..+|||+++|++|+++.+|+++++
T Consensus       174 valA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~  252 (305)
T PRK13651        174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDI  252 (305)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            33478999999999999  999999999999999998876689999999999999999999999999999999998775

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.80  E-value=3.6e-21  Score=157.86  Aligned_cols=78  Identities=17%  Similarity=0.194  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH--HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS--NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~--~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      ..-+++++.++++.++|  +|++|.....++.+.|.++..+  +.+++++|||++++..+||++++|++|+++..|++++
T Consensus       146 vaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~  225 (362)
T TIGR03258       146 IAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQA  225 (362)
T ss_pred             HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            34478999999999999  9999999999999999988877  6899999999999999999999999999999999887


Q ss_pred             cc
Q 027703          215 FS  216 (220)
Q Consensus       215 ~~  216 (220)
                      +.
T Consensus       226 ~~  227 (362)
T TIGR03258       226 LY  227 (362)
T ss_pred             HH
Confidence            63

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.80  E-value=7e-21  Score=157.75  Aligned_cols=78  Identities=19%  Similarity=0.229  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ...+++++++|++.++|  ++++|.....++++.|.++..++.++++++|+++++..+|||+++|++|+++..|+++++.
T Consensus       148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~  227 (402)
T PRK09536        148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL  227 (402)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            34477999999999999  9999999999999999988766889999999999999999999999999999999988753

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.80  E-value=3.9e-18  Score=143.66  Aligned_cols=162  Identities=17%  Similarity=0.107  Sum_probs=113.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh-------hhhhHHhhcC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF-------RAVTSAYYRG   86 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~-------~~~~~~~~~~   86 (220)
                      ...|+++|.||||||||+++|++........+..+..+..+.+.+.+  ..+.+||+||....       ......+...
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            46799999999999999999998765433334444555666676655  57889999996321       1122335577


Q ss_pred             CcEEEEEEeCCCc----ccHHHHHHHHHHHHhhC-----------CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC
Q 027703           87 AVGALVVYDITRR----SSFDSVKRWLEELTTHC-----------DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL  151 (220)
Q Consensus        87 ~~~~i~v~d~~~~----~~~~~~~~~~~~l~~~~-----------~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~  151 (220)
                      ++++++|+|+++.    ..+..+..+..++..+.           ....|+++++||+|+...... .+.....+...++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~  315 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW  315 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence            8999999999752    34555555555554332           135799999999998643321 1222233344578


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027703          152 FFMETSALDSTNVEAAFEVVIREIYSN  178 (220)
Q Consensus       152 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~  178 (220)
                      +++.+|++++.|+.+++++|.+.+...
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            899999999999999999999998763

>PRK11058 GTPase HflX; Provisional

Probab=99.80  E-value=2.9e-18  Score=143.30  Aligned_cols=158  Identities=18%  Similarity=0.148  Sum_probs=111.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh--hhhh------HHhhc
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF--RAVT------SAYYR   85 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~--~~~~------~~~~~   85 (220)
                      ..+|+++|.+|||||||+|+|++..+.....+..+.++....+.+.+. ..+.+|||+|....  ...+      .....
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            468999999999999999999998765444445555556666666543 25678999997321  1111      23458


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCe-EEEeccCCCCCH
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNV  164 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v  164 (220)
                      .+|++++|+|++++.++..+..|...+........|+++++||+|+.....   ... . ....+.+ ++.+||+++.|+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~-~-~~~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRI-D-RDEENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHH-H-HHhcCCCceEEEeCCCCCCH
Confidence            899999999999988877775554444443334689999999999853211   111 1 1123334 477999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027703          165 EAAFEVVIREIYS  177 (220)
Q Consensus       165 ~~l~~~l~~~~~~  177 (220)
                      +++++++.+.+..
T Consensus       351 deL~e~I~~~l~~  363 (426)
T PRK11058        351 PLLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999988854

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.80  E-value=6e-21  Score=144.30  Aligned_cols=177  Identities=19%  Similarity=0.191  Sum_probs=121.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      =+++++|+||||||||++.|.+...|           +.+.+..+++-..+.-...+-++.......-++...     +.
T Consensus        54 e~vGiiG~NGaGKSTLlkliaGi~~P-----------t~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~-----~~  117 (249)
T COG1134          54 ERVGIIGHNGAGKSTLLKLIAGIYKP-----------TSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGL-----IL  117 (249)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCccCC-----------CCceEEEcceEehhhhcccCCCcccchHHHHHHHHH-----Hh
Confidence            47999999999999999999999544           556666665432221112222222211111121111     11


Q ss_pred             eCCCcccHHHHH--HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHH
Q 027703           95 DITRRSSFDSVK--RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEV  170 (220)
Q Consensus        95 d~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~  170 (220)
                      -.+..+.-+.+.  ..+.++......+....+-|.+..|.-+-        +...+|++.++|  .+.-|..-.+.-.+.
T Consensus       118 G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsi--------a~~~~pdILllDEvlavGD~~F~~K~~~r  189 (249)
T COG1134         118 GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSV--------ATHVEPDILLLDEVLAVGDAAFQEKCLER  189 (249)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhh--------hhhcCCCEEEEehhhhcCCHHHHHHHHHH
Confidence            122222222221  12445666666666666667777765433        666789999999  888999999999999


Q ss_pred             HHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          171 VIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       171 l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      +.++.+++.+++++|||+..++++||++++|++|+++..|+++++
T Consensus       190 l~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~v  234 (249)
T COG1134         190 LNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEV  234 (249)
T ss_pred             HHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHH
Confidence            999988899999999999999999999999999999999999875

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.80  E-value=7.1e-18  Score=117.90  Aligned_cols=164  Identities=23%  Similarity=0.347  Sum_probs=132.7

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCC--CCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchh-hhhhHHhhcCCc
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDS--NSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERF-RAVTSAYYRGAV   88 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~--~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~-~~~~~~~~~~~~   88 (220)
                      ..+|++++|-.++|||++|..+.-....+  ...+|+. +.+...+..+ +-.-.+.++||.|.... ...-..|++-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            35899999999999999999997765444  3445554 2233444332 33347889999997655 455667889999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703           89 GALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      ++++||+..+++||+.+.-+-.++.+..+ +.+|+++++||+|++..+.+..+.|...++..++.++++++.|..+..+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            99999999999999998766666665543 56899999999999988999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          168 FEVVIREIYS  177 (220)
Q Consensus       168 ~~~l~~~~~~  177 (220)
                      |.++...+.+
T Consensus       167 f~~l~~rl~~  176 (198)
T KOG3883|consen  167 FTYLASRLHQ  176 (198)
T ss_pred             HHHHHHhccC
Confidence            9999988754

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2.6e-19  Score=127.61  Aligned_cols=161  Identities=24%  Similarity=0.348  Sum_probs=123.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcC---CCC--CcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEF---DSN--SKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~---~~~--~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~   88 (220)
                      .|-+.|+|+.+||||||+.+......   ..-  ...+.+.....+++...  ...+.|||..|+...++.|..||..++
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~H   94 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWLAH   94 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--cceeEEEEcCChHHHHHHHHHHHHHhc
Confidence            47899999999999999998854421   111  12222333455555555  467889999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHH------HHHHhCCeEEEeccCCC
Q 027703           89 GALVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKS------LAEEEGLFFMETSALDS  161 (220)
Q Consensus        89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~  161 (220)
                      ++++++|+++++.|+.....+..+... ..+..|+++.+||+|++++.  ..++...      +...++.++..+||+++
T Consensus        95 ~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~pvSal~g  172 (197)
T KOG0076|consen   95 GIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQPVSALTG  172 (197)
T ss_pred             eeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence            999999999999999988777775443 34679999999999998744  3333322      23345678888999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIREIYSN  178 (220)
Q Consensus       162 ~~v~~l~~~l~~~~~~~  178 (220)
                      .|+++-.+|+...+..+
T Consensus       173 egv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  173 EGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccHHHHHHHHHHHHhhc
Confidence            99999999999888765

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=2.1e-21  Score=155.56  Aligned_cols=77  Identities=13%  Similarity=0.215  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.+|++.++|  ++++|+.+..++++.+.++..+ +.+++++||+++++..+|||+++|++|+++.+|+++++
T Consensus       154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~  233 (290)
T PRK13634        154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI  233 (290)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            34488999999999999  9999999999999999988776 89999999999999999999999999999999987764

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=6.1e-21  Score=156.03  Aligned_cols=77  Identities=17%  Similarity=0.169  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.+|++.++|  +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus       145 VaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~  224 (351)
T PRK11432        145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL  224 (351)
T ss_pred             HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            44478999999999999  9999999999999999988876 89999999999999999999999999999999998875

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.80  E-value=7.3e-21  Score=155.81  Aligned_cols=78  Identities=18%  Similarity=0.247  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  +|++|.....++.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       143 vaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~  222 (353)
T TIGR03265       143 VALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI  222 (353)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            44488999999999999  9999999999999999998876 89999999999999999999999999999999998875


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       223 ~  223 (353)
T TIGR03265       223 Y  223 (353)
T ss_pred             H
Confidence            3

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.80  E-value=1.6e-18  Score=121.44  Aligned_cols=168  Identities=29%  Similarity=0.529  Sum_probs=144.5

Q ss_pred             CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703            9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (220)
Q Consensus         9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~   88 (220)
                      .++.-.+||.++|++..|||||+-..-+.++.+++..+.++....+++.+.+..+.+.+||+.|+.++.....-...++-
T Consensus        15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv   94 (205)
T KOG1673|consen   15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV   94 (205)
T ss_pred             cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence            35556799999999999999999999999999888899999999999999999999999999999988888888888999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC--CCCC---HHHHHHHHHHhCCeEEEeccCCCCC
Q 027703           89 GALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI--RDVS---TEEGKSLAEEEGLFFMETSALDSTN  163 (220)
Q Consensus        89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~--~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (220)
                      +++++||.+.+..+..+.+|+.......+..+|+ ++|+|-|.-..  ++.-   ..+++.+++-.+..++.+|+....|
T Consensus        95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN  173 (205)
T KOG1673|consen   95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN  173 (205)
T ss_pred             EEEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence            9999999999999999999999988777766775 67999996421  1111   1237888888899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027703          164 VEAAFEVVIREIYS  177 (220)
Q Consensus       164 v~~l~~~l~~~~~~  177 (220)
                      +..+|+.+...+.+
T Consensus       174 v~KIFK~vlAklFn  187 (205)
T KOG1673|consen  174 VQKIFKIVLAKLFN  187 (205)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999998877764

>cd01889 SelB_euk SelB subfamily

Probab=99.80  E-value=2.3e-18  Score=130.18  Aligned_cols=158  Identities=15%  Similarity=0.088  Sum_probs=101.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC----cC---CCCCcccceeeeeEEEEEeC------------CeEEEEEEEecCCcch
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN----EF---DSNSKATIGVEFQTQVVDID------------GKEVKAQIWDTAGQER   75 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~----~~---~~~~~~t~~~~~~~~~i~~~------------~~~~~~~~~d~~g~~~   75 (220)
                      ++|+++|.+|+|||||+++|.+.    .+   +....+..+.......+.+.            +....+.+||+||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            47999999999999999999873    11   11112222222222233332            2357889999999876


Q ss_pred             hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHH------
Q 027703           76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--STEEGKSLAE------  147 (220)
Q Consensus        76 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~~~~~~~~~------  147 (220)
                      +..........+|++++|+|+.+.........+. ....   ...|+++++||+|+......  ..++....+.      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5443334456789999999998765554432222 1111   14688999999997532211  1222222111      


Q ss_pred             -HhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          148 -EEGLFFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       148 -~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                       ..+++++.+|++++.|++++++++.+++.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             23578999999999999999999987664

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1e-20  Score=155.97  Aligned_cols=77  Identities=16%  Similarity=0.225  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  +|++|......+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       142 vaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i  221 (369)
T PRK11000        142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL  221 (369)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            34477999999999999  9999999999999999988876 88999999999999999999999999999999998775

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.80  E-value=1.6e-20  Score=144.83  Aligned_cols=77  Identities=18%  Similarity=0.273  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       140 ~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         140 LEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence            34477999999999999  9999999999999999998877 78999999999999999999999999999999988765

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.80  E-value=3.9e-20  Score=133.69  Aligned_cols=180  Identities=17%  Similarity=0.203  Sum_probs=115.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhh---HHhhcCCcE-
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVT---SAYYRGAVG-   89 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~---~~~~~~~~~-   89 (220)
                      .=+++|+||+|+|||||+|.|.|...|.           .+.+.+++.+..-    ++...+.-++.   .+.+.+.+. 
T Consensus        25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~-----------~G~i~i~g~d~t~----~~P~~RPVSmlFQEnNLFaHLtV~   89 (231)
T COG3840          25 GEIVAILGPSGAGKSTLLNLIAGFETPA-----------SGEILINGVDHTA----SPPAERPVSMLFQENNLFAHLTVA   89 (231)
T ss_pred             CcEEEEECCCCccHHHHHHHHHhccCCC-----------CceEEEcCeecCc----CCcccCChhhhhhccccchhhhhh
Confidence            3468999999999999999999997664           4566666644311    11111100000   011111110 


Q ss_pred             --EEEEEeCC---CcccHHHHHHHHHH--HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCC
Q 027703           90 --ALVVYDIT---RRSSFDSVKRWLEE--LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALD  160 (220)
Q Consensus        90 --~i~v~d~~---~~~~~~~~~~~~~~--l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~  160 (220)
                        +-+-....   +....+.+......  +.-..+.-++.++.|.++.++.        ++.++++.++.++|  .||+|
T Consensus        90 qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvAL--------ARclvR~~PilLLDEPFsALd  161 (231)
T COG3840          90 QNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVAL--------ARCLVREQPILLLDEPFSALD  161 (231)
T ss_pred             hhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHH--------HHHHhccCCeEEecCchhhcC
Confidence              00000100   01111122222222  1111222234456666665443        55999999999999  99999


Q ss_pred             CCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          161 STNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      +--..+++..+.++-.+ +.|++++||.++.+...+++++++.+|+|..+|+.+++.
T Consensus       162 P~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~  218 (231)
T COG3840         162 PALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL  218 (231)
T ss_pred             HHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence            99999999999999876 899999999999999999999999999999999987753

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.79  E-value=1.4e-20  Score=155.08  Aligned_cols=78  Identities=14%  Similarity=0.184  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      +.-+++++.+|++.++|  +|++|......+.+.|.++..+ +.+++++|||+.++..+||++++|++|+++..|+++++
T Consensus       153 VaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i  232 (375)
T PRK09452        153 VAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI  232 (375)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            44478999999999999  9999999999999999998876 89999999999999999999999999999999998775


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       233 ~  233 (375)
T PRK09452        233 Y  233 (375)
T ss_pred             H
Confidence            3

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.79  E-value=5.7e-18  Score=128.20  Aligned_cols=159  Identities=15%  Similarity=0.160  Sum_probs=100.5

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc----------hhhhhhH
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE----------RFRAVTS   81 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~----------~~~~~~~   81 (220)
                      +..++|+++|.+|||||||+++|.+..+.....++.+..........   ...+.+||+||..          .+.....
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            35688999999999999999999997654444444332222111111   2578899999952          2222333


Q ss_pred             HhhcCC---cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC--HHHHHHHHHHhCCeEEEe
Q 027703           82 AYYRGA---VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS--TEEGKSLAEEEGLFFMET  156 (220)
Q Consensus        82 ~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~  156 (220)
                      .++..+   +++++++|.++....... .....+..   ...|+++++||.|+.......  .++...........++.+
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~  174 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF  174 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            444444   567788887765444332 11122221   257889999999975422111  122333333336788999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH
Q 027703          157 SALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      |++++.|++++++.|.+++.+
T Consensus       175 Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        175 SSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             EcCCCCCHHHHHHHHHHHhcC
Confidence            999999999999999877643

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=3.5e-21  Score=153.02  Aligned_cols=77  Identities=12%  Similarity=0.140  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+++.|.++..++.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus       145 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  223 (271)
T PRK13638        145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV  223 (271)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            33477999999999999  999999999999999998876688999999999999999999999999999999987664

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.79  E-value=8.6e-21  Score=156.09  Aligned_cols=79  Identities=16%  Similarity=0.177  Sum_probs=72.5

Q ss_pred             CCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCc
Q 027703          137 VSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMM  213 (220)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~  213 (220)
                      +....+++++.++++.++|  +|++|+....++.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++
T Consensus       171 QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~  250 (382)
T TIGR03415       171 QRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPE  250 (382)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence            3344588999999999999  9999999999999999998776 899999999999999999999999999999999987


Q ss_pred             cc
Q 027703          214 DF  215 (220)
Q Consensus       214 ~~  215 (220)
                      ++
T Consensus       251 ei  252 (382)
T TIGR03415       251 EI  252 (382)
T ss_pred             HH
Confidence            75

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.79  E-value=1.6e-19  Score=148.20  Aligned_cols=178  Identities=17%  Similarity=0.193  Sum_probs=120.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh--hhhhHHh------hcCCc
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF--RAVTSAY------YRGAV   88 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~--~~~~~~~------~~~~~   88 (220)
                      -+++|+||+|||||++.|.|.           +.++.+.+.++|+.+.+.   -|....-  ..+..+.      +..++
T Consensus        33 HaLLGENGAGKSTLm~iL~G~-----------~~P~~GeI~v~G~~v~~~---sP~dA~~~GIGMVhQHF~Lv~~lTV~E   98 (501)
T COG3845          33 HALLGENGAGKSTLMKILFGL-----------YQPDSGEIRVDGKEVRIK---SPRDAIRLGIGMVHQHFMLVPTLTVAE   98 (501)
T ss_pred             EEEeccCCCCHHHHHHHHhCc-----------ccCCcceEEECCEEeccC---CHHHHHHcCCcEEeeccccccccchhh
Confidence            489999999999999999999           444678888888766532   2210000  0000111      11111


Q ss_pred             EEEEEEeCC--CcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCC
Q 027703           89 GALVVYDIT--RRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTN  163 (220)
Q Consensus        89 ~~i~v~d~~--~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~  163 (220)
                      -+++-....  ..-........+.++..... +-.|--.+   .||+-..++.+|..+++.+++++.++|  ||-++|..
T Consensus        99 NiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V---~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E  175 (501)
T COG3845          99 NIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV---ADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE  175 (501)
T ss_pred             hhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee---ecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            111111110  01133444444444433221 11111112   566655667788899999999999999  99999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCC
Q 027703          164 VEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS  211 (220)
Q Consensus       164 v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~  211 (220)
                      ++++|+.+.++..++++++++||.+++++.+|||+.||++|+++...+
T Consensus       176 ~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         176 ADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence            999999999999999999999999999999999999999999877666

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=8.4e-18  Score=143.16  Aligned_cols=153  Identities=21%  Similarity=0.221  Sum_probs=106.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcch--------hhhhhHHhh
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER--------FRAVTSAYY   84 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~   84 (220)
                      ..+|+|+|.+|||||||+|+|.+..+.. ...++.+.+...+.+.+.+.  .+.+|||+|...        +......++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            4789999999999999999999876432 33344455555566666653  578899999752        222344567


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCC
Q 027703           85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTN  163 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  163 (220)
                      ..+|++++|+|+++..++.. ..+...+..   ...|+++++||+|+....   .+.. .+. ..++ ..+.+||+++.|
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~-~~~-~~g~~~~~~iSA~~g~g  186 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAA-ALW-SLGLGEPHPVSALHGRG  186 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhH-HHH-hcCCCCeEEEEcCCCCC
Confidence            89999999999998766543 233333432   358999999999985321   1111 221 2222 346899999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027703          164 VEAAFEVVIREIYS  177 (220)
Q Consensus       164 v~~l~~~l~~~~~~  177 (220)
                      +.++++++.+.+.+
T Consensus       187 i~eL~~~i~~~l~~  200 (472)
T PRK03003        187 VGDLLDAVLAALPE  200 (472)
T ss_pred             cHHHHHHHHhhccc
Confidence            99999999987744

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=1e-17  Score=138.53  Aligned_cols=162  Identities=20%  Similarity=0.117  Sum_probs=114.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh-------hhhhHHhhcCC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF-------RAVTSAYYRGA   87 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~-------~~~~~~~~~~~   87 (220)
                      ..|+++|.||||||||+|+|++........+..+..+..+.+.+.+ ...+.++|+||....       .......+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            4799999999999999999998765333334444555666666543 235789999997531       12223456789


Q ss_pred             cEEEEEEeCC---CcccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC--CeEEEeccCC
Q 027703           88 VGALVVYDIT---RRSSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG--LFFMETSALD  160 (220)
Q Consensus        88 ~~~i~v~d~~---~~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  160 (220)
                      +++++|+|++   +...++....|+.++..+..  ...|.++++||+|+.....+ .+....+....+  ..++.+||++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence            9999999987   44567777777777665432  35789999999998643221 222333333333  4688999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREIYSN  178 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~~  178 (220)
                      +.++++++++|.+.+.++
T Consensus       318 g~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        318 GLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CcCHHHHHHHHHHHhhhC
Confidence            999999999999988764

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.79  E-value=7.2e-20  Score=140.54  Aligned_cols=175  Identities=18%  Similarity=0.245  Sum_probs=118.2

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCc---chhhhhhHHhhcCCcEEE--
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ---ERFRAVTSAYYRGAVGAL--   91 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~---~~~~~~~~~~~~~~~~~i--   91 (220)
                      .++.|++|+|||||+|+|.|..-|           +.+.+..+|...    .|....   +......-..+++|..+-  
T Consensus        27 TAlFG~SGsGKTslin~IaGL~rP-----------deG~I~lngr~L----~Ds~k~i~lp~~~RriGYVFQDARLFpH~   91 (352)
T COG4148          27 TALFGPSGSGKTSLINMIAGLTRP-----------DEGRIELNGRVL----VDAEKGIFLPPEKRRIGYVFQDARLFPHY   91 (352)
T ss_pred             EEEecCCCCChhhHHHHHhccCCc-----------cccEEEECCEEe----ecccCCcccChhhheeeeEeeccccccce
Confidence            589999999999999999999544           455555555321    122210   011111111112221110  


Q ss_pred             -----EEEe--CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCC
Q 027703           92 -----VVYD--ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDST  162 (220)
Q Consensus        92 -----~v~d--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~  162 (220)
                           +.|-  ......|+.+-.++. +.......+..++.|.|+.++.        ++++...|.+.++|  .|++|-.
T Consensus        92 tVrgNL~YG~~~~~~~~fd~iv~lLG-I~hLL~R~P~~LSGGEkQRVAI--------GRALLt~P~LLLmDEPLaSLD~~  162 (352)
T COG4148          92 TVRGNLRYGMWKSMRAQFDQLVALLG-IEHLLDRYPGTLSGGEKQRVAI--------GRALLTAPELLLMDEPLASLDLP  162 (352)
T ss_pred             EEecchhhhhcccchHhHHHHHHHhC-cHHHHhhCCCccCcchhhHHHH--------HHHHhcCCCeeeecCchhhcccc
Confidence                 0111  112345555544322 2222222344467788877655        45999999999999  9999999


Q ss_pred             CHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          163 NVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       163 ~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      --.+++-++-++..+ +.-++++||+++++.++||++++|++|++...|..+++
T Consensus       163 RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v  216 (352)
T COG4148         163 RKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV  216 (352)
T ss_pred             hhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHH
Confidence            999999999999988 88899999999999999999999999999999998775

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=5.3e-21  Score=152.77  Aligned_cols=77  Identities=16%  Similarity=0.232  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.+|++.++|  ++++|..+...+++.+.++..+ +.+++++||+++++..+||++++|++|++++.|+++++
T Consensus       150 l~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~  229 (283)
T PRK13636        150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV  229 (283)
T ss_pred             HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            33478999999999999  9999999999999999988876 89999999999999999999999999999999998764

>cd01894 EngA1 EngA1 subfamily

Probab=99.79  E-value=5.7e-18  Score=123.36  Aligned_cols=145  Identities=18%  Similarity=0.110  Sum_probs=98.2

Q ss_pred             EEECCCCCcHHHHHHHHhhCcC--CCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh--------hhHHhhcCC
Q 027703           18 VLIGDSAVGKSNLLSRFARNEF--DSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------VTSAYYRGA   87 (220)
Q Consensus        18 ~ilG~~g~GKSTll~~l~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~   87 (220)
                      +++|.+|||||||+++|.+...  .... +..+.+........++  ..+.+||+||......        .....+..+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDT-PGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCC-CCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            5899999999999999998742  2222 2223333334444444  5788999999876432        334567889


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVEA  166 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~  166 (220)
                      |++++++|..+..+.... .....+..   ...|+++++||.|+......     .......+. .++++|++++.|+++
T Consensus        78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~  148 (157)
T cd01894          78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGD  148 (157)
T ss_pred             CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHH
Confidence            999999999775544332 12222322   24899999999998653321     223334455 688999999999999


Q ss_pred             HHHHHHHH
Q 027703          167 AFEVVIRE  174 (220)
Q Consensus       167 l~~~l~~~  174 (220)
                      +++++.+.
T Consensus       149 l~~~l~~~  156 (157)
T cd01894         149 LLDAILEL  156 (157)
T ss_pred             HHHHHHhh
Confidence            99999864

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.79  E-value=6.6e-20  Score=143.53  Aligned_cols=77  Identities=16%  Similarity=0.199  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (243)
T TIGR02315       154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL  233 (243)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence            34477999999999999  9999999999999999988765 78999999999999999999999999999999998765

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.79  E-value=1.6e-20  Score=151.42  Aligned_cols=77  Identities=14%  Similarity=0.199  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.+|++.++|  ++++|+.+...+.+.+.++..++.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus       144 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  222 (303)
T TIGR01288       144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHAL  222 (303)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            34477999999999999  999999999999999998876689999999999999999999999999999999998765

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.79  E-value=8.5e-21  Score=147.85  Aligned_cols=77  Identities=16%  Similarity=0.231  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       145 v~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  224 (235)
T cd03261         145 VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL  224 (235)
T ss_pred             HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence            34478999999999999  9999999999999999988775 78999999999999999999999999999999987765

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.79  E-value=3.6e-20  Score=143.81  Aligned_cols=77  Identities=16%  Similarity=0.279  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|++.++
T Consensus       123 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence            33477999999999999  9999999999999999988776 78999999999999999999999999999999987554

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=8.3e-21  Score=151.24  Aligned_cols=78  Identities=10%  Similarity=0.133  Sum_probs=71.4

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      ....+++++.++++.++|  ++++|..+...+++.+.++..+ +.+++++||+++++..+||++++|++|+++..|++++
T Consensus       145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~  224 (277)
T PRK13652        145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEE  224 (277)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHH
Confidence            344478999999999999  9999999999999999988876 8999999999999999999999999999999999877


Q ss_pred             c
Q 027703          215 F  215 (220)
Q Consensus       215 ~  215 (220)
                      +
T Consensus       225 ~  225 (277)
T PRK13652        225 I  225 (277)
T ss_pred             H
Confidence            5

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=7.1e-21  Score=152.35  Aligned_cols=77  Identities=17%  Similarity=0.102  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.+.++..++.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus       153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~  231 (288)
T PRK13643        153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV  231 (288)
T ss_pred             HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            33478999999999999  999999999999998887766689999999999999999999999999999999998775

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=2.2e-20  Score=154.00  Aligned_cols=77  Identities=17%  Similarity=0.226  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.+|++.++|  +|++|.....++.+.+.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus       158 VaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~  237 (377)
T PRK11607        158 VALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI  237 (377)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHH
Confidence            34478999999999999  9999999999999999988876 89999999999999999999999999999999998775

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.78  E-value=9.7e-20  Score=134.68  Aligned_cols=175  Identities=18%  Similarity=0.226  Sum_probs=115.7

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeC
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDI   96 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~   96 (220)
                      ++|+||||+|||||++.|+|.           ..+..+.+.+++...  ..|-.    .........+.+...+-|-|.+
T Consensus        30 ~ailGPNGAGKSTlLk~LsGe-----------l~p~~G~v~~~g~~l--~~~~~----~~lA~~raVlpQ~s~laFpFtv   92 (259)
T COG4559          30 LAILGPNGAGKSTLLKALSGE-----------LSPDSGEVTLNGVPL--NSWPP----EELARHRAVLPQNSSLAFPFTV   92 (259)
T ss_pred             EEEECCCCccHHHHHHHhhCc-----------cCCCCCeEeeCCcCh--hhCCH----HHHHHHhhhcccCcccccceEH
Confidence            689999999999999999998           444566676766332  11111    1112233344444444443332


Q ss_pred             CC------------cc--cHHH-HHHHHHH--HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC------CeE
Q 027703           97 TR------------RS--SFDS-VKRWLEE--LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG------LFF  153 (220)
Q Consensus        97 ~~------------~~--~~~~-~~~~~~~--l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~------~~~  153 (220)
                      .+            ..  .-.. ....+..  +..........++.|.++.+..        ++.+++-+.      +.+
T Consensus        93 ~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVql--------ARvLaQl~~~v~~~r~L~  164 (259)
T COG4559          93 QEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQL--------ARVLAQLWPPVPSGRWLF  164 (259)
T ss_pred             HHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHH--------HHHHHHccCCCCCCceEE
Confidence            11            01  1111 1122221  2222223344455555555433        457777653      458


Q ss_pred             EE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          154 ME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       154 ~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      +|  ||++|..-....+..+.+...++..++.+-||++.+..||||+++|.+||++..|+|+++.
T Consensus       165 LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl  229 (259)
T COG4559         165 LDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL  229 (259)
T ss_pred             ecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence            88  9999999999999999999999999999999999999999999999999999999998864

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=8.2e-21  Score=151.90  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       154 v~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~  233 (286)
T PRK13646        154 IAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL  233 (286)
T ss_pred             HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            34488999999999999  9999999999999999988765 89999999999999999999999999999999988764

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=4.9e-21  Score=153.23  Aligned_cols=77  Identities=9%  Similarity=0.112  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.+|++.++|  ++++|..+...+.+.+.++..++.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus       154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  232 (287)
T PRK13641        154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI  232 (287)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            33477999999999999  999999999999999988765689999999999999999999999999999999987764

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=9.4e-21  Score=153.38  Aligned_cols=77  Identities=13%  Similarity=0.191  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  +|++|..+...+++.+.++..++.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus       185 vaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~  263 (320)
T PRK13631        185 VAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI  263 (320)
T ss_pred             HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            34488999999999999  999999999999999988876689999999999999999999999999999999998754

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.78  E-value=8.2e-20  Score=142.82  Aligned_cols=77  Identities=17%  Similarity=0.215  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       153 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  232 (241)
T cd03256         153 VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL  232 (241)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence            33477999999999999  9999999999999999988765 78999999999999999999999999999999988764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=3.4e-21  Score=157.51  Aligned_cols=77  Identities=16%  Similarity=0.278  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.+|++.++|  +|++|+.+...+++.|.++..+ +.+++++||+++++..+||++++|++|++++.|+++++
T Consensus       149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~  228 (343)
T PRK11153        149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV  228 (343)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            34477999999999999  9999999999999999988776 79999999999999999999999999999999987765

>PRK00089 era GTPase Era; Reviewed

Probab=99.78  E-value=1.2e-17  Score=134.25  Aligned_cols=158  Identities=20%  Similarity=0.178  Sum_probs=103.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh--------hhhHHhhcC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR--------AVTSAYYRG   86 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~~   86 (220)
                      -.|+++|++|||||||+|+|.+..+...+..+.+.+.....+... ...++.++||||.....        ......+..
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~   84 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD   84 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence            459999999999999999999987655444333332222222222 23688999999975322        223345688


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCHH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-GLFFMETSALDSTNVE  165 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~  165 (220)
                      +|++++++|+++...... ...+..+.   ....|+++++||.|+.............+.... ...++.+||+++.|+.
T Consensus        85 ~D~il~vvd~~~~~~~~~-~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~  160 (292)
T PRK00089         85 VDLVLFVVDADEKIGPGD-EFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVD  160 (292)
T ss_pred             CCEEEEEEeCCCCCChhH-HHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHH
Confidence            999999999987322211 12222222   235799999999998632222222333443333 3578899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          166 AAFEVVIREIYS  177 (220)
Q Consensus       166 ~l~~~l~~~~~~  177 (220)
                      ++++++.+.+.+
T Consensus       161 ~L~~~L~~~l~~  172 (292)
T PRK00089        161 ELLDVIAKYLPE  172 (292)
T ss_pred             HHHHHHHHhCCC
Confidence            999999988754

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.78  E-value=4e-20  Score=142.85  Aligned_cols=77  Identities=16%  Similarity=0.229  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.+.++...+.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (222)
T cd03224         141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL  219 (222)
T ss_pred             HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence            44477999999999999  999999999999999988766678999999999999999999999999999999887654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.78  E-value=7.3e-20  Score=150.38  Aligned_cols=77  Identities=18%  Similarity=0.256  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       140 valAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  219 (354)
T TIGR02142       140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV  219 (354)
T ss_pred             HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence            44477999999999999  9999999999999999998876 78999999999999999999999999999999988765

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.78  E-value=6.4e-20  Score=143.24  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      ....+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|++|+++..|++++
T Consensus       144 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  223 (239)
T cd03296         144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDE  223 (239)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence            344477999999999999  9999999999999999988876 7899999999999999999999999999999999876


Q ss_pred             c
Q 027703          215 F  215 (220)
Q Consensus       215 ~  215 (220)
                      +
T Consensus       224 ~  224 (239)
T cd03296         224 V  224 (239)
T ss_pred             H
Confidence            5

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04163 Era Era subfamily

Probab=99.78  E-value=2.1e-17  Score=121.17  Aligned_cols=156  Identities=20%  Similarity=0.151  Sum_probs=100.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh--------hhHHhhc
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------VTSAYYR   85 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~   85 (220)
                      ..+|+++|++|||||||++++.+..+................. .......+.+||++|......        .......
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999886543332222111111111 222346788999999753221        2344578


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCH
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-GLFFMETSALDSTNV  164 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v  164 (220)
                      .++++++|+|.+++..... ..+...+...   ..|+++++||.|+........+....+.... ..+++.+|++++.++
T Consensus        82 ~~d~i~~v~d~~~~~~~~~-~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGEGD-EFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCchH-HHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            8999999999988622211 1222223222   4788999999998642222222233333333 367899999999999


Q ss_pred             HHHHHHHHHH
Q 027703          165 EAAFEVVIRE  174 (220)
Q Consensus       165 ~~l~~~l~~~  174 (220)
                      ++++++|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.78  E-value=4.6e-20  Score=143.54  Aligned_cols=78  Identities=14%  Similarity=0.251  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.+.++..+ +.+++++||+++.+..+||++++|++|++++.|+++++
T Consensus       149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (233)
T cd03258         149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV  228 (233)
T ss_pred             HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            33477999999999999  9999999999999999998776 89999999999999999999999999999999988765


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       229 ~  229 (233)
T cd03258         229 F  229 (233)
T ss_pred             h
Confidence            3

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.78  E-value=5.9e-20  Score=150.73  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  +|++|......+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       137 valaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i  216 (352)
T PRK11144        137 VAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV  216 (352)
T ss_pred             HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence            44477999999999999  9999999999999999988876 78999999999999999999999999999999998775


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       217 ~  217 (352)
T PRK11144        217 W  217 (352)
T ss_pred             H
Confidence            3

>cd01895 EngA2 EngA2 subfamily

Probab=99.78  E-value=3.8e-17  Score=120.74  Aligned_cols=155  Identities=25%  Similarity=0.179  Sum_probs=102.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCC-cccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-----------hhH
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNS-KATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-----------VTS   81 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~-~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-----------~~~   81 (220)
                      .++|+++|.+|+|||||+++|.+..+.... .++.+.......+...+.  .+.+||++|......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            378999999999999999999987643222 222223333344445543  467899999643211           112


Q ss_pred             HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-HHh----CCeEEEe
Q 027703           82 AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-EEE----GLFFMET  156 (220)
Q Consensus        82 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-~~~----~~~~~~~  156 (220)
                      ..+..+|.+++|+|.+++.+..... ++..+..   ...|+++++||.|+........+...+.. ...    ..+++.+
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            3457899999999999887765542 2222222   24789999999998754322233222222 222    3678999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 027703          157 SALDSTNVEAAFEVVIRE  174 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~  174 (220)
                      |++++.|+.++++.+.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999988764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.77  E-value=1.2e-19  Score=143.06  Aligned_cols=77  Identities=17%  Similarity=0.211  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++..++.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus       146 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  224 (256)
T TIGR03873       146 VHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV  224 (256)
T ss_pred             HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence            34477999999999999  999999999999999998876678999999999999999999999999999999988764

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=1.2e-19  Score=143.03  Aligned_cols=77  Identities=12%  Similarity=0.134  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.|.++..++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  225 (255)
T PRK11231        147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV  225 (255)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence            34477999999999999  999999999999999988766688999999999999999999999999999999887764

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.77  E-value=2.9e-17  Score=142.57  Aligned_cols=157  Identities=22%  Similarity=0.250  Sum_probs=113.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCc-------CCCCCc--------ccceeeeeEEEEEe---CCeEEEEEEEecCCcch
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNE-------FDSNSK--------ATIGVEFQTQVVDI---DGKEVKAQIWDTAGQER   75 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~-------~~~~~~--------~t~~~~~~~~~i~~---~~~~~~~~~~d~~g~~~   75 (220)
                      .-+++++|..++|||||+++|+...       +...+.        ..+++......+.+   ++..+.+++|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4479999999999999999998752       222111        12222222223333   45668999999999999


Q ss_pred             hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC---e
Q 027703           76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL---F  152 (220)
Q Consensus        76 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~---~  152 (220)
                      +...+..++..+|++++|+|+++..+.+....|+..+.    ...|+++++||.|+....  .......+....++   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            98888899999999999999999877777666554332    357899999999986432  12223344444444   4


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHH
Q 027703          153 FMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       153 ~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      ++.+||+++.|+.+++++|.+.+.
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhCC
Confidence            788999999999999999988764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.8e-19  Score=142.77  Aligned_cols=77  Identities=14%  Similarity=0.167  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.|.++..+ +.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus       152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  231 (265)
T PRK10253        152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI  231 (265)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            44477999999999999  9999999999999999988775 78999999999999999999999999999999988764

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.77  E-value=5.5e-17  Score=137.02  Aligned_cols=159  Identities=24%  Similarity=0.183  Sum_probs=108.2

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh-----------
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV-----------   79 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~-----------   79 (220)
                      ...++++++|.+|+|||||+++|++..... ...+..+.+.....+..++.  .+.+|||+|..+....           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            456899999999999999999999876432 22233334444445555553  6788999996433221           


Q ss_pred             hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-H----hCCeEE
Q 027703           80 TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-E----EGLFFM  154 (220)
Q Consensus        80 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-~----~~~~~~  154 (220)
                      ....++.+|++++|+|+++..+..... ++..+..   ...|+++++||+|+.. .....++....+. .    ..++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCceE
Confidence            124678899999999999887776653 3333322   3578999999999862 1111222222222 1    246889


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHH
Q 027703          155 ETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       155 ~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      ++||+++.|+.++++++.+....
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999987654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>COG1159 Era GTPase [General function prediction only]

Probab=99.77  E-value=8.5e-18  Score=130.66  Aligned_cols=159  Identities=19%  Similarity=0.125  Sum_probs=114.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh--------hhhHHhhcC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR--------AVTSAYYRG   86 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~~   86 (220)
                      --|+|+|+|+||||||+|+|.|....-.++..++++.....+...+ +.++.|.||||.....        ......+..
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d   85 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSALKD   85 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc
Confidence            3589999999999999999999999998888888777766665554 5688999999975432        234456788


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-hCCeEEEeccCCCCCHH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVE  165 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~  165 (220)
                      +|.++|+.|++....-  ..+++.+..+.  .+.|++++.||.|..............+... +...++.+||+.+.|+.
T Consensus        86 vDlilfvvd~~~~~~~--~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~  161 (298)
T COG1159          86 VDLILFVVDADEGWGP--GDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVD  161 (298)
T ss_pred             CcEEEEEEeccccCCc--cHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHH
Confidence            9999999999874433  22333332222  3579999999999765443111112122222 22367889999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027703          166 AAFEVVIREIYSN  178 (220)
Q Consensus       166 ~l~~~l~~~~~~~  178 (220)
                      .+.+.+...+.++
T Consensus       162 ~L~~~i~~~Lpeg  174 (298)
T COG1159         162 TLLEIIKEYLPEG  174 (298)
T ss_pred             HHHHHHHHhCCCC
Confidence            9999999888654

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.77  E-value=1.4e-20  Score=146.31  Aligned_cols=77  Identities=12%  Similarity=0.207  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       142 l~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  220 (232)
T cd03218         142 VEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI  220 (232)
T ss_pred             HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence            33477999999999999  999999999999999988776688999999999999999999999999999999987664

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.77  E-value=6.5e-20  Score=140.83  Aligned_cols=72  Identities=22%  Similarity=0.266  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|
T Consensus       139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            34477999999999999  9999999999999999988775 789999999999999999999999999988765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=4.5e-20  Score=152.85  Aligned_cols=77  Identities=16%  Similarity=0.191  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  +|++|+.+..++.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       173 v~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l  252 (400)
T PRK10070        173 VGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI  252 (400)
T ss_pred             HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHH
Confidence            44477999999999999  9999999999999999988765 78999999999999999999999999999999987765

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=2.1e-20  Score=149.85  Aligned_cols=77  Identities=14%  Similarity=0.151  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.|.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  238 (289)
T PRK13645        159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI  238 (289)
T ss_pred             HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            33488999999999999  9999999999999999988765 78999999999999999999999999999999987654

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=4.9e-20  Score=149.63  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  |+++|..+..++++.|.++..+ +.+++++|||+..+..+||++++|++|++++.|+++++
T Consensus       163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~  242 (327)
T PRK11308        163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI  242 (327)
T ss_pred             HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            34488999999999999  9999999999999999988876 89999999999999999999999999999999987765

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=1e-16  Score=115.95  Aligned_cols=162  Identities=23%  Similarity=0.351  Sum_probs=127.3

Q ss_pred             CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCC--------CCCc--ccceeeeeEEEEEeCCeEEEEEEEecCCcchh
Q 027703            7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFD--------SNSK--ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF   76 (220)
Q Consensus         7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~--------~~~~--~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~   76 (220)
                      +...+....||+|.|+-++||||+++.+......        .++.  +..++..+.+.+.+++. ..+.++++||+.++
T Consensus         3 ~~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF   81 (187)
T COG2229           3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERF   81 (187)
T ss_pred             cccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHH
Confidence            3445666789999999999999999999888631        1222  22445666677766653 35677999999999


Q ss_pred             hhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh--CCeEE
Q 027703           77 RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE--GLFFM  154 (220)
Q Consensus        77 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~--~~~~~  154 (220)
                      ...|..+.+.+.+.++++|.+....+ ...+.+..+....  ++|+++..||+||..  ..+.++.+.++..+  .++.+
T Consensus        82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi  156 (187)
T COG2229          82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVI  156 (187)
T ss_pred             HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCcee
Confidence            99999999999999999999999988 5555556655443  289999999999986  55777777777766  78999


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 027703          155 ETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus       155 ~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      ..++.++.+..+.++.+...
T Consensus       157 ~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         157 EIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeecccchhHHHHHHHHHhh
Confidence            99999999999998877655

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.77  E-value=3.6e-20  Score=149.19  Aligned_cols=77  Identities=13%  Similarity=0.179  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..-+++++.+|++.++|  ++++|+.+...+++.+.++.. +.+++++||+++++..+||++++|++|+++..|+++++.
T Consensus       142 v~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~  220 (301)
T TIGR03522       142 VGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS  220 (301)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            44477999999999999  999999999999998887754 689999999999999999999999999999999988763

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.77  E-value=6.1e-20  Score=143.13  Aligned_cols=78  Identities=18%  Similarity=0.258  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..-+++++.++++.++|  ++++|..+...+++.+.++..++.+++++||+++++..+||++++|++|+++..|+++++.
T Consensus       152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  231 (236)
T cd03219         152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR  231 (236)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence            33477999999999999  9999999999999999888766789999999999999999999999999999999987753

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.77  E-value=2.3e-19  Score=137.02  Aligned_cols=69  Identities=23%  Similarity=0.215  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANS  207 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~  207 (220)
                      ..-+++++.++++.++|  ++++|+.+...+.+.+.++..++.+++++||+++++..+||++++|++|+++
T Consensus       135 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         135 LAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             HHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            34477999999999999  9999999999999999888766889999999999999999999999999875

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.77  E-value=3.8e-20  Score=143.48  Aligned_cols=76  Identities=17%  Similarity=0.221  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.|.++..+ .+++++||+++++..+||++++|++|+++..|+++++
T Consensus       150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (227)
T cd03260         150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI  227 (227)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence            34477999999999999  9999999999999999988776 8999999999999999999999999999999998764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.77  E-value=4.1e-18  Score=117.57  Aligned_cols=160  Identities=25%  Similarity=0.322  Sum_probs=121.9

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ...+|+.++|-.++|||||++.|.+...... .||.++.  ...+.+++ .+.+++||.+|+..-+..|.+||.+.|++|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~hl-tpT~GFn--~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHL-TPTNGFN--TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhhc-cccCCcc--eEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence            5569999999999999999999988754332 3454443  34454543 589999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHH----HHHHHhCCeEEEeccCCCCCHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGK----SLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      ||.|++++..|+++.+.+.++.... ....|+++-.||+|+..+... .++++    +.++...+.+-++|++.+.++..
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~-eeia~klnl~~lrdRswhIq~csals~eg~~d  169 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV-EEIALKLNLAGLRDRSWHIQECSALSLEGSTD  169 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch-HHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence            9999999999999888777765433 356899999999998653321 22221    22333445677799999999999


Q ss_pred             HHHHHHHHHH
Q 027703          167 AFEVVIREIY  176 (220)
Q Consensus       167 l~~~l~~~~~  176 (220)
                      -.+|+.....
T Consensus       170 g~~wv~sn~~  179 (185)
T KOG0074|consen  170 GSDWVQSNPE  179 (185)
T ss_pred             cchhhhcCCC
Confidence            9998875443

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.77  E-value=3e-20  Score=140.96  Aligned_cols=67  Identities=19%  Similarity=0.246  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGAN  206 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~  206 (220)
                      +..|++++.+|++.+.|  |+++|..+-+++++.+.++..+ +.+++++|||...|. +|||++.|+||++
T Consensus       151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~  220 (226)
T COG1136         151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI  220 (226)
T ss_pred             HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence            44577999999999999  9999999999999999999887 899999999999988 8999999999983

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=2.7e-20  Score=145.18  Aligned_cols=77  Identities=12%  Similarity=0.187  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       146 l~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  224 (237)
T PRK11614        146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDAL  224 (237)
T ss_pred             HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence            44477999999999999  999999999999999988776689999999999999999999999999999999998765

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.77  E-value=1.8e-17  Score=126.29  Aligned_cols=159  Identities=21%  Similarity=0.186  Sum_probs=98.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCC-CCc--ccceeeeeEEEEEeC---------------------------C----
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDS-NSK--ATIGVEFQTQVVDID---------------------------G----   60 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~--~t~~~~~~~~~i~~~---------------------------~----   60 (220)
                      ++|+++|.+|+|||||+++|.+..... ..+  ...+.......+.+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            478999999999999999998763211 111  111111110011110                           1    


Q ss_pred             eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--C
Q 027703           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--S  138 (220)
Q Consensus        61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~  138 (220)
                      ....+.|||+||+..+..........+|++++|+|++++.........+..+...  ...|+++++||.|+......  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1157889999999888777777778899999999998742111111222222221  22468889999998642111  1


Q ss_pred             HHHHHHHHHH---hCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703          139 TEEGKSLAEE---EGLFFMETSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       139 ~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                      .++...+...   ..++++.+||+++.|++++++++.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            1223333332   256789999999999999999998754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=2.1e-19  Score=142.34  Aligned_cols=78  Identities=15%  Similarity=0.178  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      ...-+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|++++
T Consensus       155 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~  234 (265)
T PRK10575        155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE  234 (265)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence            344477999999999999  9999999999999999988776 7999999999999999999999999999999998766


Q ss_pred             c
Q 027703          215 F  215 (220)
Q Consensus       215 ~  215 (220)
                      +
T Consensus       235 ~  235 (265)
T PRK10575        235 L  235 (265)
T ss_pred             h
Confidence            4

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.77  E-value=2.8e-19  Score=140.60  Aligned_cols=86  Identities=16%  Similarity=0.157  Sum_probs=75.8

Q ss_pred             EEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceee
Q 027703          123 MLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVT  199 (220)
Q Consensus       123 ~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~  199 (220)
                      ++.|.++.+.        .|-+++.+|++.+.|  |+|+|-....++++.+.++..+ +.+++++|||+..+.++||||+
T Consensus       154 lSGGMrQRV~--------IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~  225 (316)
T COG0444         154 LSGGMRQRVM--------IAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVA  225 (316)
T ss_pred             cCCcHHHHHH--------HHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEE
Confidence            4555555543        355899999999999  9999999999999999999986 8999999999999999999999


Q ss_pred             eeecCCCCCCCCCcccc
Q 027703          200 LVKDGANSSKGSMMDFS  216 (220)
Q Consensus       200 ~~~~G~~~~~g~~~~~~  216 (220)
                      ||..|+|++.|+++++.
T Consensus       226 VMYaG~iVE~g~~~~i~  242 (316)
T COG0444         226 VMYAGRIVEEGPVEEIF  242 (316)
T ss_pred             EEECcEEEEeCCHHHHh
Confidence            99999999999998764

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.76  E-value=5e-20  Score=149.71  Aligned_cols=77  Identities=14%  Similarity=0.170  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  +|++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       109 valaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~  188 (325)
T TIGR01187       109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI  188 (325)
T ss_pred             HHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            44477999999999999  9999999999999999988876 89999999999999999999999999999999998775

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=3.4e-20  Score=150.56  Aligned_cols=77  Identities=17%  Similarity=0.215  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  +|++|..+..++++.|.++..+ +.+++++|||+..+..+||++++|++|++++.|+++++
T Consensus       162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~  241 (326)
T PRK11022        162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI  241 (326)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            33488999999999999  9999999999999999998875 89999999999999999999999999999999998765

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.76  E-value=7.5e-20  Score=141.16  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++.. +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       142 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         142 LSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             HHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            34477999999999999  999999999999998888765 58999999999999999999999999999999998765

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.76  E-value=1.6e-19  Score=139.50  Aligned_cols=77  Identities=18%  Similarity=0.244  Sum_probs=69.7

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ....+++++.++++.++|  ++++|..+...+.+.+.++..++.+++++||+++++..+||+++++ +|+++..|+++++
T Consensus       121 rv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~  199 (223)
T TIGR03771       121 RVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQL  199 (223)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence            344477999999999999  9999999999999999987766889999999999999999999999 8999999988765

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.76  E-value=5e-20  Score=141.45  Aligned_cols=72  Identities=19%  Similarity=0.263  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|++++.|
T Consensus       139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            34477999999999999  9999999999999999988875 789999999999999999999999999998765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.76  E-value=1.2e-19  Score=140.06  Aligned_cols=74  Identities=18%  Similarity=0.214  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeee--cCCCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVK--DGANSSKGSM  212 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~--~G~~~~~g~~  212 (220)
                      ..-+++++.++++.++|  ++++|..+...+++.+.++..+ +.+++++||+++++..+||++++|+  +|++++++++
T Consensus       140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence            34477999999999999  9999999999999999988765 7899999999999999999999999  7999888765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.76  E-value=6e-20  Score=149.27  Aligned_cols=77  Identities=17%  Similarity=0.149  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.++++.++|  +|++|..+..++++.|.++..+ +.+++++|||++.+..+||++++|++|++++.|+++++
T Consensus       170 v~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i  249 (331)
T PRK15079        170 IGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV  249 (331)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            44488999999999999  9999999999999999988776 89999999999999999999999999999999998765

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.76  E-value=4.4e-20  Score=144.28  Aligned_cols=77  Identities=18%  Similarity=0.234  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  223 (240)
T PRK09493        145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL  223 (240)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence            44478999999999999  999999999999999888766689999999999999999999999999999999987765

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=3.5e-20  Score=147.74  Aligned_cols=76  Identities=14%  Similarity=0.177  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.+.++..+ +.+++++||+++.+. +||++++|++|+++.+|+++++
T Consensus       149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~  227 (279)
T PRK13650        149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPREL  227 (279)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence            44488999999999999  9999999999999999998876 899999999999985 7999999999999999988764

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.76  E-value=2.9e-20  Score=144.38  Aligned_cols=78  Identities=12%  Similarity=0.144  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+..++.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence            33477999999999999  9999999999999999988775 78999999999999999999999999999999998776


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       220 ~  220 (230)
T TIGR03410       220 D  220 (230)
T ss_pred             C
Confidence            4

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.76  E-value=5.9e-19  Score=135.29  Aligned_cols=73  Identities=14%  Similarity=0.274  Sum_probs=65.8

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ....+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|
T Consensus       136 rv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence            344477999999999999  9999999999999999988765 789999999999999999999999999987654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.76  E-value=2.1e-19  Score=138.02  Aligned_cols=71  Identities=15%  Similarity=0.218  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++| +++.|
T Consensus       141 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         141 VLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence            44477999999999999  9999999999999999988767889999999999999999999999986 66554

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.76  E-value=5.9e-17  Score=140.11  Aligned_cols=153  Identities=15%  Similarity=0.180  Sum_probs=109.8

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      .-.+|+++|.+++|||||+++|.+..+.....++++.......+.+++. ..+.||||||+..|...+...+..+|++++
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            3478999999999999999999998877665544443333334444332 267899999999988888888899999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh---------CCeEEEeccCCCCC
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE---------GLFFMETSALDSTN  163 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~  163 (220)
                      |+|+++...-+... .+...   .....|+++++||+|+...   ..++....+...         ..+++++||+++.|
T Consensus       165 VVda~dgv~~qT~e-~i~~~---~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       165 VVAADDGVMPQTIE-AISHA---KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEECCCCCCHhHHH-HHHHH---HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            99988754333322 22222   2235789999999998642   233333333322         25789999999999


Q ss_pred             HHHHHHHHHH
Q 027703          164 VEAAFEVVIR  173 (220)
Q Consensus       164 v~~l~~~l~~  173 (220)
                      +.++++++..
T Consensus       238 I~eLl~~I~~  247 (587)
T TIGR00487       238 IDELLDMILL  247 (587)
T ss_pred             hHHHHHhhhh
Confidence            9999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.76  E-value=2.1e-19  Score=138.25  Aligned_cols=68  Identities=13%  Similarity=0.102  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGAN  206 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~  206 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|++
T Consensus       147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            33477999999999999  999999999999999988766688999999999999999999999999975

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=4.1e-20  Score=144.61  Aligned_cols=78  Identities=17%  Similarity=0.282  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+++.+|+++++.
T Consensus       150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  229 (242)
T PRK11124        150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT  229 (242)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence            34488999999999999  9999999999999988887666899999999999999999999999999999999887653

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.76  E-value=9.6e-17  Score=124.61  Aligned_cols=151  Identities=26%  Similarity=0.232  Sum_probs=102.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh-------hhhHHhhcCCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR-------AVTSAYYRGAV   88 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~~   88 (220)
                      +++++|++|||||||+++|.+........+..+..+..+.+.+++  ..+++||+||.....       .....+++.+|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            799999999999999999998864333323333455667777765  577889999974321       12345788999


Q ss_pred             EEEEEEeCCCcc-cHHHHHHHHHHH-----------------------------------------Hh------------
Q 027703           89 GALVVYDITRRS-SFDSVKRWLEEL-----------------------------------------TT------------  114 (220)
Q Consensus        89 ~~i~v~d~~~~~-~~~~~~~~~~~l-----------------------------------------~~------------  114 (220)
                      ++++|+|+++.. ....+.+.+..+                                         ..            
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999987754 333332222210                                         00            


Q ss_pred             ------------hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703          115 ------------HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       115 ------------~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                                  ......|+++++||+|+..     .+++..+...  ..++.+||.++.|++++++.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                        0012358899999999742     3444444433  3578899999999999999888754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=2.1e-20  Score=148.80  Aligned_cols=77  Identities=16%  Similarity=0.204  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+++.+.++..++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       146 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  224 (275)
T PRK13639        146 VAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV  224 (275)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            33488999999999999  999999999999999998876689999999999999999999999999999999998765

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.76  E-value=2.2e-19  Score=137.99  Aligned_cols=72  Identities=22%  Similarity=0.266  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ...+++++.+|++.++|  ++++|..+...+++.+.++..+ +.+++++||+++++..+||++++|++|+++..|
T Consensus       140 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         140 VALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            34477999999999999  9999999999999999988776 789999999999999999999999999988765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.76  E-value=6.1e-19  Score=138.84  Aligned_cols=75  Identities=16%  Similarity=0.219  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMM  213 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~  213 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|++|+++.+|+.+
T Consensus       142 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        142 VALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            34477999999999999  9999999999999999988765 789999999999999999999999999999988754

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=1.2e-19  Score=141.96  Aligned_cols=77  Identities=13%  Similarity=0.201  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  224 (241)
T PRK10895        146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI  224 (241)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence            34477999999999999  999999999999998887765688999999999999999999999999999999988764

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.76  E-value=2.9e-20  Score=147.56  Aligned_cols=77  Identities=19%  Similarity=0.223  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       169 v~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  248 (269)
T cd03294         169 VGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI  248 (269)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            34477999999999999  9999999999999999988765 78999999999999999999999999999999987765

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.75  E-value=3.5e-20  Score=142.79  Aligned_cols=72  Identities=15%  Similarity=0.158  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+++..|
T Consensus       145 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             HHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            33477999999999999  9999999999999999888666889999999999999999999999999987654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.75  E-value=9.5e-19  Score=124.37  Aligned_cols=180  Identities=18%  Similarity=0.267  Sum_probs=121.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-------hhHHhhcCC-
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-------VTSAYYRGA-   87 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~-   87 (220)
                      .++++||+|+|||||++.|.-.+.+.           ++.+.+.++  .+.|-.+++...-..       ..++|.-.. 
T Consensus        30 tlvllgpsgagkssllr~lnlle~p~-----------sg~l~ia~~--~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwph   96 (242)
T COG4161          30 TLVLLGPSGAGKSSLLRVLNLLEMPR-----------SGTLNIAGN--HFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPH   96 (242)
T ss_pred             EEEEECCCCCchHHHHHHHHHHhCCC-----------CCeEEeccc--ccccccCccHHHHHHHHHhhhhhhhhhccCch
Confidence            68999999999999999998887664           344545443  233334443211000       111111011 


Q ss_pred             --------cEEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--e
Q 027703           88 --------VGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--T  156 (220)
Q Consensus        88 --------~~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~  156 (220)
                              .+-.-|.-.++.+......++++.+.... ....|.       .+....+..+..+++++.+|.+.+||  +
T Consensus        97 ltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl-------hlsggqqqrvaiaralmmkpqvllfdept  169 (242)
T COG4161          97 LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL-------HLSGGQQQRVAIARALMMEPQVLLFDEPT  169 (242)
T ss_pred             hHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCce-------ecccchhhhHHHHHHHhcCCcEEeecCcc
Confidence                    11112333344444444444444432211 122333       12344555677888999999999999  9


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          157 SALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      .++||+-..++.+.|.++...+.+.+++||..+.+...|.+++.|++|+|+++|++.-+
T Consensus       170 aaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f  228 (242)
T COG4161         170 AALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             cccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence            99999999999999999999999999999999999999999999999999999998544

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1.8e-19  Score=140.83  Aligned_cols=77  Identities=19%  Similarity=0.282  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (241)
T PRK14250        140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDF  219 (241)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence            33477999999999999  9999999999999999988775 89999999999999999999999999999999988765

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.75  E-value=6.3e-20  Score=144.39  Aligned_cols=77  Identities=19%  Similarity=0.249  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.+.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  234 (252)
T TIGR03005       155 VAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI  234 (252)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            33488999999999999  9999999999999999988876 89999999999999999999999999999999987664

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=8e-20  Score=145.81  Aligned_cols=77  Identities=13%  Similarity=0.149  Sum_probs=69.7

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      ....+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++++.. ||++++|++|+++.+|++++
T Consensus       152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~  230 (280)
T PRK13633        152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKE  230 (280)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHH
Confidence            344488999999999999  9999999999999999988765 8999999999999986 99999999999999999876


Q ss_pred             c
Q 027703          215 F  215 (220)
Q Consensus       215 ~  215 (220)
                      +
T Consensus       231 ~  231 (280)
T PRK13633        231 I  231 (280)
T ss_pred             H
Confidence            4

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.75  E-value=3.3e-20  Score=150.80  Aligned_cols=77  Identities=17%  Similarity=0.126  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  +|++|..+..++++.|.++..+ +.+++++|||+..+..+||++++|++|++++.|+++++
T Consensus       170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i  249 (330)
T PRK09473        170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV  249 (330)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            34488999999999999  9999999999999999988876 89999999999999999999999999999999998775

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1.5e-19  Score=147.23  Aligned_cols=77  Identities=14%  Similarity=0.210  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  +|++|.....++++.|.++..+ +.+++++|||+..+..+||++++|++|++++.|+++++
T Consensus       167 v~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i  246 (330)
T PRK15093        167 VMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKEL  246 (330)
T ss_pred             HHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            34477999999999999  9999999999999999998775 89999999999999999999999999999999988765

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.75  E-value=5.1e-20  Score=143.57  Aligned_cols=76  Identities=17%  Similarity=0.202  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++.+.. ||++++|++|+++..|+++++
T Consensus       141 l~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~  219 (236)
T TIGR03864       141 VEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAEL  219 (236)
T ss_pred             HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHH
Confidence            33477999999999999  9999999999999999988754 7899999999999975 999999999999999987654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.75  E-value=4.3e-20  Score=145.16  Aligned_cols=77  Identities=16%  Similarity=0.211  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  231 (250)
T PRK11264        153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL  231 (250)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            33477999999999999  999999999999999888776688999999999999999999999999999999987664

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.75  E-value=8.1e-20  Score=140.08  Aligned_cols=67  Identities=16%  Similarity=0.224  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGA  205 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~  205 (220)
                      ..-+++++.++++.++|  ++++|..+...+++.|.++..++.+++++||+++++..+||++++|++|+
T Consensus       143 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            33477999999999999  99999999999999999887668899999999999999999999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.75  E-value=4.4e-17  Score=141.47  Aligned_cols=146  Identities=18%  Similarity=0.221  Sum_probs=109.0

Q ss_pred             CCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh------hHHhh--cCCcEEEE
Q 027703           21 GDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV------TSAYY--RGAVGALV   92 (220)
Q Consensus        21 G~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~------~~~~~--~~~~~~i~   92 (220)
                      |.+|||||||+|++.+..+.....++.+.+...+.+.+++.  .+++||+||+..+...      ...++  ..+|.++.
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999998876666677777777777777664  5689999998765432      22232  47899999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      |+|.++.+.   ...+..++.   ..+.|+++++||.|+...+.+. .+...+.+..+++++++||+++.|++++++++.
T Consensus        79 VvDat~ler---~l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchh---hHHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            999987432   112222222   2358999999999986544443 346677788899999999999999999999998


Q ss_pred             HHH
Q 027703          173 REI  175 (220)
Q Consensus       173 ~~~  175 (220)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=5.3e-19  Score=137.47  Aligned_cols=77  Identities=17%  Similarity=0.229  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       138 v~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  217 (232)
T PRK10771        138 VALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL  217 (232)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            44477999999999999  9999999999999999988765 78999999999999999999999999999999987654

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.75  E-value=4.6e-19  Score=136.51  Aligned_cols=152  Identities=17%  Similarity=0.179  Sum_probs=113.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .++++|++||||||+-+.|++..           .+..|.+.++|..+..    ..                        
T Consensus        41 ~~glVGESG~GKSTlgr~i~~L~-----------~pt~G~i~f~g~~i~~----~~------------------------   81 (268)
T COG4608          41 TLGLVGESGCGKSTLGRLILGLE-----------EPTSGEILFEGKDITK----LS------------------------   81 (268)
T ss_pred             EEEEEecCCCCHHHHHHHHHcCc-----------CCCCceEEEcCcchhh----cc------------------------
Confidence            48999999999999999999994           4467788887765311    00                        


Q ss_pred             CCCcccHHHHHHHHHHHHhh---CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTH---CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEV  170 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~  170 (220)
                        .....+.+.+.+..+...   ....+.-++.|..+        ....|++++.+|++.+.|  +|++|-....++++.
T Consensus        82 --~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ--------Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnL  151 (268)
T COG4608          82 --KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ--------RIGIARALALNPKLIVADEPVSALDVSVQAQILNL  151 (268)
T ss_pred             --hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh--------hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHH
Confidence              112223333333332210   11112223444333        345577999999999999  999999999999999


Q ss_pred             HHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          171 VIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       171 l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      +.++..+ +.+.+|++||+..+..++||++||..|++++.|..+++.
T Consensus       152 L~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~  198 (268)
T COG4608         152 LKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVF  198 (268)
T ss_pred             HHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHh
Confidence            9998877 899999999999999999999999999999999988764

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=5.7e-20  Score=146.50  Aligned_cols=77  Identities=19%  Similarity=0.247  Sum_probs=69.3

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      ....+++++.++++.++|  ++++|..+...+++.|.++..+ +.+++++||+++.+. .||++++|++|++++.|++++
T Consensus       148 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~  226 (279)
T PRK13635        148 RVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEE  226 (279)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHH
Confidence            344488999999999999  9999999999999999988876 899999999999987 599999999999999998765


Q ss_pred             c
Q 027703          215 F  215 (220)
Q Consensus       215 ~  215 (220)
                      +
T Consensus       227 ~  227 (279)
T PRK13635        227 I  227 (279)
T ss_pred             H
Confidence            4

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=5e-19  Score=139.51  Aligned_cols=77  Identities=12%  Similarity=0.235  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.+|++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       162 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  241 (255)
T PRK11300        162 LEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI  241 (255)
T ss_pred             HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHH
Confidence            34477999999999999  9999999999999999988776 78999999999999999999999999999999987764

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.75  E-value=1.4e-19  Score=141.57  Aligned_cols=77  Identities=19%  Similarity=0.221  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       144 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  223 (242)
T cd03295         144 VGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI  223 (242)
T ss_pred             HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            34478999999999999  9999999999999999988876 78999999999999999999999999999999887654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.75  E-value=5.7e-20  Score=145.03  Aligned_cols=77  Identities=18%  Similarity=0.224  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.|.++...+.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  239 (257)
T PRK10619        161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL  239 (257)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence            33488999999999999  999999999999999988776689999999999999999999999999999999987764

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=5.4e-20  Score=146.33  Aligned_cols=76  Identities=14%  Similarity=0.142  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|+.+...+++.+.++..++.+++++||+++.+. .||++++|++|+++..|+++++
T Consensus       145 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~  222 (274)
T PRK13644        145 VALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENV  222 (274)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHH
Confidence            44488999999999999  9999999999999999887766899999999999985 6999999999999999987764

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=5e-20  Score=147.10  Aligned_cols=77  Identities=14%  Similarity=0.132  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++..++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       154 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (280)
T PRK13649        154 VAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI  232 (280)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            33478999999999999  999999999999999988876688999999999999999999999999999999987654

>cd00880 Era_like Era (E

Probab=99.75  E-value=4.6e-17  Score=118.19  Aligned_cols=151  Identities=23%  Similarity=0.186  Sum_probs=102.6

Q ss_pred             EECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-------hhHHhhcCCcEE
Q 027703           19 LIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-------VTSAYYRGAVGA   90 (220)
Q Consensus        19 ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~~~~   90 (220)
                      ++|++|||||||+++|.+.... ....++.+............ ...+.+||++|......       ....++..++++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987655 23333333333333333321 35788999999764432       334577899999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHH---HHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTE---EGKSLAEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      ++++|..+........ +.....   ....|+++++||.|+.........   ...........+++.+|+.++.++.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999877766654 233322   236789999999998654322221   112233345678999999999999999


Q ss_pred             HHHHHHH
Q 027703          168 FEVVIRE  174 (220)
Q Consensus       168 ~~~l~~~  174 (220)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998864

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.75  E-value=6.9e-20  Score=145.40  Aligned_cols=77  Identities=13%  Similarity=0.164  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  231 (269)
T PRK11831        152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL  231 (269)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence            33477999999999999  9999999999999999988776 78999999999999999999999999999999987765

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.75  E-value=6.7e-17  Score=140.21  Aligned_cols=157  Identities=17%  Similarity=0.157  Sum_probs=112.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC---cCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN---EFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~---~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      +.|+++|..++|||||+++|.+.   .++.+..++.+.+.....+.+++  ..+.+||+||+..+.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            36899999999999999999973   34445555555555555555555  67899999999888777777788999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCc-EEEEEecCCCCCCCCC--CHHHHHHHHHHh----CCeEEEeccCCCCCH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDSIRDV--STEEGKSLAEEE----GLFFMETSALDSTNV  164 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~~~v  164 (220)
                      +|+|+++....+.. +.+..+..   ...| +++++||+|+......  ..++...+....    +++++.+|++++.|+
T Consensus        79 LVVDa~~G~~~qT~-ehl~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI  154 (581)
T TIGR00475        79 LVVDADEGVMTQTG-EHLAVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGI  154 (581)
T ss_pred             EEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCc
Confidence            99999874322221 22222222   2356 8999999998643221  122344555443    578999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027703          165 EAAFEVVIREIYS  177 (220)
Q Consensus       165 ~~l~~~l~~~~~~  177 (220)
                      .++++.+.++...
T Consensus       155 ~eL~~~L~~l~~~  167 (581)
T TIGR00475       155 GELKKELKNLLES  167 (581)
T ss_pred             hhHHHHHHHHHHh
Confidence            9999999877754

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.75  E-value=3.7e-20  Score=141.99  Aligned_cols=71  Identities=13%  Similarity=0.100  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.+... +.+++++||+++.+..+||++++|++|+++..|
T Consensus       139 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         139 VGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            33477999999999999  999999999999999988765 589999999999999999999999999988765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.74  E-value=9.9e-19  Score=134.23  Aligned_cols=74  Identities=14%  Similarity=0.164  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCC
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS  211 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~  211 (220)
                      ....+++++.++++.++|  ++++|..+...+++.|.++..+ +.+++++||+++++..+||++++|++|+++..|+
T Consensus       136 rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            344477999999999999  9999999999999999988876 7899999999999999999999999999988764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.74  E-value=3e-19  Score=130.71  Aligned_cols=175  Identities=18%  Similarity=0.194  Sum_probs=116.0

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeC
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDI   96 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~   96 (220)
                      .+++||||+|||||+..+...           ...+.|.+.+++..+    -.+++..  .......+++.+.+-.-+.+
T Consensus        30 Ts~IGPNGAGKSTLLS~~sRL-----------~~~d~G~i~i~g~~~----~~~~s~~--LAk~lSILkQ~N~i~~rlTV   92 (252)
T COG4604          30 TSIIGPNGAGKSTLLSMMSRL-----------LKKDSGEITIDGLEL----TSTPSKE--LAKKLSILKQENHINSRLTV   92 (252)
T ss_pred             eEEECCCCccHHHHHHHHHHh-----------ccccCceEEEeeeec----ccCChHH--HHHHHHHHHhhchhhheeEH
Confidence            478999999999999999988           555677787777543    2233321  11122233333322211111


Q ss_pred             CC---------------cccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703           97 TR---------------RSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS  157 (220)
Q Consensus        97 ~~---------------~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S  157 (220)
                      .+               .+....+.+.++.+.  ........-++.|.++.--.++        -++++.+..++|  .+
T Consensus        93 ~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAM--------VlaQdTdyvlLDEPLN  164 (252)
T COG4604          93 RDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAM--------VLAQDTDYVLLDEPLN  164 (252)
T ss_pred             HHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhhe--------eeeccCcEEEecCccc
Confidence            11               112222333333321  1111223335556555533333        567777888888  89


Q ss_pred             cCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          158 ALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       158 a~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      .+|-.---++++.+.++..+ +++++++-||+++|..|+|+|+-|+||+++.+|+++++-
T Consensus       165 NLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii  224 (252)
T COG4604         165 NLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII  224 (252)
T ss_pred             ccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhc
Confidence            99988888999999999988 999999999999999999999999999999999999874

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.74  E-value=1.5e-19  Score=142.66  Aligned_cols=77  Identities=18%  Similarity=0.244  Sum_probs=68.6

Q ss_pred             HHHHHHHHH------HhCCeEEE--eccCCCCCHHHHHHHHHHHH-HHHhhhhhcCcchhhhccccceeeeeecCCCCCC
Q 027703          139 TEEGKSLAE------EEGLFFME--TSALDSTNVEAAFEVVIREI-YSNISRKVLNSDAYKAELSVNRVTLVKDGANSSK  209 (220)
Q Consensus       139 ~~~~~~~~~------~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~-~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~  209 (220)
                      ...+++++.      ++++.++|  ++++|..+...+.+.|.++. ..+.+++++||+++.+..+||++++|++|+++..
T Consensus       143 v~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  222 (258)
T PRK13548        143 VQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD  222 (258)
T ss_pred             HHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence            334778884      78999999  99999999999999999887 4588999999999999999999999999999999


Q ss_pred             CCCccc
Q 027703          210 GSMMDF  215 (220)
Q Consensus       210 g~~~~~  215 (220)
                      |+++++
T Consensus       223 ~~~~~~  228 (258)
T PRK13548        223 GTPAEV  228 (258)
T ss_pred             CCHHHH
Confidence            987664

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=4.8e-18  Score=117.53  Aligned_cols=161  Identities=24%  Similarity=0.350  Sum_probs=122.6

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      .++..+++.++|-.|+||||++.++.-.+.. ...||++..+..    +..++..+++||..|+...+..|..|+.+.++
T Consensus        14 g~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~a   88 (182)
T KOG0072|consen   14 GPEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDA   88 (182)
T ss_pred             CCccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccce
Confidence            3447799999999999999999998776543 344565554443    33366899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHH-HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHH-----HHHhCCeEEEeccCCCCC
Q 027703           90 ALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSL-----AEEEGLFFMETSALDSTN  163 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~  163 (220)
                      +|+|+|.+|..........+.. +....-++..+++++||+|.+..  ....|+...     +++..+.++++||.+++|
T Consensus        89 vIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~G  166 (182)
T KOG0072|consen   89 VIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEG  166 (182)
T ss_pred             EEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccC
Confidence            9999999998877766554444 33333455777888999998763  344443322     334456799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027703          164 VEAAFEVVIREIYS  177 (220)
Q Consensus       164 v~~l~~~l~~~~~~  177 (220)
                      .+..++|+.+-+.+
T Consensus       167 ld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  167 LDPAMDWLQRPLKS  180 (182)
T ss_pred             CcHHHHHHHHHHhc
Confidence            99999999987764

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.74  E-value=3.2e-19  Score=136.71  Aligned_cols=72  Identities=19%  Similarity=0.187  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..++.+++++||+++.+..+||++++|++|+++..|
T Consensus       137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence            33477999999999999  9999999999999998887666789999999999999999999999999987654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.74  E-value=8.4e-20  Score=145.48  Aligned_cols=76  Identities=17%  Similarity=0.226  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++++. .||++++|++|++++.|+++++
T Consensus       149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~  227 (277)
T PRK13642        149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSEL  227 (277)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence            44477999999999999  9999999999999999988776 899999999999997 5999999999999999998764

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.74  E-value=1.5e-16  Score=134.62  Aligned_cols=146  Identities=18%  Similarity=0.159  Sum_probs=102.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcch--------hhhhhHHhhc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER--------FRAVTSAYYR   85 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~   85 (220)
                      .+|+++|.+|||||||+++|.+..... ...+..+.+.....+.+.+  ..+.+|||+|...        .......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            589999999999999999999886432 2223444455556666666  6789999999875        2223345678


Q ss_pred             CCcEEEEEEeCCCcccHHH--HHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCC
Q 027703           86 GAVGALVVYDITRRSSFDS--VKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDST  162 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (220)
                      .+|++++|+|..+..+...  +..|+   ..   ...|+++++||+|+.. .   ......+ ...++ .++.+||.++.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l---~~---~~~piilv~NK~D~~~-~---~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKIL---RK---SNKPVILVVNKVDGPD-E---EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHH---HH---cCCcEEEEEECccCcc-c---hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            9999999999987544433  22232   22   2579999999999643 1   1222222 23444 47889999999


Q ss_pred             CHHHHHHHHHH
Q 027703          163 NVEAAFEVVIR  173 (220)
Q Consensus       163 ~v~~l~~~l~~  173 (220)
                      |+.++++.+.+
T Consensus       149 gv~~l~~~I~~  159 (435)
T PRK00093        149 GIGDLLDAILE  159 (435)
T ss_pred             CHHHHHHHHHh
Confidence            99999999987

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.74  E-value=5.9e-19  Score=140.31  Aligned_cols=77  Identities=8%  Similarity=0.066  Sum_probs=68.7

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...-+++++.++++.++|  ++++|..+...+.+.|.++..++.+++++||+++.+..+||+++++ +|+++..|+++++
T Consensus       150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~  228 (272)
T PRK15056        150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT  228 (272)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence            344477999999999999  9999999999999999887666889999999999999999999777 8999999998775

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.74  E-value=5.8e-20  Score=142.66  Aligned_cols=78  Identities=14%  Similarity=0.158  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       134 v~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  213 (230)
T TIGR02770       134 VMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI  213 (230)
T ss_pred             HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            44477999999999999  9999999999999999988775 78999999999999999999999999999999988765


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       214 ~  214 (230)
T TIGR02770       214 F  214 (230)
T ss_pred             H
Confidence            3

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.74  E-value=9.9e-19  Score=138.34  Aligned_cols=77  Identities=14%  Similarity=0.182  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.+|++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  240 (262)
T PRK09984        161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF  240 (262)
T ss_pred             HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence            34477999999999999  9999999999999999988765 78999999999999999999999999999999998765

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.74  E-value=4.7e-19  Score=138.64  Aligned_cols=77  Identities=18%  Similarity=0.244  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++.. +.+++++||+++++..+||++++|++|+++.+|+++++.
T Consensus       152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~  230 (242)
T TIGR03411       152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ  230 (242)
T ss_pred             HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence            34478999999999999  999999999999998888755 689999999999999999999999999999999887753

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.74  E-value=5.9e-19  Score=138.96  Aligned_cols=74  Identities=15%  Similarity=0.205  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeee--cCCCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVK--DGANSSKGSM  212 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~--~G~~~~~g~~  212 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|+  +|+++.+++.
T Consensus       137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence            33477999999999999  9999999999999999887654 7899999999999999999999999  5999887654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.74  E-value=9.4e-17  Score=119.99  Aligned_cols=146  Identities=18%  Similarity=0.198  Sum_probs=91.9

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----------hhhhhH
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----------FRAVTS   81 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----------~~~~~~   81 (220)
                      ...++|+|+|++|+|||||+++|.+..+.....++.+.......+..++   .+.+||+||...          +.....
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            4568999999999999999999999864333333332222222222232   578999999531          222223


Q ss_pred             Hhhc---CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHh--CCeEE
Q 027703           82 AYYR---GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD--VSTEEGKSLAEEE--GLFFM  154 (220)
Q Consensus        82 ~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~--~~~~~~~~~~~~~--~~~~~  154 (220)
                      .+++   .++++++|+|.++..+..... ++..+..   ...|+++++||+|+.....  ...++.+..+...  ...++
T Consensus        93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~  168 (179)
T TIGR03598        93 EYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQ  168 (179)
T ss_pred             HHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceE
Confidence            3444   357899999998766655542 2333322   2578999999999753221  1223344444443  34799


Q ss_pred             EeccCCCCCH
Q 027703          155 ETSALDSTNV  164 (220)
Q Consensus       155 ~~Sa~~~~~v  164 (220)
                      .+||+++.|+
T Consensus       169 ~~Sa~~g~gi  178 (179)
T TIGR03598       169 LFSSLKKTGI  178 (179)
T ss_pred             EEECCCCCCC
Confidence            9999999986

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.74  E-value=1.7e-16  Score=139.44  Aligned_cols=156  Identities=17%  Similarity=0.173  Sum_probs=111.2

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCccccee--eeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGV--EFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~--~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      ....|+|+|..++|||||+++|.+..+.....++++.  ......+..++....+.||||||+..|...+...+..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            4568999999999999999999988776544433332  22222333334457899999999999988888889999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-------Hh--CCeEEEeccCCC
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-------EE--GLFFMETSALDS  161 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~  161 (220)
                      ++|+|+++....+.... +..+.   ....|+++++||+|+....   .++....+.       ..  .++++.+||+++
T Consensus       323 ILVVDA~dGv~~QT~E~-I~~~k---~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG  395 (742)
T CHL00189        323 ILIIAADDGVKPQTIEA-INYIQ---AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQG  395 (742)
T ss_pred             EEEEECcCCCChhhHHH-HHHHH---hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence            99999987544333222 22222   2357999999999986422   232222221       12  368999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIREI  175 (220)
Q Consensus       162 ~~v~~l~~~l~~~~  175 (220)
                      .|+.++++++..+.
T Consensus       396 ~GIdeLle~I~~l~  409 (742)
T CHL00189        396 TNIDKLLETILLLA  409 (742)
T ss_pred             CCHHHHHHhhhhhh
Confidence            99999999998764

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.74  E-value=8.1e-19  Score=140.99  Aligned_cols=178  Identities=20%  Similarity=0.220  Sum_probs=122.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe---------------EEEEEEEecCCcchhhhhh
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK---------------EVKAQIWDTAGQERFRAVT   80 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~---------------~~~~~~~d~~g~~~~~~~~   80 (220)
                      .++++|++|||||||=.+|+....+.            +.+.|.|.               .+++.|-|--|....+...
T Consensus       315 TlGlVGESGSGKsTlG~allrL~~s~------------G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV  382 (534)
T COG4172         315 TLGLVGESGSGKSTLGLALLRLIPSQ------------GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTV  382 (534)
T ss_pred             eEEEEecCCCCcchHHHHHHhhcCcC------------ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCH
Confidence            58999999999999999999984332            44555443               2455666666544333222


Q ss_pred             HHhhcCCcEEEEEEe--CCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE
Q 027703           81 SAYYRGAVGALVVYD--ITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME  155 (220)
Q Consensus        81 ~~~~~~~~~~i~v~d--~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (220)
                      .+...  .+ +.|-.  .+..+..+.+.+.+.++....   ...+.-++.|.++.++        .|++++.+|.+.++|
T Consensus       383 ~qII~--EG-L~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIA--------IARAliLkP~~i~LD  451 (534)
T COG4172         383 GQIIE--EG-LRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIA--------IARALILKPELILLD  451 (534)
T ss_pred             HHHhh--hh-hhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHH--------HHHHHhcCCcEEEec
Confidence            22211  11 22222  222333444444444432111   1223335666655544        466999999999999


Q ss_pred             --eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          156 --TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       156 --~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                        |||+|-.-..++++.+..+..+ +.+-+|+|||+..+..+|++++||++|+|+++|+.+++.
T Consensus       452 EPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if  515 (534)
T COG4172         452 EPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVF  515 (534)
T ss_pred             CCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence              9999999999999999888877 889999999999999999999999999999999988763

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.74  E-value=9.2e-19  Score=150.59  Aligned_cols=77  Identities=14%  Similarity=0.295  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|+.+...+.+.|.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       149 v~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (510)
T PRK15439        149 VEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL  227 (510)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence            34477999999999999  999999999999999998876689999999999999999999999999999999988765

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.73  E-value=4.7e-19  Score=135.54  Aligned_cols=71  Identities=14%  Similarity=0.230  Sum_probs=64.5

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      .-+++++.++++.++|  ++++|..+...+++.+.++..++.+++++||+++++..+||++++|++|+++..|
T Consensus       136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            3477999999999999  9999999999999998887766789999999999999999999999999988765

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.73  E-value=2e-19  Score=142.56  Aligned_cols=77  Identities=13%  Similarity=0.145  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       158 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  237 (267)
T PRK15112        158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADV  237 (267)
T ss_pred             HHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence            33477999999999999  9999999999999999998776 78999999999999999999999999999999987664

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.73  E-value=6.9e-20  Score=134.30  Aligned_cols=179  Identities=15%  Similarity=0.183  Sum_probs=121.8

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE---------EEEecCCcc-hhhhhhHHhhcC
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA---------QIWDTAGQE-RFRAVTSAYYRG   86 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~---------~~~d~~g~~-~~~~~~~~~~~~   86 (220)
                      |+++||||+||||.++++.|.           +.++.+.+.+++.++.-         -+--.|+.. -|+.  .....+
T Consensus        33 VGLLGPNGAGKTT~Fymi~Gl-----------v~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~--LtV~dN   99 (243)
T COG1137          33 VGLLGPNGAGKTTTFYMIVGL-----------VRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK--LTVEDN   99 (243)
T ss_pred             EEEECCCCCCceeEEEEEEEE-----------EecCCceEEECCcccccCChHHHhhcCcccccccchHhhc--CcHHHH
Confidence            789999999999999999999           56667777777755421         111111111 0000  001111


Q ss_pred             CcEEEEEEeCCC--cccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCC
Q 027703           87 AVGALVVYDITR--RSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALD  160 (220)
Q Consensus        87 ~~~~i~v~d~~~--~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~  160 (220)
                      ..+++-+..-+.  .+....+..++.++.  .........++.|.+..        .|.|++++.+|++.++|  .++.|
T Consensus       100 i~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR--------~EIARaLa~~P~fiLLDEPFAGVD  171 (243)
T COG1137         100 IMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRR--------VEIARALAANPKFILLDEPFAGVD  171 (243)
T ss_pred             HHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHH--------HHHHHHHhcCCCEEEecCCccCCC
Confidence            111111111111  122233445555532  33333344445555444        56677999999999999  99999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          161 STNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      |..+.++-..+..+...+..+++.-|+.-+...+|||.|++.+|+++.+|+|+++.
T Consensus       172 PiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~  227 (243)
T COG1137         172 PIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV  227 (243)
T ss_pred             chhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHh
Confidence            99999999988888888999999999999999999999999999999999999875

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.73  E-value=6.5e-19  Score=151.65  Aligned_cols=77  Identities=21%  Similarity=0.276  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.|.++..++.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus       154 v~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  232 (510)
T PRK09700        154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV  232 (510)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence            34477999999999999  999999999999999998876689999999999999999999999999999999998775

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.73  E-value=4.6e-19  Score=139.91  Aligned_cols=76  Identities=18%  Similarity=0.282  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      .-+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++.+..+||++++|++|++++.|+++++
T Consensus       161 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  239 (258)
T PRK11701        161 QIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQV  239 (258)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            3377999999999999  9999999999999999988776 78999999999999999999999999999999988764

>PRK10908 cell division protein FtsE; Provisional

Probab=99.73  E-value=2.2e-19  Score=138.72  Aligned_cols=70  Identities=11%  Similarity=0.117  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSS  208 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~  208 (220)
                      ..-+++++.++++.++|  ++++|..+...+++.+.++..++.+++++||+++++..+||++++|++|+++.
T Consensus       146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        146 VGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            34477999999999999  99999999999999888876667899999999999999999999999998753

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.73  E-value=1.9e-19  Score=142.92  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.+.++..+ +.+++++||+++++.. ||++++|++|++++.|+++++
T Consensus       151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~  229 (269)
T PRK13648        151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI  229 (269)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHH
Confidence            33488999999999999  9999999999999999887765 7899999999999985 999999999999999988764

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.73  E-value=6.5e-19  Score=139.59  Aligned_cols=77  Identities=14%  Similarity=0.182  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  238 (265)
T TIGR02769       159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL  238 (265)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHH
Confidence            34478999999999999  9999999999999999998876 89999999999999999999999999999999998765

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.73  E-value=2.6e-18  Score=124.56  Aligned_cols=180  Identities=14%  Similarity=0.114  Sum_probs=125.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe------------EEEEEEEecCCcchhhhhhHHh
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK------------EVKAQIWDTAGQERFRAVTSAY   83 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~------------~~~~~~~d~~g~~~~~~~~~~~   83 (220)
                      .++++|.||||||||.++|.|...|           ..+.+.+++.            .+++.|-|.......+....+.
T Consensus        41 TlaiIG~NGSGKSTLakMlaGmi~P-----------TsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqi  109 (267)
T COG4167          41 TLAIIGENGSGKSTLAKMLAGMIEP-----------TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQI  109 (267)
T ss_pred             EEEEEccCCCcHhHHHHHHhcccCC-----------CCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhH
Confidence            5899999999999999999999544           4455555542            3455555555433333333333


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD---TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA  158 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa  158 (220)
                      +...-  -+.-+.+.++.-+.+.+-+..+..+.+   -.+..+..+.|+.        +.-|++++.+|.+.+.|  ..+
T Consensus       110 Ld~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQR--------VaLARALIL~P~iIIaDeAl~~  179 (267)
T COG4167         110 LDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQR--------VALARALILRPKIIIADEALAS  179 (267)
T ss_pred             hcchh--hhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHH--------HHHHHHHhcCCcEEEehhhhhh
Confidence            22221  123344444455555554444433322   1122233455544        44566999999999999  889


Q ss_pred             CCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          159 LDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      +|-.-..++.+..+++.++ +.+-+++++++-.++.++|.|+||++|++++.|++.++.
T Consensus       180 LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~  238 (267)
T COG4167         180 LDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL  238 (267)
T ss_pred             ccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence            9999999999999998877 899999999999999999999999999999999988764

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.73  E-value=1.6e-16  Score=121.02  Aligned_cols=116  Identities=20%  Similarity=0.340  Sum_probs=87.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC--CeEEEEEEEecCCcchhhhhhHHhhcCC-cEEEE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID--GKEVKAQIWDTAGQERFRAVTSAYYRGA-VGALV   92 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~-~~~i~   92 (220)
                      +|+++|++|||||||+++|....+......+ .  .....+...  +....+.+||+||+.++...+..+++.+ +++++
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~--~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~   78 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-E--PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVF   78 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-e--ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEE
Confidence            6899999999999999999998876665433 1  122222221  3456789999999998888888888888 99999


Q ss_pred             EEeCCCc-ccHHHHHHHHHHHHh---hCCCCCcEEEEEecCCCCCC
Q 027703           93 VYDITRR-SSFDSVKRWLEELTT---HCDTAVGRMLVGNKCDLDSI  134 (220)
Q Consensus        93 v~d~~~~-~~~~~~~~~~~~l~~---~~~~~~~~~~v~~k~Dl~~~  134 (220)
                      |+|+.+. .++.....++..+..   ......|+++++||+|+..+
T Consensus        79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9999987 567777666655422   12246899999999998653

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.73  E-value=7e-19  Score=151.12  Aligned_cols=77  Identities=22%  Similarity=0.232  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+..++.+.+.++..++.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus       150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (501)
T PRK10762        150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL  228 (501)
T ss_pred             HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence            44477999999999999  999999999999999988866688999999999999999999999999999999988765

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.73  E-value=1.3e-18  Score=133.66  Aligned_cols=68  Identities=10%  Similarity=0.140  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGAN  206 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~  206 (220)
                      ..-+++++.++++.++|  ++++|+.+...+.+.+.++..++.+++++||+++.+..+||++++|++|++
T Consensus       145 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         145 VAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            33477999999999999  999999999999999998766688999999999999999999999999975

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.73  E-value=8.4e-19  Score=147.79  Aligned_cols=77  Identities=8%  Similarity=0.031  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.+|++.++|  ++++|+.....+++.|.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       152 VaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el  230 (549)
T PRK13545        152 LGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEV  230 (549)
T ss_pred             HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            34477999999999999  999999999999999988766688999999999999999999999999999999987664

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.73  E-value=1.3e-18  Score=130.14  Aligned_cols=149  Identities=23%  Similarity=0.293  Sum_probs=100.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .++++|+||+|||||++.|.+...+           ..+.+.+++..+.    +.. ...... ...+..+         
T Consensus        27 ~~~l~G~nGsGKStLl~~i~G~~~~-----------~~G~v~~~g~~~~----~~~-~~~~~~-~i~~~~q---------   80 (180)
T cd03214          27 IVGILGPNGAGKSTLLKTLAGLLKP-----------SSGEILLDGKDLA----SLS-PKELAR-KIAYVPQ---------   80 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECC----cCC-HHHHHH-HHhHHHH---------
Confidence            5899999999999999999998432           4566666664321    000 000000 0011111         


Q ss_pred             CCCcccHHHHHHHHHHH--HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVV  171 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l  171 (220)
                                  ++..+  ..........++.|.|+.        ..-+++++.++++.++|  ++++|..+...+.+.+
T Consensus        81 ------------~l~~~gl~~~~~~~~~~LS~G~~qr--------l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l  140 (180)
T cd03214          81 ------------ALELLGLAHLADRPFNELSGGERQR--------VLLARALAQEPPILLLDEPTSHLDIAHQIELLELL  140 (180)
T ss_pred             ------------HHHHcCCHhHhcCCcccCCHHHHHH--------HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence                        22221  111111122233333333        34477999999999999  9999999999999999


Q ss_pred             HHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          172 IREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       172 ~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      .++..+ +.+++++||+++++..+||++++|++|+++..|
T Consensus       141 ~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~  180 (180)
T cd03214         141 RRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG  180 (180)
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            887766 789999999999999999999999999987654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.73  E-value=1.2e-18  Score=136.72  Aligned_cols=77  Identities=16%  Similarity=0.163  Sum_probs=68.0

Q ss_pred             HHHHHHHHH-------HhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCC
Q 027703          139 TEEGKSLAE-------EEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSK  209 (220)
Q Consensus       139 ~~~~~~~~~-------~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~  209 (220)
                      ...+++++.       ++++.++|  ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+++.+
T Consensus       135 v~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~  214 (248)
T PRK03695        135 VRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS  214 (248)
T ss_pred             HHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            344778886       56899999  999999999999999988876689999999999999999999999999999999


Q ss_pred             CCCccc
Q 027703          210 GSMMDF  215 (220)
Q Consensus       210 g~~~~~  215 (220)
                      |+++++
T Consensus       215 g~~~~~  220 (248)
T PRK03695        215 GRRDEV  220 (248)
T ss_pred             CCHHHH
Confidence            987654

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.73  E-value=2.4e-19  Score=139.75  Aligned_cols=72  Identities=18%  Similarity=0.177  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|
T Consensus       162 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         162 AEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence            34477999999999999  9999999999999999988765 789999999999999999999999999987664

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.73  E-value=6.8e-19  Score=136.09  Aligned_cols=72  Identities=11%  Similarity=0.096  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ..-+++++.++++.++|  ++++|..+...+++++.++..++.+++++||+++++..+||++++|++|+++..|
T Consensus       151 v~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         151 LAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            44478999999999999  9999999999999999988766789999999999999999999999999988765

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.73  E-value=1.2e-18  Score=149.81  Aligned_cols=78  Identities=17%  Similarity=0.213  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.|.++..++.+++++|||++++..+||++++|++|+++..|+++++.
T Consensus       412 l~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~  491 (510)
T PRK15439        412 VLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN  491 (510)
T ss_pred             HHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence            33466999999999999  9999999999999999888777889999999999999999999999999999999987764

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.73  E-value=1.5e-16  Score=116.95  Aligned_cols=150  Identities=19%  Similarity=0.240  Sum_probs=93.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----------hhhhhHHhhc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----------FRAVTSAYYR   85 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----------~~~~~~~~~~   85 (220)
                      .|+++|++|||||||++.|.+..+.....++.+.......+..++   .+.+||++|...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996554444444433333332333333   788999998532          2222333333


Q ss_pred             ---CCcEEEEEEeCCCcccHH--HHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHH--HhCCeEEEe
Q 027703           86 ---GAVGALVVYDITRRSSFD--SVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--STEEGKSLAE--EEGLFFMET  156 (220)
Q Consensus        86 ---~~~~~i~v~d~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~  156 (220)
                         ..+.+++++|.....+..  .+..|+..   .   ..|+++++||.|+......  ........+.  ....+++.+
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE---L---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---c---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               346778888887653322  22233322   1   4788999999997432211  1112222222  345678899


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 027703          157 SALDSTNVEAAFEVVIRE  174 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~  174 (220)
                      |++++.++.+++++|.++
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.73  E-value=8.3e-19  Score=138.54  Aligned_cols=77  Identities=9%  Similarity=0.105  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|+.....+++.+.++...+.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~  230 (264)
T PRK13546        152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV  230 (264)
T ss_pred             HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHH
Confidence            33477999999999999  999999999999999988866688999999999999999999999999999999987654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.73  E-value=5.5e-19  Score=148.39  Aligned_cols=75  Identities=17%  Similarity=0.197  Sum_probs=70.9

Q ss_pred             HHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          142 GKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       142 ~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      |.+++.+|++.++|  |+++|.....++++.|.++..+ +.+++++|||+..+.++||||+||++|++++.|+++++.
T Consensus       166 AmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~  243 (539)
T COG1123         166 AMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL  243 (539)
T ss_pred             HHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHH
Confidence            55999999999999  9999999999999999999976 899999999999999999999999999999999998864

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.73  E-value=2.4e-19  Score=138.10  Aligned_cols=67  Identities=21%  Similarity=0.277  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGAN  206 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~  206 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++++. +||++++|++|++
T Consensus       149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence            33477999999999999  9999999999999999988774 789999999999987 9999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.72  E-value=1.3e-18  Score=149.67  Aligned_cols=78  Identities=12%  Similarity=0.158  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ...+++++.++++.++|  ++++|..+..++++.+.++..++.+++++||+++++..+||++++|++|+++.+|+++++.
T Consensus       414 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  493 (506)
T PRK13549        414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT  493 (506)
T ss_pred             HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence            44477999999999999  9999999999999999988777899999999999999999999999999999999988763

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.72  E-value=2.7e-18  Score=136.25  Aligned_cols=77  Identities=22%  Similarity=0.319  Sum_probs=69.3

Q ss_pred             HHHHHHHHH---------HhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCC
Q 027703          139 TEEGKSLAE---------EEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGAN  206 (220)
Q Consensus       139 ~~~~~~~~~---------~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~  206 (220)
                      ...+++++.         ++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++.+..+||++++|++|++
T Consensus       154 v~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i  233 (272)
T PRK13547        154 VQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI  233 (272)
T ss_pred             HHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence            344778884         89999999  9999999999999999988776 78999999999999999999999999999


Q ss_pred             CCCCCCccc
Q 027703          207 SSKGSMMDF  215 (220)
Q Consensus       207 ~~~g~~~~~  215 (220)
                      +..|+++++
T Consensus       234 ~~~g~~~~~  242 (272)
T PRK13547        234 VAHGAPADV  242 (272)
T ss_pred             EEecCHHHH
Confidence            999987664

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.72  E-value=4.4e-19  Score=136.22  Aligned_cols=68  Identities=22%  Similarity=0.266  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGAN  206 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~  206 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++...+.+++++||+++.+..+||++++|++|++
T Consensus       144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            34477999999999999  999999999999999998876688999999999999999999999999975

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.72  E-value=6.9e-19  Score=154.44  Aligned_cols=76  Identities=17%  Similarity=0.142  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..+++++.++++.++|  +|++|..+..++++.|.++..+ +.+++++|||++.+..+||++++|++|++++.|+++++
T Consensus       473 ~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i  551 (623)
T PRK10261        473 CIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAV  551 (623)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            3377999999999999  9999999999999999998776 89999999999999999999999999999999998775

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.72  E-value=8.1e-19  Score=150.72  Aligned_cols=77  Identities=13%  Similarity=0.211  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      .-+++++.++++.++|  |+++|..+..++++.|.++...+.+++++|||++++..+||++++|++|+++..|+.+++.
T Consensus       406 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  484 (501)
T PRK11288        406 ILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT  484 (501)
T ss_pred             HHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence            3366999999999999  9999999999999999988777899999999999999999999999999999999887653

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.72  E-value=3e-19  Score=141.89  Aligned_cols=76  Identities=14%  Similarity=0.184  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.+.++..+ +.+++++||+++.+. .||++++|++|+++..|+++++
T Consensus       151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~  229 (271)
T PRK13632        151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEI  229 (271)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHH
Confidence            33477999999999999  9999999999999999988776 489999999999986 7999999999999999887654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.72  E-value=4.9e-16  Score=131.28  Aligned_cols=150  Identities=17%  Similarity=0.153  Sum_probs=104.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcc--------hhhhhhHHhhcC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE--------RFRAVTSAYYRG   86 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~   86 (220)
                      +|+++|.+|||||||+|+|.+..... ...+..+.+.....+...+  ..+.+|||||..        .+......++..
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            58999999999999999999876432 2223444445555666665  368899999963        223334456788


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVE  165 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  165 (220)
                      +|++++|+|..+....... .+...+..   ...|+++++||+|+..... .   ... ....++ .++.+||..+.|+.
T Consensus        79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~-~---~~~-~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDA-V---AAE-FYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCcccc-c---HHH-HHhcCCCCeEEEeCCcCCChH
Confidence            9999999999875544432 22222332   2578999999999764332 1   112 334555 78999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          166 AAFEVVIREIY  176 (220)
Q Consensus       166 ~l~~~l~~~~~  176 (220)
                      ++++++.+.+.
T Consensus       150 ~ll~~i~~~l~  160 (429)
T TIGR03594       150 DLLDAILELLP  160 (429)
T ss_pred             HHHHHHHHhcC
Confidence            99999987763

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.72  E-value=1.9e-19  Score=141.32  Aligned_cols=76  Identities=18%  Similarity=0.201  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+++.+.++.. +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  230 (247)
T TIGR00972       153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI  230 (247)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            33488999999999999  999999999999998888765 48999999999999999999999999999999988765

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.72  E-value=1.4e-18  Score=135.49  Aligned_cols=77  Identities=16%  Similarity=0.192  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.+...+ +.+++++||+++++..+||++++|++|++++.|+++++
T Consensus       139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  218 (237)
T TIGR00968       139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV  218 (237)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence            44477999999999999  9999999999999999987776 78999999999999999999999999999999987764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.72  E-value=1.8e-18  Score=148.75  Aligned_cols=78  Identities=12%  Similarity=0.253  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..-+++++.++++.++|  ++++|+.+..++++.|.++..++.+++++||+++++..+||++++|++|+++..|+++++.
T Consensus       152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  231 (506)
T PRK13549        152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT  231 (506)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence            44477999999999999  9999999999999999988666889999999999999999999999999999999988764

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.72  E-value=2.7e-19  Score=142.91  Aligned_cols=76  Identities=21%  Similarity=0.302  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++.+. .||++++|++|++++.|+++++
T Consensus       152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~  230 (282)
T PRK13640        152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEI  230 (282)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence            44488999999999999  9999999999999999988766 889999999999985 7999999999999999988764

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.72  E-value=1.6e-18  Score=133.13  Aligned_cols=67  Identities=18%  Similarity=0.249  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGA  205 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~  205 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+
T Consensus       146 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            44477999999999999  99999999999999999876668999999999999999999999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.72  E-value=1.2e-18  Score=134.62  Aligned_cols=76  Identities=12%  Similarity=0.174  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+++..|++.+
T Consensus       133 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             HHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence            34477999999999999  99999999999999999886667899999999999999999999999999999998764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.72  E-value=6.6e-16  Score=137.30  Aligned_cols=154  Identities=16%  Similarity=0.145  Sum_probs=112.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh----------hHHh
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV----------TSAY   83 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~----------~~~~   83 (220)
                      .++|+++|.+|||||||+|+|++........+..+++...+.+..+  ...+.++|+||...+...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            3689999999999999999999986655445665666666665544  457789999997654321          1223


Q ss_pred             --hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCC
Q 027703           84 --YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDS  161 (220)
Q Consensus        84 --~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (220)
                        ...+|.+++|+|.++.+.-   ..+..++..   ...|++++.||.|+...+.. ..+..++.+..+++++.+|+.++
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence              2478999999999875432   223334333   25899999999998654443 34566777888999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIREIY  176 (220)
Q Consensus       162 ~~v~~l~~~l~~~~~  176 (220)
                      .|++++.+.+.+...
T Consensus       154 ~GIdeL~~~I~~~~~  168 (772)
T PRK09554        154 RGIEALKLAIDRHQA  168 (772)
T ss_pred             CCHHHHHHHHHHhhh
Confidence            999999999887653

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.72  E-value=1e-17  Score=124.24  Aligned_cols=129  Identities=12%  Similarity=0.093  Sum_probs=97.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      =.++++|+||+|||||++.|.+...+           ..+.+.+++..+.+.    +..                     
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~----~q~---------------------   69 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIP-----------NGDNDEWDGITPVYK----PQY---------------------   69 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCC-----------CCcEEEECCEEEEEE----ccc---------------------
Confidence            36899999999999999999998433           456666665322110    000                     


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVI  172 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~  172 (220)
                          ..                              ++.........+++++.++++.++|  ++++|..+...+.+++.
T Consensus        70 ----~~------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~  115 (177)
T cd03222          70 ----ID------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIR  115 (177)
T ss_pred             ----CC------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence                00                              3322233344577999999999999  99999999999999999


Q ss_pred             HHHHHH-hhhhhcCcchhhhccccceeeeeecCCCCCC--CCCc
Q 027703          173 REIYSN-ISRKVLNSDAYKAELSVNRVTLVKDGANSSK--GSMM  213 (220)
Q Consensus       173 ~~~~~~-~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~--g~~~  213 (220)
                      +...++ .+++++||+++.+..+||++++|+++-.+..  |.|.
T Consensus       116 ~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~  159 (177)
T cd03222         116 RLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK  159 (177)
T ss_pred             HHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence            887764 8999999999999999999999999876655  5543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.72  E-value=3.6e-19  Score=140.25  Aligned_cols=77  Identities=12%  Similarity=0.149  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.|.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  228 (254)
T PRK10418        149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL  228 (254)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            33477999999999999  9999999999999999988765 78999999999999999999999999999999987664

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=2.5e-19  Score=141.40  Aligned_cols=76  Identities=13%  Similarity=0.146  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++. ++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  240 (258)
T PRK14268        163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI  240 (258)
T ss_pred             HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            33488999999999999  99999999999999988874 478999999999999999999999999999999988765

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.72  E-value=6.4e-18  Score=148.32  Aligned_cols=76  Identities=14%  Similarity=0.266  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..-||++.++|++.++|  ||++|.++-..+.+.+.+... +.|.++++|+++.+. .||+|+||++|+++++|+.+++.
T Consensus       618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~ell  695 (709)
T COG2274         618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEELL  695 (709)
T ss_pred             HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHHH
Confidence            44477999999999999  999999999999998776554 499999999999977 69999999999999999998764

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.72  E-value=1e-17  Score=123.26  Aligned_cols=133  Identities=24%  Similarity=0.304  Sum_probs=97.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .++++|+||+|||||++.|.+...+           ..+.+.+++..+.       ....     ....+..  +-+++.
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~v~~~g~~~~-------~~~~-----~~~~~~~--i~~~~q   82 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLYKP-----------DSGEILVDGKEVS-------FASP-----RDARRAG--IAMVYQ   82 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEECC-------cCCH-----HHHHhcC--eEEEEe
Confidence            5899999999999999999998433           4566666664321       1000     0111111  223333


Q ss_pred             CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~  173 (220)
                                                         +.........-+++++.++++.++|  ++++|..+...+.+.+.+
T Consensus        83 -----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~  127 (163)
T cd03216          83 -----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRR  127 (163)
T ss_pred             -----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence                                               2222233344466999999999999  999999999999999998


Q ss_pred             HHHHHhhhhhcCcchhhhccccceeeeeecCCCCC
Q 027703          174 EIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSS  208 (220)
Q Consensus       174 ~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~  208 (220)
                      +..++.+++++||+++.+..+||++++|++|++++
T Consensus       128 ~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         128 LRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             HHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            87668899999999999999999999999998764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.72  E-value=8.6e-19  Score=150.24  Aligned_cols=77  Identities=14%  Similarity=0.214  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.+.++...+.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       143 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  221 (491)
T PRK10982        143 IEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL  221 (491)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence            34477999999999999  999999999999999988766688999999999999999999999999999999987765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.72  E-value=6.8e-16  Score=137.29  Aligned_cols=171  Identities=22%  Similarity=0.205  Sum_probs=113.8

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----------hhhh-h
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----------FRAV-T   80 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----------~~~~-~   80 (220)
                      ..+||+++|.+|||||||+++|++..... ...++.+.+.....+.+++..  +.+|||+|..+          +... .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            45899999999999999999999987432 223334445555556666654  56899999532          1111 1


Q ss_pred             HHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEE
Q 027703           81 SAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFME  155 (220)
Q Consensus        81 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~  155 (220)
                      ...++.+|++++|+|+++..+++... ++..+..   ...|+++++||+|+.....  .+.....+..     ...+++.
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            23468899999999999988888764 3333322   3579999999999854221  1122122221     1235688


Q ss_pred             eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhc
Q 027703          156 TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE  192 (220)
Q Consensus       156 ~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~  192 (220)
                      +||+++.|+.++++.+.+...+ ....+.|+.++...
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~-~~~~i~T~~Ln~~l  636 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALES-WDQRIPTGKLNAFL  636 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHH-hcccCChHHHHHHH
Confidence            9999999999999999987764 23334555555443

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.72  E-value=7.8e-16  Score=136.92  Aligned_cols=156  Identities=17%  Similarity=0.142  Sum_probs=104.6

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcch--------hhhhhH
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER--------FRAVTS   81 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~--------~~~~~~   81 (220)
                      +....+|+|+|.+|||||||+|+|++..... ...++.+.+.......+++  ..+.+|||+|...        +.....
T Consensus       272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~  349 (712)
T PRK09518        272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQ  349 (712)
T ss_pred             cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence            3445789999999999999999999876432 2234444444444444544  4678899999653        223334


Q ss_pred             HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCC
Q 027703           82 AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALD  160 (220)
Q Consensus        82 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (220)
                      .++..+|++++|+|.++.....+ ..|...+..   ...|+++++||.|+....    .....+.. .+. ..+.+||++
T Consensus       350 ~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~-lg~~~~~~iSA~~  420 (712)
T PRK09518        350 IAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWK-LGLGEPYPISAMH  420 (712)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHH-cCCCCeEEEECCC
Confidence            56789999999999976433222 133333432   368999999999975321    11112211 222 356899999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREIYS  177 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~  177 (220)
                      +.|+.++++++.+.+.+
T Consensus       421 g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        421 GRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCchHHHHHHHHhccc
Confidence            99999999999987744

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.71  E-value=6.4e-19  Score=136.64  Aligned_cols=72  Identities=18%  Similarity=0.219  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|++|+++..|
T Consensus       154 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            33477999999999999  9999999999999999988876 789999999999999999999999999987654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.71  E-value=4.6e-19  Score=140.08  Aligned_cols=76  Identities=12%  Similarity=0.124  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.|.++. ++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       165 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  242 (260)
T PRK10744        165 LCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI  242 (260)
T ss_pred             HHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            33478999999999999  99999999999999888874 468999999999999999999999999999999987765

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.71  E-value=5.2e-18  Score=133.22  Aligned_cols=76  Identities=11%  Similarity=0.117  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+++.|.++..+ +.+++++||+++++..+||++++|++ +++..|+++++
T Consensus       129 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~  207 (251)
T PRK09544        129 VLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVV  207 (251)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence            33477999999999999  9999999999999999988776 78999999999999999999999965 79999988765

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.71  E-value=7e-16  Score=136.64  Aligned_cols=154  Identities=18%  Similarity=0.208  Sum_probs=108.7

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      .....|+|+|..++|||||+++|.+..+.....+.++.......+.+++  ..+.||||||+..|...+...+..+|+++
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            3457799999999999999999988777655444433333333444444  56889999999999888888889999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-------HHh--CCeEEEeccCCCC
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-------EEE--GLFFMETSALDST  162 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-------~~~--~~~~~~~Sa~~~~  162 (220)
                      +|+|+++...-+.... +...   .....|+++++||+|+....   .+.....+       ...  .++++.+||+++.
T Consensus       366 LVVdAddGv~~qT~e~-i~~a---~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~  438 (787)
T PRK05306        366 LVVAADDGVMPQTIEA-INHA---KAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE  438 (787)
T ss_pred             EEEECCCCCCHhHHHH-HHHH---HhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence            9999987543333222 2222   22358899999999986432   22221111       112  3689999999999


Q ss_pred             CHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIRE  174 (220)
Q Consensus       163 ~v~~l~~~l~~~  174 (220)
                      |+.+++++|...
T Consensus       439 GI~eLle~I~~~  450 (787)
T PRK05306        439 GIDELLEAILLQ  450 (787)
T ss_pred             CchHHHHhhhhh
Confidence            999999998754

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.71  E-value=1.1e-18  Score=137.42  Aligned_cols=77  Identities=17%  Similarity=0.255  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|+.+...+.+.+.+...+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       157 v~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~  236 (253)
T TIGR02323       157 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQV  236 (253)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHH
Confidence            34488999999999999  9999999999999999988765 89999999999999999999999999999999887654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.71  E-value=1.4e-18  Score=148.92  Aligned_cols=77  Identities=16%  Similarity=0.111  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|+.+...+.+.+.++..++.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus       144 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  222 (490)
T PRK10938        144 TLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI  222 (490)
T ss_pred             HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            34477999999999999  999999999999999998876688999999999999999999999999999999887654

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.71  E-value=8.7e-19  Score=139.01  Aligned_cols=77  Identities=17%  Similarity=0.157  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.|.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~  239 (268)
T PRK10419        160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK  239 (268)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhc
Confidence            34478999999999999  9999999999999999988776 78999999999999999999999999999999998775

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=7.4e-19  Score=138.24  Aligned_cols=76  Identities=12%  Similarity=0.103  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  +|++|..+...+.+.|.++.. +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (251)
T PRK14270        156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI  233 (251)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence            33477999999999999  999999999999998888765 58999999999999999999999999999999998765

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.71  E-value=6.9e-19  Score=135.88  Aligned_cols=68  Identities=25%  Similarity=0.323  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANS  207 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~  207 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++.+.. +|++++|++|+++
T Consensus       150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~  220 (221)
T TIGR02211       150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence            33477999999999999  9999999999999999988765 7899999999999865 7999999999875

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.71  E-value=1.6e-17  Score=130.12  Aligned_cols=78  Identities=17%  Similarity=0.062  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccc-cceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS-VNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~-a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++..++.+++++||+++.+..+ ||++++|++|+++..|+++++
T Consensus       153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (243)
T TIGR01978       153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELA  232 (243)
T ss_pred             HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence            44477999999999999  999999999999999988866678999999999999998 899999999999999998755


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       233 ~  233 (243)
T TIGR01978       233 K  233 (243)
T ss_pred             c
Confidence            4

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.71  E-value=3.7e-18  Score=132.42  Aligned_cols=69  Identities=12%  Similarity=0.161  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSS  208 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~  208 (220)
                      ...+++++.++++.++|  ++++|..+...+++.+.++..+ +.+++++||+++.+. .||++++|++|++++
T Consensus       155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~  226 (228)
T PRK10584        155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQE  226 (228)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence            34477999999999999  9999999999999999988776 789999999999985 599999999999864

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.71  E-value=2e-18  Score=151.59  Aligned_cols=77  Identities=16%  Similarity=0.166  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.++++.++|  |+++|..+..++++.+.++..+ +.+++++||+++.+..+|||+++|++|+++..|+++++
T Consensus       177 v~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~  256 (623)
T PRK10261        177 VMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI  256 (623)
T ss_pred             HHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHh
Confidence            33488999999999999  9999999999999999988766 89999999999999999999999999999999987665

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.70  E-value=9.4e-19  Score=137.87  Aligned_cols=77  Identities=19%  Similarity=0.228  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ...+++++.++++.++|  ++++|..+...+++.|.++. ++.+++++||+++++..+||++++|++|+++.+|+++++.
T Consensus       159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  237 (254)
T PRK14273        159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF  237 (254)
T ss_pred             HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            33488999999999999  99999999999999998874 4689999999999999999999999999999999987653

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.70  E-value=2.5e-17  Score=144.06  Aligned_cols=178  Identities=17%  Similarity=0.249  Sum_probs=109.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcc-hhhh-hhHHhhc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQE-RFRA-VTSAYYR   85 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~-~~~~-~~~~~~~   85 (220)
                      +++|+|++|+|||||++.|++..           ++..|.+.++|.++.-        .+--+++.. -+.. ...+.  
T Consensus       371 ~~aIvG~sGsGKSTLl~ll~gl~-----------~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni--  437 (582)
T PRK11176        371 TVALVGRSGSGKSTIANLLTRFY-----------DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNI--  437 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc-----------CCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHH--
Confidence            58999999999999999999994           4456777777754310        000011100 0000 01110  


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHH-----HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEE-----LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA  158 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa  158 (220)
                            .+.. .+..+-+++.+....     .....+......+..+...++....+...-||++.+++++.++|  ||+
T Consensus       438 ------~~~~-~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsa  510 (582)
T PRK11176        438 ------AYAR-TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA  510 (582)
T ss_pred             ------hcCC-CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence                  0000 011122333222222     11111111222222222223333333344488999999999999  999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          159 LDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      +|+.+...+++.+.+. .++.|++++||+++.+. .||+|++|++|++++.|+++++
T Consensus       511 LD~~t~~~i~~~l~~~-~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l  565 (582)
T PRK11176        511 LDTESERAIQAALDEL-QKNRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAEL  565 (582)
T ss_pred             CCHHHHHHHHHHHHHH-hCCCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999988765 44699999999998865 5999999999999999998765

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.70  E-value=1.5e-17  Score=145.04  Aligned_cols=179  Identities=15%  Similarity=0.231  Sum_probs=111.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      =+++++|++||||||+++.|.+.           .++..|.+.++|.+++    +... ...+....-..+  |..  +|
T Consensus       356 e~vaiVG~sGsGKSTl~~LL~r~-----------~~~~~G~I~idg~dI~----~i~~-~~lr~~I~~V~Q--d~~--LF  415 (567)
T COG1132         356 EKVAIVGPSGSGKSTLIKLLLRL-----------YDPTSGEILIDGIDIR----DISL-DSLRKRIGIVSQ--DPL--LF  415 (567)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCeEEECCEehh----hcCH-HHHHHhccEEcc--cce--ee
Confidence            47899999999999999999998           4445677777664431    1110 000000000000  111  11


Q ss_pred             eCC--------Cc-ccHHHHHHHHHH------HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703           95 DIT--------RR-SSFDSVKRWLEE------LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS  157 (220)
Q Consensus        95 d~~--------~~-~~~~~~~~~~~~------l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S  157 (220)
                      +.+        ++ .+.+++.+..+.      +... ++..-..+.-+-..+.....+....||++++++++.++|  ||
T Consensus       416 ~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l-p~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTS  494 (567)
T COG1132         416 SGTIRENIALGRPDATDEEIEEALKLANAHEFIANL-PDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATS  494 (567)
T ss_pred             cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC-cccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence            110        01 122333222221      2222 111222222122333333334445588999999999999  99


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          158 ALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       158 a~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ++|..+-..+.+.+.+.. +++|.++++|+++.+.. ||+|+||++|++++.|+++++.
T Consensus       495 alD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl  551 (567)
T COG1132         495 ALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELL  551 (567)
T ss_pred             ccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHH
Confidence            999999999999888665 56788889999999887 9999999999999999998864

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.70  E-value=1.2e-18  Score=141.61  Aligned_cols=74  Identities=18%  Similarity=0.213  Sum_probs=67.5

Q ss_pred             HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      -+++++.++++.++|  +|++|..+...+.+.|.++. ++.+++++||+++.+..+||++++|++|++++.|+++++
T Consensus       236 LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~-~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l  311 (329)
T PRK14257        236 IARAIALEPEVLLMDEPTSALDPIATAKIEELILELK-KKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI  311 (329)
T ss_pred             HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            377999999999999  99999999999888777654 468999999999999999999999999999999999886

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.70  E-value=3.1e-18  Score=133.39  Aligned_cols=78  Identities=15%  Similarity=0.152  Sum_probs=70.5

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      ....+++++.++++.++|  ++++|..+.+.+.+.+.++..+ +.+++++||++.++..+||++++|++|++++.|++++
T Consensus       137 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  216 (235)
T cd03299         137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEE  216 (235)
T ss_pred             HHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence            344477999999999999  9999999999999999988766 8999999999999999999999999999999998765


Q ss_pred             c
Q 027703          215 F  215 (220)
Q Consensus       215 ~  215 (220)
                      +
T Consensus       217 ~  217 (235)
T cd03299         217 V  217 (235)
T ss_pred             H
Confidence            4

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=3.6e-18  Score=132.90  Aligned_cols=73  Identities=19%  Similarity=0.226  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM  212 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~  212 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++++... +++++|++|+++..|+-
T Consensus       154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~~  229 (233)
T PRK11629        154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELSL  229 (233)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEecc
Confidence            33477999999999999  9999999999999999988764 79999999999998875 69999999999887763

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.70  E-value=3.4e-17  Score=121.72  Aligned_cols=142  Identities=16%  Similarity=0.182  Sum_probs=99.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .++|+|+||+|||||++.|.+...           +..+.+.+++..+.    +.+         ..+ +  ..+.+++.
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~~-----------~~~G~i~~~g~~~~----~~~---------~~~-~--~~i~~~~q   80 (173)
T cd03230          28 IYGLLGPNGAGKTTLIKIILGLLK-----------PDSGEIKVLGKDIK----KEP---------EEV-K--RRIGYLPE   80 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC-----------CCCeEEEECCEEcc----cch---------Hhh-h--ccEEEEec
Confidence            489999999999999999999842           24566777764321    000         011 1  11233333


Q ss_pred             CCCcccHH--HHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHH
Q 027703           96 ITRRSSFD--SVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVV  171 (220)
Q Consensus        96 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l  171 (220)
                      ...  -+.  .+.+.   +.                 +.....+...-+++++.++++.++|  ++++|..+...+.+.+
T Consensus        81 ~~~--~~~~~tv~~~---~~-----------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l  138 (173)
T cd03230          81 EPS--LYENLTVREN---LK-----------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL  138 (173)
T ss_pred             CCc--cccCCcHHHH---hh-----------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            211  111  11111   10                 3332333445577999999999999  9999999999999999


Q ss_pred             HHHHHHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703          172 IREIYSNISRKVLNSDAYKAELSVNRVTLVKDGAN  206 (220)
Q Consensus       172 ~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~  206 (220)
                      .+...++.+++++||+.+++..+||++++|++|++
T Consensus       139 ~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         139 RELKKEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             HHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            98877678999999999999999999999999975

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.70  E-value=5.4e-18  Score=145.98  Aligned_cols=76  Identities=12%  Similarity=0.072  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      ..-+++++.++++.++|  +|++|..+...+.+.|.++..++.+++++|||++++..+||++++|++|+++..++..+
T Consensus       418 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~  495 (510)
T PRK09700        418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRD  495 (510)
T ss_pred             HHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCcc
Confidence            33466999999999999  99999999999999999887668899999999999999999999999999998887633

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.70  E-value=3.4e-19  Score=169.45  Aligned_cols=89  Identities=17%  Similarity=0.259  Sum_probs=77.0

Q ss_pred             CcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccce
Q 027703          120 VGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNR  197 (220)
Q Consensus       120 ~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~  197 (220)
                      ..-++.|+|+.+..        |++++.+|++.++|  ++++|+.+...+++.|.++..++.+++++||+++++..+|||
T Consensus      2068 ~~~LSGGqKqRLsl--------A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDr 2139 (2272)
T TIGR01257      2068 AGTYSGGNKRKLST--------AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTR 2139 (2272)
T ss_pred             hhhCCHHHHHHHHH--------HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence            33455555555443        55999999999999  999999999999999998877789999999999999999999


Q ss_pred             eeeeecCCCCCCCCCcccc
Q 027703          198 VTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       198 ~~~~~~G~~~~~g~~~~~~  216 (220)
                      +++|++|++++.|+++++.
T Consensus      2140 V~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257      2140 LAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred             EEEEECCEEEEECCHHHHH
Confidence            9999999999999988763

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.70  E-value=1.5e-15  Score=132.15  Aligned_cols=159  Identities=20%  Similarity=0.248  Sum_probs=111.0

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCc--CCC-----CC--------cccceeeeeEEEEEe---CCeEEEEEEEecCCcc
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNE--FDS-----NS--------KATIGVEFQTQVVDI---DGKEVKAQIWDTAGQE   74 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~--~~~-----~~--------~~t~~~~~~~~~i~~---~~~~~~~~~~d~~g~~   74 (220)
                      ..-+++|+|..++|||||+.+|+...  +..     ..        ...+++......+.+   ++..+.+++|||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            34579999999999999999997642  111     00        111222222222222   4557889999999999


Q ss_pred             hhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC---
Q 027703           75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL---  151 (220)
Q Consensus        75 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~---  151 (220)
                      ++...+..++..+|++++|+|+++....+....|....    ....|+++++||.|+....  .......+....++   
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  159 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDAS  159 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcc
Confidence            99888888999999999999999877666655543322    2357899999999986432  11122233333344   


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          152 FFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       152 ~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      .++.+||+++.|+.+++++|.+.+..
T Consensus       160 ~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        160 DAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHhCcc
Confidence            37889999999999999999887753

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.70  E-value=4.3e-18  Score=133.84  Aligned_cols=76  Identities=13%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.+.. ++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14247        155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV  232 (250)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence            34488999999999999  99999999999999998874 478999999999999999999999999999999988765

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.70  E-value=1.1e-15  Score=129.40  Aligned_cols=158  Identities=25%  Similarity=0.193  Sum_probs=105.9

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-----------h
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-----------V   79 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-----------~   79 (220)
                      ...++|+++|.+|+|||||+++|++.... ....++.+.+.....+..++  ..+.+|||+|......           .
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            35699999999999999999999987532 23333334443334444444  4567899999642211           1


Q ss_pred             hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHH-HHHHH----hCCeEE
Q 027703           80 TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGK-SLAEE----EGLFFM  154 (220)
Q Consensus        80 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~-~~~~~----~~~~~~  154 (220)
                      ....+..+|++++|+|++++.+.+... ++..+..   ...|+++++||+|+....  ...+.. .+...    ..++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~--~~~~~~~~~~~~l~~~~~~~i~  322 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEK--TMEEFKKELRRRLPFLDYAPIV  322 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHH--HHHHHHHHHHHhcccccCCCEE
Confidence            123567899999999999887776653 2233322   247899999999986321  111211 11111    246889


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHH
Q 027703          155 ETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       155 ~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      .+||+++.|+.++++.+.+...+
T Consensus       323 ~~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        323 FISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999877654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.70  E-value=4.8e-18  Score=145.98  Aligned_cols=78  Identities=10%  Similarity=0.149  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..-|++++.++++.++|  ++++|..+...+.+.|.++..++.+++++||+++++..+||++++|++|+++..|+++++.
T Consensus       404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  483 (501)
T PRK10762        404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT  483 (501)
T ss_pred             HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence            33477999999999999  9999999999999999988766889999999999999999999999999999999888763

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.70  E-value=6.3e-19  Score=138.78  Aligned_cols=77  Identities=16%  Similarity=0.142  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++. ++.+++++||+++++..+||++++|++|+++..|+++++.
T Consensus       158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14242        158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF  236 (253)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            33488999999999999  99999999999999998874 4789999999999999999999999999999999887653

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.70  E-value=5.9e-19  Score=137.21  Aligned_cols=77  Identities=16%  Similarity=0.176  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..+ +.++++++|+++++..+||++++|++|+++..|+++++
T Consensus       139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~  218 (232)
T cd03300         139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI  218 (232)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence            44488999999999999  9999999999999999988776 89999999999999999999999999999999986654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.70  E-value=1.3e-18  Score=150.41  Aligned_cols=77  Identities=13%  Similarity=0.171  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.+|++.++|  ++++|+.+...+++.+.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       165 v~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~  244 (529)
T PRK15134        165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL  244 (529)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            34477999999999999  9999999999999999988766 78999999999999999999999999999999987765

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.9e-17  Score=138.95  Aligned_cols=177  Identities=14%  Similarity=0.192  Sum_probs=109.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcch--hhhhhHHhhc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQER--FRAVTSAYYR   85 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~~--~~~~~~~~~~   85 (220)
                      +++++|++|+|||||++.|.|..           .++.|.+.++|....-        ++-=+++++.  ......+   
T Consensus       349 ~talvG~SGaGKSTLl~lL~G~~-----------~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireN---  414 (559)
T COG4988         349 LTALVGASGAGKSTLLNLLLGFL-----------APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN---  414 (559)
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC-----------CCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHH---
Confidence            68999999999999999999984           3356778787744310        0000111100  0001111   


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHH--HHhhC--CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccC
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEE--LTTHC--DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSAL  159 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~--l~~~~--~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~  159 (220)
                           +.+++.  ..+-+++..+.+.  +....  ++.....+.-+-..++....+...-+|++..+.++.++|  |+.+
T Consensus       415 -----i~l~~~--~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~L  487 (559)
T COG4988         415 -----ILLARP--DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHL  487 (559)
T ss_pred             -----hhccCC--cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCC
Confidence                 111111  1234444444443  11111  111221222222222222223333477888888999999  9999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          160 DSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      |-++-+.+.+.|.+..++ ++++++||+++.+.. +|+|++|++|+++++|+++++
T Consensus       488 D~etE~~i~~~l~~l~~~-ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L  541 (559)
T COG4988         488 DAETEQIILQALQELAKQ-KTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEEL  541 (559)
T ss_pred             CHhHHHHHHHHHHHHHhC-CeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHH
Confidence            999988888877666555 999999999999885 999999999999999999875

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.69  E-value=4.6e-16  Score=117.18  Aligned_cols=159  Identities=22%  Similarity=0.210  Sum_probs=106.5

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCC------------------cccceeeeeEEEEEeCCeEEEEEEEecCCcc
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNS------------------KATIGVEFQTQVVDIDGKEVKAQIWDTAGQE   74 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~------------------~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~   74 (220)
                      ...+|+++|+.++|||||+.+|+...-....                  ....+.......+........+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            3678999999999999999999865422111                  1122222233333312345688899999999


Q ss_pred             hhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC-CHHHHH-HHHHHh---
Q 027703           75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV-STEEGK-SLAEEE---  149 (220)
Q Consensus        75 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~-~~~~~~-~~~~~~---  149 (220)
                      .+..........+|++++|+|+.+....... +.+..+...   ..|++++.||.|+...+-. ..++.. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeecccccccccc-ccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            8888777888999999999999876554432 333333332   5778999999997621100 011122 333332   


Q ss_pred             ---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703          150 ---GLFFMETSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       150 ---~~~~~~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                         .++++.+||+++.|+.++++.+.+.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence               35789999999999999999998765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.69  E-value=4.4e-18  Score=146.82  Aligned_cols=77  Identities=17%  Similarity=0.199  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.+|++.++|  ++++|+.+...+++.+.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       177 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  256 (520)
T TIGR03269       177 VVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEV  256 (520)
T ss_pred             HHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHH
Confidence            34477999999999999  9999999999999999988765 78999999999999999999999999999998887653

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.69  E-value=2.9e-18  Score=135.05  Aligned_cols=76  Identities=13%  Similarity=0.140  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++.. +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       158 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  235 (253)
T PRK14267        158 LVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV  235 (253)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            33488999999999999  999999999999999998754 68999999999999999999999999999999987664

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.69  E-value=3.7e-17  Score=123.70  Aligned_cols=155  Identities=19%  Similarity=0.138  Sum_probs=102.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .++++|+||+|||||++.|.+...   +      .+..+.+.+++..+.-           .    .+ .  ..+.+++.
T Consensus        37 ~~~l~G~nGsGKStLl~~i~Gl~~---~------~~~~G~i~~~g~~~~~-----------~----~~-~--~~i~~~~q   89 (194)
T cd03213          37 LTAIMGPSGAGKSTLLNALAGRRT---G------LGVSGEVLINGRPLDK-----------R----SF-R--KIIGYVPQ   89 (194)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC---C------CCCceEEEECCEeCch-----------H----hh-h--heEEEccC
Confidence            589999999999999999999841   0      2345677777654310           0    00 0  11222322


Q ss_pred             CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~  173 (220)
                      .........+.+.+...... .            .+.........-+++++.++++.++|  ++++|..+...+++.+.+
T Consensus        90 ~~~~~~~~t~~~~i~~~~~~-~------------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~  156 (194)
T cd03213          90 DDILHPTLTVRETLMFAAKL-R------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRR  156 (194)
T ss_pred             cccCCCCCcHHHHHHHHHHh-c------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            11100000111111110000 0            33333334455578999999999999  999999999999999988


Q ss_pred             HHHHHhhhhhcCcchh-hhccccceeeeeecCCCCCCC
Q 027703          174 EIYSNISRKVLNSDAY-KAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       174 ~~~~~~~~~~~~h~~~-~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      +..++.++++++|+++ ++..+||++++|++|++++.|
T Consensus       157 ~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~  194 (194)
T cd03213         157 LADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG  194 (194)
T ss_pred             HHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence            7666889999999996 788899999999999987654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.69  E-value=1.5e-17  Score=121.07  Aligned_cols=177  Identities=15%  Similarity=0.124  Sum_probs=111.1

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEE-EEEEecCC---------cchhhhhhHHhhcC
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVK-AQIWDTAG---------QERFRAVTSAYYRG   86 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~-~~~~d~~g---------~~~~~~~~~~~~~~   86 (220)
                      +.++|++|||||||++.|...+-+           ..+.+.+++.++. +.-.++|-         |+.-.......+.+
T Consensus        31 ~fl~GpSGAGKSTllkLi~~~e~p-----------t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeN   99 (223)
T COG2884          31 VFLTGPSGAGKSTLLKLIYGEERP-----------TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYEN   99 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHhhhcC-----------CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhh
Confidence            568999999999999999998654           3455555553321 10011111         11000011122222


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHH--HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCC
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDST  162 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~  162 (220)
                      ....+-+.-....+--..+.+.+..+  ......-++.++.|.++.        ...|++++.+|.+.+.|  |..+|+.
T Consensus       100 VA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQR--------vaIARAiV~~P~vLlADEPTGNLDp~  171 (223)
T COG2884         100 VALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQR--------VAIARAIVNQPAVLLADEPTGNLDPD  171 (223)
T ss_pred             hhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHH--------HHHHHHHccCCCeEeecCCCCCCChH
Confidence            22212222222111222222222221  111111233344444444        44577999999999999  9999999


Q ss_pred             CHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703          163 NVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM  212 (220)
Q Consensus       163 ~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~  212 (220)
                      .-.++++.+.++...+.|+++.|||.+.+.++..|++.+++|+++.+...
T Consensus       172 ~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~  221 (223)
T COG2884         172 LSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR  221 (223)
T ss_pred             HHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence            99999999999989999999999999999999999999999999887654

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.69  E-value=1.6e-18  Score=137.65  Aligned_cols=75  Identities=19%  Similarity=0.165  Sum_probs=68.2

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      .-+++++.++++.++|  ++++|..+...+.+.|.++.. +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~  253 (271)
T PRK14238        177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI  253 (271)
T ss_pred             HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            3477999999999999  999999999999998887754 68999999999999999999999999999999987764

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.69  E-value=4.6e-18  Score=134.81  Aligned_cols=76  Identities=16%  Similarity=0.148  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++.. +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  249 (267)
T PRK14235        172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM  249 (267)
T ss_pred             HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            33478999999999999  999999999999999987754 68999999999999999999999999999999987654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.69  E-value=3.5e-18  Score=147.70  Aligned_cols=76  Identities=14%  Similarity=0.208  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..+++++.++++.++|  ++++|..+...+++.|.++..+ +.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus       435 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  513 (529)
T PRK15134        435 AIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV  513 (529)
T ss_pred             HHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHH
Confidence            3466999999999999  9999999999999999998876 78999999999999999999999999999999988765

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.69  E-value=7.4e-16  Score=108.96  Aligned_cols=135  Identities=25%  Similarity=0.259  Sum_probs=96.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc----hhhhhhHHhhcCCcEEE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE----RFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~----~~~~~~~~~~~~~~~~i   91 (220)
                      ||+++|+.|||||||+++|.+...  .+..|+.       +.+.+     .+.||||..    .+.........+++.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~-------i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQA-------IEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccce-------eEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999999754  2333322       22222     347899853    33444445567899999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~  170 (220)
                      ++.|++++.+.-.-  .   +....  +.|++-|.+|.|+.. .....+.++.+++..++ .+|.+|+.+++|++++.++
T Consensus        69 ll~dat~~~~~~pP--~---fa~~f--~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFPP--G---FASMF--NKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCCc--h---hhccc--CCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            99999886432211  0   11111  468999999999873 34467778888888887 5788999999999999998


Q ss_pred             HH
Q 027703          171 VI  172 (220)
Q Consensus       171 l~  172 (220)
                      |.
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            75

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.69  E-value=7.1e-18  Score=129.22  Aligned_cols=171  Identities=18%  Similarity=0.249  Sum_probs=113.7

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE------------------EEEEEEecCCcc
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE------------------VKAQIWDTAGQE   74 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~------------------~~~~~~d~~g~~   74 (220)
                      +.-.++++|+||+||||++++|+|...|..+           .+.++|..                  ..-..||.|-.+
T Consensus        49 ~G~ivgflGaNGAGKSTtLKmLTGll~p~~G-----------~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d  117 (325)
T COG4586          49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSG-----------KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD  117 (325)
T ss_pred             CCcEEEEEcCCCCcchhhHHHHhCccccCCC-----------eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence            3456899999999999999999999666443           33333310                  122346666333


Q ss_pred             hhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHh-h--CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC
Q 027703           75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTT-H--CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL  151 (220)
Q Consensus        75 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~-~--~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~  151 (220)
                      .+. ....          ++++.+. .|.+-...+.++.. .  ...+...++.|.+..        .+-+.+++..|++
T Consensus       118 s~~-v~~~----------Iy~Ipd~-~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmr--------aeLaaaLLh~p~V  177 (325)
T COG4586         118 SLE-VLKL----------IYEIPDD-EFAERLDFLTEILDLEGFLKWPVRKLSLGQRMR--------AELAAALLHPPKV  177 (325)
T ss_pred             hHH-HHHH----------HHhCCHH-HHHHHHHHHHHHhcchhhhhhhhhhccchHHHH--------HHHHHHhcCCCcE
Confidence            221 1111          1222221 23332222222211 1  122233344443333        3335688889999


Q ss_pred             eEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          152 FFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       152 ~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      .|+|  |-.+|=.-...+.+.+.+..++ +.|+++.||+++.+..+|+||++|+.|+++++|+.++
T Consensus       178 LfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~  243 (325)
T COG4586         178 LFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQ  243 (325)
T ss_pred             EEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHH
Confidence            9999  8899999999999999999877 8999999999999999999999999999999988654

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.69  E-value=2.4e-17  Score=146.65  Aligned_cols=175  Identities=16%  Similarity=0.187  Sum_probs=108.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcch-h-hhhhHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQER-F-RAVTSAYY   84 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~~-~-~~~~~~~~   84 (220)
                      =+++|+|++|||||||++.|++..           ++..|.+.++|.++.-        .+--+++.+. + .....+. 
T Consensus       480 e~vaIvG~sGsGKSTLlklL~gl~-----------~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi-  547 (686)
T TIGR03797       480 EFVAIVGPSGSGKSTLLRLLLGFE-----------TPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENI-  547 (686)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHH-
Confidence            368999999999999999999994           4456777777754321        0000111100 0 0011110 


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHH------HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--e
Q 027703           85 RGAVGALVVYDITRRSSFDSVKRWLEE------LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--T  156 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~  156 (220)
                             ...+   +.+.+++.+..+.      +... +......+.-+-..++....+...-||++.+++++.++|  |
T Consensus       548 -------~~~~---~~~~e~i~~al~~a~l~~~i~~l-p~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpT  616 (686)
T TIGR03797       548 -------AGGA---PLTLDEAWEAARMAGLAEDIRAM-PMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT  616 (686)
T ss_pred             -------hcCC---CCCHHHHHHHHHHcCcHHHHHhc-cccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                   0111   1223333332222      1111 111111111111223333333344488999999999999  9


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          157 SALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      |++|..+...+.+.+.+.   +.|+++++|+++.+. .||+|++|++|+++++|+++++.
T Consensus       617 S~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~-~~D~Iivl~~G~iv~~G~~~~Ll  672 (686)
T TIGR03797       617 SALDNRTQAIVSESLERL---KVTRIVIAHRLSTIR-NADRIYVLDAGRVVQQGTYDELM  672 (686)
T ss_pred             cCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence            999999999999988765   579999999998876 59999999999999999988753

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.69  E-value=1.1e-17  Score=143.78  Aligned_cols=77  Identities=13%  Similarity=0.288  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|+.+...+.+.|.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (500)
T TIGR02633       150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM  228 (500)
T ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence            44477999999999999  999999999999999998876688999999999999999999999999999999987764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.69  E-value=2.7e-18  Score=135.12  Aligned_cols=76  Identities=13%  Similarity=0.107  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++.. +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14256        157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI  234 (252)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            33477999999999999  999999999999998888754 68999999999999999999999999999999998765

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.69  E-value=5.9e-17  Score=122.39  Aligned_cols=154  Identities=20%  Similarity=0.192  Sum_probs=101.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .++++|+||+|||||++.|.+....         .+..+.+.+++..+.         .       .+ +  ..+.+++.
T Consensus        35 ~~~l~G~nGsGKSTLl~~l~G~~~~---------~~~~G~i~~~g~~~~---------~-------~~-~--~~i~~~~q   86 (192)
T cd03232          35 LTALMGESGAGKTTLLDVLAGRKTA---------GVITGEILINGRPLD---------K-------NF-Q--RSTGYVEQ   86 (192)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcC---------CCcceEEEECCEehH---------H-------Hh-h--hceEEecc
Confidence            4899999999999999999987321         113466666664321         0       00 0  01122222


Q ss_pred             CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~  173 (220)
                      .........+.+.+...... .            .++........-+++++.++++.++|  ++++|..+...+++.+.+
T Consensus        87 ~~~~~~~~tv~~~l~~~~~~-~------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~  153 (192)
T cd03232          87 QDVHSPNLTVREALRFSALL-R------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKK  153 (192)
T ss_pred             cCccccCCcHHHHHHHHHHH-h------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            11100000111111110000 0            33333334455577999999999999  999999999999999988


Q ss_pred             HHHHHhhhhhcCcchh-hhccccceeeeeec-CCCCCCC
Q 027703          174 EIYSNISRKVLNSDAY-KAELSVNRVTLVKD-GANSSKG  210 (220)
Q Consensus       174 ~~~~~~~~~~~~h~~~-~~~~~a~~~~~~~~-G~~~~~g  210 (220)
                      ....+.+++++||+++ .+..+||++++|++ |++++.|
T Consensus       154 ~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         154 LADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             HHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            7666889999999998 57889999999999 9998765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.69  E-value=5.1e-18  Score=134.68  Aligned_cols=77  Identities=14%  Similarity=0.097  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeec-----------CC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKD-----------GA  205 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~-----------G~  205 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++. ++.+++++||+++++..+||++++|++           |+
T Consensus       163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~  241 (269)
T PRK14259        163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY  241 (269)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence            33477999999999999  99999999999999888774 468899999999999999999999996           56


Q ss_pred             CCCCCCCcccc
Q 027703          206 NSSKGSMMDFS  216 (220)
Q Consensus       206 ~~~~g~~~~~~  216 (220)
                      ++++|+++++.
T Consensus       242 ~~~~~~~~~~~  252 (269)
T PRK14259        242 LVEFNETKKIF  252 (269)
T ss_pred             EEEeCCHHHHH
Confidence            89999887763

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.68  E-value=2e-18  Score=136.42  Aligned_cols=76  Identities=14%  Similarity=0.175  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++.. +.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus       164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  241 (259)
T PRK14274        164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM  241 (259)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            33488999999999999  999999999999998888754 78999999999999999999999999999999998765

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.68  E-value=9.7e-18  Score=129.90  Aligned_cols=72  Identities=15%  Similarity=0.090  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcch-hhhccccceeeeeecCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDA-YKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~-~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.+...++.++++++|++ .++..+||++++|++|+++++|
T Consensus       152 l~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             HHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            34478999999999999  999999999999998888766678999999999 5899999999999999998775

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.68  E-value=3.4e-18  Score=134.09  Aligned_cols=76  Identities=18%  Similarity=0.193  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.+... +.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus       151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  228 (246)
T PRK14269        151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF  228 (246)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHH
Confidence            33488999999999999  999999999999999988754 78999999999999999999999999999999987765

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.68  E-value=2.8e-18  Score=136.09  Aligned_cols=76  Identities=13%  Similarity=0.129  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+++.|.++. ++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  249 (267)
T PRK14237        172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI  249 (267)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            33488999999999999  99999999999999998874 468999999999999999999999999999999998765

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.68  E-value=2.3e-15  Score=123.70  Aligned_cols=154  Identities=21%  Similarity=0.204  Sum_probs=112.5

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh--------hhHHh
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------VTSAY   83 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------~~~~~   83 (220)
                      ..+|++|+|+||||||||+|+|++....-.++ +..+.+.-...+.++|  +.+.+.||.|......        .....
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            35899999999999999999999997665444 5556777777888887  6788899999653222        23456


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN  163 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (220)
                      ..+||.+++++|.+.+..-.+..- +.    ......|+++|.||.||........     .....+..++.+|++++.|
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~G  363 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGEG  363 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCccC
Confidence            789999999999988633333211 11    2345688999999999976442111     1112344688899999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027703          164 VEAAFEVVIREIYSN  178 (220)
Q Consensus       164 v~~l~~~l~~~~~~~  178 (220)
                      ++.+.+.|.+.....
T Consensus       364 l~~L~~~i~~~~~~~  378 (454)
T COG0486         364 LDALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999988754

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.68  E-value=3.6e-17  Score=143.21  Aligned_cols=79  Identities=11%  Similarity=0.216  Sum_probs=68.4

Q ss_pred             CCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCc
Q 027703          136 DVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMM  213 (220)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~  213 (220)
                      .+....||++++++++.++|  ||++|..+...+.+.+.+. .+++|+++++|+++.+. .||+|++|++|+++++|+.+
T Consensus       491 rQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~-~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G~~~  568 (588)
T PRK11174        491 AQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQGDYA  568 (588)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEecChHHHH-hCCEEEEEeCCeEeecCCHH
Confidence            33444588999999999999  9999999999999877655 45799999999998876 59999999999999999988


Q ss_pred             ccc
Q 027703          214 DFS  216 (220)
Q Consensus       214 ~~~  216 (220)
                      ++.
T Consensus       569 eL~  571 (588)
T PRK11174        569 ELS  571 (588)
T ss_pred             HHH
Confidence            763

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.68  E-value=9.8e-18  Score=144.08  Aligned_cols=77  Identities=12%  Similarity=0.121  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.+.++..++.+++++|||++++..+||++++|++|+++..++..++
T Consensus       412 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  490 (500)
T TIGR02633       412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL  490 (500)
T ss_pred             HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence            33477999999999999  999999999999999988877788999999999999999999999999999988776554

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.68  E-value=5.6e-17  Score=144.83  Aligned_cols=176  Identities=15%  Similarity=0.166  Sum_probs=109.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcc-hhh-hhhHHhhc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQE-RFR-AVTSAYYR   85 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~-~~~-~~~~~~~~   85 (220)
                      +++|+|++|||||||++.|.|...           +..|.+.++|.++.-        .+--+++.. -+. ....+.  
T Consensus       507 ~vaIvG~sGsGKSTLlklL~gl~~-----------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi--  573 (710)
T TIGR03796       507 RVALVGGSGSGKSTIAKLVAGLYQ-----------PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNL--  573 (710)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-----------CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHh--
Confidence            789999999999999999999943           355677777643310        000011111 001 111111  


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHH-----HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEE-----LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA  158 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa  158 (220)
                            ..++.  ..+.+++.+..+.     .-...+......+.-+-..+.....+...-||++++++++.++|  ||+
T Consensus       574 ------~l~~~--~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~  645 (710)
T TIGR03796       574 ------TLWDP--TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSA  645 (710)
T ss_pred             ------hCCCC--CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECcccc
Confidence                  11111  1223333322222     11111111122222112223333333344488999999999999  999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          159 LDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      +|..+...+++.+.+   .+.|++++||+++.+.. ||+|++|++|+++++|+++++.
T Consensus       646 LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll  699 (710)
T TIGR03796       646 LDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELW  699 (710)
T ss_pred             CCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHH
Confidence            999999999998875   47999999999998765 9999999999999999988864

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.68  E-value=5.4e-17  Score=121.62  Aligned_cols=150  Identities=14%  Similarity=0.139  Sum_probs=99.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .++++|+||+|||||++.|.+...+           ..+.+.+++..+.       .....     ...+.  .+.+++.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~-------~~~~~-----~~~~~--~i~~~~q   82 (182)
T cd03215          28 IVGIAGLVGNGQTELAEALFGLRPP-----------ASGEITLDGKPVT-------RRSPR-----DAIRA--GIAYVPE   82 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECC-------ccCHH-----HHHhC--CeEEecC
Confidence            5899999999999999999998433           4566667664321       10000     01111  1233332


Q ss_pred             CCC-cccHH--HHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHH
Q 027703           96 ITR-RSSFD--SVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEV  170 (220)
Q Consensus        96 ~~~-~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~  170 (220)
                      -.. ..-+.  .+.+.+.....        ++.|.|        ....-+++++.++++.++|  ++++|..+...+.+.
T Consensus        83 ~~~~~~~~~~~t~~e~l~~~~~--------LS~G~~--------qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~  146 (182)
T cd03215          83 DRKREGLVLDLSVAENIALSSL--------LSGGNQ--------QKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL  146 (182)
T ss_pred             CcccCcccCCCcHHHHHHHHhh--------cCHHHH--------HHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence            110 00010  12222111100        233333        3344567999999999999  999999999999999


Q ss_pred             HHHHHHHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703          171 VIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGAN  206 (220)
Q Consensus       171 l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~  206 (220)
                      +.+...++.++++++|+++.+..+||++++|++|++
T Consensus       147 l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         147 IRELADAGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            988866678999999999999999999999999975

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.68  E-value=3.2e-18  Score=135.15  Aligned_cols=76  Identities=13%  Similarity=0.156  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeee------cCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVK------DGANSSKG  210 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~------~G~~~~~g  210 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.|.++. ++.+++++||+++++..+||++++|.      +|+++..|
T Consensus       157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~  235 (258)
T PRK14241        157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID  235 (258)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecC
Confidence            34478999999999999  99999999999999888874 46899999999999999999999997      89999999


Q ss_pred             CCccc
Q 027703          211 SMMDF  215 (220)
Q Consensus       211 ~~~~~  215 (220)
                      +++++
T Consensus       236 ~~~~~  240 (258)
T PRK14241        236 DTEKI  240 (258)
T ss_pred             CHHHH
Confidence            87664

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.68  E-value=1e-17  Score=143.61  Aligned_cols=76  Identities=9%  Similarity=0.133  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      ...+++++.++++.++|  |+++|..+..++++.+.++..++.+++++||+++++..+||++++|++|+++..++.++
T Consensus       400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~  477 (491)
T PRK10982        400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT  477 (491)
T ss_pred             HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence            33466999999999999  99999999999999998877778999999999999999999999999999997776543

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.68  E-value=5.3e-17  Score=120.69  Aligned_cols=142  Identities=17%  Similarity=0.194  Sum_probs=96.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .++++|++|+|||||++.|.+...           +..+.+.+++..+.    +.+   . .    .+ +.  .+.+++.
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~~~-----------~~~G~i~~~g~~~~----~~~---~-~----~~-~~--~i~~~~q   83 (173)
T cd03246          30 SLAIIGPSGSGKSTLARLILGLLR-----------PTSGRVRLDGADIS----QWD---P-N----EL-GD--HVGYLPQ   83 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhccC-----------CCCCeEEECCEEcc----cCC---H-H----HH-Hh--heEEECC
Confidence            489999999999999999999843           34566667664321    111   0 0    01 11  1223322


Q ss_pred             CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~  173 (220)
                      -  ..-+..  ...+.+          ++.|++        +...-+++++.++++.++|  ++++|..+...+.+.+.+
T Consensus        84 ~--~~~~~~--tv~~~l----------LS~G~~--------qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~  141 (173)
T cd03246          84 D--DELFSG--SIAENI----------LSGGQR--------QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA  141 (173)
T ss_pred             C--CccccC--cHHHHC----------cCHHHH--------HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence            1  111110  111111          222333        3344577999999999999  999999999999999988


Q ss_pred             HHHHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703          174 EIYSNISRKVLNSDAYKAELSVNRVTLVKDGAN  206 (220)
Q Consensus       174 ~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~  206 (220)
                      +..++.+++++||+++.+. +||++++|++|++
T Consensus       142 ~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i  173 (173)
T cd03246         142 LKAAGATRIVIAHRPETLA-SADRILVLEDGRV  173 (173)
T ss_pred             HHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence            8766889999999999885 7999999999975

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=8.1e-17  Score=137.87  Aligned_cols=169  Identities=17%  Similarity=0.225  Sum_probs=108.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE-------EEEecCCcch---hhhhhHHhhc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA-------QIWDTAGQER---FRAVTSAYYR   85 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~-------~~~d~~g~~~---~~~~~~~~~~   85 (220)
                      .+|++||+|+||||+.+.|...           +++..|.+.++|..++-       .-.-+.||++   ......+.. 
T Consensus       496 ~vALVGPSGsGKSTiasLL~rf-----------Y~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~-  563 (716)
T KOG0058|consen  496 VVALVGPSGSGKSTIASLLLRF-----------YDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIA-  563 (716)
T ss_pred             EEEEECCCCCCHHHHHHHHHHh-----------cCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHh-
Confidence            6899999999999999999998           44466777777754310       0011112221   011112211 


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHH------HHHHhhCC-------CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCe
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWL------EELTTHCD-------TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLF  152 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~------~~l~~~~~-------~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~  152 (220)
                            |-.+   ..+.+++...-      ..+....+       ++-..++.|.|+.        .+.||+++++|.+.
T Consensus       564 ------YG~~---~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQR--------IAIARALlr~P~VL  626 (716)
T KOG0058|consen  564 ------YGLD---NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQR--------IAIARALLRNPRVL  626 (716)
T ss_pred             ------cCCC---CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHH--------HHHHHHHhcCCCEE
Confidence                  1111   23333333221      11222211       1122344444444        45566999999999


Q ss_pred             EEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          153 FME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       153 ~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ++|  |||+|-++-..+-+. ++.+.++.|++++.|.+..++ .||+|+|+++|++++.|+.+|+
T Consensus       627 ILDEATSALDaeSE~lVq~a-L~~~~~~rTVlvIAHRLSTV~-~Ad~Ivvi~~G~V~E~G~h~eL  689 (716)
T KOG0058|consen  627 ILDEATSALDAESEYLVQEA-LDRLMQGRTVLVIAHRLSTVR-HADQIVVIDKGRVVEMGTHDEL  689 (716)
T ss_pred             EEechhhhcchhhHHHHHHH-HHHhhcCCeEEEEehhhhHhh-hccEEEEEcCCeEEecccHHHH
Confidence            999  999999996665554 445555699999999999987 5999999999999999988775

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.68  E-value=1.9e-15  Score=123.87  Aligned_cols=151  Identities=17%  Similarity=0.088  Sum_probs=108.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcchhh---------hhhHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR---------AVTSAYY   84 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~   84 (220)
                      ..|+|+|.||||||||+|+|.+....-..+ |.++.++..+...+.+..  +.+.||+|.....         .......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            579999999999999999999997665444 666777777888887754  7889999976322         1233466


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703           85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV  164 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (220)
                      ..||+++||+|.....+-.+  +.+..+..  ....|++++.||+|-..    ..+.+.++.+----.++.+||..+.|+
T Consensus        82 ~eADvilfvVD~~~Git~~D--~~ia~~Lr--~~~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~Hg~Gi  153 (444)
T COG1160          82 EEADVILFVVDGREGITPAD--EEIAKILR--RSKKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEHGRGI  153 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--hcCCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhhccCH
Confidence            88999999999976444333  23333322  23579999999999431    122233333323337888999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          165 EAAFEVVIREI  175 (220)
Q Consensus       165 ~~l~~~l~~~~  175 (220)
                      .++++.+.+.+
T Consensus       154 ~dLld~v~~~l  164 (444)
T COG1160         154 GDLLDAVLELL  164 (444)
T ss_pred             HHHHHHHHhhc
Confidence            99999999886

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.68  E-value=2.4e-18  Score=135.37  Aligned_cols=76  Identities=16%  Similarity=0.154  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+++.|.+... +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  234 (252)
T PRK14239        157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM  234 (252)
T ss_pred             HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            34477999999999999  999999999999998888754 68999999999999999999999999999999988765

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.68  E-value=6.1e-18  Score=145.98  Aligned_cols=77  Identities=13%  Similarity=0.179  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus       436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  515 (520)
T TIGR03269       436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI  515 (520)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            33477999999999999  9999999999999999988776 89999999999999999999999999999999987664

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.68  E-value=2.1e-18  Score=135.55  Aligned_cols=76  Identities=16%  Similarity=0.157  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++.. +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14262        155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI  232 (250)
T ss_pred             HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            33478999999999999  999999999999999998754 68999999999999999999999999999999987664

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.67  E-value=6.9e-17  Score=126.85  Aligned_cols=77  Identities=13%  Similarity=0.053  Sum_probs=68.4

Q ss_pred             CCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccc-cceeeeeecCCCCCCCCCc
Q 027703          137 VSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS-VNRVTLVKDGANSSKGSMM  213 (220)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~-a~~~~~~~~G~~~~~g~~~  213 (220)
                      .....+++++.+|++.++|  ++++|..+...+.+.+.++...+.+++++||+++.+... +|++++|++|+++..|+++
T Consensus       152 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~  231 (248)
T PRK09580        152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT  231 (248)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence            3344588999999999999  999999999999998887765578999999999999887 8999999999999999875

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.67  E-value=1.4e-16  Score=126.45  Aligned_cols=78  Identities=6%  Similarity=0.112  Sum_probs=68.8

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...-+++++.++++.++|  ++++|......+.+.|.+. ..+.++++++|+++.+.. |||+++|++|++++.|+++++
T Consensus       146 rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l  223 (275)
T cd03289         146 LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA-FADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKL  223 (275)
T ss_pred             HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHH
Confidence            344488999999999999  9999999999999988865 347899999999998875 999999999999999999887


Q ss_pred             cc
Q 027703          216 SC  217 (220)
Q Consensus       216 ~~  217 (220)
                      ..
T Consensus       224 ~~  225 (275)
T cd03289         224 LN  225 (275)
T ss_pred             hh
Confidence            54

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=3.7e-18  Score=134.28  Aligned_cols=76  Identities=14%  Similarity=0.182  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+++.+.++. ++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14251        156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM  233 (251)
T ss_pred             HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence            33488999999999999  99999999999999998874 468999999999999999999999999999999987664

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=4.8e-18  Score=134.83  Aligned_cols=76  Identities=14%  Similarity=0.143  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.++.. +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  250 (268)
T PRK14248        173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI  250 (268)
T ss_pred             HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            33478999999999999  999999999999998888754 58999999999999999999999999999999987654

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=7.6e-17  Score=133.98  Aligned_cols=172  Identities=15%  Similarity=0.203  Sum_probs=114.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcchhhhhhHHhhcC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQERFRAVTSAYYRG   86 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~~~~~~~~~~~~~   86 (220)
                      =||+|+|+|||||||+++.|+..           .+ +.|.+.++|.+++-        .+--.|+...  .+....+.+
T Consensus       379 ekVaIvG~nGsGKSTilr~LlrF-----------~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~--LFndTIl~N  444 (591)
T KOG0057|consen  379 EKVAIVGSNGSGKSTILRLLLRF-----------FD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSV--LFNDTILYN  444 (591)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH-----------hc-cCCcEEECCeeHhhhChHHhhhheeEeCCccc--ccchhHHHH
Confidence            48999999999999999999987           44 57888888865421        0001111100  000011111


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHH------HHhhC-------CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeE
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEE------LTTHC-------DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFF  153 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~------l~~~~-------~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (220)
                      ..      ..+...+++++.+.-+.      +....       .+.-..+++|.||.++.        +|++++++++.+
T Consensus       445 I~------YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsl--------aRa~lKda~Il~  510 (591)
T KOG0057|consen  445 IK------YGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSL--------ARAFLKDAPILL  510 (591)
T ss_pred             hh------cCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHH--------HHHHhcCCCeEE
Confidence            00      01112344443322111      22111       12233456666666554        559999999999


Q ss_pred             EE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          154 ME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       154 ~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      +|  ||++|-+.-.++++.+.. ...++|++++-|++..++. +|+|+++++|++.+.|+.+++.
T Consensus       511 ~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell  573 (591)
T KOG0057|consen  511 LDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELL  573 (591)
T ss_pred             ecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHh
Confidence            99  999999999999999888 6678999999999999885 9999999999999999987754

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=3.7e-18  Score=134.17  Aligned_cols=76  Identities=12%  Similarity=0.149  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++ .++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~  232 (250)
T PRK14245        155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI  232 (250)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence            34477999999999999  9999999999999999987 4578999999999999999999999999999999988765

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.67  E-value=1.8e-15  Score=127.48  Aligned_cols=155  Identities=17%  Similarity=0.157  Sum_probs=100.6

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhC--cCCC-----------------------------CCcccceeeeeEEEEEe
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARN--EFDS-----------------------------NSKATIGVEFQTQVVDI   58 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~i~~   58 (220)
                      ...++++|+++|..++|||||+.+|+..  .+..                             +...+.+.+...  ..+
T Consensus         3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~   80 (426)
T TIGR00483         3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKF   80 (426)
T ss_pred             CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEE
Confidence            3567799999999999999999999852  1111                             111233333333  334


Q ss_pred             CCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHH--HHHhhCCCCCcEEEEEecCCCCCCCC
Q 027703           59 DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLE--ELTTHCDTAVGRMLVGNKCDLDSIRD  136 (220)
Q Consensus        59 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~v~~k~Dl~~~~~  136 (220)
                      ......+.+||+||+..+.......+..+|++++|+|+++..++... .+..  .+.... ...++++++||.|+.....
T Consensus        81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~-~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~  158 (426)
T TIGR00483        81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQP-QTREHAFLARTL-GINQLIVAINKMDSVNYDE  158 (426)
T ss_pred             ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCC-chHHHHHHHHHc-CCCeEEEEEEChhccCccH
Confidence            44457889999999887765555566889999999999887533211 1111  122221 2357888999999864222


Q ss_pred             CC----HHHHHHHHHHhC-----CeEEEeccCCCCCHHHHH
Q 027703          137 VS----TEEGKSLAEEEG-----LFFMETSALDSTNVEAAF  168 (220)
Q Consensus       137 ~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~  168 (220)
                      ..    ..+...++...+     ++++++||+++.|+.+.+
T Consensus       159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            11    234555555543     578999999999998643

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.67  E-value=1.9e-17  Score=122.93  Aligned_cols=172  Identities=17%  Similarity=0.252  Sum_probs=108.4

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeC
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDI   96 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~   96 (220)
                      |.|+|.||+|||||+|.|.|.           ..+..+.+.+++.++.-  |-..   .-......+++++-+-- +-+.
T Consensus        35 vtViGsNGAGKSTlln~iaG~-----------l~~t~G~I~Idg~dVtk--~~~~---~RA~~larVfQdp~~gt-~~~l   97 (263)
T COG1101          35 VTVIGSNGAGKSTLLNAIAGD-----------LKPTSGQILIDGVDVTK--KSVA---KRANLLARVFQDPLAGT-APEL   97 (263)
T ss_pred             EEEEcCCCccHHHHHHHhhCc-----------cccCCceEEECceeccc--CCHH---HHhhHHHHHhcchhhCC-cccc
Confidence            789999999999999999998           55567888888865521  0000   00111112222221100 0000


Q ss_pred             CCc--------------ccH---HHHHHHHHH--------HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC
Q 027703           97 TRR--------------SSF---DSVKRWLEE--------LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL  151 (220)
Q Consensus        97 ~~~--------------~~~---~~~~~~~~~--------l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~  151 (220)
                      +-+              -++   .....++.+        +......++..++.|.++-+.-..        +.+..|++
T Consensus        98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~M--------Atl~~pki  169 (263)
T COG1101          98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLM--------ATLHPPKI  169 (263)
T ss_pred             cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHH--------HhcCCCcE
Confidence            000              000   011111111        122222334444455544443322        55667888


Q ss_pred             eEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCc
Q 027703          152 FFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMM  213 (220)
Q Consensus       152 ~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~  213 (220)
                      .++|  |.|+||.-...+++.-.+.+.+ +.|.+|+||++..|..|.+|.++|++|+|+.+-..+
T Consensus       170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~  234 (263)
T COG1101         170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE  234 (263)
T ss_pred             EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence            9999  9999999999999999999987 789999999999999999999999999999876543

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.67  E-value=4.9e-18  Score=130.24  Aligned_cols=76  Identities=8%  Similarity=-0.015  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|+.+...+.+.+.+... +.+++++||++..+..+||++++|++|+++..|+.++.
T Consensus       113 v~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  190 (213)
T PRK15177        113 LAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA  190 (213)
T ss_pred             HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence            34477999999999998  899999999999888876654 46799999999999999999999999999999887654

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=6e-17  Score=134.44  Aligned_cols=174  Identities=18%  Similarity=0.283  Sum_probs=109.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecC----------Cc-chhhhhhHHh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA----------GQ-ERFRAVTSAY   83 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~----------g~-~~~~~~~~~~   83 (220)
                      =||+|+|++|||||||++.+.+..           ++.+|.++.++..+.  -++..          +. .-|.....+.
T Consensus       365 EkvAIlG~SGsGKSTllqLl~~~~-----------~~~~G~i~~~g~~~~--~l~~~~~~e~i~vl~Qr~hlF~~Tlr~N  431 (573)
T COG4987         365 EKVAILGRSGSGKSTLLQLLAGAW-----------DPQQGSITLNGVEIA--SLDEQALRETISVLTQRVHLFSGTLRDN  431 (573)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhcc-----------CCCCCeeeECCcChh--hCChhhHHHHHhhhccchHHHHHHHHHH
Confidence            489999999999999999999984           445666777664332  11110          00 0011111111


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHH-HHHHHhhCC--------CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEE
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRW-LEELTTHCD--------TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFM  154 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~-~~~l~~~~~--------~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~  154 (220)
                      ++-+     .-|++|++-.+.++.. +.++....+        +.-.-++.|.++.+        ..+|.+.++.++-++
T Consensus       432 L~lA-----~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRL--------AlAR~LL~dapl~lL  498 (573)
T COG4987         432 LRLA-----NPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL--------ALARALLHDAPLWLL  498 (573)
T ss_pred             Hhhc-----CCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHH--------HHHHHHHcCCCeEEe
Confidence            1111     1133444333333210 111111111        11111233333332        236688888888899


Q ss_pred             E--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          155 E--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       155 ~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      |  |.++|+..-.++++.+.+..+ ++|++++||++.... .+|||+||++|+++++|+++++.
T Consensus       499 DEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~le-~~drIivl~~Gkiie~G~~~~Ll  560 (573)
T COG4987         499 DEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGLE-RMDRIIVLDNGKIIEEGTHAELL  560 (573)
T ss_pred             cCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccccHh-hcCEEEEEECCeeeecCCHHhhh
Confidence            8  999999999999997776655 799999999999977 59999999999999999998765

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.67  E-value=4.6e-18  Score=128.70  Aligned_cols=186  Identities=16%  Similarity=0.181  Sum_probs=115.3

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecC---CcchhhhhhHHhh
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA---GQERFRAVTSAYY   84 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~---g~~~~~~~~~~~~   84 (220)
                      ++..++.=+.+|+|+||||||||++.+++..++..+..+.    . +...-.+. ..   ||..   |... ......+.
T Consensus        51 sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~----~-G~~~G~~~-~~---~elrk~IG~vS-~~L~~~~~  120 (257)
T COG1119          51 SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTL----L-GRRFGKGE-TI---FELRKRIGLVS-SELHERFR  120 (257)
T ss_pred             ceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceee----e-eeeccCCc-ch---HHHHHHhCccC-HHHHhhcc
Confidence            3445555689999999999999999999997775433111    1 11111111 00   2222   1110 00111111


Q ss_pred             ----------cCCcEEEEEEe-CCCcccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC
Q 027703           85 ----------RGAVGALVVYD-ITRRSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL  151 (220)
Q Consensus        85 ----------~~~~~~i~v~d-~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~  151 (220)
                                ....+.+-+|- ..+...+..+..+++.+.  ...+.....++.|.|+-        .-.+|+++.+|.+
T Consensus       121 ~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr--------vLiaRALv~~P~L  192 (257)
T COG1119         121 VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR--------VLIARALVKDPEL  192 (257)
T ss_pred             cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH--------HHHHHHHhcCCCE
Confidence                      11111122222 122333444433333322  22222222233333333        3337799999999


Q ss_pred             eEEE--eccCCCCCHHHHHHHHHHHHHH--HhhhhhcCcchhhhccccceeeeeecCCCCCCCC
Q 027703          152 FFME--TSALDSTNVEAAFEVVIREIYS--NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS  211 (220)
Q Consensus       152 ~~~~--~Sa~~~~~v~~l~~~l~~~~~~--~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~  211 (220)
                      .++|  ++++|..+.+.+++.+.++...  ..+++++||..+++....+++.++++|+++.+|.
T Consensus       193 LiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         193 LILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             EEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence            9999  9999999999999999999987  7889999999999999999999999999999885

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.67  E-value=3.2e-15  Score=129.25  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=100.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCccccee--eeeEEEEEe--------------CCeEEEEEEEecCCcchhhhh
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGV--EFQTQVVDI--------------DGKEVKAQIWDTAGQERFRAV   79 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~--~~~~~~i~~--------------~~~~~~~~~~d~~g~~~~~~~   79 (220)
                      -|+++|.+++|||||+++|.+..+......+++.  .........              ......+.+|||||+..+...
T Consensus         6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l   85 (590)
T TIGR00491         6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL   85 (590)
T ss_pred             EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence            5999999999999999999998765443321111  111111110              000113789999999998888


Q ss_pred             hHHhhcCCcEEEEEEeCCCc---ccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC----CH--------HH---
Q 027703           80 TSAYYRGAVGALVVYDITRR---SSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV----ST--------EE---  141 (220)
Q Consensus        80 ~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~----~~--------~~---  141 (220)
                      +...+..+|++++|+|+++.   ++++.+.    .+.   ....|+++++||+|+......    ..        +.   
T Consensus        86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~  158 (590)
T TIGR00491        86 RKRGGALADLAILIVDINEGFKPQTQEALN----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ  158 (590)
T ss_pred             HHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence            88888999999999999874   3343332    222   235789999999998531100    00        00   


Q ss_pred             ---------HHHHHH--------------HhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          142 ---------GKSLAE--------------EEGLFFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       142 ---------~~~~~~--------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                               ...+..              ...++++.+||++++|+.++++++..+..
T Consensus       159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence                     001111              11467889999999999999998876554

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.67  E-value=9.1e-17  Score=143.41  Aligned_cols=177  Identities=14%  Similarity=0.139  Sum_probs=109.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcch-h-hhhhHHhhc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQER-F-RAVTSAYYR   85 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~~-~-~~~~~~~~~   85 (220)
                      +++|+|++|||||||++.|.+..           ++..|.+.++|.++.-        .+--+++.+. + .....+.. 
T Consensus       502 ~vaIvG~SGsGKSTLlklL~gl~-----------~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~-  569 (708)
T TIGR01193       502 KTTIVGMSGSGKSTLAKLLVGFF-----------QARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLL-  569 (708)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC-----------CCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHh-
Confidence            68999999999999999999984           3456777777743210        0000111110 0 11111110 


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHH-----HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEE-----LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA  158 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa  158 (220)
                             ... ....+.+++.+....     +-...+......+.-+-..+.....+...-||++.+++++.++|  ||+
T Consensus       570 -------l~~-~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~  641 (708)
T TIGR01193       570 -------LGA-KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSN  641 (708)
T ss_pred             -------ccC-CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcccc
Confidence                   000 011223333322222     11111111111221122333333334444588999999999999  999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          159 LDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      +|..+.+.+.+.+.+.  .+.|+++++|+++.+. .||++++|++|+++++|+.+++
T Consensus       642 LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L  695 (708)
T TIGR01193       642 LDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDEL  695 (708)
T ss_pred             CCHHHHHHHHHHHHHh--cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHH
Confidence            9999999999988763  5789999999999865 6999999999999999998775

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=4.6e-17  Score=146.62  Aligned_cols=176  Identities=17%  Similarity=0.242  Sum_probs=110.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC-------
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA-------   87 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~-------   87 (220)
                      -.++++|++||||||+++.|.+.           +++..|.+.++|.+++-  .+.+.   .+....-+.+.+       
T Consensus       380 ~~valVG~SGsGKST~i~LL~Rf-----------ydP~~G~V~idG~di~~--~~~~~---lr~~iglV~QePvlF~~tI  443 (1228)
T KOG0055|consen  380 QTVALVGPSGSGKSTLIQLLARF-----------YDPTSGEVLIDGEDIRN--LNLKW---LRSQIGLVSQEPVLFATTI  443 (1228)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh-----------cCCCCceEEEcCccchh--cchHH---HHhhcCeeeechhhhcccH
Confidence            35899999999999999999998           45567778787755421  11110   000000000000       


Q ss_pred             -cEEEE-EEeCCCcccHHHHH-----HHHHHHHh----hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE-
Q 027703           88 -VGALV-VYDITRRSSFDSVK-----RWLEELTT----HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME-  155 (220)
Q Consensus        88 -~~~i~-v~d~~~~~~~~~~~-----~~~~~l~~----~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~-  155 (220)
                       +-+.+ --|++..+..+..+     ..+..+..    ...+.-+.++.|.|+.+        ..|++++++|++.++| 
T Consensus       444 ~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRI--------AIARalv~~P~ILLLDE  515 (1228)
T KOG0055|consen  444 RENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRI--------AIARALVRNPKILLLDE  515 (1228)
T ss_pred             HHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHH--------HHHHHHHhCCCEEEecC
Confidence             00000 00122211111111     11111111    11122333555555554        4466999999999999 


Q ss_pred             -eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          156 -TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       156 -~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                       |||+|.++-. +.+.+++....+.|-++++|++..+.. ||+|++|++|+|++.|+++|+.
T Consensus       516 aTSaLD~~se~-~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi  575 (1228)
T KOG0055|consen  516 ATSALDAESER-VVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELI  575 (1228)
T ss_pred             cccccCHHHHH-HHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHH
Confidence             9999999955 455566788888899999999999886 9999999999999999998863

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.67  E-value=2.2e-17  Score=141.91  Aligned_cols=74  Identities=19%  Similarity=0.168  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM  212 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~  212 (220)
                      ..-+++++.++++.++|  ++++|..+...+++.+.++..++.+++++||+++++..+||++++|++|+++..++.
T Consensus       149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~  224 (501)
T PRK11288        149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD  224 (501)
T ss_pred             HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence            34477999999999999  999999999999999998866688999999999999999999999999999877653

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.67  E-value=7.6e-17  Score=120.36  Aligned_cols=146  Identities=24%  Similarity=0.324  Sum_probs=97.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .++|+|+||+|||||++.|.+..           .+..+.+.+++..+.    +.+.  .    ...+ .  ..+.+++.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~----~~~~--~----~~~~-~--~~i~~~~q   83 (178)
T cd03229          28 IVALLGPSGSGKSTLLRCIAGLE-----------EPDSGSILIDGEDLT----DLED--E----LPPL-R--RRIGMVFQ   83 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEEcc----ccch--h----HHHH-h--hcEEEEec
Confidence            58899999999999999999983           234567777764321    0000  0    0011 1  12233332


Q ss_pred             CCCcccHH--HHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHH
Q 027703           96 ITRRSSFD--SVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVV  171 (220)
Q Consensus        96 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l  171 (220)
                      ..  ..+.  .+.+.   +.      .. ++.|.|+        ...-+++++.++++.++|  ++++|..+...+++.+
T Consensus        84 ~~--~~~~~~t~~~~---l~------~~-lS~G~~q--------r~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l  143 (178)
T cd03229          84 DF--ALFPHLTVLEN---IA------LG-LSGGQQQ--------RVALARALAMDPDVLLLDEPTSALDPITRREVRALL  143 (178)
T ss_pred             CC--ccCCCCCHHHh---ee------ec-CCHHHHH--------HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            21  1111  11110   00      00 2223333        344477999999999999  9999999999999999


Q ss_pred             HHHHHH-HhhhhhcCcchhhhccccceeeeeecCC
Q 027703          172 IREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGA  205 (220)
Q Consensus       172 ~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~  205 (220)
                      .++..+ +.+++++||+++++..+||++++|++|+
T Consensus       144 ~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         144 KSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            988877 7899999999999999999999999985

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.67  E-value=5.9e-17  Score=144.31  Aligned_cols=177  Identities=16%  Similarity=0.196  Sum_probs=109.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcch-h-hhhhHHhhc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQER-F-RAVTSAYYR   85 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~~-~-~~~~~~~~~   85 (220)
                      +++|+|++|||||||++.|.+...           +..|.+.++|.++.-        .+--+++... + .....+. .
T Consensus       493 ~iaIvG~sGsGKSTLlklL~gl~~-----------p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi-~  560 (694)
T TIGR03375       493 KVAIIGRIGSGKSTLLKLLLGLYQ-----------PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNI-A  560 (694)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-----------CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHH-h
Confidence            689999999999999999999943           355677777643210        0001111110 0 1111111 0


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHH------HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEE------LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS  157 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S  157 (220)
                             ..+.  ..+.+++.+....      +... +......+.-.-..+.....+...-||++.+++++.++|  ||
T Consensus       561 -------~~~~--~~~~~~i~~a~~~~~l~~~i~~l-p~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts  630 (694)
T TIGR03375       561 -------LGAP--YADDEEILRAAELAGVTEFVRRH-PDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTS  630 (694)
T ss_pred             -------CCCC--CCCHHHHHHHHHHcChHHHHHhC-cccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence                   1110  1223333332222      1111 111111221111223333333344488999999999999  99


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          158 ALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       158 a~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ++|..+...+.+.+.+.. ++.|+++++|+++.+. .||+|++|++|++++.|+++++.
T Consensus       631 ~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl  687 (694)
T TIGR03375       631 AMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVL  687 (694)
T ss_pred             CCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHH
Confidence            999999999999877654 4799999999999864 79999999999999999988763

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=5e-18  Score=135.79  Aligned_cols=75  Identities=13%  Similarity=0.171  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      .-+++++.++++.++|  ++++|..+...+++.+.++.. +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~  268 (286)
T PRK14275        192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL  268 (286)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            3377999999999999  999999999999998887754 57899999999999999999999999999999987664

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.66  E-value=9.6e-18  Score=132.80  Aligned_cols=77  Identities=12%  Similarity=0.054  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeee---------cCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVK---------DGANS  207 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~---------~G~~~  207 (220)
                      ..-+++++.++++.++|  ++++|..+...+++.+.++.. +.+++++||+++.+..+||++++|+         +|+++
T Consensus       160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~  238 (264)
T PRK14243        160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV  238 (264)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence            34478999999999999  999999999999998888765 5899999999999999999999999         89999


Q ss_pred             CCCCCcccc
Q 027703          208 SKGSMMDFS  216 (220)
Q Consensus       208 ~~g~~~~~~  216 (220)
                      ..|+++++.
T Consensus       239 ~~~~~~~~~  247 (264)
T PRK14243        239 EFDRTEKIF  247 (264)
T ss_pred             EeCCHHHHH
Confidence            999987763

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=5.6e-18  Score=133.93  Aligned_cols=77  Identities=10%  Similarity=0.093  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeec-----CCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKD-----GANSSKG  210 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~-----G~~~~~g  210 (220)
                      ..-+++++.++++.++|  ++++|..+...+++.+.++... +.+++++||++.++..+||++++|++     |+++.+|
T Consensus       159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~  238 (261)
T PRK14258        159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG  238 (261)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeC
Confidence            34488999999999999  9999999999999999987654 79999999999999999999999999     9999999


Q ss_pred             CCccc
Q 027703          211 SMMDF  215 (220)
Q Consensus       211 ~~~~~  215 (220)
                      +++++
T Consensus       239 ~~~~~  243 (261)
T PRK14258        239 LTKKI  243 (261)
T ss_pred             CHHHH
Confidence            98775

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=7.5e-18  Score=133.12  Aligned_cols=76  Identities=13%  Similarity=0.193  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeee--------cCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVK--------DGANSS  208 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~--------~G~~~~  208 (220)
                      ..-+++++.++++.++|  ++++|..+..++++.+.++. ++.+++++||+++.+..+||++++|+        +|+++.
T Consensus       158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~  236 (261)
T PRK14263        158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE  236 (261)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE
Confidence            33488999999999999  99999999999999998874 46899999999999999999999996        899999


Q ss_pred             CCCCccc
Q 027703          209 KGSMMDF  215 (220)
Q Consensus       209 ~g~~~~~  215 (220)
                      .|+++++
T Consensus       237 ~g~~~~~  243 (261)
T PRK14263        237 MGPTAQI  243 (261)
T ss_pred             eCCHHHH
Confidence            9998765

>PLN03211 ABC transporter G-25; Provisional

Probab=99.66  E-value=3.4e-18  Score=150.32  Aligned_cols=85  Identities=12%  Similarity=0.037  Sum_probs=74.4

Q ss_pred             CCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchh-hhccccceeeeeecCCCC
Q 027703          131 LDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAY-KAELSVNRVTLVKDGANS  207 (220)
Q Consensus       131 l~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~-~~~~~a~~~~~~~~G~~~  207 (220)
                      +..........+++++.++++.++|  +|++|..+..++.+.+.++..++.++++++|+++ .+..++|++++|++|+++
T Consensus       207 LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv  286 (659)
T PLN03211        207 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL  286 (659)
T ss_pred             cChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence            4444444555688999999999999  9999999999999999988777899999999998 588999999999999999


Q ss_pred             CCCCCccc
Q 027703          208 SKGSMMDF  215 (220)
Q Consensus       208 ~~g~~~~~  215 (220)
                      +.|+++++
T Consensus       287 ~~G~~~~~  294 (659)
T PLN03211        287 FFGKGSDA  294 (659)
T ss_pred             EECCHHHH
Confidence            99998775

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.66  E-value=1.3e-16  Score=114.96  Aligned_cols=115  Identities=22%  Similarity=0.243  Sum_probs=88.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .++|+|+||+|||||++.|.+...+           ..+.+.+++..                          .+.+++.
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~~~~--------------------------~i~~~~~   70 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGELEP-----------DEGIVTWGSTV--------------------------KIGYFEQ   70 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCC-----------CceEEEECCeE--------------------------EEEEEcc
Confidence            4799999999999999999998432           45666665520                          1111111


Q ss_pred             CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~  173 (220)
                                                         ++........-+++++.++++.++|  ++++|..+...+.+.+.+
T Consensus        71 -----------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~  115 (144)
T cd03221          71 -----------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE  115 (144)
T ss_pred             -----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence                                               2222233344467999999999999  999999999999998876


Q ss_pred             HHHHHhhhhhcCcchhhhccccceeeeeecCC
Q 027703          174 EIYSNISRKVLNSDAYKAELSVNRVTLVKDGA  205 (220)
Q Consensus       174 ~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~  205 (220)
                      +   +.+++++||+++++..+||++++|++|+
T Consensus       116 ~---~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221         116 Y---PGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             c---CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            5   4789999999999999999999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=6.8e-18  Score=132.86  Aligned_cols=75  Identities=16%  Similarity=0.181  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      .-+++++.++++.++|  ++++|..+...+.+.+.++. ++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14272        158 CIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL  234 (252)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            3378999999999999  99999999999999888775 468999999999999999999999999999999987764

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.66  E-value=1.4e-17  Score=126.53  Aligned_cols=75  Identities=20%  Similarity=0.170  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhcc-ccceeeeeecCCCCCCCCC
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAEL-SVNRVTLVKDGANSSKGSM  212 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~-~a~~~~~~~~G~~~~~g~~  212 (220)
                      ...-+++++.++++.++|  ++++|..+...+++.+.++..++.+++++||++..+.. +||++++|++|+++..|..
T Consensus       112 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~  189 (200)
T cd03217         112 RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK  189 (200)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence            344477999999999999  99999999999999999876667899999999999887 7999999999999999844

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.66  E-value=2e-17  Score=129.15  Aligned_cols=75  Identities=15%  Similarity=0.280  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|+.+...+.+.|.++. ++.+++++||+++++. +||++++|++|+++..|+++++
T Consensus       148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~  224 (238)
T cd03249         148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDEL  224 (238)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHH
Confidence            33488999999999999  99999999999999998876 6789999999999997 8999999999999999887654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.66  E-value=1.8e-16  Score=123.37  Aligned_cols=76  Identities=18%  Similarity=0.305  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...-+++++.++++.++|  ++++|..+...+.+.|.++. ++.+++++||+++.+.. ||++++|++|+++..|+++++
T Consensus       146 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~  223 (234)
T cd03251         146 RIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEEL  223 (234)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHH
Confidence            344488999999999999  99999999999999998775 47899999999999976 999999999999999987664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=6.1e-18  Score=135.21  Aligned_cols=76  Identities=11%  Similarity=0.145  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceee-eeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVT-LVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~-~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++.. +.+++++||+++++..+||+++ +|++|+++..|.++++
T Consensus       189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~  267 (285)
T PRK14254        189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI  267 (285)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence            33477999999999999  999999999999999888865 4799999999999999999975 6799999999886653

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.66  E-value=4.8e-18  Score=133.55  Aligned_cols=76  Identities=18%  Similarity=0.234  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++. ++.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus       155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  232 (250)
T PRK14240        155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL  232 (250)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            34488999999999999  99999999999999888774 478999999999999999999999999999999987664

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.66  E-value=4e-18  Score=132.98  Aligned_cols=75  Identities=15%  Similarity=0.235  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++. ++.+++++||+++++. .||++++|++|+++..|+++++
T Consensus       147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~  223 (237)
T cd03252         147 IAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDEL  223 (237)
T ss_pred             HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHH
Confidence            34488999999999999  99999999999999998875 4789999999999986 5999999999999999987664

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=1.5e-17  Score=130.89  Aligned_cols=74  Identities=12%  Similarity=0.097  Sum_probs=67.6

Q ss_pred             HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      -+++++.++++.++|  ++++|..+...+.+.+.++.. +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14261        160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI  235 (253)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence            377999999999999  999999999999998887754 58999999999999999999999999999999987664

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.65  E-value=2.6e-18  Score=163.52  Aligned_cols=75  Identities=12%  Similarity=0.235  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..+++++.++++.++|  +|++|+.+...+++.|.++ .++.+++++||+++++..+|||+++|++|++++.|+++++
T Consensus      1071 sLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257      1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred             HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            3377999999999999  9999999999999999887 4588999999999999999999999999999999998765

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=7.4e-18  Score=132.41  Aligned_cols=76  Identities=17%  Similarity=0.144  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.++.. +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  231 (249)
T PRK14253        154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI  231 (249)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            44488999999999999  999999999999998888754 58999999999999999999999999999999987664

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=4e-18  Score=134.08  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++. ++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  235 (251)
T PRK14244        158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI  235 (251)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence            33488999999999999  99999999999999888774 478999999999999999999999999999999987665

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=6.1e-18  Score=134.66  Aligned_cols=75  Identities=21%  Similarity=0.255  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..+++++.++++.++|  ++++|..+...+++.+.++.. +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~  249 (276)
T PRK14271        173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL  249 (276)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            3488999999999999  999999999999998887765 58999999999999999999999999999999987765

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=1.7e-17  Score=130.55  Aligned_cols=76  Identities=17%  Similarity=0.163  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++ .++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14249        156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI  233 (251)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence            33478999999999999  9999999999999988877 4578999999999999999999999999999999988764

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.65  E-value=2.7e-16  Score=123.75  Aligned_cols=77  Identities=14%  Similarity=0.072  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccc-cceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS-VNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~-a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.|.++..++.+++++||+++.+... ||++++|++|+++..|+++..
T Consensus       160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  239 (252)
T CHL00131        160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA  239 (252)
T ss_pred             HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence            44477999999999999  999999999999999998876689999999999999876 899999999999999998643

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=1.1e-17  Score=133.15  Aligned_cols=77  Identities=12%  Similarity=0.120  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeee---------cCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVK---------DGANS  207 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~---------~G~~~  207 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.|.++.. +.++++++|+++.+..+||++++|+         +|+++
T Consensus       170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~  248 (274)
T PRK14265        170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV  248 (274)
T ss_pred             HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence            33488999999999999  999999999999999998854 6899999999999999999999998         89999


Q ss_pred             CCCCCcccc
Q 027703          208 SKGSMMDFS  216 (220)
Q Consensus       208 ~~g~~~~~~  216 (220)
                      ..|+++++.
T Consensus       249 ~~g~~~~~~  257 (274)
T PRK14265        249 EFSPTEQMF  257 (274)
T ss_pred             EeCCHHHHH
Confidence            999988764

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.65  E-value=7.4e-17  Score=122.81  Aligned_cols=163  Identities=14%  Similarity=0.122  Sum_probs=99.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .++|+|+||+|||||++.|.+...+.        .+..+.+.+++..+.    ..   .      .. ..  ..+.+++.
T Consensus        35 ~~~i~G~nGsGKSTLl~~l~G~~~~~--------~~~~G~i~i~g~~~~----~~---~------~~-~~--~~i~~~~q   90 (202)
T cd03233          35 MVLVLGRPGSGCSTLLKALANRTEGN--------VSVEGDIHYNGIPYK----EF---A------EK-YP--GEIIYVSE   90 (202)
T ss_pred             EEEEECCCCCCHHHHHHHhcccCCCC--------CCcceEEEECCEECc----cc---h------hh-hc--ceEEEEec
Confidence            68999999999999999999984310        024566777664321    00   0      00 01  11223332


Q ss_pred             CCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVI  172 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~  172 (220)
                      -........+.+++...... .....        .++..........+++++.++++.++|  ++++|......+++.+.
T Consensus        91 ~~~~~~~~tv~~~l~~~~~~~~~~~~--------~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~  162 (202)
T cd03233          91 EDVHFPTLTVRETLDFALRCKGNEFV--------RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIR  162 (202)
T ss_pred             ccccCCCCcHHHHHhhhhhhccccch--------hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence            11100001122222111000 11111        122222223344477999999999999  99999999999999999


Q ss_pred             HHHHH-Hhhhhh-cCcchhhhccccceeeeeecCCCCCCC
Q 027703          173 REIYS-NISRKV-LNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       173 ~~~~~-~~~~~~-~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ++..+ +.++++ ++|+.+.+..+||++++|++|+++..|
T Consensus       163 ~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         163 TMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             HHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence            88766 556555 456678889999999999999987654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.65  E-value=1.8e-16  Score=141.15  Aligned_cols=177  Identities=15%  Similarity=0.188  Sum_probs=110.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcc-hh-hhhhHHhhc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQE-RF-RAVTSAYYR   85 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~-~~-~~~~~~~~~   85 (220)
                      +++|+|++|+|||||++.|.+..           ++..|.+.++|.++.-        .+.-+++.. -+ .....+. .
T Consensus       485 ~vaivG~sGsGKSTL~~ll~g~~-----------~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi-~  552 (694)
T TIGR01846       485 FIGIVGPSGSGKSTLTKLLQRLY-----------TPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNI-A  552 (694)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC-----------CCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHH-h
Confidence            78999999999999999999994           3356777777754320        000011110 00 0011111 0


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHH-----HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEE-----LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA  158 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa  158 (220)
                             ..+  ...+.+.+.+..+.     +....+......+.-+-..++....+...-++++++++++.++|  ||+
T Consensus       553 -------~~~--~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~  623 (694)
T TIGR01846       553 -------LCN--PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSA  623 (694)
T ss_pred             -------cCC--CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcC
Confidence                   011  11223333332222     11111111222222112233333333444488999999999999  999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          159 LDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      +|..+...+.+.+.+. ..+.|++++||+++.+.. ||++++|++|+++++|+++++
T Consensus       624 LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l  678 (694)
T TIGR01846       624 LDYESEALIMRNMREI-CRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEEL  678 (694)
T ss_pred             CCHHHHHHHHHHHHHH-hCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHH
Confidence            9999999999988776 457899999999999864 999999999999999998775

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=7.5e-17  Score=139.48  Aligned_cols=169  Identities=15%  Similarity=0.175  Sum_probs=106.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE-EEEEEEecC-CcchhhhhhHHhhcCCcEEEEE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE-VKAQIWDTA-GQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~-~~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .++++|+||||||||++.|.|...+           ..|.+.+++.. +.+..-+.. ...........+ ..       
T Consensus       347 ~~~l~G~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~-~~-------  407 (530)
T PRK15064        347 RLAIIGENGVGKTTLLRTLVGELEP-----------DSGTVKWSENANIGYYAQDHAYDFENDLTLFDWM-SQ-------  407 (530)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCceEEEEEcccccccCCCCCcHHHHH-HH-------
Confidence            5799999999999999999998533           34455454421 111110100 000001111111 10       


Q ss_pred             EeCCCcccHHHHHHHHHHHH---hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELT---THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAF  168 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~  168 (220)
                      +.. .......+..++..+.   ......+.-++.|.|+.+        .-+++++.++++.++|  ++++|..+...+.
T Consensus       408 ~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv--------~la~al~~~p~lllLDEPt~~LD~~~~~~l~  478 (530)
T PRK15064        408 WRQ-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRM--------LFGKLMMQKPNVLVMDEPTNHMDMESIESLN  478 (530)
T ss_pred             hcc-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHH--------HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence            000 1112233344444431   111222333444444443        3366999999999999  9999999999999


Q ss_pred             HHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCC-CCCCCccc
Q 027703          169 EVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANS-SKGSMMDF  215 (220)
Q Consensus       169 ~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~-~~g~~~~~  215 (220)
                      +.+.+.   +.+++++|||++++..+||++++|++|+++ ..|++.++
T Consensus       479 ~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~  523 (530)
T PRK15064        479 MALEKY---EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEY  523 (530)
T ss_pred             HHHHHC---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence            988765   458999999999999999999999999997 88887664

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.65  E-value=8.7e-17  Score=125.84  Aligned_cols=66  Identities=14%  Similarity=0.218  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDG  204 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G  204 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|+++
T Consensus       124 v~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~  192 (246)
T cd03237         124 VAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGE  192 (246)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCC
Confidence            34477999999999999  9999999999999999988775 799999999999999999999999654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.65  E-value=1.2e-16  Score=122.14  Aligned_cols=73  Identities=8%  Similarity=0.092  Sum_probs=64.5

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM  212 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~  212 (220)
                      ...-+++++.++++.++|  ++++|......+.+.+.++. ++.+++++||+++.+.. +|++++|++|+++..|++
T Consensus       133 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         133 LLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCCC
Confidence            344488999999999999  99999999999999888874 47899999999999876 999999999999988864

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=2e-17  Score=130.03  Aligned_cols=75  Identities=12%  Similarity=0.162  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      .-+++++.++++.++|  ++++|..+...+.+.|.++. ++.+++++||++.++..+++++++|++|+++.+|+++++
T Consensus       156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14266        156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI  232 (250)
T ss_pred             HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence            3478999999999999  99999999999999888774 478999999999999999999999999999999998765

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.65  E-value=1.1e-17  Score=133.08  Aligned_cols=76  Identities=14%  Similarity=0.143  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++.. +.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus       177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  254 (272)
T PRK14236        177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL  254 (272)
T ss_pred             HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence            34488999999999999  999999999999999998865 68999999999999999999999999999999987654

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=8e-18  Score=132.45  Aligned_cols=76  Identities=12%  Similarity=0.112  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.|.++.. +.+++++||+++.+..+||++++|++|+++..|++.++
T Consensus       157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14255        157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM  234 (252)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            33488999999999999  999999999999999988754 58999999999999999999999999999999987654

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.64  E-value=2.3e-16  Score=138.28  Aligned_cols=77  Identities=10%  Similarity=0.178  Sum_probs=67.2

Q ss_pred             CCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          137 VSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      +...-||++++++++.++|  +|++|..+...+.+.+.+.. .+.|++++||+++... .||+|++|++|++++.|++++
T Consensus       483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~  560 (592)
T PRK10790        483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQ  560 (592)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHH
Confidence            3344488999999999999  99999999999999887654 4689999999998866 599999999999999999877


Q ss_pred             c
Q 027703          215 F  215 (220)
Q Consensus       215 ~  215 (220)
                      +
T Consensus       561 L  561 (592)
T PRK10790        561 L  561 (592)
T ss_pred             H
Confidence            5

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.64  E-value=1.1e-16  Score=123.46  Aligned_cols=70  Identities=16%  Similarity=0.220  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.|.++..+ .+++++||+++.. .+||++++|++|+++..|
T Consensus       149 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         149 VALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLL-DLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHH-HhCCEEEEEeCCeEeecC
Confidence            44488999999999999  9999999999999999887654 8999999999986 699999999999987654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.64  E-value=2.5e-17  Score=118.61  Aligned_cols=180  Identities=18%  Similarity=0.238  Sum_probs=115.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE-EEEEEEecCCcch---hhhhhHHhh-cCCcEEE
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE-VKAQIWDTAGQER---FRAVTSAYY-RGAVGAL   91 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~-~~~~~~d~~g~~~---~~~~~~~~~-~~~~~~i   91 (220)
                      ++|+|++|||||||+++|.+.-.++.           +.+.+.... -...++.....++   .+..|-... +-.|++-
T Consensus        35 LgiVGESGSGKtTLL~~is~rl~p~~-----------G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLR  103 (258)
T COG4107          35 LGIVGESGSGKTTLLKCISGRLTPDA-----------GTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLR  103 (258)
T ss_pred             EEEEecCCCcHHhHHHHHhcccCCCC-----------CeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccce
Confidence            78999999999999999999865543           333331110 0111111111110   011111111 2234433


Q ss_pred             EEEeCC--------------CcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEE
Q 027703           92 VVYDIT--------------RRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFM  154 (220)
Q Consensus        92 ~v~d~~--------------~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~  154 (220)
                      +-+++-              ...-......|+++++...   +..+..++.|.++.+        ..|+.+...|++.|+
T Consensus       104 m~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRL--------QiARnLVt~PrLvfM  175 (258)
T COG4107         104 MQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRL--------QIARNLVTRPRLVFM  175 (258)
T ss_pred             eeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHH--------HHHHHhccCCceEEe
Confidence            322221              1112233456766654321   122333444444443        446699999999999


Q ss_pred             E--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          155 E--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       155 ~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      |  |.++|-.-...+++.+..+..+ +.+++++|||+..+...|+|..+|++|+++++|-.+.+
T Consensus       176 DEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrv  239 (258)
T COG4107         176 DEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRV  239 (258)
T ss_pred             cCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccccc
Confidence            9  9999999999999999999987 89999999999999999999999999999999987665

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.64  E-value=2.1e-16  Score=137.13  Aligned_cols=78  Identities=15%  Similarity=0.174  Sum_probs=68.4

Q ss_pred             CCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          137 VSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      +...-++++.+++++.++|  +|++|..+.+.+.+.+.+...++.++++++|+++.+ ..||++++|++|++++.|++++
T Consensus       461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~  539 (544)
T TIGR01842       461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKILVLQDGRIARFGERDE  539 (544)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEeeCCHHH
Confidence            3344488999999999999  999999999999998887765678999999999975 5799999999999999999876


Q ss_pred             c
Q 027703          215 F  215 (220)
Q Consensus       215 ~  215 (220)
                      +
T Consensus       540 l  540 (544)
T TIGR01842       540 V  540 (544)
T ss_pred             H
Confidence            5

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.64  E-value=1.9e-16  Score=141.21  Aligned_cols=75  Identities=15%  Similarity=0.219  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...-||++.+++++.++|  ||++|..+.+.+.+ .  ....++|+++++|+++.+. .||+|++|++|+++++|+++++
T Consensus       625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~--~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~Gt~~eL  700 (711)
T TIGR00958       625 RIAIARALVRKPRVLILDEATSALDAECEQLLQE-S--RSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQL  700 (711)
T ss_pred             HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h--hccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEeeCHHHH
Confidence            344488999999999999  99999988777777 2  2235789999999999875 5999999999999999998875


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       701 ~  701 (711)
T TIGR00958       701 M  701 (711)
T ss_pred             H
Confidence            3

>PRK10218 GTP-binding protein; Provisional

Probab=99.64  E-value=2.4e-14  Score=124.25  Aligned_cols=160  Identities=18%  Similarity=0.207  Sum_probs=110.7

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhh--CcCCCCC------------cccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFAR--NEFDSNS------------KATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA   78 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~--~~~~~~~------------~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~   78 (220)
                      ...+|+|+|..++|||||+++|+.  ..+...+            +.+.+.........+..+...+.+|||||+..+..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            356899999999999999999997  3333321            12233333344444445568899999999999998


Q ss_pred             hhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC-HHHHHHHHHH-------hC
Q 027703           79 VTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS-TEEGKSLAEE-------EG  150 (220)
Q Consensus        79 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~-~~~~~~~~~~-------~~  150 (220)
                      .+..+++.+|++++|+|+.+....+.. .++..+..   ...|.+++.||.|+..++... .++...+...       .+
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTR-FVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHH-HHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            899999999999999999875444332 23333322   357888999999987543211 2233444322       34


Q ss_pred             CeEEEeccCCCC----------CHHHHHHHHHHHHH
Q 027703          151 LFFMETSALDST----------NVEAAFEVVIREIY  176 (220)
Q Consensus       151 ~~~~~~Sa~~~~----------~v~~l~~~l~~~~~  176 (220)
                      ++++.+||+++.          ++..+++.+.+.+.
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            678899999998          57888887777664

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.64  E-value=3.5e-14  Score=110.45  Aligned_cols=114  Identities=17%  Similarity=0.193  Sum_probs=78.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCC--------------CCC--cccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFD--------------SNS--KATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV   79 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~--------------~~~--~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~   79 (220)
                      +|+++|..|+|||||+++|+...-.              +..  +...+.........+..+..++.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            4899999999999999999764211              000  001111112222223334468899999999988888


Q ss_pred             hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703           80 TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS  133 (220)
Q Consensus        80 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~  133 (220)
                      ....++.+|++++|+|+.+..... ...++..+..   ...|+++++||.|+..
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~---~~~P~iivvNK~D~~~  130 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK---LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH---cCCCEEEEEECccccC
Confidence            888999999999999998865543 3344454433   2578899999999864

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.64  E-value=2.1e-16  Score=138.32  Aligned_cols=78  Identities=13%  Similarity=0.205  Sum_probs=67.7

Q ss_pred             CCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCc
Q 027703          136 DVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMM  213 (220)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~  213 (220)
                      .+...-||++++++++.++|  +|++|+.+...+++.+.+. .++++++++||+++.+. .||++++|++|++++.|+.+
T Consensus       477 ~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~-~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~  554 (588)
T PRK13657        477 RQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDEL-MKGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFD  554 (588)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHH
Confidence            33344588999999999999  9999999999999988765 35799999999998865 69999999999999999977


Q ss_pred             cc
Q 027703          214 DF  215 (220)
Q Consensus       214 ~~  215 (220)
                      ++
T Consensus       555 ~l  556 (588)
T PRK13657        555 EL  556 (588)
T ss_pred             HH
Confidence            65

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.63  E-value=7.4e-15  Score=122.88  Aligned_cols=164  Identities=22%  Similarity=0.202  Sum_probs=100.9

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCC---CCcccceeeeeEEEEEe--------------C------C----eE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDS---NSKATIGVEFQTQVVDI--------------D------G----KE   62 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~---~~~~t~~~~~~~~~i~~--------------~------~----~~   62 (220)
                      .+.+.++|+++|..++|||||+.+|.+.....   +.....+.........+              .      +    ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            45667999999999999999999997642111   11111111111000000              0      0    12


Q ss_pred             EEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CH
Q 027703           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRS-SFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--ST  139 (220)
Q Consensus        63 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~  139 (220)
                      ..+.+||+||+..+......-...+|++++|+|++++. ..+.. +.+..+...  ...|+++++||.|+......  ..
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHLMALDII--GIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHHHHHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence            57889999998877654444556679999999998643 22221 122222221  12367889999998643221  12


Q ss_pred             HHHHHHHHH---hCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          140 EEGKSLAEE---EGLFFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       140 ~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      ++...++..   ...+++.+||+++.|++++++.|.+.+.
T Consensus       162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            233344332   2468899999999999999999887653

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.63  E-value=1.6e-16  Score=138.64  Aligned_cols=76  Identities=14%  Similarity=0.301  Sum_probs=67.4

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ....+|++++++++.++|  ||++|..+...+.+.+.+.. ++.++++++|+++.+. .||++++|++|++++.|+.+++
T Consensus       483 RialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~-~~d~i~~l~~G~i~~~g~~~~l  560 (574)
T PRK11160        483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLE-QFDRICVMDNGQIIEQGTHQEL  560 (574)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHH-hCCEEEEEeCCeEEEeCCHHHH
Confidence            344488999999999999  99999999999999887664 5789999999999976 5999999999999999998775

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.63  E-value=2.4e-16  Score=117.71  Aligned_cols=147  Identities=17%  Similarity=0.241  Sum_probs=97.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .++++|+||+|||||++.|.+...+           ..+.+.+++..+       .   ..    ....+.  .+-+++.
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~-------~---~~----~~~~~~--~i~~~~q   82 (178)
T cd03247          30 KIALLGRSGSGKSTLLQLLTGDLKP-----------QQGEITLDGVPV-------S---DL----EKALSS--LISVLNQ   82 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCC-----------CCCEEEECCEEH-------H---HH----HHHHHh--hEEEEcc
Confidence            5899999999999999999998433           345666666421       1   00    001111  1223332


Q ss_pred             CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~  173 (220)
                      .  +.-+. . .....+               -..+.....+...-+++++.++++.++|  ++++|..+.+.+++.+.+
T Consensus        83 ~--~~~~~-~-tv~~~i---------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~  143 (178)
T cd03247          83 R--PYLFD-T-TLRNNL---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE  143 (178)
T ss_pred             C--Ceeec-c-cHHHhh---------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            1  11110 0 111111               1122222233344577999999999999  999999999999999987


Q ss_pred             HHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          174 EIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       174 ~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      +. ++.+++++||+++++. .||++++|++|+++++|
T Consensus       144 ~~-~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         144 VL-KDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG  178 (178)
T ss_pred             Hc-CCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence            74 4789999999999986 69999999999988764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.63  E-value=1.4e-16  Score=114.33  Aligned_cols=170  Identities=16%  Similarity=0.142  Sum_probs=110.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE----------------EEEEEEecCCcchhhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE----------------VKAQIWDTAGQERFRA   78 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~----------------~~~~~~d~~g~~~~~~   78 (220)
                      =.++|+||+|||||||+-.+.+.+.+.           .+.+.+.+..                +-+.|--.--.+.   
T Consensus        37 e~vaiVG~SGSGKSTLl~vlAGLd~~s-----------sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~---  102 (228)
T COG4181          37 ETVAIVGPSGSGKSTLLAVLAGLDDPS-----------SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN---  102 (228)
T ss_pred             ceEEEEcCCCCcHHhHHHHHhcCCCCC-----------CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecccc---
Confidence            358999999999999999999996554           4444443322                1111100000000   


Q ss_pred             hhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE-
Q 027703           79 VTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME-  155 (220)
Q Consensus        79 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~-  155 (220)
                        ...+.+...-+.+-.-....++....+|+..+.  .+....+..++.|.+        +.+..+++++..|++.|.| 
T Consensus       103 --ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQ--------QRVAiARAfa~~P~vLfADE  172 (228)
T COG4181         103 --LTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQ--------QRVALARAFAGRPDVLFADE  172 (228)
T ss_pred             --chhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHH--------HHHHHHHHhcCCCCEEeccC
Confidence              011111111111111123456767777777643  222222333444433        3455577999999999999 


Q ss_pred             -eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCC
Q 027703          156 -TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSK  209 (220)
Q Consensus       156 -~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~  209 (220)
                       |..+|...-+++.+.+-.+..+ +.|.+++|||...+.+ |+|.+.|++|+++.+
T Consensus       173 PTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~  227 (228)
T COG4181         173 PTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVED  227 (228)
T ss_pred             CCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence             9999999999999999999887 8999999999999886 999999999998764

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.63  E-value=1.4e-17  Score=129.19  Aligned_cols=75  Identities=9%  Similarity=0.251  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++. ++.+++++||++..+. .||++++|++|+++..|+.+++
T Consensus       148 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~~~~~  224 (229)
T cd03254         148 LAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIK-NADKILVLDDGKIIEEGTHDEL  224 (229)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeCCHHHH
Confidence            44488999999999999  99999999999999998874 5889999999999986 5999999999999998886654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.63  E-value=3.1e-16  Score=122.22  Aligned_cols=75  Identities=13%  Similarity=0.220  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+++++.+|++.++|  ++++|..+...+.+.|.++.. +.+++++||+++.+.. ||++++|++|+++..|+++++
T Consensus       146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~  222 (236)
T cd03253         146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEEL  222 (236)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHH
Confidence            33488999999999999  999999999999999988766 8899999999999965 999999999999998887654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.63  E-value=7.9e-15  Score=122.72  Aligned_cols=162  Identities=22%  Similarity=0.187  Sum_probs=102.1

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCC---CCcccceeeeeEEE--------------EEe----CC------eEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDS---NSKATIGVEFQTQV--------------VDI----DG------KEVK   64 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~---~~~~t~~~~~~~~~--------------i~~----~~------~~~~   64 (220)
                      .+.++|+++|..++|||||+++|.+.....   +.....+.......              ++.    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            467999999999999999999997642211   10111111110000              000    00      1357


Q ss_pred             EEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CHHHH
Q 027703           65 AQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--STEEG  142 (220)
Q Consensus        65 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~~~~  142 (220)
                      +.+||+||+..+..........+|++++|+|+++........+.+..+...  ...|+++++||.|+......  ..++.
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            889999999988777777778899999999998643111112222222222  12467889999998642211  12333


Q ss_pred             HHHHHHh---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703          143 KSLAEEE---GLFFMETSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       143 ~~~~~~~---~~~~~~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                      ..+....   +++++.+||+++.|+.+++++|.+.+
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            3444332   56899999999999999999998754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.63  E-value=5.8e-16  Score=135.28  Aligned_cols=75  Identities=16%  Similarity=0.265  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..-+|++++++++.++|  +|++|..+.+.+.+.|.+. .++++++++||+.... ..||++++|++|++++.|+.+++
T Consensus       478 iaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~-~~~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~g~~~~l  554 (571)
T TIGR02203       478 LAIARALLKDAPILILDEATSALDNESERLVQAALERL-MQGRTTLVIAHRLSTI-EKADRIVVMDDGRIVERGTHNEL  554 (571)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH-hCCCEEEEEehhhHHH-HhCCEEEEEeCCEEEeeCCHHHH
Confidence            34488999999999999  9999999999999988765 4579999999999885 56999999999999999998775

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=2.6e-17  Score=130.04  Aligned_cols=76  Identities=14%  Similarity=0.133  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeee-----cCCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVK-----DGANSSKGS  211 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~-----~G~~~~~g~  211 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++.. +.+++++||+++++..+||++++|+     +|+++..|+
T Consensus       159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~  237 (259)
T PRK14260        159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV  237 (259)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence            33488999999999999  999999999999999988754 5899999999999999999999998     599999999


Q ss_pred             Cccc
Q 027703          212 MMDF  215 (220)
Q Consensus       212 ~~~~  215 (220)
                      ++++
T Consensus       238 ~~~~  241 (259)
T PRK14260        238 TTQI  241 (259)
T ss_pred             HHHH
Confidence            8765

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=3.4e-17  Score=129.77  Aligned_cols=76  Identities=14%  Similarity=0.155  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..+...+.+.+.++.. +.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus       170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  247 (265)
T PRK14252        170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI  247 (265)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            44488999999999999  999999999999998887754 68999999999999999999999999999999987654

>PLN03232 ABC transporter C family member; Provisional

Probab=99.62  E-value=4.7e-16  Score=147.59  Aligned_cols=176  Identities=13%  Similarity=0.143  Sum_probs=107.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcch-h-hhhhHHhhc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQER-F-RAVTSAYYR   85 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~~-~-~~~~~~~~~   85 (220)
                      |++|+|++|||||||++.|.+..           ++..|.+.++|.++.-        .+--+|+.+. + .....+   
T Consensus      1264 kvaIVG~SGSGKSTL~~lL~rl~-----------~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~N--- 1329 (1495)
T PLN03232       1264 KVGVVGRTGAGKSSMLNALFRIV-----------ELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN--- 1329 (1495)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC-----------cCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHH---
Confidence            79999999999999999999983           4456778888754320        0000111100 0 000111   


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHH------HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEE------LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS  157 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S  157 (220)
                       .       |..+..+-+++.+.++.      +... +......+.-+-..+.....+....||++++++++.++|  ||
T Consensus      1330 -L-------~~~~~~sdeei~~al~~a~l~~~I~~l-p~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATS 1400 (1495)
T PLN03232       1330 -I-------DPFSEHNDADLWEALERAHIKDVIDRN-PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATA 1400 (1495)
T ss_pred             -c-------CCCCCCCHHHHHHHHHHcCCHHHHHhC-cCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence             0       11111223333222222      1111 111111111111122222223334488999999999999  99


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          158 ALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       158 a~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ++|..+-..+.+.|.+. .++.|+++++|+++.+.. ||+|+||++|++++.|+++++.
T Consensus      1401 aLD~~Te~~Iq~~L~~~-~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232       1401 SVDVRTDSLIQRTIREE-FKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred             cCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence            99999877777666544 457999999999999875 9999999999999999998864

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.62  E-value=1.1e-14  Score=122.84  Aligned_cols=154  Identities=18%  Similarity=0.173  Sum_probs=96.5

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCC-------------------------------CCcccceeeeeEEEEEeC
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDS-------------------------------NSKATIGVEFQTQVVDID   59 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~i~~~   59 (220)
                      ..++++|+++|..++|||||+++|+...-..                               +..+..+.+....  .+.
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~~~   80 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--KFE   80 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--EEe
Confidence            3467999999999999999999998432110                               1122223333333  333


Q ss_pred             CeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHH-HHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC-
Q 027703           60 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDS-VKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV-  137 (220)
Q Consensus        60 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~-  137 (220)
                      .+...+.+|||||+.++..........+|++++|+|+++...+.. ..+++..+...  ...|+++++||.|+...... 
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~  158 (425)
T PRK12317         81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKR  158 (425)
T ss_pred             cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHH
Confidence            345788999999987765544445678999999999987311111 11222222222  22468889999998642211 


Q ss_pred             ---CHHHHHHHHHHhC-----CeEEEeccCCCCCHHHHH
Q 027703          138 ---STEEGKSLAEEEG-----LFFMETSALDSTNVEAAF  168 (220)
Q Consensus       138 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~  168 (220)
                         ..++...++...+     ++++.+||+++.|+.+..
T Consensus       159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence               1233444554443     578999999999998754

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=7.6e-17  Score=141.83  Aligned_cols=72  Identities=21%  Similarity=0.236  Sum_probs=64.3

Q ss_pred             HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCC-CCCCCccc
Q 027703          141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANS-SKGSMMDF  215 (220)
Q Consensus       141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~-~~g~~~~~  215 (220)
                      -+++++.++++.++|  |+.+|..+...+.+.|.++   +.+++++|||++++..+||++++|++|+++ ..|++++.
T Consensus       441 La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  515 (638)
T PRK10636        441 LALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY  515 (638)
T ss_pred             HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence            366999999999999  9999999999999988876   358999999999999999999999999987 78877654

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.62  E-value=2.6e-16  Score=123.70  Aligned_cols=74  Identities=15%  Similarity=0.174  Sum_probs=64.5

Q ss_pred             CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703          138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM  212 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~  212 (220)
                      ...-+++++.++++.++|  ++++|..+...+++.+.++..++.+++++||+++.+..+||++++| +|+++++|-.
T Consensus       147 rv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~~~  222 (255)
T cd03236         147 RVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYGVV  222 (255)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcceee
Confidence            344588999999999999  9999999999999988887766889999999999999999999999 5778876643

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.62  E-value=3.9e-16  Score=120.79  Aligned_cols=74  Identities=18%  Similarity=0.210  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeee-ecCCCCCCCCCc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLV-KDGANSSKGSMM  213 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~-~~G~~~~~g~~~  213 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++..+ +.+++++||+++++. +||++++| +|+..+.+|+.+
T Consensus       146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~~~  223 (225)
T PRK10247        146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEARYE  223 (225)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhhhc
Confidence            33488999999999999  9999999999999999988776 789999999999986 69999999 577788888763

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.62  E-value=1.9e-16  Score=116.01  Aligned_cols=173  Identities=17%  Similarity=0.196  Sum_probs=109.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch-------hhhhhHHhhcCCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-------FRAVTSAYYRGAV   88 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~~~   88 (220)
                      -++++||+|||||||+|.+.|...|           ..+.+.+++..+     .-||.++       -..-|.+...+..
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AGf~~P-----------~~G~i~l~~r~i-----~gPgaergvVFQ~~~LlPWl~~~dNva   96 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAGFVTP-----------SRGSIQLNGRRI-----EGPGAERGVVFQNEALLPWLNVIDNVA   96 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhcCcCc-----------ccceEEECCEec-----cCCCccceeEeccCccchhhHHHHHHH
Confidence            4889999999999999999999444           456666666532     1222211       0111222211111


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCH
Q 027703           89 GALVVYDITRRSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNV  164 (220)
Q Consensus        89 ~~i~v~d~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v  164 (220)
                      ..+-..-+...+..+...+.+..+.  ....+.+.-++.|.++.        ...+++++-+|.+.++|  .+|+|--..
T Consensus        97 fgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQR--------vGiARALa~eP~~LlLDEPfgAlDa~tR  168 (259)
T COG4525          97 FGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQR--------VGIARALAVEPQLLLLDEPFGALDALTR  168 (259)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHH--------HHHHHHhhcCcceEeecCchhhHHHHHH
Confidence            1111112222233333333333322  12222233344444444        45567999999999999  999999999


Q ss_pred             HHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeec--CCCCCCCCC
Q 027703          165 EAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKD--GANSSKGSM  212 (220)
Q Consensus       165 ~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~--G~~~~~g~~  212 (220)
                      +++-+.+..+-.. ++.++++||++++|.-.|+|++||.-  |+|+..-++
T Consensus       169 e~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~  219 (259)
T COG4525         169 EQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL  219 (259)
T ss_pred             HHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence            9999988888766 89999999999999999999999984  556655444

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.62  E-value=2.8e-16  Score=112.44  Aligned_cols=168  Identities=20%  Similarity=0.238  Sum_probs=107.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc------
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV------   88 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~------   88 (220)
                      =.+++.||+|||||||++.+...           +++..+++.+.|+.+.     +.+.+.++.......+..+      
T Consensus        30 e~iaitGPSG~GKStllk~va~L-----------isp~~G~l~f~Ge~vs-----~~~pea~Rq~VsY~~Q~paLfg~tV   93 (223)
T COG4619          30 EFIAITGPSGCGKSTLLKIVASL-----------ISPTSGTLLFEGEDVS-----TLKPEAYRQQVSYCAQTPALFGDTV   93 (223)
T ss_pred             ceEEEeCCCCccHHHHHHHHHhc-----------cCCCCceEEEcCcccc-----ccChHHHHHHHHHHHcCccccccch
Confidence            46899999999999999999999           5556788888887653     4444444443333333332      


Q ss_pred             --EEEEEEeCCCcc-cHHHHHHHHHHHHh---hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCC
Q 027703           89 --GALVVYDITRRS-SFDSVKRWLEELTT---HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALD  160 (220)
Q Consensus        89 --~~i~v~d~~~~~-~~~~~~~~~~~l~~---~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~  160 (220)
                        -++|-+-..+.. .-......+..+..   ...+++.-++.|.|+..        .-++.+.--|++.++|  |||+|
T Consensus        94 eDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~Qri--------AliR~Lq~~P~ILLLDE~TsALD  165 (223)
T COG4619          94 EDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRI--------ALIRNLQFMPKILLLDEITSALD  165 (223)
T ss_pred             hhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHH--------HHHHHhhcCCceEEecCchhhcC
Confidence              122222221111 11111111111110   00122222333333332        2244566667888998  99999


Q ss_pred             CCCHHHHHHHHHHHH-HHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703          161 STNVEAAFEVVIREI-YSNISRKVLNSDAYKAELSVNRVTLVKDGAN  206 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~-~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~  206 (220)
                      ..|-..+-+.|.++. .++..++-+|||.+.+.+.|++++-+-.|++
T Consensus       166 ~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         166 ESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             hhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            999999999999999 5589999999999999999999999999865

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.61  E-value=1.7e-14  Score=110.29  Aligned_cols=147  Identities=21%  Similarity=0.190  Sum_probs=91.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCC-------------------------------CcccceeeeeEEEEEeCCeEEE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSN-------------------------------SKATIGVEFQTQVVDIDGKEVK   64 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~-------------------------------~~~t~~~~~~~~~i~~~~~~~~   64 (220)
                      +|+|+|.+|+|||||+++|+...-...                               ..+..+.+.....+...  ...
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence            589999999999999999976432111                               00222232223333333  357


Q ss_pred             EEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC----HH
Q 027703           65 AQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS----TE  140 (220)
Q Consensus        65 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~----~~  140 (220)
                      +.+|||||+..+.......+..+|++++|+|+++...-... ..+..+...  ...+++++.||.|+.......    ..
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence            78999999987766556667899999999999875432221 222222221  124567789999985422111    12


Q ss_pred             HHHHHHHHhC---CeEEEeccCCCCCHHHH
Q 027703          141 EGKSLAEEEG---LFFMETSALDSTNVEAA  167 (220)
Q Consensus       141 ~~~~~~~~~~---~~~~~~Sa~~~~~v~~l  167 (220)
                      +...+....+   .+++.+||+++.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            3444444444   45889999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.61  E-value=1.5e-16  Score=122.77  Aligned_cols=72  Identities=8%  Similarity=0.085  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM  212 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~  212 (220)
                      ..-+++++.++++.++|  ++++|..+...+.+.+.++.. +.+++++||+++++.. ||++++|++|+++..|++
T Consensus       148 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~  221 (221)
T cd03244         148 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDSP  221 (221)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCCC
Confidence            34488999999999999  999999999999998887754 5889999999999875 999999999999988763

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.61  E-value=2.2e-14  Score=124.49  Aligned_cols=155  Identities=19%  Similarity=0.255  Sum_probs=107.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC--cCCCCC--------------cccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN--EFDSNS--------------KATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV   79 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~--~~~~~~--------------~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~   79 (220)
                      +|+|+|..++|||||+.+|+..  .+....              ...+++......+.+  +...+.+|||||+.+|...
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~--~~~kinlIDTPGh~DF~~e   80 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY--NGTKINIVDTPGHADFGGE   80 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE--CCEEEEEEECCCHHHHHHH
Confidence            6999999999999999999863  232211              122233333333444  3478889999999999888


Q ss_pred             hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC-HHHHHHHHH-------HhCC
Q 027703           80 TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS-TEEGKSLAE-------EEGL  151 (220)
Q Consensus        80 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~-~~~~~~~~~-------~~~~  151 (220)
                      ...+++.+|++++|+|+.+.. ......++..+..   ...|.++++||.|+...+... ..+...+..       ...+
T Consensus        81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence            889999999999999998743 3333455555443   257889999999986533211 223333332       1346


Q ss_pred             eEEEeccCCCC----------CHHHHHHHHHHHHH
Q 027703          152 FFMETSALDST----------NVEAAFEVVIREIY  176 (220)
Q Consensus       152 ~~~~~Sa~~~~----------~v~~l~~~l~~~~~  176 (220)
                      +++.+||+++.          ++..+|+.+.+.+.
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            78899999995          79999998887764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	220
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		3e-62
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		4e-62
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		4e-61
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		5e-61
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		7e-61
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-60
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-60
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		4e-58
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		6e-58
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		7e-58
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		3e-54
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-52
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		4e-49
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-48
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-48
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		4e-48
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-47
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		4e-47
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		6e-47
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-46
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		4e-46
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		4e-46
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-45
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-45
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-45
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		4e-45
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		4e-45
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-44
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-44
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		3e-44
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		6e-44
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		3e-43
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		4e-42
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		4e-42
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-41
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		5e-41
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		1e-40
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-40
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-40
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		5e-40
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		7e-40
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-39
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-39
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-38
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-38
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		6e-38
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		7e-38
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-37
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-37
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-36
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-36
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-36
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-36
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-36
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		3e-36
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		5e-36
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		5e-36
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		5e-36
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		6e-36
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		6e-36
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		6e-36
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		7e-36
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-35
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		4e-35
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		5e-35
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		6e-35
4fmc_F	117	Espg-Rab1 Complex Length = 117		8e-35
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		8e-35
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-34
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-34
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-34
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-34
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		4e-34
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		5e-34
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-33
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		1e-33
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-33
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-33
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-33
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		5e-33
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		6e-33
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		9e-33
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-32
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-32
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-32
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-32
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-31
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-31
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-30
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		5e-30
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		9e-30
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-29
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		7e-29
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		2e-28
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-28
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-27
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-27
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		4e-27
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-26
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		7e-25
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		8e-25
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-23
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		4e-23
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		4e-23
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-22
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-22
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		3e-22
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		3e-22
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-22
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-21
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		3e-21
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-21
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-21
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-21
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		7e-20
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		7e-20
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		8e-20
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		9e-20
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		9e-20
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		9e-20
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		9e-20
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-19
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-19
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-19
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-19
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-19
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-19
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-19
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-19
1byu_A	216	Canine Gdp-Ran Length = 216		2e-19
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-19
3icq_B	171	Karyopherin Nuclear State Length = 171		4e-19
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		4e-19
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		6e-19
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		6e-19
4q21_A	189	Molecular Switch For Signal Transduction: Structura		8e-19
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		8e-19
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-18
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-18
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-18
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		4e-18
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		6e-18
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		8e-18
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-18
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		9e-18
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-17
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-17
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-17
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-17
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-17
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-17
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		1e-17
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-17
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-17
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-17
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-17
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-17
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-17
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		2e-17
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-17
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-17
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		3e-17
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-17
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		3e-17
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-17
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-17
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		4e-17
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		4e-17
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		5e-17
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		6e-17
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		8e-17
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		9e-17
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		9e-17
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		9e-17
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		9e-17
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		9e-17
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		9e-17
1mh1_A	186	Small G-Protein Length = 186		1e-16
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-16
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-16
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-16
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-16
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		1e-16
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-16
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-16
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-16
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-16
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-16
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-16
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-16
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-16
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-16
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-16
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-16
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		3e-16
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-16
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		3e-16
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		3e-16
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		3e-16
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		3e-16
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		3e-16
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-16
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		3e-16
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		4e-16
1s1c_A	183	Crystal Structure Of The Complex Between The Human		5e-16
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		6e-16
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		6e-16
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		6e-16
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		6e-16
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		6e-16
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		6e-16
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		8e-16
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		8e-16
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-15
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-15
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-15
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-15
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-15
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-15
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-15
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-15
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-15
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-15
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-15
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-15
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		3e-15
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		3e-15
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-15
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-15
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		4e-15
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		4e-15
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		4e-15
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		6e-15
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		8e-15
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		8e-15
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		8e-15
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		8e-15
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		9e-15
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-14
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-14
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-14
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-14
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		3e-14
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		5e-14
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		7e-14
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		7e-14
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		8e-14
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-13
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-13
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-13
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-13
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-13
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-13
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-13
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-13
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-13
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-13
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		3e-13
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		3e-13
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-13
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		3e-13
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		3e-13
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		3e-13
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		3e-13
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		3e-13
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		4e-13
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		4e-13
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		5e-13
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-12
2kb0_A	178	Cdc42(T35a) Length = 178		1e-12
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-12
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-12
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-12
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		3e-12
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		3e-12
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		3e-12
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		3e-12
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		4e-12
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		4e-12
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		1e-11
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-11
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-11
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		3e-11
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		3e-11
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		4e-11
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		4e-11
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		5e-11
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-10
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		2e-09
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-06
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-06
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-06
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		3e-06
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		3e-06
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		3e-06
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		3e-06
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		3e-06
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		3e-06
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		6e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		6e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		8e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		1e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		1e-05
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		2e-05
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		2e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		2e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		2e-05
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-05
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		2e-05
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		2e-05
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		2e-05
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		3e-05
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		3e-05
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		4e-05
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		6e-05
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		7e-05
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		1e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		1e-04
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		1e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		1e-04
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		2e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		3e-04
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		3e-04
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		6e-04

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 108/164 (65%), Positives = 136/164 (82%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK+VLIGDS VGKSNLLSRF RNEF+  SK+TIGVEF T+ + +DGK +KAQIWDTAG
Sbjct: 19  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 78
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QER+RA+TSAYYRGAVGAL+VYDI +  ++++V+RWL+EL  H D+ +  MLVGNK DL 
Sbjct: 79  QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 138
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
            +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY
Sbjct: 139 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  234 bits (596), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 108/164 (65%), Positives = 136/164 (82%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK+VLIGDS VGKSNLLSRF RNEF+  SK+TIGVEF T+ + +DGK +KAQIWDTAG
Sbjct: 28  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 87
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QER+RA+TSAYYRGAVGAL+VYDI +  ++++V+RWL+EL  H D+ +  MLVGNK DL 
Sbjct: 88  QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
            +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  230 bits (587), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 107/164 (65%), Positives = 135/164 (82%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK+VLIGDS VGKSNLLSRF RNEF+  SK+TIGVEF T+ + +DGK +KAQIWDTAG
Sbjct: 28  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 87
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
            ER+RA+TSAYYRGAVGAL+VYDI +  ++++V+RWL+EL  H D+ +  MLVGNK DL 
Sbjct: 88  LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
            +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  230 bits (586), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 107/164 (65%), Positives = 135/164 (82%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK+VLIGDS VGKSNLLSRF RNEF+  SK+TIGVEF T+ + +DGK +KAQIWDTAG
Sbjct: 7   YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 66
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
            ER+RA+TSAYYRGAVGAL+VYDI +  ++++V+RWL+EL  H D+ +  MLVGNK DL 
Sbjct: 67  LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
            +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY
Sbjct: 127 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  229 bits (585), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 111/186 (59%), Positives = 142/186 (76%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK+VLIGDS VGKSNLLSRF RNEF+  SK+TIGVEF T+ + +DGK +KAQIWDTAG
Sbjct: 4   YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 63
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QER+R +TSAYYRGAVGAL+VYDI +  ++++V+RWL+EL  H D+ +  MLVGNK DL 
Sbjct: 64  QERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
            +R V T+E ++ AE+  L F+ETSALDSTNVE AF+ ++ EIY  +S+K +   A   E
Sbjct: 124 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDE 183
Query: 193 LSVNRV 198
              N V
Sbjct: 184 SPGNNV 189

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  228 bits (580), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 106/164 (64%), Positives = 134/164 (81%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK+VLIGDS VGKSNLLSRF RNEF+  SK+TIGVEF T+ + +DGK +KAQIWDTAG
Sbjct: 4   YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 63
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
            ER+RA+TSAYYRGAVGAL+VYDI +  ++++V+RWL+EL  H D+ +   LVGNK DL 
Sbjct: 64  LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
            +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY
Sbjct: 124 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  227 bits (579), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 106/164 (64%), Positives = 134/164 (81%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK+VLIGDS VGKSNLLSRF RNEF+  SK+TIGVEF T+ + +DGK +KAQIWDTAG
Sbjct: 10  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 69
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
            ER+RA+TSAYYRGAVGAL+VYDI +  ++++V+RWL+EL  H D+ +   LVGNK DL 
Sbjct: 70  LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLR 129
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
            +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY
Sbjct: 130 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  220 bits (561), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 133/172 (77%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           LFKIVLIGDS VGKSNLLSRF +NEF+ +SK+TIGVEF T+ ++I+GK +KAQIWDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
           ER+RA+TSAYYRGAVGAL+VYDI++ SS+++   WL EL  + D  V   L+GNK DL  
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLN 185
           +R V TEE K+ A+E  L F ETSAL+S NV+ AFE +I  IY  +S+  ++
Sbjct: 133 LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMD 184

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  219 bits (559), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 132/170 (77%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           ++FK+VLIG+S VGK+NLLSRF RNEF  +S+ TIGVEF T+ V +    VKAQIWDTAG
Sbjct: 9   FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 68
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
            ER+RA+TSAYYRGAVGAL+V+D+T+  ++  V+RWL+EL  H +  +  MLVGNK DL 
Sbjct: 69  LERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 128
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
             R+V TEE +  AE  GL F+ETSALDSTNVE AFE V++EI++ +S++
Sbjct: 129 QAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  219 bits (559), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 132/170 (77%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           ++FK+VLIG+S VGK+NLLSRF RNEF  +S+ TIGVEF T+ V +    VKAQIWDTAG
Sbjct: 24  FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 83
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
            ER+RA+TSAYYRGAVGAL+V+D+T+  ++  V+RWL+EL  H +  +  MLVGNK DL 
Sbjct: 84  LERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
             R+V TEE +  AE  GL F+ETSALDSTNVE AFE V++EI++ +S++
Sbjct: 144 QAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  207 bits (528), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 100/171 (58%), Positives = 137/171 (80%), Gaps = 2/171 (1%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI-DGKEVKAQIWDTA 71
           YLFKIVLIGDS VGKSNLLSRF R+EF+  SK+TIGVEF T+ + + + K +KAQIWDTA
Sbjct: 6   YLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTA 65
Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQER+RA+TSAYYRGAVGAL+VYDIT+++SF+++++WL+EL  + D+ +  +LVGNK DL
Sbjct: 66  GQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDL 125
Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
             +R ++  +    A++E L F+ETSAL++TNVE AF  ++ EIY N+ +K
Sbjct: 126 KHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIY-NVRQK 175

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 127/170 (74%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFKIVLIGDS VGKSNLLSRF  +EF+  SK+TIGVEF T+ ++++ K++KAQIWDTAG
Sbjct: 9   YLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAG 68
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
            ER+RA+TSAYYRGAVGAL+VYDI++ SS+++   WL EL  + D  V   L+GNK DL 
Sbjct: 69  LERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLA 128
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
            +R V T+E K+ A E  + F ETSAL+S NV+ AF  +I  I+  +S+ 
Sbjct: 129 HLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKH 178

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  190 bits (483), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/172 (53%), Positives = 119/172 (69%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK ++IGD+ VGKS LL +F    F      TIGVEF  ++V+IDGK++K QIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QE FR++T +YYRGA GAL+VYDITRR +F+ +  WLE+   H  + +  ML+GNK DL+
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 184
           S RDV  EEG++ A E GL FMETSA  + NVE AF    +EIY  I + + 
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 191

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 129/180 (71%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIG+S VGKS LL RF+ + + ++  +TIGV+F+ + V++DGK VK QIWDTAG
Sbjct: 7   YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +TS+YYRG+ G ++VYD+T + SF+ VK WL+E+  +  + V ++LVGNKCDL 
Sbjct: 67  QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
             R V  +  K  A+   + F+ETSALDSTNVE AF  + R+I  ++S++ LN    K E
Sbjct: 127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKE 186

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 129/180 (71%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIG+S VGKS LL RF+ + + ++  +TIGV+F+ + V++DGK VK QIWDTAG
Sbjct: 7   YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +TS+YYRG+ G ++VYD+T + SF+ VK WL+E+  +  + V ++LVGNKCDL 
Sbjct: 67  QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
             R V  +  K  A+   + F+ETSALDSTNVE AF  + R+I  ++S++ LN    K E
Sbjct: 127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKE 186

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 89/164 (54%), Positives = 117/164 (71%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK ++IGD+ VGKS LL +F    F      TIGVEF  +++ IDGK++K QIWDTAG
Sbjct: 9   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QE FR++T +YYRGA GAL+VYDITRR +F+ +  WLE+   H ++ +  ML+GNK DL+
Sbjct: 69  QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
           S R+V  EEG++ A E GL FMETSA  ++NVE AF    +EIY
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 124/170 (72%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIGDS VGK+ +L RF+ + F+S   +TIG++F+ + +++DGK +K QIWDTAG
Sbjct: 5   YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +T+AYYRGA+G ++VYDIT   SFD+++ W+  +  H    V +M++GNKCD++
Sbjct: 65  QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
             R VS E G+ LA + G+ FMETSA  + NVE AF  + R+I + + +K
Sbjct: 125 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 123/169 (72%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIGDS VGK+ +L RF+ + F+S   +TIG++F+ + +++DGK +K QIWDTAG
Sbjct: 7   YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 66
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +T+AYYRGA+G ++VYDIT   SFD+++ W+  +  H    V +M++GNKCD++
Sbjct: 67  QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISR 181
             R VS E G+ LA + G+ FMETSA  + NVE AF  + R+I + + +
Sbjct: 127 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  183 bits (465), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 87/163 (53%), Positives = 122/163 (74%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIGDS VGKS LL RFA + +  +  +TIGV+F+ + + ++ K VK QIWDTAG
Sbjct: 8   YLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAG 67
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +TS+YYRGA G ++VYD+T R SFD+VK+W++E+  +    V ++LVGNKCDL 
Sbjct: 68  QERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLV 127
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           S R V+++EG+ LA+  G+ F+ETSA ++ NVE AF  +  EI
Sbjct: 128 SKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 116/166 (69%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           Y+FK ++IGD  VGKS LL +F   +F ++   TIGVEF T+++++ G+++K QIWDTAG
Sbjct: 14  YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFRAVT +YYRGA GAL+VYDITRRS+++ +  WL +     +     +L+GNK DL+
Sbjct: 74  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           + RDV+ EE K  AEE GL F+E SA    NVE AF    ++IY N
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/163 (52%), Positives = 120/163 (73%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIG+S VGKS LL RF+ + + ++  +TIGV+F+ + V++DGK VK QIWDTAG
Sbjct: 20  YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 79
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +TS+YYRG+ G ++VYD+T + SF+ VK WL+E+  +  + V ++LVGNKCDL 
Sbjct: 80  QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 139
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             R V  +  K  A+   + F+ETSALDSTNVE AF  + R+I
Sbjct: 140 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  180 bits (457), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 116/168 (69%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           Y+FK ++IGD  VGKS LL +F   +F ++   TIGVEF T+++++ G+++K QIWDTAG
Sbjct: 29  YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 88
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           Q RFRAVT +YYRGA GAL+VYDITRRS+++ +  WL +     +     +L+GNK DL+
Sbjct: 89  QGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 148
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
           + RDV+ EE K  AEE GL F+E SA    NVE AF    ++IY NI 
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ 196

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/163 (51%), Positives = 119/163 (73%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIGDS VGKS LL RFA + +  +  +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 15  YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+  +    V ++LVGNKCDL 
Sbjct: 75  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           + + V     K  A+  G+ F+ETSA ++TNVE +F  +  EI
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/163 (51%), Positives = 119/163 (73%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIGDS VGKS LL RFA + +  +  +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 5   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+  +    V ++LVGNKCDL 
Sbjct: 65  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           + + V     K  A+  G+ F+ETSA ++TNVE +F  +  EI
Sbjct: 125 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/163 (51%), Positives = 119/163 (73%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIGDS VGKS LL RFA + +  +  +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 24  YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 83
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+  +    V ++LVGNKCDL 
Sbjct: 84  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           + + V     K  A+  G+ F+ETSA ++TNVE +F  +  EI
Sbjct: 144 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 83/163 (50%), Positives = 119/163 (73%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIGDS VGK+ LL RFA + +  +  +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 15  YLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+  +    V ++LVGNKCDL 
Sbjct: 75  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           + + V     K  A+  G+ F+ETSA ++TNVE +F  +  EI
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/163 (51%), Positives = 118/163 (72%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIGDS VGKS LL RFA + +  +  +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 32  YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 91
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+  +    V ++LVGNKCDL 
Sbjct: 92  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           + + V     K  A+  G+ F+ETSA ++TNVE +F     EI
Sbjct: 152 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/162 (51%), Positives = 118/162 (72%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           LFK++LIGDS VGKS LL RFA + +  +  +TIGV+F+ + +++DGK +K QIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
           ERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+  +    V ++LVGNKCDL +
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 125
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            + V     K  A+  G+ F+ETSA ++TNVE +F  +  EI
Sbjct: 126 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 121/172 (70%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIGDS VGKS LL RFA + +  +  +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 8   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +TS+YYRGA G +VVYD+T + S+ +VK+WL+E+  +    V ++LVGNK DL 
Sbjct: 68  QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 184
           + + V     K  A+  G+ F+ETSA ++TNVE AF  +  EI   +  +VL
Sbjct: 128 TKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLEVL 179

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  174 bits (442), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/163 (50%), Positives = 118/163 (72%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIGDS VGKS LL RFA + +  +  +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 7   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 66
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+  +    V ++LVG KCDL 
Sbjct: 67  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLT 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           + + V     K  A+  G+ F+ETSA ++TNVE +F  +  EI
Sbjct: 127 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  173 bits (439), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 83/163 (50%), Positives = 117/163 (71%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK++LIGDS VGKS LL RFA + +  +  +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 8   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +TS+YYRGA G +VVYD+T + S+ +VK+WL+E+  +    V ++LVGNK DL 
Sbjct: 68  QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           + + V     K  A+  G+ F+ETSA ++TNVE AF  +  EI
Sbjct: 128 TKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 116/160 (72%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K++LIGDS VGKS LL RFA + +  +  +TIGV+F+ + +++DGK +K QIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR 135
           FR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+  +    V ++LVGNKCDL + +
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 136 DVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            V     K  A+  G+ F+ETSA ++TNVE +F  +  EI
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 114/175 (65%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           +LFK ++IG +  GKS LL +F  N+F  +S  TIGVEF ++VV++ GK VK QIWDTAG
Sbjct: 24  FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAG 83
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR+VT +YYRGA GAL+VYDIT R +++S+  WL +  T     +  +L GNK DLD
Sbjct: 84  QERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 187
             R+V+  E    A+E  L F+ETSAL   NVE AF    R I + I    L+ +
Sbjct: 144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPE 198

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 87/174 (50%), Positives = 119/174 (68%), Gaps = 5/174 (2%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           +LFK+++IGDS VGKS+LL RFA N F  +   TIGV+F+ + V+I+G++VK QIWDTAG
Sbjct: 8   HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +TS YYRG  G +VVYD+T   SF +VKRWL E+  +CD  V R+LVGNK D  
Sbjct: 68  QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD-VCRILVGNKNDDP 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF----EVVIREIYSNISRK 182
             + V TE+    A + G+   ETSA ++ NVE  F    E+V+R    N++++
Sbjct: 127 ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 116/164 (70%), Gaps = 1/164 (0%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           +LFK+VL+GD++VGK+ ++ RF    F     +TIGV+F  + ++I GK VK QIWDTAG
Sbjct: 28  FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAG 87
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR +T +YYR A GA++ YDIT+RSSF SV  W+E++  +  + + ++L+GNK DL 
Sbjct: 88  QERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 133 SIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 175
            +R+VS  E +SLAE  + L  +ETSA DS+NVE AF  V  E+
Sbjct: 148 ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  163 bits (413), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           + KI+LIGDS VGKS LL RF  ++F+ +   TIG++F+ + VDI+GK+VK QIWDTAGQ
Sbjct: 3   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
           ERFR +T+AYYRGA+G ++VYDIT   +F ++K+W + +  H +     +LVGNK D+++
Sbjct: 63  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
            R V+ ++G++LA+E G+ F+E+SA +  NV   F  + + I   I
Sbjct: 123 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/175 (46%), Positives = 115/175 (65%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           +LFK ++IG++  GKS LL +F   +F  +S  TIGVEF ++++++ GK VK QIWDTAG
Sbjct: 9   FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 68
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR+VT +YYRGA GAL+VYDIT R +++++  WL +        +  +L GNK DLD
Sbjct: 69  QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 187
           + R+V+  E    A+E  L F+ETSAL   NVE AF    R+I + I    L+ +
Sbjct: 129 ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPE 183

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           + KI+LIGDS VGKS LL RF  ++F+ +   TIG++F+ + VDI+GK+VK Q+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
           ERFR +T+AYYRGA+G ++VYD+T   +F ++K+W + +  H +     +LVGNK D+++
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 126
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
            R V+ ++G++LA+E G+ F+E+SA +  NV   F  + + I   I
Sbjct: 127 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           + KI+LIGDS VGKS LL RF  ++F+ +   TIG++F+ + VDI+GK+VK Q+WDTAGQ
Sbjct: 20  IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
           ERFR +T+AYYRGA+G ++VYD+T   +F ++K+W + +  H +     +LVGNK D+++
Sbjct: 80  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
            R V+ ++G++LA+E G+ F+E+SA +  NV   F  + + I   I
Sbjct: 140 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  160 bits (405), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 115/164 (70%), Gaps = 1/164 (0%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KI+LIGDS VGKS LL RF  ++F+ +   TIG++F+ + VDI+GK+VK QIWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR 135
           FR +T+AYYRGA G ++VYDIT   +F ++K+W + +  H +     +LVGNK D ++ R
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXET-R 123
Query: 136 DVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
            V+ ++G++LA+E G+ F+E+SA +  NV   F  + + I   I
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  160 bits (404), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 78/162 (48%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNS-KATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           FK++L+GDS VGK+ LL RF    F + +  +T+G++F+ +V+D+DG +VK Q+WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
           ERFR+VT AYYR A   L++YD+T ++SFD+++ WL E+  +    V  ML+GNK D   
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V  E+G+ LA+E GL FMETSA    NV+ AF  + +E+
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 115/164 (70%), Gaps = 1/164 (0%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KI+LIGDS VGKS LL RF  ++F+ +   TIG++F+ + VDI+GK+VK Q+WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR 135
           FR +T+AYYRGA G ++VYD+T   +F ++K+W + +  H +     +LVGNK D ++ R
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXET-R 123
Query: 136 DVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
            V+ ++G++LA+E G+ F+E+SA +  NV   F  + + I   I
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 110/163 (67%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           +LFK ++IG++  GKS LL +F   +F  +S  TIGVEF ++++++ GK VK QIWDTAG
Sbjct: 10  FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 69
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR+VT +YYRGA GAL+VYDIT R +++++  WL +        +  +L GNK DLD
Sbjct: 70  QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 129
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           + R+V+  E    A+E  L F+ETSAL   +VE AF    R+I
Sbjct: 130 ADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 112/160 (70%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           Y+FKI++IG+S+VGK++ L R+A + F     +T+G++F+ + +  + K +K QIWDTAG
Sbjct: 4   YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QER+R +T+AYYRGA+G +++YDIT   SF++V+ W  ++ T+       +LVGNKCD++
Sbjct: 64  QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 123
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172
             R VS+E G+ LA+  G  F E SA D+ NV+  FE ++
Sbjct: 124 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/163 (47%), Positives = 109/163 (66%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           +LFK ++IG++  GKS LL +F   +F  +S  TIGVEF ++++++ GK VK QIWDTAG
Sbjct: 7   FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 66
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
            ERFR+VT +YYRGA GAL+VYDIT R +++++  WL +        +  +L GNK DLD
Sbjct: 67  LERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           + R+V+  E    A+E  L F+ETSAL   +VE AF    R+I
Sbjct: 127 ADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 115/168 (68%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           Y+FK+++IG+S+VGK++ L R+A + F     +T+G++F+ + V    K VK QIWDTAG
Sbjct: 22  YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG 81
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QER+R +T+AYYRGA+G +++YDIT   SF++V+ W  ++ T+       +LVGNKCD++
Sbjct: 82  QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
             R V TE+G+ LAE+ G  F E SA ++ +V  AFE ++  I   +S
Sbjct: 142 EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  153 bits (386), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 104/156 (66%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           +LFKIVLIG++ VGK+ L+ RF +  F     ATIGV+F  + V+I+G++VK QIWDTAG
Sbjct: 25  FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 84
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFR++T +YYR A   ++ YDIT   SF  +  WL E+  +    V  +LVGNK DL 
Sbjct: 85  QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168
             R+VS +  +  +E + ++++ETSA +S NVE  F
Sbjct: 145 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 108/176 (61%), Gaps = 8/176 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K+ L+GD+ VGKS+++ RF ++ FD N   TIG  F T+ V    +  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RF ++   YYRG+  A++VYDIT++ SF ++K+W++EL  H    +   + GNKCDL  I
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYK 190
           R+V  ++ K  AE  G   +ETSA ++ N+E        E++  ISR++   D ++
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIE--------ELFQGISRQIPPLDPHE 191

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 110/160 (68%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           Y+FK++LIG+S+VGK++ L R+A + F     +T+G++F+ + V    K +K QIWDTAG
Sbjct: 21  YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAG 80
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QER+R +T+AYYRGA+G L++YDI  + SF +V+ W  ++ T+       +LVGNKCDL+
Sbjct: 81  QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172
             R V  E+G+ LA++ G  F E SA ++ NV+  FE ++
Sbjct: 141 DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 102/164 (62%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F    ++TIG  F TQ V +D   VK +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+ ++   YYRGA  A+VVYDIT   SF   K W++EL       +   L GNK DL + 
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           R V  +E +S A++  L FMETSA  S NV   F  + +++  N
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 102/164 (62%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F    ++TIG  F TQ V +D   VK +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+ ++   YYRGA  A+VVYDIT   SF   K W++EL       +   L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           R V  +E +S A++  L FMETSA  S NV   F  + +++  N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 110/168 (65%), Gaps = 8/168 (4%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+VL+GD   GKS+L+ RF +++F    ++TIG  F +Q + ++   VK +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR 135
           + ++   YYRGA  A++V+D+T ++SF+  K+W++EL    +  +   L GNK DL   R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 136 DVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 183
            V+ E+ ++ A+E GLFFMETSA  +TNV        +EI+  I+R++
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNV--------KEIFYEIARRL 173

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/162 (46%), Positives = 104/162 (64%), Gaps = 2/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            KI++IG+S VGKS+LL RF  + FD    ATIGV+F+ + + +DG + K  IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
           RFR +T +YYRGA G ++VYD+TRR +F  +  WL EL T+C    +   LVGNK D ++
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN 135
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R+V   EG   A +    F+E SA     V+ AFE ++ +I
Sbjct: 136 -REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 112/176 (63%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           Y FKI++IG+S+VGK++ L R+A + F     +T+G++F+ + +  + K +K QIWDTAG
Sbjct: 7   YXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 66
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
            ER+R +T+AYYRGA G ++ YDIT   SF++V+ W  ++ T+       +LVGNKCD +
Sbjct: 67  LERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXE 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 188
             R VS+E G+ LA+  G  F E SA D+ NV+  FE ++  I    S  +  +D 
Sbjct: 127 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTADP 182

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 101/164 (61%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+G+S VGKS+L+ RF + +F    ++TIG  F TQ V +D   VK +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+ ++   YYRGA  A+VVYDIT   SF   K W++EL       +   L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           R V  +E +S A++  L FMETSA  S NV   F  + +++  N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 101/164 (61%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+G+S VGKS+L+ RF + +F    ++TIG  F TQ V +D   VK +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+ ++   YYRGA  A+VVYDIT   SF   K W++EL       +   L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           R V  +E +S A++  L FMETSA  S NV   F  + +++  N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 101/164 (61%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+G+S VGKS+L+ RF + +F    ++TIG  F TQ V +D   VK +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+ ++   YYRGA  A+VVYDIT   SF   K W++EL       +   L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           R V  +E +S A++  L FMETSA  S NV   F  + +++  N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 103/161 (63%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F    ++TIG  F TQ V +D   VK +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+ ++   YYRGA  A+VVYDIT + +F   K W++EL      ++   L GNK DL + 
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R V  EE ++ A++  L FMETSA  + NV   F  + +++
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 101/164 (61%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F    ++TIG  F TQ V +D   VK +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+ ++   YYRGA  A+VVYDIT   SF   K W++EL       +   L GNK DL + 
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           R V  +E +S A++  L F ETSA  S NV   F  + +++  N
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 101/164 (61%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+G+S VGKS+L+ RF + +F    ++TIG  F TQ V +D   VK +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+ ++   YYRGA  A+VVYDIT   SF   K W++EL       +   L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           R V  +E +S A++  L FMETSA  S NV   F  + +++  N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 101/164 (61%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+G+S VGKS+L+ RF + +F    ++TIG  F TQ V +D   VK +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+ ++   YYRGA  A+VVYDIT   SF   K W++EL       +   L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           R V  +E +S A++  L FMETSA  S NV   F  + +++  N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  146 bits (369), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 101/161 (62%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F    ++TIG  F TQ V +D   VK +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+ ++   YYRGA  A+VVYDIT   +F   K W++EL       +   L GNK DL S 
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R V  +E ++ A++  L FMETSA  + NV   F  + +++
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 100/161 (62%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F    ++TIG  F TQ V +D   VK +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+ ++   YYRGA  A+VVYDIT   SF   K W++EL       +   L GNK DL + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R V  +E +S A++  L FMETSA  S NV   F  + +++
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 98/163 (60%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K+ L+GD+ VGKS+++ RF  + FD N   TIG  F T+ V    +  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFRA+   YYRG+  A++VYDIT+  +F ++K W+ EL  H   ++   + GNKCDL  +
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177
           R+V   + K  A+     F+ETSA ++ N+   F  + R I S
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 168

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 100/161 (62%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F    ++TI   F TQ V +D   VK +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+ ++   YYRGA  A+VVYDIT   +F   K W++EL       +   L GNK DL S 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R V  +E ++ A++  L FMETSA  + NV   F  + +++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 100/161 (62%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F    ++TIG  F TQ V +D   VK +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           R+ ++   YYRGA  A+VVYDIT   +F   K W++EL       +   L GNK DL S 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R V  +E ++ A++  L FMETSA  + NV   F  + +++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  143 bits (360), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 90/115 (78%)
Query: 17  IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF 76
           ++LIGDS VGKS LL RFA + +  +  +TIGV+F+ + +++DGK +K QIWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 77  RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           R +TS+YYRGA G +VVYD+T + SF++VK+WL+E+  +    V ++LVGNKCDL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  143 bits (360), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 97/156 (62%), Gaps = 3/156 (1%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+VL+G++AVGKS+++ RF  N+F  N + TIG  F TQ V I+   VK +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL---D 132
           F ++   YYR A  ALVVYD+T+  SF   + W++EL       +   LVGNK D     
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168
             R V+ EEG+ LAEE+GL F ETSA    NV   F
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 105/170 (61%), Gaps = 5/170 (2%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           +FKI++IGDS VGK+ L  RF    F   ++ATIGV+F+ + VDIDG+ +K Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 74  ERFR-AVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDL 131
           ERFR ++   YYR     + VYD+T  +SF S+  W+EE   H     + R+LVGNKCDL
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSAL---DSTNVEAAFEVVIREIYSN 178
            S   V T+  +  A+   +   ETSA    D+ +VEA F  +  ++ S+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 113/168 (67%), Gaps = 1/168 (0%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           +  ++++IG   VGK++L+ RF  + F    K+T+GV+F+ + V++ GK+++ QIWDTAG
Sbjct: 25  FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 84
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERF ++TSAYYR A G ++VYDIT++ +FD + +W++ +  +       +LVGNK D +
Sbjct: 85  QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144
Query: 133 SIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
           + R+++ ++G+  A++  G+ F E SA D+ NV+  F  ++ +I   +
Sbjct: 145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 107/157 (68%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L++RF  + FD+  +ATIG++F ++ + ++ + V+ Q+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFR++  +Y R +  A+VVYDIT  +SF    +W++++ T   + V  MLVGNK DL   
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
           R VSTEEG+  A+E  + F+ETSA    NV+  F  V
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 97/163 (59%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K+ L+GD+ VGKS+++ RF  + FD N   TIG  F T+ V    +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFRA+   YYRG+  A++VYDIT+  +F ++K W+ EL  H   ++   + GNKCDL  +
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177
           R+V   + K  A+     F+ETSA ++ N+   F  + R I S
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 103/170 (60%), Gaps = 5/170 (2%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           +FKI++IGDS VGK+ L  RF    F   ++ATIGV+F+ + VDIDG+ +K Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 74  ERFR-AVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDL 131
           ERFR ++   YYR     + VYD T  +SF S+  W+EE   H     + R+LVGNKCDL
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSAL---DSTNVEAAFEVVIREIYSN 178
            S   V T+  +  A+       ETSA    D+ +VEA F  +  ++ S+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKSH 198

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 108/167 (64%), Gaps = 6/167 (3%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           LFKI+L+GD  VGKS+L++R+  N+FDS    TIGVEF  + +++DG  V  QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
           ERFR++ + +YRG+   L+ + +    SF ++  W +E   + D     +   +++GNK 
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 130 DLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREI 175
           D+   R VSTEE ++  ++ G + + ETSA DSTNV AAFE  +R I
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 103/155 (66%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V +G+ AVGK+++++RF  + FD+N ++TIG++F ++ + +D   V+ Q+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFR++  +Y R +  A+VVYDIT R SF++  +W++++       V   LVGNK DL  +
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169
           R V+ EEG   A+E    F ETSA    N++  F+
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFK 156

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 106/157 (67%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L++RF  + FD+  +ATIG++F ++ + ++ + ++ Q+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFR++  +Y R +  A+VVYDIT  +SF    +W++++ T   + V  MLVGNK DL   
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
           R VS EEG+  A+E  + F+ETSA    NV+  F  V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 106/157 (67%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L++RF  + FD+  +ATIG++F ++ + ++ + V+ Q+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFR++  +Y R +  A+VVYDIT  +SF    +W++++ T   + V  MLVGNK DL   
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
           R VS EEG+  A+E  + F+ETSA    NV+  F  V
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 106/157 (67%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L++RF  + FD+  +ATIG++F ++ + ++ + V+ Q+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFR++  +Y R +  A+VVYDIT  +SF    +W++++ T   + V  MLVGNK DL   
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
           R ++ EEG+  A+E  + F+ETSA    NV+  F  V
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  137 bits (346), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 103/170 (60%), Gaps = 12/170 (7%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +KIVL GD+AVGKS+ L R  +NEF  N  AT+GV+FQ + + +DG+    Q+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFR++  +Y+R A G L++YD+T   SF +++ W++ +       V  MLVGNK D   I
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKAD---I 145
Query: 135 RDVSTEEGK---------SLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           RD +  EG+          LA   G  F ETSA D +N+  A   + RE+
Sbjct: 146 RDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  137 bits (344), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 108/167 (64%), Gaps = 6/167 (3%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           LFK++L+GD  VGKS+L++R+  N+FD+    TIGVEF  + +++DG  V  QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
           ERFR++ + +YRG+   L+ + +    SF ++  W +E   + D     +   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 130 DLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREI 175
           D+ S R VSTEE ++   + G + + ETSA D+TNV AAFE  +R +
Sbjct: 129 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 108/167 (64%), Gaps = 6/167 (3%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           LFK++L+GD  VGKS+L++R+  N+FD+    TIGVEF  + +++DG  V  QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
           ERFR++ + +YRG+   L+ + +    SF ++  W +E   + D     +   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 130 DLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREI 175
           D+ S R VSTEE ++   + G + + ETSA D+TNV AAFE  +R +
Sbjct: 127 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 109/167 (65%), Gaps = 6/167 (3%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++L+GD  VGKS+L++R+  N+FDS +  TIGVEF  + +++DG+ V  QIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
           ERF+++ + +YRGA   L+ + +  R SF+++  W +E   + D         +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 130 DLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREI 175
           D +  R V+TEE ++   E G + ++ETSA D TNV  AFE  +R++
Sbjct: 127 DKED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 105/157 (66%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L++RF  + FD+  +ATIG++F ++ + ++ + ++ Q+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFR++  +Y R +  A+VVYDIT  +SF    +W++++ T   + V  MLVGNK DL   
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
           R VS EEG+  A+E  + F+ETSA    NV+  F  V
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 105/157 (66%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L++RF  + FD+  +ATIG++F ++ + ++ + V+ Q+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFR++  +Y R +  A+VVYDIT  +SF    +W++++ T   + V  MLVGNK DL   
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
           R VS EEG+  A+E  + F+ETSA    NV+  F  V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 94/156 (60%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           Y FK+VL+G+  VGK++L+ R+  N+F+     T+G  F T+ ++I GK V   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERF A+   YYR + GA++VYDIT   SF  VK W++EL       +   +VGNK DL+
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168
             R VS +E +S AE  G     TSA  +  +E  F
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 105/157 (66%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L++RF  + FD+  +ATIG++F ++ + ++ + V+ Q+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFR++  +Y R +  A+VVYDIT  +SF    +W++++ T   + V  MLVGNK DL   
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
           R VS EEG+  A+E  + F+ETSA    NV+  F  V
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 93/156 (59%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           Y FK+VL+G+  VGK++L+ R+  N+F+     T+   F T+ ++I GK V   IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERF A+   YYR + GA++VYDIT   SF  VK W++EL       +   +VGNK DL+
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168
             R VS +E +S AE  G     TSA  +  +E  F
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 93/156 (59%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           Y FK+VL+G+  VGK++L+ R+  N+F+     T+   F T+ ++I GK V   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERF A+   YYR + GA++VYDIT   SF  VK W++EL       +   +VGNK DL+
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168
             R VS +E +S AE  G     TSA  +  +E  F
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 108/172 (62%), Gaps = 13/172 (7%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK----------E 62
           YL K++ +GDS VGK+  L R+  N+F+     T+G++F+ + V  + +          +
Sbjct: 24  YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK 83
Query: 63  VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAV 120
           V  Q+WDTAGQERFR++T+A++R A+G L+++D+T + SF +V+ W+ +L    +C+   
Sbjct: 84  VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP- 142
Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172
             +L+GNK DL   R+V+  + + LA++ G+ + ETSA    NVE A E ++
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 110/182 (60%), Gaps = 11/182 (6%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID----------GKE 62
           YL K + +GDS VGK+++L ++   +F+S    T+G++F+ + V             G+ 
Sbjct: 10  YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQR 69
Query: 63  VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR 122
           +  Q+WDTAG ERFR++T+A++R A+G L+++D+T   SF +V+ W+ +L  H  +    
Sbjct: 70  IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD 129
Query: 123 M-LVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISR 181
           + L GNK DL+  R V  EE + LAE+ G+ + ETSA + TN+  A E+++  I   + R
Sbjct: 130 IVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMER 189
Query: 182 KV 183
            V
Sbjct: 190 SV 191

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  126 bits (317), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 111/183 (60%), Gaps = 13/183 (7%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQ--VVDIDGKE-------- 62
           YL K++ +GDS VGK+  L R+  N+F+     T+G++F+ +  V D  G +        
Sbjct: 10  YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 63  VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAV 120
           V  Q+WDTAG ERFR++T+A++R A+G L+++D+T + SF +V+ W+ +L    +C+   
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP- 128
Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
             +L+GNK DL   R+V+  + + LAE+ G+ + ETSA    NVE + E ++  I   + 
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 181 RKV 183
           + V
Sbjct: 189 KCV 191

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 111/183 (60%), Gaps = 13/183 (7%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQ--VVDIDGKE-------- 62
           YL K++ +GDS VGK+  L R+  N+F+     T+G++F+ +  V D  G +        
Sbjct: 10  YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 63  VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAV 120
           V  Q+WDTAG ERFR++T+A++R A+G L+++D+T + SF +V+ W+ +L    +C+   
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP- 128
Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
             +L+GNK DL   R+V+  + + LAE+ G+ + ETSA    NVE + E ++  I   + 
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 181 RKV 183
           + V
Sbjct: 189 KCV 191

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  123 bits (309), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 107/167 (64%), Gaps = 7/167 (4%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA-QIWDTAG 72
           + K++++GDS VGK++L+ R+  +++    KATIG +F T+ V +DG +V   Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNK 128
           QERF+++  A+YRGA   ++VYD+T  SSF+++K W +E   H +         +++GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 129 CDL-DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIR 173
            D  +S + VS +  + LA+  G +    TSA ++ NV+ AFE + R
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 104/172 (60%), Gaps = 13/172 (7%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQ--VVDIDGKE-------- 62
           YL K++ +GDS VGK+  L R+  N+F+     T+G++F+ +  V D  G +        
Sbjct: 10  YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 63  VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAV 120
           V  Q+WDTAG ERFR++T+A++R A G L+ +D+T + SF +V+ W  +L    +C+   
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP- 128
Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172
             +L+GNK DL   R+V+  + + LAE+ G+ + ETSA    NVE + E ++
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 104/172 (60%), Gaps = 13/172 (7%)
Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQ--VVDIDGKE-------- 62
           YL K++ +GDS VGK+  L R+  N+F+     T+G++F+ +  V D  G +        
Sbjct: 10  YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 63  VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAV 120
           V  Q+WDTAG ERFR++T+A++R A G L+ +D+T + SF +V+ W  +L    +C+   
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP- 128
Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172
             +L+GNK DL   R+V+  + + LAE+ G+ + ETSA    NVE + E ++
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 105/165 (63%), Gaps = 6/165 (3%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++++GDS VGK++L++++   +F +  KATIG +F T+ V +D + V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
           ERF+++  A+YRGA   ++V+D+T  ++F ++  W +E               +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLDSIRDVSTEEGKSLA-EEEGLFFMETSALDSTNVEAAFEVVIR 173
           DL++ R V+T+  ++    +  + + ETSA ++ NVE AF+ + R
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 105/165 (63%), Gaps = 6/165 (3%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++++GDS VGK++L++++   +F +  KATIG +F T+ V +D + V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
           ERF+++  A+YRGA   ++V+D+T  ++F ++  W +E               +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLDSIRDVSTEEGKSLA-EEEGLFFMETSALDSTNVEAAFEVVIR 173
           DL++ R V+T+  ++    +  + + ETSA ++ NVE AF+ + R
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 104/165 (63%), Gaps = 6/165 (3%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++++GDS VGK++L++++   +F +  KATIG +F T+ V +D + V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
           ERF+++  A+YRGA   ++V+D+T  ++F ++  W +E               +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLDSIRDVSTEEGKSLA-EEEGLFFMETSALDSTNVEAAFEVVIR 173
           D ++ R V+T+  ++    +  + + ETSA ++ NVE AF+ + R
Sbjct: 128 DFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 104/165 (63%), Gaps = 6/165 (3%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++++GDS VGK++L++++   +F +  KATIG +F T+ V +D + V  QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
           ERF+++  A+YRGA   ++V+D+T  ++F ++  W +E               +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLDSIRDVSTEEGKSLA-EEEGLFFMETSALDSTNVEAAFEVVIR 173
           DL++ R V+T+  ++    +  + + ETSA ++ NVE AF+ + R
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 40/202 (19%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK------------- 61
           +K VL+G+S+VGKS+++ R  ++ F  N+  TIG  F T VV+++               
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 62  ------------------------EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDIT 97
                                    +K  IWDTAGQER+ ++   YYRGA  A+VV+DI+
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 98  RRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETS 157
             ++ D  K W+ +L    +  +  +LV NK D +  + V   E +  A++  L F++TS
Sbjct: 128 NSNTLDRAKTWVNQLKISSNYII--ILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQTS 184
Query: 158 ALDSTNVEAAFEVVIREIYSNI 179
           A   TN++  F ++  EIY NI
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNI 206

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K+V++G+ AVGKS+++ R+ +  F  + K TIGV+F  + + ++ ++V+  +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
            F A+T AYYRGA   ++V+  T R SF+++  W E++       +   LV NK DL   
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLDD 124
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169
             +  EE + LA+   L F  TS  +  NV   F+
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++++G   VGKS L  +F  +EF  + + T    ++ +VV +DG+EV+  I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLD 132
           E + A+   Y+R   G L V+ IT   SF +   + E+ L    D  V  +LVGNK DL+
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             R VS EE K+ AE+  + ++ETSA    NV+  F  ++REI
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++++G   VGKS L  +F  +EF  + + T    ++ +VV +DG+EV+  I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLD 132
           E + A+   Y+R   G L V+ IT   SF +   + E+ L    D  V  +LVGNK DL+
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             R VS EE K+ AE+  + ++ETSA    NV+  F  ++REI
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++++G   VGKS L  +F  +EF  + + T    ++ +VV +DG+EV+  I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLD 132
           E + A+   Y+R   G L V+ IT   SF +   + E+ L    D  V  +LVGNK DL+
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             R VS EE K+ AE+  + ++ETSA    NV+  F  ++REI
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++++G   VGKS L  +F  +EF  + + T    ++ +VV +DG+EV+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLD 132
           E + A+   Y+R   G L V+ IT   SF +   + E+ L    D  V  +LVGNK DL+
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             R VS EE K+ A++  + ++ETSA    NV+  F  ++REI
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ +  + E++    D+  V  +LVGNKCDL S
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V T++ + LA   G+ F+ETSA     V+ AF  ++REI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++++G   VGKS L  +F  +EF  + + T    ++ +VV +DG+EV+  I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDL 131
           E + A+   Y+R   G L+V+ IT   SF +   + E++      +  +  ++VGNK DL
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +  R V  EE +S AEE G+ ++ETSA    NV+  F  ++REI
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++++G   VGKS L  +F  +EF  + + T    ++ +VV +DG+EV+  I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDL 131
           E + A+   Y+R   G L+V+ IT   SF +   + E++      +  +  ++VGNK DL
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +  R V  EE +S AEE G+ ++ETSA    NV+  F  ++REI
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 94/163 (57%), Gaps = 2/163 (1%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++++G   VGKS L  +F  +EF  + + T    ++ +VV +DG+EV+  I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLD 132
           E + A+   Y+R   G L V+ IT   SF +   + E+ L    D  V  +LVGNK DL+
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             R VS EE K+ AE+  + ++ETSA    NV+  F  ++REI
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ +  + E++    D+  V  +LVGNK DL S
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V T++ + LA   G+ F+ETSA     V+ AF  ++REI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI   ++ QV ++D ++   +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
           +F A+   Y +   G  +VY IT +S+F+ ++   E++    DT  V  +LVGNKCDL+ 
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 134 IRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 175
            R V  E+G++LA +     F+E+SA    NV   F  ++R+I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    AT+GVE    V   +   +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D+   
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD- 121
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R V   + KS+    ++ L + + SA  + N E  F  + R++
Sbjct: 122 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    AT+GVE    V   +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD- 128
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R V   + KS+    ++ L + + SA  + N E  F  + R++
Sbjct: 129 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    AT+GVE    V   +   +K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D   I
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 131
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +D    + KS+    ++ L + + SA  + N E  F  + R++
Sbjct: 132 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    AT+GVE    V   +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D   I
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 126
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +D    + KS+    ++ L + + SA  + N E  F  + R++
Sbjct: 127 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    AT+GVE    V   +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D   I
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 126
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +D    + KS+    ++ L + + SA  + N E  F  + R++
Sbjct: 127 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI   ++ QV ++D ++   +I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTE 64
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
           +F A+   Y +   G  +VY IT +S+F+ ++   E++    DT  V  +LVGNKCDL+ 
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 134 IRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 175
            R V  E+G++LA +     F+E+SA    NV   F  ++R+I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    AT+GVE    V   +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D   I
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 126
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +D    + KS+    ++ L + + SA  + N E  F  + R++
Sbjct: 127 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+V++G   VGK++L  +F   EF      T+   + +++V +   E    + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTT-HCDTAVGRMLVGNKCDLDSI 134
           +  +  ++  G  G ++VY +T   SF  ++   ++L   H  T V  +LVGNK DL   
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R+V   EGK LAE  G  FME+SA ++   +  F  VI+EI
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI   ++ QV ++D ++   +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
           +F A+   Y +   G  +VY IT +S+F+ ++   E++    DT  V  +LVGNKCDL+ 
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 134 IRDVSTEEGKSLAEEE-GLFFMETSALDSTNVEAAFEVVIREI 175
            R V  E+G++LA +     F+E+SA    NV   F  ++R+I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    AT+GVE    V   +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++ +D+T R ++ +V  W  +L   C+  +  +L GNK D   I
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 126
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +D    + KS+    ++ L + + SA  + N E  F  + R++
Sbjct: 127 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+     T+GVE    V   +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD- 128
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R V   + KS+    ++ L + + SA  + N E  F  + R++
Sbjct: 129 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI   ++ QV ++D ++   +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
           +F A+   Y +   G  +VY IT +S+F+ ++   E++    DT  V  +LVGNKCDL+ 
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 134 IRDVSTEEGKSLAEEE-GLFFMETSALDSTNVEAAFEVVIREI 175
            R V  E+G++LA +     F+E+SA    NV   F  ++R+I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    AT+GVE    V   +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           ++  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D   I
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 126
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +D    + KS+    ++ L + + SA  + N E  F  + R++
Sbjct: 127 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 3/174 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    ATIGVE        +  E+K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D+   
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVKE- 130
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 188
           R V  +   +   ++ L + + SA  + N E  F  + R++  N   + + S A
Sbjct: 131 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPA 183

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+     T+GVE    V   +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D   I
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 126
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +D    + KS+    ++ L + + SA  + N E  F  + R++
Sbjct: 127 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 4/165 (2%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK-EVKAQIWDTAGQ 73
            KIV++GD A GK++L + FA+  F    K TIG++F  + + + G   V  QIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRW---LEELTTHCDTAVGRMLVGNKCD 130
                +   Y  GA G L+VYDIT   SF++++ W   +++++   +T     LVGNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 131 LDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           L+ +R +  E+     +E G      SA    +V   F+ V  EI
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    ATIGVE        +  E+K  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D+   
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVKE- 122
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           R V  +   +   ++ L + + SA  + N E  F  + R++  N
Sbjct: 123 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGN 165

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    ATIGVE        +  E+K  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D+   
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVKE- 123
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           R V  +   +   ++ L + + SA  + N E  F  + R++  N
Sbjct: 124 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGN 166

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    AT+GVE    V   +   +K  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D+   
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD- 124
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R V   + KS+    ++ L + + SA  + N E  F  + R++
Sbjct: 125 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    AT+GVE    V   +   +K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D+   
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD- 130
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R V   + KS+    ++ L + + SA  + N E  F  + R++
Sbjct: 131 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 187
            R V + + + LA   G+ ++ETSA     VE AF  ++REI  +  RK+   D
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPD 175

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    AT+GVE    V   +   +K  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D   I
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 126
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +D    + KS+    ++ L + + SA  + N E  F  + R++
Sbjct: 127 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    E +    AT+GVE    V   +   +K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+  +  +L GNK D   I
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 131
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +D    + KS+    ++ L + + SA  + N E  F  + R++
Sbjct: 132 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 183
            R V + + + LA   G+ ++ETSA     VE AF  ++REI  +  RK+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 183
            R V + + + LA   G+ ++ETSA     VE AF  ++REI  +  RK+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHE 80
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ +  + E++    D+  V  +LVGNKCDL S
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V T++ + LA   G+ F+ETSA     V+ AF  ++REI
Sbjct: 141 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 80
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF  +  + E++    D+  V  +LVGNKCDL +
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V T++   LA+  G+ F+ETSA     VE AF  ++REI
Sbjct: 141 -RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 1/155 (0%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIG-VEFQTQVVDIDGKEVKAQIWDTAGQ 73
           +KI LIGD  VGK+  ++R     F+ N  AT+G V      +D  G  +K  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
           E+   +   YY GA GA++ +D+T R +  ++ RW++E           ++  NK D+ +
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168
            + +S +    + + +   + E SA  + N    F
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 14/172 (8%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
             K V +GD AVGK+ +L  +  N F ++   T+   F   VV +DG  V   +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
           E +  +    YRGA   L+ + +  ++S++++ K+WL EL  H    +  +LVG K DL 
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPEL-KHYAPGIPIVLVGTKLDLR 123
Query: 132 ---DSIRD------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIR 173
                ++D      ++T +G+ L +  G + ++E S+    NV+A F+  IR
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIR 175

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 67
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 67
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 27  KSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +F ++ F ++   TI   +  Q V ID +  +  I DTAGQE F A+   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 87  AVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSL 145
             G L+V+ +T R SF+ + ++  ++    D      +L+GNK DLD  R V+ EEG+ L
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 146 AEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           A +  + +ME SA    NV+ AF  ++R I
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 11  YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 69
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 70  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 128
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 129 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGEICLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ +  + E++    D+  V  +LVGNK DL S
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V T++ + LA   G+ F+ETSA     V+ AF  ++REI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ +  + E++    D+  V  +LVGNK DL S
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V T++ + LA   G+ F+ETSA     V+ AF  ++REI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGK+ L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGN+CDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
             K V +GD AVGK+ +L  +  N F ++   T+   F   VV +DG  V   +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
           E +  +    YRGA   ++ + +  ++S+++V K+W+ EL  H    V  +LVG K DL 
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLR 123
Query: 132 ---------DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
                         ++T +G+ L +  G   ++E S+    NV+A F+  I+ +
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVV 177

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      +I   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      +I   ++ QVV IDG+     I DTAGQE
Sbjct: 10  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQE 68
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 69  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 127
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 128 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTGGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTTGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
            R V + + + LA   G+ ++ETSA     VE AF  ++RE
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGKE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 2/160 (1%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KI ++G  +VGKS+L  +F   +F  ++  TI   F T+++ ++G+E   Q+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSI 134
           +      Y     G ++VY +T   SF+ +K    +L        +  MLVGNK DL   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
           R +S EEGK+LAE     F+E+SA ++      F  +I E
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
              A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KI ++G  +VGKS+L  +F   +F  +   TI   F T+++ ++G+E   Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSI 134
           +      Y     G ++VY +T   SF+ +K    +L        +  MLVGNK DL   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
           R +S EEGK+LAE     F+E+SA ++      F  +I E
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 18/183 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y     +L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +    
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SRK 182
             K
Sbjct: 181 PVK 183

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 18/183 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y     +L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +    
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SRK 182
             K
Sbjct: 181 PVK 183

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 6/168 (3%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            KIV++GD AVGK+ LL  F++ E  +    T+   F + V+    +E    +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
            +  +    Y  +   L+ + +  R+SFD++  +W  E+  + DTA   +LVG K DL  
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA-KTVLVGLKVDLRK 141
Query: 132 DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSN 178
           D   DV+ +EG  L ++ G + ++E S++    +   FE  +  I+SN
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 18/183 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y     +L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 124
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +    
Sbjct: 125 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 184
Query: 180 SRK 182
             K
Sbjct: 185 PVK 187

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 20/170 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVD--IDGKEVKAQIWDTAGQ 73
           K+VL+GD   GK++LL  FA   F  +   T+   F+  +V+  + GK V   IWDTAGQ
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV---FERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
           + +  +   +Y  A   L+ +D+T  +SFD++  RW  E+   C   V  ++VG K DL 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLR 151
Query: 132 -----------DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFE 169
                      + +  V+   G+ +A   G + ++E SA    NV A F+
Sbjct: 152 KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQ 201

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KI ++G  +VGKS+L  +F   +F  +   TI   F T+++ ++G+E   Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSI 134
           +      Y     G ++VY +T   SF+ +K    +L        +  MLVGNK DL   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
           R +S EEGK+LAE     F+E+SA ++      F  +I E
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 91/176 (51%), Gaps = 18/176 (10%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y     +L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 122
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLE 67
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGGE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 6/168 (3%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            KIV++GD AVGK+ LL  F++ E  +    T+   F + V+    +E    +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
            +  +    Y  +   L+ + +  R+SFD++  +W  E+  + DTA   +LVG K DL  
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA-KTVLVGLKVDLRK 140
Query: 132 DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSN 178
           D   DV+ +EG  L ++ G + ++E S++    +   FE  +  I+SN
Sbjct: 141 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 188

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KI ++G  +VGKS+L  +F   +F  +   TI   F T+++ ++G+E   Q+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSI 134
           +      Y     G ++VY +T   SF+ +K    +L        +  MLVGNK DL   
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
           R +S EEGK+LAE     F+E+SA ++      F  +I E
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGVE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETXLLDILDTAGGE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGIE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCDL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 18/178 (10%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYS 177
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR + S
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLS 178

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNK DL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 18/183 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +    
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SRK 182
             K
Sbjct: 181 PVK 183

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 18/183 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +    
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SRK 182
             K
Sbjct: 181 PVK 183

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
             K V +GD AVGK+ +L  +  N+F ++   T+   F   V  +DG+ V   +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-VDGQIVNLGLWDTAGQ 67
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
           E +  +    YRGA   ++ + +  ++S+++V K+W+ EL       V  +LVG K DL 
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLR 126
Query: 132 -------DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
                  D    +++ +G+ L ++ G   ++E S+    NV+A F+  I+ +     RK
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCD-TAVGRMLVGNKCDL- 131
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC  T +  +LVG K DL 
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 121
Query: 132 ------DSIRD-----VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
                 + +RD     ++  +G ++A E G + ++E SAL    ++  F+  IR +
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 16/174 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      L+ + +   +SF++V+ +W  E+  HC      +LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDD 122
Query: 132 ----DSIRD-----VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
               + +RD     ++  +G ++A E G + ++E SAL    ++  F+  IR +
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K VL+GD AVGK++L+  +  N + +    T    F + VV +DG+ V+ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDE 80
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCD---- 130
           F  +    Y      L+ + +   SSF +V ++W+ E+  HC  A   +LVG + D    
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-PIILVGTQSDLRED 139
Query: 131 ------LDSIRD--VSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                 LD  ++  V  E  K LAEE +   ++E SAL   N++  F+  I
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCD-TAVGRMLVGNKCDL- 131
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC  T +  +LVG K DL 
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 121
Query: 132 ------DSIRD-----VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
                 + +RD     ++  +G ++A E G + ++E SAL    ++  F+  IR +
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 14/174 (8%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
             K V +GD AVGK+ LL  +  N F ++   T+   F   VV ++G  V   +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
           E +  +    YRGA   ++ + +  ++S+++V K+W+ EL  H    V  +LVG K DL 
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLR 125
Query: 132 ---------DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
                         ++T +G+ L +  G   ++E S+    NV+  F+  IR +
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 147
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 81
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 139
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 140 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 195

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 127
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 128 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 18/175 (10%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 73
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLDS 133
           +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL  
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLRD 131
Query: 134 IRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
            +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 186

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL  F++++F      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 65
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + I    S +++  +W  E+   C   V  +LVGNK DL 
Sbjct: 66  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 124
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
           +               V  EEG+ +A   G F +ME SA     V   FE+  R
Sbjct: 125 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL  F++++F      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 64
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + I    S +++ ++W  E+   C   V  +LVGNK DL 
Sbjct: 65  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 123
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
           +               V  EEG+ +A   G F +ME SA     V   FE+  R
Sbjct: 124 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL  F++++F      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 67
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + I    S +++  +W  E+   C   V  +LVGNK DL 
Sbjct: 68  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 126
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
           +               V  EEG+ +A   G F +ME SA     V   FE+  R
Sbjct: 127 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL  F++++F      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 65
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + I    S +++  +W  E+   C   V  +LVGNK DL 
Sbjct: 66  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 124
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
           +               V  EEG+ +A   G F +ME SA     V   FE+  R
Sbjct: 125 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL  F++++F      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + I    S +++  +W  E+   C   V  +LVGNK DL 
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 122
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
           +               V  EEG+ +A   G F +ME SA     V   FE+  R
Sbjct: 123 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 84/164 (51%), Gaps = 8/164 (4%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+ + G + VGKS L+ RF    F      T+   ++ Q   ID + V  +I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSV---KRWLEELTTHCDTAVGRMLVGNKCDLD 132
                  + R   G ++VYDIT R SF+ V   K  L+E+    +  +  +LVGNK DLD
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL--ILVGNKADLD 145
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFEVVIREI 175
             R VSTEEG+ LA E    F E SA     N+   F  + RE+
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL  F++++F      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 66
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + I    S +++ ++W  E+   C   V  +LVGNK DL 
Sbjct: 67  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 125
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
           +               V  EEG+ +A   G F +ME SA     V   FE+  R
Sbjct: 126 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL  F++++F      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 65
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + I    S +++ ++W  E+   C   V  +LVGNK DL 
Sbjct: 66  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 124
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
           +               V  EEG+ +A   G F +ME SA     V   FE+  R
Sbjct: 125 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL  F++++F      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 64
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + I    S +++ ++W  E+   C   V  +LVGNK DL 
Sbjct: 65  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 123
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
           +               V  EEG+ +A   G F +ME SA     V   FE+  R
Sbjct: 124 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 9/160 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +++ + G   VGKS+L+ RF +  F  +   T+   ++ QV+  D      QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-----AVGRMLVGNKC 129
           +F A+           ++VY IT R S + +K   E++   C+      ++  MLVGNKC
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQI---CEIKGDVESIPIMLVGNKC 119
Query: 130 DLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169
           D    R+V + E ++LA      FMETSA  + NV+  F+
Sbjct: 120 DESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 18/176 (10%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N        T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 147
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNK DL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNK DL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +    
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SRK 182
             K
Sbjct: 181 PVK 183

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +    
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SRK 182
             K
Sbjct: 181 PVK 183

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 20/164 (12%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KIV++GDS  GK+ LL  FA++ F  N   T+  E  T   +ID + ++  +WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +  V    Y  +   L+ +DI+R  + DSV K+W  E+   C      +LVG K DL + 
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRT- 141
Query: 135 RDVST--------------EEGKSLAEEEG-LFFMETSALDSTN 163
            DVST              ++G ++A++ G   ++E SAL S N
Sbjct: 142 -DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 18/176 (10%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 65
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 123
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 124 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 179

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDS 133
            +  +    Y      L+ + +   +S+++V+ +W  E+  HC  +   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 121
Query: 134 IRD------------VSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 175
            +D            ++  +G +LA+E + + ++E SAL    ++  F+  IR +
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 20/164 (12%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KIV++GDS  GK+ LL  FA++ F  N   T+  E  T   +ID + ++  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +  V    Y  +   L+ +DI+R  + DSV K+W  E+   C      +LVG K DL + 
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRT- 125
Query: 135 RDVST--------------EEGKSLAEEEG-LFFMETSALDSTN 163
            DVST              ++G ++A++ G   ++E SAL S N
Sbjct: 126 -DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 20/164 (12%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KIV++GDS  GK+ LL  FA++ F  N   T+  E  T   +ID + ++  +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +  V    Y  +   L+ +DI+R  + DSV K+W  E+   C      +LVG K DL + 
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRT- 146
Query: 135 RDVST--------------EEGKSLAEEEG-LFFMETSALDSTN 163
            DVST              ++G ++A++ G   ++E SAL S N
Sbjct: 147 -DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 18/176 (10%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 89
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC +T +  +LVG K DL 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 147
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
             +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 37/195 (18%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 75  RFRAVTSAYYRGAVGALVVYDITRR-------------------SSFDSVK-RWLEELTT 114
            +  +    Y   VG     DIT R                   +SF++V+ +W  E+  
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 115 HC-DTAVGRMLVGNKCDLDSIRD------------VSTEEGKSLAEEEG-LFFMETSALD 160
           HC +T +  +LVG K DL   +D            ++  +G ++A+E G + ++E SAL 
Sbjct: 125 HCPNTPI--ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 182
Query: 161 STNVEAAFEVVIREI 175
              ++  F+  IR +
Sbjct: 183 QRGLKTVFDEAIRAV 197

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 18/177 (10%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDL 131
           E +  +    Y      L+ + +   +SF  V+ +W  E+  HC +T +  +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI--ILVGTKLDL 271
Query: 132 DSIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
              +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 18/177 (10%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDL 131
           E +  +    Y      L+ + +   +SF  V+ +W  E+  HC +T +  +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI--ILVGTKLDL 271
Query: 132 DSIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
              +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 18/177 (10%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K V++GD AVGK+ LL  +  N F      T+   +   V+ +DGK V   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDL 131
           E +  +    Y      L+ + +   +SF  V+ +W  E+  HC +T +  +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI--ILVGTKLDL 271
Query: 132 DSIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
              +D            ++  +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL  F++++F +    T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL- 131
           E +       Y      L+ + I    S +++  +W  E+   C   V  +LVGNK DL 
Sbjct: 64  EDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 122
Query: 132 ---DSIRD--------VSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
               + R+        V   EG+ +A   G F +ME SA     V   FE+  R
Sbjct: 123 NDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +D K V   +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDS 133
            +  +    Y      L+ + +   +S+++V+ +W  E+  HC  +   +LVG K DL  
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 127
Query: 134 IRD------------VSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 175
            +D            ++  +G +LA+E + + ++E SAL    ++  F+  IR +
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+   +   V+ +D K V   +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDS 133
            +  +    Y      L+ + +   +S+++V+ +W  E+  HC  +   +LVG K DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 128
Query: 134 IRD------------VSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 175
            +D            ++  +G +LA+E + + ++E SAL    ++  F+  IR +
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 27  KSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +F ++ F S+   TI   + T++  +DG   +  I DTAGQE F A+   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 87  AVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSL 145
             G L+V+ I  R SF+ V +   ++    D      +LVGNK DL+S R V   E  + 
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 146 AEEEGLFFMETSALDSTNVEAAFEVVIREI 175
                + + E SA    NV+ AFE ++R +
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL   ++++F      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 61
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + I    S +++ ++W  E+   C   V  +LVGNK DL 
Sbjct: 62  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 120
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
           +               V  EEG+ +A   G F +ME SA     V   FE+  R
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL   ++++F      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + I    S +++ ++W  E+   C   V  +LVGNK DL 
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 122
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
           +               V  EEG+ +A   G F +ME SA     V   FE+  R
Sbjct: 123 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL   ++++F      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 61
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + I    S +++ ++W  E+   C   V  +LVGNK DL 
Sbjct: 62  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 120
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
           +               V  EEG+ +A   G F +ME SA     V   FE+  R
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL   ++++F      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + I    S +++ ++W  E+   C   V  +LVGNK DL 
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 122
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
           +               V  EEG+ +A   G F +ME SA     V   FE+  R
Sbjct: 123 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL   ++++F      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + I    S +++ ++W  E+   C   V  +LVGNK DL 
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 122
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
           +               V  EEG+ +A   G F +ME SA     V   FE+  R
Sbjct: 123 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++GD  VGKS L  +F +  F  +   TI   +     +ID +     + DTAGQE
Sbjct: 14  YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 72
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
            F A+   Y R   G L+VY +T ++SF+ V R+ + +    D  +   +LV NK DL  
Sbjct: 73  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 132
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFEVVIREI 175
           +R V+ ++GK +A +  + ++ETSA D   NV+  F  ++R I
Sbjct: 133 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL  F++++F      T+   F+  + DI  DGK+V+  +WDTAGQ
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYIADIEVDGKQVELALWDTAGQ 83
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
           E +  +    Y      L+ + I    S +++ ++W  E+   C   V  +LVGNK DL 
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 142
Query: 132 --DSIR---------DVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
             +  R          V +EEG+ +A     F ++E SA     V   FE+  R
Sbjct: 143 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++GD  VGKS L  +F +  F      TI   ++    +ID +     + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQE 77
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
            F A+   Y R   G L+VY +T ++SF+ V R+ + +    D  +   +LV NK DL  
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFEVVIREI 175
           +R V+ ++GK +A +  + ++ETSA D   NV+  F  ++R I
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++GD  VGKS L  +F +  F  +   TI   +     +ID +     + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 77
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
            F A+   Y R   G L+VY +T ++SF+ V R+ + +    D  +   +LV NK DL  
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFEVVIREI 175
           +R V+ ++GK +A +  + ++ETSA D   NV+  F  ++R I
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++GD  VGKS L  +F +  F      TI   +     +ID +     + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 77
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
            F A+   Y R   G L+VY +T ++SF+ V R+ + +    D  +   +LV NK DL  
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFEVVIREI 175
           +R V+ ++GK +A +  + ++ETSA D   NV+  F  ++R I
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL  F++++F      T+   F+  + DI  DGK+V+  +WDTAGQ
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYIADIEVDGKQVELALWDTAGQ 83
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL- 131
           E +  +    Y      L+ + I    S +++  +W  E+  H    V  +LVGNK DL 
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKDLR 142
Query: 132 --DSIR---------DVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
             +  R          V +EEG+ +A     F ++E SA     V   FE+  R
Sbjct: 143 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 6/160 (3%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFA-RNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           L+++VL+GD  VGK++L S FA + E D + +  +G +   + + +DG++    + DT  
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 73  QERFRAVTS--AYYRGAVGALVVYDITRRSSFDSVKRWLEELT-THCDTAVGRMLVGNKC 129
            E+     S  +  +G    ++VY I  R SF+S      +L  TH    V  +LVGNK 
Sbjct: 62  AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 130 DLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169
           DL   R+VS EEG++ A      F+ETSA    NV   FE
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL   ++++F      T+   F+  V DI  DGK+V+  +WDTAG 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGL 66
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + I    S +++  +W  E+   C   V  +LVGNK DL 
Sbjct: 67  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 125
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
           +               V  EEG+ +A   G F +ME SA     V   FE+  R
Sbjct: 126 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL  F+++EF      T+   F+  V DI  DGK+V+  +WDTAGQ
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 83
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + +    S +++ ++W+ E+   C   V  +LV NK DL 
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN-VPIILVANKKDLR 142
Query: 133 SIRDVSTE------------EGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIR 173
           S   V TE            +G+++A   +   ++E SA     V   FE   R
Sbjct: 143 SDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 64
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 123
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 65
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 65
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
            +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 132 ----------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                     +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 73
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 132
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL   ++++F      T+   F+  + DI  DGK+V+  +WDTAGQ
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYIADIEVDGKQVELALWDTAGQ 63
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
           E +  +    Y      L+ + I    S +++ ++W  E+   C   V  +LVGNK DL 
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 122
Query: 132 --DSIR---------DVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
             +  R          V +EEG+ +A     F ++E SA     V   FE+  R
Sbjct: 123 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 176

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 66
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 125
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 69
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
            +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 132 ----------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                     +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 27  KSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +F    F      TI  +F  + +++D      +I DTAG E+F ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 87  AVGALVVYDITRRSSFDSVKRWLEELT-THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSL 145
             G ++VY +  + SF  +K   +++        V  +LVGNK DL+S R+VS+ EG++L
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 146 AEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           AEE G  FMETSA   T V+  F  ++R++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 67
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 126
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 65
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +    V I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 69
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
            +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 132 ----------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                     +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 20/174 (11%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL   ++ +F      T+   F+  V D+  DG+ V+  +WDTAGQ
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV---FENYVADVEVDGRRVELALWDTAGQ 68
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL- 131
           E +  +    Y  +   L+ + I    S ++V+ +W+ E+   C   V  +LVG K DL 
Sbjct: 69  EDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQ-GVPIILVGCKVDLR 127
Query: 132 -----------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
                      +  + V+++EG+S+A++ G   + E SA     V   FE   R
Sbjct: 128 NDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLRDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
            +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 132 ----------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                     +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S     +   +   V+ I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N+  S    T+   +   V+ I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
            +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 132 ----------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                     +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLED 63
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
           +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                    +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N+F S    T+   +   V+ I G+     ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLE 66
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
            +  +    Y      LV + +   SSF++VK +W+ E+T HC      +LVG + DL  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 132 ----------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
                     +  + ++ E  + LA + + + ++E SAL    ++  F+  I
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 9/177 (5%)
Query: 16  KIVLIGDSAVGKSNLLSRFAR--NEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW--DTA 71
           K+ ++G++ VGKS L+S F    ++F  +   T GVE     V I    V  +++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTT---HCDTAVGRMLVGNK 128
           G + ++   S Y+ G   A++V+D++   SF+S K W E L +     +  +  +LV NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 129 CDLDSIR-DVSTEEGKSLAEEEGLFFMETSA-LDSTNVEAAFEVVIREIYSNISRKV 183
            DL   R  V  +  +  A    L F + SA     + +A F  +    Y N   KV
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKV 198

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 16/179 (8%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           + K V++GD AVGK+ LL  +A + F      T+   +   V  + GK+    ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVT-VGGKQYLLGLYDTAGQ 76
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLD 132
           E +  +    Y      L+ + +   +SF +VK  W+ EL  +    V  +L+G + DL 
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN-VPFLLIGTQIDLR 135
Query: 133 ------------SIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSN 178
                         + +  E+G+ LA+E G   ++E SAL    ++  F+  I  I + 
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           ++K++L+G   VGKS L   F   E D       G  +   +V +DG+E    ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVE-DGPEAEAAGHTYDRSIV-VDGEEASLMVYDIWEQ 59
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLD 132
           +  R +           ++VY +T + SF+       +L     T  V  +LVGNK DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             R+VS +EG++ A      F+ETSA    NV+A FE V+R+I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           ++K++L+G   VGKS L   F   E D       G  +   +V +DG+E    ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVE-DGPEAEAAGHTYDRSIV-VDGEEASLMVYDIWEQ 64
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLD 132
           +  R +           ++VY +T + SF+       +L     T  V  +LVGNK DL 
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             R+VS +EG++ A      F+ETSA    NV+A FE V+R+I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           ++K++L+G   VGKS L   F   E D       G  +   +V +DG+E    ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVE-DGPEAEAAGHTYDRSIV-VDGEEASLMVYDIWEQ 64
Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLD 132
           +  R +           ++VY +T + SF+       +L     T  V  +LVGNK DL 
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             R+VS +EG++ A      F+ETSA    NV+A FE V+R+I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA---QIW-- 68
           +FK++L+G+S VGKS L   F   + DS  +     +   + + +D +EV      IW  
Sbjct: 23  IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 69  -DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT---THCDTAVGRML 124
            D  G  R   + +         L+V+ +T R SF  V   L  L     H D  V  +L
Sbjct: 83  GDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV--IL 135
Query: 125 VGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           VGNK DL   R+VS EEG+ LA       +ETSA    N    FE  +R+I
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Query: 15  FKIVLIGDSAVGKSNLLSRFA--RNEFDSNSKATIGVEFQTQVVDIDGKE---VKAQIWD 69
           +++VLIG+  VGKS L + FA   +  DS+ +  +G +   + + +DG+    +   +W+
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV-LGEDTYERTLMVDGESATIILLDMWE 96
Query: 70  TAGQERF-----RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRM 123
             G+  +       V  AY       L+VY IT R+SF+       +L     T  +  +
Sbjct: 97  NKGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 124 LVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           LVGNK DL   R+VS  EG++ A      F+ETSA    NV+  FE ++R++
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Query: 15  FKIVLIGDSAVGKSNLLSRFA--RNEFDSNSKATIGVEFQTQVVDIDGKE---VKAQIWD 69
           +++VLIG+  VGKS L + FA   +  DS+ +  +G +   + + +DG+    +   +W+
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWE 65
Query: 70  TAGQERF-----RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRM 123
             G+  +       V  AY       L+VY IT R+SF+       +L     T  +  +
Sbjct: 66  NKGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 124 LVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           LVGNK DL   R+VS  EG++ A      F+ETSA    NV+  FE ++R++
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Query: 15  FKIVLIGDSAVGKSNLLSRFA--RNEFDSNSKATIGVEFQTQVVDIDGKE---VKAQIWD 69
           +++VLIG+  VGKS L + FA   +  DS+ +  +G +   + + +DG+    +   +W+
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWE 65
Query: 70  TAGQERF-----RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRM 123
             G+  +       V  AY       L+VY IT R+SF+       +L     T  +  +
Sbjct: 66  NKGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 124 LVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           LVGNK DL   R+VS  EG++ A      F+ETSA    NV+  FE ++R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Query: 15  FKIVLIGDSAVGKSNLLSRFA--RNEFDSNSKATIGVEFQTQVVDIDGKE---VKAQIWD 69
           +++VLIG+  VGKS L + FA   +  DS+ +  +G +   + + +DG+    +   +W+
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWE 65
Query: 70  TAGQERF-----RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRM 123
             G+  +       V  AY       L+VY IT R+SF+       +L     T  +  +
Sbjct: 66  NKGENEWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 124 LVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           LVGNK DL   R+VS  EG++ A      F+ETSA    NV+  FE ++R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDT--- 70
           +FK++L+G+S VGKS L   F   + D+  +     +   + + +D +EV   ++D    
Sbjct: 12  VFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 71
Query: 71  --AG---QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT---THCDTAVGR 122
             AG   Q+       A+       L+V+ +T R SF  V   L  L     H D  V  
Sbjct: 72  GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-- 122
Query: 123 MLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +LVGNK DL   R+VS EEG+ LA       +ETSA    N    FE  +R+I
Sbjct: 123 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDT--- 70
           +FK++L+G+S VGKS L   F   + D   +     +   + + +D +EV   ++D    
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 71  --AG---QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT---THCDTAVGR 122
             AG   Q+       A+       L+V+ +T R SF  V   L  L     H D  V  
Sbjct: 62  GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-- 112
Query: 123 MLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +LVGNK DL   R+VS EEG+ LA       +ETSA    N    FE  +R+I
Sbjct: 113 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 27/189 (14%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+VL+GD   GK+ +L   A++ +      T+  E  T  ++ + + V+  +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDS-VKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +  V    Y  +   L+ +DI+R  + DS +K+W  E+  +C  +   +L+G K DL + 
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRT- 145
Query: 135 RDVST--------------EEGKSLAEEEGL-FFMETSALDSTNVEAAFEVVIREIYSNI 179
            D+ST              E+G ++A++ G   ++E SA  S       E  I  I+   
Sbjct: 146 -DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTA 197
Query: 180 SRKVLNSDA 188
           S   LN  +
Sbjct: 198 SMLCLNKPS 206

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 27/189 (14%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+VL+GD   GK+ +L   A++ +      T+  E  T  ++ + + V+  +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDS-VKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +  V    Y  +   L+ +DI+R  + DS +K+W  E+  +C +    +L+G K DL + 
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS-TRVLLIGCKTDLRT- 129
Query: 135 RDVST--------------EEGKSLAEEEGL-FFMETSALDSTNVEAAFEVVIREIYSNI 179
            D+ST              E+G ++A++ G   ++E SA  S       E  I  I+   
Sbjct: 130 -DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTA 181
Query: 180 SRKVLNSDA 188
           S   LN  +
Sbjct: 182 SMLCLNKPS 190

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 27/189 (14%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+VL+GD   GK+ +L   A++ +      T+  E  T  ++ + + V+  +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 70
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDS-VKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +  V    Y  +   L+ +DI+R  + DS +K+W  E+  +C  +   +L+G K DL + 
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRT- 128
Query: 135 RDVST--------------EEGKSLAEEEGL-FFMETSALDSTNVEAAFEVVIREIYSNI 179
            D+ST              E+G ++A++ G   ++E SA  S       E  I  I+   
Sbjct: 129 -DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTA 180
Query: 180 SRKVLNSDA 188
           S   LN  +
Sbjct: 181 SMLCLNKPS 189

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 27  KSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS+L+ RF +  F      TI   ++ QV+  D      QI DT G  +F A+       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 87  AVGALVVYDITRRSSFD---SVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGK 143
               ++V+ +T + S +    + + + ++    +  +  MLVGNKCD ++ R+V T E +
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED-IPVMLVGNKCD-ETQREVDTREAQ 137
Query: 144 SLAEEEGLFFMETSALDSTNVEAAF-EVVIREIYSNISRKVLNSDAYKA 191
           ++A+E    FMETSA  + NV+  F E++  E   N+S   LN D  ++
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMS---LNIDGKRS 183

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 17  IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF 76
           + ++G    GKS L  +F    F S     +   + ++   +D + V  ++ DTA  +  
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 77  RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDS 133
           R     Y   A   LVVY +  R SFDS   +LE L  H      ++  +L+GNK D+  
Sbjct: 83  RNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSA-LDSTNVEAAFEVVIRE 174
            R V+  EG +LA   G  F E SA LD  +V+  F   +RE
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 377
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
           + R +   YY G  G + V D   R   D  ++ L  +    +     +L+  NK DL D
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 133 SIRDVSTEE 141
           +++    +E
Sbjct: 438 AMKPHEIQE 446

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K++++G    GK+ +L +F+ NE   ++  TIG   +  V++      +  +WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 77
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSI 134
            R+  + YY      +VV D T R      +  L ++  H D    G ++  NK D+   
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 135 RDVS 138
             V+
Sbjct: 138 MTVA 141

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K++++G    GK+ +L +F+ NE   ++  TIG   +  V++      +  +WD  GQE 
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 78
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSI 134
            R+  + YY      +VV D T R      +  L ++  H D    G ++  NK D+   
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 135 RDVS 138
             V+
Sbjct: 139 MTVA 142

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  GQ+
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 68
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
           + R +   YY G  G + V D   R   D  ++ L  +    +     +L+  NK DL D
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 133 SIRDVSTEE 141
           +++    +E
Sbjct: 129 AMKPHEIQE 137

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 67
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
           + R +   YY G  G + V D   R   D  ++ L  +    +     +L+  NK DL D
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
Query: 133 SIRDVSTEE 141
           +++    +E
Sbjct: 128 AMKPHEIQE 136

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K++++G    GK+ +L +F+ NE    S  TIG   +  V++      +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVIN----NTRFLMWDIGGQES 72
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSI 134
            R+  + YY      +VV D T R      +  L ++  H D    G ++  NK D+   
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 135 RDVS 138
             V+
Sbjct: 133 MTVA 136

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
           + R +   YY G  G + V D   R   D  ++ L  +    +     +L+  NK DL D
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 133 SIRDVSTEEGKSLA 146
           +++    +E   L 
Sbjct: 116 AMKPHEIQEKLGLT 129

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
           + R +   YY G  G + V D   R   D  ++ L  +    +     +L+  NK DL D
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 133 SIRDVSTEEGKSLA 146
           +++    +E   L 
Sbjct: 116 AMKPHEIQEKLGLT 129

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K++++G    GK+ +L +F+ NE   ++  TIG   +  V++      +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 72
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSI 134
            R+  + YY      +VV D T R      +  L ++  H D    G ++  NK D+   
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 135 RDVS 138
             V+
Sbjct: 133 MTVA 136

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            ++ L+G    GK+  ++  A  +F  +   T+G   +     +    V  +IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK----VTKGNVTIKIWDIGGQP 78
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
           RFR++   Y RG    + + D   R   ++ +  L  L        +  +++GNK DL +
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN 138
Query: 134 IRD 136
             D
Sbjct: 139 ALD 141

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            ++ L+G    GK+  ++  A  +F+ +   T+G   +     I    V  ++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQP 78
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
           RFR++   Y RG    + + D   +   ++ K  L  L        +  +++GNK DL  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138
Query: 134 IRD 136
             D
Sbjct: 139 ALD 141

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            ++ L+G    GK+  ++  A  +F+ +   T+G   +     I    V  ++WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQP 87
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
           RFR++   Y RG    + + D   +   ++ K  L  L        +  +++GNK DL  
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 147
Query: 134 IRD 136
             D
Sbjct: 148 ALD 150

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFD--SNSKATIGVE---FQTQVVDIDGKEVKAQIWDT 70
           K+ ++G++  GK+ LL +  + +        AT+G++   +  Q+ D   +++   +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 71  AGQERFRAVTSAYYRGAVGALVVYDITR-RSSFDSVKRWLEELTTHCDTAVGRMLVGNKC 129
           AG+E F +    +       L VYD+++ ++  D+ K WL  +     ++   +LVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 130 DL 131
           D+
Sbjct: 121 DV 122

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFD--SNSKATIGVE---FQTQVVDIDGKEVKAQIWDT 70
           K+ ++G++  GK+ LL +  + +        AT+G++   +  Q+ D   +++   +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 71  AGQERFRAVTSAYYRGAVGALVVYDITR-RSSFDSVKRWLEELTTHCDTAVGRMLVGNKC 129
           AG+E F +    +       L VYD+++ ++  D+ K WL  +     ++   +LVG   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 130 DL 131
           D+
Sbjct: 123 DV 124

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +F   + D+ S  T+G   +T    ++ +  K  IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-- 131
             R+    Y+    G + V D   R      +R L+ L      A   +L+  NK DL  
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 131
Query: 132 ----DSIRDV 137
               ++IR+V
Sbjct: 132 ALSSNAIREV 141

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           +I+ +G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
            R +   YY G  G + V D   R   D  ++ L  +    +     +L+  NK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDL 113

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G    GK+ +L +    E  + +  TIG   +T    +  K +   +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLD 132
           R R++   YYR   G + V D   RS     +  ++ +    +      LV  NK DL 
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLP 114

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G    GK+ +L +    E  + +  TIG   +T    +  K +   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLD 132
           R R++   YYR   G + V D   RS     +  ++ +    +      LV  NK DL 
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLP 131

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G    GK+ +L +    E  + +  TIG   +T    +  K +   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLD 132
           R R++   YYR   G + V D   RS     +  ++ +    +      LV  NK DL 
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLP 131

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  G +
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 57
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
           + R +   YY G  G + V D   R   D  ++ L  +    +     +L+  NK DL D
Sbjct: 58  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 117
Query: 133 SIRDVSTEEGKSLA 146
           +++    +E   L 
Sbjct: 118 AMKPHEIQEKLGLT 131

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  G +
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 68
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
           + R +   YY G  G + V D   R   D  ++ L  +    +     +L+  NK DL D
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 133 SIRDVSTEE 141
           +++    +E
Sbjct: 129 AMKPHEIQE 137

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  G +
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 58
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
           + R +   YY G  G + V D   R   D  ++ L  +    +     +L+  NK DL D
Sbjct: 59  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 118
Query: 133 SIRDVSTEEGKSL 145
           +++    +E   L
Sbjct: 119 AMKPHEIQEKLGL 131

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +F   + D+ S  T+G   +T    ++ +  K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
             R+    Y+    G + V D   R      +R L+ L      A   +L+  NK DL
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +F   + D+ S  T+G   +T    ++ +  K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
             R+    Y+    G + V D   R      +R L+ L      A   +L+  NK DL
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    E    +  TIG   +T    ++ K +   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE--LTTHCDTAVGRMLVGNKCDLD 132
           R R +   Y++   G + V D   R     V   L++  L      AV  +L  NK DL 
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV-LLLFANKQDLP 131
Query: 133 SIRDVS 138
           +   +S
Sbjct: 132 NAMAIS 137

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K++++G    GK+ +L +F  NE    S  TIG   +  VV    K     +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVEEIVV----KNTHFLMWDIGGQES 72
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
            R+  + YY      ++V D   R      K  L  +  H D     +L+  NK D+
Sbjct: 73  LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDM 129

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           +I+++G  A GK+ +L +    E  + +  TIG   +T    ++ + +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEVVT-TIPTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
            R +   YY    G + V D   R   D  +  L  +    +     +LV  NK DL +
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPN 132

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+++L +    E  + +  TIG   +T    ++ K +   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
           + R +   YY+     + V D   R      +  L ++    +     +LV  NK DL  
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 134 IRDVS 138
              +S
Sbjct: 133 AMSIS 137

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    E  + +  TIG   +T    ++ K +   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
           + R +   Y++   G + V D   R   +  +  L  +    +     +LV  NK DL +
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    E  + +  TIG   +T    ++ K +   +WD  GQ+
Sbjct: 17  MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
           + R +   Y++   G + V D   R   +  +  L  +    +     +LV  NK DL +
Sbjct: 72  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 131

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    E  + +  TIG   +T    ++ K +   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
           + R +   Y++   G + V D   R   +  +  L  +    +     +LV  NK DL +
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 132

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    E    +  TIG   +T    ++ K +   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 75  RFRAVTSAYYRGAVGALVVYDITRR----SSFDSVKRWLEE 111
           + R +   Y++   G + V D   R     S D +++ L+E
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE 125

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    E  + +  TIG   +T    ++ K +   +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
           + R +   Y++   G + V D   R   +  +  L  +    +     +LV  NK DL +
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    E  + +  TIG   +T    ++ K +   +WD  GQ+
Sbjct: 21  MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSF----DSVKRWLEE 111
           + R +   Y++   G + V D   R       D + R L E
Sbjct: 76  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 116

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G    GK+ +L R    E    +K TIG   +T    +  K +K  +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVET----LSYKNLKLNVWDLGGQT 73
Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCD 130
             R     YY      + V D T +    +  + L  +    +     +LV  NK D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-112
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-111
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-111
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-110
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-110
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-110
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-110
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-109
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-109
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-108
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-108
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-108
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-108
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-108
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-107
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-106
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-106
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-106
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-106
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-106
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-106
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-105
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-105
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-105
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-105
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-105
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-104
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-104
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-104
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-104
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-104
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-103
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-103
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-103
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-103
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-103
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-100
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-100
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-100
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-99
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	4e-95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	6e-95
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-90
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-85
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	5e-84
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	7e-83
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-79
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-79
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-79
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-78
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-77
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-76
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	4e-75
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	5e-75
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	9e-74
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	3e-72
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	8e-72
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	3e-71
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	4e-71
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-70
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-70
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	3e-69
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	5e-69
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-68
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	6e-68
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-67
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	5e-67
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-62
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-59
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	4e-57
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-53
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	7e-48
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-46
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	4e-46
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	6e-46
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-45
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-44
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-44
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-42
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	4e-42
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	4e-42
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-41
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-41
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	8e-33
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	4e-27
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	8e-21
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	5e-14
3llu_A	196	RAS-related GTP-binding protein C; structural geno	4e-13
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	7e-13
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	7e-13
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	8e-13
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	8e-13
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	2e-12
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	4e-12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	6e-12
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	8e-12
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-11
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-11
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-11
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	7e-10
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-09
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-09
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-07
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	2e-07
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	3e-07
2fh5_B	214	SR-beta, signal recognition particle receptor beta	6e-07
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	6e-04
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	8e-04

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  318 bits (818), Expect = e-112
 Identities = 111/196 (56%), Positives = 145/196 (73%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +YLFK+VLIGDS VGKSNLLSRF RNEF+  SK+TIGVEF T+ + +DGK +KAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQER+R +TSAYYRGAVGAL+VYDI +  ++++V+RWL+EL  H D+ +  MLVGNK DL
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKA 191
             +R V T+E ++ AE+  L F+ETSALDSTNVE AF+ ++ EIY  +S+K +   A   
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD 182

Query: 192 ELSVNRVTLVKDGANS 207
           E   N V  +     +
Sbjct: 183 ESPGNNVVDISVPPTT 198

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  317 bits (814), Expect = e-111
 Identities = 89/186 (47%), Positives = 118/186 (63%)

Query: 2   GKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK 61
           G   RG    ++LFK ++IG +  GKS LL +F  N+F  +S  TIGVEF ++VV++ GK
Sbjct: 13  GLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGK 72

Query: 62  EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG 121
            VK QIWDTAGQERFR+VT +YYRGA GAL+VYDIT R +++S+  WL +  T     + 
Sbjct: 73  TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV 132

Query: 122 RMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISR 181
            +L GNK DLD  R+V+  E    A+E  L F+ETSAL   NVE AF    R I + I  
Sbjct: 133 VILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192

Query: 182 KVLNSD 187
             L+ +
Sbjct: 193 GELDPE 198

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  315 bits (809), Expect = e-111
 Identities = 81/176 (46%), Positives = 116/176 (65%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           ++LFK ++IG++  GKS LL +F   +F  +S  TIGVEF ++++++ GK VK QIWDTA
Sbjct: 8   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 67

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR+VT +YYRGA GAL+VYDIT R +++++  WL +        +  +L GNK DL
Sbjct: 68  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 127

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 187
           D+ R+V+  E    A+E  L F+ETSAL   NVE AF    R+I + I    L+ +
Sbjct: 128 DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPE 183

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  315 bits (808), Expect = e-110
 Identities = 97/207 (46%), Positives = 138/207 (66%), Gaps = 6/207 (2%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +YLFK++LIG+S VGKS LL RF+ + + ++  +TIGV+F+ + V++DGK VK QIWDTA
Sbjct: 6   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR +TS+YYRG+ G ++VYD+T + SF+ VK WL+E+  +  + V ++LVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKA 191
              R V  +  K  A+   + F+ETSALDSTNVE AF  + R+I  ++S++ LN    K 
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKK 185

Query: 192 ELSVNRVTLVKDGANSSKGSMMDFSCC 218
           E   N V L      ++ G      CC
Sbjct: 186 EDKGN-VNLKGQSLTNTGG-----CCC 206

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  313 bits (805), Expect = e-110
 Identities = 104/181 (57%), Positives = 135/181 (74%)

Query: 2   GKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK 61
           G   RG     ++FK+VLIG+S VGK+NLLSRF RNEF  +S+ TIGVEF T+ V +   
Sbjct: 13  GLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTA 72

Query: 62  EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG 121
            VKAQIWDTAG ER+RA+TSAYYRGAVGAL+V+D+T+  ++  V+RWL+EL  H +  + 
Sbjct: 73  AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIV 132

Query: 122 RMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISR 181
            MLVGNK DL   R+V TEE +  AE  GL F+ETSALDSTNVE AFE V++EI++ +S+
Sbjct: 133 VMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192

Query: 182 K 182
           +
Sbjct: 193 Q 193

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  313 bits (805), Expect = e-110
 Identities = 110/215 (51%), Positives = 146/215 (67%), Gaps = 10/215 (4%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           + LFKIVLIGDS VGKSNLLSRF +NEF+ +SK+TIGVEF T+ ++I+GK +KAQIWDTA
Sbjct: 11  DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTA 70

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQER+RA+TSAYYRGAVGAL+VYDI++ SS+++   WL EL  + D  V   L+GNK DL
Sbjct: 71  GQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDL 130

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKA 191
             +R V TEE K+ A+E  L F ETSAL+S NV+ AFE +I  IY  +S+  ++     A
Sbjct: 131 AHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSA 190

Query: 192 ELSVN--------RVTLVKDGANSSKGSMMDFSCC 218
             + N         ++L      + K +    +CC
Sbjct: 191 NGNANGASAPNGPTISLTPTPNENKKAN--GNNCC 223

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  312 bits (802), Expect = e-110
 Identities = 107/165 (64%), Positives = 136/165 (82%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +YLFK+VLIGDS VGKSNLLSRF RNEF+  SK+TIGVEF T+ + +DGK +KAQIWDTA
Sbjct: 27  DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 86

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           G ER+RA+TSAYYRGAVGAL+VYDI +  ++++V+RWL+EL  H D+ +  MLVGNK DL
Sbjct: 87  GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 146

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
             +R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY
Sbjct: 147 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  309 bits (793), Expect = e-109
 Identities = 85/166 (51%), Positives = 116/166 (69%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           Y+FK ++IGD  VGKS LL +F   +F ++   TIGVEF T+++++ G+++K QIWDTAG
Sbjct: 14  YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFRAVT +YYRGA GAL+VYDITRRS+++ +  WL +     +     +L+GNK DL+
Sbjct: 74  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           + RDV+ EE K  AEE GL F+E SA    NVE AF    ++IY N
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  309 bits (795), Expect = e-109
 Identities = 75/177 (42%), Positives = 112/177 (63%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           ++LFKIVLIG++ VGK+ L+ RF +  F     ATIGV+F  + V+I+G++VK QIWDTA
Sbjct: 24  DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR++T +YYR A   ++ YDIT   SF  +  WL E+  +    V  +LVGNK DL
Sbjct: 84  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 188
              R+VS +  +  +E + ++++ETSA +S NVE  F  +   + S   +  L ++ 
Sbjct: 144 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNV 200

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  309 bits (793), Expect = e-108
 Identities = 92/172 (53%), Positives = 119/172 (69%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK ++IGD+ VGKS LL +F    F      TIGVEF  ++V+IDGK++K QIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QE FR++T +YYRGA GAL+VYDITRR +F+ +  WLE+   H  + +  ML+GNK DL+
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 184
           S RDV  EEG++ A E GL FMETSA  + NVE AF    +EIY  I + + 
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 191

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  307 bits (789), Expect = e-108
 Identities = 69/176 (39%), Positives = 109/176 (61%)

Query: 7   GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQ 66
             G +    K+VL+GD   GKS+L+ RF +++F    ++TIG  F +Q + ++   VK +
Sbjct: 5   AAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFE 64

Query: 67  IWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVG 126
           IWDTAGQER+ ++   YYRGA  A++V+D+T ++SF+  K+W++EL    +  +   L G
Sbjct: 65  IWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG 124

Query: 127 NKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
           NK DL   R V+ E+ ++ A+E GLFFMETSA  +TNV+  F  + R +      +
Sbjct: 125 NKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  308 bits (790), Expect = e-108
 Identities = 86/180 (47%), Positives = 124/180 (68%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +YLFK++LIGDS VGKS LL RFA + +  +  +TIGV+F+ + +++DGK +K QIWDTA
Sbjct: 14  DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 73

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+  +    V ++LVGNKCDL
Sbjct: 74  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKA 191
            + + V     K  A+  G+ F+ETSA ++TNVE +F  +  EI   +        A K+
Sbjct: 134 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKS 193

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  308 bits (791), Expect = e-108
 Identities = 73/176 (41%), Positives = 118/176 (67%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +Y+FKI++IG+S+VGK++ L R+A + F     +T+G++F+ + +  + K +K QIWDTA
Sbjct: 6   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 65

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           G ER+R +T+AYYRGA+G +++YDIT   SF++V+ W  ++ T+       +LVGNKCD+
Sbjct: 66  GLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 125

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 187
           +  R VS+E G+ LA+  G  F E SA D+ NV+  FE ++  I   +S  +  +D
Sbjct: 126 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 181

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  307 bits (788), Expect = e-108
 Identities = 84/177 (47%), Positives = 126/177 (71%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +YLFK++LIGDS VGK+ +L RF+ + F+S   +TIG++F+ + +++DGK +K QIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR +T+AYYRGA+G ++VYDIT   SFD+++ W+  +  H    V +M++GNKCD+
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 188
           +  R VS E G+ LA + G+ FMETSA  + NVE AF  + R+I + + +    + A
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATAA 182

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  305 bits (784), Expect = e-107
 Identities = 80/208 (38%), Positives = 131/208 (62%), Gaps = 1/208 (0%)

Query: 1   MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG 60
           +      G   + + KI+LIGDS VGKS LL RF  ++F+ +   TIG++F+ + VDI+G
Sbjct: 7   VSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 66

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAV 120
           K+VK Q+WDTAGQERFR +T+AYYRGA+G ++VYD+T   +F ++K+W + +  H +   
Sbjct: 67  KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEA 126

Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
             +LVGNK D+++ R V+ ++G++LA+E G+ F+E+SA +  NV   F  + + I   I 
Sbjct: 127 QLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 185

Query: 181 RKVLNSDAYKAELSVNRVTLVKDGANSS 208
              L       E +++  +   + + S+
Sbjct: 186 SNKLVGVGNGKEGNISINSGSGNSSKSN 213

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  302 bits (777), Expect = e-106
 Identities = 69/168 (41%), Positives = 98/168 (58%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           G   Y FK+VL+G+  VGK++L+ R+  N+F+     T+G  F T+ ++I GK V   IW
Sbjct: 1   GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
           DTAGQERF A+   YYR + GA++VYDIT   SF  VK W++EL       +   +VGNK
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
            DL+  R VS +E +S AE  G     TSA  +  +E  F  + + + 
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  303 bits (778), Expect = e-106
 Identities = 81/179 (45%), Positives = 118/179 (65%), Gaps = 3/179 (1%)

Query: 7   GGGGEEY--LFKIVLIGDSAVGKSNLLSRFARNEFDSNS-KATIGVEFQTQVVDIDGKEV 63
           G G + Y   FK++L+GDS VGK+ LL RF    F + +  +T+G++F+ +V+D+DG +V
Sbjct: 1   GSGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV 60

Query: 64  KAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRM 123
           K Q+WDTAGQERFR+VT AYYR A   L++YD+T ++SFD+++ WL E+  +    V  M
Sbjct: 61  KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM 120

Query: 124 LVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
           L+GNK D    R V  E+G+ LA+E GL FMETSA    NV+ AF  + +E+     + 
Sbjct: 121 LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  302 bits (777), Expect = e-106
 Identities = 82/175 (46%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           ++LFK+++IGDS VGKS+LL RFA N F  +   TIGV+F+ + V+I+G++VK QIWDTA
Sbjct: 7   DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR +TS YYRG  G +VVYD+T   SF +VKRWL E+  +CD    R+LVGNK D 
Sbjct: 67  GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC-RILVGNKNDD 125

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNS 186
              + V TE+    A + G+   ETSA ++ NVE  F  +   +       +   
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  302 bits (776), Expect = e-106
 Identities = 84/168 (50%), Positives = 121/168 (72%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +YLFK++LIGDS VGKS LL RFA + +  +  +TIGV+F+ + +++DGK +K QIWDTA
Sbjct: 31  DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 90

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+  +    V ++LVGNKCDL
Sbjct: 91  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
            + + V     K  A+  G+ F+ETSA ++TNVE +F  +  EI   +
Sbjct: 151 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 198

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  301 bits (774), Expect = e-106
 Identities = 72/169 (42%), Positives = 114/169 (67%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +Y+FK++LIG+S+VGK++ L R+A + F     +T+G++F+ + V    K +K QIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQER+R +T+AYYRGA+G L++YDI  + SF +V+ W  ++ T+       +LVGNKCDL
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
           +  R V  E+G+ LA++ G  F E SA ++ NV+  FE ++  I   ++
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  300 bits (772), Expect = e-106
 Identities = 76/170 (44%), Positives = 104/170 (61%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           G +   FK+VL+G+SAVGKS+L+ RF + +F    ++TIG  F TQ V +D   VK +IW
Sbjct: 1   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
           DTAGQER+ ++   YYRGA  A+VVYDIT   SF   K W++EL       +   L GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
            DL + R V  +E +S A++  L FMETSA  S NV   F  + +++  N
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  301 bits (772), Expect = e-105
 Identities = 70/174 (40%), Positives = 105/174 (60%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           G      K+ L+GD+ VGKS+++ RF ++ FD N   TIG  F T+ V    +  K  IW
Sbjct: 18  GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIW 77

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
           DTAGQERF ++   YYRG+  A++VYDIT++ SF ++K+W++EL  H    +   + GNK
Sbjct: 78  DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK 137

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
           CDL  IR+V  ++ K  AE  G   +ETSA ++ N+E  F+ + R+I      +
Sbjct: 138 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  300 bits (771), Expect = e-105
 Identities = 86/189 (45%), Positives = 122/189 (64%), Gaps = 5/189 (2%)

Query: 2   GKEERGGGGEE----YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVD 57
           G   RG G  +    +LFK+VL+GD++VGK+ ++ RF    F     +TIGV+F  + ++
Sbjct: 13  GLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLE 72

Query: 58  IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD 117
           I GK VK QIWDTAGQERFR +T +YYR A GA++ YDIT+RSSF SV  W+E++  +  
Sbjct: 73  IQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG 132

Query: 118 TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIY 176
           + + ++L+GNK DL  +R+VS  E +SLAE    L  +ETSA DS+NVE AF  V  E+ 
Sbjct: 133 SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192

Query: 177 SNISRKVLN 185
                 + +
Sbjct: 193 MRHGGPLFS 201

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  299 bits (768), Expect = e-105
 Identities = 68/169 (40%), Positives = 98/169 (57%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           G      K+ L+GD+ VGKS+++ RF  + FD N   TIG  F T+ V    +  K  IW
Sbjct: 1   GSALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIW 60

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
           DTAG ERFRA+   YYRG+  A++VYDIT+  +F ++K W+ EL  H   ++   + GNK
Sbjct: 61  DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177
           CDL  +R+V   + K  A+     F+ETSA ++ N+   F  + R I S
Sbjct: 121 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  300 bits (770), Expect = e-105
 Identities = 74/169 (43%), Positives = 116/169 (68%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +Y+FK+++IG+S+VGK++ L R+A + F     +T+G++F+ + V    K VK QIWDTA
Sbjct: 21  DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTA 80

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQER+R +T+AYYRGA+G +++YDIT   SF++V+ W  ++ T+       +LVGNKCD+
Sbjct: 81  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM 140

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
           +  R V TE+G+ LAE+ G  F E SA ++ +V  AFE ++  I   +S
Sbjct: 141 EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  300 bits (770), Expect = e-105
 Identities = 66/180 (36%), Positives = 117/180 (65%), Gaps = 2/180 (1%)

Query: 2   GKEERGGGGE-EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG 60
           G   RG     ++  ++++IG   VGK++L+ RF  + F    K+T+GV+F+ + V++ G
Sbjct: 13  GLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG 72

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAV 120
           K+++ QIWDTAGQERF ++TSAYYR A G ++VYDIT++ +FD + +W++ +  +     
Sbjct: 73  KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA 132

Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
             +LVGNK D ++ R+++ ++G+  A++  G+ F E SA D+ NV+  F  ++ +I   +
Sbjct: 133 ELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  299 bits (768), Expect = e-104
 Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 10/206 (4%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
             FK+V +G+ +VGK++L++RF  + FD+  +ATIG++F ++ + ++ + V+ Q+WDTAG
Sbjct: 15  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
            ERFR++  +Y R +  A+VVYDIT  +SF    +W++++ T   + V  MLVGNK DL 
Sbjct: 75  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 134

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
             R VS EEG+  A+E  + F+ETSA    NV+  F  V   +    S +  + +     
Sbjct: 135 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRE----- 189

Query: 193 LSVNRVTLVKDGANSSKGSMMDFSCC 218
             +  + L K              C 
Sbjct: 190 -DMIDIKLEKPQEQPVSEG----GCL 210

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  297 bits (764), Expect = e-104
 Identities = 59/167 (35%), Positives = 94/167 (56%), Gaps = 1/167 (0%)

Query: 10  GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWD 69
           G E   K+V++G+ AVGKS+++ R+ +  F  + K TIGV+F  + + ++ ++V+  +WD
Sbjct: 1   GSEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWD 60

Query: 70  TAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKC 129
           TAGQE F A+T AYYRGA   ++V+  T R SF+++  W E++           LV NK 
Sbjct: 61  TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKI 119

Query: 130 DLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
           DL     +  EE + LA+   L F  TS  +  NV   F+ +  +  
Sbjct: 120 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  297 bits (762), Expect = e-104
 Identities = 78/169 (46%), Positives = 119/169 (70%), Gaps = 1/169 (0%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           + + KI+LIGDS VGKS LL RF  ++F+ +   TIG++F+ + VDI+GK+VK QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR +T+AYYRGA+G ++VYDIT   +F ++K+W + +  H +     +LVGNK D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
           ++ R V+ ++G++LA+E G+ F+E+SA +  NV   F  + + I   I 
Sbjct: 121 ET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 168

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  297 bits (763), Expect = e-104
 Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE-VKAQI 67
           G      KIV++GD A GK++L + FA+  F    K TIG++F  + + + G   V  QI
Sbjct: 1   GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60

Query: 68  WDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWL---EELTTHCDTAVGRML 124
           WD  GQ     +   Y  GA G L+VYDIT   SF++++ W    ++++   +T     L
Sbjct: 61  WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120

Query: 125 VGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
           VGNK DL+ +R +  E+     +E G      SA    +V   F+ V  EI      K
Sbjct: 121 VGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  297 bits (763), Expect = e-104
 Identities = 67/186 (36%), Positives = 112/186 (60%), Gaps = 11/186 (5%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID----------GK 61
           +YL K + +GDS VGK+++L ++   +F+S    T+G++F+ + V             G+
Sbjct: 9   DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68

Query: 62  EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-V 120
            +  Q+WDTAG ERFR++T+A++R A+G L+++D+T   SF +V+ W+ +L  H  +   
Sbjct: 69  RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128

Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
             +L GNK DL+  R V  EE + LAE+ G+ + ETSA + TN+  A E+++  I   + 
Sbjct: 129 DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRME 188

Query: 181 RKVLNS 186
           R V  S
Sbjct: 189 RSVDKS 194

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  297 bits (763), Expect = e-103
 Identities = 68/198 (34%), Positives = 115/198 (58%), Gaps = 11/198 (5%)

Query: 2   GKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK 61
           G   RG G  +YL K++ +GDS VGK+  L R+  N+F+     T+G++F+ + V  + +
Sbjct: 13  GLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 72

Query: 62  E----------VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE 111
                      V  Q+WDTAGQERFR++T+A++R A+G L+++D+T + SF +V+ W+ +
Sbjct: 73  GPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 132

Query: 112 LTTHCDTA-VGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV 170
           L  +        +L+GNK DL   R+V+  + + LA++ G+ + ETSA    NVE A E 
Sbjct: 133 LQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVET 192

Query: 171 VIREIYSNISRKVLNSDA 188
           ++  I   + + V  +  
Sbjct: 193 LLDLIMKRMEQCVEKTQI 210

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  296 bits (759), Expect = e-103
 Identities = 70/168 (41%), Positives = 109/168 (64%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           G     FK+V +G+ +VGK++L++RF  + FD+  +ATIG++F ++ + ++ + V+ Q+W
Sbjct: 9   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 68

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
           DTAGQERFR++  +Y R +  A+VVYDIT  +SF    +W++++ T   + V  MLVGNK
Sbjct: 69  DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNK 128

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
            DL   R VSTEEG+  A+E  + F+ETSA    NV+  F  V   + 
Sbjct: 129 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  295 bits (757), Expect = e-103
 Identities = 76/176 (43%), Positives = 107/176 (60%), Gaps = 2/176 (1%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
              KI++IG+S VGKS+LL RF  + FD    ATIGV+F+ + + +DG + K  IWDTAG
Sbjct: 14  TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 73

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDL 131
           QERFR +T +YYRGA G ++VYD+TRR +F  +  WL EL T+C    +  MLVGNK D 
Sbjct: 74  QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 187
           ++ R+V   EG   A +  + F+E SA     V+ AFE ++ +I          + 
Sbjct: 134 EN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQ 188

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  295 bits (757), Expect = e-103
 Identities = 74/172 (43%), Positives = 105/172 (61%), Gaps = 5/172 (2%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
             +FKI++IGDS VGK+ L  RF    F   ++ATIGV+F+ + VDIDG+ +K Q+WDTA
Sbjct: 18  SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 77

Query: 72  GQERFR-AVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKC 129
           GQERFR ++   YYR     + VYD+T  +SF S+  W+EE   H     + R+LVGNKC
Sbjct: 78  GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKC 137

Query: 130 DLDSIRDVSTEEGKSLAEEEGLFFMETSAL---DSTNVEAAFEVVIREIYSN 178
           DL S   V T+  +  A+   +   ETSA    D+ +VEA F  +  ++ S+
Sbjct: 138 DLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  295 bits (757), Expect = e-103
 Identities = 70/171 (40%), Positives = 102/171 (59%), Gaps = 6/171 (3%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +  +KIVL GD+AVGKS+ L R  +NEF  N  AT+GV+FQ + + +DG+    Q+WDTA
Sbjct: 26  QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTA 85

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR++  +Y+R A G L++YD+T   SF +++ W++ +       V  MLVGNK D+
Sbjct: 86  GQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADI 145

Query: 132 DSI------RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
                    + V    G+ LA   G  F ETSA D +N+  A   + RE+ 
Sbjct: 146 RDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  289 bits (742), Expect = e-100
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 1/178 (0%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVE-FQTQVVDIDGKEVKAQIWDT 70
           E  +KI LIGD  VGK+  ++R     F+ N  AT+G        +D  G  +K  +WDT
Sbjct: 9   ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDT 68

Query: 71  AGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCD 130
           AGQE+   +   YY GA GA++ +D+T R +  ++ RW++E           ++  NK D
Sbjct: 69  AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKID 128

Query: 131 LDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 188
           + + + +S +    + + +   + E SA  + N    F  + R          +++  
Sbjct: 129 IKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVN 186

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  287 bits (738), Expect = e-100
 Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 6/175 (3%)

Query: 10  GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWD 69
           G+  LFK++L+GD  VGKS+L++R+  N+FD+    TIGVEF  + +++DG  V  QIWD
Sbjct: 3   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62

Query: 70  TAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA----VGRMLV 125
           TAGQERFR++ + +YRG+   L+ + +    SF ++  W +E   + D         +++
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 126 GNKCDLDSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
           GNK D+   R VSTEE ++   + G   + ETSA D+TNV AAFE  +R + +  
Sbjct: 123 GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  287 bits (737), Expect = e-100
 Identities = 62/211 (29%), Positives = 112/211 (53%), Gaps = 14/211 (6%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           + L K++++GDS VGK++L++++   +F +  KATIG +F T+ V +D + V  QIWDTA
Sbjct: 6   KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTA 65

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA----VGRMLVGN 127
           GQERF+++  A+YRGA   ++V+D+T  ++F ++  W +E               +++GN
Sbjct: 66  GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125

Query: 128 KCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 187
           K DL++ +  +         +  + + ETSA ++ NVE AF+ + R      +   L ++
Sbjct: 126 KIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 185

Query: 188 AYKAELSVNRVTLVKDGANSSKGSMMDFSCC 218
                     + L K+    +       SC 
Sbjct: 186 ------FPEPIKLDKNERAKASAE----SCS 206

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  286 bits (734), Expect = 2e-99
 Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 9/184 (4%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFAR--NEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW-- 68
              K+ ++G++ VGKS L+S F    ++F  +   T GVE     V I    V  +++  
Sbjct: 19  LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLL 78

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL---TTHCDTAVGRMLV 125
           DTAG + ++   S Y+ G   A++V+D++   SF+S K W E L       +  +  +LV
Sbjct: 79  DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138

Query: 126 GNKCDLDSIRD-VSTEEGKSLAEEEGLFFMETSA-LDSTNVEAAFEVVIREIYSNISRKV 183
            NK DL   R  V  +  +  A    L F + SA     + +A F  +    Y N   KV
Sbjct: 139 ANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKV 198

Query: 184 LNSD 187
               
Sbjct: 199 AAFQ 202

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  276 bits (707), Expect = 4e-95
 Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 3/184 (1%)

Query: 5   ERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVK 64
               G  +  FK+VL+GD   GK+  + R    EF+    AT+GVE    V   +   +K
Sbjct: 6   SAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 65

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRML 124
             +WDTAGQE+F  +   YY  A  A++++D+T R ++ +V  W  +L   C+     +L
Sbjct: 66  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVL 124

Query: 125 VGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 184
            GNK D+   +     +      ++ L + + SA  + N E  F  + R++  + + + +
Sbjct: 125 CGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 182

Query: 185 NSDA 188
              A
Sbjct: 183 AMPA 186

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  274 bits (702), Expect = 6e-95
 Identities = 65/175 (37%), Positives = 107/175 (61%), Gaps = 7/175 (4%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG-KEVKAQIWDT 70
           + + K++++GDS VGK++L+ R+  +++    KATIG +F T+ V +DG K    Q+WDT
Sbjct: 6   KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDT 65

Query: 71  AGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVG 126
           AGQERF+++  A+YRGA   ++VYD+T  SSF+++K W +E   H +         +++G
Sbjct: 66  AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILG 125

Query: 127 NKCDL-DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
           NK D  +S + VS +  + LA+  G +    TSA ++ NV+ AFE + R      
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  263 bits (674), Expect = 2e-90
 Identities = 65/209 (31%), Positives = 104/209 (49%), Gaps = 40/209 (19%)

Query: 8   GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA-- 65
           G  ++  +K VL+G+S+VGKS+++ R  ++ F  N+  TIG  F T VV+++   +K   
Sbjct: 1   GMEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNS 60

Query: 66  -----------------------------------QIWDTAGQERFRAVTSAYYRGAVGA 90
                                               IWDTAGQER+ ++   YYRGA  A
Sbjct: 61  NNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCA 120

Query: 91  LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG 150
           +VV+DI+  ++ D  K W+ +L    +  +  +LV NK D +    V   E +  A++  
Sbjct: 121 IVVFDISNSNTLDRAKTWVNQLKISSNYII--ILVANKIDKNK-FQVDILEVQKYAQDNN 177

Query: 151 LFFMETSALDSTNVEAAFEVVIREIYSNI 179
           L F++TSA   TN++  F ++  EIY NI
Sbjct: 178 LLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  250 bits (641), Expect = 2e-85
 Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 2/176 (1%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           G ++ +FK++L+G+S VGKS L   F   + DS  +     +   + + +D +EV   ++
Sbjct: 18  GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77

Query: 69  DTAGQERFRAV-TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVG 126
           D   Q            +     L+V+ +T R SF  V   L  L        +  +LVG
Sbjct: 78  DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 137

Query: 127 NKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
           NK DL   R+VS EEG+ LA       +ETSA    N    FE  +R+I     R 
Sbjct: 138 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  245 bits (629), Expect = 5e-84
 Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 2/164 (1%)

Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           +FK++L+G+S VGKS L   F   + D   +     +   + + +D +EV   ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 74  ERFRAV-TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDL 131
                       +     L+V+ +T R SF  V   L  L        +  +LVGNK DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
              R+VS EEG+ LA       +ETSA    N    FE  +R+I
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  243 bits (621), Expect = 7e-83
 Identities = 76/166 (45%), Positives = 100/166 (60%), Gaps = 3/166 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K+VL+G++AVGKS+++ RF  N+F  N + TIG  F TQ V I+   VK +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCD---L 131
           RF ++   YYR A  ALVVYD+T+  SF   + W++EL       +   LVGNK D    
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177
              R V+ EEG+ LAEE+GL F ETSA    NV   F  +  +I  
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  234 bits (599), Expect = 2e-79
 Identities = 63/164 (38%), Positives = 95/164 (57%), Gaps = 2/164 (1%)

Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++++G   VGKS L  +F  +EF  + + T    ++ +VV +DG+EV+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLD 132
           E + A+   Y+R   G L V+ IT   SF +   + E+ L    D  V  +LVGNK DL+
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
             R VS EE K+ A++  + ++ETSA    NV+  F  ++REI 
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  234 bits (600), Expect = 3e-79
 Identities = 65/177 (36%), Positives = 97/177 (54%), Gaps = 2/177 (1%)

Query: 1   MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG 60
           +     G      L K++++G   VGKS L  +F  +EF  + + T    ++ +VV +DG
Sbjct: 5   ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDG 63

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTA 119
           +EV+  I DTAGQE + A+   Y+R   G L V+ IT   SF +   + E+ L    D  
Sbjct: 64  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 123

Query: 120 VGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
           V  +LVGNK DL+  R VS EE K+ AE+  + ++ETSA    NV+  F  ++REI 
Sbjct: 124 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 180

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  235 bits (601), Expect = 3e-79
 Identities = 67/191 (35%), Positives = 101/191 (52%), Gaps = 2/191 (1%)

Query: 1   MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG 60
           M   +  G     L K++++G   VGKS L  +F  +EF  + + T    ++ +VV +DG
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDG 59

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTA 119
           +EV+  I DTAGQE + A+   Y+R   G L V+ IT   SF +   + E+ L    D  
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119

Query: 120 VGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
           V  +LVGNK DL+  R VS EE K+ AE+  + ++ETSA    NV+  F  ++REI +  
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179

Query: 180 SRKVLNSDAYK 190
                  +  K
Sbjct: 180 MEDSKEKNGKK 190

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  231 bits (592), Expect = 2e-78
 Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 4/166 (2%)

Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L+++VL+GD  VGK++L S FA  +   +    +G +   + + +DG++    + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQE-RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 74  ERFRAVTS--AYYRGAVGALVVYDITRRSSFDSVKRWLEELT-THCDTAVGRMLVGNKCD 130
           E+     S  +  +G    ++VY I  R SF+S      +L  TH    V  +LVGNK D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 131 LDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
           L   R+VS EEG++ A      F+ETSA    NV   FE V+R++ 
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLR 168

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  228 bits (583), Expect = 5e-77
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           ++K++L+G   VGKS L   F   E    +    G  +   +V +DG+E    ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTYDRSIV-VDGEEASLMVYDIWEQ 59

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLD 132
           +  R +           ++VY +T + SF+       +L     T  V  +LVGNK DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             R+VS +EG++ A      F+ETSA    NV+A FE V+R+I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  227 bits (580), Expect = 3e-76
 Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 2/164 (1%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
              K+V++G   VGK++L  +F   EF      T+   +   V  +   E    + DTAG
Sbjct: 23  RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVT-LGKDEFHLHLVDTAG 81

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT-THCDTAVGRMLVGNKCDL 131
           Q+ +  +  ++  G  G ++VY +T   SF  ++   ++L   H  T V  +LVGNK DL
Sbjct: 82  QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
              R+V   EGK LAE  G  FME+SA ++   +  F  VI+EI
Sbjct: 142 SPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  224 bits (574), Expect = 4e-75
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 7/181 (3%)

Query: 10  GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKA-TIGVEFQTQVVDIDGKE---VKA 65
                +++VLIG+  VGKS L + FA      +S    +G +   + + +DG+    +  
Sbjct: 33  SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92

Query: 66  QIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRML 124
            +W+  G+  +  +     +     L+VY IT R+SF+       +L     T  +  +L
Sbjct: 93  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150

Query: 125 VGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 184
           VGNK DL   R+VS  EG++ A      F+ETSA    NV+  FE ++R++      K  
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 210

Query: 185 N 185
           N
Sbjct: 211 N 211

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  223 bits (571), Expect = 5e-75
 Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
              K+V++G   VGKS L  +F ++ F S+   TI   +      +DG   +  I DTAG
Sbjct: 8   ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICS-VDGIPARLDILDTAG 66

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDL 131
           QE F A+   Y R   G L+V+ I  R SF+ V +   ++    D      +LVGNK DL
Sbjct: 67  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +S R V   E  +      + + E SA    NV+ AFE ++R +
Sbjct: 127 ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  220 bits (563), Expect = 9e-74
 Identities = 35/175 (20%), Positives = 78/175 (44%), Gaps = 11/175 (6%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFD--SNSKATIGVEFQTQVVDIDGK---EVKAQIWD 69
            K++++G++  GK+ LL +  + +        AT+G++ +   + I  K   ++   +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 70  TAGQERFRAVTSAYYRGAVGALVVYDITRR-SSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
            AG+E F +    +       L VYD+++  +  D++K WL  +     ++   +LVG  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTH 121

Query: 129 CDLDSIRD---VSTEEGKSLAEEEGL-FFMETSALDSTNVEAAFEVVIREIYSNI 179
            D+   +      ++  K L  + G     +   +++T    A   + + I +  
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  217 bits (554), Expect = 3e-72
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 7/174 (4%)

Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKE---VKAQIWD 69
            +++VLIG+  VGKS L + FA      +S    +G +   + + +DG+    +   +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

Query: 70  TAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNK 128
             G+  +  +     +     L+VY IT R+SF+       +L     T  +  +LVGNK
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
            DL   R+VS  EG++ A      F+ETSA    NV+  FE ++R++      K
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  215 bits (549), Expect = 8e-72
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNK DL +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V + + + LA   G+ ++ETSA     VE AF  ++REI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  213 bits (546), Expect = 3e-71
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
              KI ++G  +VGKS+L  +F   +F  +   TI   F   +  ++G+E   Q+ DTAG
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLIT-VNGQEYHLQLVDTAG 63

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDL 131
           Q+ +      Y     G ++VY +T   SF+ +K    +L        +  MLVGNK DL
Sbjct: 64  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
              R +S EEGK+LAE     F+E+SA ++      F  +I E 
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  213 bits (544), Expect = 4e-71
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 3/163 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +++ + G   VGKS+L+ RF +  F  +   T+   ++  +   D      QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVIS-CDKSICTLQITDTTGSH 62

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA--VGRMLVGNKCDLD 132
           +F A+           ++VY IT R S + +K   E++         +  MLVGNKCD  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             R+V + E ++LA      FMETSA  + NV+  F+ ++   
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  211 bits (540), Expect = 2e-70
 Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
             +K+V++GD  VGKS L  +F +  F  +   TI   +      ID +     + DTAG
Sbjct: 17  PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTE-IDNQWAILDVLDTAG 75

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDL 131
           QE F A+   Y R   G L+VY +T ++SF+ V R+ + +    D      +LV NK DL
Sbjct: 76  QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFEVVIREI 175
             +R V+ ++GK +A +  + ++ETSA D   NV+  F  ++R I
Sbjct: 136 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  211 bits (540), Expect = 3e-70
 Identities = 63/162 (38%), Positives = 89/162 (54%), Gaps = 3/162 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 80

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF  +  + E++    D+  V  +LVGNKCDL +
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V T++   LA+  G+ F+ETSA     VE AF  ++REI
Sbjct: 141 -RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  208 bits (532), Expect = 3e-69
 Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 2/162 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F    F      TI  +F  + +++D      +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
           +F ++   Y +   G ++VY +  + SF  +K   +++        V  +LVGNK DL+S
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R+VS+ EG++LAEE G  FMETSA   T V+  F  ++R++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  209 bits (533), Expect = 5e-69
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 4/165 (2%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
             +++V+ G   VGKS+L+ RF +  F      TI   ++  +   D      QI DT G
Sbjct: 7   NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVIS-CDKSVCTLQITDTTG 65

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA--VGRMLVGNKCD 130
             +F A+           ++V+ +T + S + +    + +     +   +  MLVGNKCD
Sbjct: 66  SHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125

Query: 131 LDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
               R+V T E +++A+E    FMETSA  + NV+  F+ ++   
Sbjct: 126 ETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLE 169

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  207 bits (528), Expect = 2e-68
 Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 3/162 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV IDG+     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ +  + E++    D+  V  +LVGNKCDL S
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R V T++ + LA   G+ F+ETSA     V+ AF  ++REI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  205 bits (525), Expect = 6e-68
 Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 6/168 (3%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
                + ++G    GKS L  +F    F S     +   + ++   +D + V  ++ DTA
Sbjct: 19  PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTA 77

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTH---CDTAVGRMLVGNK 128
             +  R     Y   A   LVVY +  R SFDS   +LE L  H      ++  +L+GNK
Sbjct: 78  DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSA-LDSTNVEAAFEVVIREI 175
            D+   R V+  EG +LA   G  F E SA LD  +V+  F   +RE 
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  204 bits (521), Expect = 1e-67
 Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 3/163 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI   ++ QV  +D ++   +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVE-VDCQQCMLEILDTAGTE 62

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
           +F A+   Y +   G  +VY IT +S+F+ ++   E++    DT  V  +LVGNKCDL+ 
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 134 IRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 175
            R V  E+G++LA +     F+E+SA    NV   F  ++R+I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  203 bits (519), Expect = 5e-67
 Identities = 61/172 (35%), Positives = 80/172 (46%), Gaps = 4/172 (2%)

Query: 6   RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA 65
                +    K+ + G + VGKS L+ RF    F      T+   ++ Q   ID + V  
Sbjct: 20  FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSM 78

Query: 66  QIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRML 124
           +I DTAGQE        + R   G ++VYDIT R SF+ V      L        V  +L
Sbjct: 79  EILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLIL 137

Query: 125 VGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSA-LDSTNVEAAFEVVIREI 175
           VGNK DLD  R VSTEEG+ LA E    F E SA     N+   F  + RE+
Sbjct: 138 VGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  201 bits (513), Expect = 3e-62
 Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 12/184 (6%)

Query: 2   GKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVV----- 56
            + +          K+ LIGD   GK++LL +     FD     T G+   T+       
Sbjct: 29  ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88

Query: 57  ---DIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT 113
              D + KE     WD  GQE   A    +   +   +++ D     +  +   WL  + 
Sbjct: 89  LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIE 145

Query: 114 THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173
            +   +   ++V NK D +   ++  ++           F   S  +   VE+  + +  
Sbjct: 146 KYGGKSP-VIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204

Query: 174 EIYS 177
            +  
Sbjct: 205 AVLH 208

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  184 bits (469), Expect = 1e-59
 Identities = 34/165 (20%), Positives = 72/165 (43%), Gaps = 11/165 (6%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K+ ++G+ + GKS L+ R+    +    ++  G  F+ ++V +DG+     I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTY-VQEESPEGGRFKKEIV-VDGQSYLLLIRDEGGPP 78

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLD- 132
             +     +       + V+ +    SF +V  +   L +  + + V  +LVG +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 133 -SIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREI 175
            + R +     + L+ +     + ET A    NVE  F+ V +++
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  178 bits (453), Expect = 4e-57
 Identities = 35/179 (19%), Positives = 78/179 (43%), Gaps = 13/179 (7%)

Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
             ++ ++GD+  GKS+L+ RF    +    + T   ++  + + +DG+     I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGA 64

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR-----MLVGNK 128
              +     +   A   + V+ +   +SF +V R   +L++      G      +   ++
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119

Query: 129 CDLDSIRDVSTEEGKSL-AEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNS 186
               S R V     ++L A+ +   + ET A    NV+  F+ V +++ +   ++ L +
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  169 bits (429), Expect = 2e-53
 Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 6/186 (3%)

Query: 1   MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG 60
           M          +   KIV++GD AVGK+ LL  F++ E  +    T+   F   +     
Sbjct: 10  MNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMK-YKN 68

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTA 119
           +E    +WDTAGQE +  +    Y  +   L+ + +  R+SFD++  +W  E+  + DT 
Sbjct: 69  EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT- 127

Query: 120 VGRMLVGNKCDL--DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREIY 176
              +LVG K DL  D   DV+ +EG  L ++ G   ++E S++    +   FE  +  I+
Sbjct: 128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187

Query: 177 SNISRK 182
           SN    
Sbjct: 188 SNKPVP 193

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  154 bits (391), Expect = 7e-48
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 14/181 (7%)

Query: 7   GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQ 66
           G        K V +GD AVGK+ LL  +  N F ++   T+   F   VV ++G  V   
Sbjct: 1   GSMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLG 59

Query: 67  IWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLV 125
           +WDTAGQE +  +    YRGA   ++ + +  ++S+++V  +W+ EL  +    V  +LV
Sbjct: 60  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIVLV 118

Query: 126 GNKCDL----------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIRE 174
           G K DL               ++T +G+ L +  G   ++E S+    NV+  F+  IR 
Sbjct: 119 GTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRV 178

Query: 175 I 175
           +
Sbjct: 179 V 179

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  152 bits (386), Expect = 1e-46
 Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 12/178 (6%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V +GD AVGK+ +L  +  N+F ++   T+   F   V  +DG+ V   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-VDGQIVNLGLWDTAGQE 68

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
            +  +    YRGA   ++ + +  ++S+++V  +W+ EL       V  +LVG K DL  
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRD 127

Query: 132 ------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREIYSNISRK 182
                 D    +++ +G+ L ++ G   ++E S+    NV+A F+  I+ +     RK
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  151 bits (382), Expect = 4e-46
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 16/173 (9%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K+VL+GD   GK++LL  FA   F  +   T+   +   +  + GK V   IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDTAGQD 93

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
            +  +   +Y  A   L+ +D+T  +SFD++  RW  E+   C   V  ++VG K DL  
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK-VPIIVVGCKTDLRK 152

Query: 132 ----------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
                     + +  V+   G+ +A   G   ++E SA    NV A F+    
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  150 bits (380), Expect = 6e-46
 Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 16/186 (8%)

Query: 2   GKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK 61
           G   RG        K+V++GD A GK+ LL  F++++F      T+  E     +++DGK
Sbjct: 13  GLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGK 71

Query: 62  EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAV 120
           +V+  +WDTAGQE +  +    Y      L+ + I    S +++  +W  E+   C   V
Sbjct: 72  QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-V 130

Query: 121 GRMLVGNKCDL------------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAA 167
             +LVGNK DL                 V +EEG+ +A     F ++E SA     V   
Sbjct: 131 PIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREV 190

Query: 168 FEVVIR 173
           FE+  R
Sbjct: 191 FEMATR 196

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  149 bits (377), Expect = 2e-45
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 16/185 (8%)

Query: 3   KEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE 62
             E          K+V++GD A GK+ LL  F+++EF      T+   +   +  +DGK+
Sbjct: 14  GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIE-VDGKQ 72

Query: 63  VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVG 121
           V+  +WDTAGQE +  +    Y      L+ + +    S +++  +W+ E+   C   V 
Sbjct: 73  VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN-VP 131

Query: 122 RMLVGNKCDL------------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAF 168
            +LV NK DL                 V T++G+++A     + ++E SA     V   F
Sbjct: 132 IILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

Query: 169 EVVIR 173
           E   R
Sbjct: 192 ETATR 196

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  146 bits (370), Expect = 2e-44
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 16/173 (9%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N F      T+  +  +  V +DGK V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
            +  +    Y      L+ + +   +SF++V+ +W  E+  HC      +LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 148

Query: 132 ----------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
                       +  ++  +G ++A+E G   ++E SAL    ++  F+  IR
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  146 bits (369), Expect = 3e-44
 Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 16/186 (8%)

Query: 2   GKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK 61
           G   R GG E    K VL+GD AVGK++L+  +  N + +    T   +  + VV +DG+
Sbjct: 8   GGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGR 66

Query: 62  EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAV 120
            V+ Q+ DTAGQ+ F  +    Y      L+ + +   SSF +V  +W+ E+  HC    
Sbjct: 67  PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK-A 125

Query: 121 GRMLVGNKCDL------------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAA 167
             +LVG + DL               + V  E  K LAEE     ++E SAL   N++  
Sbjct: 126 PIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEV 185

Query: 168 FEVVIR 173
           F+  I 
Sbjct: 186 FDAAIV 191

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  141 bits (356), Expect = 2e-42
 Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 16/178 (8%)

Query: 10  GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWD 69
           G     K V++GD AVGK+ LL  +  N F      T+  +  +  V +DGK V   +WD
Sbjct: 1   GSPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWD 59

Query: 70  TAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNK 128
           TAGQE +  +    Y     +L+ + +   +SF++V+ +W  E+  HC      +LVG K
Sbjct: 60  TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTK 118

Query: 129 CDL------------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
            DL              +  ++  +G ++A+E G   ++E SAL    ++  F+  IR
Sbjct: 119 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  139 bits (353), Expect = 4e-42
 Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 17/181 (9%)

Query: 8   GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQI 67
           G  +    KIV++GDS  GK+ LL  FA++ F  N   T+   +     +ID + ++  +
Sbjct: 1   GSNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSL 59

Query: 68  WDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVG 126
           WDT+G   +  V    Y  +   L+ +DI+R  + DSV  +W  E+   C      +LVG
Sbjct: 60  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN-TKMLLVG 118

Query: 127 NKCDL------------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTN-VEAAFEVVI 172
            K DL                 VS ++G ++A++ G   ++E SAL S N V   F V  
Sbjct: 119 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVAT 178

Query: 173 R 173
            
Sbjct: 179 L 179

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  140 bits (355), Expect = 4e-42
 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 17/188 (9%)

Query: 1   MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG 60
           + +       +    KIV++GDS  GK+ LL  FA++ F  N   T+   +      ID 
Sbjct: 15  VPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFE-IDT 73

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTA 119
           + ++  +WDT+G   +  V    Y  +   L+ +DI+R  + DSV  +W  E+   C   
Sbjct: 74  QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN- 132

Query: 120 VGRMLVGNKCDL------------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTN-VE 165
              +LVG K DL                 VS ++G ++A++ G   ++E SAL S N V 
Sbjct: 133 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVR 192

Query: 166 AAFEVVIR 173
             F V   
Sbjct: 193 DIFHVATL 200

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  139 bits (351), Expect = 2e-41
 Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 17/194 (8%)

Query: 4   EERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEV 63
           + R         K+VL+GD   GK+ +L   A++ +      T+   +   +   + + V
Sbjct: 17  QGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLE-TEEQRV 75

Query: 64  KAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGR 122
           +  +WDT+G   +  V    Y  +   L+ +DI+R  + DS  K+W  E+  +C +    
Sbjct: 76  ELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS-TRV 134

Query: 123 MLVGNKCDL------------DSIRDVSTEEGKSLAEEEGLF-FMETSALDS-TNVEAAF 168
           +L+G K DL                 +S E+G ++A++ G   ++E SA  S  ++ + F
Sbjct: 135 LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 194

Query: 169 EVVIREIYSNISRK 182
                   +  S  
Sbjct: 195 RTASMLCLNKPSPL 208

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  138 bits (349), Expect = 2e-41
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 16/186 (8%)

Query: 2   GKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK 61
           G+     G    + K V++GD AVGK+ LL  +A + F      T+  +     V + GK
Sbjct: 6   GRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGK 64

Query: 62  EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAV 120
           +    ++DTAGQE +  +    Y      L+ + +   +SF +VK  W+ EL  +    V
Sbjct: 65  QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN-V 123

Query: 121 GRMLVGNKCDL------------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAA 167
             +L+G + DL               + +  E+G+ LA+E G   ++E SAL    ++  
Sbjct: 124 PFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 183

Query: 168 FEVVIR 173
           F+  I 
Sbjct: 184 FDEAII 189

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  118 bits (296), Expect = 8e-33
 Identities = 43/220 (19%), Positives = 72/220 (32%), Gaps = 66/220 (30%)

Query: 21  GDSAVGKSNLLSRFARNEFDS---NSKATIG-VEFQTQVVDID--------------GKE 62
           G   +GKS L +RF R   D    +  + +   +F  +VV+ D                E
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 63  VKAQIW-------DTAGQERFRAVTSAYYRGAV--------------------------- 88
            K  I        D   Q         Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 89  ----------GALVVYDITR--RSSFDSVKRWLEELTTHCDTAVGRM-LVGNKCDLDSIR 135
                     G L+  D++R    +FD   +++  L          + +V  KCD    R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 136 DVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            +      +L+ ++ L  +ETSA  + NV+ AF  +++ I
Sbjct: 215 YIRDAHTFALS-KKNLQVVETSARSNVNVDLAFSTLVQLI 253

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  105 bits (262), Expect = 4e-27
 Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 18/188 (9%)

Query: 1   MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG 60
               E      + L K V++GD AVGK+ LL  +  N F      T+  +  +  V +DG
Sbjct: 142 KKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDG 200

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DT 118
           K V   +WDTAG E +  +    Y      L+ + +   +SF  V+ +W  E+  HC +T
Sbjct: 201 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT 260

Query: 119 AVGRMLVGNKCDL----DSIRD--------VSTEEGKSLAEEEGLF-FMETSALDSTNVE 165
            +  +LVG K DL    D+I          ++  +G ++A+E G   ++E SAL    ++
Sbjct: 261 PI--ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 318

Query: 166 AAFEVVIR 173
             F+  IR
Sbjct: 319 TVFDEAIR 326

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 85.2 bits (211), Expect = 8e-21
 Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 17/187 (9%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNE----------FDSNSKATIGVEFQT-QVVDIDG 60
           E  FKIV  G    GK+  L                   +  + T+  +F    + ++ G
Sbjct: 12  EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKG 71

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRW--LEELTTHCDT 118
            + +  ++   GQ  + A      RG  G + V D        + +    + E       
Sbjct: 72  FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL 131

Query: 119 AVGR--MLVG-NKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            +    +++  NK DL     V       +  E     +E  A +   V    + V R +
Sbjct: 132 TLDDVPIVIQVNKRDLPDALPVE-MVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLV 190

Query: 176 YSNISRK 182
            + ++  
Sbjct: 191 LARVAGG 197

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 66.8 bits (164), Expect = 5e-14
 Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 20/174 (11%)

Query: 15  FKIVLIG-DSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
            ++ L+G   + GK+  ++  A  +F+ +   T+G  F  + +      V  ++WD  GQ
Sbjct: 23  MELTLVGLQYS-GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQ 77

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLD 132
            RFR++   Y RG    + + D   +   ++ K  L  L          +LV GNK DL 
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137

Query: 133 SIRDVSTEEGKSLAEEEGL--------FFMETSALDSTNVEAAFEVVIREIYSN 178
               +  +E   L E+  L             S  +  N++   + +I+   S 
Sbjct: 138 GA--LDEKE---LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 64.6 bits (157), Expect = 4e-13
 Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 24/179 (13%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIG--VEFQTQVVDIDGKEVKAQIWDTAGQ 73
           +I+L+G    GKS++      ++   N    +    +     +      V  QIWD  GQ
Sbjct: 22  RILLMGLRRSGKSSIQKVVF-HKMSPNETLFLESTNKIYKDDISNSS-FVNFQIWDFPGQ 79

Query: 74  ERFRAVTS---AYYRGAVGALVVYDITRRS--SFDSVKRWLEELTTHCDTAVGRMLV-GN 127
             F   T      +RG    + V D       +   +   + +             V  +
Sbjct: 80  MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN--FEVFIH 137

Query: 128 KCDL-------DSIRDVSTEEGKSLA----EEEGLFFMETSALDSTNVEAAFEVVIREI 175
           K D        ++ RD+       LA    E+  L F  TS  D + +  AF  V++++
Sbjct: 138 KVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS-IFEAFSKVVQKL 195

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 63.8 bits (156), Expect = 7e-13
 Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 19/177 (10%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K++++G    GK+ +L +F+ NE    S  TIG     + + I+    +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQE 71

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
             R+  + YY      +VV D T R      +  L ++  H D     +L+  NK D+  
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131

Query: 134 IRDVSTEEGKSLAEEEGL--------FFMETSALDSTNVEAAFEVVIREIYSNISRK 182
              ++  E   +++   L              AL    +    E ++  +   +   
Sbjct: 132 --CMTVAE---ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLEHH 183

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 63.4 bits (155), Expect = 7e-13
 Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 9/168 (5%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G    GK+ +L R    E  +    TIG  F  + +    K +K  +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG--FNVETLSY--KNLKLNVWDLGGQT 73

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLD- 132
             R     YY      + V D T +    +  + L  +    +     +LV  NK D   
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133

Query: 133 --SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
             S  +VS E      ++     + +SA+    +    + +I  I   
Sbjct: 134 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 65.4 bits (159), Expect = 8e-13
 Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 25/185 (13%)

Query: 16  KIVLIGDSAVGKSNLLS----RFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           K++L+G S  GKS++ S     ++  +      ATI VE            +   +WD  
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSH---LRFLGNMTLNLWDCG 60

Query: 72  GQERFRAVT-----SAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRML-- 124
           GQ+ F            ++     + V+D+        ++ + + L      +    +  
Sbjct: 61  GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV 120

Query: 125 VGNKCDL--DSIRDVSTEEGKSLAEEE-------GLFFMETSALDSTNVEAAFEVVIREI 175
           + +K DL     R+   +       E         L    TS  D + +  A+  ++  +
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDES-LYKAWSQIVCSL 179

Query: 176 YSNIS 180
             N+S
Sbjct: 180 IPNMS 184

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 63.0 bits (154), Expect = 8e-13
 Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 19/170 (11%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G    GK+ +L R    E  +    TIG  F  + V    K +K Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTY--KNLKFQVWDLGGLT 62

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
             R     YY      + V D   R      K  L  +    +     ++V  NK D++ 
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122

Query: 134 IRDVSTEEGKSLAEEEGL--------FFMETSALDSTNVEAAFEVVIREI 175
              +++ E   +A   GL           +TSA   T ++ A E ++  +
Sbjct: 123 --AMTSSE---MANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 21/171 (12%)

Query: 15  FKIVLIG-DSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
            +++++G D+A GK+++L R    +  +    T+G     + +    K +  ++WD  GQ
Sbjct: 23  IRVLMLGLDNA-GKTSILYRLHLGDVVTTV-PTVG--VNLETLQY--KNISFEVWDLGGQ 76

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLD 132
              R     Y+      + V D T R      K  L  L    +     +L+  NK DL 
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136

Query: 133 SIRDVSTEEGKSLAEEEGL--------FFMETSALDSTNVEAAFEVVIREI 175
                S  E   +AE+ G+          +++S+     +    + ++  +
Sbjct: 137 D--AASEAE---IAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 9/169 (5%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +F   + D+ S  T+G  F  + ++   +  K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLG--FNIKTLEH--RGFKLNIWDVGGQK 73

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLD- 132
             R+    Y+    G + V D   R      +R L+ L      A   +L+  NK DL  
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133

Query: 133 --SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
             S   +                   SA+   ++    + ++ +I S +
Sbjct: 134 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 61.2 bits (149), Expect = 6e-12
 Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 19/170 (11%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    E  +    TIG  F  + V+   K +   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNICFTVWDVGGQD 84

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
           + R +   Y++   G + V D   R         L+++    +     +LV  NK D+ +
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144

Query: 134 IRDVSTEEGKSLAEEEGL--------FFMETSALDSTNVEAAFEVVIREI 175
              +   E   L ++ GL        +   T A   T +    + +  E+
Sbjct: 145 --AMPVSE---LTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 60.7 bits (148), Expect = 8e-12
 Identities = 34/172 (19%), Positives = 70/172 (40%), Gaps = 13/172 (7%)

Query: 15  FKIVLIG-DSAVGKSNLLSRFARNEFDSNSKA-TIGVEFQTQVVDIDGKEVKAQIWDTAG 72
             ++ +G D++ GK+ ++++   +   S +   TIG  F  +        +   ++D +G
Sbjct: 22  VHVLCLGLDNS-GKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS--SSLSFTVFDMSG 76

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR--MLV-GNKC 129
           Q R+R +   YY+     + V D + R      K  L+ L  H D    R  +L   NK 
Sbjct: 77  QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136

Query: 130 DLD---SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           DL    +   VS        +++      + A+    ++   + +  +I + 
Sbjct: 137 DLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 19/172 (11%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           +I+++G  A GK+ +L +    E  +    TIG  F  + V+   K +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVGGQDK 56

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDSI 134
            R +   Y++   G + V D   R   +  +  L  +    +     +LV  NK DL + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN- 115

Query: 135 RDVSTEEGKSLAEEEGL--------FFMETSALDSTNVEAAFEVVIREIYSN 178
             ++  E   + ++ GL        +   T A     +    + +  ++ + 
Sbjct: 116 -AMNAAE---ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 21/171 (12%)

Query: 15  FKIVLIG-DSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
            K++++G D+A GK+ +L +F+ NE    S  TIG     + + I+    +  +WD  GQ
Sbjct: 22  HKVIIVGLDNA-GKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQ 75

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLD 132
           E  R+  + YY      +VV D T R      +  L ++  H D     +L+  NK D+ 
Sbjct: 76  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135

Query: 133 SIRDVSTEEGKSLAEEEGL--------FFMETSALDSTNVEAAFEVVIREI 175
               ++  E   +++   L              AL    +    E ++  +
Sbjct: 136 E--CMTVAE---ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 13/178 (7%)

Query: 6   RGGGGEEYLFKIVLIG-DSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVK 64
           +    +E   +I+L+G D+A GK+ LL + A  +    +  T G  F  + V   G   K
Sbjct: 10  KSAPDQEV--RILLLGLDNA-GKTTLLKQLASEDISHIT-PTQG--FNIKSVQSQG--FK 61

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRML 124
             +WD  GQ + R    +Y+      + V D   R  F+   + L EL      +   +L
Sbjct: 62  LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL 121

Query: 125 V-GNKCDLD---SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
           +  NK DL       +++         +        SAL    V+     V + + + 
Sbjct: 122 IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 55.3 bits (134), Expect = 7e-10
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 16  KIVLIG-DSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           K++ +G D+A GK+ LL     +   +    T      ++ + I    +K   +D  G  
Sbjct: 25  KLLFLGLDNA-GKTTLLHMLKNDRLATLQ-PTWH--PTSEELAIGN--IKFTTFDLGGHI 78

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
           + R +   Y+    G + + D      FD  +  L+ L    +      ++ GNK D 
Sbjct: 79  QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDA 136

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 16  KIVLIG-DSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           K+V +G D+A GK+ LL     +    +   T+     ++ + I G  +    +D  G  
Sbjct: 27  KLVFLGLDNA-GKTTLLHMLKDDRLGQHV-PTLH--PTSEELTIAG--MTFTTFDLGGHI 80

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
           + R V   Y     G + + D          K  L+ L T    A   +L+ GNK D 
Sbjct: 81  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 15/133 (11%)

Query: 8   GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQI 67
           GGG  Y   I++ G    GK++LL+    +     +  +        +   D       +
Sbjct: 42  GGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQE-----PLSAADYDGSGVTL 95

Query: 68  WDTAGQERFRAVTSAYYRGAVGAL--VVYDI---TRRSSFDSVKRWLEELTTHCDTAVGR 122
            D  G  + R   S Y +     +  +++ +          +   +L ++ +  +++   
Sbjct: 96  VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN 155

Query: 123 ----MLVGNKCDL 131
               ++  NK +L
Sbjct: 156 GIDILIACNKSEL 168

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 18/124 (14%), Positives = 45/124 (36%), Gaps = 15/124 (12%)

Query: 17  IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF 76
           I++ G    GK++LL+    +        T+    Q  +   D       + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRP----TVV--SQEPLSAADYDGSGVTLVDFPGHVKL 68

Query: 77  RAVTSAYYRGAVGAL--VVYDI---TRRSSFDSVKRWLEELTTHCDTAVGR----MLVGN 127
           R   S Y +     +  +++ +          +   +L ++ +  +++       ++  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 128 KCDL 131
           K +L
Sbjct: 129 KSEL 132

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 35/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +   +I+++G  A GK+ +L +    E  +    TIG  F  + V+   K +   +WD  
Sbjct: 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVG 217

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCD 130
           GQ++ R +   Y++   G + V D   R   +  +  L  +    +     +LV  NK D
Sbjct: 218 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 277

Query: 131 LDSIRDVSTEEGKSLAEEEGL--------FFMETSALDSTNVEAAFEVVIREI 175
           L +   ++  E   + ++ GL        +   T A     +    + +  ++
Sbjct: 278 LPN--AMNAAE---ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 48.9 bits (116), Expect = 3e-07
 Identities = 26/180 (14%), Positives = 59/180 (32%), Gaps = 20/180 (11%)

Query: 17  IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF 76
           ++L+G    GKS++      +         +       +       +   + +  GQ  +
Sbjct: 2   VLLMGVRRCGKSSICKVVF-HNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNY 59

Query: 77  RAVT---SAYYRGAVGALVVYDITRRSSFDSVK--RWLEELTTHCDTAVGRMLVGNKCDL 131
              +      ++     + V D               +E       +    +L+ +K D 
Sbjct: 60  FEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLI-HKVDG 118

Query: 132 -------DSIRDVSTEEGKSLAEEEG----LFFMETSALDSTNVEAAFEVVIREIYSNIS 180
                  D+ RD+    G+ L E       + F  TS  D + +  AF  +++++   +S
Sbjct: 119 LSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHS-IYEAFSRIVQKLIPELS 177

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 7/121 (5%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
            ++ +G    GK+ L  R    ++  +++ +I           + +     + D  G E 
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAI-YKVNNNRGNSLTLIDLPGHES 66

Query: 76  FRA-VTSAYYRGAVGALVVYDIT-RRSSFDSVKRWLEELTTHCDTAVGR--MLV-GNKCD 130
            R  +   +   A   + V D    +     V  +L ++            +L+  NK D
Sbjct: 67  LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQD 126

Query: 131 L 131
           +
Sbjct: 127 I 127

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 18/152 (11%)

Query: 4   EERGGGGEEYLFKIVLIGDSAVGKSNLL-SRFARNEFDSNSKATIGVEFQTQVVDIDGKE 62
             +    +     ++++G   VGKS+ + S         +     G+        + G  
Sbjct: 26  FGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFT 85

Query: 63  VKAQIWDTAG-----------QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE 111
           +   I DT G            E  +          +  +   D+      D  K+ +  
Sbjct: 86  IN--IIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELD--KQVVIA 141

Query: 112 LTTHCDTAVGR--MLVGNKCDLDSIRDVSTEE 141
           +T      +    +LV          ++S E 
Sbjct: 142 ITQTFGKEIWCKTLLVLTHAQFSPPDELSYET 173

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 43/243 (17%), Positives = 83/243 (34%), Gaps = 51/243 (20%)

Query: 11  EEYLFKIVLIG---DSAVGKSNLLSRFARNEFDS-NSKATIGVE-FQTQVVDIDGKEVKA 65
           ++   K +L     D  +   + +S      F +  SK    V+ F  +V+ I+ K + +
Sbjct: 39  QDMP-KSILSKEEIDHIIMSKDAVSG-TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 66  QIWDTAGQERFRAVTSAYYR----GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAV- 120
            I     Q           R            Y+++R   +  +++ L EL    +  + 
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 121 GRML-VGNKCDL--DSIRDVSTEE-----------GKSLAEEEGLFFME----------T 156
           G +L  G K  +  D       +                + E  L  ++          T
Sbjct: 157 G-VLGSG-KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 157 SALD-STNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG-SMMD 214
           S  D S+N++     +  E+     R++L S  Y+  L      LV     ++K  +  +
Sbjct: 215 SRSDHSSNIKLRIHSIQAEL-----RRLLKSKPYENCL------LVLLNVQNAKAWNAFN 263

Query: 215 FSC 217
            SC
Sbjct: 264 LSC 266

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 18/177 (10%)

Query: 11  EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDT 70
           +  +  +V+ G   VGKS LL      + +  S             +        QI DT
Sbjct: 164 DLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRY--QIIDT 221

Query: 71  AG------QER----FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAV 120
            G       ER     +A+ +  Y G +  + ++D +       ++  +           
Sbjct: 222 PGLLDRPISERNEIEKQAILALRYLGNL-IIYIFDPS-EHCGFPLEEQIHLFEEVHGEFK 279

Query: 121 GR--MLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
               ++V NK D+    ++  +  +   +E+GL  ++ SAL  T ++   E +I+ +
Sbjct: 280 DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTL 334

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 38.4 bits (89), Expect = 8e-04
 Identities = 19/142 (13%), Positives = 38/142 (26%), Gaps = 22/142 (15%)

Query: 16  KIVLIGDSAVGKS---NLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
            I+++G   VGKS   N +          +   + G           G  +   I DT G
Sbjct: 41  TILVMGKGGVGKSSTVNSI--IGERVVSISPFQSEGPRPVMVSRSRAGFTLN--IIDTPG 96

Query: 73  -----------QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG 121
                          ++         +  +   D  R  + D  K   + +T      + 
Sbjct: 97  LIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLD--KLVAKAITDSFGKGIW 154

Query: 122 R--MLVGNKCDLDSIRDVSTEE 141
              ++            +  +E
Sbjct: 155 NKAIVALTHAQFSPPDGLPYDE 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.98
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.98
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.98
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.98
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.98
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.98
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.98
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.98
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.98
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.97
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.97
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.97
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.97
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.97
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.97
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.97
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.97
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.97
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.97
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.97
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.97
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.97
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.97
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.97
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.97
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.97
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.97
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.97
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.97
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.97
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.97
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.97
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.97
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.97
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.97
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.97
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.97
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.97
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.97
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.97
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.97
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.97
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.96
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.96
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.96
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.96
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.96
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.96
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.96
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.96
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.96
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.96
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.96
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.96
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.96
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.96
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.96
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.96
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.96
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.96
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.96
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.96
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.96
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.96
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.95
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.95
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.95
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.95
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.95
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.94
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.94
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.94
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.94
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.94
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.94
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.94
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.94
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.94
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.94
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.94
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.93
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.93
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.93
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.93
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.93
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.88
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.93
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.92
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.92
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.92
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.91
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.91
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.91
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.91
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.9
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.9
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.9
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.89
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.89
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.89
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.89
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.88
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.88
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.87
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.87
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.86
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.86
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.86
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.85
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.85
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.85
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.85
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.84
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.84
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.84
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.84
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.84
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.83
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.83
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.83
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.83
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.82
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.82
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.82
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.82
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.82
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.82
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.82
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.82
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.82
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.82
1g6h_A	257	High-affinity branched-chain amino acid transport	99.82
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.81
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.81
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.81
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.81
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.81
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.81
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.81
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.8
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.8
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.79
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.79
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.79
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.79
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.78
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.78
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.78
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.78
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.78
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.77
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.77
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.77
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.77
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.77
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.77
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.77
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.77
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.77
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.76
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.75
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.75
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.75
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.75
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.75
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.75
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.74
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.74
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.74
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.73
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.73
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.73
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.72
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.72
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.72
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.71
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.71
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.71
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.71
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.71
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.71
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.7
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.7
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.7
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.7
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.69
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.69
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.69
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.68
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.68
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.68
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.67
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.66
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.66
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.66
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.66
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.66
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.66
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.66
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.65
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.65
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.65
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.64
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.63
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.63
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.63
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.63
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.63
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.62
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.61
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.6
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.6
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.59
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.59
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.59
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.59
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.58
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.58
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.57
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.57
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.57
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.54
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.54
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.53
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.53
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.53
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.5
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.5
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.5
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.49
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.49
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.48
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.47
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.45
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.45
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.43
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.43
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.43
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.42
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.41
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.41
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.4
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.38
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.38
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.35
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.35
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.35
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.28
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.25
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.24
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.19
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.16
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.15
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.14
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.12
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.07
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.03
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.03
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.02
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.01
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.98
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.96
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.94
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.92
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.91
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.89
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.84
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.8
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.79
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.77
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.77
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.75
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.73
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.68
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.67
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.66
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.65
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.6
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.55
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.51
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.5
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.49
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.48
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.45
2og2_A	359	Putative signal recognition particle receptor; nuc	98.4
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.39
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.39
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.36
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.35
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.33
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.31
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.3
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.27
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.25
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.23
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.2
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.18
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.15
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.13
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.12
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.1
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.09
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.07
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.06
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.06
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.05
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	98.04
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.01
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.95
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.95
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.95
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.92
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.9
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.89
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.89
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.88
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.87
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.82
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.8
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.8
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.77
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.76
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.76
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.73
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.72
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.71
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.69
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.67
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.65
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.62
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.61
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.61
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.61
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.6
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.6
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.6
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.59
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.59
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.59
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.59
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.58
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.57
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.57
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.56
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.54
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.44
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.44
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.42
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.41
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.41
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.4
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.39
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.37
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.37
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.36
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.36
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.34
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.34
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.34
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.33
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.33
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.32
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.32
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.28
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.28
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.28
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.27
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.26
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.25
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.24
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.24
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.24
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.21
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.21
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.2
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.19
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.17
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.17
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.16
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.15
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.12
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.12
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.11
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.08
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.07
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.05
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.04
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.02
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.02
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.01
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.0
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.99
1via_A	175	Shikimate kinase; structural genomics, transferase	96.98
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.97
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.95
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.94
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.94
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.92
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.91
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.9
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.9
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.9
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.88
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.88
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.87
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.87
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.86
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.84
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.83
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.83
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.82
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.82
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.81
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.81
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.81
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.8
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.79
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.79
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.79
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.79
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.78
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.78
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.77
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.77
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.77
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.77
2xxa_A	433	Signal recognition particle protein; protein trans	96.76
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.76
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.76
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.74
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.73
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.72
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.71
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.68
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.68
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.67
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.67
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.66
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.66
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.65
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.62
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.62
3co5_A	143	Putative two-component system transcriptional RES	96.62
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.59
3bos_A	242	Putative DNA replication factor; P-loop containing	96.58
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.57
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.57
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.55
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.55
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.54
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.52
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.5
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.5
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.49
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.48
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.47
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.42
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.41
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.4
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.37
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.36
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.36
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.36
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.35
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.34
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.32
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.29
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.27
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.27
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.27
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.27
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.25
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.23
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.2
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.19
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.19
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.18
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.18
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.13
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.13
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.11
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.09
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.06

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=3.4e-35  Score=224.65  Aligned_cols=168  Identities=39%  Similarity=0.685  Sum_probs=145.3

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      +|...+||+|+|.+|||||||++++....|+..+.+|++.+.....+..++..+.+.+|||+|++++...+..+++.+++
T Consensus         9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~   88 (216)
T 4dkx_A            9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA   88 (216)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred             CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence            34557999999999999999999999999999999999988888888889999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      +++|||.++..+|+.+..|+..+......++|+++||||+|+...+.+..+++..++...++.|+++||+++.|++++|+
T Consensus        89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~  168 (216)
T 4dkx_A           89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR  168 (216)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence            99999999999999999999998877777899999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027703          170 VVIREIYS  177 (220)
Q Consensus       170 ~l~~~~~~  177 (220)
                      .|.+.+..
T Consensus       169 ~i~~~i~~  176 (216)
T 4dkx_A          169 RVAAALPG  176 (216)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHh
Confidence            99887653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=1.2e-30  Score=196.13  Aligned_cols=173  Identities=49%  Similarity=0.823  Sum_probs=157.8

Q ss_pred             CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703            6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR   85 (220)
Q Consensus         6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~   85 (220)
                      .++...+..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++
T Consensus         8 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   87 (196)
T 3tkl_A            8 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR   87 (196)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHT
T ss_pred             hcCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHh
Confidence            34556678899999999999999999999999999999999888888888888988899999999999999889999999


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE  165 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (220)
                      .+|++++|+|++++.+++.+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus        88 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  167 (196)
T 3tkl_A           88 GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE  167 (196)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHH
T ss_pred             hCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence            99999999999999999999999999887777778999999999998888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027703          166 AAFEVVIREIYSN  178 (220)
Q Consensus       166 ~l~~~l~~~~~~~  178 (220)
                      ++|++|.+.+.+.
T Consensus       168 ~l~~~l~~~i~~~  180 (196)
T 3tkl_A          168 QSFMTMAAEIKKR  180 (196)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.4e-31  Score=199.51  Aligned_cols=172  Identities=43%  Similarity=0.723  Sum_probs=154.8

Q ss_pred             CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703            7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (220)
Q Consensus         7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   86 (220)
                      +.+..+..+||+++|++|||||||++++.+..+...+.+|.+.+.....+.+++..+.+.+||++|+..+...+..+++.
T Consensus        19 ~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   98 (201)
T 2ew1_A           19 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRS   98 (201)
T ss_dssp             ---CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTT
T ss_pred             CccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhc
Confidence            34556778999999999999999999999999998888898888888888888888999999999999988888899999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      ++++++|||++++.+++.+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        99 ~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  178 (201)
T 2ew1_A           99 ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEK  178 (201)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999999988877666789999999999987778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          167 AFEVVIREIYSN  178 (220)
Q Consensus       167 l~~~l~~~~~~~  178 (220)
                      +|++|.+.+.+.
T Consensus       179 l~~~l~~~i~~~  190 (201)
T 2ew1_A          179 LFLDLACRLISE  190 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999888654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=6.9e-31  Score=198.81  Aligned_cols=171  Identities=47%  Similarity=0.789  Sum_probs=144.9

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      .+..+..+||+++|++|||||||++++.+..+...+.+|.+.+.....+.+++..+.+.+||++|+..+...+..+++.+
T Consensus        23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (201)
T 2hup_A           23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA  102 (201)
T ss_dssp             ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence            34456689999999999999999999999999888888887777777888888889999999999999988899999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVEA  166 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~  166 (220)
                      +++++|+|++++.+++.+..|+..+........|+++++||+|+...+.+..+++..++...++ .++++||+++.|+++
T Consensus       103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  182 (201)
T 2hup_A          103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE  182 (201)
T ss_dssp             SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999999988877666789999999999987778889999999999999 999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          167 AFEVVIREIYSN  178 (220)
Q Consensus       167 l~~~l~~~~~~~  178 (220)
                      +|++|.+.+.+.
T Consensus       183 l~~~l~~~i~~~  194 (201)
T 2hup_A          183 AFLRVATELIMR  194 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.98  E-value=1.8e-30  Score=193.57  Aligned_cols=172  Identities=46%  Similarity=0.776  Sum_probs=155.5

Q ss_pred             CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703            7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (220)
Q Consensus         7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   86 (220)
                      +....+..+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.
T Consensus         3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   82 (186)
T 2bme_A            3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG   82 (186)
T ss_dssp             -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred             cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence            34455778999999999999999999999999998888888888777888888888899999999999988888999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      ++++++|+|++++.++..+..|+..+........|+++++||+|+...+.+...++..++...+++++++||+++.|+++
T Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (186)
T 2bme_A           83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE  162 (186)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence            99999999999999999999999888776666789999999999987778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          167 AFEVVIREIYSN  178 (220)
Q Consensus       167 l~~~l~~~~~~~  178 (220)
                      +|+++.+.+.+.
T Consensus       163 l~~~l~~~~~~~  174 (186)
T 2bme_A          163 AFVQCARKILNK  174 (186)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.98  E-value=4.2e-31  Score=196.63  Aligned_cols=170  Identities=49%  Similarity=0.896  Sum_probs=125.4

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      ..++.+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+++
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (183)
T 2fu5_C            4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   83 (183)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence            45678999999999999999999999999888888888877777788888888999999999999888888889999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      +++|+|++++.++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++++++
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  163 (183)
T 2fu5_C           84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  163 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999888776666789999999999987778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027703          170 VVIREIYSNI  179 (220)
Q Consensus       170 ~l~~~~~~~~  179 (220)
                      +|.+.+.+..
T Consensus       164 ~l~~~i~~~~  173 (183)
T 2fu5_C          164 TLARDIKAKM  173 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887643

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.98  E-value=1.5e-30  Score=192.46  Aligned_cols=170  Identities=49%  Similarity=0.843  Sum_probs=152.4

Q ss_pred             CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703            7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (220)
Q Consensus         7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   86 (220)
                      ++...+..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.
T Consensus         8 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   87 (179)
T 1z0f_A            8 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG   87 (179)
T ss_dssp             ---CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHT
T ss_pred             CccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhcc
Confidence            34556778999999999999999999999999988888888877777778888888999999999999888889999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      ++++++|+|+++..++..+..|+..+........|+++++||+|+...+.+..++++.++...++.++++||+++.|+++
T Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  167 (179)
T 1z0f_A           88 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED  167 (179)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999999988877666789999999999987778888999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          167 AFEVVIREIY  176 (220)
Q Consensus       167 l~~~l~~~~~  176 (220)
                      ++++|.+.+.
T Consensus       168 l~~~l~~~i~  177 (179)
T 1z0f_A          168 AFLEAAKKIY  177 (179)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.98  E-value=2e-30  Score=194.58  Aligned_cols=171  Identities=53%  Similarity=0.877  Sum_probs=151.0

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      +....+.+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   94 (191)
T 2a5j_A           15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA   94 (191)
T ss_dssp             CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence            45567789999999999999999999999999888888888777777888888889999999999998888889999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +++++|+|+++..+++.+..|+..+........|+++++||+|+...+.+..+++..++...++.++++||+++.|++++
T Consensus        95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  174 (191)
T 2a5j_A           95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA  174 (191)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999888776667899999999999877788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          168 FEVVIREIYSN  178 (220)
Q Consensus       168 ~~~l~~~~~~~  178 (220)
                      |++|.+.+.+.
T Consensus       175 ~~~l~~~i~~~  185 (191)
T 2a5j_A          175 FINTAKEIYRK  185 (191)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999888654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.98  E-value=3e-30  Score=193.78  Aligned_cols=171  Identities=58%  Similarity=0.963  Sum_probs=154.3

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      .++.+..+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+.+..+.+.+||++|+..+...+..+++.+
T Consensus        19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   98 (193)
T 2oil_A           19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA   98 (193)
T ss_dssp             -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence            45566789999999999999999999999999988888888777777888888889999999999998888899999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +++++|+|++++.++..+..|+..+........|+++++||+|+...+.+..++++.++...++.++++||+++.|++++
T Consensus        99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  178 (193)
T 2oil_A           99 VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELA  178 (193)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999998887766667899999999999877778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          168 FEVVIREIYSN  178 (220)
Q Consensus       168 ~~~l~~~~~~~  178 (220)
                      +++|.+.+.+.
T Consensus       179 ~~~l~~~i~~~  189 (193)
T 2oil_A          179 FETVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999888654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.98  E-value=3.6e-30  Score=192.75  Aligned_cols=173  Identities=42%  Similarity=0.761  Sum_probs=155.2

Q ss_pred             CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703            6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR   85 (220)
Q Consensus         6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~   85 (220)
                      .+....+..+||+++|++|||||||+++|.+..+...+.++.+.......+..++..+.+.+||++|+..+...+..++.
T Consensus        14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   93 (189)
T 2gf9_A           14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR   93 (189)
T ss_dssp             CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred             CCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence            34556677899999999999999999999999998888888887777777778888899999999999988888899999


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE  165 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (220)
                      .++++++|+|++++.+++.+..|+..+........|+++++||+|+...+.+..+++..++...++.++++||+++.|++
T Consensus        94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  173 (189)
T 2gf9_A           94 GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVK  173 (189)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence            99999999999999999999999988877766678999999999998777788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027703          166 AAFEVVIREIYSN  178 (220)
Q Consensus       166 ~l~~~l~~~~~~~  178 (220)
                      +++++|.+.+.+.
T Consensus       174 ~l~~~l~~~i~~~  186 (189)
T 2gf9_A          174 QVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999888653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.98  E-value=2.7e-30  Score=191.45  Aligned_cols=172  Identities=48%  Similarity=0.774  Sum_probs=151.4

Q ss_pred             CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703            7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (220)
Q Consensus         7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   86 (220)
                      +....++.+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|...+...+..++..
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   81 (181)
T 3tw8_B            2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG   81 (181)
T ss_dssp             ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred             CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence            34566788999999999999999999999999998888998888888888889988999999999999888888999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      ++++++|+|++++.++..+..|+..+.... ...|+++++||+|+...+....+++..++...+++++++||+++.|+++
T Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (181)
T 3tw8_B           82 THGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE  160 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            999999999999999999999988887654 3689999999999988788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027703          167 AFEVVIREIYSNI  179 (220)
Q Consensus       167 l~~~l~~~~~~~~  179 (220)
                      ++++|.+.+.+..
T Consensus       161 l~~~l~~~~~~~~  173 (181)
T 3tw8_B          161 MFNCITELVLRAK  173 (181)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887643

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.98  E-value=5.6e-30  Score=190.00  Aligned_cols=171  Identities=40%  Similarity=0.716  Sum_probs=151.1

Q ss_pred             CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703            6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR   85 (220)
Q Consensus         6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~   85 (220)
                      .....+...+||+++|++|||||||++++.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..+++
T Consensus         4 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   83 (181)
T 2efe_B            4 AAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR   83 (181)
T ss_dssp             ------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHT
T ss_pred             cCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhc
Confidence            34556677899999999999999999999999998888888887777778888888899999999999998888999999


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE  165 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (220)
                      .++++++|+|++++.+++.+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|+.
T Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (181)
T 2efe_B           84 GAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVK  163 (181)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence            99999999999999999999999998887766678999999999998777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          166 AAFEVVIREIY  176 (220)
Q Consensus       166 ~l~~~l~~~~~  176 (220)
                      +++++|.+.+.
T Consensus       164 ~l~~~l~~~~~  174 (181)
T 2efe_B          164 EIFYEIARRLP  174 (181)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.98  E-value=3.9e-30  Score=188.66  Aligned_cols=166  Identities=45%  Similarity=0.729  Sum_probs=150.4

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      .+...+||+++|++|||||||++++.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..++..+++
T Consensus         2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~   81 (170)
T 1r2q_A            2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA   81 (170)
T ss_dssp             CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCE
Confidence            35678999999999999999999999999988888888877777778888888999999999999988889999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      +++|+|++++.++..+..|+..+........|+++++||+|+...+....+++..++...+++++++||+++.|++++++
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  161 (170)
T 1r2q_A           82 AIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999888777666789999999999987777888899999999999999999999999999999


Q ss_pred             HHHHHH
Q 027703          170 VVIREI  175 (220)
Q Consensus       170 ~l~~~~  175 (220)
                      +|.+.+
T Consensus       162 ~i~~~~  167 (170)
T 1r2q_A          162 AIAKKL  167 (170)
T ss_dssp             HHHHTS
T ss_pred             HHHHHH
Confidence            998654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.97  E-value=4.3e-30  Score=194.86  Aligned_cols=169  Identities=51%  Similarity=0.858  Sum_probs=154.8

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      ..+..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+++
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            35678999999999999999999999999998888888888877888888888999999999999888888999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      +++|+|++++.++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999988777666789999999999987778888899999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027703          170 VVIREIYSN  178 (220)
Q Consensus       170 ~l~~~~~~~  178 (220)
                      +|.+.+.+.
T Consensus       164 ~l~~~i~~~  172 (206)
T 2bcg_Y          164 TMARQIKES  172 (206)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.97  E-value=1.2e-29  Score=191.95  Aligned_cols=170  Identities=42%  Similarity=0.764  Sum_probs=154.2

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      ..+..+||+++|++|||||||+++|.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..+++.+++
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            44678999999999999999999999999988888888877777778888888999999999999988888999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      +++|+|++++.++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  163 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999888776666789999999999987778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027703          170 VVIREIYSNI  179 (220)
Q Consensus       170 ~l~~~~~~~~  179 (220)
                      +|.+.+.+..
T Consensus       164 ~l~~~i~~~~  173 (203)
T 1zbd_A          164 RLVDVICEKM  173 (203)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887643

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.97  E-value=8e-30  Score=189.68  Aligned_cols=171  Identities=32%  Similarity=0.476  Sum_probs=150.5

Q ss_pred             CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703            6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR   85 (220)
Q Consensus         6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~   85 (220)
                      .++..+.+.+||+++|++|||||||++++.+..+...+.++.+... ...+..++..+.+.+||++|+..+...+..+++
T Consensus        10 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   88 (183)
T 3kkq_A           10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR   88 (183)
T ss_dssp             ----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH
T ss_pred             cCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHh
Confidence            3345566789999999999999999999999999988888887665 567778888889999999999998888999999


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccC-CCCC
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSAL-DSTN  163 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~  163 (220)
                      .++++++|||++++.+++.+..|+..+... .....|+++++||+|+...+.+..+++..++...+++++++||+ ++.|
T Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~  168 (183)
T 3kkq_A           89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLN  168 (183)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBS
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCC
Confidence            999999999999999999999998887553 34568999999999998888899999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHH
Q 027703          164 VEAAFEVVIREIYS  177 (220)
Q Consensus       164 v~~l~~~l~~~~~~  177 (220)
                      ++++|++|.+.+.+
T Consensus       169 v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          169 VDKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.97  E-value=1.8e-30  Score=190.73  Aligned_cols=166  Identities=41%  Similarity=0.697  Sum_probs=143.3

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      .+..+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            45679999999999999999999999999888888888777777788888889999999999988888888889999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      ++|+|+++..++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|+++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999988877655556899999999999877788889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027703          171 VIREIY  176 (220)
Q Consensus       171 l~~~~~  176 (220)
                      |.+.+.
T Consensus       163 l~~~~~  168 (170)
T 1z08_A          163 LCKRMI  168 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.97  E-value=1.4e-29  Score=185.71  Aligned_cols=165  Identities=40%  Similarity=0.711  Sum_probs=150.1

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      ....+||+++|++|||||||++++.+..+...+.++.+.......+.+.+..+.+.+||++|...+...+..+++.++++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999999888888888777777888888889999999999998888889999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      ++|+|++++.++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|+++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999998888776677899999999999877788888999999999999999999999999999999


Q ss_pred             HHHHH
Q 027703          171 VIREI  175 (220)
Q Consensus       171 l~~~~  175 (220)
                      |.+.+
T Consensus       163 i~~~i  167 (170)
T 1z0j_A          163 ISRRI  167 (170)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            98764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=5.3e-31  Score=197.69  Aligned_cols=171  Identities=43%  Similarity=0.768  Sum_probs=155.7

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      ++..+..+||+++|++|||||||+++|.+..+...+.++.+.......+..++..+.+.+||++|+..+...+..+++.+
T Consensus        17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (191)
T 3dz8_A           17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA   96 (191)
T ss_dssp             TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred             ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence            45567789999999999999999999999999888888887777777887888888999999999998888899999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +++++|+|++++.+++.+..|+..+........|+++++||+|+...+....+++..++...++.++++||+++.|+.++
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  176 (191)
T 3dz8_A           97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA  176 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            99999999999999999999999988876677999999999999887888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          168 FEVVIREIYSN  178 (220)
Q Consensus       168 ~~~l~~~~~~~  178 (220)
                      |++|.+.+.+.
T Consensus       177 ~~~l~~~i~~~  187 (191)
T 3dz8_A          177 FERLVDAICDK  187 (191)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.97  E-value=3e-30  Score=193.82  Aligned_cols=170  Identities=37%  Similarity=0.751  Sum_probs=144.8

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      +++.+..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA   99 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence            45566789999999999999999999999998888888888887788888888889999999999999888889999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-hCCeEEEeccCCCCCHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEA  166 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~  166 (220)
                      +++++|+|+++..+++.+..|+..+........|+++++||+|+...+.+..+++..++.. .++.++++||+++.|+++
T Consensus       100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  179 (192)
T 2il1_A          100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE  179 (192)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence            9999999999999999999998888777666799999999999987778888888888887 478999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          167 AFEVVIREIYS  177 (220)
Q Consensus       167 l~~~l~~~~~~  177 (220)
                      ++++|.+.+.+
T Consensus       180 l~~~l~~~i~~  190 (192)
T 2il1_A          180 IFLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.97  E-value=8.1e-30  Score=188.57  Aligned_cols=168  Identities=42%  Similarity=0.704  Sum_probs=149.8

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      ...+...+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..++..+
T Consensus         8 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   87 (179)
T 2y8e_A            8 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   87 (179)
T ss_dssp             ----CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTC
T ss_pred             ccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence            34455679999999999999999999999999988888888888888888888889999999999998888889999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +++++|+|++++.++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  167 (179)
T 2y8e_A           88 TVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL  167 (179)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999998877665567899999999999877788888999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027703          168 FEVVIREI  175 (220)
Q Consensus       168 ~~~l~~~~  175 (220)
                      +++|.+.+
T Consensus       168 ~~~l~~~~  175 (179)
T 2y8e_A          168 FRRVAAAL  175 (179)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHH
Confidence            99998765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=9e-30  Score=191.18  Aligned_cols=171  Identities=41%  Similarity=0.704  Sum_probs=150.5

Q ss_pred             CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703            6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR   85 (220)
Q Consensus         6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~   85 (220)
                      .+++..+..+||+++|++|||||||+++|.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..+++
T Consensus        15 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   94 (192)
T 2fg5_A           15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYR   94 (192)
T ss_dssp             ------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred             ccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhc
Confidence            35666778899999999999999999999999988888888887777777777888889999999999999888999999


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE  165 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (220)
                      .++++++|+|++++.++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus        95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  174 (192)
T 2fg5_A           95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE  174 (192)
T ss_dssp             TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHH
T ss_pred             cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence            99999999999999999999999998887766678999999999997767788899999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          166 AAFEVVIREIY  176 (220)
Q Consensus       166 ~l~~~l~~~~~  176 (220)
                      +++++|.+.+.
T Consensus       175 ~l~~~l~~~i~  185 (192)
T 2fg5_A          175 ELFQGISRQIP  185 (192)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=1.6e-29  Score=190.91  Aligned_cols=167  Identities=63%  Similarity=1.026  Sum_probs=148.7

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      +..+|++++|++|||||||+++|.+..+...+.++.+.+...+.+.+++..+.+.+||++|+..+...+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            46799999999999999999999999998888888888888889999999999999999999888878888889999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|+|.++..++..+..|+..+........|+++++||.|+...+.+..+++++++.++++.++++|++++.++++++++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999998888887766555568999999999998777888899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027703          172 IREIYSN  178 (220)
Q Consensus       172 ~~~~~~~  178 (220)
                      .+.+.+.
T Consensus       163 ~~~~~~~  169 (199)
T 2f9l_A          163 LTEIYRI  169 (199)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.97  E-value=5.4e-30  Score=193.71  Aligned_cols=170  Identities=49%  Similarity=0.794  Sum_probs=142.3

Q ss_pred             CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703            9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (220)
Q Consensus         9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~   88 (220)
                      ...+..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.++
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            33466899999999999999999999999998888888887777778888888899999999999988888889999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHH
Q 027703           89 GALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF  168 (220)
Q Consensus        89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  168 (220)
                      ++++|+|++++.++..+..|+..+........|+++++||+|+...+.+...++..++...++.++++||+++.|++++|
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  179 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF  179 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999988877666678999999999998777888889999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          169 EVVIREIYSN  178 (220)
Q Consensus       169 ~~l~~~~~~~  178 (220)
                      ++|.+.+.+.
T Consensus       180 ~~l~~~i~~~  189 (200)
T 2o52_A          180 LKCARTILNK  189 (200)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=1.2e-29  Score=190.57  Aligned_cols=166  Identities=64%  Similarity=1.036  Sum_probs=149.8

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      +.+..++++++|++|||||||+++|.+..++..+.+|++.+...+.+.+++..+.+.+||++|...+...+..+++.+++
T Consensus        25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~  104 (191)
T 1oix_A           25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG  104 (191)
T ss_dssp             CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence            45678999999999999999999999999999999999988888999999998999999999998888888888899999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      +++|+|.++..+++.+..|+..+........|+++++||.|+...+.+..+++++++.++++.++|+|++++.++.++++
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~  184 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ  184 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999998999888888777655455688999999999987778889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027703          170 VVIREI  175 (220)
Q Consensus       170 ~l~~~~  175 (220)
                      +|.+.+
T Consensus       185 ~l~~~i  190 (191)
T 1oix_A          185 TILTEI  190 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=2e-29  Score=184.82  Aligned_cols=163  Identities=47%  Similarity=0.724  Sum_probs=147.3

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      +.+||+++|++|||||||++++.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..+++.++++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999999988888888877777788888888999999999999988889999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC---CCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI---RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      |+|++++.++..+..|+..+........|+++++||+|+...   +.+..+++..++...+++++++||+++.|+.++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998887776667899999999998755   66778888899999999999999999999999999


Q ss_pred             HHHHHH
Q 027703          170 VVIREI  175 (220)
Q Consensus       170 ~l~~~~  175 (220)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            987643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.9e-29  Score=186.96  Aligned_cols=170  Identities=46%  Similarity=0.743  Sum_probs=143.7

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   86 (220)
                      .+..+..+||+++|++|||||||++++.+..+. ..+.++.+.+.....+.+++..+.+.+||++|+..+...+..++..
T Consensus         4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   83 (180)
T 2g6b_A            4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD   83 (180)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred             cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence            345577899999999999999999999999885 4566777777777777788888999999999999888888889999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      ++++++|+|++++.+++.+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  163 (180)
T 2g6b_A           84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL  163 (180)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999999888776666789999999999987778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          167 AFEVVIREIYS  177 (220)
Q Consensus       167 l~~~l~~~~~~  177 (220)
                      +++++.+.+.+
T Consensus       164 l~~~l~~~~~~  174 (180)
T 2g6b_A          164 AFTAIAKELKR  174 (180)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.97  E-value=2.4e-29  Score=190.39  Aligned_cols=177  Identities=36%  Similarity=0.529  Sum_probs=148.9

Q ss_pred             CCCCCCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhh
Q 027703            1 MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVT   80 (220)
Q Consensus         1 ~~~~~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~   80 (220)
                      |.......+.+...+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+
T Consensus         1 m~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   79 (206)
T 2bov_A            1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIR   79 (206)
T ss_dssp             ----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred             CCcccccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHH
Confidence            444555556667789999999999999999999999998888887776544 4566778888899999999999888888


Q ss_pred             HHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccC
Q 027703           81 SAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSAL  159 (220)
Q Consensus        81 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (220)
                      ..++..++++++|||+++..++..+..|+..+..... ...|+++++||+|+...+.+..+++..++...+++++++||+
T Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (206)
T 2bov_A           80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK  159 (206)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCC
Confidence            8999999999999999999999999999888776543 568999999999998777888999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027703          160 DSTNVEAAFEVVIREIYSN  178 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~~~~~  178 (220)
                      ++.|+++++++|.+.+.+.
T Consensus       160 ~g~gi~~l~~~l~~~i~~~  178 (206)
T 2bov_A          160 TRANVDKVFFDLMREIRAR  178 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHc
Confidence            9999999999999988763

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.6e-30  Score=196.38  Aligned_cols=168  Identities=61%  Similarity=0.982  Sum_probs=144.4

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      ..+..+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+++
T Consensus         9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (223)
T 3cpj_B            9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG   88 (223)
T ss_dssp             -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred             CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence            34678999999999999999999999999998888888887777888888888999999999999988888999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      +++|||++++.++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus        89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  168 (223)
T 3cpj_B           89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE  168 (223)
T ss_dssp             EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999988776666789999999999987778888899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027703          170 VVIREIYS  177 (220)
Q Consensus       170 ~l~~~~~~  177 (220)
                      +|.+.+.+
T Consensus       169 ~l~~~i~~  176 (223)
T 3cpj_B          169 ELINTIYQ  176 (223)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHH
Confidence            99988865

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.97  E-value=5.9e-30  Score=192.85  Aligned_cols=169  Identities=31%  Similarity=0.385  Sum_probs=141.6

Q ss_pred             CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-hhHHhhcCC
Q 027703            9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-VTSAYYRGA   87 (220)
Q Consensus         9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~   87 (220)
                      .++...+||+++|++|||||||++++.+..+.....++.+.+.....+.+++..+.+.+||++|+..+.. .+..+++.+
T Consensus        18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~   97 (195)
T 3cbq_A           18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG   97 (195)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence            3445679999999999999999999987655444445555555667778888899999999999986654 667788899


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      +++++|||++++.+|..+..|+..+..... ...|+++++||+|+...+.+..+++..++...++.++++||+++.|+++
T Consensus        98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~  177 (195)
T 3cbq_A           98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE  177 (195)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence            999999999999999999999988776543 4689999999999987788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          167 AFEVVIREIYS  177 (220)
Q Consensus       167 l~~~l~~~~~~  177 (220)
                      +|+++.+.+.+
T Consensus       178 lf~~l~~~i~~  188 (195)
T 3cbq_A          178 LFEGAVRQIRL  188 (195)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999987753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.97  E-value=3.3e-29  Score=185.14  Aligned_cols=167  Identities=41%  Similarity=0.728  Sum_probs=145.1

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      +++..+||+++|++|||||||++++.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..+++.+++
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            46778999999999999999999999999988888888887777888888888999999999999988888899999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCC----CCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HhCCeEEEeccCCCCCH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCD----TAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-EEGLFFMETSALDSTNV  164 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v  164 (220)
                      +++|+|+++..++..+..|+..+.....    ...|+++++||+|+. .+....+++..++. ...++++++||+++.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999888765432    568999999999987 56778888888888 56789999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027703          165 EAAFEVVIREIYS  177 (220)
Q Consensus       165 ~~l~~~l~~~~~~  177 (220)
                      +++++++.+.+.+
T Consensus       162 ~~l~~~l~~~~~~  174 (177)
T 1wms_A          162 AAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.97  E-value=1.2e-29  Score=186.12  Aligned_cols=164  Identities=47%  Similarity=0.833  Sum_probs=142.2

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999999988888888877777778888888999999999999888888999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      |+|++++.++..+..|+..+........|+++++||+|+ ..+....+++..++...+++++++||+++.|+++++++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999998888776667899999999998 4466778888999999999999999999999999999999


Q ss_pred             HHHHH
Q 027703          173 REIYS  177 (220)
Q Consensus       173 ~~~~~  177 (220)
                      +.+.+
T Consensus       161 ~~~~~  165 (170)
T 1g16_A          161 KLIQE  165 (170)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88865

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.97  E-value=2.2e-29  Score=186.55  Aligned_cols=169  Identities=32%  Similarity=0.499  Sum_probs=148.7

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      ..++...+||+++|++|||||||++++.+..+...+.+|.+.... ..+.+++..+.+.+||++|+..+...+..++..+
T Consensus         3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   81 (181)
T 2fn4_A            3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG   81 (181)
T ss_dssp             -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence            344566799999999999999999999999988888888776554 6677788888999999999998888888999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHH-hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELT-THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      +++++|+|+++..++..+..|+..+. .......|+++++||+|+...+.+..+++..+....++.++++||+++.|+++
T Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  161 (181)
T 2fn4_A           82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE  161 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence            99999999999999999999988874 34445789999999999987778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          167 AFEVVIREIYS  177 (220)
Q Consensus       167 l~~~l~~~~~~  177 (220)
                      ++++|.+.+.+
T Consensus       162 l~~~l~~~~~~  172 (181)
T 2fn4_A          162 AFEQLVRAVRK  172 (181)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988865

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.97  E-value=1.1e-29  Score=186.04  Aligned_cols=164  Identities=35%  Similarity=0.625  Sum_probs=147.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      +..+||+++|++|||||||+++|.+..+...+.+|.+.+.....+.+++..+.+.+||++|+..+...+..++..+++++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999999998888888887777788888888899999999999988888899999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|+|++++.+++.+..|+..+.... ...|+++++||+|+...+.+..+++..++...+++++++||+++.|+++++++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999988876554 468999999999998777788889999999999999999999999999999999


Q ss_pred             HHHHH
Q 027703          172 IREIY  176 (220)
Q Consensus       172 ~~~~~  176 (220)
                      .+.+.
T Consensus       162 ~~~~~  166 (168)
T 1z2a_A          162 AEKHL  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=4.2e-29  Score=187.41  Aligned_cols=172  Identities=44%  Similarity=0.775  Sum_probs=151.7

Q ss_pred             CCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhh
Q 027703            5 ERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYY   84 (220)
Q Consensus         5 ~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~   84 (220)
                      +.+.......+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..++
T Consensus         6 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   85 (195)
T 1x3s_A            6 SGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYY   85 (195)
T ss_dssp             ---CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHH
T ss_pred             CCcccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHh
Confidence            34455667789999999999999999999999999988888888887778888888889999999999998888899999


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703           85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN  163 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (220)
                      +.++++++|+|++++.++..+..|+..+.... ....|+++++||+|+. .+.+..+++..++...++.++++||+++.|
T Consensus        86 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (195)
T 1x3s_A           86 RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDG  164 (195)
T ss_dssp             TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence            99999999999999999999999988876654 2568999999999984 356778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027703          164 VEAAFEVVIREIYS  177 (220)
Q Consensus       164 v~~l~~~l~~~~~~  177 (220)
                      +++++++|.+.+.+
T Consensus       165 i~~l~~~l~~~~~~  178 (195)
T 1x3s_A          165 VQCAFEELVEKIIQ  178 (195)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988865

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.97  E-value=6.4e-29  Score=186.03  Aligned_cols=169  Identities=38%  Similarity=0.691  Sum_probs=149.5

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeee-EEEEEeCCe---------EEEEEEEecCCcchhhhh
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQ-TQVVDIDGK---------EVKAQIWDTAGQERFRAV   79 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~-~~~i~~~~~---------~~~~~~~d~~g~~~~~~~   79 (220)
                      +.+..+||+++|++|||||||+++|.+..+...+.+|.+.+.. ...+.+++.         .+.+.+||++|+..+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            4677899999999999999999999999998888888877665 455656655         789999999999998888


Q ss_pred             hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEecc
Q 027703           80 TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSA  158 (220)
Q Consensus        80 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (220)
                      +..+++.++++++|+|++++.++..+..|+..+..... ...|+++++||+|+...+.+..+++..++...+++++++||
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  166 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA  166 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999999999999999988776554 57899999999999877778888999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 027703          159 LDSTNVEAAFEVVIREIYSN  178 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~~~~~  178 (220)
                      +++.|+++++++|.+.+.+.
T Consensus       167 ~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          167 ANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.97  E-value=2.2e-29  Score=188.44  Aligned_cols=165  Identities=44%  Similarity=0.758  Sum_probs=145.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh-hhhHHhhcCCcEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR-AVTSAYYRGAVGA   90 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~   90 (220)
                      ...+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+. ..+..+++.++++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            456999999999999999999999999998888888877777888888888999999999998887 7788899999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCC---CCHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDS---TNVEA  166 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~v~~  166 (220)
                      ++|+|+++..++..+..|+..+.... ....|+++++||+|+...+.+..+++..++...++.++++||+++   .++.+
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~  177 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  177 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence            99999999999999999998877654 456899999999999877788889999999999999999999999   99999


Q ss_pred             HHHHHHHHHH
Q 027703          167 AFEVVIREIY  176 (220)
Q Consensus       167 l~~~l~~~~~  176 (220)
                      +|++|.+.+.
T Consensus       178 l~~~l~~~i~  187 (189)
T 1z06_A          178 IFMTLAHKLK  187 (189)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHHHh
Confidence            9999987664

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=3.3e-29  Score=190.69  Aligned_cols=171  Identities=44%  Similarity=0.809  Sum_probs=148.8

Q ss_pred             CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703            7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (220)
Q Consensus         7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   86 (220)
                      .....+..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..++..
T Consensus        13 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   92 (213)
T 3cph_A           13 NGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG   92 (213)
T ss_dssp             -------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTT
T ss_pred             CCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc
Confidence            34455667999999999999999999999999988888888877777788888888999999999999888888999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      ++++++|+|++++.++..+..|+..+........|+++++||+|+ ..+....+++..++...+++++++||+++.|+.+
T Consensus        93 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  171 (213)
T 3cph_A           93 AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNE  171 (213)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999998887766667899999999998 4567778888899999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          167 AFEVVIREIYSN  178 (220)
Q Consensus       167 l~~~l~~~~~~~  178 (220)
                      ++++|.+.+.+.
T Consensus       172 l~~~l~~~~~~~  183 (213)
T 3cph_A          172 IFFTLAKLIQEK  183 (213)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999888654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.97  E-value=9.2e-30  Score=188.34  Aligned_cols=167  Identities=34%  Similarity=0.517  Sum_probs=145.2

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCC-eEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG-KEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      +...+||+++|++|||||||++++.+..+...+.+|.+.+.....+.+++ ..+.+.+||++|+..+...+..+++.+++
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            34569999999999999999999999988877778887777777787776 57899999999999988889999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      +++|+|++++.+++.+..|+..+....   ...+|+++++||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            999999999999999988888876532   13344789999999987778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          167 AFEVVIREIYS  177 (220)
Q Consensus       167 l~~~l~~~~~~  177 (220)
                      ++++|.+.+.+
T Consensus       163 l~~~l~~~~~~  173 (178)
T 2hxs_A          163 CFQKVAAEILG  173 (178)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999887643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.97  E-value=9.5e-30  Score=192.10  Aligned_cols=169  Identities=41%  Similarity=0.674  Sum_probs=137.3

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      .......+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+
T Consensus        22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  101 (199)
T 2p5s_A           22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA  101 (199)
T ss_dssp             ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred             CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence            34455679999999999999999999999998888888887777777888888889999999999998888888999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCC------CCCCCCHHHHHHHHHHhCCeEEEeccCCC
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD------SIRDVSTEEGKSLAEEEGLFFMETSALDS  161 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (220)
                      +++++|+|+++..++..+..|+..+........|+++++||+|+.      ..+.+..+++..++...+++++++||+++
T Consensus       102 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g  181 (199)
T 2p5s_A          102 DGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG  181 (199)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTC
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCC
Confidence            999999999999999999999988877665678999999999985      35677888899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIREIY  176 (220)
Q Consensus       162 ~~v~~l~~~l~~~~~  176 (220)
                      .|+.+++++|.+.+.
T Consensus       182 ~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          182 SNIVEAVLHLAREVK  196 (199)
T ss_dssp             TTHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999988764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.97  E-value=1.6e-29  Score=185.48  Aligned_cols=164  Identities=30%  Similarity=0.380  Sum_probs=132.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-hhHHhhcCCcEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-VTSAYYRGAVGALV   92 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~i~   92 (220)
                      .+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+.. .+..+++.++++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998887777777767777777888899899999999999987765 56667888999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      |||++++.++..+..|+..+..... ...|+++++||+|+...+.+..+++..++...+++++++||+++.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999998776544 468999999999998778899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027703          172 IREIYS  177 (220)
Q Consensus       172 ~~~~~~  177 (220)
                      .+.+..
T Consensus       162 ~~~i~~  167 (169)
T 3q85_A          162 VRQIRL  167 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.97  E-value=2.7e-29  Score=186.46  Aligned_cols=166  Identities=33%  Similarity=0.463  Sum_probs=148.0

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      +...+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            34679999999999999999999999999888888887666 66777888889999999999998888888999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      ++|+|++++.+++.+..|+..+.... ....|+++++||+|+...+.+..+++..++...+++++++||+++.|+.++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  161 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  161 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence            99999999999999999988876543 35689999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027703          170 VVIREIYS  177 (220)
Q Consensus       170 ~l~~~~~~  177 (220)
                      +|.+.+..
T Consensus       162 ~l~~~~~~  169 (181)
T 3t5g_A          162 RIILEAEK  169 (181)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99988764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.97  E-value=1.8e-29  Score=192.84  Aligned_cols=172  Identities=26%  Similarity=0.471  Sum_probs=144.0

Q ss_pred             CCCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHh
Q 027703            4 EERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAY   83 (220)
Q Consensus         4 ~~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~   83 (220)
                      +.+.++.....+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+
T Consensus        17 q~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   95 (214)
T 3q3j_B           17 QGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLC   95 (214)
T ss_dssp             ----------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGG
T ss_pred             hccCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHH
Confidence            345566667789999999999999999999999999988888887665 4566677888999999999999999999999


Q ss_pred             hcCCcEEEEEEeCCCcccHHH-HHHHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhC
Q 027703           84 YRGAVGALVVYDITRRSSFDS-VKRWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEG  150 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~  150 (220)
                      ++.++++++|||++++.++.. +..|+..+.... ...|+++++||+|+...            +.+..+++..++...+
T Consensus        96 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  174 (214)
T 3q3j_B           96 YSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG  174 (214)
T ss_dssp             CTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred             cCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC
Confidence            999999999999999999999 688888887764 46899999999998753            6788999999999999


Q ss_pred             C-eEEEeccCCCCC-HHHHHHHHHHHHHH
Q 027703          151 L-FFMETSALDSTN-VEAAFEVVIREIYS  177 (220)
Q Consensus       151 ~-~~~~~Sa~~~~~-v~~l~~~l~~~~~~  177 (220)
                      + .++++||+++.| ++++|+++.+.+.+
T Consensus       175 ~~~~~e~SA~~g~g~v~~lf~~l~~~~~~  203 (214)
T 3q3j_B          175 AEIYLEGSAFTSEKSIHSIFRTASMLCLN  203 (214)
T ss_dssp             CSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence            9 999999999998 99999999988764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.97  E-value=2e-29  Score=188.60  Aligned_cols=165  Identities=31%  Similarity=0.469  Sum_probs=140.2

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      ++...+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+... ..+++.+++
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            345579999999999999999999999999888888877554 355677888899999999999877664 568899999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEecc-CCCCCHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSA-LDSTNVE  165 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~v~  165 (220)
                      +++|||++++.+++.+..|+..+....   ....|+++++||+|+...+.+..+++..++...++.++++|| +++.|++
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~  174 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ  174 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence            999999999999999999998876553   246899999999999877888899999999999999999999 8999999


Q ss_pred             HHHHHHHHHHH
Q 027703          166 AAFEVVIREIY  176 (220)
Q Consensus       166 ~l~~~l~~~~~  176 (220)
                      ++|++|.+.+.
T Consensus       175 ~lf~~l~~~i~  185 (187)
T 3c5c_A          175 HVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.97  E-value=7.8e-29  Score=185.04  Aligned_cols=164  Identities=20%  Similarity=0.282  Sum_probs=141.0

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      ...+...+||+++|++|||||||++++.+..+...+.+|.+  .....+.+++..+.+.+||++|+..+.     +++.+
T Consensus        14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~   86 (184)
T 3ihw_A           14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV   86 (184)
T ss_dssp             --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred             CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence            44556689999999999999999999999999888877743  234677888989999999999987665     77789


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCC--CCCCCCCHHHHHHHHHHhC-CeEEEeccCCCCC
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDL--DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTN  163 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl--~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  163 (220)
                      +++++|||++++.+|+.+..|+..+..... ...|+++++||+|+  ...+.+..+++..++...+ +.++++||+++.|
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  166 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN  166 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence            999999999999999999999999877643 56899999999998  3567788899999999986 8999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027703          164 VEAAFEVVIREIYSN  178 (220)
Q Consensus       164 v~~l~~~l~~~~~~~  178 (220)
                      ++++|+++.+.+.+.
T Consensus       167 v~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          167 VERVFQDVAQKVVAL  181 (184)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.97  E-value=8.1e-29  Score=186.14  Aligned_cols=171  Identities=29%  Similarity=0.508  Sum_probs=144.7

Q ss_pred             CCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhh
Q 027703            5 ERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYY   84 (220)
Q Consensus         5 ~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~   84 (220)
                      ..........+||+++|++|||||||++++.+..+...+.+|.+.... ..+.+++..+.+.+||++|+..+...+..++
T Consensus        14 ~~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   92 (194)
T 3reg_A           14 AGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSY   92 (194)
T ss_dssp             -------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGC
T ss_pred             cccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhc
Confidence            334455667899999999999999999999999998888888876554 4667788889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCCC--CCCCHHHHHHHHHHhCCe-EEEeccCC
Q 027703           85 RGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI--RDVSTEEGKSLAEEEGLF-FMETSALD  160 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~  160 (220)
                      +.++++++|+|++++.++..+ ..|+..+.... ...|+++++||+|+...  +.+..+++..++...++. ++++||++
T Consensus        93 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  171 (194)
T 3reg_A           93 ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVA  171 (194)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred             cCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence            999999999999999999997 56777776553 46899999999998743  678889999999999998 99999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREIYS  177 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~  177 (220)
                      +.|++++|++|.+.+.+
T Consensus       172 ~~gi~~l~~~l~~~i~~  188 (194)
T 3reg_A          172 KIGLNEVFEKSVDCIFS  188 (194)
T ss_dssp             TBSHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.97  E-value=6.1e-29  Score=188.39  Aligned_cols=168  Identities=36%  Similarity=0.669  Sum_probs=146.6

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      .+...+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+++
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            45678999999999999999999999999998888888888888888888888999999999999888888889999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCC----CCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HhCCeEEEeccCCCCCH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCD----TAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-EEGLFFMETSALDSTNV  164 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v  164 (220)
                      +++|+|++++.++..+..|+..+.....    ...|+++++||+|+. .+....+++..+.. ..+++++++||+++.|+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999888665432    468999999999987 45667788888887 67789999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027703          165 EAAFEVVIREIYSN  178 (220)
Q Consensus       165 ~~l~~~l~~~~~~~  178 (220)
                      ++++++|.+.+.+.
T Consensus       163 ~~l~~~l~~~~~~~  176 (207)
T 1vg8_A          163 EQAFQTIARNALKQ  176 (207)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.97  E-value=3.1e-29  Score=191.59  Aligned_cols=173  Identities=37%  Similarity=0.702  Sum_probs=149.1

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe----------EEEEEEEecCCcchhh
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK----------EVKAQIWDTAGQERFR   77 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~----------~~~~~~~d~~g~~~~~   77 (220)
                      .+..+..+||+++|++|||||||+++|.+..+...+.+|.+.+.....+.+++.          .+.+.+||++|+..+.
T Consensus        19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~   98 (217)
T 2f7s_A           19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR   98 (217)
T ss_dssp             --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred             CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence            344567899999999999999999999999988777788777666666766665          7889999999999888


Q ss_pred             hhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEe
Q 027703           78 AVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMET  156 (220)
Q Consensus        78 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (220)
                      ..+..+++.++++++|+|+++..++..+..|+..+..... ...|+++++||+|+...+.+..+++..++...++.++++
T Consensus        99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  178 (217)
T 2f7s_A           99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET  178 (217)
T ss_dssp             HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred             hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence            8899999999999999999999999999888877654433 568999999999998777788889999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhh
Q 027703          157 SALDSTNVEAAFEVVIREIYSNIS  180 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~~~~~~~  180 (220)
                      ||+++.|+++++++|.+.+.+...
T Consensus       179 Sa~~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          179 SAATGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999998876543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.97  E-value=3.4e-29  Score=185.67  Aligned_cols=168  Identities=38%  Similarity=0.672  Sum_probs=132.8

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~   88 (220)
                      .+...+||+++|++|||||||++++.+..+...+.++.+.+.....+.++ +..+.+.+||++|+..+...+..+++.++
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            45667999999999999999999999999988888888877777777776 55688999999999988888888999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhCC----CCCcEEEEEecCCCC-CCCCCCHHHHHHHHH-HhCCeEEEeccCCCC
Q 027703           89 GALVVYDITRRSSFDSVKRWLEELTTHCD----TAVGRMLVGNKCDLD-SIRDVSTEEGKSLAE-EEGLFFMETSALDST  162 (220)
Q Consensus        89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~v~~k~Dl~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  162 (220)
                      ++++|+|+++..++..+..|+..+.....    ...|+++++||+|+. ..+.+..+++..++. ..+++++++||+++.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            99999999999999999999888765432    568999999999985 335567888888887 567899999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIREIYS  177 (220)
Q Consensus       163 ~v~~l~~~l~~~~~~  177 (220)
                      |+++++++|.+.+.+
T Consensus       164 gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          164 NVDTAFEEIARSALQ  178 (182)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988765

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.97  E-value=1.2e-28  Score=181.75  Aligned_cols=164  Identities=32%  Similarity=0.451  Sum_probs=132.2

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch--hhhhhHHhhcCCcEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER--FRAVTSAYYRGAVGA   90 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~--~~~~~~~~~~~~~~~   90 (220)
                      ..+||+++|++|||||||+++|.+..+...+. +.+.+.....+.+++..+.+.+||++|+..  +......+++.++++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            46899999999999999999999998766544 344455566777888888999999999876  455667788999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      ++|||++++.++..+..|+..+.... ....|+++++||+|+...+.+..+++..++...+++++++||+++.|++++++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  161 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE  161 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence            99999999999999999988876653 34689999999999987788888888899988999999999999999999999


Q ss_pred             HHHHHHHH
Q 027703          170 VVIREIYS  177 (220)
Q Consensus       170 ~l~~~~~~  177 (220)
                      +|.+.+.+
T Consensus       162 ~l~~~~~~  169 (175)
T 2nzj_A          162 GVVRQLRL  169 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988765

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.97  E-value=1.3e-28  Score=183.26  Aligned_cols=170  Identities=36%  Similarity=0.530  Sum_probs=146.4

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      ++.....+||+++|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||++|+..+...+..++..+
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   90 (187)
T 2a9k_A           12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG   90 (187)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence            33445679999999999999999999999998888877776544 45567788888999999999998888889999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      +++++|||+++..++..+..|+..+..... ...|+++++||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  170 (187)
T 2a9k_A           91 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK  170 (187)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence            999999999999999999999888766543 4689999999999987778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          167 AFEVVIREIYSN  178 (220)
Q Consensus       167 l~~~l~~~~~~~  178 (220)
                      ++++|.+.+.+.
T Consensus       171 l~~~l~~~i~~~  182 (187)
T 2a9k_A          171 VFFDLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.97  E-value=1.4e-28  Score=179.83  Aligned_cols=162  Identities=37%  Similarity=0.562  Sum_probs=141.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..+...+.++.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            58999999999999999999999998888877776544 35567788888999999999998888889999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      +|++++.++..+..|+..+..... ...|+++++||+|+...+....+++..++...+++++++||+++.|++++++++.
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  162 (168)
T 1u8z_A           83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM  162 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHH
Confidence            999999999999999888766543 4689999999999987778888999999999999999999999999999999999


Q ss_pred             HHHH
Q 027703          173 REIY  176 (220)
Q Consensus       173 ~~~~  176 (220)
                      +.+.
T Consensus       163 ~~i~  166 (168)
T 1u8z_A          163 REIR  166 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2e-28  Score=183.92  Aligned_cols=166  Identities=30%  Similarity=0.507  Sum_probs=143.7

Q ss_pred             CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703            9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (220)
Q Consensus         9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~   88 (220)
                      .++...+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++
T Consensus        13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   91 (194)
T 2atx_A           13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   91 (194)
T ss_dssp             CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence            3456789999999999999999999999998888888876543 456667778889999999999988888889999999


Q ss_pred             EEEEEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEE
Q 027703           89 GALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFM  154 (220)
Q Consensus        89 ~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~  154 (220)
                      ++++|||++++.++..+. .|+..+..... ..|+++++||+|+...            +.+..+++..++...+. .++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (194)
T 2atx_A           92 VFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV  170 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence            999999999999999987 68777776543 6899999999998753            46778889999999887 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHH
Q 027703          155 ETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       155 ~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      ++||+++.|++++|++|.+.+.
T Consensus       171 ~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          171 ECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EeeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999987654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.97  E-value=3.1e-28  Score=183.68  Aligned_cols=164  Identities=38%  Similarity=0.677  Sum_probs=144.1

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE-----------------------------
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE-----------------------------   62 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~-----------------------------   62 (220)
                      +..+||+++|++|||||||+++|.+..+...+.+|.+.......+.+++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            456999999999999999999999999998888888777776677666644                             


Q ss_pred             --------EEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703           63 --------VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI  134 (220)
Q Consensus        63 --------~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~  134 (220)
                              +.+.+||++|+..+...+..+++.++++++|+|++++.++..+..|+..+.....  .|+++++||+| ...
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~  161 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNK  161 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-ccc
Confidence                    7899999999998888889999999999999999999999999999888876543  89999999999 555


Q ss_pred             CCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027703          135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN  178 (220)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  178 (220)
                      +....+++..++...+++++++||+++.|+.+++++|.+.+.++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            67888999999999999999999999999999999999887653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.97  E-value=2e-28  Score=179.10  Aligned_cols=161  Identities=34%  Similarity=0.549  Sum_probs=141.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999998888888876544 35566777888999999999998888888999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-GLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|++++.++..+..|+..+.... ....|+++++||+|+...+.+..+++..++... +.+++++||+++.|+++++++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence            99999999999999988876543 356899999999999877778888898998887 7899999999999999999999


Q ss_pred             HHHH
Q 027703          172 IREI  175 (220)
Q Consensus       172 ~~~~  175 (220)
                      .+.+
T Consensus       162 ~~~i  165 (167)
T 1c1y_A          162 VRQI  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.97  E-value=6.3e-29  Score=187.87  Aligned_cols=165  Identities=33%  Similarity=0.510  Sum_probs=142.9

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ...+||+++|++|||||||+++|.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.+++++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            4579999999999999999999999999988888877655 556666777789999999999988888999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      +|||++++.++..+..|+..+.... ....|+++++||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  180 (201)
T 3oes_A          101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999998876543 346899999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027703          171 VIREIYS  177 (220)
Q Consensus       171 l~~~~~~  177 (220)
                      |.+.+.+
T Consensus       181 l~~~i~~  187 (201)
T 3oes_A          181 VIQEIAR  187 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998865

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2e-28  Score=186.56  Aligned_cols=167  Identities=29%  Similarity=0.391  Sum_probs=136.0

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcC--CCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch-hhhhhHHhhcC
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEF--DSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-FRAVTSAYYRG   86 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~   86 (220)
                      .....+||+++|++|||||||++++.+...  ...+ ++.+.+.....+.+++..+.+.+||+.|+.. +......+++.
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            445679999999999999999999997543  3333 3344455566777888889999999999876 44455667888


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE  165 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (220)
                      ++++++|||+++..+|+.+..|+..+.... ....|++++|||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~  191 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK  191 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999999988776532 3468999999999998777888888888888899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          166 AAFEVVIREIYS  177 (220)
Q Consensus       166 ~l~~~l~~~~~~  177 (220)
                      ++|++|.+.+..
T Consensus       192 elf~~l~~~i~~  203 (211)
T 2g3y_A          192 ELFEGIVRQVRL  203 (211)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.96  E-value=1.4e-28  Score=179.91  Aligned_cols=162  Identities=31%  Similarity=0.417  Sum_probs=121.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..+.... ++.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            589999999999999999999987665433 2333222 35567788889999999999998888888999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      ||++++.+++.+..|+..+.... ....|+++++||+|+...+.+..+++..++...+++++++||+++.|++++|+++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999998876643 35689999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027703          173 REIYS  177 (220)
Q Consensus       173 ~~~~~  177 (220)
                      +.+.+
T Consensus       160 ~~~~~  164 (166)
T 3q72_A          160 RQIRL  164 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88765

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2.3e-28  Score=184.05  Aligned_cols=165  Identities=36%  Similarity=0.459  Sum_probs=144.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ...+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+.. ...+..+++.+++++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4569999999999999999999999999888888876544 45567788889999999999887 667788889999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC-CHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFE  169 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l~~  169 (220)
                      +|||++++.+++.+..|+..+.... ....|+++++||+|+...+.+..+++..++...+++++++||+++. |+.++|+
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~  183 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  183 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence            9999999999999999988876543 3578999999999998777888899999999999999999999999 9999999


Q ss_pred             HHHHHHHHH
Q 027703          170 VVIREIYSN  178 (220)
Q Consensus       170 ~l~~~~~~~  178 (220)
                      +|.+.+.+.
T Consensus       184 ~l~~~i~~~  192 (196)
T 2atv_A          184 ELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999888754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.96  E-value=1.9e-28  Score=178.93  Aligned_cols=162  Identities=35%  Similarity=0.545  Sum_probs=143.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..+...+.++.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999998888877765433 56677788888999999999998888888899999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      +|++++.+++.+..|+..+.... ....|+++++||+|+...+.+..+++..++...+++++++||+++.|+++++++|.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence            99999999999999988876543 35689999999999987778888899999999999999999999999999999998


Q ss_pred             HHHH
Q 027703          173 REIY  176 (220)
Q Consensus       173 ~~~~  176 (220)
                      +.+.
T Consensus       162 ~~~~  165 (167)
T 1kao_A          162 RQMN  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.96  E-value=2.4e-28  Score=184.48  Aligned_cols=171  Identities=34%  Similarity=0.541  Sum_probs=135.6

Q ss_pred             CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703            6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR   85 (220)
Q Consensus         6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~   85 (220)
                      +........+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..++.
T Consensus        12 ~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   90 (201)
T 2q3h_A           12 RAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYT   90 (201)
T ss_dssp             --------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGT
T ss_pred             ccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcC
Confidence            3445667789999999999999999999999988888877775443 456777888889999999999988888888999


Q ss_pred             CCcEEEEEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhCC-
Q 027703           86 GAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEGL-  151 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~~-  151 (220)
                      .++++++|||++++.++..+. .|+..+..... ..|+++++||+|+..            .+.+..+++..++...+. 
T Consensus        91 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (201)
T 2q3h_A           91 NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAA  169 (201)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence            999999999999999999987 68877776543 689999999999865            356778889999988887 


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027703          152 FFMETSALDSTNVEAAFEVVIREIYSN  178 (220)
Q Consensus       152 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~  178 (220)
                      .++++||+++.|++++|++|.+.+.+.
T Consensus       170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          170 SYIECSALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence            899999999999999999999888653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.96  E-value=3.3e-28  Score=180.13  Aligned_cols=159  Identities=22%  Similarity=0.329  Sum_probs=134.2

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      .+.+||+++|++|||||||++++.+..+.. +.+|.+.. ....+.+++..+.+.+||++|+..     ..+++.+++++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            356999999999999999999999999886 66676533 356677888889999999999875     45778899999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhh---CCCCCcEEEEEecCCCC--CCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTH---CDTAVGRMLVGNKCDLD--SIRDVSTEEGKSLAEEE-GLFFMETSALDSTNVE  165 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~v~~k~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~  165 (220)
                      +|||++++.++..+..|+..+...   .....|+++++||+|+.  ..+.+..+++..++... +++++++||+++.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            999999999999999876655433   23568999999999983  45678888898888876 6899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          166 AAFEVVIREIYS  177 (220)
Q Consensus       166 ~l~~~l~~~~~~  177 (220)
                      ++|+++.+.+.+
T Consensus       158 ~lf~~l~~~~~~  169 (178)
T 2iwr_A          158 RVFQEVAQKVVT  169 (178)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988865

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.96  E-value=4.1e-29  Score=189.28  Aligned_cols=167  Identities=30%  Similarity=0.478  Sum_probs=110.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhC--cCCCCCcccceeeeeEEEEEeCCe--EEEEEEEecCCcchhhhhhHHhhcCC
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARN--EFDSNSKATIGVEFQTQVVDIDGK--EVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~--~~~~~~~~t~~~~~~~~~i~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      ...+||+++|++|||||||+++|.+.  .+...+.+|.+.+.....+.+++.  .+.+.+||++|+..+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999999999  788788888776667777878776  78999999999998888888899999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCC---CCCcEEEEEecCCCCC-CCCCCHHHHHHHHHHhCCeEEEeccCC-CC
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCD---TAVGRMLVGNKCDLDS-IRDVSTEEGKSLAEEEGLFFMETSALD-ST  162 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~v~~k~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  162 (220)
                      +++++|+|++++.++..+..|+..+.....   ...|+++++||+|+.. .+.+..+++..++...++.++++||++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999998877665   5789999999999987 678888999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIREIYSN  178 (220)
Q Consensus       163 ~v~~l~~~l~~~~~~~  178 (220)
                      |+.++|++|.+.+.+.
T Consensus       178 gi~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          178 DADAPFLSIATTFYRN  193 (208)
T ss_dssp             --CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999988653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.96  E-value=2.3e-28  Score=182.22  Aligned_cols=165  Identities=32%  Similarity=0.555  Sum_probs=140.5

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      .++..+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..++..+++
T Consensus         3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   81 (184)
T 1m7b_A            3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA   81 (184)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence            356679999999999999999999999999888888876554 3566778888999999999999888888889999999


Q ss_pred             EEEEEeCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhC-CeEEE
Q 027703           90 ALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEG-LFFME  155 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~  155 (220)
                      +++|||++++.++..+ ..|+..+.... ...|+++++||+|+...            +.+..+++..++...+ +.+++
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  160 (184)
T 1m7b_A           82 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  160 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence            9999999999999998 67877776654 46899999999998642            5678888999998877 78999


Q ss_pred             eccC-CCCCHHHHHHHHHHHHH
Q 027703          156 TSAL-DSTNVEAAFEVVIREIY  176 (220)
Q Consensus       156 ~Sa~-~~~~v~~l~~~l~~~~~  176 (220)
                      +||+ ++.|++++|+++.+.+.
T Consensus       161 ~Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          161 CSALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHH
T ss_pred             eeecCCCcCHHHHHHHHHHHHh
Confidence            9999 68999999999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.96  E-value=1.9e-27  Score=177.38  Aligned_cols=165  Identities=36%  Similarity=0.533  Sum_probs=142.6

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..+||+++|++|||||||+++|.+..+...+.++.+. .....+.+++..+.+.+||++|+..+...+..++..++++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            5699999999999999999999999988888777643 344666778888899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      |+|+++..++..+..|+..+.... ....|+++++||+|+. .+....+++..++...+++++++||+++.|+.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  160 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL  160 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999988876643 3568999999999986 46678888999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 027703          172 IREIYSNI  179 (220)
Q Consensus       172 ~~~~~~~~  179 (220)
                      .+.+.+..
T Consensus       161 ~~~~~~~~  168 (189)
T 4dsu_A          161 VREIRKHK  168 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99887643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.96  E-value=2.9e-28  Score=185.02  Aligned_cols=168  Identities=32%  Similarity=0.548  Sum_probs=141.3

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      .......+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.+
T Consensus        22 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  100 (205)
T 1gwn_A           22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS  100 (205)
T ss_dssp             -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence            33456679999999999999999999999999888888876554 45566778889999999999998888888899999


Q ss_pred             cEEEEEEeCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhC-CeE
Q 027703           88 VGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEG-LFF  153 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~-~~~  153 (220)
                      +++++|||++++.+|..+ ..|+..+.... ...|+++++||+|+..            .+.+..+++..++...+ +.+
T Consensus       101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  179 (205)
T 1gwn_A          101 DAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY  179 (205)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEE
Confidence            999999999999999998 67888776654 4689999999999864            25678888999998877 689


Q ss_pred             EEeccC-CCCCHHHHHHHHHHHHHH
Q 027703          154 METSAL-DSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       154 ~~~Sa~-~~~~v~~l~~~l~~~~~~  177 (220)
                      +++||+ ++.|++++|++|.+.+.+
T Consensus       180 ~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          180 IECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             EECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEeeeccCCcCHHHHHHHHHHHHhh
Confidence            999999 689999999999987653

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.96  E-value=7.4e-29  Score=189.64  Aligned_cols=174  Identities=28%  Similarity=0.454  Sum_probs=145.4

Q ss_pred             CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      ..+...+||+++|++|||||||+++|.+..+...+.++.+.......+... +..+.+.+||++|+..+...+..++..+
T Consensus         6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (218)
T 4djt_A            6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA   85 (218)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence            445678999999999999999999999998887777777766665555443 3448899999999998888889999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +++++|+|+++..++..+..|+..+........|+++++||+|+...+.+..+++..++...++.++++||+++.|++++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  165 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP  165 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence            99999999999999999999999887766666899999999999877788888888888889999999999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 027703          168 FEVVIREIYSNISRK  182 (220)
Q Consensus       168 ~~~l~~~~~~~~~~~  182 (220)
                      +++|.+.+.+.....
T Consensus       166 ~~~l~~~~~~~~~~~  180 (218)
T 4djt_A          166 FLHLARIFTGRPDLI  180 (218)
T ss_dssp             HHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHhcccccc
Confidence            999999887654433

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.96  E-value=1.3e-27  Score=180.73  Aligned_cols=168  Identities=30%  Similarity=0.512  Sum_probs=141.7

Q ss_pred             CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703            7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (220)
Q Consensus         7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   86 (220)
                      +...+...+||+++|++|||||||++++.+..+...+.++.+.... ..+.+++..+.+.+||++|+..+...+..+++.
T Consensus        18 ~~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   96 (201)
T 2gco_A           18 GSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPD   96 (201)
T ss_dssp             ----CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred             CCCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCC
Confidence            3445566799999999999999999999999998888888765554 446778888899999999999888888889999


Q ss_pred             CcEEEEEEeCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-e
Q 027703           87 AVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-F  152 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~  152 (220)
                      ++++++|||++++.++..+ ..|+..+.... ...|+++++||+|+...            +.+..+++..++...+. .
T Consensus        97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  175 (201)
T 2gco_A           97 TDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFG  175 (201)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcE
Confidence            9999999999999999998 56777666544 36899999999998754            45778888899988888 8


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHH
Q 027703          153 FMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       153 ~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      ++++||+++.|+++++++|.+.+.
T Consensus       176 ~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          176 YLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999988754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.96  E-value=2.1e-27  Score=176.74  Aligned_cols=162  Identities=31%  Similarity=0.564  Sum_probs=140.6

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..+||+++|++|||||||++++.+..+...+.++.+... ...+.+++..+.+.+||++|+..+...+..++..++++++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            469999999999999999999999998888777775433 4556778888999999999999888888889999999999


Q ss_pred             EEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEecc
Q 027703           93 VYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETSA  158 (220)
Q Consensus        93 v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa  158 (220)
                      |+|++++.++..+. .|+..+..... ..|+++++||+|+...            +.+..+++..++...+. +++++||
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence            99999999999987 67777766544 6899999999998653            56778888899998887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 027703          159 LDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~~~  176 (220)
                      +++.|++++++++.+.+.
T Consensus       162 ~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          162 LTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCccCHHHHHHHHHHHHh
Confidence            999999999999988764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.96  E-value=1.8e-30  Score=196.08  Aligned_cols=169  Identities=50%  Similarity=0.849  Sum_probs=141.4

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      +...+..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+
T Consensus        27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~  106 (199)
T 3l0i_B           27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA  106 (199)
T ss_dssp             -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence            33456789999999999999999999999998888888888888888888898889999999999998888888899999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      |++++|+|+++..+++.+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus       107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l  186 (199)
T 3l0i_B          107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  186 (199)
T ss_dssp             SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            99999999999999999999999887776667999999999999877777777788899999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027703          168 FEVVIREIY  176 (220)
Q Consensus       168 ~~~l~~~~~  176 (220)
                      |++|.+.+.
T Consensus       187 ~~~l~~~l~  195 (199)
T 3l0i_B          187 FMTMAAEIK  195 (199)
T ss_dssp             HHHHTTTTT
T ss_pred             HHHHHHHHH
Confidence            999987654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.96  E-value=9.7e-28  Score=183.18  Aligned_cols=164  Identities=32%  Similarity=0.534  Sum_probs=122.3

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ...+||+++|++|||||||+++|.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..++..+++++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4579999999999999999999999988887777765433 456677888899999999999988888888999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEec
Q 027703           92 VVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETS  157 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  157 (220)
                      +|||++++.++..+. .|+..+.... ...|+++++||+|+...            +.+..+++..++...++ .++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 6777776654 46899999999998754            36777888999999887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 027703          158 ALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       158 a~~~~~v~~l~~~l~~~~~~  177 (220)
                      |+++.|++++|++|.+.+.+
T Consensus       190 A~~g~gi~el~~~l~~~~~~  209 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALS  209 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999988865

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.9e-27  Score=174.60  Aligned_cols=162  Identities=31%  Similarity=0.442  Sum_probs=139.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..+...+.++.+... ...+..++..+.+.+||++|+..+...+..++..++++++|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            58999999999999999999999988877777765443 34456677788999999999998888888899999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|++++.+++.+..|+..+.....  ...|+++++||+|+...+.+..+++..+....+++++++||+++.|+++++++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  161 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHH
Confidence            999999999999888887765432  468999999999998777888888889999999999999999999999999999


Q ss_pred             HHHHH
Q 027703          172 IREIY  176 (220)
Q Consensus       172 ~~~~~  176 (220)
                      .+.+.
T Consensus       162 ~~~~~  166 (172)
T 2erx_A          162 LNLEK  166 (172)
T ss_dssp             HHTCC
T ss_pred             HHHHh
Confidence            87553

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.96  E-value=6.2e-27  Score=175.09  Aligned_cols=164  Identities=37%  Similarity=0.559  Sum_probs=133.4

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      -..+||+++|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||++|+..+...+..++..+++++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            3569999999999999999999999988887777765433 456677888889999999999988888888999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      +|+|+++..++..+..|+..+..... ...|+++++||+|+.. +....+++..++...+++++++|++++.|+.+++++
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  176 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT  176 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999889888765543 4689999999999875 667788899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027703          171 VIREIYS  177 (220)
Q Consensus       171 l~~~~~~  177 (220)
                      |.+.+.+
T Consensus       177 l~~~~~~  183 (190)
T 3con_A          177 LVREIRQ  183 (190)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988865

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.96  E-value=4.8e-28  Score=181.77  Aligned_cols=167  Identities=22%  Similarity=0.268  Sum_probs=135.0

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCC-----------CcccceeeeeEEEE-EeCCeEEEEEEEecCCcch
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSN-----------SKATIGVEFQTQVV-DIDGKEVKAQIWDTAGQER   75 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~-----------~~~t~~~~~~~~~i-~~~~~~~~~~~~d~~g~~~   75 (220)
                      ...++..+||+++|++|||||||++.+.+.. ...           ..+|.+.+.....+ .+++..+.+.+||++|+..
T Consensus         8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   86 (198)
T 3t1o_A            8 FANREINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF   86 (198)
T ss_dssp             TTTTEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred             hhccccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence            3456788999999999999999998887653 333           23344444443334 4566788999999999999


Q ss_pred             hhhhhHHhhcCCcEEEEEEeCC------CcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh
Q 027703           76 FRAVTSAYYRGAVGALVVYDIT------RRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE  149 (220)
Q Consensus        76 ~~~~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~  149 (220)
                      +...+..+++.++++++|+|++      +..++..+..|+..+. ......|+++++||+|+..  ....+++..++...
T Consensus        87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~  163 (198)
T 3t1o_A           87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPE  163 (198)
T ss_dssp             CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTT
T ss_pred             HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhc
Confidence            9999999999999999999999      4566777777776662 2235689999999999875  47888999999999


Q ss_pred             CC-eEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027703          150 GL-FFMETSALDSTNVEAAFEVVIREIYSN  178 (220)
Q Consensus       150 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~  178 (220)
                      ++ .++++||+++.|++++|++|.+.+.+.
T Consensus       164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          164 GKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             CCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            99 999999999999999999999988764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.96  E-value=6.4e-27  Score=170.52  Aligned_cols=161  Identities=36%  Similarity=0.564  Sum_probs=140.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..+...+.++.+... ...+.+++..+.+.+||++|+..+...+..++..++++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            47999999999999999999999988887777765433 45666788888999999999998888888899999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      +|+++..++..+..|+..+..... ...|+++++||+|+.. +....+++..+....+++++++|++++.|+.+++++|.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999889888765543 4689999999999875 56778888999999999999999999999999999999


Q ss_pred             HHHH
Q 027703          173 REIY  176 (220)
Q Consensus       173 ~~~~  176 (220)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T 2ce2_X          161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2e-27  Score=178.91  Aligned_cols=164  Identities=29%  Similarity=0.422  Sum_probs=140.3

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      ....+||+++|++|||||||+++|.+..+...+.++.+... ...+..++..+.+.+||++|+..+...+..++..++++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            34569999999999999999999999998887777766433 34456677888999999999998888888899999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF  168 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  168 (220)
                      ++|||++++.++..+..|+..+.....  ...|+++++||+|+.. +....+++..++...++.++++||+++.|+++++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            999999999999998888877655432  3579999999999865 5677888889999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027703          169 EVVIREIY  176 (220)
Q Consensus       169 ~~l~~~~~  176 (220)
                      ++|.+.+.
T Consensus       163 ~~l~~~~~  170 (199)
T 2gf0_A          163 QELLTLET  170 (199)
T ss_dssp             HHHHHHCS
T ss_pred             HHHHHHHh
Confidence            99987654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.96  E-value=3.8e-27  Score=177.03  Aligned_cols=165  Identities=30%  Similarity=0.410  Sum_probs=132.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCc--CCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch-hhhhhHHhhcCCc
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNE--FDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-FRAVTSAYYRGAV   88 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~--~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~   88 (220)
                      ...+||+++|++|||||||++++.+..  +...+. +.+.+.....+.+++..+.+.+||+.|... .......+++.++
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            346999999999999999999999643  333333 344455566777888888999999999765 3445666788899


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703           89 GALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      ++++|||+++..+|+.+..|+..+.... ....|+++++||+|+...+.+..+++..++...++.++++||+++.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999888776543 346899999999999766778888888888888899999999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          168 FEVVIREIYS  177 (220)
Q Consensus       168 ~~~l~~~~~~  177 (220)
                      |+++.+.+..
T Consensus       163 f~~l~~~~~~  172 (192)
T 2cjw_A          163 FEGIVRQVRL  172 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.96  E-value=1e-27  Score=182.58  Aligned_cols=164  Identities=30%  Similarity=0.557  Sum_probs=140.0

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ...+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.+++++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            3569999999999999999999999999888888876444 456667888899999999999988888888999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCCC--------CCHHHHHHHHHHhCC-eEEEeccCCC
Q 027703           92 VVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIRD--------VSTEEGKSLAEEEGL-FFMETSALDS  161 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~  161 (220)
                      +|||++++.++..+. .|+..+..... ..|+++++||+|+...+.        +..+++..++...+. .++++||+++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            999999999999987 68888776543 689999999999865433        367888889888886 8999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIREIYS  177 (220)
Q Consensus       162 ~~v~~l~~~l~~~~~~  177 (220)
                      .|++++|++|.+.+.+
T Consensus       165 ~gi~~l~~~l~~~~~~  180 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQ  180 (212)
T ss_dssp             TTHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999988764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=9.8e-27  Score=176.64  Aligned_cols=164  Identities=30%  Similarity=0.512  Sum_probs=134.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ...+||+++|++|||||||++++.+..+...+.++.+.... ..+.+++..+.+.+||++|+..+...+..++..+++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            34689999999999999999999999998887777765543 34677888889999999999988888888999999999


Q ss_pred             EEEeCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEec
Q 027703           92 VVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETS  157 (220)
Q Consensus        92 ~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  157 (220)
                      +|+|++++.++..+ ..|+..+.... ...|+++++||+|+...            +.+..+++..++...+. .++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 56777776643 46899999999998654            45777888889888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 027703          158 ALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       158 a~~~~~v~~l~~~l~~~~~~  177 (220)
                      |+++.|+++++++|.+.+.+
T Consensus       181 A~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999987653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.95  E-value=1.9e-27  Score=180.21  Aligned_cols=163  Identities=31%  Similarity=0.515  Sum_probs=136.3

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      .....+||+++|++|||||||++++.+..+...+.++.+. .....+.+++..+.+.+||++|+..+...+..+++.+++
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV  104 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            3455799999999999999999999999988888777753 345566778888999999999999998888999999999


Q ss_pred             EEEEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHhCC-eEEE
Q 027703           90 ALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIR------------DVSTEEGKSLAEEEGL-FFME  155 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~  155 (220)
                      +++|+|++++.++..+. .|+..+.... ...|+++++||+|+...+            .+..+++..++...+. ++++
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  183 (204)
T 4gzl_A          105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  183 (204)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence            99999999999999997 6777776654 568999999999986543            3777888889988886 5999


Q ss_pred             eccCCCCCHHHHHHHHHHH
Q 027703          156 TSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus       156 ~Sa~~~~~v~~l~~~l~~~  174 (220)
                      +||+++.|++++|+++.+.
T Consensus       184 ~SA~~g~gi~~l~~~l~~~  202 (204)
T 4gzl_A          184 CSALTQRGLKTVFDEAIRA  202 (204)
T ss_dssp             CCTTTCTTHHHHHHHHHHT
T ss_pred             eeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999864

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.95  E-value=1.1e-27  Score=183.64  Aligned_cols=171  Identities=29%  Similarity=0.557  Sum_probs=147.2

Q ss_pred             CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703            7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (220)
Q Consensus         7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   86 (220)
                      ....+...+||+++|++|||||||+++++...+...+.++.+.......+.+++..+.+.+||++|+..+...+..+++.
T Consensus         8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (221)
T 3gj0_A            8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ   87 (221)
T ss_dssp             STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence            34556678999999999999999999988888777777888777777788888888999999999999988889999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      ++++++|+|+++..++..+..|+..+.... ...|+++++||+|+.....  ..++..++...++.++++||+++.|+.+
T Consensus        88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (221)
T 3gj0_A           88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK  164 (221)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999998887764 3689999999999875332  2255577788899999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027703          167 AFEVVIREIYSNIS  180 (220)
Q Consensus       167 l~~~l~~~~~~~~~  180 (220)
                      +|++|.+.+.....
T Consensus       165 l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          165 PFLWLARKLIGDPN  178 (221)
T ss_dssp             HHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHhCcc
Confidence            99999998876433

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.95  E-value=6.4e-28  Score=178.99  Aligned_cols=161  Identities=32%  Similarity=0.560  Sum_probs=123.6

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..+||+++|++|||||||++++.+..+...+.+|.+.... ..+.+++..+.+.+||++|+..+...+..+++.++++++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            4589999999999999999999999888877777653332 334456667888899999999988888999999999999


Q ss_pred             EEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCCC----------CCHHHHHHHHHHhCC-eEEEeccCC
Q 027703           93 VYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIRD----------VSTEEGKSLAEEEGL-FFMETSALD  160 (220)
Q Consensus        93 v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (220)
                      |+|++++.++..+. .|+..+..... ..|+++++||+|+...+.          +..+++..++...+. +++++||++
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  164 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS  164 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence            99999999999987 58777776543 689999999999865433          467888889988886 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREI  175 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~  175 (220)
                      +.|++++|++|.+.+
T Consensus       165 ~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          165 QENVKGVFDAAIRVV  179 (182)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999998765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.95  E-value=2.4e-27  Score=178.44  Aligned_cols=165  Identities=19%  Similarity=0.312  Sum_probs=126.9

Q ss_pred             CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703            7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR   85 (220)
Q Consensus         7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~   85 (220)
                      +..++.+.+||+|+|++|||||||+++|.+..+.. .+.+|.+....  .+.  +..+.+.+||++|+..+...+..+++
T Consensus        10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~   85 (199)
T 4bas_A           10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYD   85 (199)
T ss_dssp             ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred             cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHh
Confidence            45566678999999999999999999999999888 77777774333  333  34578999999999999999999999


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCC--------CCCcEEEEEecCCCCCCCCCCHHHHHHH------HHHhCC
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCD--------TAVGRMLVGNKCDLDSIRDVSTEEGKSL------AEEEGL  151 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~v~~k~Dl~~~~~~~~~~~~~~------~~~~~~  151 (220)
                      .++++++|+|+++..+|..+..|+..+.....        ...|+++++||+|+....  ..++....      +...++
T Consensus        86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  163 (199)
T 4bas_A           86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPF  163 (199)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCE
T ss_pred             cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCee
Confidence            99999999999999999999988888654311        268999999999987542  23322111      134567


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          152 FFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       152 ~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      .++++||+++.|++++|++|.+.+.+
T Consensus       164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          164 VIFASNGLKGTGVHEGFSWLQETASR  189 (199)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCccCHHHHHHHHHHHHHH
Confidence            89999999999999999999998865

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.94  E-value=3.8e-26  Score=170.81  Aligned_cols=158  Identities=20%  Similarity=0.369  Sum_probs=126.5

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..+||+++|++|||||||+++|.+..+...+.+|.+....  .+..  ..+.+.+||++|+..+...+..++..++++++
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   96 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe--CCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence            3699999999999999999999999988777777765443  3333  34788999999999988889999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  166 (220)
                      |+|+++..++..+..|+..+.... ....|+++++||+|+...  ...++......     ..++.++++||+++.|+++
T Consensus        97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~  174 (188)
T 1zd9_A           97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI  174 (188)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHH
Confidence            999999999999998888865532 256899999999998653  23333222211     2245789999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          167 AFEVVIREIY  176 (220)
Q Consensus       167 l~~~l~~~~~  176 (220)
                      ++++|.+.+.
T Consensus       175 l~~~l~~~~~  184 (188)
T 1zd9_A          175 TLQWLIQHSK  184 (188)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.94  E-value=1.9e-26  Score=173.99  Aligned_cols=154  Identities=21%  Similarity=0.256  Sum_probs=120.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..+. .+.+|.+..  .+.+.+++  +.+.+||++|+..+...+..+++.++++++|
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   99 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFL   99 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence            479999999999999999999998775 345555443  45666666  7889999999998888888999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----------------hCCeEEE
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----------------EGLFFME  155 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~  155 (220)
                      +|++++.+|..+..|+..+.... ....|+++++||+|+..  ....+++...+..                 ..+.+++
T Consensus       100 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (198)
T 1f6b_A          100 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM  177 (198)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred             EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEE
Confidence            99999999999999988876542 35689999999999875  5677777776653                 2457999


Q ss_pred             eccCCCCCHHHHHHHHHHH
Q 027703          156 TSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus       156 ~Sa~~~~~v~~l~~~l~~~  174 (220)
                      +||+++.|++++|++|.+.
T Consensus       178 ~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          178 CSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             CBTTTTBSHHHHHHHHHTT
T ss_pred             EECCCCCCHHHHHHHHHHh
Confidence            9999999999999998754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.94  E-value=5.4e-26  Score=170.39  Aligned_cols=155  Identities=20%  Similarity=0.239  Sum_probs=126.3

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..+||+++|++|||||||++++.+..+. .+.+|.+.  ....+.+++  +.+.+||++|+..+...+..+++.++++++
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            3579999999999999999999998875 34555544  355666766  788999999999888888889999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH------------hCCeEEEeccC
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE------------EGLFFMETSAL  159 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~  159 (220)
                      |+|++++.+|+.+..|+..+.... ....|+++++||+|+..  ....+++...+..            .++.++++||+
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  174 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV  174 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred             EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence            999999999999999988876532 35689999999999875  5566666665443            34579999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 027703          160 DSTNVEAAFEVVIRE  174 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~  174 (220)
                      ++.|++++|++|.+.
T Consensus       175 ~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          175 MRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTBSHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHhh
Confidence            999999999998753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.94  E-value=7.2e-26  Score=169.42  Aligned_cols=160  Identities=19%  Similarity=0.321  Sum_probs=128.9

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCc-CCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNE-FDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      ...+||+++|++|||||||+++|.+.. +...+.+|.+.  ....+.+++  +.+.+||++|+..+...+..++..++++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            346999999999999999999999987 56666677653  344555554  6889999999999888888999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCC
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCD---TAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDST  162 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~  162 (220)
                      ++|+|+++..++..+..|+..+.....   ...|+++++||+|+..  ....++....+.     ..++.++++||+++.
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  172 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGE  172 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence            999999999999999888888765432   4689999999999864  345566555553     235689999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIREIYS  177 (220)
Q Consensus       163 ~v~~l~~~l~~~~~~  177 (220)
                      |+++++++|.+.+.+
T Consensus       173 gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          173 GLQEGVDWLQDQIQT  187 (190)
T ss_dssp             THHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999887653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.94  E-value=9.7e-27  Score=169.80  Aligned_cols=156  Identities=19%  Similarity=0.362  Sum_probs=121.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..+.. +.+|.+.  ....+..  ..+.+.+||++|+..+...+..+++.++++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999888764 4556553  3334444  3468899999999998888888999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEAAF  168 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~  168 (220)
                      |++++.++..+..|+..+... .....|+++++||+|+...  ....+......     ..+++++++||+++.|+++++
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999998888876543 2346899999999998653  23333222211     124568999999999999999


Q ss_pred             HHHHHHHHH
Q 027703          169 EVVIREIYS  177 (220)
Q Consensus       169 ~~l~~~~~~  177 (220)
                      ++|.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999887653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.94  E-value=2.1e-25  Score=166.23  Aligned_cols=160  Identities=21%  Similarity=0.365  Sum_probs=128.2

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ...+||+++|++|||||||++++.+.. ...+.+|.+..  ...+.+++  +.+.+||++|+..+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            457999999999999999999999988 66666776643  34455544  68899999999988888889999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVE  165 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~  165 (220)
                      +|+|++++.++..+..|+..+.... ....|+++++||+|+...  ...++......     ..+++++++||+++.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999988888865542 356899999999998753  33444333322     235689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027703          166 AAFEVVIREIYSN  178 (220)
Q Consensus       166 ~l~~~l~~~~~~~  178 (220)
                      ++++++.+.+.++
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887643

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.94  E-value=3.7e-26  Score=167.72  Aligned_cols=158  Identities=22%  Similarity=0.320  Sum_probs=124.8

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..+||+++|++|||||||++++.+..+.. +.+|.+.  ....+.++  ...+.+||++|+..+...+..+++.+|++++
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF--NVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc--ceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            35899999999999999999999988754 4556543  33445555  3688999999999988888899999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHhCCeEEEeccCCCCCHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-----EEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      |+|++++.++..+..|+..+.... ....|+++++||+|+....  ...+.....     ...++.++++||+++.|+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE  158 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence            999999999999988887765432 2568999999999987532  333322222     22356799999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          167 AFEVVIREIYS  177 (220)
Q Consensus       167 l~~~l~~~~~~  177 (220)
                      ++++|.+.+.+
T Consensus       159 l~~~l~~~i~~  169 (171)
T 1upt_A          159 AMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999987753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.94  E-value=1.4e-25  Score=166.85  Aligned_cols=160  Identities=23%  Similarity=0.343  Sum_probs=123.5

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      +...+||+++|++|||||||++++.+..+. .+.+|.+..  ...+.+++  +.+.+||++|+..+...+..+++.++++
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   87 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            455799999999999999999999988543 344555532  33455553  6889999999999888889999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCH
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNV  164 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v  164 (220)
                      ++|+|++++.++..+..|+..+... .....|+++++||+|+....  ..++......     ..++.++++||+++.|+
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  165 (181)
T 1fzq_A           88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (181)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence            9999999999999998888776443 23568999999999987543  3333333221     22457899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027703          165 EAAFEVVIREIYS  177 (220)
Q Consensus       165 ~~l~~~l~~~~~~  177 (220)
                      +++|++|.+.+.+
T Consensus       166 ~~l~~~l~~~~~~  178 (181)
T 1fzq_A          166 QDGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999876643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.94  E-value=8.7e-26  Score=167.79  Aligned_cols=158  Identities=22%  Similarity=0.363  Sum_probs=123.3

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      .....+||+++|++|||||||+++|.+..+ ..+.+|.+..  ...+.+++  +.+.+||++|+..+...+..+++.+|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS--CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            344569999999999999999999999887 4444555533  34455554  788999999999988888999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCC
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTN  163 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~  163 (220)
                      +++|+|+++..++..+..|+..+.... ....|+++++||+|+..  ....++......     ..++.++++||+++.|
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g  169 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEG  169 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence            999999999999999998888876542 35689999999999865  334444444332     2345789999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          164 VEAAFEVVIRE  174 (220)
Q Consensus       164 v~~l~~~l~~~  174 (220)
                      +++++++|.+.
T Consensus       170 i~~l~~~l~~~  180 (181)
T 2h17_A          170 LCQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhh
Confidence            99999998753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2.3e-25  Score=166.28  Aligned_cols=157  Identities=22%  Similarity=0.366  Sum_probs=123.3

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..+||+++|++|||||||++++.+..+. .+.+|.+.  ....+.+++  +.+.+||++|+..+...+..+++.+|++++
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS--NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS--SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            4589999999999999999999988776 45556553  334455554  788999999999888888999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  166 (220)
                      |+|++++.++..+..|+..+.... ....|+++++||+|+..  ....++......     ..++.++++||+++.|+++
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  167 (187)
T 1zj6_A           90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  167 (187)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHH
Confidence            999999999999999988876542 24689999999999875  334455444432     2356899999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          167 AFEVVIREIY  176 (220)
Q Consensus       167 l~~~l~~~~~  176 (220)
                      ++++|.+.+.
T Consensus       168 l~~~l~~~~~  177 (187)
T 1zj6_A          168 GLEWMMSRLK  177 (187)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.94  E-value=1.6e-26  Score=172.34  Aligned_cols=162  Identities=21%  Similarity=0.429  Sum_probs=117.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC--cCCCCCcccceeeeeEEEEEe---CCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN--EFDSNSKATIGVEFQTQVVDI---DGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~--~~~~~~~~t~~~~~~~~~i~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~   88 (220)
                      .+||+++|++|||||||++++.+.  .+...+.+|.+.+.....+.+   ++..+.+.+||++|+..+...+..+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  455566677776655554433   235678999999999988888888889999


Q ss_pred             EEEEEEeCCCc-ccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC---HHHHHHHHHHhCCe----EEEeccCC
Q 027703           89 GALVVYDITRR-SSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS---TEEGKSLAEEEGLF----FMETSALD  160 (220)
Q Consensus        89 ~~i~v~d~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~  160 (220)
                      ++++|||.+++ .++..+..|+..+.... .+.|++++|||+|+...+...   .+++..++...+++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999987 47999999998876653 358999999999986533221   22344455455665    89999999


Q ss_pred             CC-CHHHHHHHHHHHHH
Q 027703          161 ST-NVEAAFEVVIREIY  176 (220)
Q Consensus       161 ~~-~v~~l~~~l~~~~~  176 (220)
                      +. ++.++++.+.+.+.
T Consensus       161 ~~~~~~~l~~~i~~~~~  177 (184)
T 2zej_A          161 ESDALAKLRKTIINESL  177 (184)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHh
Confidence            97 99999998887664

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.93  E-value=2.8e-26  Score=172.69  Aligned_cols=165  Identities=23%  Similarity=0.245  Sum_probs=118.5

Q ss_pred             CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEE--EeC-CeEEEEEEEecCCcchhhhhh--
Q 027703            6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVV--DID-GKEVKAQIWDTAGQERFRAVT--   80 (220)
Q Consensus         6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i--~~~-~~~~~~~~~d~~g~~~~~~~~--   80 (220)
                      .+...+...+||+++|++|||||||++++.+...+.   ++.+.......+  .+. +..+.+.+||++|+..+....  
T Consensus        12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   88 (196)
T 3llu_A           12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD   88 (196)
T ss_dssp             --------CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC
T ss_pred             CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh
Confidence            345566678999999999999999999988753332   333333332222  232 566789999999998876665  


Q ss_pred             -HHhhcCCcEEEEEEeCCCc--ccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC-------CCCCCHHHHHHHHH---
Q 027703           81 -SAYYRGAVGALVVYDITRR--SSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS-------IRDVSTEEGKSLAE---  147 (220)
Q Consensus        81 -~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~-------~~~~~~~~~~~~~~---  147 (220)
                       ..+++.++++++|||+++.  .++..+..|+..+... ....|+++++||+|+..       .+.+..+++..++.   
T Consensus        89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~  167 (196)
T 3llu_A           89 YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL  167 (196)
T ss_dssp             HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence             7899999999999999997  5566666666665433 34689999999999753       23344455667777   


Q ss_pred             -HhCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703          148 -EEGLFFMETSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       148 -~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                       ..++.|+++||++ .|++++|+.+.+.+
T Consensus       168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence             6678999999999 99999999998753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.93  E-value=2.7e-26  Score=172.34  Aligned_cols=158  Identities=19%  Similarity=0.332  Sum_probs=118.2

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ...+||+++|++|||||||++++.+..+.. +.+|.+.  ....+...+  +.+.+||++|+..+...+..+++.+++++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTE--EEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCce--eEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            346999999999999999999999887763 4455543  333444443  78899999999988888889999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVE  165 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~  165 (220)
                      +|+|++++.++..+..|+..+.... ....|+++++||+|+...  ...++......     ..++.++++||+++.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            9999999999999988888765432 346899999999998653  23333222211     123568999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          166 AAFEVVIREIY  176 (220)
Q Consensus       166 ~l~~~l~~~~~  176 (220)
                      +++++|.+.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.93  E-value=1.3e-24  Score=175.92  Aligned_cols=161  Identities=32%  Similarity=0.559  Sum_probs=140.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  233 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  233 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence            58999999999999999999999998888877775433 45667788889999999999999888888899999999999


Q ss_pred             EeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccC
Q 027703           94 YDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETSAL  159 (220)
Q Consensus        94 ~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  159 (220)
                      +|++++.++..+. .|+..+..... ..|+++++||+|+...            +.+..+++..++...++ +++++||+
T Consensus       234 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  312 (332)
T 2wkq_A          234 FSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  312 (332)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence            9999999999987 57777766544 6899999999998543            56788889999999887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027703          160 DSTNVEAAFEVVIREIY  176 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~~~  176 (220)
                      ++.|+++++++|.+.+.
T Consensus       313 ~~~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          313 TQRGLKTVFDEAIRAVL  329 (332)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            99999999999988764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=3.9e-25  Score=164.13  Aligned_cols=159  Identities=20%  Similarity=0.335  Sum_probs=122.9

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ...+||+++|++|||||||++++.+..+ ..+.+|.+..  ...+.+++  ..+.+||++|+..+...+..++..+++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4569999999999999999999998877 4445555533  34455554  78899999999988888889999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEEeccCCCCCHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFMETSALDSTNVE  165 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~  165 (220)
                      +|+|++++.++..+..|+..+.... ....|+++++||+|+...  ...++.......     .+++++++||+++.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999988888875543 356899999999998653  344444443322     23478999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          166 AAFEVVIREIYS  177 (220)
Q Consensus       166 ~l~~~l~~~~~~  177 (220)
                      +++++|.+.+.+
T Consensus       169 ~l~~~l~~~~~~  180 (183)
T 1moz_A          169 EGLDWLIDVIKE  180 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.93  E-value=7.2e-25  Score=160.56  Aligned_cols=153  Identities=18%  Similarity=0.209  Sum_probs=114.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh------hhhHHhhc--
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR------AVTSAYYR--   85 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~--   85 (220)
                      .++|+++|++|||||||+++|.+..+.....++.+.+...+.+.+++  ..+.+|||+|+..+.      .....++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            48999999999999999999999877666556655565666666665  578899999987653      23344554  


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE  165 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (220)
                      .++++++++|.++.   +....|+..+..   ...|+++++||+|+...+.+.. ++..++...+++++++||+++.|++
T Consensus        81 ~~~~~i~v~D~~~~---~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATAL---ERNLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCH---HHHHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCch---hHhHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            89999999999874   344456666544   2589999999999865444432 3567778888999999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          166 AAFEVVIREI  175 (220)
Q Consensus       166 ~l~~~l~~~~  175 (220)
                      ++|+++.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.88  E-value=1.2e-27  Score=181.13  Aligned_cols=163  Identities=31%  Similarity=0.562  Sum_probs=134.4

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      ....+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF  105 (204)
Confidence            34579999999999999999999999988877777664333 34556677778889999999998888888899999999


Q ss_pred             EEEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEe
Q 027703           91 LVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIR------------DVSTEEGKSLAEEEGL-FFMET  156 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~  156 (220)
                      ++|+|++++.++..+. .|+..+..... ..|+++++||+|+...+            .+..+++..++...+. +++++
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          106 LICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            9999999999999987 67666655433 68999999999986543            4555667778888787 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 027703          157 SALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~~  175 (220)
                      ||+++.|+++++++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999988654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.93  E-value=9.2e-26  Score=168.65  Aligned_cols=158  Identities=18%  Similarity=0.277  Sum_probs=123.7

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..+||+++|++|||||||++++.+..+.. +.+|.+.  ....+.+++  +.+.+||++|+..+...+..+++.+|++++
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            46999999999999999999998887654 4455543  334454543  688999999999888888888999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHhCCeEEEeccCCCCCHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-----EEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      |+|++++.++..+..|+..+.... ....|+++++||+|+....  ..++.....     ...+++++++||+++.|+++
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  173 (189)
T 2x77_A           96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVE  173 (189)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHHH
Confidence            999999999999988888765543 3568999999999986532  233322222     12345799999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          167 AFEVVIREIYS  177 (220)
Q Consensus       167 l~~~l~~~~~~  177 (220)
                      +++++.+.+.+
T Consensus       174 l~~~l~~~i~~  184 (189)
T 2x77_A          174 GMDWLVERLRE  184 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.92  E-value=7.4e-26  Score=177.26  Aligned_cols=169  Identities=27%  Similarity=0.352  Sum_probs=121.2

Q ss_pred             CCCCCceeeEEEEEECCC---------CCcHHHHHHHHhh---CcCCCCCcccc-eeeeeEEE--------------EEe
Q 027703            6 RGGGGEEYLFKIVLIGDS---------AVGKSNLLSRFAR---NEFDSNSKATI-GVEFQTQV--------------VDI   58 (220)
Q Consensus         6 ~~~~~~~~~~ki~ilG~~---------g~GKSTll~~l~~---~~~~~~~~~t~-~~~~~~~~--------------i~~   58 (220)
                      +.+...+..+||+++|.+         |||||||++++.+   ..+...+.+|. +.+.....              ..+
T Consensus        11 ~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~   90 (255)
T 3c5h_A           11 RENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE   90 (255)
T ss_dssp             CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----
T ss_pred             cCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc
Confidence            345556678999999999         9999999999999   56666666554 32222111              124


Q ss_pred             CCeEEEEEEEe-----------------------cCCcchhhhhhHHhhc---------------------CCcEEEEEE
Q 027703           59 DGKEVKAQIWD-----------------------TAGQERFRAVTSAYYR---------------------GAVGALVVY   94 (220)
Q Consensus        59 ~~~~~~~~~~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~   94 (220)
                      ++..+.+.+||                       +.|+..+...+..+++                     +++++++||
T Consensus        91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~  170 (255)
T 3c5h_A           91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI  170 (255)
T ss_dssp             -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred             CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence            56778899999                       4444444444445555                     699999999


Q ss_pred             eCCCc--ccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-hCCeEEEeccCCCCCHHHHHHH
Q 027703           95 DITRR--SSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        95 d~~~~--~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      |++++  .+|+.+..|+..+... .....|+++++||+|+...+.  .+++..++.. .++.++++||+++.|++++|++
T Consensus       171 D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~--v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~  248 (255)
T 3c5h_A          171 DVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY--IRDAHTFALSKKNLQVVETSARSNVNVDLAFST  248 (255)
T ss_dssp             ECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH--HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHH
T ss_pred             ECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH--HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHH
Confidence            99998  8999999999887654 334689999999999865433  3567777766 4789999999999999999999


Q ss_pred             HHHHHH
Q 027703          171 VIREIY  176 (220)
Q Consensus       171 l~~~~~  176 (220)
                      |.+.+.
T Consensus       249 l~~~l~  254 (255)
T 3c5h_A          249 LVQLID  254 (255)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            987653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.92  E-value=7.6e-25  Score=166.82  Aligned_cols=159  Identities=14%  Similarity=0.208  Sum_probs=113.2

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe-EEEEEEEecCCcchhhh-hhHHhhcCCc
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK-EVKAQIWDTAGQERFRA-VTSAYYRGAV   88 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~-~~~~~~~d~~g~~~~~~-~~~~~~~~~~   88 (220)
                      +...+||+++|++|||||||++++.+..+...+.++. ...  ..+.+++. .+.+.+||++|+..+.. .+..+++.++
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSS--AIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEE--EEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eee--EEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            3456899999999999999999999998887776443 222  23556543 57899999999998877 7788899999


Q ss_pred             EEEEEEeCCCcc-cHHHHHHHHHH-HHh--hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----------------
Q 027703           89 GALVVYDITRRS-SFDSVKRWLEE-LTT--HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----------------  147 (220)
Q Consensus        89 ~~i~v~d~~~~~-~~~~~~~~~~~-l~~--~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----------------  147 (220)
                      ++++|+|+++.. ++.....++.. +..  ......|+++++||+|+...+.  .++....+.                 
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~s~~  158 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--AKLIQQQLEKELNTLRVTRSAAPSTL  158 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--HHHHHHHHHHHHHHHHHHCC------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--HHHHHHHHHHHHHHHhccchhccccc
Confidence            999999998843 45555555444 332  1234689999999999875432  222111111                 


Q ss_pred             --------------------Hh--CCeEEEeccCCC------CCHHHHHHHHHHH
Q 027703          148 --------------------EE--GLFFMETSALDS------TNVEAAFEVVIRE  174 (220)
Q Consensus       148 --------------------~~--~~~~~~~Sa~~~------~~v~~l~~~l~~~  174 (220)
                                          ..  .+.|+++||+++      .|++++|++|.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                11  567999999999      9999999999865

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.92  E-value=1.2e-23  Score=162.02  Aligned_cols=168  Identities=20%  Similarity=0.127  Sum_probs=116.8

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc------hh---hh
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE------RF---RA   78 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~------~~---~~   78 (220)
                      +..++..+||+++|++|||||||+++|.+..+.....+..+.......+...+  ..+.+||++|+.      ..   ..
T Consensus        23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~  100 (228)
T 2qu8_A           23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMT  100 (228)
T ss_dssp             CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHH
Confidence            33345579999999999999999999999876533322222333333333343  678899999983      21   11


Q ss_pred             hhHHhhcCCcEEEEEEeCCCcccHHH--HHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHH---HHHHHHHHhC--C
Q 027703           79 VTSAYYRGAVGALVVYDITRRSSFDS--VKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTE---EGKSLAEEEG--L  151 (220)
Q Consensus        79 ~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~---~~~~~~~~~~--~  151 (220)
                      ....++..++++++|+|+++..++..  ...|+..+... ....|+++++||+|+...+.+..+   ++..++...+  +
T Consensus       101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
T 2qu8_A          101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPI  179 (228)
T ss_dssp             HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCE
T ss_pred             HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCc
Confidence            22345778899999999999877642  23455555443 236899999999999776666654   3555666655  7


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027703          152 FFMETSALDSTNVEAAFEVVIREIYSN  178 (220)
Q Consensus       152 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~  178 (220)
                      .++++||+++.|++++|++|.+.+.+.
T Consensus       180 ~~~~~SA~~g~gi~~l~~~l~~~i~~~  206 (228)
T 2qu8_A          180 KFSSFSTLTGVGVEQAKITACELLKND  206 (228)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             eEEEEecccCCCHHHHHHHHHHHHHHH
Confidence            899999999999999999999988653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.91  E-value=6.6e-24  Score=158.22  Aligned_cols=156  Identities=18%  Similarity=0.201  Sum_probs=121.9

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh------hhhHHhhc-
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR------AVTSAYYR-   85 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~-   85 (220)
                      ..++|+++|++|||||||+++|.+..+.....++.+.....+.+.+++  ..+.+||++|+..+.      ..+..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            468999999999999999999999876555556666666667777765  678899999987653      23445553 


Q ss_pred             -CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703           86 -GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV  164 (220)
Q Consensus        86 -~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (220)
                       .++++++++|.++   ++....|+..+..   ...|+++++||+|+...+.+. .++..++...+++++++|++++.|+
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence             5899999999864   5666667666654   357899999999986544443 3566778888899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027703          165 EAAFEVVIREIYS  177 (220)
Q Consensus       165 ~~l~~~l~~~~~~  177 (220)
                      +++++++.+.+.+
T Consensus       157 ~~l~~~i~~~~~~  169 (188)
T 2wjg_A          157 EELKKAISIAVKD  169 (188)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.91  E-value=1.3e-23  Score=168.67  Aligned_cols=159  Identities=20%  Similarity=0.275  Sum_probs=123.4

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCC---CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh-----hhhhHHhh
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDS---NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF-----RAVTSAYY   84 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~---~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~-----~~~~~~~~   84 (220)
                      ..+||+++|++|||||||++++.+...+.   .+.+|.+  ...+.+.+++ .+.+.+||++|+..+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~--~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--VEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCS--EEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccc--eEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            46899999999999999999998874332   2334444  3444555544 578999999999877     66778888


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC--CCCCcEEEEEecCCCCC--CCC----CCHHHHHHHHHHhC---CeE
Q 027703           85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHC--DTAVGRMLVGNKCDLDS--IRD----VSTEEGKSLAEEEG---LFF  153 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~v~~k~Dl~~--~~~----~~~~~~~~~~~~~~---~~~  153 (220)
                      +.++++++|+|+++..+++.+..|...+....  ....|+++++||+|+..  .+.    ...+++..++...+   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877755443221  34689999999999875  333    44567888888876   799


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 027703          154 METSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       154 ~~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                      +++||++ .++.+.|..+.+.+
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTT
T ss_pred             EEeeecC-ChHHHHHHHHHHHH
Confidence            9999999 88888888877654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.91  E-value=1.1e-23  Score=155.57  Aligned_cols=158  Identities=16%  Similarity=0.151  Sum_probs=119.1

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   90 (220)
                      ....++|+++|++|||||||++++.+..+...+.++.+.......+.+++.  .+.+||++|+..+...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            345689999999999999999999999888777766665555566667664  567899999988888888888999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC---------CeEEEeccCCC
Q 027703           91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG---------LFFMETSALDS  161 (220)
Q Consensus        91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~  161 (220)
                      ++|+|+++....... +++..+   .....|+++++||+|+...   ..++.........         +.++++||+++
T Consensus        83 i~v~d~~~~~~~~~~-~~l~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (178)
T 2lkc_A           83 ILVVAADDGVMPQTV-EAINHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK  155 (178)
T ss_dssp             EEEEETTCCCCHHHH-HHHHHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred             EEEEECCCCCcHHHH-HHHHHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence            999999885443332 222222   2246899999999998653   2333333333222         47899999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIREIYS  177 (220)
Q Consensus       162 ~~v~~l~~~l~~~~~~  177 (220)
                      .|+++++++|.+.+..
T Consensus       156 ~gv~~l~~~l~~~~~~  171 (178)
T 2lkc_A          156 EGLDHLLEMILLVSEM  171 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhhh
Confidence            9999999999988764

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.91  E-value=8.9e-25  Score=174.75  Aligned_cols=155  Identities=17%  Similarity=0.215  Sum_probs=114.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCC---CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh---hhHHhhcCCcE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDS---NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA---VTSAYYRGAVG   89 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~---~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~---~~~~~~~~~~~   89 (220)
                      ||+++|++|||||||++++.+..++.   ...+|++.....  +   +..+.+++|||+|++++..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v---~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F---STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E---CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E---ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999988765443   245676655543  2   2347899999999998863   45789999999


Q ss_pred             EEEEEeCCCc--ccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC-------CCCCHHHHHHHHHH----hCCeEEEe
Q 027703           90 ALVVYDITRR--SSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI-------RDVSTEEGKSLAEE----EGLFFMET  156 (220)
Q Consensus        90 ~i~v~d~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~  156 (220)
                      +++|||++++  ..+..+..|+..+... .++.|++++|||+|+...       |.+..+++.+++..    .++.|++|
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999987  2222233333434333 346899999999998753       33455556677764    57899999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH
Q 027703          157 SALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      ||++ .++.+.|..+.+.+..
T Consensus       155 SAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSST
T ss_pred             ccCC-CcHHHHHHHHHHHHHh
Confidence            9998 6899999999877643

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.90  E-value=6.4e-24  Score=156.64  Aligned_cols=154  Identities=22%  Similarity=0.212  Sum_probs=112.6

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh--------hhHHh
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------VTSAY   83 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------~~~~~   83 (220)
                      ..+||+++|++|||||||+++|.+..+.. ...++.+.+...+.+.+++.  .+.+||++|+.....        ....+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            35899999999999999999999986532 22334445555667777764  578999999854211        11245


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN  163 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (220)
                      ++.++++++|+|.++..++.. ..|+..+........|+++++||+|+.....       .++.....+++++||+++.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            789999999999999888764 4677776665555689999999999853211       11122456889999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027703          164 VEAAFEVVIREIY  176 (220)
Q Consensus       164 v~~l~~~l~~~~~  176 (220)
                      +++++++|.+.+.
T Consensus       153 v~~l~~~l~~~~~  165 (172)
T 2gj8_A          153 VDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987653

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.90  E-value=9.2e-23  Score=165.16  Aligned_cols=157  Identities=18%  Similarity=0.333  Sum_probs=117.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+|+|++|||||||+++|.+..+.... +|.+..  ...+...  .+.+.+|||+|+..+...+..+++.++++++|
T Consensus       165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV  239 (329)
T 3o47_A          165 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV  239 (329)
T ss_dssp             SEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE--EEEEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred             cceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE--EEEEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            479999999999999999999998865433 454433  3334443  47889999999999998999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l  167 (220)
                      ||+++..+|..+..|+..+.... ....|+++++||+|+....  ..++.......     .+++++++||+++.|++++
T Consensus       240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el  317 (329)
T 3o47_A          240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG  317 (329)
T ss_dssp             EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence            99999999999988887765433 3568999999999987533  33333222221     2346899999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          168 FEVVIREIYS  177 (220)
Q Consensus       168 ~~~l~~~~~~  177 (220)
                      |++|.+.+.+
T Consensus       318 ~~~l~~~l~~  327 (329)
T 3o47_A          318 LDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHh
Confidence            9999987643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.90  E-value=2.4e-23  Score=155.22  Aligned_cols=154  Identities=21%  Similarity=0.247  Sum_probs=115.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCC-----------cchhhhhhHHh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG-----------QERFRAVTSAY   83 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~   83 (220)
                      +||+++|++|||||||++++.+..+...+.++.+.....  +.+.    .+.+||+||           +..+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            689999999999999999999999887777765543333  3332    577899999           45555566666


Q ss_pred             hcC-CcEEEEEEeCCCcccHHHH-HHHHHH--------H-HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCe
Q 027703           84 YRG-AVGALVVYDITRRSSFDSV-KRWLEE--------L-TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLF  152 (220)
Q Consensus        84 ~~~-~~~~i~v~d~~~~~~~~~~-~~~~~~--------l-~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~  152 (220)
                      ++. ++++++++++.+..++..+ ..|...        + ........|+++++||+|+...+   .+++..++...+.+
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            666 7766667777777777776 445431        1 22222468999999999987543   55677788877764


Q ss_pred             -------EEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          153 -------FMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       153 -------~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                             ++++||+++.|+++++++|.+.+.+
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  184 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  184 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence                   7999999999999999999988865

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.90  E-value=6.9e-23  Score=153.55  Aligned_cols=158  Identities=18%  Similarity=0.197  Sum_probs=105.4

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCC----------cchhhhhh
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG----------QERFRAVT   80 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g----------~~~~~~~~   80 (220)
                      +...++|+++|++|||||||+++|.+..+.....++.+..........++   .+.+||++|          +..+...+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            34579999999999999999999999876555554443333333333333   578999999          55555566


Q ss_pred             HHhhcCC---cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCH--HHHHH-HHHHhCCeEE
Q 027703           81 SAYYRGA---VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVST--EEGKS-LAEEEGLFFM  154 (220)
Q Consensus        81 ~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~--~~~~~-~~~~~~~~~~  154 (220)
                      ..++..+   +++++|+|+++..++.... ++..+..   ...|+++++||+|+...+.+..  ++... +.....+.++
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI  172 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence            6676666   9999999999888877642 2222222   3579999999999875443221  22222 2223467899


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 027703          155 ETSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       155 ~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                      ++||+++.|+++++++|.+.+
T Consensus       173 ~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          173 LFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEccCCCCHHHHHHHHHHHh
Confidence            999999999999999998765

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.89  E-value=1.4e-22  Score=147.01  Aligned_cols=149  Identities=19%  Similarity=0.183  Sum_probs=104.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcch-------hhhhhHHhhcC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-------FRAVTSAYYRG   86 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~   86 (220)
                      +||+++|++|||||||++++.+..+.. ...++.+.+.....+..++.  .+.+||++|...       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            689999999999999999999987542 22233344445556666664  678999999876       34455667899


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHH
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVE  165 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  165 (220)
                      ++++++|+|.++..+...  .++......  ...|+++++||+|+....    +++..+. ..++ .++++||+++.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999988655433  222222221  357899999999986532    2333444 5566 79999999999999


Q ss_pred             HHHHHHHHH
Q 027703          166 AAFEVVIRE  174 (220)
Q Consensus       166 ~l~~~l~~~  174 (220)
                      ++++++.+.
T Consensus       151 ~l~~~l~~~  159 (161)
T 2dyk_A          151 ELLEAIWER  159 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.89  E-value=3.7e-22  Score=160.26  Aligned_cols=164  Identities=16%  Similarity=0.088  Sum_probs=124.0

Q ss_pred             CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccc-eeeeeEEEEEeCCeEEEEEEEecCCcchhh----------
Q 027703            9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATI-GVEFQTQVVDIDGKEVKAQIWDTAGQERFR----------   77 (220)
Q Consensus         9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~-~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~----------   77 (220)
                      .++.+.-.|+++|.+|||||||+|+|.+..+......+. +.....+..... ...++.+|||||+....          
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence            456677899999999999999999999998765444332 233333334333 14688899999985433          


Q ss_pred             hhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC--CeEEE
Q 027703           78 AVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG--LFFME  155 (220)
Q Consensus        78 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~--~~~~~  155 (220)
                      .....++..+|++++|+|+++..++.....|+..+..   ...|+++++||+|+...+....+....+....+  ..++.
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            4556778899999999999999888887766666654   357999999999986334445555666666654  78999


Q ss_pred             eccCCCCCHHHHHHHHHHHHH
Q 027703          156 TSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       156 ~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      +||+++.|++++++++.+.+.
T Consensus       161 vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSC
T ss_pred             EeCCCCCCHHHHHHHHHHhCc
Confidence            999999999999999998774

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.89  E-value=4e-23  Score=163.09  Aligned_cols=184  Identities=17%  Similarity=0.170  Sum_probs=137.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh------hhHHhh--c
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA------VTSAYY--R   85 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~   85 (220)
                      .++|+++|++|||||||+++|++..+.....++.+.+...+.+.+.+.  .+.+||+||+..+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            589999999999999999999999876666677777777777777664  578999999876544      444555  6


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE  165 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (220)
                      .+|++++|+|+++.   .....++..+...  ...|+++++||.|+...+..... ...+.+..+++++++|++++.|+.
T Consensus        81 ~~d~vi~v~D~~~~---~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           81 NADVIVDIVDSTCL---MRNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             CCSEEEEEEEGGGH---HHHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             CCcEEEEEecCCcc---hhhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence            89999999998774   2333344444333  22899999999997543333322 567777889999999999999999


Q ss_pred             HHHHHHHHHHHHH-hhhhhcCcchhhhccccceeeeeecCC
Q 027703          166 AAFEVVIREIYSN-ISRKVLNSDAYKAELSVNRVTLVKDGA  205 (220)
Q Consensus       166 ~l~~~l~~~~~~~-~~~~~~~h~~~~~~~~a~~~~~~~~G~  205 (220)
                      ++++++.+.+... .+..+..|....+...++++.-.-.+.
T Consensus       155 ~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~  195 (271)
T 3k53_A          155 ELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISELLRGT  195 (271)
T ss_dssp             HHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHHHhhc
Confidence            9999999988653 334566777777777777765544443

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.89  E-value=2.2e-22  Score=157.68  Aligned_cols=156  Identities=17%  Similarity=0.165  Sum_probs=119.7

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh------hhHHhh-
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA------VTSAYY-   84 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~------~~~~~~-   84 (220)
                      ...++|+++|.+|||||||+++|++..+.....++.+.....+.+...+  ..+.+||+||...+..      ....++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            3568999999999999999999999876655556666666666666554  6888999999876543      223444 


Q ss_pred             -cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703           85 -RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN  163 (220)
Q Consensus        85 -~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (220)
                       ..+|++++|+|+++..+.   ..|+..+..   ...|+++++||+|+...+.+.. ++..+....+++++++||+++.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence             589999999999885443   234444433   2589999999999865444442 36678888899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027703          164 VEAAFEVVIREIY  176 (220)
Q Consensus       164 v~~l~~~l~~~~~  176 (220)
                      +.++++++.+...
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.88  E-value=6.4e-23  Score=176.26  Aligned_cols=163  Identities=20%  Similarity=0.270  Sum_probs=122.4

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEE------EEEe--CCeEEEEEEEecCCcchhhhhhHH
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQ------VVDI--DGKEVKAQIWDTAGQERFRAVTSA   82 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~------~i~~--~~~~~~~~~~d~~g~~~~~~~~~~   82 (220)
                      +...+||+++|.+|||||||++++.+..+...+.+|.+......      .+.+  ++..+.+.+||++|+..+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            55679999999999999999999999998888888877655533      1222  234578999999999988888888


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC
Q 027703           83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST  162 (220)
Q Consensus        83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (220)
                      +++.++++++|+|+++.   +....|+..+..... ..|+++++||+|+...+.+..+++..++...+.+++++||+++.
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            99999999999998764   555677777776643 58999999999998778888888888888889999999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIREIYS  177 (220)
Q Consensus       163 ~v~~l~~~l~~~~~~  177 (220)
                      |++++++.+.+.+.+
T Consensus       194 gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          194 GVESIAKSLKSAVLH  208 (535)
T ss_dssp             -CTTHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999988765

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.88  E-value=1.3e-22  Score=159.91  Aligned_cols=153  Identities=21%  Similarity=0.192  Sum_probs=114.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh------hhhHHhhc--
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR------AVTSAYYR--   85 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~--   85 (220)
                      .++|+++|++|||||||+++|++........++.+.+...+.+  .. ...+.+||+||+..+.      .....++.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            5899999999999999999999986544444555554444444  33 4578899999987654      34455554  


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE  165 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (220)
                      .+|++++|+|+++..+   ...|...+..   ...|+++++||+|+...+.+. .++..+....+++++++||+++.|++
T Consensus        80 ~~d~vi~V~D~t~~e~---~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~  152 (272)
T 3b1v_A           80 RADSILNVVDATNLER---NLYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD  152 (272)
T ss_dssp             CCSEEEEEEEGGGHHH---HHHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred             CCCEEEEEecCCchHh---HHHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence            6999999999987543   3345444443   358999999999986544443 34567888889999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          166 AAFEVVIREIY  176 (220)
Q Consensus       166 ~l~~~l~~~~~  176 (220)
                      ++++++.+.+.
T Consensus       153 el~~~i~~~~~  163 (272)
T 3b1v_A          153 QVVKKAAHTTT  163 (272)
T ss_dssp             HHHHHHHHSCT
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.87  E-value=1.6e-21  Score=145.85  Aligned_cols=158  Identities=15%  Similarity=0.215  Sum_probs=107.4

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCC----------cchhhhh
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG----------QERFRAV   79 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g----------~~~~~~~   79 (220)
                      ++...+||+++|++|||||||+++|.+..+.... ++.+..........+.   .+.+||++|          +..+...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL   94 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence            3455689999999999999999999998744322 2222222222222222   467899999          4445555


Q ss_pred             hHHhhcCC---cEEEEEEeCCCcccHHHH--HHHHHHHHhhCCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHH-hCC
Q 027703           80 TSAYYRGA---VGALVVYDITRRSSFDSV--KRWLEELTTHCDTAVGRMLVGNKCDLDSIRD--VSTEEGKSLAEE-EGL  151 (220)
Q Consensus        80 ~~~~~~~~---~~~i~v~d~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~--~~~~~~~~~~~~-~~~  151 (220)
                      +..+++.+   +++++|+|.++..+....  ..|+..   .   ..|+++++||+|+.....  ...+++..++.. ..+
T Consensus        95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T 3pqc_A           95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY  168 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence            56666655   899999998876554433  233322   2   579999999999864322  223345555555 347


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          152 FFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       152 ~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      +++++||+++.|+++++++|.+.+.+
T Consensus       169 ~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          169 TIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             ceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            89999999999999999999987643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.87  E-value=2.4e-22  Score=157.24  Aligned_cols=151  Identities=16%  Similarity=0.133  Sum_probs=116.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh----------hhHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA----------VTSAYY   84 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~----------~~~~~~   84 (220)
                      .+|+++|.+|||||||+|+|++..+.....++.+.+...+.+.+.+.  .+.+||+||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999998766666677777777788877774  778999999875543          344556


Q ss_pred             --cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC
Q 027703           85 --RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST  162 (220)
Q Consensus        85 --~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (220)
                        ..+|++++|+|+++..+...+..+   +   .....|+++++||+|+...+.... +...+....+++++++||+++.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l---~~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---L---FELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---H---TTSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---H---HHcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              889999999999885444333222   2   223689999999999864333322 2345777789999999999999


Q ss_pred             CHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIRE  174 (220)
Q Consensus       163 ~v~~l~~~l~~~  174 (220)
                      |++++++++.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999875

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.86  E-value=4.2e-22  Score=151.97  Aligned_cols=144  Identities=18%  Similarity=0.284  Sum_probs=103.7

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCC---CcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC-
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSN---SKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG-   86 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~---~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~-   86 (220)
                      ....++|+++|++|||||||+++|.+..+...   +.++.+.         ......+.+||++|+..+...+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            44568999999999999999999999886542   2233221         1134577899999999888888888776 


Q ss_pred             ---CcEEEEEEeCC-CcccHHHHHHHHHHHHhh----CCCCCcEEEEEecCCCCCCCCCC------HHHHHHHHHHhCCe
Q 027703           87 ---AVGALVVYDIT-RRSSFDSVKRWLEELTTH----CDTAVGRMLVGNKCDLDSIRDVS------TEEGKSLAEEEGLF  152 (220)
Q Consensus        87 ---~~~~i~v~d~~-~~~~~~~~~~~~~~l~~~----~~~~~~~~~v~~k~Dl~~~~~~~------~~~~~~~~~~~~~~  152 (220)
                         ++++++|+|.+ +..++..+..|+..+...    .....|+++++||+|+...+.+.      .+++..+....+..
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence               89999999999 888999988888776543    34578999999999997655433      34456666666778


Q ss_pred             EEEeccCCCCC
Q 027703          153 FMETSALDSTN  163 (220)
Q Consensus       153 ~~~~Sa~~~~~  163 (220)
                      ++++|++++.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            89999998775

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.86  E-value=4e-25  Score=174.21  Aligned_cols=78  Identities=17%  Similarity=0.213  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHH-HHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREI-YSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~-~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.+|++.++|  ||++|+.+..++++.+.++. .++.+++++||+++++..+|||+++|++|+++.+|+++++
T Consensus       152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~  231 (275)
T 3gfo_A          152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV  231 (275)
T ss_dssp             HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            33478999999999999  99999999999999999887 4589999999999999999999999999999999998875


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       232 ~  232 (275)
T 3gfo_A          232 F  232 (275)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.86  E-value=1.2e-23  Score=170.73  Aligned_cols=177  Identities=18%  Similarity=0.153  Sum_probs=113.8

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecC----------C---cchhhhhhHHh
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA----------G---QERFRAVTSAY   83 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~----------g---~~~~~~~~~~~   83 (220)
                      ++++||||||||||++.|.|...           +..|.+.++|..+.-.-.+.+          +   ..+......+.
T Consensus        33 ~~llGpsGsGKSTLLr~iaGl~~-----------p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni  101 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAGFEQ-----------PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNI  101 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSSC-----------CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHH
T ss_pred             EEEECCCCchHHHHHHHHhcCCC-----------CCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHH
Confidence            79999999999999999999943           357788888765410000000          0   00001111111


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHh--hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccC
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRWLEELTT--HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSAL  159 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~  159 (220)
                      ......    .........+.+.++++.+..  .....+.-++.|.|+        .+..|++++.+|++.++|  +|++
T Consensus       102 ~~~l~~----~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~Q--------RValArAL~~~P~lLLLDEPts~L  169 (359)
T 3fvq_A          102 AYGLGN----GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQ--------RAALARALAPDPELILLDEPFSAL  169 (359)
T ss_dssp             HTTSTT----SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHH--------HHHHHHHHTTCCSEEEEESTTTTS
T ss_pred             HHHHHH----cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH--------HHHHHHHHHcCCCEEEEeCCcccC
Confidence            110000    000111122233334433321  112222222222222        334477999999999999  9999


Q ss_pred             CCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          160 DSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      |.....++++.+.++..+ +.+++++|||++++..+|||+++|++|+++..|+++++.
T Consensus       170 D~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~  227 (359)
T 3fvq_A          170 DEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELY  227 (359)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence            999999999999988766 899999999999999999999999999999999988753

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.85  E-value=2.5e-20  Score=152.59  Aligned_cols=162  Identities=19%  Similarity=0.187  Sum_probs=119.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh---------hhhHH
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR---------AVTSA   82 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~---------~~~~~   82 (220)
                      ...++++++|++|||||||+++|.+..+.....+..+.......+...+  ..+.+|||+|.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4568999999999999999999999874333222223333334444443  578899999974321         11223


Q ss_pred             hhcCCcEEEEEEeCCCcc--cHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCC
Q 027703           83 YYRGAVGALVVYDITRRS--SFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALD  160 (220)
Q Consensus        83 ~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (220)
                      +...++++++|+|+++..  ++.....|+..+..... ..|+++++||.|+....  ..+++..++...+++++.+||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE--NIKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH--HHHHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH--HHHHHHHHHHhcCCCeEEEeCCC
Confidence            456789999999998876  77887788888766443 68999999999986533  23456667777888999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREIYSN  178 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~~  178 (220)
                      +.|+++++++|.+.+...
T Consensus       320 g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999999988653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.85  E-value=1.1e-21  Score=155.11  Aligned_cols=154  Identities=16%  Similarity=0.145  Sum_probs=115.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh----------hhHHh
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA----------VTSAY   83 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~----------~~~~~   83 (220)
                      .++|+++|.+|||||||+|+|++..+.....++.+.+...+.+...+.  .+.+|||||...+..          ....+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            489999999999999999999998766666667677777777776654  567899999865541          22233


Q ss_pred             h--cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCC
Q 027703           84 Y--RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDS  161 (220)
Q Consensus        84 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (220)
                      +  ..+|++++|+|+++..+...+   ...+...   ..|+++++||+|+...+... .+...+....+++++.+||+++
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYL---TLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred             HhhcCCCEEEEEecCCChHHHHHH---HHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence            3  789999999999875444333   3333322   58999999999986433322 1245677778899999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIREIY  176 (220)
Q Consensus       162 ~~v~~l~~~l~~~~~  176 (220)
                      .|++++++++.+.+.
T Consensus       154 ~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          154 RGIEALKLAIDRYKA  168 (274)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999987654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.85  E-value=1e-23  Score=171.21  Aligned_cols=77  Identities=13%  Similarity=0.225  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.+|++.++|  ||++|+.+..++++.|.++..+ +.+++++||+++.+..+|||+++|++|+++++|+++++
T Consensus       172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev  251 (366)
T 3tui_C          172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV  251 (366)
T ss_dssp             HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred             HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            34488999999999999  9999999999999999988877 89999999999999999999999999999999998775

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.85  E-value=5.9e-21  Score=146.03  Aligned_cols=161  Identities=17%  Similarity=0.175  Sum_probs=105.0

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcC--CCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcc----------hhh
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEF--DSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQE----------RFR   77 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~--~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~----------~~~   77 (220)
                      +...++|+++|.+|||||||+++|.+..+  .....+..+.....  .... .....+.+|||||..          .+.
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY--FSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEE--EEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEE--EEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            34568999999999999999999999863  22222222222222  2232 233578899999942          234


Q ss_pred             hhhHHhhcC---CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC--HHHHHHHHHH----
Q 027703           78 AVTSAYYRG---AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS--TEEGKSLAEE----  148 (220)
Q Consensus        78 ~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~--~~~~~~~~~~----  148 (220)
                      .....++..   ++++++|+|.++..+... ..++..+..   ...|+++++||+|+.......  .++....+..    
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~  179 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA  179 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence            444455554   778999999987655333 233344433   357999999999986433211  1122223333    


Q ss_pred             ---hCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          149 ---EGLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       149 ---~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                         ...+++.+||+++.|+.+++++|.+.+..
T Consensus       180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence               45689999999999999999999988754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.84  E-value=5.8e-20  Score=146.86  Aligned_cols=155  Identities=19%  Similarity=0.152  Sum_probs=108.1

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcch--------hhhhhHHh
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQER--------FRAVTSAY   83 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~--------~~~~~~~~   83 (220)
                      ...+|+++|.+|||||||+|+|++..+..... +..+.....+.+...  ..++.+|||||...        +......+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            34679999999999999999999998764333 222222222333333  46889999999865        34455678


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHH-HHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH--hCCeEEEeccCC
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRWL-EELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE--EGLFFMETSALD  160 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~  160 (220)
                      ++.+|++++|+|+++..+...  .|+ ..+... ....|+++++||+|+...+.    +....+..  ....++++||++
T Consensus        84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~  156 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPED--ELVARALKPL-VGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALD  156 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG-TTTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTC
T ss_pred             HhcCCEEEEEEECCCCCChHH--HHHHHHHHhh-cCCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCC
Confidence            899999999999988765543  444 334332 23589999999999864322    01222222  234789999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREIY  176 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~  176 (220)
                      +.|++++++++.+.+.
T Consensus       157 g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          157 ERQVAELKADLLALMP  172 (301)
T ss_dssp             HHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHhcc
Confidence            9999999999987653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.84  E-value=2.3e-23  Score=170.16  Aligned_cols=77  Identities=16%  Similarity=0.225  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      +..|++++.+|++.++|  +|++|.....++++.|.++..+ +.+++++|||++++..+|||+++|++|+++..|+++++
T Consensus       142 VaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l  221 (381)
T 3rlf_A          142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL  221 (381)
T ss_dssp             HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence            44488999999999999  9999999999999999998876 89999999999999999999999999999999998875

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.84  E-value=2.7e-23  Score=163.27  Aligned_cols=78  Identities=19%  Similarity=0.243  Sum_probs=71.0

Q ss_pred             HHHHHHHHH------HhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCC
Q 027703          139 TEEGKSLAE------EEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSK  209 (220)
Q Consensus       139 ~~~~~~~~~------~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~  209 (220)
                      ...|++++.      +|++.++|  ||++|+.+..++++.+.++..+ +.+++++|||++++..+|||+++|++|+++.+
T Consensus       150 v~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~  229 (266)
T 4g1u_C          150 VQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC  229 (266)
T ss_dssp             HHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence            334789999      99999999  9999999999999999988877 47999999999999999999999999999999


Q ss_pred             CCCcccc
Q 027703          210 GSMMDFS  216 (220)
Q Consensus       210 g~~~~~~  216 (220)
                      |+++++.
T Consensus       230 g~~~~~~  236 (266)
T 4g1u_C          230 GTPEEVL  236 (266)
T ss_dssp             ECHHHHC
T ss_pred             cCHHHHh
Confidence            9988754

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.84  E-value=3.1e-20  Score=156.68  Aligned_cols=156  Identities=19%  Similarity=0.138  Sum_probs=98.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhh--------HHhh
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVT--------SAYY   84 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~   84 (220)
                      .+||+++|++|||||||+|+|.+.... ....++.+.+.....+.+++  +.+.+|||+|+..+...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            589999999999999999999998643 33334445555556666766  578899999986544332        3367


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703           85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV  164 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (220)
                      ..+|++++|+|.+++.++..+..+...+....  ..|+++|+||+|+......   +...+......+++.+||+++.|+
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI  385 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI  385 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence            89999999999999888764433333232222  5899999999998754432   222343333468999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          165 EAAFEVVIREIY  176 (220)
Q Consensus       165 ~~l~~~l~~~~~  176 (220)
                      ++++++|.+.+.
T Consensus       386 ~eL~~~i~~~~~  397 (476)
T 3gee_A          386 DTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999887

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.84  E-value=3.6e-20  Score=155.43  Aligned_cols=160  Identities=19%  Similarity=0.150  Sum_probs=114.2

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCc----------chhhhhh
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ----------ERFRAVT   80 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~----------~~~~~~~   80 (220)
                      +..+||+++|.+|||||||+|+|++..+. ....++.+.+.....+..++.  .+.+|||+|+          +.+....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            35699999999999999999999998764 333344445555556666664  5789999997          3333333


Q ss_pred             H-HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-H----hCCeEE
Q 027703           81 S-AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-E----EGLFFM  154 (220)
Q Consensus        81 ~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-~----~~~~~~  154 (220)
                      . .++..+|++++|+|+++..+++.. .|+..+..   ...|+++++||+|+...+....++....+. .    ..++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            2 467889999999999998888876 45555543   357899999999987655544444322222 2    357899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHH
Q 027703          155 ETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       155 ~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      .+||+++.|+.++++.+.+...+
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999988765

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.83  E-value=5.4e-21  Score=158.89  Aligned_cols=158  Identities=14%  Similarity=0.114  Sum_probs=112.8

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh-------hHH
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV-------TSA   82 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~-------~~~   82 (220)
                      ....++|+++|..|+|||||+++|++..+.. ...++.+.+.....+.+.+.. .+.+|||+|+..+...       ...
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence            4456899999999999999999999987643 333444555556666666542 7889999998765432       355


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC
Q 027703           83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST  162 (220)
Q Consensus        83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (220)
                      ++..+|++++|+|+...   .....|+..+...   ..|+++++||+|+...+..  +.+..+....+++++.+||+++.
T Consensus       110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~  181 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKK  181 (423)
T ss_dssp             HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTT
T ss_pred             HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCC
Confidence            78899999999998332   2334555555544   6899999999998765543  55666666678899999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIREIYS  177 (220)
Q Consensus       163 ~v~~l~~~l~~~~~~  177 (220)
                      |+++++++|.+.+.+
T Consensus       182 gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          182 GFDDIGKTISEILPG  196 (423)
T ss_dssp             STTTHHHHHHHHSCC
T ss_pred             CHHHHHHHHHHhhhh
Confidence            999999999988743

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.83  E-value=2.4e-22  Score=164.25  Aligned_cols=176  Identities=16%  Similarity=0.108  Sum_probs=114.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEE----------EEEEEecCCcchhhhhhHHhhc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEV----------KAQIWDTAGQERFRAVTSAYYR   85 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~----------~~~~~d~~g~~~~~~~~~~~~~   85 (220)
                      -++++||||||||||++.|.|...           +..|.+.+++..+          .+.+-+.. .........+...
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~~-----------p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~-l~~~ltv~eni~~  106 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLEE-----------PTEGRIYFGDRDVTYLPPKDRNISMVFQSYA-VWPHMTVYENIAF  106 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC-----------CSEEEEEETTEECTTSCGGGGTEEEEEC-------CCCHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC-----------CCceEEEECCEECCCCChhhCcEEEEecCcc-cCCCCCHHHHHHH
Confidence            379999999999999999999943           3567777776442          11111110 0000111111111


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCC
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDS  161 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~  161 (220)
                      ...    ..........+.+.+++..+.  ......+        ..|+....+....|++++.+|++.++|  +|++|.
T Consensus       107 ~~~----~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~--------~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~  174 (372)
T 1v43_A          107 PLK----IKKFPKDEIDKRVRWAAELLQIEELLNRYP--------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA  174 (372)
T ss_dssp             TCC------CCCHHHHHHHHHHHHHHTTCGGGTTSCT--------TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred             HHH----hcCCCHHHHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence            000    000111111222333333322  1112222        234444445566688999999999999  999999


Q ss_pred             CCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          162 TNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       162 ~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus       175 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l  229 (372)
T 1v43_A          175 KLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV  229 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999998766 89999999999999999999999999999999998776

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.83  E-value=1.9e-19  Score=147.34  Aligned_cols=160  Identities=18%  Similarity=0.113  Sum_probs=107.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch---------hhhhhHHhhc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER---------FRAVTSAYYR   85 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~   85 (220)
                      ..|+++|++|||||||+|+|.+..+.....+..+.++..+.+.+++  ..+.+|||+|...         +... ...+.
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~  256 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAK  256 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGG
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHH
Confidence            3499999999999999999999887554444555566677888887  4568899999622         2222 23467


Q ss_pred             CCcEEEEEEeCCCcc--cHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC-CCHHHHHHHHHHh---CCeEEEeccC
Q 027703           86 GAVGALVVYDITRRS--SFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD-VSTEEGKSLAEEE---GLFFMETSAL  159 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~-~~~~~~~~~~~~~---~~~~~~~Sa~  159 (220)
                      .+|.+++|+|.+++.  ....+..+...+........|+++|+||.|+..... ...+.+..+....   +..++.+|++
T Consensus       257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~  336 (364)
T 2qtf_A          257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISAL  336 (364)
T ss_dssp             GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTT
T ss_pred             hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence            899999999998876  455555555555544445689999999999864220 0011232333443   3467889999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027703          160 DSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~~~~  177 (220)
                      ++.|+++++++|.+.+..
T Consensus       337 ~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          337 KRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHhcc
Confidence            999999999999987765

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.83  E-value=1.4e-22  Score=164.89  Aligned_cols=77  Identities=18%  Similarity=0.228  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.+|++.++|  +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus       149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l  228 (353)
T 1oxx_K          149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL  228 (353)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            34478999999999999  9999999999999999998765 89999999999999999999999999999999998775

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.82  E-value=1.2e-19  Score=152.98  Aligned_cols=161  Identities=19%  Similarity=0.151  Sum_probs=117.7

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcC-CCCCcccceeeeeEEEEEeCCeEEEEEEEecCC----------cchhhhh
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEF-DSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG----------QERFRAV   79 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g----------~~~~~~~   79 (220)
                      .+..+||+++|.+|+|||||+++|.+... .....++.+.+.....+..++.  .+.+|||+|          ++.+...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            34568999999999999999999997752 2233344444444556666664  678999999          4555544


Q ss_pred             hH-HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-----CCeE
Q 027703           80 TS-AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-----GLFF  153 (220)
Q Consensus        80 ~~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-----~~~~  153 (220)
                      .. .+++.++++++|+|+++....... .|+..+..   ...|+++++||+|+...+....+++...+.+.     .+++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~~-~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence            43 467889999999999886554432 34444433   35799999999999876776677766666654     5789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHH
Q 027703          154 METSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       154 ~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      +++||+++.|++++++++.+.+.+
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHH
Confidence            999999999999999999988765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.82  E-value=1.8e-22  Score=159.54  Aligned_cols=77  Identities=14%  Similarity=0.196  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhh--hhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISR--KVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~--~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      ...|++++.++++.++|  +|++|+.+...+++.|.++..++.++  +++||+++++..+||++++|++|+++..|++++
T Consensus       170 v~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  249 (279)
T 2ihy_A          170 VMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVED  249 (279)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHH
T ss_pred             HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            34488999999999999  99999999999999998887668899  999999999999999999999999999988766


Q ss_pred             c
Q 027703          215 F  215 (220)
Q Consensus       215 ~  215 (220)
                      +
T Consensus       250 ~  250 (279)
T 2ihy_A          250 I  250 (279)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.82  E-value=4.2e-20  Score=149.84  Aligned_cols=158  Identities=18%  Similarity=0.157  Sum_probs=116.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----hhhhhHHhh---cCC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----FRAVTSAYY---RGA   87 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----~~~~~~~~~---~~~   87 (220)
                      .+|+++|.+|||||||+++|++..+.....+..+..+..+.+.+++. ..+.+||+||+..    ...+...++   ..+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            46899999999999999999987643322232334444555666542 4788999999643    222333444   459


Q ss_pred             cEEEEEEeCCC---cccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC--CeEEEeccCC
Q 027703           88 VGALVVYDITR---RSSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG--LFFMETSALD  160 (220)
Q Consensus        88 ~~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  160 (220)
                      +++++|+|+++   +.+++.+..|+.++..+..  ...|+++++||+|+...+    +....+.....  ..++.+||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7889999889888877642  468999999999986422    34455656555  6889999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREIYS  177 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~  177 (220)
                      +.|+++++++|.+.+.+
T Consensus       314 g~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          314 REGLRELLFEVANQLEN  330 (342)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999988754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.82  E-value=3.6e-19  Score=137.84  Aligned_cols=165  Identities=15%  Similarity=0.117  Sum_probs=105.0

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcc--cceeeeeEEEEEeCCeEEEEEEEecCCcch-----------h
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKA--TIGVEFQTQVVDIDGKEVKAQIWDTAGQER-----------F   76 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~--t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-----------~   76 (220)
                      .....+||+++|++|||||||+++|++..+.....+  +.+.......+.+++  ..+.+|||||...           +
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence            345579999999999999999999999988766655  444545555566666  4678999999542           2


Q ss_pred             hhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC--CCCCcEEEEEecCCCCCCCCCC------HHHHHHHHHH
Q 027703           77 RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC--DTAVGRMLVGNKCDLDSIRDVS------TEEGKSLAEE  148 (220)
Q Consensus        77 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~v~~k~Dl~~~~~~~------~~~~~~~~~~  148 (220)
                      .......++.++++++|+|++......  ..++..+....  ....|+++++||.|+...+.+.      .+....++..
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            223334556789999999987644421  12333322111  1135899999999986544333      2356777788


Q ss_pred             hCCeEEEeccCC-----CCCHHHHHHHHHHHHHHH
Q 027703          149 EGLFFMETSALD-----STNVEAAFEVVIREIYSN  178 (220)
Q Consensus       149 ~~~~~~~~Sa~~-----~~~v~~l~~~l~~~~~~~  178 (220)
                      .+..++.++...     ..++.++++.+.+.+.++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            887777765543     368888888888877664

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.82  E-value=1.7e-19  Score=152.30  Aligned_cols=153  Identities=25%  Similarity=0.256  Sum_probs=114.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc-hhh--------hhhHHh
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE-RFR--------AVTSAY   83 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~-~~~--------~~~~~~   83 (220)
                      .++|+++|++|||||||+|+|.+..+. ....++.+.+.....+.+++  ..+.+|||+|.. .+.        .....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            389999999999999999999998654 33334445556667777776  467899999986 432        123467


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN  163 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (220)
                      +..+|++++|+|++++.+++... ++..+     ...|+++++||+|+...  ...++...+. ..+.+++.+||+++.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence            78999999999999988876642 33322     25789999999998642  3445544443 2346899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027703          164 VEAAFEVVIREIYS  177 (220)
Q Consensus       164 v~~l~~~l~~~~~~  177 (220)
                      +++++++|.+.+..
T Consensus       392 i~eL~~~l~~~~~~  405 (482)
T 1xzp_A          392 LEKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987653

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.82  E-value=3.5e-22  Score=154.81  Aligned_cols=77  Identities=17%  Similarity=0.218  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.+|++.++|  +|++|+.+...+++.|.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       148 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  226 (240)
T 1ji0_A          148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL  226 (240)
T ss_dssp             HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred             HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            34477999999999999  999999999999999988866689999999999999999999999999999998887665

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.82  E-value=1.3e-22  Score=164.70  Aligned_cols=77  Identities=14%  Similarity=0.182  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.+|++.++|  +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus       154 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l  233 (355)
T 1z47_A          154 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV  233 (355)
T ss_dssp             HHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            33488999999999999  9999999999999999998766 89999999999999999999999999999999998775

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.82  E-value=1.1e-22  Score=159.28  Aligned_cols=76  Identities=22%  Similarity=0.254  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..|++++.+|++.++|  +|++|+.+..++++.+.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  246 (263)
T 2olj_A          169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL  246 (263)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            3378999999999999  999999999999999988876689999999999999999999999999999999988765

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.82  E-value=2e-22  Score=164.87  Aligned_cols=77  Identities=16%  Similarity=0.207  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.+|++.++|  +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus       148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l  227 (372)
T 1g29_1          148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV  227 (372)
T ss_dssp             HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence            34488999999999999  9999999999999999998766 89999999999999999999999999999999998775

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.82  E-value=1.9e-22  Score=164.11  Aligned_cols=77  Identities=13%  Similarity=0.152  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.+|++.++|  +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus       142 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l  221 (359)
T 2yyz_A          142 VALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV  221 (359)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            34488999999999999  9999999999999999998766 89999999999999999999999999999999998775

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.82  E-value=3.8e-22  Score=156.17  Aligned_cols=76  Identities=12%  Similarity=0.166  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~  214 (220)
                      ...|++++.+|++.++|  +|++|+.+..++++.+.++..++.+++++||+++++..+||++++|++|+++..|++++
T Consensus       162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            34478999999999999  99999999999999998887668999999999999999999999999999999998876

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.81  E-value=2.3e-22  Score=157.68  Aligned_cols=76  Identities=18%  Similarity=0.220  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..|++++.+|++.++|  +|++|+.+...+++.+.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       163 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  240 (262)
T 1b0u_A          163 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV  240 (262)
T ss_dssp             HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            3488999999999999  999999999999999988866689999999999999999999999999999999988765

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.81  E-value=6.7e-22  Score=152.74  Aligned_cols=76  Identities=21%  Similarity=0.243  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..|++++.+|++.++|  +|++|+.+..++++.+.++..+ +.+++++||+++.+ .+||++++|++|+++..++++++.
T Consensus       155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~~  233 (235)
T 3tif_A          155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGFD  233 (235)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence            3488999999999999  9999999999999999988766 89999999999965 789999999999999999887754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.81  E-value=1.7e-22  Score=156.33  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..|++++.+|++.++|  +|++|+.+...+++.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       136 ~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  214 (240)
T 2onk_A          136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL  214 (240)
T ss_dssp             HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            3488999999999999  9999999999999999988765 89999999999999999999999999999999988765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.81  E-value=3.4e-22  Score=157.12  Aligned_cols=176  Identities=19%  Similarity=0.172  Sum_probs=112.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE-----EEEecCCcc----hhhhhhHHhhcC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA-----QIWDTAGQE----RFRAVTSAYYRG   86 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~-----~~~d~~g~~----~~~~~~~~~~~~   86 (220)
                      .++++|+||||||||++.|.|..           ++..|.+.+++..+.-     .+--.++..    ..........-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~-----------~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~  103 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI-----------EPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA  103 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC-----------CCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHH
Confidence            47999999999999999999984           3356777777754210     000111110    001111111110


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHH----hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCC
Q 027703           87 AVGALVVYDITRRSSFDSVKRWLEELT----THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALD  160 (220)
Q Consensus        87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~  160 (220)
                      ...    . .......+.+.+++..+.    ......+.-++.|.|        +....+++++.++++.++|  +|++|
T Consensus       104 ~~~----~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~--------qRv~lAraL~~~p~lllLDEPts~LD  170 (266)
T 2yz2_A          104 VKN----F-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEK--------RRVAIASVIVHEPDILILDEPLVGLD  170 (266)
T ss_dssp             TTT----T-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHH--------HHHHHHHHHTTCCSEEEEESTTTTCC
T ss_pred             HHh----c-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHH--------HHHHHHHHHHcCCCEEEEcCccccCC
Confidence            000    0 111222334444444321    111121211222222        2234477999999999999  99999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          161 STNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      +.+...+++.+.++..++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus       171 ~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  225 (266)
T 2yz2_A          171 REGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF  225 (266)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999988876689999999999999999999999999999988887664

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.81  E-value=1.7e-22  Score=164.60  Aligned_cols=77  Identities=16%  Similarity=0.204  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.+|++.++|  +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus       142 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~  221 (362)
T 2it1_A          142 VAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV  221 (362)
T ss_dssp             HHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            33488999999999999  9999999999999999998765 89999999999999999999999999999999998775

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.81  E-value=1.5e-22  Score=158.10  Aligned_cols=76  Identities=17%  Similarity=0.299  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ..|++++.+|++.++|  +|++|+.+...+++.|.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus       156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  233 (256)
T 1vpl_A          156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL  233 (256)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred             HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHH
Confidence            3477999999999999  999999999999999988866689999999999999999999999999999998887765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.81  E-value=8.9e-19  Score=147.05  Aligned_cols=173  Identities=24%  Similarity=0.182  Sum_probs=114.2

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh-----------
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV-----------   79 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~-----------   79 (220)
                      +..+|++++|++|||||||+|+|.+..+. ....++.+.+...+.+.+++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            34699999999999999999999998653 222334445555677878875  5678999997432211           


Q ss_pred             -hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-H----HhCCeE
Q 027703           80 -TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-E----EEGLFF  153 (220)
Q Consensus        80 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-~----~~~~~~  153 (220)
                       ...++..++++++++|+++..+++.. .+...+..   ...|+++++||.|+...+....++....+ .    ....++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence             13456779999999999887776653 22222222   35789999999998754443344332222 2    235689


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhh
Q 027703          154 METSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKA  191 (220)
Q Consensus       154 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~  191 (220)
                      +.+||+++.|++++++.+.+...+ ....+.|+.++..
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~-~~~~i~t~~ln~~  368 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYAS-YTTKVPSSAINSA  368 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHH-HTCCCCHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh-hcccCCHHHHHHH
Confidence            999999999999999999987755 3334455555543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.80  E-value=1e-18  Score=146.65  Aligned_cols=153  Identities=22%  Similarity=0.282  Sum_probs=103.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch---------hhhhhHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER---------FRAVTSAYY   84 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~   84 (220)
                      .+|+++|.+|||||||+|+|.+.... ....++.+.+...+.+.+++.  .+.+|||+|+..         +......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999988754 233455556666777777775  568899999753         233456688


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHH-HHHHHHhCC-eEEEeccCCCC
Q 027703           85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEG-KSLAEEEGL-FFMETSALDST  162 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~  162 (220)
                      +.+|++++|+|.++..+...  .++..+...  ...|+++++||+|+...  . ..++ ..+. ..++ .++.+||+++.
T Consensus        80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~  151 (439)
T 1mky_A           80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNI  151 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence            99999999999988666543  222222211  25789999999997531  0 1222 3333 4555 68899999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIREIYS  177 (220)
Q Consensus       163 ~v~~l~~~l~~~~~~  177 (220)
                      |+.++++++.+.+.+
T Consensus       152 gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          152 NLDTMLETIIKKLEE  166 (439)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhccc
Confidence            999999999988764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.80  E-value=3e-19  Score=139.91  Aligned_cols=170  Identities=14%  Similarity=0.130  Sum_probs=107.0

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCc-CCCCCccc-ceeeeeEEEEEeCCeEEEEEEEecCCcchhhh---------
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNE-FDSNSKAT-IGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA---------   78 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~-~~~~~~~t-~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~---------   78 (220)
                      +....++|+|+|++|||||||+++|++.. +.....++ .+.....+.+...+  ..+.+|||||...+..         
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence            34456999999999999999999999887 44444443 44444445555555  4678999999765422         


Q ss_pred             --hhHHhhcCCcEEEEEEeCCCcccH-HHHHHHHHHHHhhCCCCCcEEEEEe-cCCCCCCCCCCH-------HHHHHHHH
Q 027703           79 --VTSAYYRGAVGALVVYDITRRSSF-DSVKRWLEELTTHCDTAVGRMLVGN-KCDLDSIRDVST-------EEGKSLAE  147 (220)
Q Consensus        79 --~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~v~~-k~Dl~~~~~~~~-------~~~~~~~~  147 (220)
                        ....+++.+|++++|+|++..... ..+..++..+.... ...|.+++.| |.|+... ....       .++..++.
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence              122366889999999999862221 11222332221111 1235555555 9998742 1111       22444566


Q ss_pred             HhCCeE-----EEeccCCCCCHHHHHHHHHHHHHHHhhhhh
Q 027703          148 EEGLFF-----METSALDSTNVEAAFEVVIREIYSNISRKV  183 (220)
Q Consensus       148 ~~~~~~-----~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~  183 (220)
                      ..+..+     +.+||+++.|+.++|+++.+.+..+....+
T Consensus       174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~  214 (260)
T 2xtp_A          174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHY  214 (260)
T ss_dssp             HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcC
Confidence            555432     569999999999999999998876543344

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.79  E-value=4.4e-22  Score=161.39  Aligned_cols=77  Identities=19%  Similarity=0.259  Sum_probs=71.0

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..|++++.+|++.++|  +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++.
T Consensus       137 alAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~  216 (348)
T 3d31_A          137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF  216 (348)
T ss_dssp             HHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred             HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            3478999999999999  9999999999999999988776 899999999999999999999999999999999987753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.79  E-value=5.9e-22  Score=152.04  Aligned_cols=71  Identities=23%  Similarity=0.263  Sum_probs=64.6

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCC
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS  211 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~  211 (220)
                      ..|++++.+|++.++|  +|++|+.+...+++.+.++..++.+++++||+++.+ .+||++++|++|+++.+|+
T Consensus       150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred             HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence            3378999999999999  999999999999999988876689999999999998 7999999999999988775

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.79  E-value=1.1e-18  Score=142.10  Aligned_cols=116  Identities=18%  Similarity=0.250  Sum_probs=97.2

Q ss_pred             EEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhC-CCCCcEEEEEecCC
Q 027703           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITR----------RSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCD  130 (220)
Q Consensus        62 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~D  130 (220)
                      .+.+.+||++|+..++..|..++++++++++|+|+++          ..++.....|+..+.... ..+.|+++++||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            4789999999999999999999999999999999998          467888888888876532 25689999999999


Q ss_pred             CCCCC---------------CCCHHHHHHHHH-----------HhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          131 LDSIR---------------DVSTEEGKSLAE-----------EEGLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       131 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      +...+               ....+++..++.           ..++.+++|||+++.|+.++|+++.+.+.+
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence            85322               356788888887           346778899999999999999999988764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.79  E-value=3.2e-21  Score=149.93  Aligned_cols=77  Identities=13%  Similarity=0.124  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhC-------CeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          140 EEGKSLAEEEG-------LFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       140 ~~~~~~~~~~~-------~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ..+++++.+++       +.++|  +|++|+.+...+++.+.++..++.+++++||+++.+..+||++++|++|+++..|
T Consensus       136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  215 (249)
T 2qi9_C          136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG  215 (249)
T ss_dssp             HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred             HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence            34789999999       99999  9999999999999999888666889999999999999999999999999999988


Q ss_pred             CCcccc
Q 027703          211 SMMDFS  216 (220)
Q Consensus       211 ~~~~~~  216 (220)
                      +++++.
T Consensus       216 ~~~~~~  221 (249)
T 2qi9_C          216 RREEVL  221 (249)
T ss_dssp             EHHHHS
T ss_pred             CHHHHh
Confidence            877653

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.79  E-value=7.9e-19  Score=132.96  Aligned_cols=160  Identities=13%  Similarity=0.128  Sum_probs=98.9

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----------hhhhhH
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----------FRAVTS   81 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----------~~~~~~   81 (220)
                      ....+++++|++|||||||+++|.+..+.....++.+.....+.+.+.+   .+.+||++|...          +.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            4458999999999999999999999874433333433333333333333   467899999742          122222


Q ss_pred             Hhh---cCCcEEEEEEeCCCcccHHH--HHHHHHHHHhhCCCCCcEEEEEecCCCCCCC--CCCHHHHHHHHHHhCC--e
Q 027703           82 AYY---RGAVGALVVYDITRRSSFDS--VKRWLEELTTHCDTAVGRMLVGNKCDLDSIR--DVSTEEGKSLAEEEGL--F  152 (220)
Q Consensus        82 ~~~---~~~~~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~--~~~~~~~~~~~~~~~~--~  152 (220)
                      .++   ..++++++++|.++..++..  +..|+   ..   ...|.++++||.|+....  ......+++++.+++.  .
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~  174 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  174 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence            333   46788999999988766543  22222   11   357888899999975321  1124566677777764  4


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 027703          153 FMETSALDSTNVEAAFEVVIREIYSNIS  180 (220)
Q Consensus       153 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  180 (220)
                      ++++|++++.++++++++|.+...++.+
T Consensus       175 ~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          175 VETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             eEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            5569999999999999999988765433

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.78  E-value=3.7e-19  Score=149.61  Aligned_cols=153  Identities=17%  Similarity=0.180  Sum_probs=103.0

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhh--------HHh
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVT--------SAY   83 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~--------~~~   83 (220)
                      ..+||+++|++|||||||+|+|.+..+.. ...++.+.+.....+.+++  ..+.+|||+|...+...+        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            35899999999999999999999876542 3334444444445666666  467899999975443222        235


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN  163 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (220)
                      +..+|++++|+|.+++.+... ..++..+.     ..|+++++||+|+.......  ....+.  ...+++.+|++++.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            688999999999998777655 34444432     26899999999987544322  100111  356789999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027703          164 VEAAFEVVIREIYS  177 (220)
Q Consensus       164 v~~l~~~l~~~~~~  177 (220)
                      +++++++|.+.+..
T Consensus       371 i~eL~~~i~~~~~~  384 (462)
T 3geh_A          371 IDSLETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.78  E-value=6.6e-19  Score=139.13  Aligned_cols=161  Identities=17%  Similarity=0.226  Sum_probs=90.1

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCC-CC-------cccceeeeeEEEEEeCCeEEEEEEEecCCcch------
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDS-NS-------KATIGVEFQTQVVDIDGKEVKAQIWDTAGQER------   75 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~-------~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~------   75 (220)
                      ++...++|+++|.+|+|||||+|+|++..... .+       .+|.+.......+..++..+.+.+|||||...      
T Consensus         4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~   83 (274)
T 3t5d_A            4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN   83 (274)
T ss_dssp             ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred             cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence            34567999999999999999999987765433 33       45555555555555566667999999999732      


Q ss_pred             -hhhhh-------HHhhc-------------CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703           76 -FRAVT-------SAYYR-------------GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI  134 (220)
Q Consensus        76 -~~~~~-------~~~~~-------------~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~  134 (220)
                       +....       ..++.             .+|+++++++.+.......-..++..+..    ..|+++|+||.|+...
T Consensus        84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence             12111       22222             26788888876553322222233444432    6899999999997532


Q ss_pred             CCCC--HHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703          135 RDVS--TEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      ....  .......+...++.++.+|+.++.++.+++++|.+.
T Consensus       160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          160 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            2111  122444555678899999999999999999887754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.78  E-value=8.6e-19  Score=130.97  Aligned_cols=116  Identities=19%  Similarity=0.348  Sum_probs=85.8

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCC---CcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC-
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSN---SKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG-   86 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~---~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~-   86 (220)
                      ....++|+++|++|||||||+++|.+..+...   ..++.+         .+...+.+.+||++|+..+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            34568999999999999999999999876542   111111         11133567899999998877766666655 


Q ss_pred             ---CcEEEEEEeCC-CcccHHHHHHHHHHHHhh----CCCCCcEEEEEecCCCCCCC
Q 027703           87 ---AVGALVVYDIT-RRSSFDSVKRWLEELTTH----CDTAVGRMLVGNKCDLDSIR  135 (220)
Q Consensus        87 ---~~~~i~v~d~~-~~~~~~~~~~~~~~l~~~----~~~~~~~~~v~~k~Dl~~~~  135 (220)
                         ++++++|+|++ +..++..+..|+..+...    .....|+++++||+|+...+
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence               89999999999 888999888888775433    33568999999999987544

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.78  E-value=1.5e-17  Score=138.18  Aligned_cols=161  Identities=17%  Similarity=0.104  Sum_probs=113.2

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEE-------------------Ee---CCeEEEEEE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVV-------------------DI---DGKEVKAQI   67 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i-------------------~~---~~~~~~~~~   67 (220)
                      ++.+.++|+++|.+|+|||||+++|++........    ........                   ..   ......+.+
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG----YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF   79 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE----EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC----ccccceeeccccccccceecccccccccccccccccceEEE
Confidence            44567999999999999999999999864433211    00000000                   00   112368899


Q ss_pred             EecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CHHHHHHH
Q 027703           68 WDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--STEEGKSL  145 (220)
Q Consensus        68 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~~~~~~~  145 (220)
                      |||||+..+.......+..+|++++|+|+++..++....+++..+....  ..|+++++||+|+......  ..++...+
T Consensus        80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~  157 (403)
T 3sjy_A           80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQF  157 (403)
T ss_dssp             EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence            9999999998888889999999999999998876777777766655442  2478999999998643211  11122222


Q ss_pred             HHH---hCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          146 AEE---EGLFFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       146 ~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      +..   .+++++.+||+++.|+.+++++|.+.+.
T Consensus       158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            222   1568999999999999999999987653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.78  E-value=3.7e-18  Score=136.49  Aligned_cols=155  Identities=19%  Similarity=0.132  Sum_probs=103.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcc-h--------hhhhhHHh
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQE-R--------FRAVTSAY   83 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~-~--------~~~~~~~~   83 (220)
                      ..+|+++|++|||||||+|+|.+..+..... +..+.....+.+..++  ..+.+|||||.. .        +.......
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            3579999999999999999999987643222 2222222233333333  578899999986 2        22233456


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCC
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDST  162 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (220)
                      +..+|++++|+|.++ -+  ....++.....  ....|+++++||.|+...+....+....+....+. .++.+||+++.
T Consensus        86 l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~  160 (301)
T 1ega_A           86 IGDVELVIFVVEGTR-WT--PDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL  160 (301)
T ss_dssp             CCCEEEEEEEEETTC-CC--HHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred             HhcCCEEEEEEeCCC-CC--HHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence            788999999999876 33  22233333222  23579999999999764221122233444444455 68899999999


Q ss_pred             CHHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIREI  175 (220)
Q Consensus       163 ~v~~l~~~l~~~~  175 (220)
                      ++.++++.+.+.+
T Consensus       161 ~v~~l~~~i~~~l  173 (301)
T 1ega_A          161 NVDTIAAIVRKHL  173 (301)
T ss_dssp             THHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999998654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.77  E-value=1.1e-17  Score=139.15  Aligned_cols=164  Identities=17%  Similarity=0.142  Sum_probs=102.3

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCc---CCCCCcc--cceeeeeEEEEEe-------------C--C----eEEEEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNE---FDSNSKA--TIGVEFQTQVVDI-------------D--G----KEVKAQ   66 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~---~~~~~~~--t~~~~~~~~~i~~-------------~--~----~~~~~~   66 (220)
                      +.+.++|+++|..++|||||+++|.+..   +..+..+  |+........+..             +  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            4467999999999999999999998653   3333333  3332222222211             1  1    136889


Q ss_pred             EEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC--CCHHHHHH
Q 027703           67 IWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD--VSTEEGKS  144 (220)
Q Consensus        67 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~--~~~~~~~~  144 (220)
                      +||+||+..+..........+|++++|+|+++........+.+..+...  ...|+++++||+|+.....  ...++...
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~~  162 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL--GIDKIIIVQNKIDLVDEKQAEENYEQIKE  162 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc--CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence            9999999888776666677889999999998643111112222222222  2247899999999875443  23455666


Q ss_pred             HHHH---hCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          145 LAEE---EGLFFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       145 ~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      ++..   .+++++.+||+++.|+.+++++|.+.+.
T Consensus       163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            6654   3678999999999999999999887543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.77  E-value=4e-18  Score=144.38  Aligned_cols=158  Identities=14%  Similarity=0.131  Sum_probs=108.0

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCc-------CCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNE-------FDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR   85 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~-------~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~   85 (220)
                      ..++|+++|..++|||||+++|.+..       +..+..+.++.+.....+.+++  ..+.+||+||+..+.......+.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence            57999999999999999999999876       2333333334433334454554  57889999999988888888889


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHh----CCeEEEeccC
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD--VSTEEGKSLAEEE----GLFFMETSAL  159 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~--~~~~~~~~~~~~~----~~~~~~~Sa~  159 (220)
                      .+|++++|+|+++...-+.. +++..+..   ...|.++++||+|+.....  ...++...++...    +++++.+||+
T Consensus        96 ~aD~~ilVvda~~g~~~qt~-e~l~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~  171 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPKTQTG-EHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  171 (482)
T ss_dssp             SCCEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             hCCEEEEEEecCCCccHHHH-HHHHHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECc
Confidence            99999999999874332222 22222222   2467799999999864211  1123344555544    5789999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027703          160 DSTNVEAAFEVVIREIY  176 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~~~  176 (220)
                      ++.|+.+++++|.+.+.
T Consensus       172 ~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          172 TGFGVDELKNLIITTLN  188 (482)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhc
Confidence            99999999999988775

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.77  E-value=2.3e-18  Score=140.06  Aligned_cols=117  Identities=18%  Similarity=0.206  Sum_probs=92.2

Q ss_pred             eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhC-CCCCcEEEEEecC
Q 027703           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDIT----------RRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKC  129 (220)
Q Consensus        61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~  129 (220)
                      ..+.+++||++|+..++..|..++++++++++|+|++          +..++.....|+..+.... ..+.|++++|||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5688999999999999999999999999999999998          7788999989988876542 3568999999999


Q ss_pred             CCCCCCC--C-------------------CHHHHHHHHHH----------------hCCeEEEeccCCCCCHHHHHHHHH
Q 027703          130 DLDSIRD--V-------------------STEEGKSLAEE----------------EGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus       130 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      |+...+.  .                   ..+++..++..                ..+.+++|||+++.|+.++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9853221  1                   14566666443                123468899999999999999999


Q ss_pred             HHHHH
Q 027703          173 REIYS  177 (220)
Q Consensus       173 ~~~~~  177 (220)
                      +.+.+
T Consensus       341 ~~I~~  345 (354)
T 2xtz_A          341 ETLRR  345 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.77  E-value=8.1e-18  Score=145.23  Aligned_cols=158  Identities=21%  Similarity=0.261  Sum_probs=110.1

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCc--CCC---------CC----cccceeeeeEEEEEe---CCeEEEEEEEecCCcc
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNE--FDS---------NS----KATIGVEFQTQVVDI---DGKEVKAQIWDTAGQE   74 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~--~~~---------~~----~~t~~~~~~~~~i~~---~~~~~~~~~~d~~g~~   74 (220)
                      ...+|+|+|..++|||||+++|+...  +..         ..    ...+++......+.+   ++..+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            46789999999999999999998632  110         00    111122222223333   4556889999999999


Q ss_pred             hhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC---
Q 027703           75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL---  151 (220)
Q Consensus        75 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~---  151 (220)
                      ++.......+..+|++++|+|+++..+.+....|.....    ...|+++++||.|+...+  ..+....+....++   
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            999888899999999999999999888888776655442    257899999999987643  22334445555555   


Q ss_pred             eEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          152 FFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       152 ~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      .++.+||+++.|++++++++.+.+.
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             eEEEeecccCCCchhHHHHHhhcCC
Confidence            4899999999999999999988764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.77  E-value=2.1e-19  Score=147.11  Aligned_cols=161  Identities=18%  Similarity=0.323  Sum_probs=86.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCc--------ccceeeeeEEEEEeCCeEEEEEEEecCCc-------ch
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSK--------ATIGVEFQTQVVDIDGKEVKAQIWDTAGQ-------ER   75 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~--------~t~~~~~~~~~i~~~~~~~~~~~~d~~g~-------~~   75 (220)
                      ...++|+|+|++|+|||||+++|++..... .+.        +|.+.......+...+..+.+.+|||+|+       ..
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            456899999999999999999987764332 221        34444333333444556678999999998       44


Q ss_pred             hhhhhH-------HhhcCCcEE-----------EEEEeCCC-cccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCC
Q 027703           76 FRAVTS-------AYYRGAVGA-----------LVVYDITR-RSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIR  135 (220)
Q Consensus        76 ~~~~~~-------~~~~~~~~~-----------i~v~d~~~-~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~  135 (220)
                      +.....       .+++.++++           +++|++++ ..++..+. .++..+    ....|+++|+||+|+...+
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~  190 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK  190 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence            444443       444433221           24444443 34455544 233332    3568999999999987544


Q ss_pred             CCCH--HHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          136 DVST--EEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       136 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      .+..  +++.+++...+++++++|++++.+ .+.|.++.+.+.+
T Consensus       191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence            3333  355566666788999999999999 8888888877765

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.77  E-value=2.9e-18  Score=137.73  Aligned_cols=116  Identities=16%  Similarity=0.182  Sum_probs=95.1

Q ss_pred             EEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCC
Q 027703           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDIT----------RRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCD  130 (220)
Q Consensus        62 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~D  130 (220)
                      .+.+++||++|+..++..|..++++++++++|+|.+          +..++.....|+..+.... ..+.|+++++||+|
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D  245 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  245 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence            478999999999999999999999999999999554          6677888778887765432 25689999999999


Q ss_pred             CCCCC----------------CCCHHHHHHHHH----------HhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          131 LDSIR----------------DVSTEEGKSLAE----------EEGLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       131 l~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      +...+                ....+++..++.          ..++.+++|||+|+.|++.+|+.+.+.+.+
T Consensus       246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~  318 (327)
T 3ohm_A          246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  318 (327)
T ss_dssp             HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence            86433                467788888854          345667789999999999999999988765

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.77  E-value=1.8e-17  Score=142.86  Aligned_cols=159  Identities=23%  Similarity=0.275  Sum_probs=112.5

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCc--CCCC-------------CcccceeeeeEEEEEe---CCeEEEEEEEecCCc
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNE--FDSN-------------SKATIGVEFQTQVVDI---DGKEVKAQIWDTAGQ   73 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~--~~~~-------------~~~t~~~~~~~~~i~~---~~~~~~~~~~d~~g~   73 (220)
                      +...+|+|+|..++|||||+++|+...  +...             ....+++......+.+   ++..+.+++|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            457899999999999999999997631  1110             0011111111222222   455688999999999


Q ss_pred             chhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC--
Q 027703           74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL--  151 (220)
Q Consensus        74 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~--  151 (220)
                      .++.......+..+|++++|+|+++..+.+....|.....    ...|+++++||+|+...+  ..+....+....++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9998888888999999999999999988888776655442    357899999999987543  22223444444455  


Q ss_pred             -eEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          152 -FFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       152 -~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                       .++.+||+++.|+.++++++.+.+.
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhcc
Confidence             4899999999999999999988764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.77  E-value=6.9e-18  Score=140.50  Aligned_cols=166  Identities=17%  Similarity=0.164  Sum_probs=109.1

Q ss_pred             CCceeeEEEEEECCCCCcHHHHHHHHhhCc---CCCCCcc--cceeeeeEEEEEe-------------C--C----eEEE
Q 027703            9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNE---FDSNSKA--TIGVEFQTQVVDI-------------D--G----KEVK   64 (220)
Q Consensus         9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~---~~~~~~~--t~~~~~~~~~i~~-------------~--~----~~~~   64 (220)
                      ..+.+.++|+++|..++|||||+++|++..   +..+..+  |+........+..             +  +    ....
T Consensus         5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   84 (410)
T 1kk1_A            5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR   84 (410)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred             ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence            455778999999999999999999999653   3333333  3332222222211             0  1    1367


Q ss_pred             EEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC--CCHHHH
Q 027703           65 AQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD--VSTEEG  142 (220)
Q Consensus        65 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~--~~~~~~  142 (220)
                      +.+||+||+..+..........+|++++|+|+++........+.+..+...  ...|+++++||+|+.....  ...++.
T Consensus        85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i  162 (410)
T 1kk1_A           85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENYRQI  162 (410)
T ss_dssp             EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence            899999999888776666677889999999998643111112222222222  1257889999999865321  122334


Q ss_pred             HHHHHH---hCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          143 KSLAEE---EGLFFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       143 ~~~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      ..++..   .+++++.+||+++.|+.+++++|.+.+.
T Consensus       163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            455443   3678999999999999999999887553

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.76  E-value=7.7e-19  Score=147.33  Aligned_cols=151  Identities=14%  Similarity=0.114  Sum_probs=98.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCC-cccceeeeeEEEEEeCCeEEEEEEEecCCcc--------hhhhhhHHhhc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNS-KATIGVEFQTQVVDIDGKEVKAQIWDTAGQE--------RFRAVTSAYYR   85 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~-~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~   85 (220)
                      ++|+++|++|||||||+|+|.+..+.... .+..+.+...+.+.+.+  ..+.+|||+|+.        .+...+..++.
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            68999999999999999999998765322 23333344444444444  467899999985        44556667889


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCH
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNV  164 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v  164 (220)
                      .+|++++|+|+.+..++..  .++..+..  ....|+++++||+|+...+.    ++..+. ..++ .++.+||+++.|+
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTH
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCCh
Confidence            9999999999988777654  33433322  24679999999999864321    111122 3344 6889999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          165 EAAFEVVIREIY  176 (220)
Q Consensus       165 ~~l~~~l~~~~~  176 (220)
                      .++++++.+.+.
T Consensus       153 ~~L~~~i~~~l~  164 (436)
T 2hjg_A          153 GDLLDAVAEHFK  164 (436)
T ss_dssp             HHHHHHHHHTGG
T ss_pred             HHHHHHHHHhcC
Confidence            999999987664

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.75  E-value=8.2e-20  Score=141.79  Aligned_cols=75  Identities=9%  Similarity=0.211  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...+++++.++++.++|  +|++|+.+...+.+.+.++. ++.+++++||+++.+. .||++++|++|+++..|+++++
T Consensus       148 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~  224 (243)
T 1mv5_A          148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNEL  224 (243)
T ss_dssp             HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHH
T ss_pred             HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence            33488999999999999  99999999999999998876 6899999999999886 5999999999999999998765

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.75  E-value=5.8e-20  Score=142.83  Aligned_cols=75  Identities=12%  Similarity=0.217  Sum_probs=67.4

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..|++++.++++.++|  +|++|+.+...+++.|.++ .++.+++++||+++.+.. ||++++|++|+++..|+++++.
T Consensus       155 ~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~  231 (247)
T 2ff7_A          155 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELL  231 (247)
T ss_dssp             HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence            3488999999999999  9999999999999999887 458899999999999865 9999999999999999887753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.75  E-value=3e-19  Score=142.46  Aligned_cols=76  Identities=18%  Similarity=0.298  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ...|++++.++++.++|  ||++|..+...+++.|.++. .+.++++++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus       199 vaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~  276 (306)
T 3nh6_A          199 VAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALL  276 (306)
T ss_dssp             HHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence            34488999999999999  99999999999999887764 46899999999999986 9999999999999999988753

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.75  E-value=2.2e-17  Score=138.39  Aligned_cols=156  Identities=17%  Similarity=0.188  Sum_probs=103.4

Q ss_pred             CCceeeEEEEEECCCCCcHHHHHHHHhhCc-------------------------------CCCCCcccceeeeeEEEEE
Q 027703            9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNE-------------------------------FDSNSKATIGVEFQTQVVD   57 (220)
Q Consensus         9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~-------------------------------~~~~~~~t~~~~~~~~~i~   57 (220)
                      .+....++|+++|.+++|||||+++|+...                               ...+..+.++.+.....+.
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~   91 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE   91 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence            344567999999999999999999995542                               1111123344444444444


Q ss_pred             eCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCccc---HH---HHHHHHHHHHhhCCCCCc-EEEEEecCC
Q 027703           58 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSS---FD---SVKRWLEELTTHCDTAVG-RMLVGNKCD  130 (220)
Q Consensus        58 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~l~~~~~~~~~-~~~v~~k~D  130 (220)
                      .++  ..+.+|||||+.++.......+..+|++++|+|+++...   |+   ...+.+..+..   ...| +++++||+|
T Consensus        92 ~~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~D  166 (439)
T 3j2k_7           92 TEK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMD  166 (439)
T ss_pred             cCC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCC
Confidence            443  588999999999998888888899999999999987532   11   11222222222   2345 889999999


Q ss_pred             CCCCC--CC----CHHHHHHHHHHh------CCeEEEeccCCCCCHHHHHH
Q 027703          131 LDSIR--DV----STEEGKSLAEEE------GLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus       131 l~~~~--~~----~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      +....  ..    ..++...++...      +++++.+||+++.|+.++.+
T Consensus       167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            85321  11    112234444443      35789999999999999765

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.75  E-value=6.8e-21  Score=148.56  Aligned_cols=76  Identities=20%  Similarity=0.235  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.+|++.++|  +|++|+.+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+ +..|+++++
T Consensus       137 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~  215 (253)
T 2nq2_C          137 ILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI  215 (253)
T ss_dssp             HHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence            33488999999999999  9999999999999999888776 8899999999999999999999999999 888877664

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.75  E-value=7e-21  Score=149.67  Aligned_cols=78  Identities=13%  Similarity=0.049  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccc-cceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS-VNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~-a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.+|++.++|  +|++|+.+...+++.|.++..++.+++++||+++++..+ ||++++|++|+++..|+++++
T Consensus       173 v~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  252 (267)
T 2zu0_C          173 NDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV  252 (267)
T ss_dssp             HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence            33488999999999999  999999999999998887755588999999999999886 999999999999999998875


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       253 ~  253 (267)
T 2zu0_C          253 K  253 (267)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.74  E-value=8.4e-18  Score=142.67  Aligned_cols=150  Identities=16%  Similarity=0.128  Sum_probs=96.9

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcC--C-----------------------------CCCcccceeeeeEEEEEeCCe
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEF--D-----------------------------SNSKATIGVEFQTQVVDIDGK   61 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~i~~~~~   61 (220)
                      ..+||+++|.+|+|||||+++|++...  .                             ....+.++.......  +...
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~--~~~~  109 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH--FSTH  109 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEE--EECS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEE--EecC
Confidence            469999999999999999999976511  1                             011112222222333  3334


Q ss_pred             EEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHH------HHHHHHHHHhhCCCCCcEEEEEecCCCCCCC
Q 027703           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDS------VKRWLEELTTHCDTAVGRMLVGNKCDLDSIR  135 (220)
Q Consensus        62 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~  135 (220)
                      ...+.+|||||+.++.......+..+|++++|+|+++..++..      ..+.+..+...  ...|+++++||+|+...+
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence            4688999999999999888899999999999999988654322      11111222221  234689999999987544


Q ss_pred             CCCHHHH----HHHHHHh-----CCeEEEeccCCCCCHHH
Q 027703          136 DVSTEEG----KSLAEEE-----GLFFMETSALDSTNVEA  166 (220)
Q Consensus       136 ~~~~~~~----~~~~~~~-----~~~~~~~Sa~~~~~v~~  166 (220)
                      ....++.    ..++...     .++++++||+++.|+.+
T Consensus       188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            3333332    2333322     46789999999999985

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.74  E-value=1.9e-17  Score=135.17  Aligned_cols=116  Identities=17%  Similarity=0.191  Sum_probs=89.1

Q ss_pred             EEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhC-CCCCcEEEEEecCC
Q 027703           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITR----------RSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCD  130 (220)
Q Consensus        62 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~D  130 (220)
                      .+.+.+||++|+..++..|..++++++++++|+|+++          ..++.....|+..+.... ..+.|+++++||+|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            3788999999999999999999999999999999998          678999888888876542 35689999999999


Q ss_pred             CCCCC----------------CCCHHHHHHHHH-----------HhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          131 LDSIR----------------DVSTEEGKSLAE-----------EEGLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       131 l~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      +...+                ....+++..++.           ..++.+++|||+++.|+.++|+++.+.+.+
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence            85322                256778777662           345778899999999999999999988764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.74  E-value=7.9e-20  Score=142.43  Aligned_cols=75  Identities=17%  Similarity=0.099  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccc-cceeeeeecCCCCCCCCCc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS-VNRVTLVKDGANSSKGSMM  213 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~-a~~~~~~~~G~~~~~g~~~  213 (220)
                      ...+++++.+|++.++|  +|++|+.+...+++.|.++..++.+++++||+++.+..+ ||++++|++|+++..|+++
T Consensus       152 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~  229 (250)
T 2d2e_A          152 NEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE  229 (250)
T ss_dssp             HHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred             HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence            34467999999999999  999999999999999887755688999999999999988 5999999999999988875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.73  E-value=7.2e-20  Score=141.50  Aligned_cols=176  Identities=19%  Similarity=0.226  Sum_probs=105.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .++|+|+||||||||++.|.+.           .++..|.+.+++. +.+..-+ +... .........-...       
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~-i~~v~Q~-~~~~-~~tv~enl~~~~~-------   91 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE-----------MDKVEGHVAIKGS-VAYVPQQ-AWIQ-NDSLRENILFGCQ-------   91 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC-----------SEEEEEEEEECSC-EEEECSS-CCCC-SEEHHHHHHTTSC-------
T ss_pred             EEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCE-EEEEcCC-CcCC-CcCHHHHhhCccc-------
Confidence            5899999999999999999998           4556788888773 2222111 1111 1122222211111       


Q ss_pred             CCCcccHHHHHHHHHHHHhhCCCC--CcEEEEEec-CCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEELTTHCDTA--VGRMLVGNK-CDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEV  170 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~v~~k-~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~  170 (220)
                      .. ......+.+...........+  .... +..+ ..++....+....+++++.++++.++|  +|++|+.+...+++.
T Consensus        92 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~  169 (237)
T 2cbz_A           92 LE-EPYYRSVIQACALLPDLEILPSGDRTE-IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN  169 (237)
T ss_dssp             CC-TTHHHHHHHHTTCHHHHTTSTTGGGSE-ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             cC-HHHHHHHHHHHhhHHHHHhcccccccc-ccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence            01 111222211111011000000  0000 0000 112222222234488999999999999  999999999999998


Q ss_pred             HHH--HHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          171 VIR--EIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       171 l~~--~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      +.+  ...++.+++++||+++.+. .||++++|++|+++..|+++++
T Consensus       170 l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~  215 (237)
T 2cbz_A          170 VIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQEL  215 (237)
T ss_dssp             TTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHH
Confidence            852  2234789999999999976 6999999999999999988765

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.73  E-value=1.7e-17  Score=141.61  Aligned_cols=117  Identities=19%  Similarity=0.158  Sum_probs=84.3

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCc------------------CCC----CCcccceeeeeEEEEEeCCeEEEEEEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNE------------------FDS----NSKATIGVEFQTQVVDIDGKEVKAQIW   68 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~------------------~~~----~~~~t~~~~~~~~~i~~~~~~~~~~~~   68 (220)
                      .....+|+|+|.+|||||||+++|+...                  +.+    ...+..+.......+.+.+  ..+.+|
T Consensus        10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~li   87 (528)
T 3tr5_A           10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLL   87 (528)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEE
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEE
Confidence            3456899999999999999999996211                  000    0001222223334444444  678999


Q ss_pred             ecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703           69 DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS  133 (220)
Q Consensus        69 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~  133 (220)
                      ||||+.++......+++.+|++++|+|+++..+.+....| ..+..   ...|+++++||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            9999999988888999999999999999998777776444 33332   3579999999999864

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.73  E-value=2.3e-17  Score=132.97  Aligned_cols=117  Identities=17%  Similarity=0.239  Sum_probs=93.4

Q ss_pred             eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhC-CCCCcEEEEEecC
Q 027703           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDIT----------RRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKC  129 (220)
Q Consensus        61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~  129 (220)
                      ..+.+++||++|+..++..|..++++++++++|+|++          +..++.....|+..+.... ..+.|+++++||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            3478999999999999999999999999999999998          6778888888888865543 3578999999999


Q ss_pred             CCCCCC---------------CCCHHHHHHHHHHh---------------------------CCeEEEeccCCCCCHHHH
Q 027703          130 DLDSIR---------------DVSTEEGKSLAEEE---------------------------GLFFMETSALDSTNVEAA  167 (220)
Q Consensus       130 Dl~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~Sa~~~~~v~~l  167 (220)
                      |+...+               ....+++..++...                           .+.+++|||+|..|++.+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v  318 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV  318 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence            985311               12456665554332                           356777999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          168 FEVVIREIYS  177 (220)
Q Consensus       168 ~~~l~~~~~~  177 (220)
                      |+.+.+.+.+
T Consensus       319 F~~v~~~Il~  328 (340)
T 4fid_A          319 FMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888765

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.72  E-value=2.7e-19  Score=152.41  Aligned_cols=158  Identities=20%  Similarity=0.212  Sum_probs=113.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .++|+++|.+|+|||||+++|.+..+.....++++.......+.+.+ ...+.||||||+..+.......+..+|++++|
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV   82 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILV   82 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence            36899999999999999999998877666665555544444443422 23678899999999988888889999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHH-HHHHH---HHH--hCCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTE-EGKSL---AEE--EGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~-~~~~~---~~~--~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +|+++....+.... +..+.   ....|+++++||+|+...+..... +...+   ...  ..++++++||+++.|+.++
T Consensus        83 VDa~dg~~~qt~e~-l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL  158 (537)
T 3izy_P           83 VAADDGVMKQTVES-IQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL  158 (537)
T ss_dssp             CBSSSCCCHHHHHH-HHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred             EECCCCccHHHHHH-HHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence            99998776655433 23332   235789999999998643322111 11111   001  1347888999999999999


Q ss_pred             HHHHHHHHH
Q 027703          168 FEVVIREIY  176 (220)
Q Consensus       168 ~~~l~~~~~  176 (220)
                      ++++..++.
T Consensus       159 le~I~~l~~  167 (537)
T 3izy_P          159 AEATIALAE  167 (537)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhhh
Confidence            999987664

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.72  E-value=3.5e-20  Score=145.13  Aligned_cols=74  Identities=7%  Similarity=0.012  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccc-eeeeeecCCCCCCCCCcccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVN-RVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~-~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..+++++.+|++.++|  +|++|+.+...+++.+.++..   +++++||+++++..+|| ++++|++|+++..|+++++.
T Consensus       138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~  214 (263)
T 2pjz_A          138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL  214 (263)
T ss_dssp             HHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred             HHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence            3388999999999999  999999999999998876643   99999999999999999 99999999999999887653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.72  E-value=3.7e-19  Score=139.31  Aligned_cols=76  Identities=18%  Similarity=0.199  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ...|++++.++++.++|  +|++|+.+...+++.+.++. ++.+++++||+++.+. .||++++|++|+++..|+++++.
T Consensus       164 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~  241 (260)
T 2ghi_A          164 IAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLL  241 (260)
T ss_dssp             HHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            34488999999999999  99999999999999888774 4789999999999986 59999999999999999887753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.71  E-value=2.2e-19  Score=147.59  Aligned_cols=75  Identities=7%  Similarity=0.209  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.+|++.++|  +|++|.....++.+.|.++ ..+.+++++||+++.+ ..|||+++|++|+++..|+++++
T Consensus       164 valARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~-~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el  240 (390)
T 3gd7_A          164 MCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA-FADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILEL  240 (390)
T ss_dssp             HHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT-TTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHH
T ss_pred             HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHH
Confidence            44488999999999999  9999999999999988764 3478999999998655 56999999999999999998875

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.71  E-value=8.1e-20  Score=143.84  Aligned_cols=76  Identities=17%  Similarity=0.259  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.++++.++|  +|++|..+...+++.|.++..+ +.+++++||+++.+.. ||++++|++|+++..|+++++
T Consensus       165 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l  243 (271)
T 2ixe_A          165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQL  243 (271)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHH
Confidence            33488999999999999  9999999999999988877543 8899999999999875 999999999999999987765

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.71  E-value=1.1e-16  Score=132.74  Aligned_cols=158  Identities=19%  Similarity=0.139  Sum_probs=110.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh----h---hhhHHhhcCCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF----R---AVTSAYYRGAV   88 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~----~---~~~~~~~~~~~   88 (220)
                      .++++|+||||||||+++|++........+..+..+..+.+..++ ...+.+||++|....    .   .........++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            479999999999999999998854222222223344455565554 246788999997421    1   11122345789


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703           89 GALVVYDITRRSSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      .++.++|++ ...+..+..+..++.....  ...|.++++||.|+...  ...++....+...+..++.+||+++.++++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            999999998 5677777777766554321  24688899999998643  223344455555678899999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          167 AFEVVIREIYS  177 (220)
Q Consensus       167 l~~~l~~~~~~  177 (220)
                      ++++|.+.+.+
T Consensus       315 L~~~i~~~l~~  325 (416)
T 1udx_A          315 LKEALHALVRS  325 (416)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.71  E-value=7.2e-18  Score=134.78  Aligned_cols=162  Identities=16%  Similarity=0.255  Sum_probs=82.7

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhC-cCCCCCc--------ccceeeeeEEEEEeCCeEEEEEEEecCCc-------c
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARN-EFDSNSK--------ATIGVEFQTQVVDIDGKEVKAQIWDTAGQ-------E   74 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~-~~~~~~~--------~t~~~~~~~~~i~~~~~~~~~~~~d~~g~-------~   74 (220)
                      +...++|+++|++|||||||+++|.+. .++..+.        ++.........+...+....+.+||++|+       .
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            455699999999999999999999886 5655541        12111111122222344568899999997       3


Q ss_pred             hhhhhhH-------HhhcCC-------------cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703           75 RFRAVTS-------AYYRGA-------------VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI  134 (220)
Q Consensus        75 ~~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~  134 (220)
                      .+.....       .++..+             ++++++.+.+. .+++....  ..+... ....++++++||.|+...
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-~~~~~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-HNKVNIVPVIAKADTLTL  170 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-TTTSCEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-HhcCCEEEEEEeCCCCCH
Confidence            3333322       232222             22333333222 23444331  223322 235789999999998653


Q ss_pred             CCCC--HHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          135 RDVS--TEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      +++.  .+++..++...++.++++||+++ +++++|+++.+.+.+
T Consensus       171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            3322  34677888888999999999999 999999999887754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.71  E-value=1.8e-17  Score=139.68  Aligned_cols=152  Identities=14%  Similarity=0.101  Sum_probs=96.6

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCC--------cchhhhhhHHh
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAG--------QERFRAVTSAY   83 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g--------~~~~~~~~~~~   83 (220)
                      ...+|+++|++|||||||+|+|.+..+..... +..+.+.....  .......+.+|||+|        +..+......+
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~--~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS--AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEE--CTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEE--EEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            35789999999999999999999987653222 22233322333  333335788999999        45556667778


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCC
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDST  162 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (220)
                      +..+|++++|+|..+......  .++..+...  ...|+++++||+|+....    .+...+. ..+. .++.+||.++.
T Consensus       100 ~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~  170 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGL  170 (456)
T ss_dssp             HHHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCT
T ss_pred             HhhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeeccccc
Confidence            899999999999876444333  344443322  468999999999975322    1111111 1222 46789999999


Q ss_pred             CHHHHHHHHHHHH
Q 027703          163 NVEAAFEVVIREI  175 (220)
Q Consensus       163 ~v~~l~~~l~~~~  175 (220)
                      |+.++++.+.+.+
T Consensus       171 gv~~L~~~i~~~l  183 (456)
T 4dcu_A          171 GLGDLLDAVAEHF  183 (456)
T ss_dssp             THHHHHHHHHTTG
T ss_pred             chHHHHHHHHhhc
Confidence            9999999987655

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.71  E-value=2.6e-17  Score=136.85  Aligned_cols=146  Identities=15%  Similarity=0.109  Sum_probs=100.0

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhC--------cCCCC---------CcccceeeeeEEEEEeCCeEEEEEEEecCCcc
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARN--------EFDSN---------SKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE   74 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~--------~~~~~---------~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~   74 (220)
                      ...++|+++|.+|+|||||+++|.+.        .+...         ..+..++..  ..+.+......+.+|||||+.
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCCSG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCChH
Confidence            45799999999999999999999873        11110         011222222  333343344678899999999


Q ss_pred             hhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCc-EEEEEecCCCCCCCCC---CHHHHHHHHHHhC
Q 027703           75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDSIRDV---STEEGKSLAEEEG  150 (220)
Q Consensus        75 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~~~~~---~~~~~~~~~~~~~  150 (220)
                      ++.......+..+|++++|+|+++....+. .+++..+...   ..| +++++||+|+......   ..++...++...+
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            888888888899999999999988765443 4555544432   456 7889999998641111   1124555665544


Q ss_pred             -----CeEEEeccCCCCC
Q 027703          151 -----LFFMETSALDSTN  163 (220)
Q Consensus       151 -----~~~~~~Sa~~~~~  163 (220)
                           ++++.+||+++.|
T Consensus       163 ~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             SCTTTSCEEECCHHHHHH
T ss_pred             ccccCCCEEEccHHHhhh
Confidence                 6899999999877

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.70  E-value=1.2e-16  Score=138.06  Aligned_cols=157  Identities=18%  Similarity=0.139  Sum_probs=103.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCc----ccceeeeeEEEE------------EeCCeEEEEEEEecCCcchhh
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSK----ATIGVEFQTQVV------------DIDGKEVKAQIWDTAGQERFR   77 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~----~t~~~~~~~~~i------------~~~~~~~~~~~~d~~g~~~~~   77 (220)
                      .++|+++|.+|+|||||+++|.+..+.....    ++.+........            ........+.+|||||+..|.
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~   84 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT   84 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence            4689999999999999999998875543221    111111110000            000011258899999999888


Q ss_pred             hhhHHhhcCCcEEEEEEeCCC---cccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC------------HH--
Q 027703           78 AVTSAYYRGAVGALVVYDITR---RSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS------------TE--  140 (220)
Q Consensus        78 ~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~------------~~--  140 (220)
                      ..+...+..+|++++|+|+++   +++++.+.    .+..   ...|+++++||+|+.......            .+  
T Consensus        85 ~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v  157 (594)
T 1g7s_A           85 TLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV  157 (594)
T ss_dssp             TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred             HHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence            888888899999999999998   44444332    2222   357999999999986422110            01  


Q ss_pred             ---------HHHHHHHHh---------------CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          141 ---------EGKSLAEEE---------------GLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       141 ---------~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                               +....+.+.               .++++.+||+++.|+.+++++|..++..
T Consensus       158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence                     111112221               2378889999999999999999987754

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.70  E-value=8e-17  Score=132.05  Aligned_cols=146  Identities=9%  Similarity=0.044  Sum_probs=103.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      +|+++|.+++|||||+++|+        .+..+.+.....+...+  ..+.+|||||+.++.......+..+|++++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            89999999999999999998        22222333333333333  468899999999887777778899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhCCCCCcE-EEEEe-cCCCCCCCCCC--HHHHHHHHHHh---CCeEEE--eccCC---CCC
Q 027703           96 ITRRSSFDSVKRWLEELTTHCDTAVGR-MLVGN-KCDLDSIRDVS--TEEGKSLAEEE---GLFFME--TSALD---STN  163 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~v~~-k~Dl~~~~~~~--~~~~~~~~~~~---~~~~~~--~Sa~~---~~~  163 (220)
                       +. ..+....+++..+...   ..|. +++.| |.|+ ......  .++.+.++...   .++++.  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             54 4444455555554433   3565 77888 9998 422111  13344444433   368999  99999   999


Q ss_pred             HHHHHHHHHHHHHH
Q 027703          164 VEAAFEVVIREIYS  177 (220)
Q Consensus       164 v~~l~~~l~~~~~~  177 (220)
                      ++++++.|.+.+..
T Consensus       167 i~~L~~~l~~~~~~  180 (370)
T 2elf_A          167 VDELKARINEVAEK  180 (370)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccc
Confidence            99999999988754

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.70  E-value=9.2e-17  Score=133.15  Aligned_cols=157  Identities=17%  Similarity=0.101  Sum_probs=105.4

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCc-------CCCC---------CcccceeeeeEEEEEeCCeEEEEEEEecCCcchh
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNE-------FDSN---------SKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF   76 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~-------~~~~---------~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~   76 (220)
                      +.++|+++|..++|||||+++|.+..       +...         .....++..  ..+.+......+.+|||||+.++
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~~~iiDtpG~~~f   79 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADY   79 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEeccCCeEEEEEECCChHHH
Confidence            46899999999999999999998741       1100         011122222  22333333457889999999988


Q ss_pred             hhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCc-EEEEEecCCCCCCCCC---CHHHHHHHHHHhC--
Q 027703           77 RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDSIRDV---STEEGKSLAEEEG--  150 (220)
Q Consensus        77 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~~~~~---~~~~~~~~~~~~~--  150 (220)
                      .......+..+|++++|+|+++....+... ++..+..   ...| +++++||+|+......   ..++.+.++...+  
T Consensus        80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  155 (397)
T 1d2e_A           80 VKNMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK  155 (397)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            777778889999999999999866554433 3333332   2466 6789999998641111   1234556666654  


Q ss_pred             ---CeEEEeccCCCCC----------HHHHHHHHHHHH
Q 027703          151 ---LFFMETSALDSTN----------VEAAFEVVIREI  175 (220)
Q Consensus       151 ---~~~~~~Sa~~~~~----------v~~l~~~l~~~~  175 (220)
                         ++++.+||+++.|          +.++++.|.+.+
T Consensus       156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence               6899999998764          677777776544

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.70  E-value=2.5e-17  Score=138.01  Aligned_cols=155  Identities=16%  Similarity=0.182  Sum_probs=101.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhC--cCCCCC-----------------------------cccceeeeeEEEEEeCC
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARN--EFDSNS-----------------------------KATIGVEFQTQVVDIDG   60 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~i~~~~   60 (220)
                      ...++|+++|..|+|||||+++|+..  .+...+                             .+..++......+  ..
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~~   81 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ET   81 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--EC
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--ec
Confidence            35699999999999999999999864  222110                             1112222222223  33


Q ss_pred             eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHH----HHhhC-CCCCcEEEEEecCCCCCCC
Q 027703           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE----LTTHC-DTAVGRMLVGNKCDLDSIR  135 (220)
Q Consensus        61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~----l~~~~-~~~~~~~~v~~k~Dl~~~~  135 (220)
                      ....+.+|||||+.++.......+..+|++++|+|+++ .+|+....|...    +.... ....++++++||+|+....
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence            34678999999999998888888999999999999998 677654332211    11111 1224678999999986521


Q ss_pred             --C----CCHHHHHHHHHHhC-----CeEEEeccCCCCCHHHHHH
Q 027703          136 --D----VSTEEGKSLAEEEG-----LFFMETSALDSTNVEAAFE  169 (220)
Q Consensus       136 --~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~  169 (220)
                        +    ...++.+.++...+     ++++++||+++.|+.++++
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence              1    11344666666654     6799999999999975543

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.69  E-value=4.1e-17  Score=141.59  Aligned_cols=154  Identities=18%  Similarity=0.123  Sum_probs=100.3

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCC-------------------------------cccceeeeeEEEEEeCC
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNS-------------------------------KATIGVEFQTQVVDIDG   60 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~-------------------------------~~t~~~~~~~~~i~~~~   60 (220)
                      ...++|+++|.+|+|||||+++|++.......                               .+.+++......+... 
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~-  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence            45789999999999999999999876332211                               1222333333344443 


Q ss_pred             eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcc---cHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCC
Q 027703           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRS---SFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRD  136 (220)
Q Consensus        61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~  136 (220)
                       ...+.+|||||+..+.......+..+|++++|+|+++..   .+.....+...+.... ....|+++++||+|+...+.
T Consensus       244 -~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          244 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             -SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             -CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence             357889999999998888888899999999999998642   1111111111211111 12245889999999875332


Q ss_pred             CCHHH----HHHHHHHh-----CCeEEEeccCCCCCHHHH
Q 027703          137 VSTEE----GKSLAEEE-----GLFFMETSALDSTNVEAA  167 (220)
Q Consensus       137 ~~~~~----~~~~~~~~-----~~~~~~~Sa~~~~~v~~l  167 (220)
                      ...++    ...++...     .++++.+||+++.|+.++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            22222    33333333     468999999999999876

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.69  E-value=2e-17  Score=143.37  Aligned_cols=76  Identities=18%  Similarity=0.252  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ...|+++++++++.++|  ||++|+.+...+.+.+.++. ++.++++++|+++.+. .||++++|++|+++++|+++++.
T Consensus       489 ~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~  566 (582)
T 3b5x_A          489 VAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLL  566 (582)
T ss_pred             HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            44488999999999999  99999999999999888764 4899999999999986 69999999999999999988763

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.69  E-value=5.9e-16  Score=129.68  Aligned_cols=154  Identities=19%  Similarity=0.224  Sum_probs=102.2

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCc---CCCC---------Ccc---------------------cceeeeeEEEEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNE---FDSN---------SKA---------------------TIGVEFQTQVVD   57 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~---~~~~---------~~~---------------------t~~~~~~~~~i~   57 (220)
                      ....++|+++|..++|||||+++|++..   +...         ...                     .++.......  
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~--   98 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY--   98 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE--
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeE--
Confidence            3467999999999999999999998654   1110         001                     1111111112  


Q ss_pred             eCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC
Q 027703           58 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV  137 (220)
Q Consensus        58 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~  137 (220)
                      +......+.+|||||+.++.......+..+|++++|+|+++....+. .+++..+...  ...|+++++||+|+......
T Consensus        99 ~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~  175 (434)
T 1zun_B           99 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL--GIKHIVVAINKMDLNGFDER  175 (434)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCEEEEEEECTTTTTSCHH
T ss_pred             eecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEEcCcCCcccHH
Confidence            22234578899999999888888888899999999999988654433 3344333332  22368899999998652211


Q ss_pred             ----CHHHHHHHHHHhC-----CeEEEeccCCCCCHHHHHH
Q 027703          138 ----STEEGKSLAEEEG-----LFFMETSALDSTNVEAAFE  169 (220)
Q Consensus       138 ----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~  169 (220)
                          ..++...++...+     ++++.+||+++.|+.++++
T Consensus       176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence                1234555666666     6789999999999987533

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.68  E-value=6.9e-16  Score=121.00  Aligned_cols=126  Identities=18%  Similarity=0.196  Sum_probs=84.5

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhh-------
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYY-------   84 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~-------   84 (220)
                      ..++|+++|.+|+|||||+++|++..+..... ++.+.......+..++  ..+.+|||||+..+......++       
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            46999999999999999999999987533222 2223444445555555  4788999999876544333332       


Q ss_pred             --cCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhCCCC--CcEEEEEecCCCCCCCCCCHHH
Q 027703           85 --RGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTA--VGRMLVGNKCDLDSIRDVSTEE  141 (220)
Q Consensus        85 --~~~~~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~v~~k~Dl~~~~~~~~~~  141 (220)
                        ..++++++|++++... +... ..|+..+.......  .|+++++||+|+...+....++
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~  173 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYET  173 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHH
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHH
Confidence              2789999999887654 3332 35666665443322  4899999999986545544443

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.68  E-value=1e-16  Score=127.86  Aligned_cols=160  Identities=14%  Similarity=0.114  Sum_probs=98.9

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCC------cccc----------------------eee------------
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNS------KATI----------------------GVE------------   50 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~------~~t~----------------------~~~------------   50 (220)
                      ....++|+|+|.+|||||||+++|.+..+.+..      .++.                      +.+            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            345689999999999999999999999874222      1210                      000            


Q ss_pred             ---------eeEEEEEeC-CeEEEEEEEecCCcc-------------hhhhhhHHhhcCCcEEE-EEEeCCCcccHHHHH
Q 027703           51 ---------FQTQVVDID-GKEVKAQIWDTAGQE-------------RFRAVTSAYYRGAVGAL-VVYDITRRSSFDSVK  106 (220)
Q Consensus        51 ---------~~~~~i~~~-~~~~~~~~~d~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~  106 (220)
                               .....+.+. .....+.+|||||..             .+......++..++.++ +|+|+++..+.....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                     000000000 012578899999964             23445566778888666 689988755444433


Q ss_pred             HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh--C-CeEEEeccCCCCCHHHHHHHHHH
Q 027703          107 RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE--G-LFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus       107 ~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      .++..+   .....|+++++||.|+........+.........  + .+++.+||+++.|+.++++++.+
T Consensus       183 ~~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          183 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             HHHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             HHHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            333333   2345799999999998654432222211100011  1 24566999999999999999876

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.68  E-value=2.9e-19  Score=137.49  Aligned_cols=77  Identities=13%  Similarity=0.338  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ...|++++.++++.++|  +|++|+.+...+++.+.+...++.+++++||+++.+. .||++++|++|+++..|+++++.
T Consensus       139 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~  217 (229)
T 2pze_A          139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ  217 (229)
T ss_dssp             HHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            33488999999999999  9999999999999875322234789999999999986 59999999999999999887653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.67  E-value=2e-18  Score=131.15  Aligned_cols=65  Identities=5%  Similarity=0.037  Sum_probs=57.0

Q ss_pred             HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703          141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGAN  206 (220)
Q Consensus       141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~  206 (220)
                      .+++++.++++.++|  +|++|+.+...+++.+.++..++.+++++||+++++..+||+++++. |+|
T Consensus       144 laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~-~~~  210 (214)
T 1sgw_A          144 LASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYS-TKI  210 (214)
T ss_dssp             HHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGB-C--
T ss_pred             HHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeC-Ccc
Confidence            377899999999999  99999999999999999887678999999999999999999987654 544

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.66  E-value=1.9e-17  Score=143.50  Aligned_cols=75  Identities=19%  Similarity=0.280  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..|+++++++++.++|  ||++|+.+...+.+.+.++. ++.++++++|+++.+. .||++++|++|++++.|+++++.
T Consensus       490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~  566 (582)
T 3b60_A          490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELL  566 (582)
T ss_dssp             HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHH
Confidence            3488999999999999  99999999999999888765 4899999999999886 69999999999999999988763

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.66  E-value=1.6e-15  Score=133.12  Aligned_cols=115  Identities=17%  Similarity=0.163  Sum_probs=82.4

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc------------------ccceeeeeEEEEEeCCeEEEEEEEecCCc
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK------------------ATIGVEFQTQVVDIDGKEVKAQIWDTAGQ   73 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~------------------~t~~~~~~~~~i~~~~~~~~~~~~d~~g~   73 (220)
                      +...+++|+|++|+|||||+++|++........                  ..+++......+..  ..+.+++|||+|+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~--~~~~~nliDTpG~   84 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF--RGHRVFLLDAPGY   84 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE--TTEEEEEEECCCS
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee--CCEEEEEEeCCCc
Confidence            456889999999999999999998654321110                  11222222333333  3478899999999


Q ss_pred             chhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCC
Q 027703           74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD  132 (220)
Q Consensus        74 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~  132 (220)
                      .++......+++.+|+.++|+|.++....+.. .++..+..   ...|+++++||.|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecCCchh
Confidence            99888888899999999999998876655443 44444433   257899999999976

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.66  E-value=7.8e-18  Score=142.32  Aligned_cols=154  Identities=16%  Similarity=0.172  Sum_probs=104.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      ..+|+++|..++|||||+++|.+..+.....++++.......+..++  ..+.+|||||+..|...+...+..+|++++|
T Consensus         4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV   81 (501)
T 1zo1_I            4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVLV   81 (501)
T ss_dssp             CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence            46899999999999999999998766554443333332222333344  3678899999998888888888999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHH----HHHHHHH--hCCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEE----GKSLAEE--EGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~----~~~~~~~--~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +|+++....+.. +.+..+..   ...|+++++||+|+..........    ...+...  ..++++++||+++.|+.++
T Consensus        82 Vda~~g~~~qT~-e~l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL  157 (501)
T 1zo1_I           82 VAADDGVMPQTI-EAIQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL  157 (501)
T ss_dssp             EETTTBSCTTTH-HHHHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred             eecccCccHHHH-HHHHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence            999884332222 12222222   357899999999986432111000    0001111  1368999999999999999


Q ss_pred             HHHHHH
Q 027703          168 FEVVIR  173 (220)
Q Consensus       168 ~~~l~~  173 (220)
                      ++++..
T Consensus       158 le~I~~  163 (501)
T 1zo1_I          158 LDAILL  163 (501)
T ss_dssp             HHHTTT
T ss_pred             hhhhhh
Confidence            998864

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.66  E-value=1.7e-17  Score=143.61  Aligned_cols=75  Identities=11%  Similarity=0.173  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..|++++++|++.++|  ||++|+.+...+.+.+.+. .++.|+++++|+++.+.. ||++++|++|+++++|+++++.
T Consensus       487 ~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~  563 (578)
T 4a82_A          487 SIARIFLNNPPILILDEATSALDLESESIIQEALDVL-SKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELI  563 (578)
T ss_dssp             HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH-TTTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence            3488999999999999  9999999988888877655 457899999999999864 9999999999999999988763

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.66  E-value=5.3e-17  Score=137.09  Aligned_cols=155  Identities=18%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhC--cCCC-----------------------------CCcccceeeeeEEEEEeCC
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARN--EFDS-----------------------------NSKATIGVEFQTQVVDIDG   60 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~i~~~~   60 (220)
                      ...++|+++|..++|||||+++|+..  .+..                             +....+++......+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            46799999999999999999999752  1210                             0011112222222333333


Q ss_pred             eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcc---cHHHHHHHHHHHHhhCCCCCc-EEEEEecCCCCCCCC
Q 027703           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRS---SFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDSIRD  136 (220)
Q Consensus        61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~~~~  136 (220)
                        ..+.+|||||+.+|.......+..+|++++|+|+++..   +|+....+...+........| +++++||+|+.....
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence              57889999999988887778889999999999998852   232111222222111112455 889999999853210


Q ss_pred             ------CCHHHHHHHHHHh-------CCeEEEeccCCCCCHHHHH
Q 027703          137 ------VSTEEGKSLAEEE-------GLFFMETSALDSTNVEAAF  168 (220)
Q Consensus       137 ------~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~l~  168 (220)
                            ...++...++...       +++++++||+++.|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                  1122355666555       4679999999999998765

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.66  E-value=9.9e-18  Score=145.61  Aligned_cols=76  Identities=8%  Similarity=0.180  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ...|+++++++++.++|  ||++|+.+...+.+.+.++. ++.|+++++|+++.+.. ||++++|++|+++++|+++++.
T Consensus       500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~  577 (598)
T 3qf4_B          500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELI  577 (598)
T ss_dssp             HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHH
T ss_pred             HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence            33488999999999999  99999999999999887764 58999999999999875 9999999999999999998864

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.65  E-value=2.5e-16  Score=128.94  Aligned_cols=161  Identities=11%  Similarity=0.092  Sum_probs=104.0

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeE-------------EE------------------------
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQT-------------QV------------------------   55 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~-------------~~------------------------   55 (220)
                      ...+|+|+|++|||||||+++|.+..+.+.+..+.+..+..             ..                        
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            34599999999999999999999987744443222211100             00                        


Q ss_pred             ---------------EEe-CCeEEEEEEEecCCcchh-------------hhhhHHhhcCCcEEEEEEeCCCcccHHHHH
Q 027703           56 ---------------VDI-DGKEVKAQIWDTAGQERF-------------RAVTSAYYRGAVGALVVYDITRRSSFDSVK  106 (220)
Q Consensus        56 ---------------i~~-~~~~~~~~~~d~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  106 (220)
                                     +.+ ......+.+|||||....             ......++..+++++++++..+.....  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                           000 011235789999997654             445667889999999999865433222  2


Q ss_pred             HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703          107 RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       107 ~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                      .|+..+........|+++++||.|+........+.+.......+..|+.+++..+.++.+.+.++....
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~  259 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARK  259 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence            333334444445678999999999875554444444444444567889999998888877766554443

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.65  E-value=1.1e-15  Score=138.54  Aligned_cols=162  Identities=16%  Similarity=0.121  Sum_probs=105.2

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCc-------CC-----C--CCcccceeeeeEEEEEeCCeEEEEEEEecCCcch
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNE-------FD-----S--NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER   75 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~-------~~-----~--~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~   75 (220)
                      ...+.++|+++|..++|||||+++|.+..       +.     +  ..+++.++......+.++.....+.+|||||+.+
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            34567999999999999999999998741       00     0  0111122211222233444446789999999998


Q ss_pred             hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCc-EEEEEecCCCCCCCCC---CHHHHHHHHHHhC-
Q 027703           76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDSIRDV---STEEGKSLAEEEG-  150 (220)
Q Consensus        76 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~~~~~---~~~~~~~~~~~~~-  150 (220)
                      +.......+..+|++++|+|+++....+. .+++..+...   ..| +++++||+|+......   ..++...++...+ 
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~  447 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF  447 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence            88777788899999999999988654433 3444444332   456 6889999998642111   1234556666554 


Q ss_pred             ----CeEEEeccCCC--------CCHHHHHHHHHHHH
Q 027703          151 ----LFFMETSALDS--------TNVEAAFEVVIREI  175 (220)
Q Consensus       151 ----~~~~~~Sa~~~--------~~v~~l~~~l~~~~  175 (220)
                          ++++.+||+++        .++.++++.|.+.+
T Consensus       448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             cccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence                68999999999        34666666665533

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.65  E-value=1.2e-17  Score=144.79  Aligned_cols=76  Identities=11%  Similarity=0.219  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ...|+++++++++.++|  ||++|+.+...+.+.+.++ .++.|+++++|+++.+. .||++++|++|+++++|+++++.
T Consensus       488 v~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~  565 (587)
T 3qf4_A          488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY-TKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELL  565 (587)
T ss_dssp             HHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH-STTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            33488999999999999  9999999999999988765 45899999999999986 79999999999999999998763

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.64  E-value=3.2e-16  Score=129.97  Aligned_cols=160  Identities=16%  Similarity=0.207  Sum_probs=80.3

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc--------ccceeeeeEEEEEeCCeEEEEEEEecCCcchhh----
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK--------ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR----   77 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~--------~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~----   77 (220)
                      -....++|+|+|++|||||||+++|.+..++..+.        ++.........+...+....+.+||++|.....    
T Consensus        27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~  106 (418)
T 2qag_C           27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN  106 (418)
T ss_dssp             C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred             ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence            34556899999999999999999999998743321        122111111111122333578899999975431    


Q ss_pred             ---hh------------------hHHhhcCCcEEEEEEeCCCc-ccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703           78 ---AV------------------TSAYYRGAVGALVVYDITRR-SSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI  134 (220)
Q Consensus        78 ---~~------------------~~~~~~~~~~~i~v~d~~~~-~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~  134 (220)
                         ..                  ...++.++++.+++|..+.. .++.... .|+..+.    ...|+++|+||+|+...
T Consensus       107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTP  182 (418)
T ss_dssp             -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccH
Confidence               10                  01123344433334433322 3444443 4555542    35889999999997654


Q ss_pred             CCCCH--HHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703          135 RDVST--EEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus       135 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      +.+..  .++...+...++.++.+|+.++.++.+++..+.+
T Consensus       183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~  223 (418)
T 2qag_C          183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD  223 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence            43333  4566777788999999999999999887765553

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.63  E-value=2.4e-16  Score=132.82  Aligned_cols=151  Identities=16%  Similarity=0.165  Sum_probs=99.2

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhC--cCCCC-----------------------------CcccceeeeeEEEEEeCC
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARN--EFDSN-----------------------------SKATIGVEFQTQVVDIDG   60 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~--~~~~~-----------------------------~~~t~~~~~~~~~i~~~~   60 (220)
                      ...++|+++|.+++|||||+++|++.  .+...                             ..+.+++......+.  .
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~--~   82 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE--T   82 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE--C
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe--c
Confidence            35799999999999999999999864  12110                             001122222222333  3


Q ss_pred             eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcc---cHH---HHHHHHHHHHhhCCCCCc-EEEEEecCCCCC
Q 027703           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRS---SFD---SVKRWLEELTTHCDTAVG-RMLVGNKCDLDS  133 (220)
Q Consensus        61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~  133 (220)
                      ....+.+|||||+.++.......+..+|++++|+|+++..   +|+   ...+++..+..   ...| +++++||+|+..
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence            3467899999999998888888899999999999998753   221   22222222222   2344 888999999863


Q ss_pred             CCCC----CHHHHHHHHHHhC-----CeEEEeccCCCCCHHHH
Q 027703          134 IRDV----STEEGKSLAEEEG-----LFFMETSALDSTNVEAA  167 (220)
Q Consensus       134 ~~~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l  167 (220)
                      ....    ..++.+.++...+     ++++++||+++.|+.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            2111    1223555555554     68999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.63  E-value=9.9e-18  Score=145.03  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=69.6

Q ss_pred             HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHH-HHhhhhhcCcchhhhccccceeeeeec--CCCCCCCCCccc
Q 027703          141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIY-SNISRKVLNSDAYKAELSVNRVTLVKD--GANSSKGSMMDF  215 (220)
Q Consensus       141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~-~~~~~~~~~h~~~~~~~~a~~~~~~~~--G~~~~~g~~~~~  215 (220)
                      .|++++.++++.++|  |+++|.....++.+.|.++.. .+.+++++|||++++..+|||+++|++  |+++..|+|+++
T Consensus       478 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~  557 (608)
T 3j16_B          478 IVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESL  557 (608)
T ss_dssp             HHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred             HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence            367899999999999  999999999999999998875 489999999999999999999999997  899999999876


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       558 ~  558 (608)
T 3j16_B          558 L  558 (608)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.63  E-value=1.4e-17  Score=132.14  Aligned_cols=76  Identities=13%  Similarity=0.341  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.++++.++|  +|++|+.+...+++.+.+.+.++.+++++||+++.+. .||++++|++|+++..|+++++
T Consensus       168 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l  245 (290)
T 2bbs_A          168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSEL  245 (290)
T ss_dssp             HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHH
Confidence            44488999999999999  9999999999999865322234789999999999886 5999999999999999988765

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.63  E-value=6.8e-15  Score=115.79  Aligned_cols=127  Identities=15%  Similarity=0.122  Sum_probs=81.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhH-------Hh
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTS-------AY   83 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~-------~~   83 (220)
                      ...++|+++|.+|+|||||+|+|++..+..... ++.+.......+...  ...+.+|||||+..+.....       .+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            346999999999999999999999987643222 222222333333333  36788999999865432111       11


Q ss_pred             --hcCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhCCCC--CcEEEEEecCCCCCCCCCCHHH
Q 027703           84 --YRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTA--VGRMLVGNKCDLDSIRDVSTEE  141 (220)
Q Consensus        84 --~~~~~~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~v~~k~Dl~~~~~~~~~~  141 (220)
                        ...+|++++|+|.+.. ++... ..|+..+.......  .|+++++||+|+...+....++
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~  176 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDE  176 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHH
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHH
Confidence              2468999999998653 33332 35666665443322  6899999999986544444443

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.63  E-value=1.8e-14  Score=126.84  Aligned_cols=122  Identities=20%  Similarity=0.193  Sum_probs=86.2

Q ss_pred             CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCc--CCCCC----------------cccceeeeeEEEEEeCCeEEEEEE
Q 027703            6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNE--FDSNS----------------KATIGVEFQTQVVDIDGKEVKAQI   67 (220)
Q Consensus         6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~--~~~~~----------------~~t~~~~~~~~~i~~~~~~~~~~~   67 (220)
                      +.........+|+|+|.+|+|||||+++|+...  +....                ....++......+.+.  ...+++
T Consensus         4 ~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~l   81 (691)
T 1dar_A            4 KVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINI   81 (691)
T ss_dssp             TCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEE
T ss_pred             cccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEE
Confidence            344556778999999999999999999998421  11000                1111222223333343  367899


Q ss_pred             EecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703           68 WDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS  133 (220)
Q Consensus        68 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~  133 (220)
                      |||||+.++...+..+++.+|++++|+|+++..+++....|. .+..   ...|+++++||+|+..
T Consensus        82 iDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           82 IDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             ECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred             EECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence            999999988888889999999999999999988887765554 3332   2578999999999864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.62  E-value=1.7e-15  Score=133.50  Aligned_cols=162  Identities=13%  Similarity=0.157  Sum_probs=106.2

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceee--e-----eEEEEEe--------------------------
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVE--F-----QTQVVDI--------------------------   58 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~--~-----~~~~i~~--------------------------   58 (220)
                      ..++|+|+|++|+|||||+|+|++..+.+... ++....  .     ...++.+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            46899999999999999999999987544332 222100  0     0001111                          


Q ss_pred             --------------------CCeE--EEEEEEecCCcch---hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHH
Q 027703           59 --------------------DGKE--VKAQIWDTAGQER---FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT  113 (220)
Q Consensus        59 --------------------~~~~--~~~~~~d~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~  113 (220)
                                          +...  ..+.+|||||...   .......++..+|++++|+|+++..+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                                0000  2478999999754   23445568899999999999998888777655543332


Q ss_pred             hhCCCCCcEEEEEecCCCCCCCCCCHH---H-------HHHH----HH-H--------hCCeEEEeccC-----------
Q 027703          114 THCDTAVGRMLVGNKCDLDSIRDVSTE---E-------GKSL----AE-E--------EGLFFMETSAL-----------  159 (220)
Q Consensus       114 ~~~~~~~~~~~v~~k~Dl~~~~~~~~~---~-------~~~~----~~-~--------~~~~~~~~Sa~-----------  159 (220)
                         ....|+++|+||+|+........+   +       ....    +. .        ....++.+||+           
T Consensus       228 ---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 ---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             ---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             ---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence               224679999999998643312111   1       1111    11 1        12368999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHHH
Q 027703          160 ---DSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       160 ---~~~~v~~l~~~l~~~~~~  177 (220)
                         ++.|+.++++.+.+.+..
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHHH
Confidence               999999999999988865

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.61  E-value=2.8e-15  Score=120.40  Aligned_cols=164  Identities=16%  Similarity=0.133  Sum_probs=97.1

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc------cc--ceeee----------eEE------------------
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK------AT--IGVEF----------QTQ------------------   54 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~------~t--~~~~~----------~~~------------------   54 (220)
                      .....+|+|+|.+|||||||+|+|++..+.+...      ++  ...+.          ..+                  
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            3456799999999999999999999988632221      10  00000          000                  


Q ss_pred             ---------------------EEE-eCCeEEEEEEEecCCcch-------------hhhhhHHhhcCCcEEEEEEeCCCc
Q 027703           55 ---------------------VVD-IDGKEVKAQIWDTAGQER-------------FRAVTSAYYRGAVGALVVYDITRR   99 (220)
Q Consensus        55 ---------------------~i~-~~~~~~~~~~~d~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~   99 (220)
                                           .+. .......+.+|||||...             +......++..+|++++|+|..+.
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~  180 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT  180 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence                                 000 011124688999999753             344566688999999999997433


Q ss_pred             c-cHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE---eccCC---CCCHHHHHHHHH
Q 027703          100 S-SFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME---TSALD---STNVEAAFEVVI  172 (220)
Q Consensus       100 ~-~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~Sa~~---~~~v~~l~~~l~  172 (220)
                      . .......+...+   .....|+++++||.|+........+.........+..+++   .|+.+   +.++.++++.+.
T Consensus       181 ~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~  257 (315)
T 1jwy_B          181 DLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI  257 (315)
T ss_dssp             CSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred             chhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence            2 111111222222   2346799999999998654432222221100111245666   45555   789999999988


Q ss_pred             HHHHH
Q 027703          173 REIYS  177 (220)
Q Consensus       173 ~~~~~  177 (220)
                      +.+..
T Consensus       258 ~~~~~  262 (315)
T 1jwy_B          258 LYFKN  262 (315)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            87765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.60  E-value=1.2e-17  Score=142.79  Aligned_cols=64  Identities=17%  Similarity=0.247  Sum_probs=59.6

Q ss_pred             HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecC
Q 027703          141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDG  204 (220)
Q Consensus       141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G  204 (220)
                      .|++++.++++.++|  |+++|.....++.+.|.++..+ +.+++++|||++++..+|||+++|++|
T Consensus       396 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~  462 (538)
T 3ozx_A          396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE  462 (538)
T ss_dssp             HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            377999999999999  9999999999999999988876 889999999999999999999999974

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.60  E-value=5.2e-16  Score=145.06  Aligned_cols=177  Identities=14%  Similarity=0.181  Sum_probs=110.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcc--hhhhhhHHhhc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQE--RFRAVTSAYYR   85 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~--~~~~~~~~~~~   85 (220)
                      +++|+|++|||||||++.|.+.           .++..|.+.++|.+++-        .+--+++.+  .......+..-
T Consensus       446 ~vaivG~sGsGKSTll~ll~~~-----------~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~  514 (1321)
T 4f4c_A          446 TVALVGSSGCGKSTIISLLLRY-----------YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISL  514 (1321)
T ss_dssp             EEEEEECSSSCHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHT
T ss_pred             EEEEEecCCCcHHHHHHHhccc-----------cccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhh
Confidence            6899999999999999999998           45567888888843210        000111111  00112222211


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHH------HHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLE------ELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS  157 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S  157 (220)
                      ..          ...+.+++.+...      .+....+. .-..+.-.-..|.....+....||++.+++++.++|  ||
T Consensus       515 g~----------~~~~~~~v~~a~~~a~l~~~i~~lp~G-~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tS  583 (1321)
T 4f4c_A          515 GK----------EGITREEMVAACKMANAEKFIKTLPNG-YNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATS  583 (1321)
T ss_dssp             TC----------TTCCHHHHHHHHHHTTCHHHHHHSTTT-TSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred             hc----------ccchHHHHHHHHHHccchhHHHcCCCC-CccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccc
Confidence            10          1123333332221      12222221 111221111223322233344488999999999999  99


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          158 ALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       158 a~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ++|.++-..+.+.+ +.+.+++|+++++|++..+. .||+|++|++|+|+++|+++|+.
T Consensus       584 aLD~~te~~i~~~l-~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~  640 (1321)
T 4f4c_A          584 ALDAESEGIVQQAL-DKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALM  640 (1321)
T ss_dssp             TSCTTTHHHHHHHH-HHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred             cCCHHHHHHHHHHH-HHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHHH
Confidence            99999865555555 55667899999999999865 69999999999999999988764

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.59  E-value=6.1e-14  Score=123.52  Aligned_cols=117  Identities=21%  Similarity=0.224  Sum_probs=83.6

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhh--CcCCCCC----------------cccceeeeeEEEEEeCCeEEEEEEEecCC
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFAR--NEFDSNS----------------KATIGVEFQTQVVDIDGKEVKAQIWDTAG   72 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~--~~~~~~~----------------~~t~~~~~~~~~i~~~~~~~~~~~~d~~g   72 (220)
                      .+...+|+|+|.+|+|||||+++|+.  ..+....                .+..++......+.+.+  ..+++|||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence            45578999999999999999999985  2221100                11112222233344443  6788999999


Q ss_pred             cchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703           73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS  133 (220)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~  133 (220)
                      +.++......+++.+|++++|+|+++..+.+....|. .+..   ...|+++++||+|+..
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence            9988888888999999999999999988887765543 3333   2578999999999864

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.59  E-value=3.2e-16  Score=135.66  Aligned_cols=150  Identities=19%  Similarity=0.211  Sum_probs=79.0

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCc-------------------------------CCCCCcccceeeeeEEEEEeC
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNE-------------------------------FDSNSKATIGVEFQTQVVDID   59 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~-------------------------------~~~~~~~t~~~~~~~~~i~~~   59 (220)
                      ....++|+++|.+++|||||+++|++..                               +.....+++++......+.. 
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-  252 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-  252 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence            3467999999999999999999996431                               00111222233333333332 


Q ss_pred             CeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcc---cH---HHHHHHHHHHHhhCCCCC-cEEEEEecCCCC
Q 027703           60 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRS---SF---DSVKRWLEELTTHCDTAV-GRMLVGNKCDLD  132 (220)
Q Consensus        60 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~l~~~~~~~~-~~~~v~~k~Dl~  132 (220)
                       ....+.+|||||+..+.......+..+|++++|+|+++..   .+   ....+.+..+...   .. ++++++||+|+.
T Consensus       253 -~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~  328 (592)
T 3mca_A          253 -DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM  328 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred             -CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence             3357889999999988777777888999999999997532   11   1111122222222   34 488899999986


Q ss_pred             CCCCCCH----HHHHHHH-HHhC-----CeEEEeccCCCCCHH
Q 027703          133 SIRDVST----EEGKSLA-EEEG-----LFFMETSALDSTNVE  165 (220)
Q Consensus       133 ~~~~~~~----~~~~~~~-~~~~-----~~~~~~Sa~~~~~v~  165 (220)
                      .......    .+...++ ...+     ++++.+||+++.|+.
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            4222111    2233333 3233     378999999999998

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.59  E-value=1.2e-17  Score=144.79  Aligned_cols=76  Identities=12%  Similarity=0.209  Sum_probs=68.0

Q ss_pred             HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeec--CCCCCCCCCccc
Q 027703          141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKD--GANSSKGSMMDF  215 (220)
Q Consensus       141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~--G~~~~~g~~~~~  215 (220)
                      .|++++.++++.++|  |+++|..+..++.+.|.++..+ +.+++++|||++++..+|||+++|++  |+++..|+++++
T Consensus       482 iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~  561 (607)
T 3bk7_A          482 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM  561 (607)
T ss_dssp             HHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred             HHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHH
Confidence            377999999999999  9999999999999999888754 89999999999999999999999997  777778998775


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       562 ~  562 (607)
T 3bk7_A          562 R  562 (607)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.59  E-value=6.6e-17  Score=151.04  Aligned_cols=75  Identities=16%  Similarity=0.244  Sum_probs=64.5

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..||++++++++.++|  ||++|.++-..+.+.|. ...++.|+++++|+++.+. .||+|+||++|+|++.|+++++.
T Consensus      1227 aiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~-~~~~~~TvI~IAHRLsTi~-~aD~I~Vld~G~IvE~Gth~eLl 1303 (1321)
T 4f4c_A         1227 AIARALVRNPKILLLDEATSALDTESEKVVQEALD-RAREGRTCIVIAHRLNTVM-NADCIAVVSNGTIIEKGTHTQLM 1303 (1321)
T ss_dssp             HHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHT-TTSSSSEEEEECSSSSTTT-TCSEEEEESSSSEEEEECHHHHH
T ss_pred             HHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHH-HHcCCCEEEEeccCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            3488999999999999  99999998766666554 4456799999999999977 59999999999999999998864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.58  E-value=2.3e-17  Score=141.35  Aligned_cols=75  Identities=12%  Similarity=0.217  Sum_probs=67.7

Q ss_pred             HHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHH-HHhhhhhcCcchhhhccccceeeeeec--CCCCCCCCCcccc
Q 027703          142 GKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIY-SNISRKVLNSDAYKAELSVNRVTLVKD--GANSSKGSMMDFS  216 (220)
Q Consensus       142 ~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~-~~~~~~~~~h~~~~~~~~a~~~~~~~~--G~~~~~g~~~~~~  216 (220)
                      |++++.++++.++|  |+++|..+..++.+.|.++.. .+.+++++|||++++..+|||+++|++  |+++..|+++++.
T Consensus       413 AraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~  492 (538)
T 1yqt_A          413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMR  492 (538)
T ss_dssp             HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence            77999999999999  999999999999999998875 489999999999999999999999997  6777789987753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.58  E-value=9.4e-16  Score=142.98  Aligned_cols=76  Identities=12%  Similarity=0.161  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ...|+++++++++.++|  ||++|..+...+.+.+. ...++.|+++++|+++.+.. ||+|++|++|+++++|+++++.
T Consensus       535 iaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~-~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~  612 (1284)
T 3g5u_A          535 IAIARALVRNPKILLLDEATSALDTESEAVVQAALD-KAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELM  612 (1284)
T ss_dssp             HHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHH-HHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHH
T ss_pred             HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH-HHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence            33488999999999999  99999988776666554 44568999999999999876 9999999999999999987753

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.57  E-value=1.4e-15  Score=125.69  Aligned_cols=85  Identities=22%  Similarity=0.246  Sum_probs=48.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEE---------------------eCC-eEEEEEEEecCC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVD---------------------IDG-KEVKAQIWDTAG   72 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~---------------------~~~-~~~~~~~~d~~g   72 (220)
                      +||+++|.+|||||||+|+|++........+..+..+..+...                     +++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999999873322223223333333321                     122 247899999999


Q ss_pred             cchh----hhhhH---HhhcCCcEEEEEEeCCCc
Q 027703           73 QERF----RAVTS---AYYRGAVGALVVYDITRR   99 (220)
Q Consensus        73 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~   99 (220)
                      ....    .....   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            7532    11222   346889999999999875

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.57  E-value=1.8e-13  Score=116.91  Aligned_cols=116  Identities=16%  Similarity=0.148  Sum_probs=78.1

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCc--CCCC------------------C--cccceeeeeEEEEEeCCeEEEEEEEe
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNE--FDSN------------------S--KATIGVEFQTQVVDIDGKEVKAQIWD   69 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~--~~~~------------------~--~~t~~~~~~~~~i~~~~~~~~~~~~d   69 (220)
                      ....+|+|+|.+|+|||||+++|+...  +...                  .  ....++......+..  ....+.+||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY--HDCLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE--TTEEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE--CCeEEEEEE
Confidence            456899999999999999999998631  1000                  0  001111111122333  336789999


Q ss_pred             cCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703           70 TAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS  133 (220)
Q Consensus        70 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~  133 (220)
                      |||+.++......++..+|++++|+|+++...... ..++..+   .....|+++++||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~---~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT---RLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence            99999888888888999999999999988654333 2222222   234688999999999864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.57  E-value=3.5e-16  Score=145.84  Aligned_cols=74  Identities=14%  Similarity=0.262  Sum_probs=65.6

Q ss_pred             HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      .|+++++++++.++|  ||++|..+...+.+.+.+ ..++.|+++++|+++.+. .||||++|++|++++.|+++++.
T Consensus      1182 iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~-~~~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~~g~~~~l~ 1257 (1284)
T 3g5u_A         1182 IARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKEHGTHQQLL 1257 (1284)
T ss_dssp             HHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHH-HSSSSCEEEECSCTTGGG-SCSEEEEEETBEEEEEECHHHHH
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH-hCCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence            388999999999999  999999998888887755 445889999999999986 49999999999999999988753

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.54  E-value=2.7e-13  Score=110.20  Aligned_cols=84  Identities=21%  Similarity=0.175  Sum_probs=58.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE---------------EEEEEEecCCcchhh--
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE---------------VKAQIWDTAGQERFR--   77 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~---------------~~~~~~d~~g~~~~~--   77 (220)
                      ++++++|.+|||||||+|+|++..+.....+..+..+..+.+.+++..               ..+.+||++|+.+..  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            689999999999999999999987544333333444445556555421               478999999987542  


Q ss_pred             -----hhhHHhhcCCcEEEEEEeCCC
Q 027703           78 -----AVTSAYYRGAVGALVVYDITR   98 (220)
Q Consensus        78 -----~~~~~~~~~~~~~i~v~d~~~   98 (220)
                           .....+++.+|++++|+|+++
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCC
Confidence                 123345789999999999976

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.54  E-value=4.3e-13  Score=118.27  Aligned_cols=120  Identities=18%  Similarity=0.112  Sum_probs=83.7

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhC--cCCCCC----------------cccceeeeeEEEEEeC-----CeEEEEE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARN--EFDSNS----------------KATIGVEFQTQVVDID-----GKEVKAQ   66 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~--~~~~~~----------------~~t~~~~~~~~~i~~~-----~~~~~~~   66 (220)
                      ..+...+|+|+|..|+|||||+++|+..  .+...+                ...+++......+.+.     +..+.++
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            3456789999999999999999999753  111100                1111222222233332     2337889


Q ss_pred             EEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703           67 IWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS  133 (220)
Q Consensus        67 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~  133 (220)
                      +|||||+.+|.......++.+|++++|+|+++....+....| .....   ...|+++++||.|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence            999999999888888899999999999999987766655433 33222   3578999999999864

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.53  E-value=4.6e-14  Score=116.20  Aligned_cols=121  Identities=16%  Similarity=0.167  Sum_probs=96.4

Q ss_pred             EEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhC-CCCCcEE
Q 027703           55 VVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITR----------RSSFDSVKRWLEELTTHC-DTAVGRM  123 (220)
Q Consensus        55 ~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~-~~~~~~~  123 (220)
                      .+.+.+  +.+++||++|+..++..|..++++++++++|||+++          ..+|.....|+..+.... ..+.|++
T Consensus       211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii  288 (402)
T 1azs_C          211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI  288 (402)
T ss_dssp             EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred             EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence            344443  789999999999999999999999999999999998          889999999999876543 3578999


Q ss_pred             EEEecCCCCCCCC---C---------------------------CHHHHHHHHHH-------------hCCeEEEeccCC
Q 027703          124 LVGNKCDLDSIRD---V---------------------------STEEGKSLAEE-------------EGLFFMETSALD  160 (220)
Q Consensus       124 ~v~~k~Dl~~~~~---~---------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~  160 (220)
                      ++|||+|+...+.   .                           ..+++..++..             ..+.+++|||++
T Consensus       289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d  368 (402)
T 1azs_C          289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD  368 (402)
T ss_dssp             EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred             EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence            9999999853221   1                           13556665421             135667899999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREIYS  177 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~  177 (220)
                      +.|+.++|+++.+.+.+
T Consensus       369 ~~nV~~vF~~v~~~I~~  385 (402)
T 1azs_C          369 TENIRRVFNDCRDIIQR  385 (402)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999888764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.53  E-value=8.6e-17  Score=141.52  Aligned_cols=76  Identities=8%  Similarity=0.093  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhC--CeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCC
Q 027703          140 EEGKSLAEEEG--LFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSK  209 (220)
Q Consensus       140 ~~~~~~~~~~~--~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~  209 (220)
                      ..|++++.+|+  +.++|  ||++|+.+...+++.|.++..++.+++++|||++.+. .||++++|      ++|+++.+
T Consensus       212 ~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i~~~  290 (670)
T 3ux8_A          212 RLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAA  290 (670)
T ss_dssp             HHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSEEEE
T ss_pred             HHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEecccccccCCEEEEe
Confidence            33889999988  99999  9999999999999999988767899999999999876 59999999      89999999


Q ss_pred             CCCcccc
Q 027703          210 GSMMDFS  216 (220)
Q Consensus       210 g~~~~~~  216 (220)
                      |+++++.
T Consensus       291 g~~~~~~  297 (670)
T 3ux8_A          291 GTPEEVM  297 (670)
T ss_dssp             ECHHHHH
T ss_pred             cCHHHHh
Confidence            9887753

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.53  E-value=5.1e-15  Score=118.26  Aligned_cols=134  Identities=19%  Similarity=0.154  Sum_probs=106.2

Q ss_pred             HHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcc-cHHHHH
Q 027703           29 NLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRS-SFDSVK  106 (220)
Q Consensus        29 Tll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~  106 (220)
                      +|+.++....|. ..+.+|++.... ..+..++   .+.+||+  ++++..++..+++++|++++|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688888888898 888899884433 2222222   6789999  7788888889999999999999999987 788898


Q ss_pred             HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC--CeEEEeccCCCCCHHHHHHHHHH
Q 027703          107 RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG--LFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus       107 ~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      .|+..+..   ...|+++++||+|+...+.  .+++..++...+  ..++++||+++.|++++|+++..
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            99887654   3689999999999875332  244666666666  89999999999999999988753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.6e-15  Score=131.29  Aligned_cols=69  Identities=13%  Similarity=0.117  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANS  207 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~  207 (220)
                      ...|++++.++++.++|  +|++|+.....+++++.++..++.+++++||+++++..+||++++|++|..+
T Consensus       230 v~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~  300 (608)
T 3j16_B          230 FAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV  300 (608)
T ss_dssp             HHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred             HHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccc
Confidence            44488999999999999  9999999999999999988777899999999999999999999999987643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.50  E-value=1.2e-15  Score=130.63  Aligned_cols=68  Identities=13%  Similarity=0.142  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANS  207 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~  207 (220)
                      ...|++++.++++.++|  ||++|......++++|.++.. +.+++++||+++++..+||++++|++|...
T Consensus       147 v~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~~~  216 (538)
T 3ozx_A          147 LLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGESSV  216 (538)
T ss_dssp             HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEETTT
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCccc
Confidence            34488999999999999  999999999999999888765 899999999999999999999999987543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.50  E-value=1.7e-13  Score=111.59  Aligned_cols=163  Identities=12%  Similarity=0.098  Sum_probs=90.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCC-------ccc-----------------------ceeeeeE--EEE---
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNS-------KAT-----------------------IGVEFQT--QVV---   56 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~-------~~t-----------------------~~~~~~~--~~i---   56 (220)
                      .....|+|+|+||||||||+|+|.+...+...       +++                       .......  +.+   
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~  151 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV  151 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence            44688999999999999999999873211100       000                       0000000  000   


Q ss_pred             E---------eCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEe
Q 027703           57 D---------IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGN  127 (220)
Q Consensus        57 ~---------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~  127 (220)
                      +         +....+.+.++||+|....   ...+...+|.+++|+|.+.....+.+..   .+     -..|.+++.|
T Consensus       152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlN  220 (349)
T 2www_A          152 TRTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVT  220 (349)
T ss_dssp             CTTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEEC
T ss_pred             hHHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEe
Confidence            0         0012246688999996422   2345678999999999876533222211   11     1347788999


Q ss_pred             cCCCCCCCCCCHHHHHHHHH----------HhCCeEEEeccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhh
Q 027703          128 KCDLDSIRDVSTEEGKSLAE----------EEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYK  190 (220)
Q Consensus       128 k~Dl~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~  190 (220)
                      |+|+...... ......+..          .+..+++.+|++++.|+.+++++|.+.+..    ++.+|.+..
T Consensus       221 K~Dl~~~~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~----~~~~~~~~~  288 (349)
T 2www_A          221 KSDGDLIVPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL----MLASGELTA  288 (349)
T ss_dssp             CCSGGGHHHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH----HHHHSHHHH
T ss_pred             eecCCCchhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH----HhhCchHHH
Confidence            9997531100 001112211          124577889999999999999999988753    234555544

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.49  E-value=1.3e-13  Score=104.99  Aligned_cols=153  Identities=14%  Similarity=0.112  Sum_probs=93.5

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeee-----------E-EEEEeCC------------------eE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQ-----------T-QVVDIDG------------------KE   62 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~-----------~-~~i~~~~------------------~~   62 (220)
                      ...+++++|.+|||||||+++|.+..........+..++.           . ..+.++.                  ..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            3578999999999999999999876322211111110000           0 0011111                  12


Q ss_pred             EEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHH
Q 027703           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEG  142 (220)
Q Consensus        63 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~  142 (220)
                      ..+.+||++|+....   ..+....+..++|+|+.+....  ...+...   .   ..|.++++||+|+...+....++.
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence            456788998852111   0111346778999998765321  1111111   1   357789999999864333456666


Q ss_pred             HHHHHH--hCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          143 KSLAEE--EGLFFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       143 ~~~~~~--~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      ...+..  +.++++.+|++++.|+.+++++|.+.+.
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~  213 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN  213 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence            666654  3578999999999999999999987664

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.49  E-value=2.4e-14  Score=116.84  Aligned_cols=155  Identities=14%  Similarity=0.119  Sum_probs=90.4

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc------ccce-------------------------------------
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK------ATIG-------------------------------------   48 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~------~t~~-------------------------------------   48 (220)
                      ...++|+|+|.+|||||||+++|.+..+.+...      ++..                                     
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            345799999999999999999999988743221      2100                                     


Q ss_pred             ------eeeeEEEEEeC-CeEEEEEEEecCCcch-------------hhhhhHHhhcCCcEEEE-EEeCCCcccHHHHHH
Q 027703           49 ------VEFQTQVVDID-GKEVKAQIWDTAGQER-------------FRAVTSAYYRGAVGALV-VYDITRRSSFDSVKR  107 (220)
Q Consensus        49 ------~~~~~~~i~~~-~~~~~~~~~d~~g~~~-------------~~~~~~~~~~~~~~~i~-v~d~~~~~~~~~~~~  107 (220)
                            +......+.+. .....+.+|||||...             +......++..++.+++ +.+++....-.....
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                  00000011111 1124688999999632             23345556666655554 555544222222212


Q ss_pred             HHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh------C-CeEEEeccCCCCCHHHHHHHHHH
Q 027703          108 WLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE------G-LFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus       108 ~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~------~-~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      +   +........|+++|+||.|+........    .++...      + ..++.+||+++.|+.++++.+.+
T Consensus       189 i---~~~~~~~~~~~i~V~NK~Dl~~~~~~~~----~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 V---AKEVDPQGQRTIGVITKLDLMDEGTDAR----DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             H---HHHHCTTCTTEEEEEECGGGSCTTCCCH----HHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             H---HHHhCcCCCceEEEeccccccCcchhHH----HHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2   2223334689999999999865332111    222221      1 13455999999999999998876

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.48  E-value=1.8e-15  Score=129.60  Aligned_cols=67  Identities=16%  Similarity=0.142  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGA  205 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~  205 (220)
                      ...|++++.+|++.++|  ||++|+.+...++++|.++..++.+++++||+++++..+||++++|++|.
T Consensus       167 v~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~  235 (538)
T 1yqt_A          167 VAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEP  235 (538)
T ss_dssp             HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcc
Confidence            33488999999999999  99999999999999999987778999999999999999999999999763

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.47  E-value=1.6e-15  Score=116.05  Aligned_cols=57  Identities=14%  Similarity=0.120  Sum_probs=45.5

Q ss_pred             CcEEEEEecCCCCCCCCCCHHHHHHHHHH--hCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          120 VGRMLVGNKCDLDSIRDVSTEEGKSLAEE--EGLFFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       120 ~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      .|.++++||+|+...+....+++...+..  +..+++++||+++.|+.++++++.+.+.
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            46799999999865434566676666665  3678999999999999999999987764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.45  E-value=2.4e-15  Score=135.18  Aligned_cols=74  Identities=14%  Similarity=0.204  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCC-CCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANS-SKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~-~~g~~~~~  215 (220)
                      ...+++++.++++.++|  ++++|..++..+.+.|.+   .+.+++++||+++++..+||++++|++|+++ ..|+++++
T Consensus       557 vaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~  633 (986)
T 2iw3_A          557 LALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF  633 (986)
T ss_dssp             HHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred             HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence            34477999999999999  999999999999998877   5889999999999999999999999999986 57876554

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.45  E-value=8.6e-16  Score=133.11  Aligned_cols=66  Identities=15%  Similarity=0.156  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDG  204 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G  204 (220)
                      ...|++++.++++.++|  ||++|..+..+++++|.++..++.+++++|||++++..+||++++|++|
T Consensus       237 vaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          237 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             HHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            33488999999999999  9999999999999999988777899999999999999999999999865

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.43  E-value=3.6e-15  Score=134.08  Aligned_cols=68  Identities=18%  Similarity=0.135  Sum_probs=58.3

Q ss_pred             HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCC
Q 027703          141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS  211 (220)
Q Consensus       141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~  211 (220)
                      .+++++.++++.++|  |+++|..+...+.+.|.+.   +.+++++|||++++..+||++++|++|+++..|+
T Consensus       912 LArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          912 LAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             HHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred             HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            377899999999999  9999999888888766544   5799999999999999999999999999998886

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.43  E-value=1.1e-12  Score=117.87  Aligned_cols=118  Identities=21%  Similarity=0.258  Sum_probs=85.3

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCc------------CCC----CCcccceeeeeEEEEEe--------------CC
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNE------------FDS----NSKATIGVEFQTQVVDI--------------DG   60 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~------------~~~----~~~~t~~~~~~~~~i~~--------------~~   60 (220)
                      .....+|+|+|..|+|||||+++|+...            +.+    +..+.+++......+.+              ++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            4567899999999999999999998641            111    01111122222222222              33


Q ss_pred             eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCC
Q 027703           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD  132 (220)
Q Consensus        61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~  132 (220)
                      ..+.+++|||||+.+|...+..+++.+|++++|+|+++..+++....|.... .   ...|+++++||.|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence            4688999999999999999999999999999999999998888865554332 2   357889999999975

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.43  E-value=2.8e-13  Score=110.63  Aligned_cols=104  Identities=13%  Similarity=0.084  Sum_probs=68.5

Q ss_pred             EEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC--HH
Q 027703           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS--TE  140 (220)
Q Consensus        63 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~--~~  140 (220)
                      +.+.++||+|...   ........+|.+++|+|.........+...        ....|.++++||+|+.......  ..
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence            5678999999543   233456889999999998765444332210        1135889999999975321110  01


Q ss_pred             HHHHHHHH-------hCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          141 EGKSLAEE-------EGLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       141 ~~~~~~~~-------~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      +.......       ++.+++.+||+++.|+++++++|.+.+..
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            11111111       14689999999999999999999988754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.42  E-value=3.4e-15  Score=122.73  Aligned_cols=166  Identities=14%  Similarity=0.126  Sum_probs=106.9

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcC-CCCCcccceeeeeEEEEEeCCeE---------------EEEEEEecCCcch
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEF-DSNSKATIGVEFQTQVVDIDGKE---------------VKAQIWDTAGQER   75 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~-~~~~~~t~~~~~~~~~i~~~~~~---------------~~~~~~d~~g~~~   75 (220)
                      ....+++++|+||||||||+|+|++... .....|+.+.++..+.+.+.+..               ..+.+||++|...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            3457999999999999999999999876 45555655677777888776521               3578999999643


Q ss_pred             -------hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 027703           76 -------FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE  148 (220)
Q Consensus        76 -------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~  148 (220)
                             ....+...++.+|+++.|+|..+.                    .+++.+.++.|-       ..+. .++.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d--------------------~~i~~v~~~~dP-------~~di-~ilde  149 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFDD--------------------AEIIHVEGDVDP-------IRDL-SIIVD  149 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCCT--------------------TCSSCCSSSSCH-------HHHH-HHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhcccc--------------------ceeeeeccccCc-------chhh-hhchh
Confidence                   222445567889999999998650                    111112333331       1111 11110


Q ss_pred             hCCeEEEeccCCCCCHHHHHHHHHHH-HHHHhhhhhcCcchhhhccccceee-eeecC-CCCCCCCCc
Q 027703          149 EGLFFMETSALDSTNVEAAFEVVIRE-IYSNISRKVLNSDAYKAELSVNRVT-LVKDG-ANSSKGSMM  213 (220)
Q Consensus       149 ~~~~~~~~Sa~~~~~v~~l~~~l~~~-~~~~~~~~~~~h~~~~~~~~a~~~~-~~~~G-~~~~~g~~~  213 (220)
                            +++..|...+...++.+... ...+.++  ++|.+..+...++++. +|++| +++..|+..
T Consensus       150 ------el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~  209 (392)
T 1ni3_A          150 ------ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS  209 (392)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence                  13344444555555555444 2223333  3899999999999999 99999 888777643

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.41  E-value=1e-12  Score=107.29  Aligned_cols=84  Identities=18%  Similarity=0.167  Sum_probs=57.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCC-------------------eEEEEEEEecCCcch
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG-------------------KEVKAQIWDTAGQER   75 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~-------------------~~~~~~~~d~~g~~~   75 (220)
                      ++++++|++|||||||+++|++........+..+..+..+...+.+                   ....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5799999999999999999998753222222222333334333322                   234788999999865


Q ss_pred             hh-------hhhHHhhcCCcEEEEEEeCCC
Q 027703           76 FR-------AVTSAYYRGAVGALVVYDITR   98 (220)
Q Consensus        76 ~~-------~~~~~~~~~~~~~i~v~d~~~   98 (220)
                      ..       ......++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            32       223446789999999999975

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.41  E-value=6.8e-12  Score=102.52  Aligned_cols=156  Identities=16%  Similarity=0.132  Sum_probs=103.2

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh-------hhhhHH
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF-------RAVTSA   82 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~-------~~~~~~   82 (220)
                      .++...+|+++|.|+||||||+|+|++........|..+.++..+.+.+.+  .++.+.|+||..+.       ......
T Consensus        68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~  145 (376)
T 4a9a_A           68 ARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIA  145 (376)
T ss_dssp             CBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHH
T ss_pred             eecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHH
Confidence            456778999999999999999999999876665556777888888888887  46788999996421       112334


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC--CCCCcEEEEEecCCCCC--------CCCCCHHHHHHHHHHhCCe
Q 027703           83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC--DTAVGRMLVGNKCDLDS--------IRDVSTEEGKSLAEEEGLF  152 (220)
Q Consensus        83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~v~~k~Dl~~--------~~~~~~~~~~~~~~~~~~~  152 (220)
                      ..+.+|++++|+|.+++.  ........++....  ....|..++.||.|...        ......++...+.....+.
T Consensus       146 ~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt  223 (376)
T 4a9a_A          146 VARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRIN  223 (376)
T ss_dssp             HHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCC
T ss_pred             HHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhccc
Confidence            567899999999998753  22222233333321  12345677889999531        2345566676776666553


Q ss_pred             EEEeccCCCCCHHHHHH
Q 027703          153 FMETSALDSTNVEAAFE  169 (220)
Q Consensus       153 ~~~~Sa~~~~~v~~l~~  169 (220)
                      --++.-..+...+++.+
T Consensus       224 ~kpv~~~~nv~eddl~d  240 (376)
T 4a9a_A          224 SAEIAFRCDATVDDLID  240 (376)
T ss_dssp             SEEEEECSCCCHHHHHH
T ss_pred             CCCeeecccCCHHHHHH
Confidence            33333334445555544

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.40  E-value=3e-13  Score=109.60  Aligned_cols=103  Identities=12%  Similarity=0.043  Sum_probs=61.5

Q ss_pred             EEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHH
Q 027703           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEG  142 (220)
Q Consensus        63 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~  142 (220)
                      ..+.++||+|.....   ......+|.+++++|.......+.+.....        ..+.+++.||.|+......+....
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~--------~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIF--------ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHH--------HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHh--------ccccEEEEEchhccCchhHHHHHH
Confidence            567889999975322   234578999999998754322211111111        134567779999643221111122


Q ss_pred             HHHHHH----------hCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          143 KSLAEE----------EGLFFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       143 ~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      ..+...          +..+++.+|++++.|++++++.|.+...
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222221          1356788999999999999999988765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.38  E-value=1.1e-14  Score=128.18  Aligned_cols=76  Identities=12%  Similarity=0.219  Sum_probs=67.4

Q ss_pred             HHHHHHHHhC---CeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCC
Q 027703          141 EGKSLAEEEG---LFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSK  209 (220)
Q Consensus       141 ~~~~~~~~~~---~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~  209 (220)
                      .|++++.+++   +.++|  |+++|+.+..++++.+.++..++.+++++|||++.+. +||++++|      ++|+++.+
T Consensus       554 iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~  632 (670)
T 3ux8_A          554 LAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAV  632 (670)
T ss_dssp             HHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEe
Confidence            3778887764   88999  9999999999999999988767899999999999875 69999999      89999999


Q ss_pred             CCCccccc
Q 027703          210 GSMMDFSC  217 (220)
Q Consensus       210 g~~~~~~~  217 (220)
                      |+++++..
T Consensus       633 g~~~~~~~  640 (670)
T 3ux8_A          633 GTPEEVAE  640 (670)
T ss_dssp             ECHHHHHT
T ss_pred             cCHHHHHh
Confidence            99988743

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.38  E-value=1.4e-12  Score=112.04  Aligned_cols=117  Identities=18%  Similarity=0.168  Sum_probs=79.0

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCC---CCCcccceeeeeEEEEEeCCe--------------------------
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFD---SNSKATIGVEFQTQVVDIDGK--------------------------   61 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~---~~~~~t~~~~~~~~~i~~~~~--------------------------   61 (220)
                      ....++|+|+|.+|+|||||+|+|++..+.   ....++.+. . . .+...+.                          
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~-~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~  138 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-F-V-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT  138 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-E-E-EEECCSSSEEECCC------------------C
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-E-E-EEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence            345689999999999999999999998874   222222211 0 0 0000000                          


Q ss_pred             ----E----------EEEEEEecCCcch-----------hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC
Q 027703           62 ----E----------VKAQIWDTAGQER-----------FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC  116 (220)
Q Consensus        62 ----~----------~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~  116 (220)
                          .          ..+.+|||||...           +......++..+|++++|+|+++.........++..+.   
T Consensus       139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~---  215 (550)
T 2qpt_A          139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR---  215 (550)
T ss_dssp             CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---
T ss_pred             ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---
Confidence                0          2478999999864           34455667889999999999987555555555555443   


Q ss_pred             CCCCcEEEEEecCCCCC
Q 027703          117 DTAVGRMLVGNKCDLDS  133 (220)
Q Consensus       117 ~~~~~~~~v~~k~Dl~~  133 (220)
                      ....|+++|+||+|+..
T Consensus       216 ~~~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          216 GHEDKIRVVLNKADMVE  232 (550)
T ss_dssp             TCGGGEEEEEECGGGSC
T ss_pred             hcCCCEEEEEECCCccC
Confidence            23478999999999764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.35  E-value=1.5e-11  Score=95.86  Aligned_cols=112  Identities=14%  Similarity=-0.047  Sum_probs=67.6

Q ss_pred             EEEEEEecCCcchhhhhh------HHhhcCCcEEEEEEeCCCcccHHHHHHHHHH-HHhhCCCCCcEEEEEecCCCCCCC
Q 027703           63 VKAQIWDTAGQERFRAVT------SAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDSIR  135 (220)
Q Consensus        63 ~~~~~~d~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~v~~k~Dl~~~~  135 (220)
                      +.+.+|||+|........      ...+.. +.++++.|................ .........|+++++||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            468899999986543221      123355 778888887554443332221111 111111247889999999976422


Q ss_pred             CCCHHHHHHH----------------------------HHHh--CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          136 DVSTEEGKSL----------------------------AEEE--GLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       136 ~~~~~~~~~~----------------------------~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      .  .++...+                            +...  ..+++.+|++++.|+++++++|.+.+..
T Consensus       188 ~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          188 E--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             H--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             c--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            1  1111111                            1222  3478999999999999999999988764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.35  E-value=6.3e-13  Score=107.94  Aligned_cols=103  Identities=17%  Similarity=0.121  Sum_probs=63.5

Q ss_pred             EEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCH--H
Q 027703           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVST--E  140 (220)
Q Consensus        63 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~--~  140 (220)
                      +.+.++||+|......   .....+|.+++|+|.+....++.+..   ..     ...|.++++||.|+........  +
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            5688999999754332   35689999999999865433221111   00     1257789999999764211100  1


Q ss_pred             HHHHHHHHh-------CCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          141 EGKSLAEEE-------GLFFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       141 ~~~~~~~~~-------~~~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      +.+......       ..+++.+||+++.|+++++++|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            111111111       357889999999999999999998764

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.35  E-value=4.5e-11  Score=102.60  Aligned_cols=116  Identities=19%  Similarity=0.176  Sum_probs=83.1

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCc----------------------CCCCCcccceeeeeEEEEEeCCeEEEEEEEec
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNE----------------------FDSNSKATIGVEFQTQVVDIDGKEVKAQIWDT   70 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~----------------------~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~   70 (220)
                      ..-+|+|+|..++|||||..+|+...                      -+.+..+.+++......+.+.+  ..+++.||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            45679999999999999999995210                      1112223333333344455554  67889999


Q ss_pred             CCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703           71 AGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI  134 (220)
Q Consensus        71 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~  134 (220)
                      ||+.+|.......++.+|+.++|+|+.....-+....| .....   ..+|.+++.||.|...+
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchhc
Confidence            99999999999999999999999999998777776555 33333   26899999999997643

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.28  E-value=4.7e-12  Score=103.90  Aligned_cols=89  Identities=13%  Similarity=0.126  Sum_probs=54.2

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe---------------EEEEEEEecCCcchhh
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK---------------EVKAQIWDTAGQERFR   77 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~---------------~~~~~~~d~~g~~~~~   77 (220)
                      ..++++++|+||||||||+|+|++..+.....++.+..+..+.+.+.+.               ...+.+||++|.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4589999999999999999999998775555555666666677766542               2358999999987543


Q ss_pred             h-------hhHHhhcCCcEEEEEEeCCCccc
Q 027703           78 A-------VTSAYYRGAVGALVVYDITRRSS  101 (220)
Q Consensus        78 ~-------~~~~~~~~~~~~i~v~d~~~~~~  101 (220)
                      .       .+..+++.+|++++|+|+++..+
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            3       45667899999999999876444

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.25  E-value=4.1e-14  Score=126.97  Aligned_cols=75  Identities=15%  Similarity=0.213  Sum_probs=66.2

Q ss_pred             HHHHHHHh---CCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCCC
Q 027703          142 GKSLAEEE---GLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSKG  210 (220)
Q Consensus       142 ~~~~~~~~---~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~g  210 (220)
                      |+++++++   .+.++|  ||++|...+..+++.|.++..++.|+++++|+++.+.. ||+|++|      ++|+|+++|
T Consensus       817 AraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~G  895 (916)
T 3pih_A          817 ASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATG  895 (916)
T ss_dssp             HHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEE
T ss_pred             HHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEc
Confidence            55666554   588999  99999999999999998887779999999999999875 9999999      999999999


Q ss_pred             CCccccc
Q 027703          211 SMMDFSC  217 (220)
Q Consensus       211 ~~~~~~~  217 (220)
                      +++++..
T Consensus       896 tpeel~~  902 (916)
T 3pih_A          896 TPEEIAK  902 (916)
T ss_dssp             SHHHHHS
T ss_pred             CHHHHHh
Confidence            9998754

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.24  E-value=4.4e-11  Score=105.36  Aligned_cols=156  Identities=15%  Similarity=0.123  Sum_probs=93.3

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeee---------------------------------------
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQ---------------------------------------   52 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~---------------------------------------   52 (220)
                      ....+|+|+|..++|||||+|+|.+..+-+.+....+..+.                                       
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            45679999999999999999999998773322211111000                                       


Q ss_pred             ----------EEEEEeC-CeEEEEEEEecCCcch-------------hhhhhHHhh-cCCcEEEEEEeCCCcccHHHHHH
Q 027703           53 ----------TQVVDID-GKEVKAQIWDTAGQER-------------FRAVTSAYY-RGAVGALVVYDITRRSSFDSVKR  107 (220)
Q Consensus        53 ----------~~~i~~~-~~~~~~~~~d~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~  107 (220)
                                ...+.+. .....+.++||||...             .......+. ..+|.+++|.|++......+...
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                      0011110 0012467899999643             111223333 57899999999987543333222


Q ss_pred             HHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh----CC---eEEEeccCCCCCHHHHHHHHHHH
Q 027703          108 WLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE----GL---FFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus       108 ~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~----~~---~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      ++..+   .....|+++|.||.|+........    .+....    ..   .++.+||+++.|++++++.+.+.
T Consensus       209 ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~----~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEV---DPQGQRTIGVITKLDLMDEGTDAR----DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHH---CTTCSSEEEEEECTTSSCTTCCSH----HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHH---HhcCCCEEEEEeCcccCCcchhhH----HHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            33333   234579999999999865333222    122211    11   23349999999999999988763

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.19  E-value=2.4e-12  Score=102.43  Aligned_cols=136  Identities=18%  Similarity=0.097  Sum_probs=82.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      .++|+||+|||||||++.|.+..              .|.+.          ...++...   ++..-....+ +.+..+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl~--------------~G~I~----------~~v~q~~~---lf~~ti~~~n-i~~~~~  179 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHFL--------------GGSVL----------SFANHKSH---FWLASLADTR-AALVDD  179 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH--------------TCEEE----------CGGGTTSG---GGGGGGTTCS-CEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHhhhc--------------CceEE----------EEecCccc---cccccHHHHh-hccCcc
Confidence            68999999999999999999973              12221          11221111   1111122111 122223


Q ss_pred             CCCcccHHHHHHHHHH-HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703           96 ITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      .++     .+..++.. +.....  ..-++.|.|+.   ++        +++.+|++.+  ||++|..+...+..     
T Consensus       180 ~~~-----~~~~~i~~~L~~gld--g~~LSgGqkQR---AR--------All~~p~iLl--Ts~LD~~~~~~i~~-----  234 (305)
T 2v9p_A          180 ATH-----ACWRYFDTYLRNALD--GYPVSIDRKHK---AA--------VQIKAPPLLV--TSNIDVQAEDRYLY-----  234 (305)
T ss_dssp             ECH-----HHHHHHHHTTTGGGG--TCCEECCCSSC---CC--------CEECCCCEEE--EESSCSTTCGGGGG-----
T ss_pred             ccH-----HHHHHHHHHhHccCC--ccCcCHHHHHH---HH--------HHhCCCCEEE--ECCCCHHHHHHHHH-----
Confidence            221     22233333 211111  23477787777   34        7888888877  99999999877751     


Q ss_pred             HHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          175 IYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       175 ~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                               ++|++..+ ..||++ +|++|++++.|+++++
T Consensus       235 ---------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el  264 (305)
T 2v9p_A          235 ---------LHSRVQTF-RFEQPC-TDESGEQPFNITDADW  264 (305)
T ss_dssp             ---------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred             ---------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence                     39998875 589999 9999999999998775

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.16  E-value=2.9e-13  Score=113.67  Aligned_cols=68  Identities=10%  Similarity=-0.004  Sum_probs=55.1

Q ss_pred             HHH--HHHHhCC----eEEE---eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchh------hhccccce-----eee
Q 027703          142 GKS--LAEEEGL----FFME---TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAY------KAELSVNR-----VTL  200 (220)
Q Consensus       142 ~~~--~~~~~~~----~~~~---~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~------~~~~~a~~-----~~~  200 (220)
                      +++  ++.++++    .++|   ++++|.. ..    .+.+++.+ +.++++++|+..      ++..+||+     +++
T Consensus       247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~----~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~  321 (460)
T 2npi_A          247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LA----ELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFF  321 (460)
T ss_dssp             HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CH----HHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEE
T ss_pred             HHHHHhccCcccCcceEEEeCCcccccChh-HH----HHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEE
Confidence            667  9999999    9998   6889988 33    33344443 788999999988      88899999     999


Q ss_pred             ee-cCCCCCCCCCccc
Q 027703          201 VK-DGANSSKGSMMDF  215 (220)
Q Consensus       201 ~~-~G~~~~~g~~~~~  215 (220)
                      |+ +|+++ .|+++++
T Consensus       322 l~k~G~iv-~g~~~~~  336 (460)
T 2npi_A          322 IPKLDGVS-AVDDVYK  336 (460)
T ss_dssp             ECCCTTCC-CCCHHHH
T ss_pred             EeCCCcEE-ECCHHHH
Confidence            99 99999 8887665

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.15  E-value=9.6e-11  Score=95.86  Aligned_cols=73  Identities=21%  Similarity=0.195  Sum_probs=61.0

Q ss_pred             CCCCHHH------HHHHH------HHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeee
Q 027703          135 RDVSTEE------GKSLA------EEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTL  200 (220)
Q Consensus       135 ~~~~~~~------~~~~~------~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~  200 (220)
                      ..++..+      +++++      .+|++.++|  ++++|+.....+++.+.++...+.+++++||+++. ...||++++
T Consensus       278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~~~  356 (365)
T 3qf7_A          278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRKLR  356 (365)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCEEE
T ss_pred             hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEEEE
Confidence            3455554      55555      478899999  99999999999999988876668999999999998 567999999


Q ss_pred             eecCCCCC
Q 027703          201 VKDGANSS  208 (220)
Q Consensus       201 ~~~G~~~~  208 (220)
                      |++|+++.
T Consensus       357 l~~G~i~~  364 (365)
T 3qf7_A          357 ITGGVVVN  364 (365)
T ss_dssp             EETTEEC-
T ss_pred             EECCEEEe
Confidence            99999875

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.14  E-value=2.5e-09  Score=94.61  Aligned_cols=121  Identities=19%  Similarity=0.159  Sum_probs=83.7

Q ss_pred             CCceeeEEEEEECCCCCcHHHHHHHHhhCc--------------CC----CCCcccceeeeeEEEEEeCC-----eEEEE
Q 027703            9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNE--------------FD----SNSKATIGVEFQTQVVDIDG-----KEVKA   65 (220)
Q Consensus         9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~--------------~~----~~~~~t~~~~~~~~~i~~~~-----~~~~~   65 (220)
                      .+-+.+-+|+|+|..++|||||..+|+...              +.    .+..+.+++......+.+.+     +.+.+
T Consensus         8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i   87 (709)
T 4fn5_A            8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV   87 (709)
T ss_dssp             SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred             CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence            334567789999999999999999995221              11    11122223333333444422     35789


Q ss_pred             EEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703           66 QIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS  133 (220)
Q Consensus        66 ~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~  133 (220)
                      ++.||||+.+|.......++-+|+.++|+|+.....-+....|......    .+|.+++.||.|...
T Consensus        88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred             EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccC
Confidence            9999999999999999999999999999999987777665544333322    578899999999753

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.12  E-value=1e-13  Score=123.39  Aligned_cols=75  Identities=11%  Similarity=0.187  Sum_probs=65.9

Q ss_pred             HHHHHHH---hCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCCC
Q 027703          142 GKSLAEE---EGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSKG  210 (220)
Q Consensus       142 ~~~~~~~---~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~g  210 (220)
                      |++++.+   +++.++|  |+++|...+.++++.|.++..++.+++++||+++++ ..||++++|      ++|+++..|
T Consensus       742 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g  820 (842)
T 2vf7_A          742 ATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQG  820 (842)
T ss_dssp             HHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEE
T ss_pred             HHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEc
Confidence            5566664   5788999  999999999999999998887799999999999999 689999999      799999999


Q ss_pred             CCccccc
Q 027703          211 SMMDFSC  217 (220)
Q Consensus       211 ~~~~~~~  217 (220)
                      +++++..
T Consensus       821 ~~~el~~  827 (842)
T 2vf7_A          821 TPAEVAQ  827 (842)
T ss_dssp             CHHHHTT
T ss_pred             CHHHHHh
Confidence            9887653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.07  E-value=1.1e-10  Score=96.53  Aligned_cols=111  Identities=14%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeee--EEEEEeCCeEEEEEEEecCCcchhhhhhHHh-----hcCC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQ--TQVVDIDGKEVKAQIWDTAGQERFRAVTSAY-----YRGA   87 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~--~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~-----~~~~   87 (220)
                      ..++++|+||||||||+|.|.|...+..+..+.+....  .+.+.-....-.+.+||++|..........+     +...
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~  149 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY  149 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence            47999999999999999999998766655433321110  0111111111146778999854211111111     1223


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCC
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL  131 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl  131 (220)
                      +..+. ++... ...+++. ....+..   ...|++++.||.|+
T Consensus       150 ~~~~~-lS~G~-~~kqrv~-la~aL~~---~~~p~~lV~tkpdl  187 (413)
T 1tq4_A          150 DFFII-ISATR-FKKNDID-IAKAISM---MKKEFYFVRTKVDS  187 (413)
T ss_dssp             SEEEE-EESSC-CCHHHHH-HHHHHHH---TTCEEEEEECCHHH
T ss_pred             CCeEE-eCCCC-ccHHHHH-HHHHHHh---cCCCeEEEEecCcc
Confidence            43333 55532 1222221 1122222   24688899999885

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.03  E-value=1.8e-10  Score=100.65  Aligned_cols=114  Identities=18%  Similarity=0.208  Sum_probs=78.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC--cCCCC------------C----cccceeeeeEEEEEeCCeEEEEEEEecCCcchh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN--EFDSN------------S----KATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF   76 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~--~~~~~------------~----~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~   76 (220)
                      -+|+|+|..++|||||..+|+..  .....            .    .+.+++......+.+  +...+++.||||+.+|
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW--ENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC--SSCBCCCEECCCSSST
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE--CCEEEEEEECCCcHHH
Confidence            36899999999999999999532  11110            0    012222222222333  3467889999999999


Q ss_pred             hhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703           77 RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI  134 (220)
Q Consensus        77 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~  134 (220)
                      .......++.+|+.++|+|+.....-+....| ......   .+|.+++.||.|....
T Consensus        81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~a  134 (638)
T 3j25_A           81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNGI  134 (638)
T ss_dssp             HHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSSC
T ss_pred             HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEeccccccC
Confidence            99999999999999999999887665554333 333333   4677888999997643

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.03  E-value=2.2e-11  Score=101.30  Aligned_cols=66  Identities=17%  Similarity=0.064  Sum_probs=58.5

Q ss_pred             HHHHHHHh--CCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee----ecCCCCCC
Q 027703          142 GKSLAEEE--GLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV----KDGANSSK  209 (220)
Q Consensus       142 ~~~~~~~~--~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~----~~G~~~~~  209 (220)
                      +++++.++  ++.++|  ++++|+.....+.+.|.++. ++.+++++||++..+ ..||++++|    ++|+++..
T Consensus       307 A~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~G~~~~~  380 (415)
T 4aby_A          307 AVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHHHYKVEKQVEDGRTVSH  380 (415)
T ss_dssp             HHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSEEEEEEEEEETTEEEEE
T ss_pred             HHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCeEEEEEEeccCCceEEE
Confidence            77888888  999999  99999999999999998876 689999999999876 579999999    99987654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.02  E-value=6.8e-10  Score=88.55  Aligned_cols=98  Identities=15%  Similarity=0.098  Sum_probs=76.5

Q ss_pred             cchhhhhhHHhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC-HHHHHHHHHHhC
Q 027703           73 QERFRAVTSAYYRGAVGALVVYDITRRS-SFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS-TEEGKSLAEEEG  150 (220)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~-~~~~~~~~~~~~  150 (220)
                      ++++......++.++|.+++|+|++++. ++..+.+|+..+..   ...|.++++||+|+...+.+. .++..++....+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            3455566667899999999999999885 89988899887654   357889999999986432212 344556666778


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHH
Q 027703          151 LFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus       151 ~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      .+++.+||+++.|++++++.+..
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTTT
T ss_pred             CeEEEEECCCCCCHHHHHhhccC
Confidence            89999999999999999987653

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.01  E-value=9.8e-12  Score=91.08  Aligned_cols=55  Identities=5%  Similarity=-0.089  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCC----------------CHHHHHHHHHHHHHHHhhhhhcCcchhhhcc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDST----------------NVEAAFEVVIREIYSNISRKVLNSDAYKAEL  193 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~----------------~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~  193 (220)
                      ...|+++..++.+.++|  ++++|..                ...++.+.+.++..++.+++++||+++++..
T Consensus        92 v~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~  164 (171)
T 4gp7_A           92 IEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE  164 (171)
T ss_dssp             HHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred             HHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence            44466777777888888  8999988                5578888877777779999999999999864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.98  E-value=8.8e-13  Score=99.65  Aligned_cols=42  Identities=10%  Similarity=-0.050  Sum_probs=32.9

Q ss_pred             CCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeee
Q 027703          161 STNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVK  202 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~  202 (220)
                      +.....+.+.+.++..+ +.+++++|||++++..+||++++|.
T Consensus       160 ~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          160 DVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             HHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence            34666777777666543 7899999999999999999999985

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.96  E-value=5.2e-11  Score=96.64  Aligned_cols=59  Identities=7%  Similarity=0.005  Sum_probs=50.4

Q ss_pred             eccCCCCCHHHHHHHHHHHHH--HHh-----hhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          156 TSALDSTNVEAAFEVVIREIY--SNI-----SRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       156 ~Sa~~~~~v~~l~~~l~~~~~--~~~-----~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ++++|+....++.+.+.+...  .+.     ++++.+||++  ..+||++.+|.+|+++.+++.+++.
T Consensus       189 t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~~  254 (347)
T 2obl_A          189 RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEEN  254 (347)
T ss_dssp             BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHcC
Confidence            899999999999887776653  366     8999999999  6789999999999999999877653

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.94  E-value=1.7e-09  Score=80.71  Aligned_cols=103  Identities=7%  Similarity=-0.026  Sum_probs=68.8

Q ss_pred             CCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHH----hhC-CCCCcEEEEEecC-CCCCCCCCCHHHHHH
Q 027703           71 AGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT----THC-DTAVGRMLVGNKC-DLDSIRDVSTEEGKS  144 (220)
Q Consensus        71 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~----~~~-~~~~~~~~v~~k~-Dl~~~~~~~~~~~~~  144 (220)
                      +|+...+..|..|+.+.|++|||+|++|...++ ....+.++.    ... ....|+++.+||+ |++.  ..+..+...
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence            367788899999999999999999999876544 333333322    111 2468999999995 7765  445555333


Q ss_pred             HHH----HhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          145 LAE----EEGLFFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       145 ~~~----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      .+.    +..+.+..|||++|.|+.+.++||.+.+.
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            322    23567888999999999999999986653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.92  E-value=3.4e-11  Score=100.60  Aligned_cols=59  Identities=10%  Similarity=0.015  Sum_probs=51.0

Q ss_pred             eccCCCCCHHHHHHHHHHHHH---H-Hh-----hhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          156 TSALDSTNVEAAFEVVIREIY---S-NI-----SRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       156 ~Sa~~~~~v~~l~~~l~~~~~---~-~~-----~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ++++|+....++.+.+.++..   + +.     ++++++||++  ..+||++++|.+|+++.+|+++++.
T Consensus       276 t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~  343 (438)
T 2dpy_A          276 TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEAG  343 (438)
T ss_dssp             SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHTT
T ss_pred             cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHcc
Confidence            999999999999998877655   3 53     8999999999  6789999999999999998876654

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.91  E-value=1.6e-09  Score=87.17  Aligned_cols=62  Identities=13%  Similarity=0.185  Sum_probs=50.5

Q ss_pred             HHHHH----HHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhcccccee--eeeecCC
Q 027703          142 GKSLA----EEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRV--TLVKDGA  205 (220)
Q Consensus       142 ~~~~~----~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~--~~~~~G~  205 (220)
                      +++++    ..+++.++|  ++++|+.....+++.+.++ .++.+++++||+.. +...||++  ++|.+|.
T Consensus       231 a~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~tH~~~-~~~~~d~~~~v~~~~g~  300 (322)
T 1e69_A          231 ALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SKHTQFIVITHNKI-VMEAADLLHGVTMVNGV  300 (322)
T ss_dssp             HHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TTTSEEEEECCCTT-GGGGCSEEEEEEESSSC
T ss_pred             HHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHH-HHhhCceEEEEEEeCCE
Confidence            66665    356788999  9999999999999988776 45788999999964 56789987  8888886

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.84  E-value=1.8e-08  Score=79.05  Aligned_cols=30  Identities=27%  Similarity=0.585  Sum_probs=24.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNS   43 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~   43 (220)
                      .++++++|+||||||||+|.|++...+..+
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G   31 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKA   31 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC----
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            589999999999999999999998766544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.80  E-value=5.3e-10  Score=85.26  Aligned_cols=42  Identities=14%  Similarity=0.037  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHH-HhhhhhcCcchh----hhccccceeeeeecCC
Q 027703          164 VEAAFEVVIREIYS-NISRKVLNSDAY----KAELSVNRVTLVKDGA  205 (220)
Q Consensus       164 v~~l~~~l~~~~~~-~~~~~~~~h~~~----~~~~~a~~~~~~~~G~  205 (220)
                      +.++++.+.++..+ +.++++++|...    .+..+||++++|++|+
T Consensus       155 ~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          155 LAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             HHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence            34677878877765 899999999555    4899999999999874

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.79  E-value=1e-07  Score=78.93  Aligned_cols=61  Identities=26%  Similarity=0.512  Sum_probs=35.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcc--cceeeeeEEEEEeC--CeEEEEEEEecCCcc
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKA--TIGVEFQTQVVDID--GKEVKAQIWDTAGQE   74 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~--t~~~~~~~~~i~~~--~~~~~~~~~d~~g~~   74 (220)
                      .++++|+|+||||||||+|.|+|..+......  +.+.......+.+.  +-...+.++|+++..
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g  106 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG  106 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence            36799999999999999999999864322111  01111112222222  222367788888753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.77  E-value=1.1e-10  Score=88.22  Aligned_cols=63  Identities=11%  Similarity=0.070  Sum_probs=43.0

Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeec
Q 027703          126 GNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKD  203 (220)
Q Consensus       126 ~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~  203 (220)
                      |.|+.+..++        +++.++++.++|  +|+    +...+.+.+.++ .++.+++ +|||++.+..    ...++|
T Consensus       108 Gq~qrv~lAr--------aL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~----~~~~~~  169 (208)
T 3b85_A          108 VEVAPLAYMR--------GRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL----PGGQKS  169 (208)
T ss_dssp             EEEEEGGGGT--------TCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC----------------
T ss_pred             chHHHHHHHH--------HHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC----cCCCCC
Confidence            8888887777        889999999999  877    888898888877 5578888 9999987653    445677


Q ss_pred             CCC
Q 027703          204 GAN  206 (220)
Q Consensus       204 G~~  206 (220)
                      |..
T Consensus       170 G~~  172 (208)
T 3b85_A          170 GLR  172 (208)
T ss_dssp             CCH
T ss_pred             cHH
Confidence            753

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.77  E-value=1.8e-08  Score=78.71  Aligned_cols=104  Identities=8%  Similarity=-0.024  Sum_probs=72.8

Q ss_pred             cCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHH---HH-hhC-CCCCcEEEEEec-CCCCCCCCCCHHHHH
Q 027703           70 TAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE---LT-THC-DTAVGRMLVGNK-CDLDSIRDVSTEEGK  143 (220)
Q Consensus        70 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~---l~-~~~-~~~~~~~~v~~k-~Dl~~~~~~~~~~~~  143 (220)
                      .+|+...+..|..|+.+.|++|||+|++|.+.++ ....+.+   +. ... ....|+++.+|| +|++.  ..+..+..
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence            3567788899999999999999999999987654 3232222   22 211 246899999996 68865  34555533


Q ss_pred             HHHH----HhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          144 SLAE----EEGLFFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       144 ~~~~----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      ..+.    ...+.+..+||++|+|+.+.++||.+.+.
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            3222    23567888999999999999999987664

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.75  E-value=2.1e-10  Score=92.55  Aligned_cols=58  Identities=10%  Similarity=0.058  Sum_probs=39.3

Q ss_pred             HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHH-hhhhhcCcchhhhccccceeeeeecCCCC
Q 027703          141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSN-ISRKVLNSDAYKAELSVNRVTLVKDGANS  207 (220)
Q Consensus       141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~-~~~~~~~h~~~~~~~~a~~~~~~~~G~~~  207 (220)
                      .++++..+|++.++|  ++       .++.+.+. .+..+ .++++++|+.+ +...+||+++|.+|+..
T Consensus       233 la~aL~~~p~ilildE~~~-------~e~~~~l~-~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~~  293 (330)
T 2pt7_A          233 LKSCLRMRPDRIILGELRS-------SEAYDFYN-VLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNSA  293 (330)
T ss_dssp             HHHHTTSCCSEEEECCCCS-------THHHHHHH-HHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSGG
T ss_pred             HHHHhhhCCCEEEEcCCCh-------HHHHHHHH-HHhcCCCEEEEEEcccH-HHHHhhhheehhcCCcc
Confidence            344555566666666  33       23455443 33444 46899999998 77889999999999754

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.73  E-value=3.4e-09  Score=95.70  Aligned_cols=68  Identities=6%  Similarity=-0.055  Sum_probs=53.9

Q ss_pred             HHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH--HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          147 EEEGLFFME--TSALDSTNVEAAFEVVIREIYS--NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       147 ~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~--~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      .++.+.++|  ++++|+.....+...+.+.+.+  +.+++++||+.+.+ .+||++..+++|++...++.+++
T Consensus       740 ~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~~~l  811 (934)
T 3thx_A          740 TKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTEETL  811 (934)
T ss_dssp             CTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEETTEE
T ss_pred             cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecCCcE
Confidence            455667777  8999988777776666666653  78999999996655 68999999999999988877664

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.68  E-value=1.3e-09  Score=80.75  Aligned_cols=69  Identities=7%  Similarity=-0.128  Sum_probs=43.5

Q ss_pred             HHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHhhhhhcCcc-hhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          144 SLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD-AYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       144 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~-~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      .+...+.....+ ..+++..+.. ++.+......+.+++..+|. ++.+...|++|+  ++|+++.+|+++-+-
T Consensus       114 ~l~~R~~~r~~d-~~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~  183 (189)
T 2bdt_A          114 ELLRRDALRKKD-EQMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE  183 (189)
T ss_dssp             HHHHHTTTSCC-----CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred             HHHHHHHhcccc-ccCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence            455555544444 3566666777 66666554345678888998 999999999998  999999999986543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.67  E-value=7.5e-10  Score=94.79  Aligned_cols=64  Identities=11%  Similarity=-0.010  Sum_probs=52.1

Q ss_pred             HHHHHHHhCCeEEE-eccCCCC-----CHHHHHHHHHHHHHHHhhhhhcCcch----------hhhccccceeeeeecCC
Q 027703          142 GKSLAEEEGLFFME-TSALDST-----NVEAAFEVVIREIYSNISRKVLNSDA----------YKAELSVNRVTLVKDGA  205 (220)
Q Consensus       142 ~~~~~~~~~~~~~~-~Sa~~~~-----~v~~l~~~l~~~~~~~~~~~~~~h~~----------~~~~~~a~~~~~~~~G~  205 (220)
                      ++.+..++++.++| ++++|..     ....+.+.+..+...+.++++++|+.          ..+..+||++++|++|+
T Consensus       365 a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          365 SEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            44555667888999 8889988     77777776665555589999999999          78888999999999986

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.66  E-value=4.9e-09  Score=89.77  Aligned_cols=58  Identities=14%  Similarity=0.112  Sum_probs=43.7

Q ss_pred             hCCeEEE--ec-----cCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhh---------ccccceeeeeecCCC
Q 027703          149 EGLFFME--TS-----ALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKA---------ELSVNRVTLVKDGAN  206 (220)
Q Consensus       149 ~~~~~~~--~S-----a~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~---------~~~a~~~~~~~~G~~  206 (220)
                      ++..++|  ++     ++|+....++++.+.++...+.++++++|+++++         ..+||++++|++|++
T Consensus       139 ~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~  212 (525)
T 1tf7_A          139 ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE  212 (525)
T ss_dssp             CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred             CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEcc
Confidence            4455666  33     2355677888888877767789999999999985         445999999999654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.65  E-value=5.4e-08  Score=74.00  Aligned_cols=57  Identities=9%  Similarity=0.086  Sum_probs=44.8

Q ss_pred             HhC--CeEEE--eccC--CCCCHHHHHHHHHHHHHH-HhhhhhcCcch--------hhhccccceeeeeecC
Q 027703          148 EEG--LFFME--TSAL--DSTNVEAAFEVVIREIYS-NISRKVLNSDA--------YKAELSVNRVTLVKDG  204 (220)
Q Consensus       148 ~~~--~~~~~--~Sa~--~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~--------~~~~~~a~~~~~~~~G  204 (220)
                      +++  +.++|  ++.+  ++....++++.+.++..+ +.++++++|+.        ..+..+||++++|++.
T Consensus       121 ~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~  192 (235)
T 2w0m_A          121 GYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM  192 (235)
T ss_dssp             CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred             CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence            466  77888  5555  777789999999888766 88999999999        5688899999999875

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.60  E-value=2.9e-07  Score=78.04  Aligned_cols=151  Identities=15%  Similarity=0.098  Sum_probs=82.4

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHh------hCcCCC----CCccc-----------ceeeeeEEEEE-------------e
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFA------RNEFDS----NSKAT-----------IGVEFQTQVVD-------------I   58 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~------~~~~~~----~~~~t-----------~~~~~~~~~i~-------------~   58 (220)
                      ....|+++|++||||||+++.|.      +....-    .+.+.           .+++.......             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            34679999999999999999998      432100    00000           00111110000             0


Q ss_pred             CCeEEEEEEEecCCcchhhh-hh---HHh--hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcE-EEEEecCCC
Q 027703           59 DGKEVKAQIWDTAGQERFRA-VT---SAY--YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR-MLVGNKCDL  131 (220)
Q Consensus        59 ~~~~~~~~~~d~~g~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~v~~k~Dl  131 (220)
                      ....+.+.++||+|...... ..   ...  ...++.+++|+|+........   ....+..    ..|+ .++.||.|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~----~~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD----KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH----HHCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh----hcCceEEEEeCCcc
Confidence            00234678899999753211 11   111  237899999999977543211   1222222    1454 788999996


Q ss_pred             CCCCCCCHHHHHHHHHHhCCeE--E----------------EeccCCCCC-HHHHHHHHHHH
Q 027703          132 DSIRDVSTEEGKSLAEEEGLFF--M----------------ETSALDSTN-VEAAFEVVIRE  174 (220)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~--~----------------~~Sa~~~~~-v~~l~~~l~~~  174 (220)
                      .. +   ...+.+.....+.++  +                .+|++.+.+ +.++++++.+.
T Consensus       253 ~~-~---~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HA-K---GGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CC-C---CTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cc-c---hHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            52 2   122223333444443  1                168888988 88888888755

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.55  E-value=1.2e-08  Score=88.76  Aligned_cols=59  Identities=14%  Similarity=0.026  Sum_probs=43.9

Q ss_pred             eccCCCCCHHHHHHHHHHHHHH--HhhhhhcCcchhhhccc------------cceeeeeecCCCCCCCCCcc
Q 027703          156 TSALDSTNVEAAFEVVIREIYS--NISRKVLNSDAYKAELS------------VNRVTLVKDGANSSKGSMMD  214 (220)
Q Consensus       156 ~Sa~~~~~v~~l~~~l~~~~~~--~~~~~~~~h~~~~~~~~------------a~~~~~~~~G~~~~~g~~~~  214 (220)
                      ++++|+....++.+.+.+++.+  ...+.+++|+++.+...            ...|.|+..+.++..|+.++
T Consensus       162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~  234 (608)
T 3szr_A          162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDK  234 (608)
T ss_dssp             -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTC
T ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHH
Confidence            7889999888999988887654  46678889988754322            24578899999888887654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.51  E-value=7.5e-08  Score=76.33  Aligned_cols=62  Identities=5%  Similarity=0.005  Sum_probs=43.1

Q ss_pred             HHHHhCCeEEE--eccC------CC-CCHHHHHHHHHHHHHH-HhhhhhcCcch--h--------------------hhc
Q 027703          145 LAEEEGLFFME--TSAL------DS-TNVEAAFEVVIREIYS-NISRKVLNSDA--Y--------------------KAE  192 (220)
Q Consensus       145 ~~~~~~~~~~~--~Sa~------~~-~~v~~l~~~l~~~~~~-~~~~~~~~h~~--~--------------------~~~  192 (220)
                      +..++++.++|  ++..      +. ..+.++.+.|.++..+ +.++++++|+.  +                    .+.
T Consensus       144 ~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~  223 (296)
T 1cr0_A          144 SGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALR  223 (296)
T ss_dssp             HTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHH
T ss_pred             HhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhH
Confidence            34456778888  4422      22 4456788888877765 88999999995  5                    678


Q ss_pred             cccceeeeeecCCC
Q 027703          193 LSVNRVTLVKDGAN  206 (220)
Q Consensus       193 ~~a~~~~~~~~G~~  206 (220)
                      .+||++++|++|+.
T Consensus       224 ~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          224 QLSDTIIALERNQQ  237 (296)
T ss_dssp             HHCSEEEEEEEC--
T ss_pred             hhCcEEEEEecCcc
Confidence            89999999999975

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.50  E-value=3.7e-08  Score=78.40  Aligned_cols=57  Identities=12%  Similarity=0.056  Sum_probs=39.4

Q ss_pred             HHHhC--CeEEE-eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCc---------chhhhccccceeeeeecCCCCC
Q 027703          146 AEEEG--LFFME-TSALDSTNVEAAFEVVIREIYS-NISRKVLNS---------DAYKAELSVNRVTLVKDGANSS  208 (220)
Q Consensus       146 ~~~~~--~~~~~-~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h---------~~~~~~~~a~~~~~~~~G~~~~  208 (220)
                      +.+|.  +.++| ++++|..+      .+.+.... +.+.+++||         .++.+......|.++.+|+.+.
T Consensus       217 ~~~P~e~lLvLDptsglD~~~------~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~  286 (302)
T 3b9q_A          217 SGAPNEILLVLDGNTGLNMLP------QAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVE  286 (302)
T ss_dssp             TTCCSEEEEEEEGGGGGGGHH------HHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGG
T ss_pred             ccCCCeeEEEEeCCCCcCHHH------HHHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChh
Confidence            34577  77888 66666542      23333333 788999999         5666667788999999997653

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.49  E-value=2.3e-09  Score=83.63  Aligned_cols=58  Identities=16%  Similarity=0.102  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHhCCeEEE-eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeec
Q 027703          139 TEEGKSLAEEEGLFFME-TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKD  203 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~-~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~  203 (220)
                      ...++++..++++.++| ..  |...+..    +.+....+.++++++|+.+ +...+||+++|..
T Consensus        89 ~~la~aL~~~p~illlDEp~--D~~~~~~----~l~~~~~g~~vl~t~H~~~-~~~~~dri~~l~~  147 (261)
T 2eyu_A           89 DALRAALREDPDVIFVGEMR--DLETVET----ALRAAETGHLVFGTLHTNT-AIDTIHRIVDIFP  147 (261)
T ss_dssp             HHHHHHHHHCCSEEEESCCC--SHHHHHH----HHHHHHTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred             HHHHHHHhhCCCEEEeCCCC--CHHHHHH----HHHHHccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence            44466666667776666 22  3333222    2333445778888999977 5678888877753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.48  E-value=1.1e-08  Score=83.13  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      .++|+||+|||||||++.|.+..
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            69999999999999999998873

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.45  E-value=2.2e-08  Score=91.52  Aligned_cols=70  Identities=11%  Similarity=-0.037  Sum_probs=49.4

Q ss_pred             HHHHHHHhCCeEEE--eccCCCCC-HHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCC--CCCCC
Q 027703          142 GKSLAEEEGLFFME--TSALDSTN-VEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANS--SKGSM  212 (220)
Q Consensus       142 ~~~~~~~~~~~~~~--~Sa~~~~~-v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~--~~g~~  212 (220)
                      +.+++.++.+.++|  ++++|+.. ...++..+..+... +.+++++||+++.+..+++++.++ +|++.  ..|.+
T Consensus       862 al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~  937 (1022)
T 2o8b_B          862 ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC  937 (1022)
T ss_dssp             HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred             HHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence            44566677888888  88888665 34455555555455 788999999999999999999886 58877  44543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.40  E-value=1.6e-07  Score=76.35  Aligned_cols=62  Identities=15%  Similarity=0.107  Sum_probs=41.6

Q ss_pred             HHHHHHHhC--CeEEE-eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCc---------chhhhccccceeeeeecCCCCC
Q 027703          142 GKSLAEEEG--LFFME-TSALDSTNVEAAFEVVIREIYS-NISRKVLNS---------DAYKAELSVNRVTLVKDGANSS  208 (220)
Q Consensus       142 ~~~~~~~~~--~~~~~-~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h---------~~~~~~~~a~~~~~~~~G~~~~  208 (220)
                      +++++.+|.  +.++| ++++|..+.      +.+.... +.+.+++||         .++.+......|.++..|+.+.
T Consensus       270 aral~~~P~e~lLvLDpttglD~~~~------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~  343 (359)
T 2og2_A          270 GKIVSGAPNEILLVLDGNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVE  343 (359)
T ss_dssp             HHHSTTCCSEEEEEEEGGGGGGGHHH------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGG
T ss_pred             HHHHhcCCCceEEEEcCCCCCCHHHH------HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChH
Confidence            334445577  77888 666664422      2333333 788999999         4566667788999999997654


Q ss_pred             C
Q 027703          209 K  209 (220)
Q Consensus       209 ~  209 (220)
                      +
T Consensus       344 D  344 (359)
T 2og2_A          344 D  344 (359)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.39  E-value=5e-08  Score=73.66  Aligned_cols=56  Identities=13%  Similarity=0.167  Sum_probs=38.2

Q ss_pred             hCCeEEE--eccCCCC--------CHHHHHHHHHHHHHH-HhhhhhcCcchh-------------hhccccceeeeeecC
Q 027703          149 EGLFFME--TSALDST--------NVEAAFEVVIREIYS-NISRKVLNSDAY-------------KAELSVNRVTLVKDG  204 (220)
Q Consensus       149 ~~~~~~~--~Sa~~~~--------~v~~l~~~l~~~~~~-~~~~~~~~h~~~-------------~~~~~a~~~~~~~~G  204 (220)
                      +++.++|  ++.+++.        .+.+++..+.++..+ +.++++++|...             .+..+||++++|+..
T Consensus       106 ~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          106 FALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             EEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             CCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence            5556666  4444432        224455556776655 788999999876             456789999999876

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.39  E-value=3.4e-08  Score=80.83  Aligned_cols=110  Identities=13%  Similarity=0.091  Sum_probs=63.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC------cCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-------hhH
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN------EFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-------VTS   81 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~------~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-------~~~   81 (220)
                      .+++++|.+|+|||||+|+|.+.      .......+..+.  ....+.+...   +.+.||||......       ...
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~--~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL--DMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSC--EEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEE--eeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            46999999999999999999986      221121222222  2223333332   57899999643221       111


Q ss_pred             Hhh---cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703           82 AYY---RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS  133 (220)
Q Consensus        82 ~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~  133 (220)
                      ..+   ...+.++++.+....--+..+..    +........|++++.||.|..+
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~  288 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVH  288 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEE
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccc
Confidence            222   66788888888743211111110    1111234578999999999754

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.36  E-value=7.4e-07  Score=68.16  Aligned_cols=42  Identities=7%  Similarity=0.127  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHH-HhhhhhcCcchhhhcc-------------------ccceeeeeecCC
Q 027703          164 VEAAFEVVIREIYS-NISRKVLNSDAYKAEL-------------------SVNRVTLVKDGA  205 (220)
Q Consensus       164 v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~-------------------~a~~~~~~~~G~  205 (220)
                      +.+++..+.++..+ +.++++++|.......                   +||.+++|+.|+
T Consensus       149 ~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~  210 (243)
T 1n0w_A          149 LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR  210 (243)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence            45677777777665 7899999997665433                   899999999874

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.35  E-value=1.2e-07  Score=77.51  Aligned_cols=110  Identities=12%  Similarity=0.104  Sum_probs=61.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCC-------CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh--------h
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDS-------NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------V   79 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~-------~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------~   79 (220)
                      .+++++|.+|+|||||+|+|++.....       ...+.  +......+.+.+.   +.++||||......        .
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPG--TTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCC--eecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence            479999999999999999999864221       11111  1112223333332   57899999743221        1


Q ss_pred             hHHh--hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703           80 TSAY--YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS  133 (220)
Q Consensus        80 ~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~  133 (220)
                      ...+  ....+..+++++.....-+..+..    +........|++++.||.|..+
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~  287 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIH  287 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEE
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccc
Confidence            1111  256677788887632211111100    1111233578999999999764

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.33  E-value=2.9e-06  Score=69.37  Aligned_cols=96  Identities=21%  Similarity=0.219  Sum_probs=69.7

Q ss_pred             cchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHH----HHHHH
Q 027703           73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGK----SLAEE  148 (220)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~----~~~~~  148 (220)
                      .+.|......+++.++.+++|+|++++.     ..|...+..... +.|+++++||.|+... ....++..    .....
T Consensus        56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~  128 (368)
T 3h2y_A           56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQ  128 (368)
T ss_dssp             CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHH
Confidence            4567778888889999999999998742     334444544433 5789999999998642 23333332    33455


Q ss_pred             hCC---eEEEeccCCCCCHHHHHHHHHHHH
Q 027703          149 EGL---FFMETSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       149 ~~~---~~~~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                      .+.   .++.+||+++.|++++++.+.+..
T Consensus       129 ~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          129 LGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             TTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            566   788999999999999999987654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.31  E-value=5.3e-08  Score=87.76  Aligned_cols=74  Identities=9%  Similarity=0.144  Sum_probs=66.4

Q ss_pred             HHHHHHHhC--CeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCCCC
Q 027703          142 GKSLAEEEG--LFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSKGS  211 (220)
Q Consensus       142 ~~~~~~~~~--~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~g~  211 (220)
                      |++++.+++  +.++|  ++++|+.....+++.|.++..++.++++++||++.+.. ||++++|      ++|+++.+|+
T Consensus       476 AraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~  554 (916)
T 3pih_A          476 ATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGT  554 (916)
T ss_dssp             HHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEEC
T ss_pred             HHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeec
Confidence            778887776  88999  99999999999999998887779999999999998865 9999999      9999999999


Q ss_pred             Ccccc
Q 027703          212 MMDFS  216 (220)
Q Consensus       212 ~~~~~  216 (220)
                      ++++.
T Consensus       555 ~~e~~  559 (916)
T 3pih_A          555 VDELL  559 (916)
T ss_dssp             HHHHH
T ss_pred             hhhhh
Confidence            88753

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.30  E-value=1.9e-07  Score=83.40  Aligned_cols=66  Identities=8%  Similarity=-0.081  Sum_probs=48.3

Q ss_pred             HHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH--HhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703          146 AEEEGLFFME--TSALDSTNVEAAFEVVIREIYS--NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM  212 (220)
Q Consensus       146 ~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~--~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~  212 (220)
                      +.++.+.++|  ++++++.....+...+.+.+.+  +.+++++||+.+.+. +||++..+++|++..+...
T Consensus       684 a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~~~~~~~  753 (800)
T 1wb9_A          684 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHLDALEHG  753 (800)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEEEEEEET
T ss_pred             ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEEEEEEcC
Confidence            3456677788  7888887777764444444433  788999999998764 8999999999987765443

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.27  E-value=9.3e-07  Score=69.62  Aligned_cols=58  Identities=26%  Similarity=0.399  Sum_probs=35.7

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcc
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQE   74 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~   74 (220)
                      ...++++++|.+|||||||+|+|.+......+. +..+...  ..+....   .+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcC
Confidence            345899999999999999999999876433332 2222211  1222222   46789999975

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.25  E-value=2.1e-07  Score=83.76  Aligned_cols=75  Identities=8%  Similarity=0.088  Sum_probs=65.6

Q ss_pred             HHHHHHHh--CCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCCCC
Q 027703          142 GKSLAEEE--GLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSKGS  211 (220)
Q Consensus       142 ~~~~~~~~--~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~g~  211 (220)
                      |.++..++  .+.++|  ++++|+..++.+++.|.++...+.++++++|+++++. .||+|++|      ++|+++.+|+
T Consensus       516 A~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~  594 (972)
T 2r6f_A          516 ATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGT  594 (972)
T ss_dssp             HHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEEC
T ss_pred             HHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecC
Confidence            55666553  678898  9999999999999999988777999999999999876 69999999      8999999999


Q ss_pred             Cccccc
Q 027703          212 MMDFSC  217 (220)
Q Consensus       212 ~~~~~~  217 (220)
                      ++++..
T Consensus       595 ~~e~~~  600 (972)
T 2r6f_A          595 PEEVMN  600 (972)
T ss_dssp             TTTTTT
T ss_pred             HHHHHh
Confidence            988753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.23  E-value=4.5e-07  Score=70.69  Aligned_cols=57  Identities=19%  Similarity=0.334  Sum_probs=34.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER   75 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~   75 (220)
                      ++++++|.+|+|||||+|+|.+........ +.+.......+....   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCC-CCCCccceEEEEeCC---CEEEEECCCccc
Confidence            689999999999999999999886543322 111111111222222   467899999764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.20  E-value=6.1e-07  Score=65.71  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      -.++++||+|+|||||++.+.+..
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999999998863

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.18  E-value=1.6e-06  Score=74.71  Aligned_cols=64  Identities=16%  Similarity=0.164  Sum_probs=39.5

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEE----e-CCeEEEEEEEecCCcch
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVD----I-DGKEVKAQIWDTAGQER   75 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~----~-~~~~~~~~~~d~~g~~~   75 (220)
                      ..+..+|+|+|++|+|||||+|+|++.........+. .+...+.+.    + ......+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt-~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTV-QSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSS-SCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCC-CCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            4567899999999999999999999986321111111 111111111    1 12234677899999753

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.15  E-value=1.1e-06  Score=64.49  Aligned_cols=50  Identities=2%  Similarity=-0.050  Sum_probs=35.1

Q ss_pred             HHHHhCCeEEE----eccCCCCCHHHHHHHHHHHHHHHhhhhhcC---cchhhhccccce
Q 027703          145 LAEEEGLFFME----TSALDSTNVEAAFEVVIREIYSNISRKVLN---SDAYKAELSVNR  197 (220)
Q Consensus       145 ~~~~~~~~~~~----~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~---h~~~~~~~~a~~  197 (220)
                      ++.++++.++|    ++++|+.....+.+.+.+   .+.++++++   |+..++..++++
T Consensus        96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r  152 (178)
T 1ye8_A           96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL  152 (178)
T ss_dssp             HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred             cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHHHhc
Confidence            67778888888    577776655555554433   245477777   588999999998

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.13  E-value=1.8e-07  Score=84.20  Aligned_cols=74  Identities=12%  Similarity=0.244  Sum_probs=65.2

Q ss_pred             HHHHHHHh---CCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCCC
Q 027703          142 GKSLAEEE---GLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSKG  210 (220)
Q Consensus       142 ~~~~~~~~---~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~g  210 (220)
                      |++++.++   ++.++|  |+++|...+.++++.|.++..++.+++++||+++++. .||++++|      ++|+++..|
T Consensus       857 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~p~gG~~~G~Iv~~g  935 (972)
T 2r6f_A          857 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVG  935 (972)
T ss_dssp             HHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEECSSSTTSCCSEEEEE
T ss_pred             HHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEEcCCCCCCCCEEEEec
Confidence            55777654   788999  9999999999999999988777899999999999975 79999999      799999999


Q ss_pred             CCcccc
Q 027703          211 SMMDFS  216 (220)
Q Consensus       211 ~~~~~~  216 (220)
                      +++++.
T Consensus       936 ~~~el~  941 (972)
T 2r6f_A          936 TPEEVA  941 (972)
T ss_dssp             SHHHHH
T ss_pred             CHHHHH
Confidence            988764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.10  E-value=5.1e-07  Score=80.75  Aligned_cols=75  Identities=15%  Similarity=0.127  Sum_probs=65.1

Q ss_pred             HHHHHHHh--CCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCCCC
Q 027703          142 GKSLAEEE--GLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSKGS  211 (220)
Q Consensus       142 ~~~~~~~~--~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~g~  211 (220)
                      |.++..++  .+.++|  |+++|+..++.+++.+.++...+.++++++|+++.+. .||+|++|      ++|+++..|+
T Consensus       391 A~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~  469 (842)
T 2vf7_A          391 ATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGP  469 (842)
T ss_dssp             HHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEEC
T ss_pred             HHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecC
Confidence            55556666  378888  9999999999999999888777999999999999765 69999999      8999999999


Q ss_pred             Cccccc
Q 027703          212 MMDFSC  217 (220)
Q Consensus       212 ~~~~~~  217 (220)
                      ++++.-
T Consensus       470 ~~~~~~  475 (842)
T 2vf7_A          470 PEGLKH  475 (842)
T ss_dssp             GGGGGG
T ss_pred             HHHHHh
Confidence            988754

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.09  E-value=9.5e-07  Score=70.29  Aligned_cols=25  Identities=20%  Similarity=0.414  Sum_probs=22.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEF   39 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~   39 (220)
                      --++++|++||||||+++.|.+...
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4689999999999999999998843

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.07  E-value=1.2e-05  Score=65.71  Aligned_cols=97  Identities=22%  Similarity=0.189  Sum_probs=67.9

Q ss_pred             CcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHH----HHH
Q 027703           72 GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKS----LAE  147 (220)
Q Consensus        72 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~----~~~  147 (220)
                      .++.|......++..++.+++|+|+++..+     .|...+..... ..|+++++||.|+... ....+....    ...
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence            356778888888888999999999998663     23333333322 5789999999998642 233333333    344


Q ss_pred             HhCC---eEEEeccCCCCCHHHHHHHHHHHH
Q 027703          148 EEGL---FFMETSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       148 ~~~~---~~~~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                      ..+.   .++.+||+++.|++++++.+.++.
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            4555   688899999999999999987654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.06  E-value=1.1e-05  Score=64.71  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=22.8

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCc
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      ..--++++|+|||||||+++.|.+..
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999999873

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.05  E-value=2.5e-06  Score=61.24  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=23.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSK   44 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~   44 (220)
                      -++++||+|||||||++.|.+.. +..+.
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l-~~~G~   62 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI-GHQGN   62 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence            58999999999999999999987 54443

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=98.04  E-value=7.3e-07  Score=63.37  Aligned_cols=59  Identities=17%  Similarity=0.185  Sum_probs=50.9

Q ss_pred             HHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeee
Q 027703          143 KSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVK  202 (220)
Q Consensus       143 ~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~  202 (220)
                      ++++.++++.++|  ++++|..+...+.+.+.++..++.+++++||+. .+..+||++++|+
T Consensus        76 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~d~ii~l~  136 (148)
T 1f2t_B           76 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAADHVIRIS  136 (148)
T ss_dssp             HHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGCSEEEEEE
T ss_pred             HHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhCCEEEEEE
Confidence            3455678999999  999999999999998887766678999999999 5678999999994

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.01  E-value=0.00012  Score=60.91  Aligned_cols=84  Identities=15%  Similarity=0.004  Sum_probs=47.7

Q ss_pred             EEEEEEecCCcchhhhh----hH--HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC
Q 027703           63 VKAQIWDTAGQERFRAV----TS--AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD  136 (220)
Q Consensus        63 ~~~~~~d~~g~~~~~~~----~~--~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~  136 (220)
                      +.+.+.||+|.......    ..  .....++.+++|.|+...+.....   ...+...   -.+..++.||.|..    
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~----  252 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGS----  252 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSC----
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCc----
Confidence            56778999996432111    11  122357889999998764432222   2222221   23446789999953    


Q ss_pred             CCHHHHHHHHHHhCCeEEEe
Q 027703          137 VSTEEGKSLAEEEGLFFMET  156 (220)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~  156 (220)
                      .....+.+.....++++..+
T Consensus       253 ~~gG~~ls~~~~~g~PI~fi  272 (443)
T 3dm5_A          253 AKGGGALSAVAATGAPIKFI  272 (443)
T ss_dssp             SSHHHHHHHHHTTCCCEEEE
T ss_pred             ccccHHHHHHHHHCCCEEEE
Confidence            23445556666677776543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.95  E-value=4.2e-06  Score=62.31  Aligned_cols=23  Identities=39%  Similarity=0.618  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      .++|+||||||||||++.|.+..
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998864

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.95  E-value=2.4e-05  Score=61.51  Aligned_cols=99  Identities=13%  Similarity=0.083  Sum_probs=67.6

Q ss_pred             ecCCcc-hhhhhhHHhhcCCcEEEEEEeCCCcccHHH--HHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHH
Q 027703           69 DTAGQE-RFRAVTSAYYRGAVGALVVYDITRRSSFDS--VKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSL  145 (220)
Q Consensus        69 d~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~  145 (220)
                      ..||+. .........+..+|+++.|+|+.++.+...  +.+++        ...|.++++||+|+....  ..+....+
T Consensus         5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~~~   74 (282)
T 1puj_A            5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWKEH   74 (282)
T ss_dssp             ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHHHH
Confidence            356654 344455667889999999999998876642  33332        357899999999986421  11222333


Q ss_pred             HHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          146 AEEEGLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       146 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      ..+.+++++.+|+.++.++.++++.+.+.+.+
T Consensus        75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           75 FENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            44456788999999999999999988887754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.95  E-value=6.4e-06  Score=66.81  Aligned_cols=49  Identities=12%  Similarity=0.001  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703          164 VEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM  212 (220)
Q Consensus       164 v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~  212 (220)
                      +.+++..|.++..+ +.++++++|.............+...|+++.++..
T Consensus       261 ~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~  310 (349)
T 1pzn_A          261 LAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT  310 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCS
T ss_pred             HHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCc
Confidence            45666666766665 78899999987765544445566777888777653

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.90  E-value=5.8e-06  Score=61.51  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      -++++||||||||||++.|.+..
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            48999999999999999999873

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.89  E-value=6.1e-06  Score=62.51  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=21.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEF   39 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~   39 (220)
                      -++|+||||||||||++.|.+...
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhccCC
Confidence            589999999999999999999743

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.89  E-value=3.3e-06  Score=76.34  Aligned_cols=61  Identities=5%  Similarity=-0.096  Sum_probs=44.4

Q ss_pred             HHhCCeEEE--eccCCCCCHHHHHHHHHHHH-H-HHhhhhhcCcchhhhccccceeee-eecCCCCC
Q 027703          147 EEEGLFFME--TSALDSTNVEAAFEVVIREI-Y-SNISRKVLNSDAYKAELSVNRVTL-VKDGANSS  208 (220)
Q Consensus       147 ~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~-~-~~~~~~~~~h~~~~~~~~a~~~~~-~~~G~~~~  208 (220)
                      .++.+.++|  ++++|+.....+...+.+.+ . .+.+++++||+++.+ .++++.-- +.++++..
T Consensus       751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~~~~v~n~~~~~  816 (918)
T 3thx_B          751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNYSHQVGNYHMGF  816 (918)
T ss_dssp             CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHTTTTEEEEEEEE
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhcccceEEEEEEE
Confidence            346677888  99999988888886666665 3 378999999998765 56777643 56666543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.88  E-value=6.5e-06  Score=62.27  Aligned_cols=46  Identities=11%  Similarity=0.000  Sum_probs=32.4

Q ss_pred             eccCCCCCHHHHHHHHHHHHHHH-------hhhhhcCcchhhhccccceeeee
Q 027703          156 TSALDSTNVEAAFEVVIREIYSN-------ISRKVLNSDAYKAELSVNRVTLV  201 (220)
Q Consensus       156 ~Sa~~~~~v~~l~~~l~~~~~~~-------~~~~~~~h~~~~~~~~a~~~~~~  201 (220)
                      +++++......+.+.+.+...+.       ...++++|+++++...+++++.-
T Consensus       155 ~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~~  207 (218)
T 1z6g_A          155 LLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLLN  207 (218)
T ss_dssp             HHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHHH
Confidence            78889888888888877665431       33466777777777777776653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.87  E-value=7.2e-06  Score=60.03  Aligned_cols=23  Identities=22%  Similarity=0.537  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      -++|+||+|||||||+++|.+..
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998863

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.82  E-value=1e-05  Score=60.61  Aligned_cols=27  Identities=26%  Similarity=0.191  Sum_probs=23.7

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCc
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      .....++|+|+||||||||++.|.+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999998874

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.80  E-value=0.00013  Score=60.54  Aligned_cols=85  Identities=13%  Similarity=-0.001  Sum_probs=49.1

Q ss_pred             EEEEEEecCCcch--hh----hhhHH--hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703           63 VKAQIWDTAGQER--FR----AVTSA--YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI  134 (220)
Q Consensus        63 ~~~~~~d~~g~~~--~~----~~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~  134 (220)
                      ..+.+.||+|...  ..    .....  ....++.+++|.|+...+.....   ...+...   -.+..++.||.|..  
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~--  251 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGT--  251 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGC--
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEeccccc--
Confidence            4567899999643  11    11111  11246888999998764332222   2222222   23467889999953  


Q ss_pred             CCCCHHHHHHHHHHhCCeEEEec
Q 027703          135 RDVSTEEGKSLAEEEGLFFMETS  157 (220)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~S  157 (220)
                        .....+.+.....+.++..++
T Consensus       252 --a~~G~als~~~~~g~Pi~fig  272 (433)
T 3kl4_A          252 --AKGGGALSAVVATGATIKFIG  272 (433)
T ss_dssp             --SCHHHHHHHHHHHTCEEEEEE
T ss_pred             --ccchHHHHHHHHHCCCEEEEE
Confidence              245566677777788876544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.80  E-value=6.7e-06  Score=65.38  Aligned_cols=27  Identities=33%  Similarity=0.363  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSN   42 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~   42 (220)
                      .++++|+||||||||+|.|.+...+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~~~~~  201 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPELGLRT  201 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC------
T ss_pred             EEEEECCCCCCHHHHHHHhcccccccc
Confidence            689999999999999999998754443

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.77  E-value=1.2e-05  Score=59.42  Aligned_cols=62  Identities=6%  Similarity=-0.023  Sum_probs=38.7

Q ss_pred             HHHhCCeEEEe-ccCCCCCHHHHHHHHHHHHHHHhhhh----hcCcchhhhccccceeeeeecCCCCCCC
Q 027703          146 AEEEGLFFMET-SALDSTNVEAAFEVVIREIYSNISRK----VLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       146 ~~~~~~~~~~~-Sa~~~~~v~~l~~~l~~~~~~~~~~~----~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      ..++++.++|. ...+... ....+.+.+.+....+++    .++|+..  ..+.|++..+.+|+++.-.
T Consensus       103 ~~~~dvlilDE~g~~~~~~-~~~~~~l~~~l~~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~  169 (189)
T 2i3b_A          103 GPGQRVCVIDEIGKMELFS-QLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT  169 (189)
T ss_dssp             SSCCCCEEECCCSTTTTTC-SHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred             ccCCCEEEEeCCCcccccc-HHHHHHHHHHHhCCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence            45677888884 2333222 246666666666554544    3448775  4678888888888877643

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.76  E-value=1.3e-05  Score=58.97  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=21.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -.++++|+||||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35999999999999999999986

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.76  E-value=7e-05  Score=59.29  Aligned_cols=84  Identities=15%  Similarity=0.024  Sum_probs=48.9

Q ss_pred             EEEEEEecCCcch--hhhhhH------HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCc-EEEEEecCCCCC
Q 027703           63 VKAQIWDTAGQER--FRAVTS------AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDS  133 (220)
Q Consensus        63 ~~~~~~d~~g~~~--~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~  133 (220)
                      +.+.+.||+|...  ......      .....++.+++|.|.....   ........+..    ..+ ..++.||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            4577899999765  211111      1234688899999986432   22222222222    244 567899999532


Q ss_pred             CCCCCHHHHHHHHHHhCCeEEEec
Q 027703          134 IRDVSTEEGKSLAEEEGLFFMETS  157 (220)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~S  157 (220)
                          ....+.++....+.++..++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~  273 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG  273 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE
T ss_pred             ----chHHHHHHHHHHCcCEEEEe
Confidence                34555667777777776643

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.73  E-value=0.00025  Score=59.03  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|+++|++||||||++..|...
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~  122 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARY  122 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999773

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.72  E-value=1.7e-05  Score=59.29  Aligned_cols=23  Identities=39%  Similarity=0.600  Sum_probs=21.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..++|+|++|||||||++.|.+.
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999986

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.71  E-value=1.9e-05  Score=62.68  Aligned_cols=28  Identities=32%  Similarity=0.215  Sum_probs=23.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNS   43 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~   43 (220)
                      .++++|+||||||||+|+|.+...+..+
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~~~~G  198 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLKLRVS  198 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC--
T ss_pred             eEEEECCCCCcHHHHHHHhccccccccc
Confidence            5799999999999999999998655443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.69  E-value=2.9e-05  Score=62.92  Aligned_cols=29  Identities=28%  Similarity=0.307  Sum_probs=24.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcC-CCCCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEF-DSNSK   44 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~-~~~~~   44 (220)
                      .++++|+||||||||+|.|.+... +..+.
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~~~~~G~  246 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQNEILTND  246 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred             EEEEECCCCccHHHHHHHHhccccccccCC
Confidence            589999999999999999999865 54433

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.67  E-value=1.5e-05  Score=64.90  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=22.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFD   40 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~   40 (220)
                      -.++|+|++|||||||++.|.+...+
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            36999999999999999999998543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.65  E-value=2.7e-05  Score=58.35  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      -++++||+|||||||+++|.+..
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            58999999999999999999874

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.62  E-value=3.1e-05  Score=57.50  Aligned_cols=24  Identities=33%  Similarity=0.546  Sum_probs=21.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      --++|+||+|||||||+++|.+..
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECcCCCCHHHHHHHHHhhC
Confidence            358999999999999999998763

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.61  E-value=1e-05  Score=58.81  Aligned_cols=39  Identities=21%  Similarity=0.316  Sum_probs=26.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE   62 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~   62 (220)
                      .++|+|++|||||||++.|.+...+...        ..+.+.+++..
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~--------~~G~I~~dg~~   42 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILRERGL--------RVAVVKRHAHG   42 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHHTTC--------CEEEEEC----
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCC--------ceEEEEEcCcc
Confidence            5899999999999999999987422111        15667666643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.61  E-value=4.1e-05  Score=60.77  Aligned_cols=28  Identities=39%  Similarity=0.502  Sum_probs=23.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSK   44 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~   44 (220)
                      .++++|+||||||||+|+|. ...+..+.
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~  194 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GEELRTQE  194 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SCCCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHH-HhhCcccc
Confidence            57999999999999999999 76555544

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.61  E-value=2.8e-05  Score=63.42  Aligned_cols=57  Identities=4%  Similarity=-0.008  Sum_probs=41.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          157 SALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ++++......+.+.+.++..+ +.++++++|. ....++++++.++++  ++..++++++.
T Consensus       297 ~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~~  354 (365)
T 1lw7_A          297 SLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISELQ  354 (365)
T ss_dssp             ----CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred             CCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHhh
Confidence            567888888998888777654 7888888854 567788999998876  77777777753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.60  E-value=3.8e-05  Score=55.64  Aligned_cols=23  Identities=39%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..++++|++||||||+.+.|.+.
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            46999999999999999999764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.60  E-value=3.4e-05  Score=59.29  Aligned_cols=25  Identities=24%  Similarity=0.476  Sum_probs=22.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHh---hCcC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFA---RNEF   39 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~---~~~~   39 (220)
                      ..++|+|+||||||||++.|.   +...
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~   55 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNFGLQH   55 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence            479999999999999999999   7643

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.60  E-value=1.8e-05  Score=60.14  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=15.2

Q ss_pred             EEEEECCCCCcHHHHHHHHh-hCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFA-RNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~-~~~   38 (220)
                      -++++||+|||||||++.|. +..
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC---
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            58999999999999999999 763

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.59  E-value=5.2e-06  Score=70.04  Aligned_cols=100  Identities=15%  Similarity=0.115  Sum_probs=55.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc--hhhhhh--------HHh
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE--RFRAVT--------SAY   83 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~--~~~~~~--------~~~   83 (220)
                      .+.|+++|.+||||||+.++|........ ..+..+..........+......+||..|..  .....+        ..+
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~  117 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF  117 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999976532110 1111100000000001111233467887763  222222        445


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhh
Q 027703           84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTH  115 (220)
Q Consensus        84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~  115 (220)
                      +....+.++|+|.++. ++.....|+..+...
T Consensus       118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            5556777889999886 566656666655443

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.59  E-value=4.8e-05  Score=60.69  Aligned_cols=29  Identities=28%  Similarity=0.185  Sum_probs=24.6

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcC
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEF   39 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~   39 (220)
                      .....-++|+|+||||||||++.|.+...
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            34456799999999999999999998753

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.59  E-value=3.7e-05  Score=57.13  Aligned_cols=24  Identities=38%  Similarity=0.520  Sum_probs=21.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      ..++++|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999999875

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.59  E-value=0.00014  Score=60.69  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=23.4

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..+..=|+|+|++++|||||+|+|++.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            445677999999999999999999863

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.58  E-value=3.7e-05  Score=57.12  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      --++|+|++||||||+++.|.+.
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.57  E-value=3.5e-05  Score=64.83  Aligned_cols=28  Identities=21%  Similarity=0.303  Sum_probs=23.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNS   43 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~   43 (220)
                      -++|+||||||||||++.|.+...+..+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G   58 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVTALIPDLT   58 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred             eEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            4799999999999999999987555433

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.57  E-value=4.1e-05  Score=55.27  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .|+++|++||||||+.+.|.+.
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999999875

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.56  E-value=4.2e-05  Score=58.73  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .-|+|+|++|||||||++.|.+.
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            56999999999999999999885

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.54  E-value=0.00015  Score=59.84  Aligned_cols=41  Identities=15%  Similarity=0.016  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHH-HhhhhhcCcch-------------------hhhccccceeeeeecCC
Q 027703          165 EAAFEVVIREIYS-NISRKVLNSDA-------------------YKAELSVNRVTLVKDGA  205 (220)
Q Consensus       165 ~~l~~~l~~~~~~-~~~~~~~~h~~-------------------~~~~~~a~~~~~~~~G~  205 (220)
                      .+++..|.++..+ +.++++++|..                   .....++|.+++|+.|+
T Consensus       304 ~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          304 AKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence            6677778877766 78999999982                   22366789999999874

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.44  E-value=5.7e-05  Score=64.42  Aligned_cols=61  Identities=13%  Similarity=-0.015  Sum_probs=55.0

Q ss_pred             HHHHHHHh--CCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecC
Q 027703          142 GKSLAEEE--GLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDG  204 (220)
Q Consensus       142 ~~~~~~~~--~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G  204 (220)
                      +++++.++  ++.++|  ++++|+.....+.+.|.++.. +.+++++||++..+. +||++++|++|
T Consensus       409 a~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~~~~~  473 (517)
T 4ad8_A          409 AVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHYKVEKQ  473 (517)
T ss_dssp             HHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEEEEECC
T ss_pred             HHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEEEecc
Confidence            77888899  999999  999999999999999988765 899999999999876 69999999665

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.44  E-value=7.3e-05  Score=55.51  Aligned_cols=25  Identities=28%  Similarity=0.175  Sum_probs=21.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCc
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      ..-|+++|++||||||+.+.|.+..
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3569999999999999999998763

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.42  E-value=8.7e-05  Score=59.05  Aligned_cols=25  Identities=28%  Similarity=0.279  Sum_probs=22.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCc
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      ..-++|+|++|||||||++.|.+..
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999999863

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.41  E-value=8.6e-05  Score=54.65  Aligned_cols=21  Identities=43%  Similarity=0.640  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999765

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.41  E-value=7.5e-05  Score=54.40  Aligned_cols=25  Identities=20%  Similarity=0.127  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFD   40 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~   40 (220)
                      -.+|+|+||+|||||+++|.....+
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            3689999999999999999775443

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.40  E-value=7.8e-05  Score=55.35  Aligned_cols=21  Identities=33%  Similarity=0.520  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 027703           16 KIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~   36 (220)
                      +|+|+|++||||||+.+.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            699999999999999999988

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.39  E-value=8.9e-05  Score=63.07  Aligned_cols=27  Identities=19%  Similarity=0.283  Sum_probs=23.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSN   42 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~   42 (220)
                      .++|+|++|||||||+++|++...+..
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i~~~~  288 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFIPPDA  288 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCCCC
Confidence            489999999999999999999864443

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.37  E-value=0.00011  Score=55.50  Aligned_cols=23  Identities=30%  Similarity=0.335  Sum_probs=20.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.37  E-value=7.1e-05  Score=53.03  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      .++++|++|+|||||++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999999864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.36  E-value=0.00012  Score=54.43  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.|+++|++||||||+.+.|.+.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHC
Confidence            46999999999999999999873

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.36  E-value=2.3e-05  Score=63.69  Aligned_cols=68  Identities=9%  Similarity=0.015  Sum_probs=57.8

Q ss_pred             HHHHH---------HHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703          142 GKSLA---------EEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG  210 (220)
Q Consensus       142 ~~~~~---------~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g  210 (220)
                      +++++         .++++.++|  +|.+|+.....+++.+.++.   .+++++|| ++.   .++++++|++|+++..|
T Consensus       277 A~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~~---~~~~i~~l~~G~i~~~g  349 (359)
T 2o5v_A          277 ALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LAP---GAALTLRAQAGRFTPVA  349 (359)
T ss_dssp             HHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CCT---TCSEEEEEETTEEEECC
T ss_pred             HHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-ccc---cCCEEEEEECCEEEecC
Confidence            67777         567888999  99999999999999887653   67888999 444   89999999999999999


Q ss_pred             CCcccc
Q 027703          211 SMMDFS  216 (220)
Q Consensus       211 ~~~~~~  216 (220)
                      +++++.
T Consensus       350 ~~~~~~  355 (359)
T 2o5v_A          350 DEEMQA  355 (359)
T ss_dssp             CTTTSC
T ss_pred             CHHHHh
Confidence            998874

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.34  E-value=9.4e-05  Score=61.31  Aligned_cols=26  Identities=27%  Similarity=0.224  Sum_probs=22.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDS   41 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~   41 (220)
                      -++|+||+|||||||++.|++...+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l~~~  194 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQELNSS  194 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred             eEEEECCCCCCHHHHHHHHHhhcCCC
Confidence            48999999999999999999875443

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.34  E-value=0.00011  Score=54.66  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      -|+++|++||||||+.+.|....
T Consensus        14 ~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           14 PLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            48999999999999999997653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.34  E-value=0.00011  Score=55.74  Aligned_cols=26  Identities=23%  Similarity=0.515  Sum_probs=22.8

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ....-|+|.|++||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34567999999999999999999886

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.33  E-value=8.7e-05  Score=57.26  Aligned_cols=25  Identities=28%  Similarity=0.287  Sum_probs=21.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHh---hCcC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFA---RNEF   39 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~---~~~~   39 (220)
                      ..|+|+|++||||||+++.|.   +..+
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~   55 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESLNWRL   55 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence            479999999999999999998   6533

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.33  E-value=0.00012  Score=58.46  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      --++|+|++|||||||++.|.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            457899999999999999999874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.32  E-value=0.00011  Score=57.39  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=20.2

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      ++++||||+|||||+++|.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999986

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.32  E-value=0.00011  Score=60.12  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      .++|+|++|||||||++.|.+..
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            59999999999999999999874

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.28  E-value=2e-05  Score=59.96  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=23.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCC
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNS   43 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~   43 (220)
                      ++|+||||||||||+++|.+...+..+
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~~~~G   56 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALIPDLT   56 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred             EEEECCCCCCHHHHHHHHhcccccCCC
Confidence            478999999999999999998766544

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.28  E-value=0.00014  Score=58.17  Aligned_cols=25  Identities=28%  Similarity=0.234  Sum_probs=21.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCc
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      .+=++|+|++|||||||++.|.+..
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3569999999999999999997763

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.28  E-value=0.00015  Score=52.69  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .-++++|++|||||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            35899999999999999999875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.27  E-value=0.00014  Score=61.31  Aligned_cols=24  Identities=33%  Similarity=0.664  Sum_probs=21.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      --++|+|+||||||||++.|.+..
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHHHh
Confidence            468999999999999999998873

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.26  E-value=0.00017  Score=51.07  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 027703           17 IVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~   36 (220)
                      .+|+||||+||||++.+|..
T Consensus        26 ~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            58999999999999999863

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.25  E-value=0.00019  Score=53.36  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ...|+|+|++||||||+.+.|.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999999886

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.24  E-value=0.00013  Score=54.16  Aligned_cols=23  Identities=35%  Similarity=0.369  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|+|.|++||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.24  E-value=0.00017  Score=51.77  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.24  E-value=0.00018  Score=53.41  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..-++|+|++||||||+++.|.+.
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999874

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.21  E-value=0.00018  Score=55.30  Aligned_cols=21  Identities=33%  Similarity=0.621  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      ++++||||+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999886

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.21  E-value=0.00021  Score=52.92  Aligned_cols=22  Identities=41%  Similarity=0.591  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .|+++|++||||||+.+.|...
T Consensus        27 ~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           27 RIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6999999999999999999764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.20  E-value=0.00019  Score=51.47  Aligned_cols=19  Identities=26%  Similarity=0.412  Sum_probs=18.1

Q ss_pred             EEEEECCCCCcHHHHHHHH
Q 027703           16 KIVLIGDSAVGKSNLLSRF   34 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l   34 (220)
                      -|++.|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999999

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.19  E-value=0.0002  Score=53.55  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ++|+|.|++||||||+.+.|...
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999553

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.17  E-value=0.00022  Score=53.41  Aligned_cols=23  Identities=26%  Similarity=0.445  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ++|+|.|++||||||+.+.|...
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999653

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.17  E-value=0.00021  Score=57.49  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .++++||||+|||||++.|.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999886

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.16  E-value=5.6e-05  Score=61.00  Aligned_cols=57  Identities=16%  Similarity=0.145  Sum_probs=49.1

Q ss_pred             HHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeec
Q 027703          146 AEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKD  203 (220)
Q Consensus       146 ~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~  203 (220)
                      +.+|++.++|  ++++|+.....+++++.++..++.+++++||+.+ +...||++++|+.
T Consensus       270 ~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d~~~~l~~  328 (339)
T 3qkt_A          270 AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADHVIRISL  328 (339)
T ss_dssp             TTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSEEEEEEE
T ss_pred             cCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCCEEEEEEe
Confidence            3468889999  9999999999999999887766779999999965 5778999999863

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.15  E-value=0.00024  Score=52.46  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .|+|.|++||||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999999774

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.12  E-value=0.00031  Score=52.30  Aligned_cols=23  Identities=26%  Similarity=0.138  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|++.|++||||||+.+.|...
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999999753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.12  E-value=0.00028  Score=51.02  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      .-|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3589999999999999999987

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.11  E-value=0.00026  Score=55.28  Aligned_cols=21  Identities=33%  Similarity=0.621  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      ++++||+|+|||||++.|.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999886

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.08  E-value=0.0004  Score=50.57  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhh
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      ...|++.|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999975

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.07  E-value=0.00039  Score=54.77  Aligned_cols=25  Identities=20%  Similarity=0.153  Sum_probs=22.1

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ....|+|.|++|||||||.+.|.+.
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999776

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.05  E-value=0.00035  Score=51.54  Aligned_cols=24  Identities=21%  Similarity=0.219  Sum_probs=21.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ...|+|.|++||||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            367999999999999999999875

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.04  E-value=0.00038  Score=51.49  Aligned_cols=24  Identities=21%  Similarity=0.504  Sum_probs=21.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.|++.|++||||||+.+.|...
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            367999999999999999999753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.02  E-value=0.00038  Score=52.07  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.|+++|||||||+|..++|...
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999765

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.02  E-value=0.00042  Score=50.61  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.01  E-value=0.0004  Score=50.17  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -|.+.|++||||||+.+.|...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999999874

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.00  E-value=0.00041  Score=50.59  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|+|.|++||||||+.+.|...
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999663

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.99  E-value=0.00037  Score=52.17  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.98  E-value=0.00041  Score=50.14  Aligned_cols=22  Identities=41%  Similarity=0.579  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +|+|+|++||||||+.+.|...
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5999999999999999999764

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.97  E-value=0.00063  Score=49.64  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ...-|++.|++||||||+.+.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999765

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.95  E-value=0.00051  Score=49.65  Aligned_cols=22  Identities=18%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -++++|++|||||||+.+|...
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999999764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.94  E-value=0.00052  Score=49.08  Aligned_cols=22  Identities=41%  Similarity=0.502  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999976

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.94  E-value=0.0006  Score=49.44  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ...|++.|++||||||+.+.|...
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999874

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.92  E-value=0.00061  Score=52.86  Aligned_cols=85  Identities=11%  Similarity=0.056  Sum_probs=59.3

Q ss_pred             hhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEecc
Q 027703           79 VTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSA  158 (220)
Q Consensus        79 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (220)
                      ........+|.++.|+|+.++.+.....  +. +   .  ..|.+++.||+|+....  ..+....+....+.++ .+|+
T Consensus        14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~~--~~~~~~~~~~~~g~~v-~iSa   82 (262)
T 3cnl_A           14 QIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADEK--TTKKWVEFFKKQGKRV-ITTH   82 (262)
T ss_dssp             HHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCHH--HHHHHHHHHHHTTCCE-EECC
T ss_pred             HHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCHH--HHHHHHHHHHHcCCeE-EEEC
Confidence            4556778999999999998876654311  11 1   1  57889999999986421  1122233444556777 9999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027703          159 LDSTNVEAAFEVVIRE  174 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~  174 (220)
                      .++.|+.++++.+.+.
T Consensus        83 ~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           83 KGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             TTSCHHHHHHHHCCCT
T ss_pred             CCCcCHHHHHHHHHHh
Confidence            9999999999877654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.91  E-value=0.00054  Score=51.04  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 027703           17 IVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~   36 (220)
                      .+|+|+||+||||++.+|.-
T Consensus        26 ~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            57899999999999999843

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.90  E-value=0.00049  Score=56.20  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -++++||+|+|||||++.|.+.
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999874

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.90  E-value=0.0002  Score=53.37  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -|+|.|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4899999999999999999764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.90  E-value=0.00067  Score=50.31  Aligned_cols=23  Identities=22%  Similarity=0.166  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|++.|++||||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999999764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.88  E-value=0.00052  Score=50.20  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .-|++.|++||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.88  E-value=0.00076  Score=49.85  Aligned_cols=23  Identities=17%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|++.|++||||||+.+.|...
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999753

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.87  E-value=0.00067  Score=49.34  Aligned_cols=22  Identities=36%  Similarity=0.469  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .|+++|++||||||+.+.|...
T Consensus         7 ~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            7 NIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999654

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.87  E-value=0.00071  Score=51.79  Aligned_cols=24  Identities=13%  Similarity=0.242  Sum_probs=21.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .++|++.|++||||||+.++|...
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999753

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.86  E-value=0.0006  Score=52.56  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -++|+|++|||||||.+.|...
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            3789999999999999999653

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.84  E-value=0.00065  Score=51.23  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.|++.|++||||||+.+.|...
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999653

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.83  E-value=0.00068  Score=49.49  Aligned_cols=23  Identities=22%  Similarity=0.484  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|+++|++||||||+.+.|...
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999999764

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.83  E-value=0.00063  Score=55.21  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 027703           16 KIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~   36 (220)
                      -.+++|+||+||||++++|..
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            478999999999999999976

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.82  E-value=0.00082  Score=50.01  Aligned_cols=22  Identities=32%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      ..|++.|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999975

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.82  E-value=0.00061  Score=52.47  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      -.|+++|++||||||+.+.|.+
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999976

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.81  E-value=0.00069  Score=52.10  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .++++|++|+|||||++++.+.
T Consensus        47 ~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            4899999999999999999875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.81  E-value=0.00073  Score=50.73  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.|++.|++||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999664

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.81  E-value=0.00072  Score=49.01  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|++.|++||||||+.+.|...
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHH
Confidence            35899999999999999999743

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.80  E-value=0.00091  Score=48.85  Aligned_cols=22  Identities=18%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.79  E-value=0.001  Score=50.43  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=22.2

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ...-|++.|++||||||++++|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4467999999999999999999876

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.79  E-value=0.00064  Score=60.51  Aligned_cols=61  Identities=16%  Similarity=0.128  Sum_probs=38.5

Q ss_pred             HHHhCCeEEE-----eccCCCCCH-HHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703          146 AEEEGLFFME-----TSALDSTNV-EAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM  212 (220)
Q Consensus       146 ~~~~~~~~~~-----~Sa~~~~~v-~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~  212 (220)
                      +.++.+.++|     ||++|+.+. ..+++.+.+   .+.+++++||+.+.+. ++  ...+.++++..+...
T Consensus       653 a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~-~~--~~~v~n~~~~~~~~~  719 (765)
T 1ewq_A          653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTA-LG--LPRLKNLHVAAREEA  719 (765)
T ss_dssp             CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHT-CC--CTTEEEEEEEEECCS
T ss_pred             ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHH-hh--hhcceEEEEEEEEcC
Confidence            3345556666     677777665 356666554   5788999999988865 44  344555555544433

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.79  E-value=0.00064  Score=53.06  Aligned_cols=52  Identities=13%  Similarity=0.029  Sum_probs=35.8

Q ss_pred             HHHHHHHHhCCeEEE--ec--cCCCCCH---HHHHHHHHHHHHH-HhhhhhcCcchhhhc
Q 027703          141 EGKSLAEEEGLFFME--TS--ALDSTNV---EAAFEVVIREIYS-NISRKVLNSDAYKAE  192 (220)
Q Consensus       141 ~~~~~~~~~~~~~~~--~S--a~~~~~v---~~l~~~l~~~~~~-~~~~~~~~h~~~~~~  192 (220)
                      .+++++.++++.++|  ++  .++....   .+++..|.++..+ +.++++++|+.....
T Consensus       126 ~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~  185 (279)
T 1nlf_A          126 GLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA  185 (279)
T ss_dssp             HHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred             HHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence            456667778889999  55  5666554   7888888888754 889999999987653

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.78  E-value=0.0008  Score=49.67  Aligned_cols=23  Identities=22%  Similarity=0.193  Sum_probs=21.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|++.|++||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            56999999999999999999875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.78  E-value=0.0008  Score=49.16  Aligned_cols=21  Identities=19%  Similarity=0.257  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 027703           16 KIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~   36 (220)
                      .|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999976

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.77  E-value=0.00096  Score=49.95  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      +.|+|.|++||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.77  E-value=0.00068  Score=53.31  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .-|++.|++||||||+.+.|...
T Consensus        34 ~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56999999999999999999764

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.77  E-value=0.00074  Score=54.37  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 027703           17 IVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~   36 (220)
                      .+|+||||+||||++.+|..
T Consensus        26 ~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           26 NLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            37999999999999999854

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.77  E-value=0.00071  Score=51.08  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      ..|++.|++||||||+.+.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999974

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.76  E-value=0.023  Score=47.21  Aligned_cols=22  Identities=14%  Similarity=0.321  Sum_probs=19.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHh
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFA   35 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~   35 (220)
                      ...|+++|++|+||||+...|.
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3568889999999999999986

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.76  E-value=0.00081  Score=51.20  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.|+|.|++||||||+.+.|...
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999999743

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.76  E-value=0.00078  Score=51.85  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ...|+++|++||||||+.+.|...
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            367999999999999999999765

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.74  E-value=0.00077  Score=56.07  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=0.0

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 027703           17 IVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~   36 (220)
                      ++|+||||+|||||+++|.+
T Consensus        29 ~~i~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A           29 TSIIGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.73  E-value=0.00093  Score=48.30  Aligned_cols=22  Identities=36%  Similarity=0.670  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.|++|+|||++++.+...
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999765

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.72  E-value=0.00082  Score=50.43  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.|++.|++||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999999654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.71  E-value=0.00079  Score=53.18  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=21.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      -.++++|++||||||++..|.+..
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            368999999999999999998753

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.68  E-value=0.00092  Score=48.96  Aligned_cols=23  Identities=17%  Similarity=0.354  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|++.|++||||||+.+.|...
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.68  E-value=0.00099  Score=50.54  Aligned_cols=23  Identities=30%  Similarity=0.595  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|++.|++||||||+.+.|...
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999999754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.67  E-value=0.00074  Score=53.59  Aligned_cols=88  Identities=16%  Similarity=0.120  Sum_probs=56.5

Q ss_pred             hhHHhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHHhCCeEEE
Q 027703           79 VTSAYYRGAVGALVVYDITRRS-SFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--STEEGKSLAEEEGLFFME  155 (220)
Q Consensus        79 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~~~~~~~~~~~~~~~~~  155 (220)
                      +......++|.+++|+|+.++. +...+.+++....   ...+|.+++.||.|+......  ..++........+..++.
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~  155 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL  155 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence            3345678899999999998654 4555554443322   235677999999998753210  123334444556778888


Q ss_pred             eccCCCCCHHHHHH
Q 027703          156 TSALDSTNVEAAFE  169 (220)
Q Consensus       156 ~Sa~~~~~v~~l~~  169 (220)
                      +|+.++.+++++++
T Consensus       156 ~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          156 TSSKDQDSLADIIP  169 (307)
T ss_dssp             CCHHHHTTCTTTGG
T ss_pred             EecCCCCCHHHHHh
Confidence            88887777665544

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.67  E-value=0.001  Score=49.58  Aligned_cols=24  Identities=38%  Similarity=0.372  Sum_probs=21.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..-|++.|++||||||+.+.|...
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999765

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.66  E-value=0.00094  Score=50.19  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|+|.|++||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999653

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.66  E-value=0.00098  Score=48.92  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|++.|++||||||+.+.|...
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.65  E-value=0.0012  Score=47.42  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .|++.|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999763

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.62  E-value=0.0011  Score=52.56  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=21.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      --++++|++||||||++..|.+..
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHHHH
Confidence            458999999999999999998753

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.62  E-value=0.0012  Score=48.75  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=21.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      -.+.+.|++|+|||+|++.+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999998753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.62  E-value=0.0036  Score=43.66  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.|++|+|||++.+.+...
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCT
T ss_pred             cEEEECCCCccHHHHHHHHHHh
Confidence            4899999999999999999775

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.59  E-value=0.0013  Score=49.89  Aligned_cols=25  Identities=16%  Similarity=0.369  Sum_probs=21.1

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -.++++++|++||||||+.++|...
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~   31 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEK   31 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.58  E-value=0.0014  Score=49.40  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -.+.+.|++|+|||||++.+...
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999765

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.57  E-value=0.0016  Score=47.46  Aligned_cols=23  Identities=17%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..|++.|++||||||+.+.|...
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.57  E-value=0.0014  Score=49.41  Aligned_cols=21  Identities=19%  Similarity=0.480  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |.|+|||||||+|..++|...
T Consensus        32 I~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999765

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.55  E-value=0.0014  Score=47.55  Aligned_cols=22  Identities=41%  Similarity=0.570  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .|+|.|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999999653

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.55  E-value=0.0011  Score=53.45  Aligned_cols=21  Identities=19%  Similarity=0.351  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.+.||+|+||||+++.+.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999883

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.54  E-value=0.0016  Score=50.00  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      +.|+|.|++||||||+.+.|..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999976

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.52  E-value=0.0021  Score=47.45  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=22.3

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -.+.|++.|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            3688999999999999999999764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.50  E-value=0.0018  Score=50.03  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      .-|++.|++||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999999975

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.50  E-value=0.0015  Score=49.60  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhh
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      ...|+|+|++||||||+.+.|..
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999986

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.49  E-value=0.00087  Score=57.48  Aligned_cols=26  Identities=31%  Similarity=0.345  Sum_probs=22.9

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCc
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      ....++++|++|||||||++.|.+..
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhh
Confidence            34679999999999999999998874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.48  E-value=0.0013  Score=47.34  Aligned_cols=22  Identities=32%  Similarity=0.626  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.|++|+|||++++.+...
T Consensus        45 ~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           45 NPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999765

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.47  E-value=0.0011  Score=47.98  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=15.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      ..|++.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999964

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.42  E-value=0.0017  Score=50.90  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -.+.+.||+|+||||+.+++...
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999999875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.41  E-value=0.0018  Score=51.19  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.||+|+|||+|.+++.+.
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCcCHHHHHHHHHHH
Confidence            5899999999999999999875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.40  E-value=0.0019  Score=48.40  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -+.+.|++|+|||||++.+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.37  E-value=0.0021  Score=47.49  Aligned_cols=22  Identities=36%  Similarity=0.442  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .|+|.|++||||||+.+.|...
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999999763

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.36  E-value=0.0019  Score=51.36  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.||+|+|||||++.+...
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999999875

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.36  E-value=0.0022  Score=50.17  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=20.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhh
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      .+.|+|.|++||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999974

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.36  E-value=0.0023  Score=45.71  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .|++.|.+||||||+.+.|...
T Consensus         9 ~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999663

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.35  E-value=0.002  Score=51.75  Aligned_cols=23  Identities=22%  Similarity=0.540  Sum_probs=20.8

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcC
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEF   39 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~   39 (220)
                      +.+.||+|+||||+++.+.+...
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            89999999999999999988643

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.34  E-value=0.015  Score=47.01  Aligned_cols=86  Identities=19%  Similarity=0.155  Sum_probs=54.3

Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC-CHHHHHHHHHHhCCeEEEeccCCC
Q 027703           83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV-STEEGKSLAEEEGLFFMETSALDS  161 (220)
Q Consensus        83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~  161 (220)
                      ...++|.+++|.......+...+.+++......   ..|.+++.||.||...... ..++........+.+++.+|+.++
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~  203 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ  203 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            457788888776654334555555554433322   4566899999998742210 011222333456788899999999


Q ss_pred             CCHHHHHHHH
Q 027703          162 TNVEAAFEVV  171 (220)
Q Consensus       162 ~~v~~l~~~l  171 (220)
                      .+++++...+
T Consensus       204 ~gl~~L~~~~  213 (358)
T 2rcn_A          204 DGLKPLEEAL  213 (358)
T ss_dssp             BTHHHHHHHH
T ss_pred             cCHHHHHHhc
Confidence            9999887653

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.32  E-value=0.0021  Score=50.00  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.||+|+|||+|++++...
T Consensus        53 ~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           53 GILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999875

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.29  E-value=0.0021  Score=48.70  Aligned_cols=55  Identities=7%  Similarity=0.066  Sum_probs=36.2

Q ss_pred             hCCeEEE-eccC---CCCCHHHHHHHHHHHHHH-HhhhhhcCcchhh--------hccccceeeeeec
Q 027703          149 EGLFFME-TSAL---DSTNVEAAFEVVIREIYS-NISRKVLNSDAYK--------AELSVNRVTLVKD  203 (220)
Q Consensus       149 ~~~~~~~-~Sa~---~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~--------~~~~a~~~~~~~~  203 (220)
                      +++.++| .+++   +.....+.+..+.+.+.+ +.++++++|....        +..+||.+++|+.
T Consensus       129 ~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          129 AKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             CCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             CCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            4556677 3333   233456677777777755 7889999998765        3577899999875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.27  E-value=0.0025  Score=47.12  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.+.|++|+|||++++.+...
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.27  E-value=0.0025  Score=48.83  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.||+|+|||++.+.+...
T Consensus        41 ~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.27  E-value=0.0024  Score=50.20  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~   36 (220)
                      .-|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999986

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.27  E-value=0.0032  Score=49.60  Aligned_cols=25  Identities=24%  Similarity=0.441  Sum_probs=21.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCc
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      .-.+++.||+|+|||++.+.|....
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHH
Confidence            3468999999999999999998764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.25  E-value=0.0043  Score=43.29  Aligned_cols=24  Identities=13%  Similarity=0.158  Sum_probs=21.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      ..|.+.|++|+|||++.+.|....
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            358999999999999999998764

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.23  E-value=0.0024  Score=54.76  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      .++++||||+|||||++.|.+..
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            58999999999999999998764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.20  E-value=0.0024  Score=51.61  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -++|.|++|+|||||++.+.+.
T Consensus        47 ~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           47 NIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999875

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.19  E-value=0.0027  Score=51.49  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      .++|.|++|+|||||++.+.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.19  E-value=0.0026  Score=53.87  Aligned_cols=21  Identities=33%  Similarity=0.621  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      ++++||||+|||||+++|.+.
T Consensus        67 vLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999886

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.18  E-value=0.014  Score=48.56  Aligned_cols=64  Identities=25%  Similarity=0.416  Sum_probs=40.3

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhh------------------CcCCC---CCcccceeeeeEEEE--Ee-CCeEEEEE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFAR------------------NEFDS---NSKATIGVEFQTQVV--DI-DGKEVKAQ   66 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~------------------~~~~~---~~~~t~~~~~~~~~i--~~-~~~~~~~~   66 (220)
                      ..+..=|+|+|+.++|||+|+|.|+.                  ..|..   ...-|.|+-.+...+  .. ++....+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            45677799999999999999996652                  12322   112233332222111  11 55678899


Q ss_pred             EEecCCcc
Q 027703           67 IWDTAGQE   74 (220)
Q Consensus        67 ~~d~~g~~   74 (220)
                      +.||.|..
T Consensus       144 llDTEG~~  151 (457)
T 4ido_A          144 LMDTQGTF  151 (457)
T ss_dssp             EEEECCBT
T ss_pred             EEeccCCC
Confidence            99999964

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.18  E-value=0.0023  Score=47.64  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.+.||||+||||+..+|...
T Consensus        61 ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           61 LVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998775

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.13  E-value=0.0028  Score=49.83  Aligned_cols=23  Identities=22%  Similarity=0.195  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .-+.+.||||+|||+|.+.+...
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35777899999999999999875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.13  E-value=0.0032  Score=49.55  Aligned_cols=25  Identities=16%  Similarity=0.319  Sum_probs=21.0

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +...+.+.||+|+|||++.+.+...
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999877654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.11  E-value=0.004  Score=50.28  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..++++|++|+||||+.+.|...
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            57999999999999999988653

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.09  E-value=0.0029  Score=51.51  Aligned_cols=57  Identities=16%  Similarity=0.082  Sum_probs=46.9

Q ss_pred             HHHH-hCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeec
Q 027703          145 LAEE-EGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKD  203 (220)
Q Consensus       145 ~~~~-~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~  203 (220)
                      +..+ +++.++|  ++++|+.....+.+.+.++ ..+.+++++||++. +..+||++++|+.
T Consensus       301 l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~th~~~-~~~~~d~~~~l~k  360 (371)
T 3auy_A          301 LIGNRVECIILDEPTVYLDENRRAKLAEIFRKV-KSIPQMIIITHHRE-LEDVADVIINVKK  360 (371)
T ss_dssp             HHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC-CSCSEEEEEESCGG-GGGGCSEEEEEEE
T ss_pred             HhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh-ccCCeEEEEEChHH-HHhhCCEEEEEEe
Confidence            3446 7888999  9999999999999988764 23457999999987 5789999999974

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.06  E-value=0.0012  Score=53.84  Aligned_cols=20  Identities=25%  Similarity=0.527  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 027703           17 IVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~   36 (220)
                      .+|+|+||+||||++.+|.-
T Consensus        28 ~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           28 VAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	220
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	7e-57
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-54
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	3e-52
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-51
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	3e-51
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-50
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-50
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	7e-48
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-47
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-46
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-46
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	3e-46
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-43
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-42
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-41
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	5e-41
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	9e-40
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-38
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-37
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	3e-37
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-36
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-36
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-36
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	5e-36
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-35
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-35
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	4e-35
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-34
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	3e-33
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-32
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-32
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	5e-32
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-31
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-30
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-30
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-30
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-30
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-29
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-29
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-28
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	4e-28
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	5e-27
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	5e-27
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-25
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	3e-25
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-25
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-25
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-25
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-22
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-22
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-22
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-20
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	6e-19
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	9e-19
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-16
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	4e-15
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-12
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	8e-09
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-06
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	1e-05
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	2e-05
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	4e-05
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	7e-05
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	2e-04
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	4e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	4e-04

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  176 bits (446), Expect = 7e-57
 Identities = 83/170 (48%), Positives = 124/170 (72%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +YLFK++LIGDS VGK+ +L RF+ + F+S   +TIG++F+ + +++DGK +K QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR +T+AYYRGA+G ++VYDIT   SFD+++ W+  +  H    V +M++GNKCD+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISR 181
           +  R VS E G+ LA + G+ FMETSA  + NVE AF  + R+I + + +
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  169 bits (429), Expect = 6e-54
 Identities = 92/185 (49%), Positives = 131/185 (70%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +YLFK++LIG+S VGKS LL RF+ + + ++  +TIGV+F+ + V++DGK VK QIWDTA
Sbjct: 4   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 63

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR +TS+YYRG+ G ++VYD+T + SF+ VK WL+E+  +  + V ++LVGNKCDL
Sbjct: 64  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 123

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKA 191
              R V  +  K  A+   + F+ETSALDSTNVE AF  + R+I  ++S++ LN    K 
Sbjct: 124 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKK 183

Query: 192 ELSVN 196
           E   N
Sbjct: 184 EDKGN 188

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  164 bits (415), Expect = 3e-52
 Identities = 78/166 (46%), Positives = 117/166 (70%), Gaps = 1/166 (0%)

Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           + KI+LIGDS VGKS LL RF  ++F+ +   TIG++F+ + VDI+GK+VK QIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
           ERFR +T+AYYRGA+G ++VYDIT   +F ++K+W + +  H +     +LVGNK D++ 
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME- 120

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
            R V+ ++G++LA+E G+ F+E+SA +  NV   F  + + I   I
Sbjct: 121 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  162 bits (411), Expect = 1e-51
 Identities = 107/171 (62%), Positives = 138/171 (80%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +YLFK+VLIGDS VGKSNLLSRF RNEF+  SK+TIGVEF T+ + +DGK +KAQIWDTA
Sbjct: 2   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 61

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQER+R +TSAYYRGAVGAL+VYDI +  ++++V+RWL+EL  H D+ +  MLVGNK DL
Sbjct: 62  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 121

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
             +R V T+E ++ AE+  L F+ETSALDSTNVE AF+ ++ EIY  +S+K
Sbjct: 122 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 172

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (409), Expect = 3e-51
 Identities = 84/164 (51%), Positives = 115/164 (70%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           Y+FK ++IGD  VGKS LL +F   +F ++   TIGVEF T+++++ G+++K QIWDTAG
Sbjct: 3   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 62

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERFRAVT +YYRGA GAL+VYDITRRS+++ +  WL +     +     +L+GNK DL+
Sbjct: 63  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 122

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
           + RDV+ EE K  AEE GL F+E SA    NVE AF    ++IY
Sbjct: 123 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (401), Expect = 4e-50
 Identities = 78/166 (46%), Positives = 114/166 (68%), Gaps = 1/166 (0%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNS-KATIGVEFQTQVVDIDGKEVKAQIWDT 70
           +  FK++L+GDS VGK+ LL RF    F + +  +T+G++F+ +V+D+DG +VK Q+WDT
Sbjct: 4   DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 63

Query: 71  AGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCD 130
           AGQERFR+VT AYYR A   L++YD+T ++SFD+++ WL E+  +    V  ML+GNK D
Sbjct: 64  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 123

Query: 131 LDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
               R V  E+G+ LA+E GL FMETSA    NV+ AF  + +E+ 
Sbjct: 124 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (400), Expect = 5e-50
 Identities = 74/167 (44%), Positives = 108/167 (64%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           ++LFKIVLIG++ VGK+ L+ RF +  F     ATIGV+F  + V+I+G++VK QIWDTA
Sbjct: 3   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 62

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR++T +YYR A   ++ YDIT   SF  +  WL E+  +    V  +LVGNK DL
Sbjct: 63  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 122

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
              R+VS +  +  +E + ++++ETSA +S NVE  F  +   + S 
Sbjct: 123 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  153 bits (386), Expect = 7e-48
 Identities = 72/165 (43%), Positives = 114/165 (69%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           +Y+FKI++IG+S+VGK++ L R+A + F     +T+G++F+ + +  + K +K QIWDTA
Sbjct: 3   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQER+R +T+AYYRGA+G +++YDIT   SF++V+ W  ++ T+       +LVGNKCD+
Sbjct: 63  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 122

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
           +  R VS+E G+ LA+  G  F E SA D+ NV+  FE ++  I 
Sbjct: 123 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 1e-47
 Identities = 92/171 (53%), Positives = 119/171 (69%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           YLFK ++IGD+ VGKS LL +F    F      TIGVEF  ++V+IDGK++K QIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QE FR++T +YYRGA GAL+VYDITRR +F+ +  WLE+   H  + +  ML+GNK DL+
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 183
           S RDV  EEG++ A E GL FMETSA  + NVE AF    +EIY  I + +
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 172

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (379), Expect = 1e-46
 Identities = 80/168 (47%), Positives = 113/168 (67%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
           ++LFK ++IG++  GKS LL +F   +F  +S  TIGVEF ++++++ GK VK QIWDTA
Sbjct: 3   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 62

Query: 72  GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
           GQERFR+VT +YYRGA GAL+VYDIT R +++++  WL +        +  +L GNK DL
Sbjct: 63  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 122

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
           D+ R+V+  E    A+E  L F+ETSAL   NVE AF    R+I + I
Sbjct: 123 DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 170

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (379), Expect = 1e-46
 Identities = 71/170 (41%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 11  EEYL--FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           E+ L   KI++IG+S VGKS+LL RF  + FD    ATIGV+F+ + + +DG + K  IW
Sbjct: 2   EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
           DTAGQERFR +T +YYRGA G ++VYD+TRR +F  +  WL EL T+C       ++   
Sbjct: 62  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 121

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
                 R+V   EG   A +  + F+E SA     V+ AFE ++ +I   
Sbjct: 122 KIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (377), Expect = 3e-46
 Identities = 64/183 (34%), Positives = 109/183 (59%), Gaps = 11/183 (6%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVV----------DIDGK 61
           +YL K++ +GDS VGK+  L R+  N+F+     T+G++F+ + V               
Sbjct: 3   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 62

Query: 62  EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AV 120
           +V  Q+WDTAGQERFR++T+A++R A+G L+++D+T + SF +V+ W+ +L  +      
Sbjct: 63  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 122

Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
             +L+GNK DL   R+V+  + + LA++ G+ + ETSA    NVE A E ++  I   + 
Sbjct: 123 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 182

Query: 181 RKV 183
           + V
Sbjct: 183 QCV 185

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (356), Expect = 2e-43
 Identities = 67/161 (41%), Positives = 107/161 (66%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L++RF  + FD+  +ATIG++F ++ + ++ + ++ Q+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFR++  +Y R +  A+VVYDIT  +SF    +W++++ T   + V  MLVGNK DL   
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           R VS EEG+  A+E  + F+ETSA    NV+  F  V   +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (348), Expect = 3e-42
 Identities = 68/164 (41%), Positives = 97/164 (59%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           Y FK+VL+G+  VGK++L+ R+  N+F+     T+G  F T+ ++I GK V   IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
           QERF A+   YYR + GA++VYDIT   SF  VK W++EL       +   +VGNK DL+
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
             R VS +E +S AE  G     TSA  +  +E  F  + + + 
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (344), Expect = 2e-41
 Identities = 76/170 (44%), Positives = 104/170 (61%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           G +   FK+VL+G+SAVGKS+L+ RF + +F    ++TIG  F TQ V +D   VK +IW
Sbjct: 1   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
           DTAGQER+ ++   YYRGA  A+VVYDIT   SF   K W++EL       +   L GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120

Query: 129 CDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
            DL + R V  +E +S A++  L FMETSA  S NV   F  + +++  N
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 5e-41
 Identities = 70/173 (40%), Positives = 108/173 (62%), Gaps = 6/173 (3%)

Query: 10  GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWD 69
           G+  LFK++L+GD  VGKS+L++R+  N+FD+    TIGVEF  + +++DG  V  QIWD
Sbjct: 2   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 61

Query: 70  TAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA----VGRMLV 125
           TAGQERFR++ + +YRG+   L+ + +    SF ++  W +E   + D         +++
Sbjct: 62  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 121

Query: 126 GNKCDLDSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYS 177
           GNK D+   R VSTEE ++   + G   + ETSA D+TNV AAFE  +R + +
Sbjct: 122 GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 9e-40
 Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 2/163 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F    F      TI  +F  + +++D      +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
           +F ++   Y +   G ++VY +  + SF  +K   +++        V  +LVGNK DL+S
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
            R+VS+ EG++LAEE G  FMETSA   T V+  F  ++R++ 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 2e-38
 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 14/182 (7%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
           G    + K V++GD AVGK+ LL  +A + F      T+  +     V + GK+    ++
Sbjct: 4   GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLY 62

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNK 128
           DTAGQE +  +    Y      L+ + +   +SF +VK             V  +L+G +
Sbjct: 63  DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQ 122

Query: 129 CDLD------------SIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
            DL               + +  E+G+ LA+E G   ++E SAL    ++  F+  I  I
Sbjct: 123 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

Query: 176 YS 177
            +
Sbjct: 183 LT 184

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (318), Expect = 2e-37
 Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 14/181 (7%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  N+F S    T+  +     V I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
            +  +    Y      LV + +   SSF++VK       TH       +LVG + DL   
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 135 RDV------------STEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREIYSNISR 181
                          + E  + LA + + + ++E SAL    ++  F+  I         
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 182 K 182
           K
Sbjct: 183 K 183

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (315), Expect = 3e-37
 Identities = 67/163 (41%), Positives = 97/163 (59%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K+ L+GD+ VGKS+++ RF  + FD N   TIG  F T+ V    +  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           RFRA+   YYRG+  A++VYDIT+  +F ++K W+ EL  H   ++   + GNKCDL  +
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177
           R+V   + K  A+     F+ETSA ++ N+   F  + R I S
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 167

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  125 bits (313), Expect = 1e-36
 Identities = 58/178 (32%), Positives = 105/178 (58%), Gaps = 4/178 (2%)

Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++++GDS VGK++L++++   +F +  KATIG +F T+ V +D + V  QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRW----LEELTTHCDTAVGRMLVGNKC 129
           ERF+++  A+YRGA   ++V+D+T  ++F ++  W    L + +         +++GNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 130 DLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 187
           DL++ +  +         +  + + ETSA ++ NVE AF+ + R      +   L ++
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 179

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  124 bits (310), Expect = 2e-36
 Identities = 76/163 (46%), Positives = 101/163 (61%), Gaps = 3/163 (1%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+VL+G++AVGKS+++ RF  N+F  N + TIG  F TQ V I+   VK +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL---D 132
           F ++   YYR A  ALVVYD+T+  SF   + W++EL       +   LVGNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             R V+ EEG+ LAEE+GL F ETSA    NV   F  +  +I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  123 bits (310), Expect = 2e-36
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 2/165 (1%)

Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L K++++G   VGKS L  +F  +EF  + + T    ++ +V  +DG+EV+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV-VLDGEEVQIDILDTAGQ 62

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLD 132
           E + A+   Y+R   G L V+ IT   SF +   + E++    +   V  +LVGNK DL+
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177
             R VS EE K+ A++  + ++ETSA    NV+  F  ++REI +
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 5e-36
 Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 2/165 (1%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
              K+V++G   VGKS L  +F ++ F S+       +  T++  +DG   +  I DTAG
Sbjct: 5   ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTAG 63

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG-RMLVGNKCDL 131
           QE F A+   Y R   G L+V+ I  R SF+ V +   ++    D      +LVGNK DL
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
           +S R V   E  +      + + E SA    NV+ AFE ++R + 
Sbjct: 124 ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 168

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 3e-35
 Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 3/165 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  +N F      TI   ++ QVV    +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQE 62

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
            + A+   Y R   G L V+ I    SF+ + ++ E++    D+  V  +LVGNKCD  +
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LA 121

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
            R V + + + LA   G+ ++ETSA     VE AF  ++REI  +
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 3e-35
 Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 3/164 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI  +   + V++D ++   +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
           +F A+   Y +   G  +VY IT +S+F+ ++   E++    DT  V  +LVGNKCDL+ 
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 134 IRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREIY 176
            R V  E+G++LA +     F+E+SA    NV   F  ++R+I 
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 4e-35
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 14/179 (7%)

Query: 10  GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWD 69
           G     K V++GD AVGK+ LL  +  N F      T+  +  +  V +DGK V   +WD
Sbjct: 1   GSPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWD 59

Query: 70  TAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKC 129
           TAGQE +  +    Y     +L+ + +   +SF++V+        H       +LVG K 
Sbjct: 60  TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 119

Query: 130 DLDSIRDVSTE------------EGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
           DL   +D   +            +G ++A+E G + ++E SAL    ++  F+  IR +
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 2e-34
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 2/163 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +++V++G   VGKS L  +F ++ F ++   TI  +  T+   ID +  +  I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDS 133
            F A+   Y R   G L+V+ +T R SF+ + ++  + L          +L+GNK DLD 
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
            R V+ EEG+ LA +  + +ME SA    NV+ AF  ++R I 
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (288), Expect = 3e-33
 Identities = 71/161 (44%), Positives = 99/161 (61%), Gaps = 5/161 (3%)

Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           +FKI++IGDS VGK+ L  RF    F   ++ATIGV+F+ + VDIDG+ +K Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 74  ERF-RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDL 131
           ERF +++   YYR     + VYD+T  +SF S+  W+EE   H     + R+LVGNKCDL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDST---NVEAAFE 169
            S   V T+  +  A+   +   ETSA +     +VEA F 
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFM 162

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (286), Expect = 1e-32
 Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 15/176 (8%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           KIV++GDS  GK+ LL  FA++ F  N   T+  E  T   +ID + ++  +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS-- 133
           +  V    Y  +   L+ +DI+R  + DSV +  +            +LVG K DL +  
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 134 ----------IRDVSTEEGKSLAEEEG-LFFMETSALDSTN-VEAAFEVVIREIYS 177
                        VS ++G ++A++ G   ++E SAL S N V   F V      +
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 3e-32
 Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 14/174 (8%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K+V++GD A GK+ LL   ++++F      T+  E     +++DGK+V+  +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
            +  +    Y      L+ + I    S +++         H    V  +LVGNK DL + 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 135 RDV------------STEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREI 175
                            EEG+ +A   G F +ME SA     V   FE+  R  
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (281), Expect = 5e-32
 Identities = 60/172 (34%), Positives = 103/172 (59%), Gaps = 7/172 (4%)

Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEV-KAQIWDTAG 72
           + K++++GDS VGK++L+ R+  +++    KATIG +F T+ V +DG +V   Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 73  QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR----MLVGNK 128
           QERF+++  A+YRGA   ++VYD+T  SSF+++K W +E   H +         +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 129 CDLDSIRDVSTEEGKSLAEEE--GLFFMETSALDSTNVEAAFEVVIREIYSN 178
            D +  + + +E+      +    +    TSA ++ NV+ AFE + R     
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  111 bits (278), Expect = 1e-31
 Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K+V++GD  VGKS L  +F +  F  +   TI  +   +  +ID +     + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDS 133
            F A+   Y R   G L+VY +T ++SF+ V R+ + +    D      +LV NK DL  
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFEVVIREIY 176
           +R V+ ++GK +A +  + ++ETSA D   NV+  F  ++R I 
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 167

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 2e-30
 Identities = 57/161 (35%), Positives = 93/161 (57%), Gaps = 1/161 (0%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K+V++G+ AVGKS+++ R+ +  F  + K TIGV+F  + + ++ ++V+  +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR 135
           F A+T AYYRGA   ++V+  T R SF+++  W E++       +   LV NK DL    
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLDDS 122

Query: 136 DVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
            +  EE + LA+   L F  TS  +  NV   F+ +  +  
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 4e-30
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 3/163 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +++ + G   VGKS+L+ RF +  F  +   T+   ++  +          QI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDK-SICTLQITDTTGSH 61

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR--MLVGNKCDLD 132
           +F A+           ++VY IT R S + +K   E++            MLVGNKCD  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             R+V + E ++LA      FMETSA  + NV+  F+ ++   
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  107 bits (268), Expect = 4e-30
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 9/165 (5%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G  A GK+ +L +    +    +  T+G   +T       K VK  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETV----TYKNVKFNVWDVGGQD 67

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDL-- 131
           + R +   YY G  G + V D   R   D  ++ L  +    +      ++  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 132 -DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
                ++  + G +   +   +   + A     +      +    
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  107 bits (266), Expect = 5e-30
 Identities = 26/164 (15%), Positives = 61/164 (37%), Gaps = 9/164 (5%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           +I+++G  A GK+ +L +    E       T        V  ++ K +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV----GNKCDL 131
            R +   Y++   G + V D   R   +  +  L  +    +     +LV     +  + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            +  +++ + G         +   T A     +    + +  ++
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 2e-29
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF+    AT+GVE    V   +   +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
           +F  +   YY  A  A++++D+T R ++ +V  W  +L   C+     +L GNK D+   
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDR 122

Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
           +     +      ++ L + + SA  + N E  F  + R++  + +
Sbjct: 123 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 166

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  105 bits (263), Expect = 3e-29
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G    GK+ +L R    E  +  K TIG   +T    +  K +K  +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVET----LSYKNLKLNVWDLGGQT 72

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRML-VGNKCDLD- 132
             R     YY      + V D T +    +  + L  +    +     +L   NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 133 --SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             S  +VS E      ++     + +SA+    +    + +I  I
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 2e-28
 Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 2/162 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            KI ++G  +VGKS+L  +F   +F  +   TI     T+++ ++G+E   Q+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWL-EELTTHCDTAVGRMLVGNKCDLDS 133
            +      Y     G ++VY +T   SF+ +K    + L       +  MLVGNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
            R +S EEGK+LAE     F+E+SA ++      F  +I E 
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 4e-28
 Identities = 60/164 (36%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K+ + G + VGKS L+ RF    F      T+          ID + V  +I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL-ESTYRHQATIDDEVVSMEILDTAGQE 61

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
                   + R   G ++VYDIT R SF+ V      L        V  +LVGNK DLD 
Sbjct: 62  DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFEVVIREIY 176
            R VSTEEG+ LA E    F E SA     N+   F  + RE+ 
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 164

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 5e-27
 Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 9/165 (5%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K++++G    GK+ +L +F+ NE              + V +I     +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVV-----HTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLD- 132
             R+  + YY      +VV D T R      +  L ++  H D    G ++  NK D+  
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 133 --SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
             ++ ++S     +  ++         AL    +    E ++  +
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.4 bits (246), Expect = 5e-27
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 3/169 (1%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
           +K++L+G   VGKS L   F   E    +          + + +DG+E    ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
             R +           ++VY +T + SF+       +L     T  V  +LVGNK DL  
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
            R+VS +EG++ A      F+ETSA    NV+A FE V+R+I      K
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 168

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 95.5 bits (236), Expect = 2e-25
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 9/167 (5%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +F   + D     TI       +  ++ +  K  IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
             R+    Y+    G + V D   R      +R L+ L      A    ++  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 134 IRDVST---EEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177
               +                     SA+   ++    + ++ +I S
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.2 bits (235), Expect = 3e-25
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 3/166 (1%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTA 71
             +++VLIG+  VGKS L + FA      +S    +G +   + + +DG+     + D  
Sbjct: 2   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61

Query: 72  -GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKC 129
             +     +     +     L+VY IT R+SF+       +L     T  +  +LVGNK 
Sbjct: 62  ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 121

Query: 130 DLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           DL   R+VS  EG++ A      F+ETSA    NV+  FE ++R++
Sbjct: 122 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.8 bits (237), Expect = 3e-25
 Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 43/201 (21%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K++L+G    GKS  + +        +   T G+         D + V  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQR 56

Query: 75  RFRAVTSAYYRGAVGALVVYDIT-----------RRSSFDSVKRWLEELTTHCDTAVGRM 123
             R      +      + +  ++                +S   +   +T         +
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 124 LVGNKCDLDSIRDVSTEEGKSLAEEEG--------------------------LFFMETS 157
           L  NK DL   + + +       E +G                          ++   T 
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 158 ALDSTNVEAAFEVVIREIYSN 178
           A D+ N+   F  V   I   
Sbjct: 177 ATDTENIRFVFAAVKDTILQL 197

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 94.6 bits (234), Expect = 5e-25
 Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 9/171 (5%)

Query: 9   GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW 68
              +   +I+L+G    GK+ LL + A  +    +  T G   ++       +  K  +W
Sbjct: 11  SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSV----QSQGFKLNVW 65

Query: 69  DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGN 127
           D  GQ + R    +Y+      + V D   R  F+   + L EL      + V  ++  N
Sbjct: 66  DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125

Query: 128 KCDL---DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           K DL       +++         +        SAL    V+     V + +
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 6e-25
 Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 7/173 (4%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            ++ ++GD+  GKS+L+ RF    +          E   + + +DG+     I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCD--LD 132
             +          +    + D     +   +   L  L       +   LVG +      
Sbjct: 64  DAKFSGW--ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121

Query: 133 SIRDVSTEEGKSLA-EEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 184
           S R V     ++L  + +   + ET A    NV+  F+ V +++ +   ++ L
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 174

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 87.8 bits (216), Expect = 1e-22
 Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 8/165 (4%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            ++ L+G    GK+  ++  A  +F+ +   T+G   +     I    V  ++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR----KITKGNVTIKLWDIGGQP 58

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDS 133
           RFR++   Y RG    + + D   +   ++ K  L  L           +++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 134 ---IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
               +++  +   S  ++  +     S  +  N++   + +I+  
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.0 bits (217), Expect = 3e-22
 Identities = 35/203 (17%), Positives = 56/203 (27%), Gaps = 45/203 (22%)

Query: 14  LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
           L KI+L+G    GKS  L +            T G+         + K V  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQ 54

Query: 74  ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-----------LTTHCDTAVGR 122
              R      +      L +   +         R               +     + V  
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 123 MLVGNKCDLDSIRDVSTEEGKSLAEEEG---------------------------LFFME 155
           +L  NK DL   +           E EG                           L+   
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 156 TSALDSTNVEAAFEVVIREIYSN 178
           T+A+++ N+   F  V   I  +
Sbjct: 175 TTAINTENIRLVFRDVKDTILHD 197

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 86.7 bits (213), Expect = 4e-22
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 9/167 (5%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            +I+++G    GK+ +L R    E       T        V  +  K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR-MLVGNKCDLD- 132
             R     YY      + V D   R      K  L  +    +      ++  NK D++ 
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 133 --SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177
             +  +++   G    ++      +TSA   T ++ A E ++  + S
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.8 bits (203), Expect = 1e-20
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 16/165 (9%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
           K++ +G    GK+ LL     +       AT+   +     ++    +K   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 76  FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVG-NKCDLDSI 134
            R +   Y+    G + + D      FD  +  L+ L    +      ++  NK D  + 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 135 RDVS----------TEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169
              +          T   + +  +  +     S +       AF+
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.4 bits (195), Expect = 6e-19
 Identities = 25/191 (13%), Positives = 55/191 (28%), Gaps = 23/191 (12%)

Query: 12  EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA 71
               +++L+G    GKS ++ +            T G+            +V   ++D  
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETK----FQVDKVNFHMFDVG 55

Query: 72  GQERFRAVTSAYYRGAVGALVVY-----------DITRRSSFDSVKRWLEELTTHCDTAV 120
           GQ   R      +      + V            D       +++  +           +
Sbjct: 56  GQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 115

Query: 121 GRMLVGNKCDLDSIRDVSTEEG-KSLAEEEGLFFMETSALDSTNVEAAFEVV---IREIY 176
             +L  NK DL + + ++ +   +    E   +     A      +         IR+ +
Sbjct: 116 SVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEF 175

Query: 177 SNISRKVLNSD 187
             IS    +  
Sbjct: 176 LRISTASGDGR 186

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.5 bits (192), Expect = 9e-19
 Identities = 30/201 (14%), Positives = 56/201 (27%), Gaps = 46/201 (22%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K++L+G    GKS ++ +              G+           K++  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEA-----GTGI----VETHFTFKDLHFKMFDVGGQR 53

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKR-----------WLEELTTHCDTAVGRM 123
             R      + G    +    ++      +              +         T    +
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 124 LVGNKCDLDSIRDVSTEEGKSLAEEEG--------------------------LFFMETS 157
           L  NK DL   +   +       E  G                          ++   T 
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 158 ALDSTNVEAAFEVVIREIYSN 178
           A D+ NV+  F+ V   I  N
Sbjct: 174 ATDTKNVQFVFDAVTDVIIKN 194

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 72.8 bits (177), Expect = 1e-16
 Identities = 32/177 (18%), Positives = 52/177 (29%), Gaps = 21/177 (11%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K+V +G    GK+ LL     +    +              ++    +    +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTIAGMTFTTFDLGGHI 68

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
           + R V   Y     G + + D          K  L+ L T    A V  +++GNK D   
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 128

Query: 134 IRDVS------------TEEGKSLAEE---EGLFFMETSALDSTNVEAAFEVVIREI 175
                            T +G    +E     L     S L        F  + + I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.3 bits (168), Expect = 4e-15
 Identities = 20/161 (12%), Positives = 49/161 (30%), Gaps = 7/161 (4%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
            ++ +G    GK+ L  R    ++      +I        V+ +       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 76  FRAVTSAYYRGAVGALVVYDI-TRRSSFDSVKRWLEELTTHCDTAVGRM---LVGNKCDL 131
              +   +   A   + V D    +     V  +L ++              +  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172
              +  S +  +   E+E      T +   + ++++     
Sbjct: 121 AMAK--SAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPA 159

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.6 bits (148), Expect = 2e-12
 Identities = 31/210 (14%), Positives = 73/210 (34%), Gaps = 27/210 (12%)

Query: 13  YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
           Y   I++ G    GK++LL+    +      + T+  +      D DG  V   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 73  QERFRAVTSAYYRGAVGA-----LVVYDITRRSSFDSVKRWLEELTTHCDTA----VGRM 123
             + R   S Y +           +V          +   +L ++ +  +++    +  +
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 124 LVGNKCDLDSIRDVSTEEGKSLAEEE----------GLFFMETSALDSTNVEAAFEVVIR 173
           +  NK +L + R     + K   E E           L  +E    +    E   +V+  
Sbjct: 116 IACNKSELFTARPP--SKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173

Query: 174 EIYSNISRKVLNSDAYKAELSVNRVTLVKD 203
                 +    +  A++  ++  +++  ++
Sbjct: 174 TDGFKFANLEASVVAFEGSINKRKISQWRE 203

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 50.9 bits (120), Expect = 8e-09
 Identities = 26/161 (16%), Positives = 45/161 (27%), Gaps = 1/161 (0%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
            K+V+ G    GKS+LL+  A  E    +    G         I    +   I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 75  RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
                            +          D       +        + R+       +   
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +   T E   ++E  G   +  SA     V+     + + +
Sbjct: 121 KADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 7/165 (4%)

Query: 17  IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ--- 73
           + L+G    GKS+LL+   R            +      V    +E +  + D  G    
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLS-PNLGVVEVSEEERFTLADIPGIIEG 62

Query: 74  -ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLE--ELTTHCDTAVGRMLVGNKCD 130
               + +   + R      V+  +   +            E+  +    + R  +     
Sbjct: 63  ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 122

Query: 131 LDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
           +D + + + +        EGL  +  SAL    + A  E +   +
Sbjct: 123 VDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALV 167

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 19/168 (11%)

Query: 16  KIVLIGDSAVGKSNLLSRFARNE---------FDSNSKATIGVEFQTQVVDIDGKEVKAQ 66
           ++V++G   VGKS LL+R    +            +  +   V        +D   V+++
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 67  IWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVG 126
             D   +             A   L V D +     +  K             + ++ V 
Sbjct: 62  TNDLVERLGIERTLQE-IEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 127 NKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
            K + + I+         L  +  +     SAL    +E   E + RE
Sbjct: 121 EKINEEEIK-------NKLGTDRHMVK--ISALKGEGLEKLEESIYRE 159

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 10/146 (6%)

Query: 11  EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQ--VVDIDGKEVKAQIW 68
           +  +  + + G++  GKS+ ++       +    A  GV   T                W
Sbjct: 53  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112

Query: 69  DTAGQERFRAVTSAY---YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV 125
           D  G          Y    +       +     R  F      + +  +          V
Sbjct: 113 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATR--FKKNDIDIAKAISMMKKEF--YFV 168

Query: 126 GNKCDLDSIRDVSTEEGKSLAEEEGL 151
             K D D I + +  E ++  +E+ L
Sbjct: 169 RTKVDSD-ITNEADGEPQTFDKEKVL 193

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 13/137 (9%), Positives = 35/137 (25%), Gaps = 10/137 (7%)

Query: 15  FKIVLIGDSAVGKSNLLSR-FARNEFDSNSKATIGVEFQTQVVDIDGKEV----KAQIWD 69
             I+++G   VGKS+ ++          +   + G           G  +       + +
Sbjct: 33  LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92

Query: 70  TAGQERF---RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR--ML 124
                        +    +     L V  +      +  K   + +T      +    ++
Sbjct: 93  GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIV 152

Query: 125 VGNKCDLDSIRDVSTEE 141
                       +  +E
Sbjct: 153 ALTHAQFSPPDGLPYDE 169

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 7e-05
 Identities = 17/177 (9%), Positives = 51/177 (28%), Gaps = 11/177 (6%)

Query: 11  EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDT 70
            +   ++   G S  GKS+ L+     +  + +  T G      + ++   +    +   
Sbjct: 13  SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGY 72

Query: 71  AGQ-------ERFRAVTSAYYRGAVGALVVYDITRRSSF--DSVKRWLEELTTHCDTAVG 121
                      +++     Y         +  +        D  ++ +E         + 
Sbjct: 73  GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV 132

Query: 122 RMLVGNKCDLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREIYS 177
            +   +K    + +       +++    G       S+L    V+   +  +   +S
Sbjct: 133 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQ-KLDTWFS 188

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 32/185 (17%)

Query: 17  IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF 76
           I+  G S VGKS L+ R       +  K   G         I+ +    +I D  G    
Sbjct: 3   IIFAGRSNVGKSTLIYRL------TGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFM 56

Query: 77  RAVTSAYYRGAVGA-------------LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRM 123
             +                        + V  +  +++ + +KRW +      D    + 
Sbjct: 57  MGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 116

Query: 124 L---------VGNKCDL----DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV 170
           L           NK D       + +   E+ +    E    F+  SA    N+E     
Sbjct: 117 LRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNR 176

Query: 171 VIREI 175
           +   I
Sbjct: 177 IFEVI 181

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 21/163 (12%), Positives = 42/163 (25%), Gaps = 5/163 (3%)

Query: 17  IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF 76
           + ++G   VGKS LL+     +    S        +     +     +    DT G  + 
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66

Query: 77  RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD 136
                 +    V   +          D       E           +       + +  D
Sbjct: 67  MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 126

Query: 137 VSTEEGKSLAEEEGLF----FMETSALDSTNVEAAFEVVIREI 175
            +    +++     L         SALD   V      ++  +
Sbjct: 127 AAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 169

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 26/176 (14%), Positives = 53/176 (30%), Gaps = 13/176 (7%)

Query: 15  FKIVLIGDSAVGKSNLLSRFARNE-----------FDSNSKATIGVEFQTQVVDIDGKEV 63
            K+ ++G   VGKS L +     E            D           +   VD  G   
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68

Query: 64  KAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRM 123
           K+++     ++            A   ++V D T+  +    +           + V   
Sbjct: 69  KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128

Query: 124 LVGNKCDLDSIRDVSTEEGKS-LAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
                   +   D  T+  +  L   +    + TSA    N++   +  +   Y++
Sbjct: 129 KWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMID-AMNLAYAS 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.98
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.98
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.98
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.97
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.97
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.97
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.96
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.94
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.94
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.94
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.93
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.93
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.92
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.92
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.9
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.9
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.9
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.89
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.89
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.89
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.89
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.88
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.88
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.88
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.87
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.87
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.87
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.87
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.87
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.85
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.85
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.85
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.84
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.84
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.84
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.84
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.83
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.83
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.83
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.81
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.81
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.79
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.79
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.79
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.78
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.78
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.77
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.76
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.76
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.74
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.7
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.67
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.63
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.62
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.61
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.58
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.55
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.5
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.48
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.47
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.41
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.35
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.34
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.31
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.28
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.26
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.2
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.19
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.07
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.04
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.04
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.97
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.92
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.88
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.85
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.85
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.53
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.53
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.19
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.15
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.01
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.98
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.96
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.82
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.82
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.82
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.81
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.8
d1okkd2	207	GTPase domain of the signal recognition particle r	97.78
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.76
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.7
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.66
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.65
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.6
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.58
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.57
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.56
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.54
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.52
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.51
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.51
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.49
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.46
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.45
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.44
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.41
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.36
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.35
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.33
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.29
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.28
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.27
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.25
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.24
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.24
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.23
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.21
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.2
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.19
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.19
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.19
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.15
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.14
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.14
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.1
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.1
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.09
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.07
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.03
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.99
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.97
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.97
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.94
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.92
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.9
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.86
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.86
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.84
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.83
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.83
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.78
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.78
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.75
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.73
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.72
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.67
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.62
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.61
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.6
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.59
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.53
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.5
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.5
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.46
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.45
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.45
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.44
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.41
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.41
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.39
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.39
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.37
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.19
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.18
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.05
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.05
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.03
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.01
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.0
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.96
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.95
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.84
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.76
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.66
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.66
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.64
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.61
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.58
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.56
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.45
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.28
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.27
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.22
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.22
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.19
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.19
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.14
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.14
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.1
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.08
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.08
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.07
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.0
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.95
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.92
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.89
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.85
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.62
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.42
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.39
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.35
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.29
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.28
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.19
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.19
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.07
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.05
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.05
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.93
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.8
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.18
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.01
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.76
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.71
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.81
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	90.32
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	90.16
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	89.36
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.13
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.61
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.51
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.37
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.78
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	86.63
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.3
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	86.27
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	86.06
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.9
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	85.72
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	85.64
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	84.55
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	84.36
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	83.46
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	82.78
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	81.95

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.3e-33  Score=204.34  Aligned_cols=166  Identities=43%  Similarity=0.799  Sum_probs=154.3

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ++.+||+++|++|||||||++++.+..+.+.+.++.+.+.....+...+..+.+.+||++|++.+...+..+++.+++++
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i   82 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   82 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            57899999999999999999999999999999999888888888888888999999999999999989999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|||.++..++..+..|+...........|+++++||.|+...+.+..++++.+++..+++|+++||+++.|++++|++|
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  162 (169)
T d3raba_          83 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL  162 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHH
Confidence            99999999999999999988777666779999999999998888889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027703          172 IREIYS  177 (220)
Q Consensus       172 ~~~~~~  177 (220)
                      .+.+.+
T Consensus       163 ~~~i~e  168 (169)
T d3raba_         163 VDVICE  168 (169)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            988754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-33  Score=201.62  Aligned_cols=164  Identities=51%  Similarity=0.873  Sum_probs=153.5

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ++.+||+++|++|||||||++++.+..++..++++.+.+.....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            46799999999999999999999999999999988888888888889999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|||.++..+|+.+..|+..+........|++++|||+|+...+....++++.+++..+++|+++||+++.|++++|++|
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i  161 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA  161 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999998887777789999999999998888889999999999999999999999999999999999


Q ss_pred             HHHH
Q 027703          172 IREI  175 (220)
Q Consensus       172 ~~~~  175 (220)
                      .+.+
T Consensus       162 ~~~i  165 (166)
T d1z0fa1         162 AKKI  165 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-33  Score=205.51  Aligned_cols=164  Identities=41%  Similarity=0.704  Sum_probs=146.8

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      +.+||+++|.+|||||||++++.+..|+..+.+|.+.......+..++..+.+.+||++|+..+...+..++++++++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            57999999999999999999999999999999999988888888889999999999999999988889999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      |||.+++.+|+.+..|+..+........|++++|||+|+...+.++.+++..+++..+++|+++||+++.|++++|++|.
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999887666556788899999999988889999999999999999999999999999999999999


Q ss_pred             HHHH
Q 027703          173 REIY  176 (220)
Q Consensus       173 ~~~~  176 (220)
                      +.+.
T Consensus       162 ~~i~  165 (167)
T d1z08a1         162 KRMI  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-33  Score=202.17  Aligned_cols=166  Identities=45%  Similarity=0.760  Sum_probs=154.1

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ++.+||+++|++|||||||++++.+..|+..+.++.+.+.....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            56899999999999999999999999999999999888888888999999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|+|.++..++..+..|+..+........|++++|||+|+...+.+..+++..+++..+++++++||+++.|++++|.+|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l  162 (171)
T d2ew1a1          83 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  162 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHH
Confidence            99999999999999999998877766778999999999998878889999999999999999999999999999999988


Q ss_pred             HHHHHH
Q 027703          172 IREIYS  177 (220)
Q Consensus       172 ~~~~~~  177 (220)
                      .+.+.+
T Consensus       163 ~~~l~~  168 (171)
T d2ew1a1         163 ACRLIS  168 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-33  Score=202.12  Aligned_cols=161  Identities=42%  Similarity=0.743  Sum_probs=151.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      |||+++|++|||||||++++.+..++..+.++.+..........++..+.+.+||++|+..+...+..++..++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999999999999888888888888888999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      |.++..+|..+..|+..+........|++++|||.|+...+....+++..+++..+++|+++||+++.|++++|++|++.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999877666789999999999998888899999999999999999999999999999999999876


Q ss_pred             H
Q 027703          175 I  175 (220)
Q Consensus       175 ~  175 (220)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            4

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-32  Score=199.14  Aligned_cols=165  Identities=33%  Similarity=0.503  Sum_probs=149.2

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      -|++||+++|++|||||||++++.+..+.+.+.+|.+.. ....+..++..+.+.+||++|...+...+..+++.+++++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            468999999999999999999999999999988887643 3456778899999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC-CHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFE  169 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l~~  169 (220)
                      +|||++++.+|..+..|+..+.+. .....|++++|||+|+...+.++.+++..+++..+++|+++||+++. |++++|+
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            999999999999999999987655 34578999999999999888999999999999999999999999876 9999999


Q ss_pred             HHHHHHHH
Q 027703          170 VVIREIYS  177 (220)
Q Consensus       170 ~l~~~~~~  177 (220)
                      .|.+.+.+
T Consensus       161 ~l~~~i~~  168 (169)
T d1x1ra1         161 DLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.9e-32  Score=200.16  Aligned_cols=163  Identities=37%  Similarity=0.558  Sum_probs=146.0

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      |++||+++|++|||||||++++.+..|...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            689999999999999999999999999999999987554 4567789999999999999999888888999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      |||.++..+|+.+..|+.++.... .++.|++++|||.|+...+.++.++++.+++..++.|+++||+++.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999876543 4678999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027703          172 IREIY  176 (220)
Q Consensus       172 ~~~~~  176 (220)
                      ++.+.
T Consensus       162 ~~~i~  166 (168)
T d1u8za_         162 MREIR  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.9e-33  Score=201.07  Aligned_cols=161  Identities=35%  Similarity=0.637  Sum_probs=149.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..++..+.+|.+.......+..++..+.+.+||++|+..+...+..+++.++++++||
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~   82 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVF   82 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEE
Confidence            79999999999999999999999999999999988888888888999999999999999998888999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      |.+++.+|+.+..|+..+..... ..|+++||||+|+...+.+..++++++++..+++|+++||+++.|++++|++|.+.
T Consensus        83 d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~  161 (164)
T d1z2aa1          83 STTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK  161 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred             eccchhhhhhcccccccccccCC-CceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHH
Confidence            99999999999999998876543 58999999999998888999999999999999999999999999999999999887


Q ss_pred             HH
Q 027703          175 IY  176 (220)
Q Consensus       175 ~~  176 (220)
                      +.
T Consensus       162 ~l  163 (164)
T d1z2aa1         162 HL  163 (164)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-32  Score=199.38  Aligned_cols=167  Identities=55%  Similarity=0.919  Sum_probs=150.8

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      +.+||+|+|++|||||||++++.+..+++.+.++.+...........+..+.+.+||++|+..+...+..++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            57999999999999999999999999999999888887777888888889999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      |||.+++.+|+.+..|+..+......++|++++|||+|+...+....+++..++++.+++|+++||++|.|++++|+.|.
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999998877777899999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 027703          173 REIYSNI  179 (220)
Q Consensus       173 ~~~~~~~  179 (220)
                      +.+.++.
T Consensus       162 ~~i~~~~  168 (173)
T d2a5ja1         162 KEIYRKI  168 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9876543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-32  Score=200.28  Aligned_cols=168  Identities=33%  Similarity=0.494  Sum_probs=151.4

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      ++..++||+++|++|||||||++++.+..|...+.++.. ......+.+++..+.+.+||++|...+...+..+++.+++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            466789999999999999999999999999998888764 4445678889999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF  168 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  168 (220)
                      +++|||.++..+|..+..|+..+... .....|++++|||+|+...+....+++..++...+++|++|||+++.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999886543 34678999999999998888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          169 EVVIREIYSN  178 (220)
Q Consensus       169 ~~l~~~~~~~  178 (220)
                      +.|++.+.+.
T Consensus       161 ~~l~~~i~k~  170 (173)
T d2fn4a1         161 EQLVRAVRKY  170 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988653

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-32  Score=198.02  Aligned_cols=162  Identities=30%  Similarity=0.386  Sum_probs=131.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..+....+ +. .......+.+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~~~-~~-~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPEAE-AA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCcCC-ee-eeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            4899999999999999999999987655432 22 333456677899999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      ||++++.+|+.+..|+..+.... ....|++++|||+|+...+.+...++..++...+++|+++||+++.|++++|+.|.
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999999876654 45689999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027703          173 REIYS  177 (220)
Q Consensus       173 ~~~~~  177 (220)
                      +.+..
T Consensus       159 ~~i~~  163 (168)
T d2gjsa1         159 RQIRL  163 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-32  Score=198.11  Aligned_cols=166  Identities=63%  Similarity=1.038  Sum_probs=151.4

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ++.+||+++|++|||||||++++.+..+...+.++.+.......+.+++..+.+.+||++|.+.+...+..+++.+++++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            56899999999999999999999999999999988888888888889999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|||.+++.+|..+.+|+..+.....+..|++++|||+|+...+....+.+..+......+++++||+++.|++++|+++
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l  161 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  161 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999999888777789999999999998777888888889999999999999999999999999999


Q ss_pred             HHHHHH
Q 027703          172 IREIYS  177 (220)
Q Consensus       172 ~~~~~~  177 (220)
                      .+.+.+
T Consensus       162 ~~~i~~  167 (175)
T d2f9la1         162 LTEIYR  167 (175)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.9e-32  Score=196.56  Aligned_cols=162  Identities=41%  Similarity=0.733  Sum_probs=151.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|.+|||||||++++....|...+.+|.+..........++....+.+||++|+..+...+..+++.++++++|
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIV   83 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEEE
Confidence            58999999999999999999999999999999998888888888888888999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      ||.+++.+|..+..|+..+........|++++|||+|+...+.+..++++.++.+.+++|+++||+++.|++++|.+|.+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~  163 (167)
T d1z0ja1          84 YDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISR  163 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             eeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999998887777778999999999999888899999999999999999999999999999999999987


Q ss_pred             HH
Q 027703          174 EI  175 (220)
Q Consensus       174 ~~  175 (220)
                      .+
T Consensus       164 ~i  165 (167)
T d1z0ja1         164 RI  165 (167)
T ss_dssp             HC
T ss_pred             hC
Confidence            64

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-32  Score=197.54  Aligned_cols=167  Identities=47%  Similarity=0.814  Sum_probs=155.0

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ++.+||+++|++|||||||++++.+..+...+.++.+.......+..++..+.+.+||++|+..+...+..+++.+++++
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            56799999999999999999999999999999999888877777888888999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|||.++..++..+..|+..+.....+.+|+++++||.|+...+....+++..++...+++|+++||+++.|++++|+++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l  162 (174)
T d2bmea1          83 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence            99999999999999999999877777789999999999998888888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027703          172 IREIYSN  178 (220)
Q Consensus       172 ~~~~~~~  178 (220)
                      .+.+.++
T Consensus       163 ~~~i~~~  169 (174)
T d2bmea1         163 ARKILNK  169 (174)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-32  Score=198.51  Aligned_cols=166  Identities=45%  Similarity=0.729  Sum_probs=154.6

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      ++-..+||+++|++|||||||++++.+..|++.+.++.+.......+...+..+.+.+||++|+..+...+..+++.+++
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   81 (170)
T d1r2qa_           2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA   81 (170)
T ss_dssp             CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred             CceeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcce
Confidence            34567999999999999999999999999999999999988888888888889999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      +++++|.++..+|..+..|+..+.....++.|++++|||+|+...+.++.+++..++...+++|+++||+++.|++++|+
T Consensus        82 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~  161 (170)
T d1r2qa_          82 AIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHH
Confidence            99999999999999999999988777777899999999999998889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027703          170 VVIREI  175 (220)
Q Consensus       170 ~l~~~~  175 (220)
                      .|.+.+
T Consensus       162 ~l~~~i  167 (170)
T d1r2qa_         162 AIAKKL  167 (170)
T ss_dssp             HHHHTS
T ss_pred             HHHHHH
Confidence            998755

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-32  Score=197.67  Aligned_cols=163  Identities=34%  Similarity=0.463  Sum_probs=147.9

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..+||+++|++|||||||++++.+..|...+.+|.+... ...+.+++..+.+.+||++|...+...+..++..++++++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            458999999999999999999999999999998887654 4667889999999999999999888888899999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      |||++++.+|..+..|+..+... .....|++++|||+|+...+.++.++++.++++.+++|+++||+++.|++++|+.|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999999887654 34578999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027703          172 IREIY  176 (220)
Q Consensus       172 ~~~~~  176 (220)
                      ++.+.
T Consensus       162 i~~~~  166 (167)
T d1xtqa1         162 ILEAE  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            87654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.3e-32  Score=199.11  Aligned_cols=167  Identities=50%  Similarity=0.915  Sum_probs=126.6

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ++.+||+++|.+|||||||++++.+..++..+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+++++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            57899999999999999999999999999999999988888889999999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      +|||++++.++..+..|+..+........|+++++||.|+...+....+++.+++...+++|+++||+++.|+.++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l  163 (173)
T d2fu5c1          84 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL  163 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred             EEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999998877777779999999999998888888888999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027703          172 IREIYSN  178 (220)
Q Consensus       172 ~~~~~~~  178 (220)
                      .+.+..+
T Consensus       164 ~~~i~~k  170 (173)
T d2fu5c1         164 ARDIKAK  170 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-32  Score=198.10  Aligned_cols=163  Identities=31%  Similarity=0.430  Sum_probs=145.2

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      +.+||+++|++|||||||++++.+..|...+.+|.+... .....+++..+.+.+||++|+..+......+++.++++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            358999999999999999999999999999999887544 3456678888999999999999999899999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhC--CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHC--DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      |||.+++.+|..+..|+..+....  ....|+++||||+|+...+.+..+++..+++..+++|+++||+++.|++++|+.
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999999999988865432  356899999999999888899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027703          171 VIREIY  176 (220)
Q Consensus       171 l~~~~~  176 (220)
                      |++++.
T Consensus       160 l~~~~~  165 (171)
T d2erxa1         160 LLNLEK  165 (171)
T ss_dssp             HHHTCC
T ss_pred             HHHHHH
Confidence            987653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-31  Score=198.64  Aligned_cols=167  Identities=28%  Similarity=0.427  Sum_probs=145.6

Q ss_pred             CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703            9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (220)
Q Consensus         9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~   88 (220)
                      .++...+||+++|.+|||||||++++....|+..+.+|.+. .....+...+..+.+.+||++|+..+...+..+++.++
T Consensus         4 ~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~   82 (185)
T d2atxa1           4 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   82 (185)
T ss_dssp             CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceee-eeeEEEeeCCceEEeecccccccchhhhhhhhcccccc
Confidence            35778999999999999999999999999999999998864 34566677888899999999999999989999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhC-CeEEE
Q 027703           89 GALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEG-LFFME  155 (220)
Q Consensus        89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~  155 (220)
                      ++++|||++++.+|+.+..|+.........+.|++++|||.|+..            .+.++.+++.++++..+ +.|++
T Consensus        83 ~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E  162 (185)
T d2atxa1          83 VFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  162 (185)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             eeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEE
Confidence            999999999999999887766665444456789999999999863            46788899999999887 68999


Q ss_pred             eccCCCCCHHHHHHHHHHHHH
Q 027703          156 TSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       156 ~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      |||+++.|++++|+.+.+.+.
T Consensus       163 ~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         163 CSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             ecCCCCcCHHHHHHHHHHHHc
Confidence            999999999999999887653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-31  Score=197.94  Aligned_cols=170  Identities=51%  Similarity=0.857  Sum_probs=157.5

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      ..+..+||+|+|++|||||||++++.+..++..+.+|.+.......+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            45788999999999999999999999999999999998888877888899999999999999999999899999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      +++|||.+++.++..+..|+..+........|+++++||.|+...+....+++..+....++.|+++||+++.|++++|+
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            99999999999999999998888777777899999999999998889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027703          170 VVIREIYSNI  179 (220)
Q Consensus       170 ~l~~~~~~~~  179 (220)
                      +|.+.+.+..
T Consensus       162 ~l~~~i~~~~  171 (194)
T d2bcgy1         162 TMARQIKESM  171 (194)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            9998887643

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-31  Score=193.44  Aligned_cols=162  Identities=35%  Similarity=0.548  Sum_probs=143.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||++++.+..|...+.+|.+ +.....+.+++..+.+.+||++|...+...+..+++.++++++||
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~   84 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVF   84 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEee
Confidence            8999999999999999999999999999888876 445677788999999999999999998888889999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      |.+++.+|..+..|+..+... .....|++++|||+|+...+.+..+++.++++..+++|+++||+++.|++++|+.|.+
T Consensus        85 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~  164 (171)
T d2erya1          85 SVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR  164 (171)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHH
Confidence            999999999999999876543 3456899999999999888899999999999999999999999999999999999999


Q ss_pred             HHHH
Q 027703          174 EIYS  177 (220)
Q Consensus       174 ~~~~  177 (220)
                      .+.+
T Consensus       165 ~i~k  168 (171)
T d2erya1         165 VIRK  168 (171)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=5.9e-31  Score=192.39  Aligned_cols=162  Identities=46%  Similarity=0.727  Sum_probs=149.3

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      .++||+++|++|||||||++++.+..|.+.+.+|.+.......+..++..+.+.+||++|+..+...+..++..++++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            47899999999999999999999999999999999888888888899999999999999999988889999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCC---CCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD---SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      |||.+++.+|..+..|+..+........|+++++||.|+.   ..+.+..+++..++++.+++|+++||+++.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            9999999999999999988777777778999999999974   3478888999999999999999999999999999999


Q ss_pred             HHHHH
Q 027703          170 VVIRE  174 (220)
Q Consensus       170 ~l~~~  174 (220)
                      .|.+.
T Consensus       162 ~i~~~  166 (170)
T d1ek0a_         162 GIGEK  166 (170)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            88754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1e-30  Score=191.09  Aligned_cols=166  Identities=47%  Similarity=0.788  Sum_probs=142.6

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCC-cccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNS-KATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~-~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      .+..+||+++|++|||||||++++.+..+...+ .++.+.......+..++..+.+.+||++|++.+...+..+++.+++
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            356899999999999999999999999876554 4556677777788889999999999999999998899999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      +++|||.+++.++..+..|+..+........|+++++||.|+...+.+..+++..+++..+++|+++||+++.|++++|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999887776667789999999999998889999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027703          170 VVIREIY  176 (220)
Q Consensus       170 ~l~~~~~  176 (220)
                      +|.+.+.
T Consensus       163 ~l~~~i~  169 (170)
T d2g6ba1         163 AIAKELK  169 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9997764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.8e-32  Score=200.60  Aligned_cols=164  Identities=30%  Similarity=0.570  Sum_probs=141.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      -+||+++|++|||||||++++.+..|...+.+|++.+.....+..++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999999999998888888888888899999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR  173 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  173 (220)
                      ||++++.+|+.+..|+..+.... +..|++++|||+|+...+.  .+++..++...+++|+++||+++.|++++|++|.+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~--~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCC--TTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhh--hhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999998876654 4689999999999976543  34455778888999999999999999999999998


Q ss_pred             HHHHHhh
Q 027703          174 EIYSNIS  180 (220)
Q Consensus       174 ~~~~~~~  180 (220)
                      .+.++..
T Consensus       160 ~l~~~~~  166 (170)
T d1i2ma_         160 KLIGDPN  166 (170)
T ss_dssp             HHHTCTT
T ss_pred             HHccCCC
Confidence            8765433

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.9e-31  Score=192.79  Aligned_cols=161  Identities=35%  Similarity=0.571  Sum_probs=146.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..|...+.++.+ +.....+..++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            58999999999999999999999999999888876 34456677888899999999999998888899999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      ||.+++.+|..+..|+..+.... ..+.|++++|||+|+...+....+++..++++.+++|+++||+++.|++++|+.|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~  161 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHH
Confidence            99999999999999998876543 45689999999999988888999999999999999999999999999999999998


Q ss_pred             HHH
Q 027703          173 REI  175 (220)
Q Consensus       173 ~~~  175 (220)
                      +.+
T Consensus       162 ~~i  164 (167)
T d1kaoa_         162 RQM  164 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.9e-31  Score=193.27  Aligned_cols=162  Identities=30%  Similarity=0.434  Sum_probs=141.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      -.||+|+|++|||||||++++.+..|+..+.+|.+. .....+..++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-eccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            379999999999999999999999999999988763 3446677888899999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhC-CeEEEeccCC
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEG-LFFMETSALD  160 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  160 (220)
                      ||.+++.+|+.+..|+........++.|++++|||+|+..            .+.+..+++..++++.+ ++|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999988877665444456799999999999863            24577889999999987 5899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREIY  176 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~  176 (220)
                      +.|++++|+.+.+.+.
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999988764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.3e-31  Score=191.31  Aligned_cols=162  Identities=37%  Similarity=0.472  Sum_probs=141.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..|++.+.||++.... ..+..++..+.+.+||++|+..+. ....+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            489999999999999999999999999999999876553 455678889999999999987664 455678899999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHh-hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC-CHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTT-HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFEVV  171 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l~~~l  171 (220)
                      ||++++.+|..+..|+..... ......|++++|||+|+...+.++.+++..++++.+++|+++||+++. |++++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            999999999999888765443 334578999999999998888899999999999999999999999998 599999999


Q ss_pred             HHHHHH
Q 027703          172 IREIYS  177 (220)
Q Consensus       172 ~~~~~~  177 (220)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (168)
T d2atva1         160 CREVRR  165 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9.8e-31  Score=190.51  Aligned_cols=162  Identities=36%  Similarity=0.575  Sum_probs=145.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..++..+.++.+.... ..+...+..+.+.+||++|...+...+..+++.++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            489999999999999999999999999998988876554 4466788889999999999999888889999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      ||.+++.+|+.+.+|+..+.... ..+.|++++|||.|+.. +....++++.+++..+++|+++||+++.|++++|++|.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999999877654 35689999999999864 67788899999999999999999999999999999999


Q ss_pred             HHHHH
Q 027703          173 REIYS  177 (220)
Q Consensus       173 ~~~~~  177 (220)
                      +.+.+
T Consensus       161 ~~i~~  165 (166)
T d1ctqa_         161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            87753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9.3e-31  Score=190.81  Aligned_cols=161  Identities=34%  Similarity=0.550  Sum_probs=145.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|.+|||||||++++....|...+.++.+... ...+..++..+.+.+||++|+..+...+..+++.++++++|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            58999999999999999999999999999998887544 45667788899999999999999998999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-hCCeEEEeccCCCCCHHHHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVV  171 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~l~~~l  171 (220)
                      ||.+++.+|+.+..|+..+... ..+..|++++|||+|+...+....+++..++.+ .+++|+++||+++.|++++|++|
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l  161 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999887654 346789999999999998888899999999887 57899999999999999999999


Q ss_pred             HHHH
Q 027703          172 IREI  175 (220)
Q Consensus       172 ~~~~  175 (220)
                      .+.+
T Consensus       162 ~~~i  165 (167)
T d1c1ya_         162 VRQI  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.2e-31  Score=195.91  Aligned_cols=168  Identities=38%  Similarity=0.704  Sum_probs=148.3

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCC----------eEEEEEEEecCCcchhhhhhH
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG----------KEVKAQIWDTAGQERFRAVTS   81 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~----------~~~~~~~~d~~g~~~~~~~~~   81 (220)
                      +..+||+++|++|||||||++++.+..+...+.++.+.......+.+++          ..+.+.+||++|+..+...+.
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            5679999999999999999999999999998888877766666665543          346889999999999999999


Q ss_pred             HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCC
Q 027703           82 AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALD  160 (220)
Q Consensus        82 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (220)
                      .++++++++++|||.+++.+|+.+..|+.++.... ...+|++++|||.|+...+.+..+++.++++..+++|+++||++
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~  162 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT  162 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred             HHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCC
Confidence            99999999999999999999999999988765433 35688999999999998889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 027703          161 STNVEAAFEVVIREIYSNI  179 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~~~  179 (220)
                      +.|++++|++|.+.+.++.
T Consensus       163 ~~~i~e~f~~l~~~i~~k~  181 (186)
T d2f7sa1         163 GQNVEKAVETLLDLIMKRM  181 (186)
T ss_dssp             TBTHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999887643

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.6e-31  Score=191.08  Aligned_cols=165  Identities=47%  Similarity=0.834  Sum_probs=145.6

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      +.+||+++|++|||||||++++.+..+++.+.+|.+.+.....+.+++..+.+.+||++|++.+...+..+++.++++++
T Consensus         1 ~~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T d1g16a_           1 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            36899999999999999999999999999999999988888889899999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI  172 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  172 (220)
                      |||.+++.+++.+..|+..+........|++++++|.|+. .+....+++++++...+++++++||+++.|++++|++|.
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_          81 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhh-hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999888877777778899999999975 467788999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027703          173 REIYSN  178 (220)
Q Consensus       173 ~~~~~~  178 (220)
                      +.+.++
T Consensus       160 ~~i~~k  165 (166)
T d1g16a_         160 KLIQEK  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            988753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.2e-30  Score=188.03  Aligned_cols=166  Identities=41%  Similarity=0.732  Sum_probs=145.4

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      .+.+.+||+++|++|||||||++++....+...+.+|.+.......+..++..+.+.+||++|.......+..++..+++
T Consensus         2 ~~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   81 (174)
T d1wmsa_           2 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   81 (174)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccce
Confidence            46789999999999999999999999999999999998888888888889999999999999999888888999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhC----CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHC----DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-GLFFMETSALDSTNV  164 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v  164 (220)
                      +++++|.+++.+++.+..|+..+....    ....|+++||||.|+.. +.+..++++.++++. .++|+++||+++.|+
T Consensus        82 ~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI  160 (174)
T d1wmsa_          82 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNV  160 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCH
Confidence            999999999999999999988765432    34689999999999864 788999999999886 589999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          165 EAAFEVVIREIY  176 (220)
Q Consensus       165 ~~l~~~l~~~~~  176 (220)
                      +++|++|.+.+.
T Consensus       161 ~e~f~~l~~~il  172 (174)
T d1wmsa_         161 AAAFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.7e-30  Score=187.64  Aligned_cols=168  Identities=45%  Similarity=0.804  Sum_probs=151.8

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      ...+++||+++|++|||||||+++|.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..++.++++
T Consensus         3 ~~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T d1x3sa1           3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   82 (177)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             cccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            34678999999999999999999999999999999888887777888889999999999999999998899999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF  168 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  168 (220)
                      +++|||.+++.++..+..|+..+.... ....|+++++||.|.. .+.+...++..++++.++.|+++||+++.|+.++|
T Consensus        83 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f  161 (177)
T d1x3sa1          83 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999999876544 3567888999999964 47888999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          169 EVVIREIYSN  178 (220)
Q Consensus       169 ~~l~~~~~~~  178 (220)
                      ++|++.+.+.
T Consensus       162 ~~l~~~l~~~  171 (177)
T d1x3sa1         162 EELVEKIIQT  171 (177)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHccC
Confidence            9999887653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5e-30  Score=186.46  Aligned_cols=159  Identities=45%  Similarity=0.783  Sum_probs=142.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-hhHHhhcCCcEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-VTSAYYRGAVGALV   92 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~i~   92 (220)
                      .+||+++|++|||||||++++.+..++..+.++.+.........+.+....+.+||++|...... .+..++++++++++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            68999999999999999999999999999999988887778888888889999999999776544 46678899999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCC---CCCHHHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALD---STNVEAAF  168 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~l~  168 (220)
                      |||.+++.+|+.+..|+.++.... ..+.|++++|||+|+...+.++.+++.+++++.+++|+++||++   +.|++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence            999999999999999999876654 46789999999999998889999999999999999999999987   55999999


Q ss_pred             HHHH
Q 027703          169 EVVI  172 (220)
Q Consensus       169 ~~l~  172 (220)
                      ++|+
T Consensus       162 ~~lA  165 (165)
T d1z06a1         162 MTLA  165 (165)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.7e-30  Score=189.33  Aligned_cols=162  Identities=29%  Similarity=0.395  Sum_probs=141.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..|+..+.+|.+.. .......++..+.+.+||++|+.++...+..++++++++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            5899999999999999999999999999999998744 345666788889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhC-CeEEEeccCC
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEG-LFFMETSALD  160 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  160 (220)
                      ||++++.+|+.+..|+...........|++++|||.|+..            .+.+..+++.+++++.+ +.|+++||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9999999999998876665444455799999999999853            34588899999999864 7899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREIY  176 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~  176 (220)
                      +.|++++|+.+.+.+.
T Consensus       162 ~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         162 QKGLKNVFDEAILAAL  177 (191)
T ss_dssp             CTTHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999998887653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-29  Score=185.44  Aligned_cols=164  Identities=29%  Similarity=0.378  Sum_probs=138.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCC-CcccceeeeeEEEEEeCCeEEEEEEEecCCcchh-hhhhHHhhcCCcEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSN-SKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF-RAVTSAYYRGAVGAL   91 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~-~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~-~~~~~~~~~~~~~~i   91 (220)
                      -|||+++|++|||||||++++.+..+... ..++.+.+.....+.+++..+.+.+||+++.... ......+++.+++++
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~i   82 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL   82 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccccccccccccceee
Confidence            48999999999999999999998876543 3455556667778888999999999998754321 224556789999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV  170 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  170 (220)
                      +|||++++.++..+..|+..+.... ..++|++++|||+|+...+.+..+++++++...+++|+++||+++.|++++|+.
T Consensus        83 lvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~  162 (172)
T d2g3ya1          83 IVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEG  162 (172)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             eeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHH
Confidence            9999999999999999998876543 457999999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027703          171 VIREIYS  177 (220)
Q Consensus       171 l~~~~~~  177 (220)
                      |++.+..
T Consensus       163 l~~~i~~  169 (172)
T d2g3ya1         163 IVRQVRL  169 (172)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.7e-30  Score=186.63  Aligned_cols=166  Identities=38%  Similarity=0.685  Sum_probs=130.3

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      +.+||+++|++|||||||++++.+..+.+.+.++.+........... ...+.+.+||++|+..+...+..+++.+++++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            36899999999999999999999999999988887766665555443 44567899999999988888889999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhC----CCCCcEEEEEecCCCCCC-CCCCHHHHHHHHHHhC-CeEEEeccCCCCCHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHC----DTAVGRMLVGNKCDLDSI-RDVSTEEGKSLAEEEG-LFFMETSALDSTNVE  165 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~v~~k~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  165 (220)
                      ++||.+++.+|+.+..|+.++....    .+..|++++|||+|+... +.+..+++++++...+ ++|+++||+++.|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Confidence            9999999999999999998865432    246899999999998754 4477888999998875 789999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027703          166 AAFEVVIREIYSN  178 (220)
Q Consensus       166 ~l~~~l~~~~~~~  178 (220)
                      ++|++|.+.+.++
T Consensus       161 e~f~~l~~~~l~~  173 (175)
T d1ky3a_         161 TAFEEIARSALQQ  173 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-29  Score=186.68  Aligned_cols=164  Identities=29%  Similarity=0.458  Sum_probs=140.7

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      +..+||+|+|++|||||||++++....|...+.+|++. .....+..++..+.+.+||++|+..+...+..+++.+++++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceee-ceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            45699999999999999999999999999999998864 34466778899999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhC-CeEEEecc
Q 027703           92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEG-LFFMETSA  158 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa  158 (220)
                      +|||+++..+|+.+..|+...........|++++|||+|+..            .+.....++..++++.+ +.|++|||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            999999999999998765554433445689999999999743            23456677888888876 78999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 027703          159 LDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~~~  176 (220)
                      +++.|++++|+.|.+.+.
T Consensus       162 k~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCCcCHHHHHHHHHHHHc
Confidence            999999999999987653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.1e-29  Score=187.15  Aligned_cols=163  Identities=31%  Similarity=0.459  Sum_probs=141.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++....|+..+.+|.+. .....+..++..+.+.+||++|++.+...+..+++.++++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            489999999999999999999999999999988753 3445667788999999999999999888888999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhC-CeEEEeccCC
Q 027703           94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEG-LFFMETSALD  160 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  160 (220)
                      ||++++.+|+.+..|+.........+.|+++||||.|+..            .+.++.+++..++++.+ ..|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999998877665444455789999999999853            35688899999999987 4899999999


Q ss_pred             CCC-HHHHHHHHHHHHHH
Q 027703          161 STN-VEAAFEVVIREIYS  177 (220)
Q Consensus       161 ~~~-v~~l~~~l~~~~~~  177 (220)
                      +.+ ++++|+.+.+.+.+
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            985 99999999887653

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=3.2e-29  Score=185.37  Aligned_cols=165  Identities=36%  Similarity=0.678  Sum_probs=145.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|.+|||||||++++.+..|...+.+|.+.+.....+...+..+.+.+||++|.......+..++..+++++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            58999999999999999999999999999999998888888888888899999999999998888888999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhC----CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-hCCeEEEeccCCCCCHHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTHC----DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAF  168 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~l~  168 (220)
                      +|.++..++..+..|+..+....    ....|++++|||+|+.. +....+++..+... ..+++++|||+++.|+.++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            99999999999999998865432    24579999999999875 55667777677655 57899999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027703          169 EVVIREIYSNI  179 (220)
Q Consensus       169 ~~l~~~~~~~~  179 (220)
                      ++|.+.+.++.
T Consensus       161 ~~l~~~i~~~~  171 (184)
T d1vg8a_         161 QTIARNALKQE  171 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            99988876643

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3e-27  Score=173.27  Aligned_cols=158  Identities=23%  Similarity=0.336  Sum_probs=131.6

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      |.+||+++|++|||||||++++.+..|+... ++.. ......+.+++..+.+.+||++|+..+     .+++.+|++++
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~-~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCCC-CSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCcC-Cccc-eeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            5799999999999999999999999986543 4433 334567788999999999999998753     46788999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCC--CCCCCCHHHHHHHHHH-hCCeEEEeccCCCCCHHH
Q 027703           93 VYDITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLD--SIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEA  166 (220)
Q Consensus        93 v~d~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~  166 (220)
                      |||++++.+|+.+..|+..+....   ....|+++|++|.|+.  ..+.+..+++..+..+ ..+.|+++||+++.|+.+
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            999999999999999988875443   3567999999998874  4566778888888766 467999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          167 AFEVVIREIYS  177 (220)
Q Consensus       167 l~~~l~~~~~~  177 (220)
                      +|..+++.+..
T Consensus       157 ~F~~l~~~i~~  167 (175)
T d2bmja1         157 VFQEVAQKVVT  167 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.95  E-value=9.1e-28  Score=174.29  Aligned_cols=155  Identities=21%  Similarity=0.387  Sum_probs=126.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||+++|.+..+...+.+|.+....  .+...  .+.+.+||++|+..+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeee--eEEEEEeeccccccccccccccccccchhhcc
Confidence            489999999999999999999999999988888776443  34444  47889999999999998999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHhCCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-----EEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      ||+++..++.....|+..+... .....|+++++||+|+....  ...+.....     ....+.++++||+++.|++++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            9999999999998888776543 34668999999999986533  333322222     233557899999999999999


Q ss_pred             HHHHHHH
Q 027703          168 FEVVIRE  174 (220)
Q Consensus       168 ~~~l~~~  174 (220)
                      |+||.+.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999874

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.94  E-value=4.8e-27  Score=172.19  Aligned_cols=160  Identities=23%  Similarity=0.318  Sum_probs=123.0

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   87 (220)
                      +..++..+||+++|++|||||||+++|.+..+.... ++.+.  ....+...  .+.+.+||++|...+...+..++..+
T Consensus        10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~--~~~~i~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~   84 (176)
T d1fzqa_          10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGF--NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENT   84 (176)
T ss_dssp             SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTE--EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred             hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeee--eEEEeccC--CeeEeEeeccccccchhHHHHHhhcc
Confidence            444556699999999999999999999998775433 22222  23334443  37889999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHH-----HHHhCCeEEEeccCCC
Q 027703           88 VGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSL-----AEEEGLFFMETSALDS  161 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~  161 (220)
                      +++++|||+++..++..+..|+..+.... ....|+++++||+|+....  ...+....     +....+.++++||++|
T Consensus        85 ~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  162 (176)
T d1fzqa_          85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTG  162 (176)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             ceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc--cHHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            99999999999999999988887755433 3568999999999987533  33322222     2233557889999999


Q ss_pred             CCHHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIRE  174 (220)
Q Consensus       162 ~~v~~l~~~l~~~  174 (220)
                      .|++++|+||.+.
T Consensus       163 ~gv~e~~~~l~~~  175 (176)
T d1fzqa_         163 EGVQDGMNWVCKN  175 (176)
T ss_dssp             TTHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999999863

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.94  E-value=1.9e-26  Score=167.35  Aligned_cols=156  Identities=21%  Similarity=0.361  Sum_probs=122.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||+++|.+..+. ...+|.+...  ..+...  .+.+.+||++|+..+...+..++..+++++++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeee--eecccc--ccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            479999999999999999999988764 4556655433  334444  47889999999998888889999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHh-hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTT-HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +|.++..++.....++..... ......|+++++||+|+....  ..++......     ..++.++++||+++.|+.++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc--CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            999999999998887766443 334568999999999987533  4444333322     22457899999999999999


Q ss_pred             HHHHHHHHH
Q 027703          168 FEVVIREIY  176 (220)
Q Consensus       168 ~~~l~~~~~  176 (220)
                      |+||.+.+.
T Consensus       155 ~~~l~~~i~  163 (165)
T d1ksha_         155 IDWLLDDIS  163 (165)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988765

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.94  E-value=2e-26  Score=169.90  Aligned_cols=159  Identities=19%  Similarity=0.339  Sum_probs=120.2

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   91 (220)
                      ...+||+++|++|||||||+++|.+..++... +|.+...  ..+...  .+.+.+||++|+..+...+..++..+++++
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   89 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI   89 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-SSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccceEE--EEEeeC--CEEEEEEecccccccchhHHhhhccceeEE
Confidence            34699999999999999999999888765432 4443322  233333  478899999999998889999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHh-hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHhCCeEEEeccCCCCCHH
Q 027703           92 VVYDITRRSSFDSVKRWLEELTT-HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-----EEEGLFFMETSALDSTNVE  165 (220)
Q Consensus        92 ~v~d~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~  165 (220)
                      +|+|.++..++.....|+..... ......|+++++||+|+..  .....+.....     .+.++.++++||+++.|+.
T Consensus        90 ~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~  167 (182)
T d1moza_          90 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  167 (182)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT--CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc--ccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHH
Confidence            99999999999998888776433 3345689999999999865  33444433322     2334678999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          166 AAFEVVIREIYS  177 (220)
Q Consensus       166 ~l~~~l~~~~~~  177 (220)
                      ++|++|.+.+.+
T Consensus       168 e~~~~l~~~i~~  179 (182)
T d1moza_         168 EGLDWLIDVIKE  179 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998876

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.93  E-value=4.7e-26  Score=166.53  Aligned_cols=154  Identities=21%  Similarity=0.376  Sum_probs=119.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..++... +|.+..  ......  ..+.+.+||++|...+...+..+++.++++++|
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~~~~--~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   86 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFN--VETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   86 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EETTEE--EEEEEE--TTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCcc-ceeeee--EEEeec--cceeeEEecCCCcchhhhHHHhhhcccceEEEE
Confidence            489999999999999999999988765432 333322  222323  347889999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHh-hCCCCCcEEEEEecCCCCCCCCCCHHHHHHH-----HHHhCCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTT-HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSL-----AEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +|.++..++..+..|+..... ......|+++++||+|+..+  ....+....     +.+.++.++++||++++|+.++
T Consensus        87 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~  164 (173)
T d1e0sa_          87 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG  164 (173)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence            999999999999888877543 33457899999999998753  233332222     2223567899999999999999


Q ss_pred             HHHHHHH
Q 027703          168 FEVVIRE  174 (220)
Q Consensus       168 ~~~l~~~  174 (220)
                      |+||.+.
T Consensus       165 ~~~l~~~  171 (173)
T d1e0sa_         165 LTWLTSN  171 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.1e-27  Score=179.55  Aligned_cols=181  Identities=17%  Similarity=0.126  Sum_probs=109.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE------EEEecCCcchhhhhhHHhhcCCcE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA------QIWDTAGQERFRAVTSAYYRGAVG   89 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~------~~~d~~g~~~~~~~~~~~~~~~~~   89 (220)
                      -++++||||||||||++.|.+..           .+..|.+.++|..+.-      .+--+++.+. .........+...
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~-----------~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~-l~~~~tv~eni~~   95 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE-----------TITSGDLFIGEKRMNDTPPAERGVGMVFQSYA-LYPHLSVAENMSF   95 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS-----------CCSEEEEEESSSCCTTSCGGGTCEEEECSSCC-C------------
T ss_pred             EEEEECCCCChHHHHHHHHhcCC-----------CCCCCEEEECCEECCCCchhhceeeeeccccc-cccchhHHHHHHH
Confidence            37999999999999999999994           3357788787754310      0000111100 0000011111111


Q ss_pred             EEEEEeCCCcccHHHHHHHHHH--HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHH
Q 027703           90 ALVVYDITRRSSFDSVKRWLEE--LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVE  165 (220)
Q Consensus        90 ~i~v~d~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~  165 (220)
                      ..........+..+.+.++++.  +....+..+.-++.|+|+.++.++        +++.+|++.++|  ||++|+....
T Consensus        96 ~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAr--------aL~~~P~illlDEPts~LD~~~~~  167 (232)
T d2awna2          96 GLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGR--------TLVAEPSVFLLDEPLSNLDAALRV  167 (232)
T ss_dssp             ---------CHHHHHHHHHHHHC---------------------CHHH--------HHHTCCSEEEEESTTTTSCHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHH--------HHhcCCCEEEEcCCCCCCCHHHHH
Confidence            1111122222233445555554  233333445557888888876655        999999999999  9999999999


Q ss_pred             HHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          166 AAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       166 ~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ++++.+.++..+ +.|++++|||++++..+|||+++|++|+++++|+++++.
T Consensus       168 ~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~  219 (232)
T d2awna2         168 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY  219 (232)
T ss_dssp             HHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence            999999999877 899999999999999999999999999999999998864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.92  E-value=8.5e-26  Score=162.46  Aligned_cols=153  Identities=18%  Similarity=0.297  Sum_probs=121.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY   94 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   94 (220)
                      +||+++|++|||||||+++|.+.++...+..+..     .....+...+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            5899999999999999999999988776554432     22234456688999999999988888999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHH-----HHHHHhCCeEEEeccCCCCCHHHHH
Q 027703           95 DITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGK-----SLAEEEGLFFMETSALDSTNVEAAF  168 (220)
Q Consensus        95 d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~v~~l~  168 (220)
                      |.++..++..+..|+.++... .....|++++++|.|+....  ...+..     .++...+++++++||++|.|++++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc--cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            999999999998888776543 34668999999999987533  233322     2333346689999999999999999


Q ss_pred             HHHHHH
Q 027703          169 EVVIRE  174 (220)
Q Consensus       169 ~~l~~~  174 (220)
                      ++|.+.
T Consensus       154 ~~l~~~  159 (160)
T d1r8sa_         154 DWLSNQ  159 (160)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            999875

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=3.1e-27  Score=179.21  Aligned_cols=177  Identities=16%  Similarity=0.114  Sum_probs=117.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEE----------EEEEEecCCcchhhhhhHHhhc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEV----------KAQIWDTAGQERFRAVTSAYYR   85 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~----------~~~~~d~~g~~~~~~~~~~~~~   85 (220)
                      -++++||||||||||++.|.+..           .+..|.+.++|..+          .+.+-+ +..........+...
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~-----------~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~-~~l~~~ltv~enl~~  101 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE-----------EPTEGRIYFGDRDVTYLPPKDRNISMVFQS-YAVWPHMTVYENIAF  101 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS-----------CCSEEEEEETTEECTTSCGGGGTEEEEEC-------CCCHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHcCC-----------CCCCCEEEEcceecccCCcccceEEEEeec-hhhcccchHHHHHHH
Confidence            37999999999999999999994           33567787877543          111111 111111111111111


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCC
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDS  161 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~  161 (220)
                      ...    ....+..+..+.+.++++.+.  ...+..+.-        |+....+....|++++.+|++.++|  ||++|+
T Consensus       102 ~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~  169 (239)
T d1v43a3         102 PLK----IKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ--------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA  169 (239)
T ss_dssp             TCC------CCCHHHHHHHHHHHHHHTTCGGGTTSCTTT--------CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred             HHH----HcCCCHHHHHHHHHHHHHHcCChhhhcCChhh--------CCHHHHHHHHHHhhhccCCCceeecCCcccCCH
Confidence            110    111111122223333444322  222233322        3333344455677999999999999  999999


Q ss_pred             CCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          162 TNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       162 ~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ....++++.+.++..+ +.|++++|||++++..+|||+++|++|+|+++|+++++.
T Consensus       170 ~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~  225 (239)
T d1v43a3         170 KLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY  225 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999999876 999999999999999999999999999999999998863

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.3e-26  Score=175.99  Aligned_cols=177  Identities=16%  Similarity=0.180  Sum_probs=116.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhH---HhhcCCcEE--
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTS---AYYRGAVGA--   90 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~---~~~~~~~~~--   90 (220)
                      -++++|+||||||||++.|.+..           ++..|.+.++|..+.    ..+.. .......   ..+++...+  
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~-----------~p~sG~I~~~g~~i~----~~~~~-~~~~~rr~ig~VfQ~~~l~~~   96 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE-----------RPTEGSVLVDGQELT----TLSES-ELTKARRQIGMIFQHFNLLSS   96 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS-----------CCSEEEEEETTEEEC----TTCHH-HHHHHHHHEEECCSSCCCCTT
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc-----------cccCCceEEcCeEee----eCChh-hhhhhhccccccccccccCCC
Confidence            37999999999999999999984           346788888886541    11100 0000000   011111000  


Q ss_pred             ----------EEEEeCCCcccHHHHHHHHHHHHh--hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--e
Q 027703           91 ----------LVVYDITRRSSFDSVKRWLEELTT--HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--T  156 (220)
Q Consensus        91 ----------i~v~d~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~  156 (220)
                                +........+..+.+.++++.+..  ..+..+.-++.|+|+        .+..|++++.+|++.++|  |
T Consensus        97 ~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~Q--------RvaiAraL~~~P~lLllDEPt  168 (240)
T d3dhwc1          97 RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQ--------RVAIARALASNPKVLLCDEAT  168 (240)
T ss_dssp             SBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHH--------HHHHHHHHHTCCSEEEEESGG
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH--------HHHHhhhhccCCCeEEecccc
Confidence                      000001111222334444444321  111112112222222        234488999999999999  9


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          157 SALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      |++|+....++++.|.++..+ +.+++++|||+.++..+|||+++|++|+|+++|+++++.
T Consensus       169 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~  229 (240)
T d3dhwc1         169 SALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF  229 (240)
T ss_dssp             GSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred             ccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999999999999999877 899999999999999999999999999999999999873

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.90  E-value=1.9e-27  Score=180.61  Aligned_cols=78  Identities=15%  Similarity=0.197  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.+|++.++|  |+++|+....++++.+.++..+ +.+++++|||++++..+|||+++|++|++++.|+++++
T Consensus       148 v~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el  227 (240)
T d1g2912         148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV  227 (240)
T ss_dssp             HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            34477999999999999  9999999999999999999877 99999999999999999999999999999999999886


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       228 ~  228 (240)
T d1g2912         228 Y  228 (240)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.90  E-value=3e-26  Score=173.82  Aligned_cols=177  Identities=14%  Similarity=0.104  Sum_probs=115.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE---------------EEEecCCcchhhhhh
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA---------------QIWDTAGQERFRAVT   80 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~---------------~~~d~~g~~~~~~~~   80 (220)
                      .++++||||||||||++.|.+...           +..|.+.+++..+.-               .+-+ +...+.....
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~~-----------p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~-~~L~p~ltv~  100 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLDV-----------PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT-WALYPNLTAF  100 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC-----------CSEEEEEETTEEEEETTEESSCGGGSCEEEEETT-SCCCTTSCHH
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcC-----------CCCceEEECCEEeecCchhhcchhhccceEEecc-ccccccccHH
Confidence            489999999999999999999843           356777777765421               1100 0000111111


Q ss_pred             HHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--e
Q 027703           81 SAYYRGAVGALVVYDITRRSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--T  156 (220)
Q Consensus        81 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~  156 (220)
                      .+......    ....+..+..+.+.++++.+.  ...+..+.-++.|.|+.        ...|++++.+|++.++|  |
T Consensus       101 eni~~~l~----~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQR--------vaiARaL~~~P~llllDEPt  168 (242)
T d1oxxk2         101 ENIAFPLT----NMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQR--------VALARALVKDPSLLLLDEPF  168 (242)
T ss_dssp             HHHHGGGT----TSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHH--------HHHHHHHTTCCSEEEEESTT
T ss_pred             HHhhhhhH----hhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhH--------HHHHhHHhhcccceeecCCc
Confidence            11111000    001111112222333333321  11122222222233322        34477999999999999  9


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          157 SALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       157 Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      |++|+....++++.+.++..+ +.|++++|||++++..+|||+++|++|+|++.|+++++.
T Consensus       169 ~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~  229 (242)
T d1oxxk2         169 SNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY  229 (242)
T ss_dssp             TTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999999999999998776 899999999999999999999999999999999998864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.89  E-value=1.8e-26  Score=174.72  Aligned_cols=77  Identities=16%  Similarity=0.217  Sum_probs=72.2

Q ss_pred             HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ..|++++.+|++.++|  ||++|+....++++.+.++..+ +.+++++||+++++..+|||+++|++|++++.|+++++.
T Consensus       136 aiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~  215 (240)
T d2onka1         136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHh
Confidence            3478999999999999  9999999999999999999876 899999999999999999999999999999999998763

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.89  E-value=3.3e-26  Score=172.41  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.+|++.++|  ||++|+....++++.+.++..+ +.+++++|||++++..+|||+++|++|+++++|+++++
T Consensus       136 vaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el  215 (229)
T d3d31a2         136 VALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI  215 (229)
T ss_dssp             HHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred             hhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            33488999999999999  9999999999999999998876 89999999999999999999999999999999999886


Q ss_pred             c
Q 027703          216 S  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       216 ~  216 (229)
T d3d31a2         216 F  216 (229)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.89  E-value=2.5e-25  Score=169.78  Aligned_cols=175  Identities=17%  Similarity=0.183  Sum_probs=114.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEE-----------EEE-EecCCcchhhhhhHHhh
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVK-----------AQI-WDTAGQERFRAVTSAYY   84 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~-----------~~~-~d~~g~~~~~~~~~~~~   84 (220)
                      ++++||||||||||++.|.|..           ++..|.+.++|..+.           +.+ ..............+..
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~-----------~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~  103 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLV-----------RAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLM  103 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHhCCC-----------CCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHH
Confidence            7999999999999999999994           446788888885431           000 00000111111111111


Q ss_pred             cCCcEEEEEEeCCCccc-HHHHHHHHHH---HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703           85 RGAVGALVVYDITRRSS-FDSVKRWLEE---LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA  158 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~~~-~~~~~~~~~~---l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa  158 (220)
                      ..+.      ...+... .+.+...+..   +....+..+.-++.|+|        +....|++++.+|++.++|  |++
T Consensus       104 ~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~--------Qrv~iAraL~~~P~lLllDEPt~g  169 (240)
T d1ji0a_         104 MGAY------NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQ--------QMLAIGRALMSRPKLLMMDEPSLG  169 (240)
T ss_dssp             GGGT------TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHH--------HHHHHHHHHTTCCSEEEEECTTTT
T ss_pred             HHHH------hcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHH--------HHHHHHHHHHhCCCEeeecCCCcC
Confidence            1010      0011111 1122222222   22222222222233333        3344477999999999999  999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          159 LDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      +|+....++++.+.++..++.+++++||+++++..+|||+++|++|+++.+|+++++.
T Consensus       170 LD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~  227 (240)
T d1ji0a_         170 LAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            9999999999999988777999999999999999999999999999999999998864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.89  E-value=7.3e-22  Score=144.16  Aligned_cols=155  Identities=23%  Similarity=0.374  Sum_probs=113.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|.+|||||||+++|.+..+..... +.+.  ........  .+.+.+||+++.......+..++..+++++++
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~-~~~~--~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v   89 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGS--NVEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   89 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-CSCS--SCEEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCcccc-ccce--eEEEEeec--ceEEEEeccccccccccchhhhhccceeeeee
Confidence            3899999999999999999999987654332 2221  22233333  36788999999988888888999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHhCCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-----EEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +|.++..++.....+....... .....|+++++||+|+....  ...+.....     ...++.++++||++|+|++++
T Consensus        90 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~  167 (177)
T d1zj6a1          90 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG  167 (177)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             cccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC--cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHH
Confidence            9999999998877665554333 33678999999999986533  333332322     223567999999999999999


Q ss_pred             HHHHHHHH
Q 027703          168 FEVVIREI  175 (220)
Q Consensus       168 ~~~l~~~~  175 (220)
                      +++|.+.+
T Consensus       168 ~~~L~~~l  175 (177)
T d1zj6a1         168 LEWMMSRL  175 (177)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999765

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.3e-21  Score=139.24  Aligned_cols=151  Identities=21%  Similarity=0.282  Sum_probs=115.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD   95 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d   95 (220)
                      ||+++|++|||||||+++|.+..+.. ..+|.+.  ......+  ..+...+||+.+...+...+..+...++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHP--TSEELAI--GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSC--EEEEECC--TTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeE--eEEEecc--CCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999998764 3444433  2233333  33577889999998888888899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH------------HhCCeEEEeccCCCC
Q 027703           96 ITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE------------EEGLFFMETSALDST  162 (220)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~  162 (220)
                      .++..++.....++....... ..+.|++++++|.|+..  .....+......            ...+.++++||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS--CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc--cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            999999988888777655433 46688999999999864  334444333221            123468899999999


Q ss_pred             CHHHHHHHHHH
Q 027703          163 NVEAAFEVVIR  173 (220)
Q Consensus       163 ~v~~l~~~l~~  173 (220)
                      |++++|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999865

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.88  E-value=2e-25  Score=171.91  Aligned_cols=77  Identities=12%  Similarity=0.147  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF  215 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~  215 (220)
                      ...|++++.+|++.++|  |+++|+....++++.|.++..++.+++++||+++++..+||||++|++|+++.+|+++|+
T Consensus       159 v~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~  237 (254)
T d1g6ha_         159 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE  237 (254)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHH
T ss_pred             HHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHH
Confidence            34477999999999999  999999999999999999877799999999999999999999999999999999999874

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.88  E-value=2.3e-21  Score=139.96  Aligned_cols=157  Identities=22%  Similarity=0.325  Sum_probs=119.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.+..+.... ++.+.  ........  .+.+.+|+.++...........+...++.+++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGF--NVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSE--EEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccee-cccce--eeeeeccC--ceEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            489999999999999999999999887543 33332  22233333  36778899999988888888889999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHH-hhCCCCCcEEEEEecCCCCCCCCCCHHHHH-----HHHHHhCCeEEEeccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWLEELT-THCDTAVGRMLVGNKCDLDSIRDVSTEEGK-----SLAEEEGLFFMETSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~v~~l  167 (220)
                      +|+.+..++.....++.... .......|+++++||.|+....  ...+..     .++...+++|+++||+++.|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccc--cHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            99999888888877655543 3334567888999999987532  222222     223344678999999999999999


Q ss_pred             HHHHHHHHHH
Q 027703          168 FEVVIREIYS  177 (220)
Q Consensus       168 ~~~l~~~~~~  177 (220)
                      |++|.+.+.+
T Consensus       158 ~~~l~~~l~~  167 (169)
T d1upta_         158 MEWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999887754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.87  E-value=6.5e-26  Score=174.61  Aligned_cols=78  Identities=18%  Similarity=0.202  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      +..|++++.+|++.++|  |+++|+....++++.+.++..++.+++++|||++++..+|||++||++|+|+++|+++++.
T Consensus       158 v~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~  237 (258)
T d1b0ua_         158 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF  237 (258)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            33477999999999999  9999999999999999988777899999999999999999999999999999999998863

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.4e-21  Score=144.64  Aligned_cols=155  Identities=19%  Similarity=0.220  Sum_probs=113.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|..|||||||++++....++..+..       ...+..  ..+.+.+||++|+..+...+..+++.+++++++
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~-------~~~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV-------ETHFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCSEE-------EEEEEE--TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCccEE-------EEEEEe--eeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            58999999999999999999998888765432       222333  447889999999999999999999999999999


Q ss_pred             EeCCCcccHHH-----------HHHHHHHHHhhCCCCCcEEEEEecCCCCCC---------------CCCCHHHHHHHHH
Q 027703           94 YDITRRSSFDS-----------VKRWLEELTTHCDTAVGRMLVGNKCDLDSI---------------RDVSTEEGKSLAE  147 (220)
Q Consensus        94 ~d~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~---------------~~~~~~~~~~~~~  147 (220)
                      +|.++..++..           ...|...+........|+++++||+|+...               ......++.....
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            99988776532           223333344444567899999999985211               1122222222111


Q ss_pred             ----H-------hCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          148 ----E-------EGLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       148 ----~-------~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                          +       .++.+++|||+++.|++++|+.+.+.+.+
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence                1       13456789999999999999999887764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=9.9e-26  Score=171.73  Aligned_cols=78  Identities=17%  Similarity=0.287  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ...|++++.+|++.++|  |+++|+....++++.+.++..++++++++||+++++..+|||+++|++|+++.+|+++++.
T Consensus       142 v~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~  221 (238)
T d1vpla_         142 LLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK  221 (238)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            44477999999999999  9999999999999999988878999999999999999999999999999999999999874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.87  E-value=1.5e-24  Score=163.62  Aligned_cols=73  Identities=21%  Similarity=0.243  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM  212 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~  212 (220)
                      +..|++++.+|++.++|  ||++|+.+..++++.+.++..+ +.|++++|||++++ .+|||+++|++|+|+++|++
T Consensus       154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred             HHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEeccC
Confidence            44488999999999999  9999999999999999998876 89999999999988 59999999999999999875

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.7e-22  Score=150.13  Aligned_cols=158  Identities=18%  Similarity=0.176  Sum_probs=120.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|..|||||||++++....|.  +.||++.....    +....+.+.+||++|+..+...+..+++.+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEE----EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEE----EeccceeeeeccccccccccccccccccccceeeEe
Confidence            489999999999999999999988874  56888765433    333457888999999999999999999999999999


Q ss_pred             EeCCCcc-----------cHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCC----------------CCCHHHHHHHH
Q 027703           94 YDITRRS-----------SFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR----------------DVSTEEGKSLA  146 (220)
Q Consensus        94 ~d~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~----------------~~~~~~~~~~~  146 (220)
                      +|.++..           .++....|...+........|+++++||+|+...+                ......+..+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9987754           34445556555665556778999999999974211                12233333433


Q ss_pred             HH----------hCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          147 EE----------EGLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       147 ~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      ..          ..+.+++|||+|+.|++++|+.+.+.+.+
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            22          23457789999999999999999888765

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.85  E-value=4.1e-23  Score=157.62  Aligned_cols=76  Identities=9%  Similarity=0.204  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ...|++++.+|++.++|  ||++|..+..++++.+.++. ++.|++++||+++.+. .||||++|++|+|+++|+++++.
T Consensus       148 v~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~~G~~~eLl  225 (242)
T d1mv5a_         148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELV  225 (242)
T ss_dssp             HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHH
T ss_pred             HHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            34488999999999999  99999999999999887764 5899999999999886 59999999999999999998863

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.5e-21  Score=139.22  Aligned_cols=150  Identities=23%  Similarity=0.259  Sum_probs=108.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCC-CcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh--------hhhHHhhc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSN-SKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR--------AVTSAYYR   85 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~-~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~   85 (220)
                      +||+++|++|||||||+|+|++...... ..++.+.......+...+  ..+.+||++|.....        .....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            7999999999999999999998875532 233333444445555555  467789999954221        12334578


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE  165 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (220)
                      .++.+++++|..+..++.....|...+... ....|+++++||+|+.....       .+....+.+++.+||+++.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~-------~~~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHH-------HHHHhCCCcEEEEECCCCCCHH
Confidence            899999999999888877766554444443 44689999999999854321       1112245688999999999999


Q ss_pred             HHHHHHHHH
Q 027703          166 AAFEVVIRE  174 (220)
Q Consensus       166 ~l~~~l~~~  174 (220)
                      +++++|.+.
T Consensus       152 ~L~~~l~~~  160 (161)
T d2gj8a1         152 VLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=4.6e-20  Score=134.87  Aligned_cols=155  Identities=19%  Similarity=0.106  Sum_probs=103.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcchh--------hhhhHHhh
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF--------RAVTSAYY   84 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~--------~~~~~~~~   84 (220)
                      --+|+++|.+|||||||+|+|++........ +..+...........+  ..+.+||++|....        .......+
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccccc
Confidence            3469999999999999999999986543322 2223333344444444  57788999997432        22233456


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-CCeEEEeccCCCCC
Q 027703           85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-GLFFMETSALDSTN  163 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~  163 (220)
                      ..+|++++|+|+++...... ..+...+.. ...+.|+++++||+|+....   .+....+.... ...++.+||+++.|
T Consensus        83 ~~ad~il~v~D~~~~~~~~~-~~i~~~l~~-~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~g  157 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPED-ELVARALKP-LVGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDERQ  157 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHHH-HHHHHHHGG-GTTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHHH
T ss_pred             ccccceeeeechhhhhcccc-cchhhheec-cccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCCC
Confidence            78999999999988655443 223333433 34458999999999985422   22223333333 35788899999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          164 VEAAFEVVIREI  175 (220)
Q Consensus       164 v~~l~~~l~~~~  175 (220)
                      +++++++|.+.+
T Consensus       158 i~~L~~~i~~~l  169 (178)
T d1wf3a1         158 VAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhC
Confidence            999999998654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=8.4e-24  Score=160.67  Aligned_cols=76  Identities=13%  Similarity=0.139  Sum_probs=69.5

Q ss_pred             HHHHHHH-------HhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCC
Q 027703          141 EGKSLAE-------EEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS  211 (220)
Q Consensus       141 ~~~~~~~-------~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~  211 (220)
                      .|+++++       +|++.++|  +|++|+.....+.+.+.++..++.+++++||+++++..+|||+++|++|+++++|+
T Consensus       136 iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~  215 (231)
T d1l7vc_         136 LAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR  215 (231)
T ss_dssp             HHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSB
T ss_pred             HHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECC
Confidence            3778877       55789999  99999999999999999888889999999999999999999999999999999999


Q ss_pred             Ccccc
Q 027703          212 MMDFS  216 (220)
Q Consensus       212 ~~~~~  216 (220)
                      ++++.
T Consensus       216 ~~ev~  220 (231)
T d1l7vc_         216 REEVL  220 (231)
T ss_dssp             HHHHS
T ss_pred             HHHHh
Confidence            98874

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.84  E-value=4.2e-20  Score=135.24  Aligned_cols=154  Identities=21%  Similarity=0.265  Sum_probs=109.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      ..||+++|++|||||||+++|.+..+.... ++.+..  ...+.+.+  ....+|++.+.......+..+....++++++
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFL   87 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccc--eeEEEecc--cccccccccchhhhhhHHhhhhcccceeeee
Confidence            489999999999999999999998876543 332222  23344444  4667899999888888888889999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHh-hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----------------hCCeEEE
Q 027703           94 YDITRRSSFDSVKRWLEELTT-HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----------------EGLFFME  155 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~  155 (220)
                      +|.++...+.....++..... ......|+++++||.|+..  .....+.......                 .++.+++
T Consensus        88 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (186)
T d1f6ba_          88 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM  165 (186)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred             eeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEE
Confidence            999999888887766555443 3346689999999999865  3344444333321                 1346889


Q ss_pred             eccCCCCCHHHHHHHHHHH
Q 027703          156 TSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus       156 ~Sa~~~~~v~~l~~~l~~~  174 (220)
                      +||++|+|++++|+||.+.
T Consensus       166 ~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         166 CSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             CBTTTTBSHHHHHHHHHTT
T ss_pred             EeCCCCCCHHHHHHHHHHh
Confidence            9999999999999999865

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=9.6e-21  Score=140.76  Aligned_cols=157  Identities=22%  Similarity=0.250  Sum_probs=108.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   93 (220)
                      .+||+++|++|||||||++++.   +...+.||+|...  ..+.+  ..+.+.+||++|+..+...+..+++.+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~--~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEI--KNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEE--TTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEee--eeeeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999993   5566778887643  33444  347889999999999999999999999999999


Q ss_pred             EeCCCccc----------HHHHHHHHHHHH-hhCCCCCcEEEEEecCCCCCC----------------CCCCHHHHHHHH
Q 027703           94 YDITRRSS----------FDSVKRWLEELT-THCDTAVGRMLVGNKCDLDSI----------------RDVSTEEGKSLA  146 (220)
Q Consensus        94 ~d~~~~~~----------~~~~~~~~~~l~-~~~~~~~~~~~v~~k~Dl~~~----------------~~~~~~~~~~~~  146 (220)
                      ++.++..+          +.....++..+. .....+.|+++++||+|+...                ..-..+.+..+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            99987543          334444444433 233467899999999997421                011223344433


Q ss_pred             HHh-----------CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          147 EEE-----------GLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       147 ~~~-----------~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      .+.           .+.++.|||+|+.|++++|+.+.+.+.+
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            321           3456679999999999999998887654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5e-23  Score=157.93  Aligned_cols=75  Identities=15%  Similarity=0.211  Sum_probs=68.2

Q ss_pred             HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      .|++++.++++.++|  ||++|..+..++++.|.++..+ ++|++++||+++.+. .||||++|++|+|+++|+++++.
T Consensus       162 iARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~Gt~~eLl  239 (251)
T d1jj7a_         162 LARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLM  239 (251)
T ss_dssp             HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHH
T ss_pred             EeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            388999999999999  9999999999999988887665 899999999999875 59999999999999999998863

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=7.1e-23  Score=155.98  Aligned_cols=74  Identities=12%  Similarity=0.237  Sum_probs=67.0

Q ss_pred             HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      .|+++++++++.++|  ||++|+.+..++++.+.++ .+++|++++||+++.+. .||+|++|++|+|+++|+++++.
T Consensus       150 lARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l-~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G~~~ell  225 (241)
T d2pmka1         150 IARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELL  225 (241)
T ss_dssp             HHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHH
T ss_pred             hhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            388999999999999  9999999999999988766 45789999999999875 69999999999999999999874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.83  E-value=1.2e-22  Score=156.00  Aligned_cols=74  Identities=19%  Similarity=0.284  Sum_probs=67.0

Q ss_pred             HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      .|+++++++++.++|  ||++|..+...+++.|.++. +++|++++||+++.+. +||+|++|++|+|+++|+++++.
T Consensus       163 iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G~~~eLl  238 (253)
T d3b60a1         163 IARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELL  238 (253)
T ss_dssp             HHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            388999999999999  99999999999999887764 5889999999999875 69999999999999999998864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=6.8e-20  Score=134.14  Aligned_cols=158  Identities=19%  Similarity=0.110  Sum_probs=105.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh-------hhhhHHhhcCCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF-------RAVTSAYYRGAV   88 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~-------~~~~~~~~~~~~   88 (220)
                      .|+++|.+|||||||+|+|++...........+.+...+.. .......+.+||++|....       ..........++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-eecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            59999999999999999999876544444444444333333 2323346789999995321       112334567889


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhC--CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703           89 GALVVYDITRRSSFDSVKRWLEELTTHC--DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA  166 (220)
Q Consensus        89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (220)
                      .+++++|..... ...+..+...+....  ....|+++++||+|+....  ..++....+...+.+++.+||+++.|+++
T Consensus        82 ~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEE--AVKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhccccccc-ccchhhhhhhhhccccccchhhhhhhhhhhhhhhHH--HHHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            999999986532 233333333322211  1236899999999986432  23344455566788999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027703          167 AFEVVIREIYS  177 (220)
Q Consensus       167 l~~~l~~~~~~  177 (220)
                      +++.|.+.+.+
T Consensus       159 L~~~i~~~l~~  169 (180)
T d1udxa2         159 LKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999888753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=5.5e-19  Score=128.19  Aligned_cols=154  Identities=21%  Similarity=0.213  Sum_probs=96.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcch---------hhhhhHHhhc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQER---------FRAVTSAYYR   85 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~   85 (220)
                      +|+++|++|||||||+++|++......+. +..+.......+...+  ..+.+||++|...         ........+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            69999999999999999999876543222 2222222333343333  5678899998421         1222334567


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE  165 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (220)
                      .+|.++++.+.+....... ..++..+...   ..|+++++||+|+...  ...+....+.+.....++.+||+++.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            8999999999877665544 2344444433   4689999999997531  11222223333334467889999999999


Q ss_pred             HHHHHHHHHHHH
Q 027703          166 AAFEVVIREIYS  177 (220)
Q Consensus       166 ~l~~~l~~~~~~  177 (220)
                      +++++|.+.+.+
T Consensus       154 ~L~~~i~~~l~e  165 (171)
T d1mkya1         154 TMLETIIKKLEE  165 (171)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC
Confidence            999999998765

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.81  E-value=8.2e-22  Score=151.15  Aligned_cols=76  Identities=11%  Similarity=0.173  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ...|+++++++++.++|  ||++|+.+...+++.+.++. .+.|++++||+++.+. +||+|++|++|+|++.|+++++.
T Consensus       163 i~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~G~~~eLl  240 (255)
T d2hyda1         163 LSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELI  240 (255)
T ss_dssp             HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            33488999999999999  99999999999998776654 4789999999999875 69999999999999999998863

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=2.9e-18  Score=128.07  Aligned_cols=117  Identities=15%  Similarity=0.284  Sum_probs=85.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEe-CCeEEEEEEEecCCcchhh-hhhHHhhcCCcEEEEE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI-DGKEVKAQIWDTAGQERFR-AVTSAYYRGAVGALVV   93 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~i~v   93 (220)
                      +|+|+|++|||||||+++|.+..+.... +|.+...  ..+.+ ++..+.+.+||++|+..+. ..+..++..++++++|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v   78 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSS--AIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV   78 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEE--EEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEE--EEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceE
Confidence            5899999999999999999998876543 4444333  33333 4456788999999998764 4567788999999999


Q ss_pred             EeCCCccc-HHHHHHHHHHH-Hh--hCCCCCcEEEEEecCCCCCCC
Q 027703           94 YDITRRSS-FDSVKRWLEEL-TT--HCDTAVGRMLVGNKCDLDSIR  135 (220)
Q Consensus        94 ~d~~~~~~-~~~~~~~~~~l-~~--~~~~~~~~~~v~~k~Dl~~~~  135 (220)
                      +|+++..+ +....+++..+ ..  .....+|+++++||+|+..++
T Consensus        79 ~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          79 VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             EETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            99998765 34444554443 22  223558999999999997644

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=1.1e-18  Score=125.08  Aligned_cols=148  Identities=24%  Similarity=0.248  Sum_probs=101.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcchh---------hhhhHHhh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF---------RAVTSAYY   84 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~---------~~~~~~~~   84 (220)
                      +||+++|.+|||||||+|+|++........ +..+.......+...+  ..+.+||++|....         .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            699999999999999999999876443332 3333333444555555  56788999994311         01122345


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703           85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV  164 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (220)
                      ..+|++++++|++++.......-+ ..+     ...++++++||.|+...  ...++... ....+.+++.+||+++.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~-----~~~~~i~~~~k~d~~~~--~~~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVEK--INEEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCCC--CCHHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hhc-----ccccceeeeeeccccch--hhhHHHHH-HhCCCCcEEEEECCCCCCH
Confidence            779999999999988776554322 111     24678889999998652  33333322 2234568999999999999


Q ss_pred             HHHHHHHHH
Q 027703          165 EAAFEVVIR  173 (220)
Q Consensus       165 ~~l~~~l~~  173 (220)
                      ++++++|.+
T Consensus       150 ~~L~~~I~k  158 (160)
T d1xzpa2         150 EKLEESIYR  158 (160)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998865

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=4.9e-18  Score=124.61  Aligned_cols=158  Identities=23%  Similarity=0.183  Sum_probs=103.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcch------------hhhhh
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER------------FRAVT   80 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~------------~~~~~   80 (220)
                      .+||+++|.+|||||||+|+|++..... ...++.+.....+.+..++.  .+.++|++|...            .....
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhHHH
Confidence            5899999999999999999999875322 22222233333445556653  456778888532            12233


Q ss_pred             HHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-----CCeEEE
Q 027703           81 SAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-----GLFFME  155 (220)
Q Consensus        81 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~  155 (220)
                      ......+|.+++++|++.....+. ..+...+..   ...|+++++||.|+.........+........     ..+++.
T Consensus        86 ~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  161 (186)
T d1mkya2          86 VDSIEKADVVVIVLDATQGITRQD-QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF  161 (186)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHhcCCEEEEeecccccchhhH-HHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEE
Confidence            445678899999999977554433 233333333   35789999999998654544455544444432     347899


Q ss_pred             eccCCCCCHHHHHHHHHHHHHH
Q 027703          156 TSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       156 ~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      +||+++.|+++++++|.+.+.+
T Consensus       162 vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         162 TSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999876654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.4e-21  Score=150.86  Aligned_cols=174  Identities=14%  Similarity=0.257  Sum_probs=108.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch--hhhhhHHhhcCCcEEEEE
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER--FRAVTSAYYRGAVGALVV   93 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~--~~~~~~~~~~~~~~~i~v   93 (220)
                      .++|+|++|||||||++.|+|..           ++..|.+.++++ +.+    .++...  ......+..-...     
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~-----------~p~~G~I~~~g~-i~~----v~Q~~~l~~~tv~eni~~~~~-----  122 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL-----------EASEGIIKHSGR-VSF----CSQFSWIMPGTIKENIIFGVS-----  122 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS-----------CCSEEEEECCSC-EEE----ECSSCCCCSEEHHHHHTTTSC-----
T ss_pred             EEEEECCCCChHHHHHHHHhCCC-----------cCCCcEEEECCE-EEE----EeccccccCceeecccccccc-----
Confidence            58999999999999999999984           445677777764 222    222111  0122222211110     


Q ss_pred             EeCCCcccHHHHHHHH---HHHHhhCCCCCcEEEEEec-CCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHH
Q 027703           94 YDITRRSSFDSVKRWL---EELTTHCDTAVGRMLVGNK-CDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAA  167 (220)
Q Consensus        94 ~d~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~v~~k-~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l  167 (220)
                         .+...+..+.+..   ..+.... ...... ++.+ ..|.....+....|+++++++++.++|  ||++|+....++
T Consensus       123 ---~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~-~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i  197 (281)
T d1r0wa_         123 ---YDEYRYKSVVKACQLQQDITKFA-EQDNTV-LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV  197 (281)
T ss_dssp             ---CCHHHHHHHHHHTTCHHHHTTST-TGGGCE-ECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHH
T ss_pred             ---ccchHHHHHHHHHHhHHHHHhch-hhhhhh-hhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHH
Confidence               1111222221111   1111111 111111 1111 112222222334488999999999999  999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703          168 FEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS  216 (220)
Q Consensus       168 ~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~  216 (220)
                      ++.+......+.+++++||+++.+ .+||||++|++|+++++|+++++.
T Consensus       198 ~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~Gt~~eL~  245 (281)
T d1r0wa_         198 FESCVCKLMANKTRILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQ  245 (281)
T ss_dssp             HHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEECCEEEEECCHHHHh
Confidence            987666666789999999999876 579999999999999999998864

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.78  E-value=4.7e-18  Score=124.16  Aligned_cols=159  Identities=13%  Similarity=0.116  Sum_probs=103.9

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccc-------eeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATI-------GVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR   85 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~-------~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~   85 (220)
                      ..++|+++|.+++|||||+|+|++.........+.       +.......+..++  ..+.++|++|...+.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence            45799999999999999999999754222221111       1111111222233  46778999999888887788888


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCH--HHHHHHHHH----hCCeEEEeccC
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVST--EEGKSLAEE----EGLFFMETSAL  159 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~--~~~~~~~~~----~~~~~~~~Sa~  159 (220)
                      .+|++++++|+.+....+... .+..+..   ...|++++.||.|+........  +..+.+...    ...+++.+||+
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~~-~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTGE-HMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             hccccccccccccccchhhhh-hhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            999999999998876554432 2222322   2578899999999764321111  112222222    24588999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027703          160 DSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       160 ~~~~v~~l~~~l~~~~~~  177 (220)
                      +|.|++++++.|.+.+.+
T Consensus       158 ~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcCCc
Confidence            999999999999887754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=4.5e-19  Score=133.96  Aligned_cols=157  Identities=17%  Similarity=0.193  Sum_probs=109.8

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV   92 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   92 (220)
                      ..+||+++|++|||||||++++....+.    ||.|+..  ..+.+.+  +.+++||++|+..+...|..++..++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~~----pTiG~~~--~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHVV----LTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHCC----CCCSCEE--EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCcC----CCCCeEE--EEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            4689999999999999999999776543    5666533  3344544  788999999999999999999999999999


Q ss_pred             EEeCCCcc----------cHHHHHHHHHH-HHhhCCCCCcEEEEEecCCCCCCCC----CC-------------------
Q 027703           93 VYDITRRS----------SFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDSIRD----VS-------------------  138 (220)
Q Consensus        93 v~d~~~~~----------~~~~~~~~~~~-l~~~~~~~~~~~~v~~k~Dl~~~~~----~~-------------------  138 (220)
                      ++|.++..          ...+...++.. +........|+++++||+|+...+.    ..                   
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            99987542          22333333333 3333335789999999999742211    11                   


Q ss_pred             -------HHHHHHHHHH-------------hCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          139 -------TEEGKSLAEE-------------EGLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       139 -------~~~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                             ..++..++..             ..+....|||.|..+++.+|+.+.+.+.+
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence                   1223232211             11234469999999999999888766654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=4e-19  Score=130.51  Aligned_cols=158  Identities=16%  Similarity=0.078  Sum_probs=99.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh----h---hHHhhcCC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA----V---TSAYYRGA   87 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~----~---~~~~~~~~   87 (220)
                      .+|+++|++|||||||+|+|++........+..+.+...+...+.+. ..+.+||+||......    .   .......+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            46999999999999999999887655444444445544555544432 3567899999632111    1   12233557


Q ss_pred             cEEEEEEeCCCcccHH--HHHHHHHHHH-h--hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh--CCeEEEeccCC
Q 027703           88 VGALVVYDITRRSSFD--SVKRWLEELT-T--HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE--GLFFMETSALD  160 (220)
Q Consensus        88 ~~~i~v~d~~~~~~~~--~~~~~~~~l~-~--~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~  160 (220)
                      +.++++.+........  ....+..... .  ......|+++++||+|+....    +....+....  +.+++.+||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCC
Confidence            7777777665433222  2222222211 1  112357889999999986422    2223333332  56788999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027703          161 STNVEAAFEVVIREIYS  177 (220)
Q Consensus       161 ~~~v~~l~~~l~~~~~~  177 (220)
                      +.|++++++.|.+.+.+
T Consensus       157 g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         157 REGLRELLFEVANQLEN  173 (185)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHhhhh
Confidence            99999999999887754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=1.9e-18  Score=126.51  Aligned_cols=149  Identities=19%  Similarity=0.181  Sum_probs=93.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh---------------hhhh
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF---------------RAVT   80 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~---------------~~~~   80 (220)
                      .|+++|++|||||||+|+|.+........+..+...  ..+...    .+.++|+||....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--cccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            689999999999999999999876544444333322  223232    2467999995211               1122


Q ss_pred             HHhhcCCcEEEEEEeCCCcccHHHHH----------HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHH-HHHHh
Q 027703           81 SAYYRGAVGALVVYDITRRSSFDSVK----------RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKS-LAEEE  149 (220)
Q Consensus        81 ~~~~~~~~~~i~v~d~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~-~~~~~  149 (220)
                      ....+.+|++++++|...........          +.+..+.   ....|+++++||+|+....    ++... +....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~---~~~~p~iiv~NK~D~~~~~----~~~~~~~~~~~  148 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR---ELDIPTIVAVNKLDKIKNV----QEVINFLAEKF  148 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH---HTTCCEEEEEECGGGCSCH----HHHHHHHHHHH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH---HcCCCEEEEEeeeehhhhH----HHHHHHHHHHh
Confidence            33456789999999986432221111          1112222   2357899999999965322    22112 22222


Q ss_pred             -------CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          150 -------GLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       150 -------~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                             ...++.+||+++.|+++++++|.+.+.+
T Consensus       149 ~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         149 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                   2247889999999999999999988765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.74  E-value=5.4e-17  Score=119.94  Aligned_cols=154  Identities=17%  Similarity=0.140  Sum_probs=90.1

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCC--CcccceeeeeEEEEEeCCeEEEEEEEecCCcch-------------
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSN--SKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-------------   75 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~--~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-------------   75 (220)
                      .+...+|+|+|++|||||||+|+|++......  ..++.+..  ........   ...+.|+++...             
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~--~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~   94 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT--LNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CC--EEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeee--cccccccc---cceEEEEEeeccccccccccchhhh
Confidence            44456899999999999999999998653211  11222111  11122222   222345554211             


Q ss_pred             hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHH-HHHHHH----HhC
Q 027703           76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEE-GKSLAE----EEG  150 (220)
Q Consensus        76 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~-~~~~~~----~~~  150 (220)
                      ...........+++++++.|++.+..-.. .+++..+...   ..|+++++||+|+....  ...+ ...+..    ...
T Consensus        95 ~~~~~~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~~---~~piivv~NK~D~~~~~--~~~~~~~~~~~~l~~~~~  168 (195)
T d1svia_          95 MIETYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKYY---GIPVIVIATKADKIPKG--KWDKHAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSCGG--GHHHHHHHHHHHHTCCTT
T ss_pred             HHhhhhccccchhhhhhhhhccccccccc-cccccccccc---cCcceechhhccccCHH--HHHHHHHHHHHHhcccCC
Confidence            01122234456788999999976554332 2334444432   57899999999975422  2222 222222    245


Q ss_pred             CeEEEeccCCCCCHHHHHHHHHHHH
Q 027703          151 LFFMETSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       151 ~~~~~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                      .+++.+||+++.|+++++++|.+++
T Consensus       169 ~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         169 DELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999998876

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.70  E-value=1.3e-16  Score=120.73  Aligned_cols=157  Identities=18%  Similarity=0.149  Sum_probs=101.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEE----------------EeCCeEEEEEEEecCCcchhhhhh
Q 027703           17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVV----------------DIDGKEVKAQIWDTAGQERFRAVT   80 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i----------------~~~~~~~~~~~~d~~g~~~~~~~~   80 (220)
                      |+|+|.+++|||||+++|++.........+++........                .+......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998754322111111111011111                112233467889999998887777


Q ss_pred             HHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHH--------------------
Q 027703           81 SAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTE--------------------  140 (220)
Q Consensus        81 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~--------------------  140 (220)
                      ...+..+|++++|+|+.+...-+.. +.+..+..   .+.|++++.||.|+.........                    
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQ-EALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccchh-HHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            7777889999999999876555543 23333333   35789999999998653322110                    


Q ss_pred             HH----HHHHHH--------------hCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703          141 EG----KSLAEE--------------EGLFFMETSALDSTNVEAAFEVVIREIYS  177 (220)
Q Consensus       141 ~~----~~~~~~--------------~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  177 (220)
                      ..    ..+...              ..++++.+||++|.|++++++.|..+.++
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            00    111110              11367889999999999999999887765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.67  E-value=3.3e-15  Score=110.29  Aligned_cols=163  Identities=17%  Similarity=0.161  Sum_probs=103.9

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-----ccceeeeeEEEEE-------------------eCCeEEEE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-----ATIGVEFQTQVVD-------------------IDGKEVKA   65 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-----~t~~~~~~~~~i~-------------------~~~~~~~~   65 (220)
                      +++++++|+++|..++|||||+++|++........     .|...........                   .......+
T Consensus         1 ~~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (195)
T d1kk1a3           1 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   80 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             CCCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeE
Confidence            35678899999999999999999998753222111     0111101111110                   01123568


Q ss_pred             EEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CHHHHH
Q 027703           66 QIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--STEEGK  143 (220)
Q Consensus        66 ~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~~~~~  143 (220)
                      .+.|+||+..|......-+..+|+.+++.|+.+........+.+..+....  .++++++.||.|+......  ......
T Consensus        81 ~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~  158 (195)
T d1kk1a3          81 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIK  158 (195)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             eeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHH
Confidence            899999999888877777788999999999987643343334334333332  2457788999997642211  011122


Q ss_pred             HHHHHh---CCeEEEeccCCCCCHHHHHHHHHHH
Q 027703          144 SLAEEE---GLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus       144 ~~~~~~---~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      .++...   +++++++||++|.|++++++.+.++
T Consensus       159 ~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         159 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHhccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            333322   4689999999999999999988764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.63  E-value=1.6e-14  Score=107.37  Aligned_cols=162  Identities=17%  Similarity=0.167  Sum_probs=101.0

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc---c--cceeeeeEEEEEe------------------------CCe
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK---A--TIGVEFQTQVVDI------------------------DGK   61 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~---~--t~~~~~~~~~i~~------------------------~~~   61 (220)
                      ..|+++|+++|..++|||||+++|++..-.....   .  +.........+..                        ...
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF   84 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence            4677899999999999999999998742211110   0  0000000001100                        001


Q ss_pred             EEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHH
Q 027703           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEE  141 (220)
Q Consensus        62 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~  141 (220)
                      ...+.+.|+||+.+|......-...+|..++|.|+.+.......++.+..+...  ...|++++.||.|+..... ....
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~-~~~~  161 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEE-ALSQ  161 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHH-HHHH
T ss_pred             eEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--CCceeeeccccCCCccchH-HHHH
Confidence            235789999999988777777778899999999998764223333333333333  2247788899999864221 1111


Q ss_pred             ---HHHHHHHh---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703          142 ---GKSLAEEE---GLFFMETSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       142 ---~~~~~~~~---~~~~~~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                         ...+....   +++++.+||+++.|+.++++.+..++
T Consensus       162 ~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         162 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence               22222221   46899999999999999999877653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=4.9e-15  Score=107.48  Aligned_cols=158  Identities=21%  Similarity=0.184  Sum_probs=93.5

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh---------hHH
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV---------TSA   82 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~---------~~~   82 (220)
                      ++--.|+++|.+|||||||+|+|++..+.....+..+...........+. ..+..+|+++.......         ...
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-YQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT-EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC-ceeEeecCCCceecchhhhhhhhhhcccc
Confidence            34456999999999999999999987655443333333222222222222 34556788875422111         111


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC-CeEEEeccCCC
Q 027703           83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG-LFFMETSALDS  161 (220)
Q Consensus        83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  161 (220)
                      ....++.++++.|.....  .....+...+.   ....|.+++.+|.|..............+....+ .+++.+||+++
T Consensus        82 ~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  156 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWT--PDDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  156 (179)
T ss_dssp             CCCCEEEEEEEEETTCCC--HHHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             chhhcceeEEEEecCccc--hhHHHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCC
Confidence            223456666777765432  22222333332   2356778889999965433222233344444444 47899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027703          162 TNVEAAFEVVIREI  175 (220)
Q Consensus       162 ~~v~~l~~~l~~~~  175 (220)
                      .|++++++.|.+.+
T Consensus       157 ~gi~~L~~~i~~~l  170 (179)
T d1egaa1         157 LNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999987765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=9.9e-16  Score=113.93  Aligned_cols=116  Identities=19%  Similarity=0.300  Sum_probs=79.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHh----hcCCcE
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAY----YRGAVG   89 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~----~~~~~~   89 (220)
                      ..+|+++|++|||||||+|+|.+..+.+    +.+.......+  ......+.+||++|.......+..+    ...++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAA--DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEEET--TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceEEEE--EeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            3589999999999999999999987653    22222233333  3334567889999988665554443    344577


Q ss_pred             EEEEEeCCC-cccHHHHHHHHHH----HHhhCCCCCcEEEEEecCCCCCCC
Q 027703           90 ALVVYDITR-RSSFDSVKRWLEE----LTTHCDTAVGRMLVGNKCDLDSIR  135 (220)
Q Consensus        90 ~i~v~d~~~-~~~~~~~~~~~~~----l~~~~~~~~~~~~v~~k~Dl~~~~  135 (220)
                      +++++|..+ ..++.....|+..    +........|+++++||+|+....
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            788888654 5566666666543    334455678999999999987543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.58  E-value=6.6e-15  Score=108.48  Aligned_cols=155  Identities=15%  Similarity=0.072  Sum_probs=101.2

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhC----------------cCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARN----------------EFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF   76 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~----------------~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~   76 (220)
                      |+++|+++|..++|||||+++|++.                ..+.+....++.+  ...+.+......+.+.|+||...|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~--~~~~~~~~~~~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITIN--AAHVEYSTAARHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEE--CEEEEEECSSCEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCC--cceEEEEeceeeEEeecCcchHHH
Confidence            5789999999999999999999752                1111222233333  333334444457788999999988


Q ss_pred             hhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHH----HHHHHHHHh---
Q 027703           77 RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTE----EGKSLAEEE---  149 (220)
Q Consensus        77 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~----~~~~~~~~~---  149 (220)
                      ......-+..+|+.++|+|+.+...-+.. +.+..+...  ...|++++.||.|+..... ..+    +.+.+....   
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~QT~-~~~~~a~~~--~~~~iIv~iNK~D~~~~~~-~~~~i~~~i~~~l~~~~~~  155 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI--GVEHVVVYVNKADAVQDSE-MVELVELEIRELLTEFGYK  155 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT--TCCCEEEEEECGGGCSCHH-HHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchhHH-HHHHHHHHh--cCCcEEEEEecccccccHH-HHHHHHHHHHHHHHHhCCC
Confidence            88777778999999999999987655443 222333232  2356788899999753221 111    233444333   


Q ss_pred             --CCeEEEeccCCC----------CCHHHHHHHHHH
Q 027703          150 --GLFFMETSALDS----------TNVEAAFEVVIR  173 (220)
Q Consensus       150 --~~~~~~~Sa~~~----------~~v~~l~~~l~~  173 (220)
                        .++++.+|++++          .++.++++.+.+
T Consensus       156 ~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             cccCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence              357889999887          366666665543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=3.2e-14  Score=103.50  Aligned_cols=164  Identities=12%  Similarity=0.062  Sum_probs=82.4

Q ss_pred             CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc-------hhhhhh
Q 027703            8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE-------RFRAVT   80 (220)
Q Consensus         8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~-------~~~~~~   80 (220)
                      +-+.+..++|+++|.+|||||||+|+|++...........+...................++..+..       ......
T Consensus        10 ~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T d1puia_          10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRAL   89 (188)
T ss_dssp             GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHH
T ss_pred             HCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhh
Confidence            3345667999999999999999999999886544333222222222222222222222222222211       011111


Q ss_pred             HH---hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC--HHHHHHHHHHh--CCeE
Q 027703           81 SA---YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS--TEEGKSLAEEE--GLFF  153 (220)
Q Consensus        81 ~~---~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~--~~~~~~~~~~~--~~~~  153 (220)
                      ..   .......++.+.+......... ..++..+..   ...+.++++||.|+.......  .+..+......  ..++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (188)
T d1puia_          90 GEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV  165 (188)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             hhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcE
Confidence            11   1223344455555555443333 233333333   246788899999975321111  11112222221  3478


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 027703          154 METSALDSTNVEAAFEVVIREI  175 (220)
Q Consensus       154 ~~~Sa~~~~~v~~l~~~l~~~~  175 (220)
                      +.+||+++.|++++++.|.+++
T Consensus       166 i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         166 ETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            8899999999999999987764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.50  E-value=8.1e-15  Score=108.28  Aligned_cols=61  Identities=5%  Similarity=0.075  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhh-hhhcCcchhhhccccceeeeeec
Q 027703          139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNIS-RKVLNSDAYKAELSVNRVTLVKD  203 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~-~~~~~h~~~~~~~~a~~~~~~~~  203 (220)
                      ...+++++.++++.++|  ++++|..+..++++.+.+...++.+ ++..+|++    .+||++.+|+.
T Consensus       134 v~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~  197 (200)
T d1sgwa_         134 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK  197 (200)
T ss_dssp             HHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred             HHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence            34478999999999999  9999999999999999998877443 44444443    47999998853

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.48  E-value=2.6e-13  Score=100.50  Aligned_cols=115  Identities=13%  Similarity=0.056  Sum_probs=80.3

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCc--------C---------CCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNE--------F---------DSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER   75 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~--------~---------~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~   75 (220)
                      |+++|+++|..++|||||+++|+...        +         +.+..+.++.+.....+..++  ..+.+.||||+.+
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence            57899999999999999999996320        0         000111233333444455555  4667899999999


Q ss_pred             hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCc-EEEEEecCCCCC
Q 027703           76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDS  133 (220)
Q Consensus        76 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~  133 (220)
                      |......-+..+|+.++|+|+.+....+....| ......   ..| ++++.||.|+..
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~~---gi~~iiv~iNK~D~~~  134 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQV---GVPYIVVFMNKVDMVD  134 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHHT---TCCCEEEEEECGGGCC
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHHc---CCCeEEEEEEecccCC
Confidence            988888888999999999999988777665433 333332   344 566799999754

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.47  E-value=9.2e-13  Score=98.63  Aligned_cols=151  Identities=19%  Similarity=0.190  Sum_probs=95.6

Q ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhhCc--CCC-------------------------------CCcccceeeeeEEEE
Q 027703           10 GEEYLFKIVLIGDSAVGKSNLLSRFARNE--FDS-------------------------------NSKATIGVEFQTQVV   56 (220)
Q Consensus        10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~--~~~-------------------------------~~~~t~~~~~~~~~i   56 (220)
                      ++...++++++|-.++|||||+.+|+...  +..                               ......+.+.....+
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            45678999999999999999999996321  100                               000111111112222


Q ss_pred             EeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC
Q 027703           57 DIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD  136 (220)
Q Consensus        57 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~  136 (220)
                      ..  ....+.+.|+||+..|......-...+|+.++|+|+.....-+.... +..+...  .-..++++.||.|+....+
T Consensus        85 ~~--~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~-~~~~~~~--gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          85 ST--AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH-SYIASLL--GIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             EC--SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH-HHHHHHT--TCCEEEEEEECTTTTTSCH
T ss_pred             ec--cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH-HHHHHHc--CCCEEEEEEEccccccccc
Confidence            22  33567889999999998888888899999999999988765554332 2222222  1134678899999864332


Q ss_pred             CCHHH----HHHHHHHhC-----CeEEEeccCCCCCHH
Q 027703          137 VSTEE----GKSLAEEEG-----LFFMETSALDSTNVE  165 (220)
Q Consensus       137 ~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~~v~  165 (220)
                      ....+    ...++...+     ++++++||++|.|+.
T Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         160 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            22222    334444432     467889999999874

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.41  E-value=3.5e-12  Score=98.00  Aligned_cols=114  Identities=20%  Similarity=0.235  Sum_probs=82.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCc--CCC----------------CCcccceeeeeEEEEEeCCeEEEEEEEecCCcch
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNE--FDS----------------NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER   75 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~--~~~----------------~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~   75 (220)
                      .-+|+++|..|+|||||+.+|+...  ...                +.....++......+.+++  .++++.||||..+
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~d   83 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHVD   83 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSSS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchhh
Confidence            3469999999999999999996421  111                1112222333334455555  5778899999999


Q ss_pred             hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703           76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS  133 (220)
Q Consensus        76 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~  133 (220)
                      |.......++.+|+.++|+|+.+...-+....| .....   .+.|.+++.||.|...
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~---~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK---YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT---TTCCEEEEEECTTSTT
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH---cCCCEEEEEecccccc
Confidence            999999999999999999999998777776544 43333   3689999999999754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.35  E-value=1.9e-11  Score=93.52  Aligned_cols=112  Identities=18%  Similarity=0.216  Sum_probs=80.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCc--CCCC----------------CcccceeeeeEEEEEeCCeEEEEEEEecCCcchh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNE--FDSN----------------SKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF   76 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~--~~~~----------------~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~   76 (220)
                      -+|+|+|..|+|||||+.+|+...  ....                .....++......+.+++  .+++++||||..+|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence            359999999999999999995331  1110                012223333444555655  46788999999999


Q ss_pred             hhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCC
Q 027703           77 RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD  132 (220)
Q Consensus        77 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~  132 (220)
                      .......++.+|+.++|.|+.+...-+....| ......   ..|.+++.||.|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhhc---cccccccccccccc
Confidence            99888899999999999999987777665444 333332   57889999999953

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.34  E-value=1.2e-11  Score=94.60  Aligned_cols=127  Identities=13%  Similarity=0.062  Sum_probs=76.8

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-------hhHH
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-------VTSA   82 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-------~~~~   82 (220)
                      ....++|+++|.+|||||||+|.|++......+. +..+..........++  ..+.++||||......       ....
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHH
Confidence            3456999999999999999999999986444332 3333444455556666  4678899999642211       1111


Q ss_pred             --hhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhCCC--CCcEEEEEecCCCCCCCCCCHH
Q 027703           83 --YYRGAVGALVVYDITRRS-SFDSVKRWLEELTTHCDT--AVGRMLVGNKCDLDSIRDVSTE  140 (220)
Q Consensus        83 --~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~--~~~~~~v~~k~Dl~~~~~~~~~  140 (220)
                        .....+++++|.+.+... +.... ..+..+.....+  -.+++++.||.|.........+
T Consensus       107 ~~~~~~~~~il~v~~~~~~r~~~~~~-~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e  168 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDAYRVDNLDK-LVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD  168 (257)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHHHH-HHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred             HHhcCCCCeEEEEEECCCCCCCHHHH-HHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHH
Confidence              123457788888876532 22222 223333322221  1467899999997654444443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=1.2e-11  Score=100.40  Aligned_cols=157  Identities=13%  Similarity=0.161  Sum_probs=87.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCccccee---eeeEEEEEeCCeEEEEEEEecCCcchhhhh-----hHHhhc
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGV---EFQTQVVDIDGKEVKAQIWDTAGQERFRAV-----TSAYYR   85 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~---~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~-----~~~~~~   85 (220)
                      .++|+|+|.+|||||||+|+|.|...........+.   ......+...+. -.+.+|||||.......     ......
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~-~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNI-PNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSC-TTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCC-CeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            489999999999999999999986543322211111   111122222221 24668999996532221     122345


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCC-------CCCCCCHHH----H----HHHHHHhC
Q 027703           86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD-------SIRDVSTEE----G----KSLAEEEG  150 (220)
Q Consensus        86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~-------~~~~~~~~~----~----~~~~~~~~  150 (220)
                      .+|.++++.|.  ...-.+. ..+..+...   ..|+++|.||+|..       .......+.    .    .......+
T Consensus       135 ~~d~~l~~~~~--~~~~~d~-~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~  208 (400)
T d1tq4a_         135 EYDFFIIISAT--RFKKNDI-DIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  208 (400)
T ss_dssp             GCSEEEEEESS--CCCHHHH-HHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             cceEEEEecCC--CCCHHHH-HHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcC
Confidence            67777666553  2233332 233444333   57899999999942       111122222    1    11222222


Q ss_pred             ---CeEEEeccCC--CCCHHHHHHHHHHHHHH
Q 027703          151 ---LFFMETSALD--STNVEAAFEVVIREIYS  177 (220)
Q Consensus       151 ---~~~~~~Sa~~--~~~v~~l~~~l~~~~~~  177 (220)
                         .+++-+|+.+  ..++..+.+.+.+.+.+
T Consensus       209 ~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         209 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence               2567777765  34888999988887754

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=7.1e-12  Score=94.72  Aligned_cols=150  Identities=15%  Similarity=0.135  Sum_probs=94.9

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhCc--CC-----------------------------CCCcccceeeeeEEEEEeCC
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARNE--FD-----------------------------SNSKATIGVEFQTQVVDIDG   60 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~i~~~~   60 (220)
                      .++++|+++|-.++|||||+.+|+...  ..                             .+..+.+++......+...+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            456899999999999999999996310  00                             01112333433444444444


Q ss_pred             eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccH------HHHHHHHHHHHhhCCCCC-cEEEEEecCCCCC
Q 027703           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSF------DSVKRWLEELTTHCDTAV-GRMLVGNKCDLDS  133 (220)
Q Consensus        61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~l~~~~~~~~-~~~~v~~k~Dl~~  133 (220)
                        .++.+.|+||+.+|......-...+|+.++|.|+......      ....+.+......   .+ +++++.||.|+..
T Consensus        84 --~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          84 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGT
T ss_pred             --EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCC
Confidence              5788899999999988888888999999999998754211      0111222222221   23 4677899999765


Q ss_pred             CCCCCHH----HHHHHHHHhC-----CeEEEeccCCCCCHHH
Q 027703          134 IRDVSTE----EGKSLAEEEG-----LFFMETSALDSTNVEA  166 (220)
Q Consensus       134 ~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  166 (220)
                      .+....+    +...++...+     +++...|+..+.|+.+
T Consensus       159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            4432222    2334444332     5678899999988543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.26  E-value=1.5e-11  Score=92.18  Aligned_cols=149  Identities=16%  Similarity=0.168  Sum_probs=89.6

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCc-------------------------------CCCCCcccceeeeeEEEEEeCCe
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNE-------------------------------FDSNSKATIGVEFQTQVVDIDGK   61 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~-------------------------------~~~~~~~t~~~~~~~~~i~~~~~   61 (220)
                      |+++|+++|--++|||||+.+|+...                               .+.......+.......+..  .
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~--~   79 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET--K   79 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--S
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec--C
Confidence            47899999999999999999985310                               01111111122222222333  3


Q ss_pred             EEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHH------HHHHHHHHHHhhCCCCCcEEEEEecCCCCCCC
Q 027703           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFD------SVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR  135 (220)
Q Consensus        62 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~  135 (220)
                      ...+.+.|+||+..|......-...+|+.++|+|+.+...-+      ...+.+......  ...+++++.||.|+....
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCcc
Confidence            457888999999999988888889999999999998753211      111222222222  234567889999986422


Q ss_pred             --CCCHHH----HHHHHHHh-----CCeEEEeccCCCCCHH
Q 027703          136 --DVSTEE----GKSLAEEE-----GLFFMETSALDSTNVE  165 (220)
Q Consensus       136 --~~~~~~----~~~~~~~~-----~~~~~~~Sa~~~~~v~  165 (220)
                        ....++    ...+....     ++.++.+||..+.|+.
T Consensus       158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence              111222    22222222     3567889999998874

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.20  E-value=4e-11  Score=90.92  Aligned_cols=153  Identities=18%  Similarity=0.113  Sum_probs=80.5

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcC--C-----------------------------CCCcccceeeeeEEEEEeCCe
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEF--D-----------------------------SNSKATIGVEFQTQVVDIDGK   61 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~i~~~~~   61 (220)
                      ++++|+++|--++|||||+.+|+...-  .                             ....+..........+..  .
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~--~  100 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET--E  100 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--S
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc--c
Confidence            467999999999999999999943110  0                             000011111111112222  2


Q ss_pred             EEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHH------HHHHHHHHHHhhCCCCCcEEEEEecCCCCCCC
Q 027703           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFD------SVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR  135 (220)
Q Consensus        62 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~  135 (220)
                      ...+.+.|+||+..|......-...+|+.++|+|+.....-.      ...+.+..+...  .-.+++++.||.|+....
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~--~i~~iiv~iNKmD~~~~~  178 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ--GINHLVVVINKMDEPSVQ  178 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT--TCSSEEEEEECTTSTTCS
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc--CCCeEEEEEEcCCCCccc
Confidence            346788999999988887777788999999999997642110      122222222222  123467889999986422


Q ss_pred             C--CCHHH----HHHHHHHh-------CCeEEEeccCCCCCHHHHHH
Q 027703          136 D--VSTEE----GKSLAEEE-------GLFFMETSALDSTNVEAAFE  169 (220)
Q Consensus       136 ~--~~~~~----~~~~~~~~-------~~~~~~~Sa~~~~~v~~l~~  169 (220)
                      .  ...++    ...+..+.       .++++++||++|.|+.++++
T Consensus       179 ~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         179 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            1  11122    22222222       35789999999999976543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=1.6e-10  Score=91.27  Aligned_cols=130  Identities=21%  Similarity=0.212  Sum_probs=86.7

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCc----------------CCCCCcccceeeeeEEEEEe--------------CC
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNE----------------FDSNSKATIGVEFQTQVVDI--------------DG   60 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~----------------~~~~~~~t~~~~~~~~~i~~--------------~~   60 (220)
                      ++..-+|+|+|..++|||||+.+|+...                .+.+..+..+.......+.+              ++
T Consensus        14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~   93 (341)
T d1n0ua2          14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   93 (341)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence            3344459999999999999999996211                11111122222222223322              23


Q ss_pred             eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCC-CCCCCCH
Q 027703           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD-SIRDVST  139 (220)
Q Consensus        61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~-~~~~~~~  139 (220)
                      +...+++.||||+.+|.......++.+|+.++|+|+.+....+....|....    ....|.+++.||.|.. ..-....
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~----~~~~p~i~viNKiDr~~~el~~~~  169 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRALLELQVSK  169 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHHHHTSCCCH
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH----HcCCCeEEEEECcccccccHHhhH
Confidence            5678999999999999999989999999999999999988777765443332    2357899999999964 2234455


Q ss_pred             HHHHH
Q 027703          140 EEGKS  144 (220)
Q Consensus       140 ~~~~~  144 (220)
                      ++++.
T Consensus       170 ~~~~~  174 (341)
T d1n0ua2         170 EDLYQ  174 (341)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.07  E-value=3.7e-10  Score=88.70  Aligned_cols=102  Identities=13%  Similarity=0.052  Sum_probs=57.1

Q ss_pred             EEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHH
Q 027703           64 KAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGK  143 (220)
Q Consensus        64 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~  143 (220)
                      .+.+.+|.|....   ...+...+|..+++.........+.+..-+-+        .+-+++.||.|+............
T Consensus       145 d~iiiETVG~gq~---e~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE--------~aDi~vvNKaD~~~~~~~~~~~~~  213 (323)
T d2qm8a1         145 DVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKGIFE--------LADMIAVNKADDGDGERRASAAAS  213 (323)
T ss_dssp             CEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTTHHH--------HCSEEEEECCSTTCCHHHHHHHHH
T ss_pred             CeEEEeehhhhhh---hhhhhcccceEEEEeeccchhhhhhhhhhHhh--------hhheeeEeccccccchHHHHHHHH
Confidence            3445566654321   12344568888888877655444332211111        234788999997643221111111


Q ss_pred             HHHH----------HhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703          144 SLAE----------EEGLFFMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       144 ~~~~----------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      .+..          .+..+++.+|++++.|+++++++|.+...
T Consensus       214 ~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         214 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            1111          14567999999999999999999987654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1.7e-10  Score=90.81  Aligned_cols=87  Identities=20%  Similarity=0.126  Sum_probs=49.8

Q ss_pred             HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC--HHHHHHHHH-------HhCCe
Q 027703           82 AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS--TEEGKSLAE-------EEGLF  152 (220)
Q Consensus        82 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~--~~~~~~~~~-------~~~~~  152 (220)
                      .+...+|.+++|.+.......+.+..-+-+        .+-+++.||.|........  ..+......       .+..+
T Consensus       163 ~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e--------~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~  234 (327)
T d2p67a1         163 EVARMVDCFISLQIAGGGDDLQGIKKGLME--------VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPR  234 (327)
T ss_dssp             HHHTTCSEEEEEECC------CCCCHHHHH--------HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCE
T ss_pred             hhhhccceEEEEecCCCchhhhhhchhhhc--------cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcce
Confidence            455678888888776544433333222222        2337788999976422111  111111111       22457


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHH
Q 027703          153 FMETSALDSTNVEAAFEVVIREIY  176 (220)
Q Consensus       153 ~~~~Sa~~~~~v~~l~~~l~~~~~  176 (220)
                      ++.|||+++.|++++++.|.+...
T Consensus       235 V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         235 VLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             EEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             eEEEEeeCCCCHHHHHHHHHHHHH
Confidence            899999999999999999987654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.04  E-value=1.9e-10  Score=86.60  Aligned_cols=111  Identities=14%  Similarity=-0.055  Sum_probs=61.4

Q ss_pred             EEEEEecCCcchhhhhhHH---hh--cCCcEEEEEEeCCCcccHHHHHH-HHHHHHhhCCCCCcEEEEEecCCCCCCCCC
Q 027703           64 KAQIWDTAGQERFRAVTSA---YY--RGAVGALVVYDITRRSSFDSVKR-WLEELTTHCDTAVGRMLVGNKCDLDSIRDV  137 (220)
Q Consensus        64 ~~~~~d~~g~~~~~~~~~~---~~--~~~~~~i~v~d~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~  137 (220)
                      .+.+.|++|+..+......   ..  ...+..+++.|+.....-+.... .+........-..|.+++.||.|+......
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~~  175 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEK  175 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHHH
Confidence            4667899998654322111   11  23456788888754333222211 111111111125788999999997643211


Q ss_pred             CHHH--------------------------HHHHHH--HhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703          138 STEE--------------------------GKSLAE--EEGLFFMETSALDSTNVEAAFEVVIRE  174 (220)
Q Consensus       138 ~~~~--------------------------~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~l~~~  174 (220)
                      ....                          ......  ...++++.+||.+++|++++++.|.+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         176 ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            0000                          000111  135688999999999999999988765

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.97  E-value=2.4e-09  Score=82.47  Aligned_cols=83  Identities=22%  Similarity=0.161  Sum_probs=59.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe---------------EEEEEEEecCCcchh--
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK---------------EVKAQIWDTAGQERF--   76 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~---------------~~~~~~~d~~g~~~~--   76 (220)
                      .+||+++|.|+||||||+++|++........|..+.++..+.+...+.               ...+.+.|++|.-+-  
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999998766555566666666677765442               125788999996422  


Q ss_pred             -----hhhhHHhhcCCcEEEEEEeC
Q 027703           77 -----RAVTSAYYRGAVGALVVYDI   96 (220)
Q Consensus        77 -----~~~~~~~~~~~~~~i~v~d~   96 (220)
                           ........+.+|+++.|.|+
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHHhccceEEEeec
Confidence                 22455677899999999986

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.88  E-value=1.8e-10  Score=82.67  Aligned_cols=46  Identities=7%  Similarity=-0.073  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCC
Q 027703          165 EAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS  211 (220)
Q Consensus       165 ~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~  211 (220)
                      .++.+.+.+.+.+ +.++++++|+.. ....++++..+.+|+++.-+.
T Consensus       116 ~~~~~~l~~~l~~~~~~il~~~h~~~-~~~~~~~i~~~~~~~i~~v~~  162 (178)
T d1ye8a1         116 KKFRDLVRQIMHDPNVNVVATIPIRD-VHPLVKEIRRLPGAVLIELTP  162 (178)
T ss_dssp             HHHHHHHHHHHTCTTSEEEEECCSSC-CSHHHHHHHTCTTCEEEECCT
T ss_pred             HHHHHHHHHHhccCCCEEEEEEccHH-HHHhhceEEEEeCCEEEEECC
Confidence            5566777777765 677888888875 466899999999999865443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.85  E-value=2.3e-09  Score=84.16  Aligned_cols=84  Identities=20%  Similarity=0.137  Sum_probs=46.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEe----------------------CCeEEEEEEEecCC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI----------------------DGKEVKAQIWDTAG   72 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~----------------------~~~~~~~~~~d~~g   72 (220)
                      +||+++|.|+||||||+|+|++........|..+.++..|....                      ......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            58999999999999999999998655544454444444333210                      01235788999999


Q ss_pred             cchh-------hhhhHHhhcCCcEEEEEEeCCC
Q 027703           73 QERF-------RAVTSAYYRGAVGALVVYDITR   98 (220)
Q Consensus        73 ~~~~-------~~~~~~~~~~~~~~i~v~d~~~   98 (220)
                      .-..       ........+.+|+++.|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            6431       1122234578899999999864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.85  E-value=4e-09  Score=81.96  Aligned_cols=86  Identities=14%  Similarity=0.174  Sum_probs=63.7

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCe---------------EEEEEEEecCCcch-
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGK---------------EVKAQIWDTAGQER-   75 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~---------------~~~~~~~d~~g~~~-   75 (220)
                      ..+|++++|.|+||||||+++|++...+ ....|..++++..+.+.+.+.               ...+.+.|++|... 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            4589999999999999999999987653 333455566766777766542               24678899998542 


Q ss_pred             ------hhhhhHHhhcCCcEEEEEEeCCC
Q 027703           76 ------FRAVTSAYYRGAVGALVVYDITR   98 (220)
Q Consensus        76 ------~~~~~~~~~~~~~~~i~v~d~~~   98 (220)
                            .........+.+|+++.|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                  12345667799999999998754

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.53  E-value=2.8e-07  Score=71.54  Aligned_cols=31  Identities=29%  Similarity=0.516  Sum_probs=25.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCCCCCc
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSK   44 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~   44 (220)
                      ..+|+|+|..++|||||||+|+|..+.+.+.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~   54 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGS   54 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCC
Confidence            4689999999999999999999998744433

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=5.2e-07  Score=69.63  Aligned_cols=119  Identities=18%  Similarity=0.200  Sum_probs=69.2

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEE-------e---CC---------------------
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVD-------I---DG---------------------   60 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~-------~---~~---------------------   60 (220)
                      ...+|+|+|.-++|||||+|+|+|..+.+.+. ++...........       .   .+                     
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            35689999999999999999999998744433 3321111100000       0   00                     


Q ss_pred             ----------e--------EEEEEEEecCCcchh-------------hhhhHHhhcCCc-EEEEEEeCCCcccHHHHHHH
Q 027703           61 ----------K--------EVKAQIWDTAGQERF-------------RAVTSAYYRGAV-GALVVYDITRRSSFDSVKRW  108 (220)
Q Consensus        61 ----------~--------~~~~~~~d~~g~~~~-------------~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~  108 (220)
                                .        ...+.++|+||....             ......|....+ .++++.++...........+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                      0        013678999995321             122344556666 45556666655444444444


Q ss_pred             HHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703          109 LEELTTHCDTAVGRMLVGNKCDLDSI  134 (220)
Q Consensus       109 ~~~l~~~~~~~~~~~~v~~k~Dl~~~  134 (220)
                      ...+   .....+++.|.||.|....
T Consensus       185 ~~~~---~~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         185 AKEV---DPQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHH---CTTCSSEEEEEECGGGSCT
T ss_pred             HHHh---CcCCCceeeEEeccccccc
Confidence            4433   2334678999999997643

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=3.3e-07  Score=70.02  Aligned_cols=59  Identities=25%  Similarity=0.399  Sum_probs=36.6

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcc
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQE   74 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~   74 (220)
                      ....++++|+|-|+||||||+|+|.+......+. |..+...  ..+..+.   .+.+.||||..
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~--~~i~~~~---~~~l~DTPGi~  168 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGIL  168 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccc--eEEECCC---CeEEecCCCcc
Confidence            4456999999999999999999999987654444 3332221  1222222   36679999964

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.15  E-value=8.8e-07  Score=65.21  Aligned_cols=25  Identities=32%  Similarity=0.243  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCcCC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNEFD   40 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~~~   40 (220)
                      ..+++|++|||||||+|+|.+....
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~  121 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKL  121 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhh
Confidence            4689999999999999999876433

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.01  E-value=3.3e-05  Score=56.24  Aligned_cols=84  Identities=18%  Similarity=0.034  Sum_probs=47.2

Q ss_pred             EEEEEecCCcchhhhh----hHHhhc--------CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCC
Q 027703           64 KAQIWDTAGQERFRAV----TSAYYR--------GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL  131 (220)
Q Consensus        64 ~~~~~d~~g~~~~~~~----~~~~~~--------~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl  131 (220)
                      .+.+.||+|.......    ...+..        ..+-.++|.+++..  .+.+..........    .+--++.+|.|-
T Consensus        95 d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~----~~~~lI~TKlDe  168 (213)
T d1vmaa2          95 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV----NVTGIILTKLDG  168 (213)
T ss_dssp             SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS----CCCEEEEECGGG
T ss_pred             CEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc----CCceEEEecccC
Confidence            5678999996543221    111111        13567889987542  33333333333222    223467899993


Q ss_pred             CCCCCCCHHHHHHHHHHhCCeEEEec
Q 027703          132 DSIRDVSTEEGKSLAEEEGLFFMETS  157 (220)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (220)
                          ......+.+.+...++++..++
T Consensus       169 ----~~~~G~~l~~~~~~~~Pi~~i~  190 (213)
T d1vmaa2         169 ----TAKGGITLAIARELGIPIKFIG  190 (213)
T ss_dssp             ----CSCTTHHHHHHHHHCCCEEEEE
T ss_pred             ----CCcccHHHHHHHHHCCCEEEEe
Confidence                2345566678888888876643

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=7.1e-05  Score=54.27  Aligned_cols=84  Identities=14%  Similarity=-0.007  Sum_probs=46.6

Q ss_pred             EEEEEecCCcchhhh----hhHH---hhc-----CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCC
Q 027703           64 KAQIWDTAGQERFRA----VTSA---YYR-----GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL  131 (220)
Q Consensus        64 ~~~~~d~~g~~~~~~----~~~~---~~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl  131 (220)
                      .+.+.||+|......    ....   ..+     ..+..++|.|++..  .+.+..........    .+--++.+|.|-
T Consensus        93 d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~----~~~~lIlTKlDe  166 (211)
T d2qy9a2          93 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV----GLTGITLTKLDG  166 (211)
T ss_dssp             SEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHS----CCCEEEEECCTT
T ss_pred             CEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhcc----CCceEEEeecCC
Confidence            467899999643322    1111   111     24567889887543  33333333333222    223567899993


Q ss_pred             CCCCCCCHHHHHHHHHHhCCeEEEec
Q 027703          132 DSIRDVSTEEGKSLAEEEGLFFMETS  157 (220)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (220)
                          ......+.+.+...++++.-++
T Consensus       167 ----~~~~G~~l~~~~~~~~Pi~~i~  188 (211)
T d2qy9a2         167 ----TAKGGVIFSVADQFGIPIRYIG  188 (211)
T ss_dssp             ----CTTTTHHHHHHHHHCCCEEEEE
T ss_pred             ----CCCccHHHHHHHHHCCCEEEEe
Confidence                2235666677888888776643

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.96  E-value=6.3e-07  Score=66.22  Aligned_cols=23  Identities=39%  Similarity=0.554  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      ..+++|++|||||||+|+|.+..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            45799999999999999998874

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.82  E-value=4.6e-06  Score=58.51  Aligned_cols=27  Identities=19%  Similarity=0.347  Sum_probs=23.8

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ++..++|++.|++||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            455689999999999999999999765

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.82  E-value=4.4e-06  Score=59.04  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +|+|.|++|||||||.++|...
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=6.8e-05  Score=54.99  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..=+.|.|--|||||||+++++..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc
Confidence            344788999999999999999875

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.81  E-value=7.6e-05  Score=54.18  Aligned_cols=89  Identities=12%  Similarity=-0.005  Sum_probs=51.0

Q ss_pred             EEEEEecCCcchhhh------hhHHh--hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCC
Q 027703           64 KAQIWDTAGQERFRA------VTSAY--YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR  135 (220)
Q Consensus        64 ~~~~~d~~g~~~~~~------~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~  135 (220)
                      .+.+.||+|......      ....+  ....+-.++|.+++....  .+..........    .+--++.+|.|-    
T Consensus        96 d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~~~~----~~~~lI~TKlDe----  165 (211)
T d1j8yf2          96 EIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFNQAS----KIGTIIITKMDG----  165 (211)
T ss_dssp             SEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHHC----TTEEEEEECTTS----
T ss_pred             ceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhhhccc----CcceEEEecccC----
Confidence            567899999653321      11111  223566788988865432  222222222221    123466999993    


Q ss_pred             CCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703          136 DVSTEEGKSLAEEEGLFFMETSALDSTNV  164 (220)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (220)
                      ......+.+.+...++++..++  +|+++
T Consensus       166 t~~~G~~l~~~~~~~lPi~~it--~Gq~v  192 (211)
T d1j8yf2         166 TAKGGGALSAVAATGATIKFIG--TGEKI  192 (211)
T ss_dssp             CSCHHHHHHHHHTTTCCEEEEE--CSSST
T ss_pred             CCcccHHHHHHHHHCcCEEEEe--CCCCc
Confidence            3457778888889998877754  34444

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=5.4e-06  Score=57.83  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      ++|+|++|||||||++.|...
T Consensus         5 i~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            899999999999999999753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.78  E-value=0.0002  Score=51.79  Aligned_cols=82  Identities=12%  Similarity=0.013  Sum_probs=46.0

Q ss_pred             EEEEEEecCCcchhhhh----hHHhh--------cCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhCCCCCcEEEEEecC
Q 027703           63 VKAQIWDTAGQERFRAV----TSAYY--------RGAVGALVVYDITRRS-SFDSVKRWLEELTTHCDTAVGRMLVGNKC  129 (220)
Q Consensus        63 ~~~~~~d~~g~~~~~~~----~~~~~--------~~~~~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~k~  129 (220)
                      ..+.+.||+|.......    ...+.        ...+-.++|.|++... ....+...+..+       .+--++.+|.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-------GLTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-------CCSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-------CCceEEEecc
Confidence            35678999997543221    11111        2446678899986643 233333332322       1224678999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCeEEE
Q 027703          130 DLDSIRDVSTEEGKSLAEEEGLFFME  155 (220)
Q Consensus       130 Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (220)
                      |-.    .....+.+.+...++++.-
T Consensus       162 Det----~~~G~~l~~~~~~~~Pi~~  183 (207)
T d1okkd2         162 DGT----AKGGVLIPIVRTLKVPIKF  183 (207)
T ss_dssp             TSS----CCCTTHHHHHHHHCCCEEE
T ss_pred             CCC----CCccHHHHHHHHHCCCEEE
Confidence            932    2345566777788887655

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.76  E-value=5.2e-06  Score=58.06  Aligned_cols=24  Identities=38%  Similarity=0.528  Sum_probs=21.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .++|++.|++||||||+.++|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.70  E-value=0.00023  Score=51.43  Aligned_cols=83  Identities=18%  Similarity=0.022  Sum_probs=46.2

Q ss_pred             EEEEEecCCcchhhh----hhHHh--hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC
Q 027703           64 KAQIWDTAGQERFRA----VTSAY--YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV  137 (220)
Q Consensus        64 ~~~~~d~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~  137 (220)
                      .+.++||+|......    ....+  ....+-.++|.++....  +.+..........    ..--++.+|.|-    ..
T Consensus        94 d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~--~~~~~~~~f~~~~----~~~~~I~TKlDe----~~  163 (207)
T d1ls1a2          94 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDEKV----GVTGLVLTKLDG----DA  163 (207)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH--HHHHHHHHHHHHT----CCCEEEEECGGG----CS
T ss_pred             cceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccch--hHHHHHHHHHhhC----CCCeeEEeecCc----cc
Confidence            567899999654322    11112  23557778888875542  2222222222211    122467899993    22


Q ss_pred             CHHHHHHHHHHhCCeEEEe
Q 027703          138 STEEGKSLAEEEGLFFMET  156 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~  156 (220)
                      ....+.+.....++++.-+
T Consensus       164 ~~G~~l~~~~~~~~Pi~~i  182 (207)
T d1ls1a2         164 RGGAALSARHVTGKPIYFA  182 (207)
T ss_dssp             SCHHHHHHHHHHCCCEEEE
T ss_pred             cchHHHHHHHHHCCCEEEE
Confidence            4566677788888876553

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.66  E-value=1.1e-05  Score=57.65  Aligned_cols=25  Identities=28%  Similarity=0.461  Sum_probs=22.4

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..+||+++|+|||||||..+.|...
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999999754

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.65  E-value=1.2e-05  Score=56.81  Aligned_cols=23  Identities=22%  Similarity=0.432  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999664

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.60  E-value=1.6e-05  Score=55.48  Aligned_cols=21  Identities=19%  Similarity=0.446  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      ++|+|.+|||||||+++|...
T Consensus         4 i~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            479999999999999999654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.58  E-value=1.7e-05  Score=56.26  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=21.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.57  E-value=1.9e-05  Score=53.99  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |.+.|+|||||||+.+.|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            778999999999999998653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.56  E-value=2e-05  Score=55.82  Aligned_cols=23  Identities=22%  Similarity=0.553  Sum_probs=21.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999765

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.54  E-value=1.6e-05  Score=56.41  Aligned_cols=21  Identities=43%  Similarity=0.610  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |+++||+||||||+++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999999765

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=2e-05  Score=55.63  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +||+++|+|||||||..+.|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2.5e-05  Score=54.83  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHhhCc
Q 027703           17 IVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~   38 (220)
                      |.|.|++|+|||||++.+...-
T Consensus         4 v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            8899999999999999997653

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=2.5e-05  Score=55.28  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=21.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+||+++|++||||||+.+.|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            378999999999999999999765

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.49  E-value=2.8e-05  Score=55.64  Aligned_cols=25  Identities=24%  Similarity=0.541  Sum_probs=22.7

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..++|+|+|+|||||||+-+.|...
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            4579999999999999999999875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.46  E-value=3e-05  Score=53.87  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |+|.|++||||||+.+.|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.45  E-value=2.4e-05  Score=55.82  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ++|+|+||+||||||+.+.|...
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999665

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=2.3e-05  Score=55.55  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |+++||+|||||||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999854

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=4e-05  Score=54.57  Aligned_cols=21  Identities=43%  Similarity=0.640  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |+|+||+|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999765

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=4.5e-05  Score=52.39  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .|.++|++||||||+-+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999765

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=6.1e-05  Score=53.71  Aligned_cols=23  Identities=17%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.|+|+|||||||||..++|...
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.33  E-value=5.5e-05  Score=53.15  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |+|.|++||||||+.+.|...
T Consensus         4 I~i~G~~GsGKsT~~~~L~~~   24 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMDN   24 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999999653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=6.6e-05  Score=52.15  Aligned_cols=21  Identities=43%  Similarity=0.529  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +++.|++||||||+.+.|...
T Consensus         9 ivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            668999999999999999765

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=6.8e-05  Score=53.54  Aligned_cols=21  Identities=43%  Similarity=0.680  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |+|+||+|||||||.++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.27  E-value=8.3e-05  Score=53.03  Aligned_cols=23  Identities=17%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .-|+|+|||||||||+.++|...
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36799999999999999999764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.25  E-value=7.6e-05  Score=53.68  Aligned_cols=20  Identities=35%  Similarity=0.624  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 027703           17 IVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~   36 (220)
                      |+++|.|||||||+.++|..
T Consensus         5 i~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           5 IVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999975

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=7.9e-05  Score=53.93  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |+|+||+|||||||++.|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999999875

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=0.00011  Score=52.55  Aligned_cols=24  Identities=17%  Similarity=0.434  Sum_probs=21.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .--|+|+|||||||||+.+.|...
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999999775

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.23  E-value=0.00058  Score=49.75  Aligned_cols=83  Identities=18%  Similarity=0.146  Sum_probs=56.2

Q ss_pred             cCCcEEEEEEeCCCc-ccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH--HhCCeEEEeccCCC
Q 027703           85 RGAVGALVVYDITRR-SSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE--EEGLFFMETSALDS  161 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~  161 (220)
                      .+.|.+++|+.+.++ .+...+.+++......   .++.+++.||+||....  ..+.......  ....+++.+|+.++
T Consensus         9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~--~~~~~~~~~~~~~~~~~v~~vSa~~~   83 (225)
T d1u0la2           9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDED--DLRKVRELEEIYSGLYPIVKTSAKTG   83 (225)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHH--HHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHH--HHHHHHHhhcccccceeEEEeccccc
Confidence            567888888887764 4677777766554443   57888999999986422  1111222222  23457888999999


Q ss_pred             CCHHHHHHHHH
Q 027703          162 TNVEAAFEVVI  172 (220)
Q Consensus       162 ~~v~~l~~~l~  172 (220)
                      .+++++.+++.
T Consensus        84 ~g~~~L~~~l~   94 (225)
T d1u0la2          84 MGIEELKEYLK   94 (225)
T ss_dssp             TTHHHHHHHHS
T ss_pred             hhHhhHHHHhc
Confidence            99999888663

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.21  E-value=0.00012  Score=54.80  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=20.2

Q ss_pred             EEEECCCCCcHHHHHHHHhhCc
Q 027703           17 IVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~   38 (220)
                      |.+.||||+|||||.++|.+..
T Consensus        35 ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          35 FLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             EEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999998753

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.20  E-value=8.4e-05  Score=52.42  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=19.0

Q ss_pred             EEEE-EECCCCCcHHHHHHHHhhC
Q 027703           15 FKIV-LIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~-ilG~~g~GKSTll~~l~~~   37 (220)
                      +|+. |.|++||||||+.+.|...
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            4654 5799999999999999654

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.19  E-value=7.8e-05  Score=51.85  Aligned_cols=23  Identities=39%  Similarity=0.491  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+|+++|++||||||+-+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999654

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.19  E-value=9.4e-05  Score=51.47  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999999765

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=9.3e-05  Score=51.99  Aligned_cols=22  Identities=23%  Similarity=0.384  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      =|.++|++||||||+.+.+...
T Consensus        16 liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          16 VVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4888999999999999999653

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.15  E-value=9.8e-05  Score=52.38  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +=|+|-|++|||||||.++|...
T Consensus        23 ~iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          23 LVLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999999654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.14  E-value=0.00012  Score=50.81  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |.|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            556699999999999999876

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.14  E-value=0.00011  Score=50.87  Aligned_cols=22  Identities=41%  Similarity=0.579  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +|+++|++||||||+-++|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999665

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.10  E-value=0.00017  Score=50.16  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=21.1

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..+-|.++|.+||||||+-++|...
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467889999999999999998754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.10  E-value=0.00025  Score=54.88  Aligned_cols=24  Identities=13%  Similarity=0.300  Sum_probs=21.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      ..++|.|+.|||||||+++|+...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            358999999999999999999764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0005  Score=51.91  Aligned_cols=63  Identities=17%  Similarity=0.146  Sum_probs=41.1

Q ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-----ccceeeeeEEEEEeCCeEEEEEEEecCCcc
Q 027703           11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-----ATIGVEFQTQVVDIDGKEVKAQIWDTAGQE   74 (220)
Q Consensus        11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-----~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~   74 (220)
                      +++..=|+|+|+.++|||+|+|.|.+..+.-...     .|.|+-.....+ .++....+.+.||.|..
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEeccccc
Confidence            4456779999999999999999999876433211     233332222111 13445577889999964

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.07  E-value=0.0011  Score=49.93  Aligned_cols=92  Identities=12%  Similarity=0.089  Sum_probs=64.6

Q ss_pred             hhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEecc
Q 027703           79 VTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSA  158 (220)
Q Consensus        79 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (220)
                      ........+|.+++|.|+.++.+...  ..+..+.    .+.|.++|.||+|+....  ..+.-.+.........+.+|+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~isa   79 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINS   79 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCT
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceeec
Confidence            34557788999999999988766543  1222221    256899999999986422  122233344455678889999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 027703          159 LDSTNVEAAFEVVIREIYSN  178 (220)
Q Consensus       159 ~~~~~v~~l~~~l~~~~~~~  178 (220)
                      .++.+..++.+.+.+.+.+.
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          80 VNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             TTCTTGGGHHHHHHHHHHHH
T ss_pred             ccCCCccccchhhhhhhhhh
Confidence            99999999999888877653

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.03  E-value=0.00016  Score=51.62  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |.++|||||||||+.++|...
T Consensus        11 I~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          11 IFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999775

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.99  E-value=0.00019  Score=52.81  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..+.+.||||+||||+.+.+.+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999875

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.97  E-value=0.0002  Score=51.97  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.|+|-||+||||||..++|...
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            67899999999999999999765

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.97  E-value=0.00024  Score=52.84  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=22.1

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.-.|.+.||+|+|||++.++|...
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            4467999999999999999999875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.94  E-value=0.00022  Score=52.36  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..+.+.||||+||||+.+.|...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            35899999999999999999875

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.92  E-value=0.00025  Score=49.38  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |.++|++||||||+-+.|...
T Consensus         5 Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            779999999999999999654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=4.9e-05  Score=54.15  Aligned_cols=20  Identities=30%  Similarity=0.526  Sum_probs=17.3

Q ss_pred             EEECCCCCcHHHHHHHHhhC
Q 027703           18 VLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        18 ~ilG~~g~GKSTll~~l~~~   37 (220)
                      +|+|+|||||||++.+|.-.
T Consensus        28 vi~G~NGsGKStil~Ai~~~   47 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFVTA   47 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHH
Confidence            46799999999999999643

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.86  E-value=0.00029  Score=51.53  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.||+|+||||+++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999765

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00029  Score=50.86  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +=|+|.|++|||||||.+.|...
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999998654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00032  Score=51.85  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.||+|+||||+++++...
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999876

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00019  Score=50.78  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=20.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+-|.+.|++||||||+-+.|...
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356889999999999999999654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.78  E-value=0.00022  Score=54.33  Aligned_cols=52  Identities=15%  Similarity=0.236  Sum_probs=38.5

Q ss_pred             CeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeee--eecC
Q 027703          151 LFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTL--VKDG  204 (220)
Q Consensus       151 ~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~--~~~G  204 (220)
                      +.++|  =+.+++.....+.+.|.+.. ++.+++++||++..+. .+|+++.  +.+|
T Consensus       244 ~~~iDEpe~~Lhp~~~~~l~~~l~~~~-~~~QviitTHsp~~~~-~~d~~~~v~~~~g  299 (308)
T d1e69a_         244 FYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVME-AADLLHGVTMVNG  299 (308)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGGG-GCSEEEEEEESSS
T ss_pred             hhhhhhccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHHHHH-hcccEEEEEEeCC
Confidence            45566  56788888888888776554 4678899999998864 6788866  4444

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0004  Score=50.13  Aligned_cols=21  Identities=33%  Similarity=0.453  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |+|.|||||||||.-+.|...
T Consensus         6 I~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678899999999999999765

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.73  E-value=0.00041  Score=51.82  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.+.||+|+||||+++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            456799999999999999865

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.72  E-value=0.00041  Score=53.25  Aligned_cols=23  Identities=35%  Similarity=0.635  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -.++++||||+|||.|.++|...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            34789999999999999999875

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.67  E-value=0.00052  Score=50.91  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      .+.+.||+|+||||+++.+....
T Consensus        45 ~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.62  E-value=0.00059  Score=48.41  Aligned_cols=23  Identities=26%  Similarity=0.641  Sum_probs=20.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +=|+|-|..||||||+++.|...
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999999764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.61  E-value=0.00047  Score=51.22  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -++|.|++|+|||||++.+...
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            3779999999999999998754

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00057  Score=49.88  Aligned_cols=21  Identities=14%  Similarity=0.471  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.+.||+|+||||+++.+...
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            889999999999999999765

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.59  E-value=0.00068  Score=47.93  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +=|+|.|.+||||||+.+.|...
T Consensus         4 ~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            56899999999999999999654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.53  E-value=0.00069  Score=50.23  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.||+|+|||+|.++|...
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            4899999999999999999875

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.50  E-value=0.0023  Score=43.80  Aligned_cols=36  Identities=19%  Similarity=0.198  Sum_probs=25.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhCcCC--CCCccccee
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARNEFD--SNSKATIGV   49 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~~~~--~~~~~t~~~   49 (220)
                      ..=|++-|+=|||||||.+.+...--.  ....||+..
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l   70 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL   70 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEE
Confidence            455889999999999999999655322  244566654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.00085  Score=47.72  Aligned_cols=22  Identities=36%  Similarity=0.670  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +++++|++|+|||+++..|...
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHH
Confidence            4789999999999999888765

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.46  E-value=0.00082  Score=49.11  Aligned_cols=84  Identities=15%  Similarity=0.106  Sum_probs=57.6

Q ss_pred             cCCcEEEEEEeCCCc-ccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC--HHHHHHHHHHhCCeEEEeccCCC
Q 027703           85 RGAVGALVVYDITRR-SSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS--TEEGKSLAEEEGLFFMETSALDS  161 (220)
Q Consensus        85 ~~~~~~i~v~d~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~  161 (220)
                      .+.|.+++|+++.++ .+...+.+++-....   ..++.+++.||.||.......  .....+.....+.+++.+|+.++
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~   85 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ   85 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred             cccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCCh
Confidence            567888888888664 577777776555433   357778999999986422110  11122334456889999999999


Q ss_pred             CCHHHHHHHH
Q 027703          162 TNVEAAFEVV  171 (220)
Q Consensus       162 ~~v~~l~~~l  171 (220)
                      .+++++.+++
T Consensus        86 ~gl~~L~~~l   95 (231)
T d1t9ha2          86 DSLADIIPHF   95 (231)
T ss_dssp             TTCTTTGGGG
T ss_pred             hHHHHHHHhh
Confidence            9998887765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.00081  Score=48.82  Aligned_cols=22  Identities=18%  Similarity=0.453  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.||+|+||||+.+.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            4899999999999999998754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.00081  Score=50.11  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.||||+|||++.+.|...
T Consensus        47 ~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHHH
Confidence            4899999999999999999875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.44  E-value=0.00082  Score=50.11  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.||||+|||++++++...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            4899999999999999999885

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.0007  Score=49.87  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.||+|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999999775

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.00086  Score=48.68  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.||+|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4889999999999999999875

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.39  E-value=0.00074  Score=53.46  Aligned_cols=50  Identities=22%  Similarity=0.259  Sum_probs=39.4

Q ss_pred             CeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee
Q 027703          151 LFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV  201 (220)
Q Consensus       151 ~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~  201 (220)
                      +.++|  .+++|+.+...+.+.|.+....+.+++++||++..+. .||+.+.+
T Consensus       357 ililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~~V  408 (427)
T d1w1wa_         357 FFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALVGV  408 (427)
T ss_dssp             EEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccEEEE
Confidence            45667  8889999999999988776544667999999999766 57887644

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.39  E-value=0.00095  Score=47.66  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 027703           16 KIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~   36 (220)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998865

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.0011  Score=49.74  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      .++++|++|+|||++++.+....
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHH
Confidence            57899999999999999886653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.19  E-value=0.002  Score=46.09  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +=|+|.|..||||||+.+.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            66999999999999999988654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.0012  Score=49.34  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=21.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -.|.+.||+|+|||+|.+++.+.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            35899999999999999999886

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.05  E-value=0.0032  Score=49.60  Aligned_cols=19  Identities=42%  Similarity=0.730  Sum_probs=15.9

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 027703           17 IVLIGDSAVGKSNLLSRFA   35 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~   35 (220)
                      ++++|+||||||+++.-|.
T Consensus        46 ~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHH
Confidence            4899999999999885443

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.05  E-value=0.0018  Score=46.62  Aligned_cols=24  Identities=38%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+-|-+.|.|||||||+.+.|...
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999643

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0015  Score=49.91  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=20.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+=|+|.|++|||||||.+.|...
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~l  103 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHH
Confidence            367999999999999998888654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0017  Score=46.49  Aligned_cols=20  Identities=25%  Similarity=0.315  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 027703           17 IVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~   36 (220)
                      |+|-|+.||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999999865

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0018  Score=46.65  Aligned_cols=20  Identities=35%  Similarity=0.438  Sum_probs=17.5

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 027703           17 IVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~   36 (220)
                      |+|-|+.||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77789999999998888855

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0013  Score=47.92  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0026  Score=45.60  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +=|+|.|..||||||..+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            45889999999999999998765

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.84  E-value=0.0021  Score=51.59  Aligned_cols=22  Identities=36%  Similarity=0.714  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +|.++||+|||||-|.++|...
T Consensus        51 NILliGPTGvGKTlLAr~LAk~   72 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKL   72 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999999874

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.76  E-value=0.0013  Score=49.65  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=16.1

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |+|.|++||||||+.++|...
T Consensus         7 IgIaG~SGSGKTTva~~l~~i   27 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFDQI   27 (288)
T ss_dssp             EEEESCC---CCTHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999988664

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0032  Score=44.60  Aligned_cols=21  Identities=19%  Similarity=0.366  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.|.|++|+|||+|...+...
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            679999999999999988765

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.66  E-value=0.003  Score=49.33  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -+++.||||+|||+|.+.|.+.
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999876

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.004  Score=47.63  Aligned_cols=25  Identities=16%  Similarity=0.369  Sum_probs=21.6

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.-.++++||+|+|||.|.+.|...
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCcchhHHHHHHHHhh
Confidence            3446899999999999999999875

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.61  E-value=0.0051  Score=48.68  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHhhCc
Q 027703           17 IVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~   38 (220)
                      |.|.||.||||||+++.++...
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhhh
Confidence            7899999999999999998853

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.0034  Score=47.32  Aligned_cols=21  Identities=24%  Similarity=0.202  Sum_probs=18.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHh
Q 027703           15 FKIVLIGDSAVGKSNLLSRFA   35 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~   35 (220)
                      +=|+|-|++|||||||...|.
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeECCCCCCHHHHHHHHH
Confidence            668999999999999998774

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.56  E-value=0.0018  Score=49.86  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.+.|++|+|||+|.+++...
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999999764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.45  E-value=0.005  Score=42.87  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .-|++.|++|+||||+.-.+...
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            45899999999999999888776

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.28  E-value=0.0052  Score=44.20  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.+.|++|+|||-|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999775

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0053  Score=44.86  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.|.|||.+||||+++.+.-.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHHH
Confidence            589999999999999998443

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.22  E-value=0.0051  Score=44.26  Aligned_cols=21  Identities=19%  Similarity=0.301  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |++=|..||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.22  E-value=0.0045  Score=44.80  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.|.|++|+|||+|...+.-.
T Consensus        37 ~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          37 TELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            678999999999999988654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0052  Score=44.70  Aligned_cols=21  Identities=29%  Similarity=0.551  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      |+|=|..||||||+++.|...
T Consensus         5 IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           5 LSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.19  E-value=0.0056  Score=45.84  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .-|+|.|..|+|||||.+.+.+.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35889999999999999998764

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.14  E-value=0.006  Score=42.48  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .-+.+.|++|+||||+.-.+...
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            45899999999999999888765

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.14  E-value=0.0061  Score=44.20  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.|.|||.+||||+++.+.-.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHHH
Confidence            789999999999999998544

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.10  E-value=0.0058  Score=47.03  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.2

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhCc
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      ..++|+|=|.-||||||+++.|....
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999998753

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.08  E-value=0.0089  Score=45.99  Aligned_cols=26  Identities=27%  Similarity=0.238  Sum_probs=23.5

Q ss_pred             eeeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           12 EYLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        12 ~~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ...++|.|=|.-||||||+++.|...
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             CceEEEEEECCccCCHHHHHHHHHHH
Confidence            45789999999999999999999775

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.08  E-value=0.0062  Score=46.60  Aligned_cols=21  Identities=19%  Similarity=0.502  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.++||||+|||.|.+.|.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999999875

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.07  E-value=0.0073  Score=46.37  Aligned_cols=25  Identities=16%  Similarity=0.286  Sum_probs=21.7

Q ss_pred             eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703           13 YLFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        13 ~~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ..++|+|=|+-||||||+++.|...
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC-
T ss_pred             CceEEEEECCcCCCHHHHHHHHHHH
Confidence            4678999999999999999999754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.00  E-value=0.0061  Score=44.41  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      =+.|.|+||+|||||.-.++..
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3789999999999999888654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.0074  Score=44.04  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.+.||+|+||||+.+.+...
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            678999999999999998654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.92  E-value=0.0068  Score=44.02  Aligned_cols=22  Identities=41%  Similarity=0.644  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      =+.|.|+||+|||+|...+...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999999766

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.0083  Score=42.85  Aligned_cols=22  Identities=14%  Similarity=0.300  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHhhCc
Q 027703           17 IVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~   38 (220)
                      +.+.||+|+||||+.+.+....
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHhc
Confidence            8899999999999999887643

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.85  E-value=0.0083  Score=41.44  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .-|++.|++|+||||+.-.+...
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            46899999999999999877766

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.62  E-value=0.01  Score=43.10  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -|+|.|..||||||..+.|...
T Consensus         3 iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3899999999999999999653

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.42  E-value=0.01  Score=42.82  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhCc
Q 027703           17 IVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~~   38 (220)
                      +.|.|++|+|||+|...+....
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6789999999999999997653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.012  Score=42.74  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      =+.|.|++|+|||+|...+...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988753

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.35  E-value=0.008  Score=45.11  Aligned_cols=18  Identities=11%  Similarity=0.431  Sum_probs=14.4

Q ss_pred             EEEECCCCCcHHHH-HHHH
Q 027703           17 IVLIGDSAVGKSNL-LSRF   34 (220)
Q Consensus        17 i~ilG~~g~GKSTl-l~~l   34 (220)
                      +.|+|++|+||||. +.++
T Consensus        17 ~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHH
Confidence            68999999999975 4444

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.29  E-value=0.01  Score=47.07  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=19.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -+++|+|++|+|||++++.+...
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            45999999999999999877544

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.28  E-value=0.012  Score=45.92  Aligned_cols=23  Identities=30%  Similarity=0.535  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -.+.++||+|||||-|.++|...
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeeeCCCCccHHHHHHHHHhh
Confidence            45999999999999999999764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.014  Score=43.83  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      =|++|+|++|+|||+|+..+...
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHH
Confidence            47999999999999999999764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.07  E-value=0.014  Score=41.84  Aligned_cols=21  Identities=24%  Similarity=0.358  Sum_probs=17.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhh
Q 027703           16 KIVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~   36 (220)
                      -+.|.|++|+|||+|...++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            478899999999999876543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.05  E-value=0.015  Score=43.08  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      ++|.|++|+|||||+..+...
T Consensus        38 ~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHh
Confidence            679999999999998888643

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.05  E-value=0.012  Score=41.63  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -+++.||+++|||+|...|...
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHH
Confidence            3789999999999999999776

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.93  E-value=0.011  Score=44.61  Aligned_cols=15  Identities=20%  Similarity=0.634  Sum_probs=13.0

Q ss_pred             EEEECCCCCcHHHHH
Q 027703           17 IVLIGDSAVGKSNLL   31 (220)
Q Consensus        17 i~ilG~~g~GKSTll   31 (220)
                      +.|.|++|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.80  E-value=0.021  Score=43.48  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhCc
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      --+.++||+|+|||.+.+.|...-
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHHHh
Confidence            357899999999999999997654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.18  E-value=0.023  Score=41.83  Aligned_cols=20  Identities=30%  Similarity=0.322  Sum_probs=17.2

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 027703           17 IVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~   36 (220)
                      ..|.|++|+|||||+-.|.-
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999987754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.01  E-value=0.03  Score=41.54  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      -+.+.|++++|||+|++.|...
T Consensus       106 ~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         106 TIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5788999999999999999876

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.76  E-value=0.032  Score=43.22  Aligned_cols=18  Identities=22%  Similarity=0.525  Sum_probs=15.3

Q ss_pred             EEEECCCCCcHHHHHHHH
Q 027703           17 IVLIGDSAVGKSNLLSRF   34 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l   34 (220)
                      .+|.|++|+||||++..+
T Consensus       166 ~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         166 SVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEECCTTSTHHHHHHHH
T ss_pred             EEEEcCCCCCceehHHHH
Confidence            678999999999988554

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.71  E-value=0.055  Score=40.18  Aligned_cols=22  Identities=41%  Similarity=0.619  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhhC
Q 027703           16 KIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      |++|+|++|+|||+|+..+...
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999998888654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.81  E-value=0.071  Score=38.88  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhhCc
Q 027703           16 KIVLIGDSAVGKSNLLSRFARNE   38 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l~~~~   38 (220)
                      .|.|.|++|+||+++.+.|....
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEECCCCcCHHHHHHHHHHhc
Confidence            47999999999999999997643

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=90.32  E-value=0.088  Score=38.81  Aligned_cols=21  Identities=19%  Similarity=0.347  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.+.|++|+|||||.-.+...
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            678999999999998888665

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.16  E-value=0.12  Score=33.21  Aligned_cols=24  Identities=25%  Similarity=0.238  Sum_probs=21.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      .+.|.+-|.+|+||||+-++|...
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHH
Confidence            478999999999999999999654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=89.36  E-value=0.11  Score=37.92  Aligned_cols=88  Identities=11%  Similarity=0.055  Sum_probs=47.0

Q ss_pred             EEEEEEecCCcchhhhh-hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcE-EEEEecCCCCCCCCCCH
Q 027703           63 VKAQIWDTAGQERFRAV-TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGR-MLVGNKCDLDSIRDVST  139 (220)
Q Consensus        63 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~-~~v~~k~Dl~~~~~~~~  139 (220)
                      +.+.+.|+++....... .......++.++.+.+. +..++..+......+..... ...++ -++.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            34667788754322221 22223456766666554 45566655555555544332 22222 36789887543    23


Q ss_pred             HHHHHHHHHhCCeEEE
Q 027703          140 EEGKSLAEEEGLFFME  155 (220)
Q Consensus       140 ~~~~~~~~~~~~~~~~  155 (220)
                      +....+.+..+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            4556677777777664

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.13  E-value=0.11  Score=38.80  Aligned_cols=23  Identities=26%  Similarity=0.393  Sum_probs=19.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      =|++|+|++|+|||+|+..+...
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHHh
Confidence            47899999999999998766543

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.61  E-value=0.12  Score=38.96  Aligned_cols=14  Identities=43%  Similarity=0.605  Sum_probs=12.7

Q ss_pred             EEECCCCCcHHHHH
Q 027703           18 VLIGDSAVGKSNLL   31 (220)
Q Consensus        18 ~ilG~~g~GKSTll   31 (220)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999965

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.51  E-value=0.19  Score=32.48  Aligned_cols=20  Identities=20%  Similarity=0.114  Sum_probs=15.9

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 027703           17 IVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~   36 (220)
                      ..+.+|.|+|||+++-.+..
T Consensus        11 ~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          11 AHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46789999999998865543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.37  E-value=0.14  Score=35.80  Aligned_cols=24  Identities=8%  Similarity=0.079  Sum_probs=21.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhhC
Q 027703           14 LFKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        14 ~~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      ...+.+.|++|+|||++...+...
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~   38 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEY   38 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999998764

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=86.78  E-value=0.12  Score=38.92  Aligned_cols=15  Identities=40%  Similarity=0.547  Sum_probs=13.2

Q ss_pred             EEEECCCCCcHHHHH
Q 027703           17 IVLIGDSAVGKSNLL   31 (220)
Q Consensus        17 i~ilG~~g~GKSTll   31 (220)
                      -++.|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            388999999999965

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.30  E-value=0.12  Score=38.22  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=19.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhhC
Q 027703           15 FKIVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        15 ~ki~ilG~~g~GKSTll~~l~~~   37 (220)
                      =|++|+|++|+|||+|+..+...
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHT
T ss_pred             ceEeeccCCCCChHHHHHHHHhh
Confidence            36899999999999999876544

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.27  E-value=0.22  Score=36.69  Aligned_cols=19  Identities=21%  Similarity=0.459  Sum_probs=15.7

Q ss_pred             EEEEECCCCCcHHHHHHHH
Q 027703           16 KIVLIGDSAVGKSNLLSRF   34 (220)
Q Consensus        16 ki~ilG~~g~GKSTll~~l   34 (220)
                      +|+|-|..|+||||+.--|
T Consensus         4 ~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5888999999999965554

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=86.06  E-value=0.23  Score=32.62  Aligned_cols=20  Identities=30%  Similarity=0.498  Sum_probs=15.9

Q ss_pred             EEECCCCCcHHH-HHHHHhhC
Q 027703           18 VLIGDSAVGKSN-LLSRFARN   37 (220)
Q Consensus        18 ~ilG~~g~GKST-ll~~l~~~   37 (220)
                      .++||=.||||| |++++...
T Consensus         6 ~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHHHH
Confidence            578999999999 77776443

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.90  E-value=0.17  Score=38.25  Aligned_cols=14  Identities=43%  Similarity=0.605  Sum_probs=13.0

Q ss_pred             EEECCCCCcHHHHH
Q 027703           18 VLIGDSAVGKSNLL   31 (220)
Q Consensus        18 ~ilG~~g~GKSTll   31 (220)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            59999999999997

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.72  E-value=0.25  Score=36.35  Aligned_cols=20  Identities=20%  Similarity=0.310  Sum_probs=17.0

Q ss_pred             EEEECCCCCcHHHHHHHHhh
Q 027703           17 IVLIGDSAVGKSNLLSRFAR   36 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~   36 (220)
                      +.+.|++|+|||||.-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999866654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=85.64  E-value=0.23  Score=36.53  Aligned_cols=21  Identities=19%  Similarity=0.265  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +-+.|++++|||+|.-.+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            568999999999999888765

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=84.55  E-value=0.31  Score=33.90  Aligned_cols=21  Identities=19%  Similarity=0.341  Sum_probs=17.1

Q ss_pred             EEEEECCC-CCcHHHHHHHHhh
Q 027703           16 KIVLIGDS-AVGKSNLLSRFAR   36 (220)
Q Consensus        16 ki~ilG~~-g~GKSTll~~l~~   36 (220)
                      |+.|.|-. ||||||+.-.|..
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            68899996 9999998766644

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.36  E-value=0.31  Score=35.70  Aligned_cols=18  Identities=22%  Similarity=0.480  Sum_probs=14.6

Q ss_pred             EEEECCCCCcHHHHHHHH
Q 027703           17 IVLIGDSAVGKSNLLSRF   34 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l   34 (220)
                      +.+.|..|+||||+--.+
T Consensus        11 i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          11 LFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHH
Confidence            457999999999966555

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.46  E-value=0.045  Score=42.66  Aligned_cols=19  Identities=32%  Similarity=0.613  Sum_probs=17.0

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 027703           17 IVLIGDSAVGKSNLLSRFA   35 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~   35 (220)
                      -+|+|+|||||||++.+|.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3689999999999999984

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.78  E-value=0.32  Score=33.49  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHhhC
Q 027703           17 IVLIGDSAVGKSNLLSRFARN   37 (220)
Q Consensus        17 i~ilG~~g~GKSTll~~l~~~   37 (220)
                      +.|+|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            579999999999999998754

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.95  E-value=0.45  Score=34.60  Aligned_cols=20  Identities=20%  Similarity=0.605  Sum_probs=14.7

Q ss_pred             EEEEE-ECCCCCcHHHHHHHH
Q 027703           15 FKIVL-IGDSAVGKSNLLSRF   34 (220)
Q Consensus        15 ~ki~i-lG~~g~GKSTll~~l   34 (220)
                      -||.+ .|..|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            45444 599999999975544